BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037567
(374 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|356569961|ref|XP_003553162.1| PREDICTED: Werner syndrome ATP-dependent helicase homolog [Glycine
max]
Length = 920
Score = 632 bits (1629), Expect = e-178, Method: Compositional matrix adjust.
Identities = 289/374 (77%), Positives = 329/374 (87%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M S LKKYFG+S FRPYQ++VI++IIEKRDCLVVMATGSGKSLCYQ+PPLV KT +VVS
Sbjct: 6 MCSVLKKYFGFSDFRPYQREVIEKIIEKRDCLVVMATGSGKSLCYQVPPLVAKKTGIVVS 65
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLMQDQVM+LKQRGI AE+LGSAQ D +V +KAE G F +LFMTPEKAC +P SFWS
Sbjct: 66 PLISLMQDQVMALKQRGIKAEYLGSAQKDFTVHSKAEHGQFDILFMTPEKACTVPSSFWS 125
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
LLKAG+ LFAVDEAHCISEWGHDFR+EYK LDKLR LL VPFV LTATATEKVR DII
Sbjct: 126 NLLKAGISLFAVDEAHCISEWGHDFRVEYKHLDKLREVLLDVPFVGLTATATEKVRYDII 185
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
+SLKL NPYVTI SFDR NLFYGVK++NRGQSF+DELV+EI K V GS I+YC TIKD
Sbjct: 186 SSLKLNNPYVTIGSFDRTNLFYGVKLLNRGQSFIDELVREISKEVTNGGSTIIYCTTIKD 245
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+I K+ + G++AG YHGQM KAREE+HRLF+RDE++VMVAT+AFGMGIDKP++R V
Sbjct: 246 VEQIFKSFAEAGIEAGMYHGQMNGKAREESHRLFVRDELQVMVATIAFGMGIDKPNIRQV 305
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHYGCPK+LESYYQESGRCGRDGIASVCWLYY RS+FAKGDFYCG+ ++E QR AIMESL
Sbjct: 306 IHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKGDFYCGDVKSEKQRKAIMESL 365
Query: 361 LAAQRYCLLTTCRR 374
LAA+RYC+LTTCRR
Sbjct: 366 LAAERYCVLTTCRR 379
>gi|356537724|ref|XP_003537375.1| PREDICTED: LOW QUALITY PROTEIN: Werner syndrome ATP-dependent
helicase homolog [Glycine max]
Length = 920
Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust.
Identities = 284/374 (75%), Positives = 325/374 (86%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M S LKKYF +S FRPYQ++VI++IIEKRDCLVVMATGSGKSLCYQ+PPLV KT +VVS
Sbjct: 6 MRSVLKKYFRFSDFRPYQREVIEKIIEKRDCLVVMATGSGKSLCYQVPPLVVKKTGIVVS 65
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQVM+LKQRGI AE+LGSAQ D +V +KAE G F +LFMTPEKAC +P SFWS
Sbjct: 66 PLISLMRDQVMALKQRGIKAEYLGSAQKDFTVHSKAEHGQFDILFMTPEKACTVPSSFWS 125
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
LLKAG+ LFAVDEAHCISEWGHDFR+EYK LDKLR LL VPFV LTATATEKV+ DII
Sbjct: 126 NLLKAGISLFAVDEAHCISEWGHDFRVEYKHLDKLREVLLDVPFVGLTATATEKVQYDII 185
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
SLKL P+VTI S DR NLFYGVK++NRGQSF+DELV+EI K V GS I+YC TIKD
Sbjct: 186 GSLKLNYPFVTIGSVDRTNLFYGVKLLNRGQSFIDELVREISKEVTNGGSTIIYCTTIKD 245
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+I K+ + G++AG YHGQM KAREE+HRLF+RDE++VMVAT+AFGMGIDKP++R V
Sbjct: 246 VEQIFKSFAEAGIEAGMYHGQMNGKAREESHRLFVRDELQVMVATIAFGMGIDKPNIRQV 305
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHYGCPK+LESYYQESGRCGRDGIASVCWLYY RS+FAKGDFYCGE ++E QR AIMESL
Sbjct: 306 IHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKGDFYCGEVKSEKQRKAIMESL 365
Query: 361 LAAQRYCLLTTCRR 374
LAA+RYC+LTTCRR
Sbjct: 366 LAAERYCVLTTCRR 379
>gi|359478480|ref|XP_002275696.2| PREDICTED: Werner syndrome ATP-dependent helicase-like [Vitis
vinifera]
Length = 913
Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust.
Identities = 283/374 (75%), Positives = 323/374 (86%), Gaps = 1/374 (0%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M STLK+YFGYS FRPYQKD+IQ+I+E+RD LV+MATGSGKSLCYQLPPL+ GKTA+V+S
Sbjct: 1 MESTLKRYFGYSGFRPYQKDIIQKILERRDSLVIMATGSGKSLCYQLPPLILGKTAIVIS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLMQDQVM+LKQRGI AEFL SAQTD +V AE+G F +LFMTPEKAC IP SFWS
Sbjct: 61 PLISLMQDQVMALKQRGIRAEFLASAQTDPTVHKNAESGTFHVLFMTPEKACSIPGSFWS 120
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
KLLK G+CLFAVDEAHCISEWGHDFR+EYKQLDKLR LL VPFV LTATAT+KVR+DII
Sbjct: 121 KLLKVGICLFAVDEAHCISEWGHDFRMEYKQLDKLRAILLDVPFVGLTATATKKVRMDII 180
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
NSLK+++P V I SFDRKNLFYGVK R F+DE V EI K VA + S I+YC TIKD
Sbjct: 181 NSLKMRDPNVFIGSFDRKNLFYGVKSFIRNSQFMDEFVGEISKFVASSDSTIIYCTTIKD 240
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+I K+L++ G+KAG YHGQM + AREE+HR+FIRDE+ VMVAT+AFGMGIDKP++RHV
Sbjct: 241 VEQIYKSLQEAGIKAGIYHGQMANSAREESHRIFIRDEVHVMVATIAFGMGIDKPNIRHV 300
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHYGCPK+LESYYQESGRCGRDGIASVCWLYY R +F K DFYCGE+ T NQR AIM+SL
Sbjct: 301 IHYGCPKSLESYYQESGRCGRDGIASVCWLYYNRGDFMKADFYCGEA-TGNQRRAIMDSL 359
Query: 361 LAAQRYCLLTTCRR 374
+AAQ YCL TTCRR
Sbjct: 360 VAAQNYCLQTTCRR 373
>gi|449517403|ref|XP_004165735.1| PREDICTED: Werner syndrome ATP-dependent helicase homolog [Cucumis
sativus]
Length = 919
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 279/374 (74%), Positives = 323/374 (86%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M + LK YFG+S FR YQK++I+ I+ +DCLVVM+TGSGKSLCYQ+PPLV GKT +VVS
Sbjct: 1 MEAILKSYFGFSAFRLYQKEIIRDILLGKDCLVVMSTGSGKSLCYQVPPLVVGKTGIVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLMQDQVM+LKQRGI +E+LGS QTDS+VQ KAE+G + +LFMTPEKAC +P+SFWS
Sbjct: 61 PLISLMQDQVMALKQRGIKSEYLGSTQTDSTVQAKAESGQYNVLFMTPEKACSVPMSFWS 120
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
KL KAG+CLFAVDEAHCISEWGHDFR+EYKQLDKLR L +PFVALTATATEKVR DII
Sbjct: 121 KLKKAGICLFAVDEAHCISEWGHDFRVEYKQLDKLRDVLPDLPFVALTATATEKVRSDII 180
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
NSLK+K+P VTI SFDR NLFYGVK NRG F++E V +I K VA GS I+YC TIKD
Sbjct: 181 NSLKMKDPQVTIGSFDRTNLFYGVKSFNRGPLFMNEFVLDISKYVASGGSTIIYCTTIKD 240
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+I KAL++ G+ AG YHGQM K+R E+HRLFIRDE++VMVAT+AFGMGIDKP++R V
Sbjct: 241 VEQIFKALEEAGISAGIYHGQMDKKSRAESHRLFIRDELQVMVATIAFGMGIDKPNIRQV 300
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHYGCPK+LESYYQESGRCGRDGIASVCWLYY RS+FAK DFYCGESQTENQR AI ESL
Sbjct: 301 IHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKADFYCGESQTENQRRAIRESL 360
Query: 361 LAAQRYCLLTTCRR 374
+AAQ+YC + TCRR
Sbjct: 361 MAAQQYCSIATCRR 374
>gi|297745728|emb|CBI15784.3| unnamed protein product [Vitis vinifera]
Length = 969
Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust.
Identities = 278/370 (75%), Positives = 320/370 (86%), Gaps = 1/370 (0%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
+++YFGYS FRPYQKD+IQ+I+E+RD LV+MATGSGKSLCYQLPPL+ GKTA+V+SPLIS
Sbjct: 5 VQRYFGYSGFRPYQKDIIQKILERRDSLVIMATGSGKSLCYQLPPLILGKTAIVISPLIS 64
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLK 124
LMQDQVM+LKQRGI AEFL SAQTD +V AE+G F +LFMTPEKAC IP SFWSKLLK
Sbjct: 65 LMQDQVMALKQRGIRAEFLASAQTDPTVHKNAESGTFHVLFMTPEKACSIPGSFWSKLLK 124
Query: 125 AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLK 184
G+CLFAVDEAHCISEWGHDFR+EYKQLDKLR LL VPFV LTATAT+KVR+DIINSLK
Sbjct: 125 VGICLFAVDEAHCISEWGHDFRMEYKQLDKLRAILLDVPFVGLTATATKKVRMDIINSLK 184
Query: 185 LKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEI 244
+++P V I SFDRKNLFYGVK R F+DE V EI K VA + S I+YC TIKDVE+I
Sbjct: 185 MRDPNVFIGSFDRKNLFYGVKSFIRNSQFMDEFVGEISKFVASSDSTIIYCTTIKDVEQI 244
Query: 245 SKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYG 304
K+L++ G+KAG YHGQM + AREE+HR+FIRDE+ VMVAT+AFGMGIDKP++RHVIHYG
Sbjct: 245 YKSLQEAGIKAGIYHGQMANSAREESHRIFIRDEVHVMVATIAFGMGIDKPNIRHVIHYG 304
Query: 305 CPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLLAAQ 364
CPK+LESYYQESGRCGRDGIASVCWLYY R +F K DFYCGE+ T NQR AIM+SL+AAQ
Sbjct: 305 CPKSLESYYQESGRCGRDGIASVCWLYYNRGDFMKADFYCGEA-TGNQRRAIMDSLVAAQ 363
Query: 365 RYCLLTTCRR 374
YCL TTCRR
Sbjct: 364 NYCLQTTCRR 373
>gi|449462782|ref|XP_004149119.1| PREDICTED: ATP-dependent DNA helicase RecQ-like [Cucumis sativus]
Length = 906
Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust.
Identities = 277/374 (74%), Positives = 321/374 (85%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M + LK YFG+S FR YQK++I+ I+ +DCLVVM+TGSGKSLCYQ+PPLV GKT +VVS
Sbjct: 1 MEAILKSYFGFSAFRLYQKEIIRDILLGKDCLVVMSTGSGKSLCYQVPPLVVGKTGIVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLMQDQVM+LKQRGI +E+LGS Q DS+VQ AE+G + +LFMTPEKAC +P+SFWS
Sbjct: 61 PLISLMQDQVMALKQRGIKSEYLGSTQADSTVQANAESGQYSILFMTPEKACSVPMSFWS 120
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
KL KAG+CLFAVDEAHCISEWGHDFR+EYKQLDKLR L +PFVALTATATEKVR DII
Sbjct: 121 KLKKAGICLFAVDEAHCISEWGHDFRVEYKQLDKLRDVLPDLPFVALTATATEKVRSDII 180
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
NSLK+K+P VTI SFDR NLFYGVK NRG F++E V +I K VA GS I+YC TIKD
Sbjct: 181 NSLKMKDPQVTIGSFDRTNLFYGVKSFNRGPLFMNEFVLDISKYVASGGSTIIYCTTIKD 240
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+I KAL++ G+ AG YHGQM K+R E+HRLFIRDE++VMVAT+AFGMGIDKP++R V
Sbjct: 241 VEQIFKALEEAGISAGIYHGQMDKKSRAESHRLFIRDEVQVMVATVAFGMGIDKPNIRLV 300
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHYGCPK+LESYYQESGRCGRDGIASVCWLYY RS+FAK DFYCGESQTENQR AI ESL
Sbjct: 301 IHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKADFYCGESQTENQRRAIRESL 360
Query: 361 LAAQRYCLLTTCRR 374
+AAQ+YC + TCRR
Sbjct: 361 MAAQQYCSIATCRR 374
>gi|147845197|emb|CAN79469.1| hypothetical protein VITISV_016935 [Vitis vinifera]
Length = 447
Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust.
Identities = 279/374 (74%), Positives = 321/374 (85%), Gaps = 1/374 (0%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M +++YFGYS FRPYQKD+IQ+I+E+RD LV+MATGSGKSLCYQLPPL+ GKTA+V+S
Sbjct: 1 MWVLVQRYFGYSGFRPYQKDIIQKILERRDSLVIMATGSGKSLCYQLPPLILGKTAIVIS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLMQDQVM+LKQRGI AEFL SAQTD +V AE+G F +LFMTPEKAC IP SFWS
Sbjct: 61 PLISLMQDQVMALKQRGIRAEFLASAQTDPTVHKNAESGTFHVLFMTPEKACSIPGSFWS 120
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
KLLK G+CLFAVDEAHCISEWGHDFR+EYKQLDKLR LL VPFV LTATAT+KVR+DII
Sbjct: 121 KLLKVGICLFAVDEAHCISEWGHDFRMEYKQLDKLRAILLDVPFVGLTATATKKVRMDII 180
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
NSLK+++P V I SFDRKNLFYGVK R F+DE V EI K VA + S I+YC TIKD
Sbjct: 181 NSLKMRDPNVFIGSFDRKNLFYGVKSFIRNSQFMDEFVGEISKFVASSDSTIIYCTTIKD 240
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+I K+L++ G+KAG YHGQM + AREE+HR+FIRDE+ VMVAT+AFGMGIDKP++RHV
Sbjct: 241 VEQIYKSLQEAGIKAGIYHGQMANSAREESHRIFIRDEVHVMVATIAFGMGIDKPNIRHV 300
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHYGCPK+LESYYQESGRCGRDGIASVCWLYY R +F K DFYCGE+ T NQR AIM+SL
Sbjct: 301 IHYGCPKSLESYYQESGRCGRDGIASVCWLYYNRGDFMKADFYCGEA-TGNQRRAIMDSL 359
Query: 361 LAAQRYCLLTTCRR 374
+AAQ YCL TTCRR
Sbjct: 360 VAAQNYCLQTTCRR 373
>gi|449462784|ref|XP_004149120.1| PREDICTED: ATP-dependent DNA helicase RecQ-like [Cucumis sativus]
Length = 822
Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust.
Identities = 263/374 (70%), Positives = 315/374 (84%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M + LK+YFG+S RPYQK+VIQ I+ +DCLVV TGSGKSLCYQ+PPLV GKT +VVS
Sbjct: 1 MEAILKRYFGFSALRPYQKEVIQSILRGKDCLVVTGTGSGKSLCYQVPPLVVGKTGIVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PL+SLMQDQVM+LKQRGI +E+LGS Q DS+VQ AE+G + +LFMTPEKAC +P+SFWS
Sbjct: 61 PLVSLMQDQVMALKQRGIKSEYLGSTQADSTVQANAESGQYSILFMTPEKACSLPMSFWS 120
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
KL KAG+CLFAVDEAHCIS+WGH+FR EY+ LD R L G+PFVALTATA+EKVR DII
Sbjct: 121 KLKKAGICLFAVDEAHCISDWGHNFRAEYELLDNFRDILPGLPFVALTATASEKVRNDII 180
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
NSLK+K+P VTI SFDR NLFYGVK N + ++ELV +I K V GS I+YC TIKD
Sbjct: 181 NSLKMKDPQVTIGSFDRTNLFYGVKFFNHRRLLMNELVLDISKYVGSGGSTIIYCRTIKD 240
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ISK+LK+ G+ AG YH QM ++R E+HRLF+RDE++VMVAT+AFGMGIDKP++R V
Sbjct: 241 VEQISKSLKEAGISAGIYHAQMVKESRAESHRLFVRDELQVMVATVAFGMGIDKPNIRLV 300
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHYGCPK+LESYYQESGRCGRDGIASVCWLYY RS+FAK + YCG+S TEN+RTAIMESL
Sbjct: 301 IHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKAELYCGDSPTENERTAIMESL 360
Query: 361 LAAQRYCLLTTCRR 374
+AAQ+YC + TCRR
Sbjct: 361 MAAQQYCSIATCRR 374
>gi|224124876|ref|XP_002319444.1| predicted protein [Populus trichocarpa]
gi|222857820|gb|EEE95367.1| predicted protein [Populus trichocarpa]
Length = 854
Score = 572 bits (1475), Expect = e-161, Method: Compositional matrix adjust.
Identities = 266/340 (78%), Positives = 296/340 (87%)
Query: 35 MATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQT 94
MATGSGKSLCYQ+PPL+ KTA+V+SPLISLMQDQVMSLKQRGI AEFLGSAQTD SV T
Sbjct: 1 MATGSGKSLCYQVPPLLLEKTAVVISPLISLMQDQVMSLKQRGIRAEFLGSAQTDGSVHT 60
Query: 95 KAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDK 154
KA+TG+F LLFMTPEKAC P+SFW KLL+AG+CLFAVDEAHCISEWGHDFR+EYKQL K
Sbjct: 61 KAQTGHFHLLFMTPEKACSTPLSFWLKLLEAGICLFAVDEAHCISEWGHDFRVEYKQLYK 120
Query: 155 LRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFV 214
LR LL VPFVALTATATEKVRIDIINSLK+ NPYV + SFDRKNLFYGVK NR FV
Sbjct: 121 LRDVLLEVPFVALTATATEKVRIDIINSLKMNNPYVAVGSFDRKNLFYGVKHFNRSLQFV 180
Query: 215 DELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLF 274
DELVQEI K AGS I+YC TIKDVE+I K+LK+ G+K G YHGQM SKAREE+HR F
Sbjct: 181 DELVQEISKYARKAGSTIIYCTTIKDVEQIHKSLKEAGIKTGIYHGQMSSKAREESHRSF 240
Query: 275 IRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYAR 334
+RDE+ VMVAT+AFGMGIDKP++R VIHYGCPK++ESYYQESGRCGRDGI SVCWLYY R
Sbjct: 241 VRDELLVMVATIAFGMGIDKPNIRQVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTR 300
Query: 335 SNFAKGDFYCGESQTENQRTAIMESLLAAQRYCLLTTCRR 374
++FAK DFYCG +TENQR A+MESL+AAQ YC LTTCRR
Sbjct: 301 ADFAKADFYCGGLRTENQRRAVMESLMAAQHYCSLTTCRR 340
>gi|255570869|ref|XP_002526386.1| conserved hypothetical protein [Ricinus communis]
gi|223534248|gb|EEF35962.1| conserved hypothetical protein [Ricinus communis]
Length = 795
Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust.
Identities = 256/345 (74%), Positives = 298/345 (86%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M S LKKYFG+S FRPYQK+VI++I+E++DCLVVMATGSGKSLCYQ+PPLV GKTA+V+S
Sbjct: 1 MESALKKYFGFSGFRPYQKEVIEKILERKDCLVVMATGSGKSLCYQVPPLVAGKTAVVIS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLMQDQVM+LKQRGI AE+LG+ QTD SV A+ G+F LLF+TPEKAC +P+SFWS
Sbjct: 61 PLISLMQDQVMALKQRGIRAEYLGTGQTDHSVHNSAQNGHFNLLFVTPEKACSLPVSFWS 120
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
LLK GVCL AVDEAHCISEWGHDFR+EYKQL KLR LL VPFV LTATAT KVR DII
Sbjct: 121 SLLKVGVCLLAVDEAHCISEWGHDFRVEYKQLYKLRNILLDVPFVGLTATATAKVRFDII 180
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
NSLK+ +PY+++ SFDRKNLFYGVK NRG F+DELVQEI K V S I+YC T+KD
Sbjct: 181 NSLKMNDPYISVGSFDRKNLFYGVKHFNRGSQFMDELVQEISKFVGNGDSTIIYCTTVKD 240
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE++ + L+Q G++AG YHGQMG+KAREE+H+ FIRDE+ VMVAT+AFGMGIDKP++R V
Sbjct: 241 VEQVFQLLQQAGIRAGIYHGQMGNKAREESHKSFIRDELHVMVATIAFGMGIDKPNIRQV 300
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCG 345
IHYGCPK+LESYYQESGRCGRDGI SVCWLYY S+FAKGDFYCG
Sbjct: 301 IHYGCPKSLESYYQESGRCGRDGIPSVCWLYYTGSDFAKGDFYCG 345
>gi|242046956|ref|XP_002461224.1| hypothetical protein SORBIDRAFT_02g043160 [Sorghum bicolor]
gi|241924601|gb|EER97745.1| hypothetical protein SORBIDRAFT_02g043160 [Sorghum bicolor]
Length = 901
Score = 565 bits (1457), Expect = e-158, Method: Compositional matrix adjust.
Identities = 255/374 (68%), Positives = 306/374 (81%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M + LK YFGYS FRPYQ+++IQ++++ RDCL VMATGSGKS+CYQ+PPLVT KTA+VVS
Sbjct: 1 MEAALKGYFGYSTFRPYQREIIQKVLDGRDCLAVMATGSGKSICYQIPPLVTKKTAVVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PL+SLMQDQVMSLKQ+G+ +E+LGS Q +SSV +AE G F +L+MTPEKA +P FWS
Sbjct: 61 PLLSLMQDQVMSLKQKGVKSEYLGSTQMNSSVSNEAEKGAFDVLYMTPEKAISLPSRFWS 120
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L AG+CL AVDEAHCISEWGHDFR+EYKQL LR L+ VPFVALTATATE+VR DI
Sbjct: 121 NLQAAGICLLAVDEAHCISEWGHDFRIEYKQLHSLRDLLVDVPFVALTATATERVRQDIS 180
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
SL L++P+V + SFDR NLFYGVK NR SFV ELV+++ K A S I+YC TI+D
Sbjct: 181 TSLVLRSPHVVVGSFDRHNLFYGVKTCNRSMSFVSELVKDVSKKSAAGESTIIYCTTIRD 240
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
E++ +AL G+KAG YHGQMGS+AREE+HR FIRDE+ VMVAT+AFGMGIDKPDVR V
Sbjct: 241 TEQVHEALVTSGIKAGIYHGQMGSRAREESHRSFIRDEVLVMVATIAFGMGIDKPDVRCV 300
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHYGCPK+LESYYQESGRCGRDG+ S+CWLYY RS+F K DFYC E++ QR AIM+S
Sbjct: 301 IHYGCPKSLESYYQESGRCGRDGLPSICWLYYQRSDFTKADFYCSEAKNGTQRKAIMDSF 360
Query: 361 LAAQRYCLLTTCRR 374
+AAQ+YCLL TCRR
Sbjct: 361 MAAQKYCLLATCRR 374
>gi|414888136|tpg|DAA64150.1| TPA: hypothetical protein ZEAMMB73_018829 [Zea mays]
Length = 898
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 254/374 (67%), Positives = 305/374 (81%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M + LK YFGYS FRPYQ+++IQ++++ RDCLVVMATGSGKS+CYQ+PPLVT KTA+VVS
Sbjct: 1 MEAALKGYFGYSTFRPYQREIIQKVLDGRDCLVVMATGSGKSICYQIPPLVTKKTAVVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PL+SLMQDQVMSLKQ+G+ +E+LGS QT+SSV +AE G F +L+MTPEKA +P FWS
Sbjct: 61 PLLSLMQDQVMSLKQKGVKSEYLGSTQTNSSVSNEAEKGTFDVLYMTPEKAISLPSRFWS 120
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L +G+CL AVDEAHCISEWGHDFR EYKQL LR L+GVPFVALTATATE+VR DI
Sbjct: 121 NLQASGICLLAVDEAHCISEWGHDFRTEYKQLHSLRNLLVGVPFVALTATATERVRQDIS 180
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
SL L +P+V + SFDR NLFYGVK NR SF+ ELV+++ K S I+YC TI+D
Sbjct: 181 TSLVLCSPHVVVGSFDRHNLFYGVKTCNRSMSFISELVKDVSKRSDVGESTIIYCTTIRD 240
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
E++ +AL G+K G YHGQMGS+AREE+HR FIRDE+ VMVAT+AFGMGIDKPDVR V
Sbjct: 241 TEQVHEALVTSGIKTGIYHGQMGSRAREESHRSFIRDEVLVMVATIAFGMGIDKPDVRCV 300
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHYGCPK+LESYYQESGRCGRDG+ S+CWLYY RS+ K DFYC E++ E QR AIM+S
Sbjct: 301 IHYGCPKSLESYYQESGRCGRDGLPSICWLYYQRSDITKADFYCSEAKNETQRKAIMDSF 360
Query: 361 LAAQRYCLLTTCRR 374
+AAQ+YCLL TCRR
Sbjct: 361 MAAQKYCLLATCRR 374
>gi|357121465|ref|XP_003562440.1| PREDICTED: Werner syndrome ATP-dependent helicase-like
[Brachypodium distachyon]
Length = 894
Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust.
Identities = 251/374 (67%), Positives = 304/374 (81%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M + LK+YFGY+ FRPYQ ++IQ+++E RDCLVVMATGSGKS+CYQ+PPLV KTA+VVS
Sbjct: 1 MEAALKRYFGYTGFRPYQGEIIQKVLEGRDCLVVMATGSGKSICYQIPPLVAKKTAVVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PL+SLMQDQVMSLKQ G+ +++LGS Q ++SV ++AE G F +L+MTPEKA +P FWS
Sbjct: 61 PLLSLMQDQVMSLKQHGVRSDYLGSTQMNTSVSSEAEKGMFDVLYMTPEKAISLPSRFWS 120
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L +G+CL A+DEAHCISEWGHDFR EYKQL LR L+GVPFVALTATATE+VR DI
Sbjct: 121 NLQASGICLLAIDEAHCISEWGHDFRPEYKQLHSLRDHLVGVPFVALTATATERVRGDIA 180
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
SL L NP++ I SFDR NLFYGVK NR SF+ ELV+E+ K+ GS I+YC TIKD
Sbjct: 181 TSLNLSNPHIAIGSFDRPNLFYGVKSCNRSVSFISELVKEVSKNCTVGGSTIIYCTTIKD 240
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
E++ +A+ G+KA YHG+MGSKARE++HR F+RDE+ VMVAT+AFGMGIDKPDVR V
Sbjct: 241 TEQVHEAMVSAGIKANIYHGRMGSKAREDSHRSFVRDEVFVMVATIAFGMGIDKPDVRCV 300
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHYGCPK+LESYYQESGRCGRDG+ SVCWLYY RS+F KGDFYC E+ QR AIM+S
Sbjct: 301 IHYGCPKSLESYYQESGRCGRDGLPSVCWLYYQRSDFTKGDFYCSEATNPTQRKAIMDSF 360
Query: 361 LAAQRYCLLTTCRR 374
+AAQ+YCL T CRR
Sbjct: 361 MAAQKYCLHTACRR 374
>gi|218200270|gb|EEC82697.1| hypothetical protein OsI_27361 [Oryza sativa Indica Group]
Length = 905
Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust.
Identities = 249/374 (66%), Positives = 305/374 (81%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M + LK YFG+S FR YQ+++IQ+++E RDCLVVMATGSGKS+CYQ+PPLVT KTA+VVS
Sbjct: 1 MEAALKTYFGFSGFRSYQREIIQKVLEGRDCLVVMATGSGKSICYQIPPLVTKKTAVVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PL+SLMQDQVMSLKQ G+ +E+LGS QTD SV +AE G F +L+MTPEKA +P FWS
Sbjct: 61 PLLSLMQDQVMSLKQHGVKSEYLGSTQTDISVSGQAEKGAFDVLYMTPEKAVSLPSRFWS 120
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L AG+CL AVDEAHCISEWGHDFR EYKQL LR L+GVPFVALTATAT++VR DI
Sbjct: 121 NLQAAGICLLAVDEAHCISEWGHDFRTEYKQLHMLRDLLVGVPFVALTATATQRVRGDIA 180
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
SL L+NP++ + SFDR NLFYGVK NR +F++ELV+++ K+ GS I+YC TI++
Sbjct: 181 TSLTLRNPHIVVGSFDRPNLFYGVKSCNRSMAFINELVKDVSKNCTVGGSTIIYCTTIRE 240
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
E++ +AL G+K+ YHG+MG+KAREE+HR F+RDE+ VMVAT+AFGMGIDKPDVR V
Sbjct: 241 TEQVHEALVAAGIKSSIYHGRMGNKAREESHRSFVRDEVLVMVATIAFGMGIDKPDVRCV 300
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHYGCPK+LESYYQESGRCGRDG+ SVCWLYY RS+F K DFYC E+++ R AIMES
Sbjct: 301 IHYGCPKSLESYYQESGRCGRDGLPSVCWLYYQRSDFMKSDFYCAEAKSHTHRKAIMESF 360
Query: 361 LAAQRYCLLTTCRR 374
+AAQ+YCLL TC R
Sbjct: 361 MAAQKYCLLATCHR 374
>gi|115474113|ref|NP_001060655.1| Os07g0681600 [Oryza sativa Japonica Group]
gi|33146670|dbj|BAC80016.1| putative ATP-dependent DNA helicase recQ [Oryza sativa Japonica
Group]
gi|113612191|dbj|BAF22569.1| Os07g0681600 [Oryza sativa Japonica Group]
gi|215707030|dbj|BAG93490.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 886
Score = 549 bits (1415), Expect = e-154, Method: Compositional matrix adjust.
Identities = 248/374 (66%), Positives = 305/374 (81%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M + LK YFG+S FR YQ+++IQ+++E RDCLVVMATGSGKS+CYQ+PPLVT KTA+VVS
Sbjct: 1 MEAALKTYFGFSGFRSYQREIIQKVLEGRDCLVVMATGSGKSICYQIPPLVTKKTAVVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PL+SLMQDQVMSLKQ G+ +E+LGS QTD SV +AE G F +L+MTPEKA +P FWS
Sbjct: 61 PLLSLMQDQVMSLKQHGVKSEYLGSTQTDISVSGQAEKGAFDVLYMTPEKAVSLPSRFWS 120
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L AG+CL AVDEAHCISEWGHDFR EYKQL LR L+GVPFVALTATAT++VR DI
Sbjct: 121 NLQAAGICLLAVDEAHCISEWGHDFRTEYKQLHMLRDLLVGVPFVALTATATQRVRGDIA 180
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
SL L+ P++ + SFDR NLFYGVK NR +F++ELV+++ K+ GS I+YC TI++
Sbjct: 181 TSLTLRIPHIVVGSFDRPNLFYGVKSCNRSMAFINELVKDVSKNCTVGGSTIIYCTTIRE 240
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
E++ +AL G+K+ YHG+MG+KAREE+HR F+RDE+ VMVAT+AFGMGIDKPDVR V
Sbjct: 241 TEQVHEALVAAGIKSSIYHGRMGNKAREESHRSFVRDEVLVMVATIAFGMGIDKPDVRCV 300
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHYGCPK+LESYYQESGRCGRDG+ SVCWLYY RS+F K DFYC E++++ R AIMES
Sbjct: 301 IHYGCPKSLESYYQESGRCGRDGLPSVCWLYYQRSDFMKSDFYCAEAKSQTHRKAIMESF 360
Query: 361 LAAQRYCLLTTCRR 374
+AAQ+YCLL TC R
Sbjct: 361 MAAQKYCLLATCHR 374
>gi|222637699|gb|EEE67831.1| hypothetical protein OsJ_25607 [Oryza sativa Japonica Group]
Length = 905
Score = 549 bits (1415), Expect = e-154, Method: Compositional matrix adjust.
Identities = 248/374 (66%), Positives = 305/374 (81%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M + LK YFG+S FR YQ+++IQ+++E RDCLVVMATGSGKS+CYQ+PPLVT KTA+VVS
Sbjct: 1 MEAALKTYFGFSGFRSYQREIIQKVLEGRDCLVVMATGSGKSICYQIPPLVTKKTAVVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PL+SLMQDQVMSLKQ G+ +E+LGS QTD SV +AE G F +L+MTPEKA +P FWS
Sbjct: 61 PLLSLMQDQVMSLKQHGVKSEYLGSTQTDISVSGQAEKGAFDVLYMTPEKAVSLPSRFWS 120
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L AG+CL AVDEAHCISEWGHDFR EYKQL LR L+GVPFVALTATAT++VR DI
Sbjct: 121 NLQAAGICLLAVDEAHCISEWGHDFRTEYKQLHMLRDLLVGVPFVALTATATQRVRGDIA 180
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
SL L+ P++ + SFDR NLFYGVK NR +F++ELV+++ K+ GS I+YC TI++
Sbjct: 181 TSLTLRIPHIVVGSFDRPNLFYGVKSCNRSMAFINELVKDVSKNCTVGGSTIIYCTTIRE 240
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
E++ +AL G+K+ YHG+MG+KAREE+HR F+RDE+ VMVAT+AFGMGIDKPDVR V
Sbjct: 241 TEQVHEALVAAGIKSSIYHGRMGNKAREESHRSFVRDEVLVMVATIAFGMGIDKPDVRCV 300
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHYGCPK+LESYYQESGRCGRDG+ SVCWLYY RS+F K DFYC E++++ R AIMES
Sbjct: 301 IHYGCPKSLESYYQESGRCGRDGLPSVCWLYYQRSDFMKSDFYCAEAKSQTHRKAIMESF 360
Query: 361 LAAQRYCLLTTCRR 374
+AAQ+YCLL TC R
Sbjct: 361 MAAQKYCLLATCHR 374
>gi|302767148|ref|XP_002966994.1| hypothetical protein SELMODRAFT_408296 [Selaginella moellendorffii]
gi|300164985|gb|EFJ31593.1| hypothetical protein SELMODRAFT_408296 [Selaginella moellendorffii]
Length = 901
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 229/374 (61%), Positives = 291/374 (77%), Gaps = 3/374 (0%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M LK YFGYS FRP+QK+VIQ+I+ RDCLVVMATGSGKS+CYQ+PPLV+ KTA+V+S
Sbjct: 1 MERCLKDYFGYSSFRPFQKEVIQQILRGRDCLVVMATGSGKSICYQIPPLVSSKTAVVIS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLMQDQVM LK RGI AE+LGSAQTD +V+ KA G + +L+MTPEKAC + W+
Sbjct: 61 PLISLMQDQVMGLKLRGIKAEYLGSAQTDKTVEDKAGRGEYDILYMTPEKACG---TTWT 117
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
LL GV L AVDEAHCISEWGHDFR EY++L +R+ L VPFVALTATAT KVR DI+
Sbjct: 118 SLLSRGVSLLAVDEAHCISEWGHDFRPEYQRLSSIRSKLPEVPFVALTATATHKVREDIL 177
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
SL LKN Y+ ++SFDR N+FYGVK + R +F +EL E++K + GS IVYC TIKD
Sbjct: 178 KSLMLKNAYIAVSSFDRSNIFYGVKPLTRSNAFREELATEVVKDLEQGGSTIVYCNTIKD 237
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+E++ AL + G A YH ++G K R + HR F++DE++V+VAT+AFGMGIDKPD+R V
Sbjct: 238 VDEVTNALVKAGAAARAYHSKLGLKERNDVHRTFLKDELQVVVATVAFGMGIDKPDIRRV 297
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHYGCPK+LESYYQESGRCGRDG+ S CWLY+ R++F + ++Y E +T+ ++ A+ ++
Sbjct: 298 IHYGCPKSLESYYQESGRCGRDGLPSACWLYFTRADFTRAEYYTSEVRTQERKKAVADAF 357
Query: 361 LAAQRYCLLTTCRR 374
A+Q YC TTCRR
Sbjct: 358 AASQGYCTTTTCRR 371
>gi|302755182|ref|XP_002961015.1| hypothetical protein SELMODRAFT_402571 [Selaginella moellendorffii]
gi|300171954|gb|EFJ38554.1| hypothetical protein SELMODRAFT_402571 [Selaginella moellendorffii]
Length = 935
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 228/374 (60%), Positives = 289/374 (77%), Gaps = 3/374 (0%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M LK YFGYS FRP+QK+VIQ+I+ RDCLVVMATGSGKS+CYQ+PPLV+ KTA+V+S
Sbjct: 1 MERCLKDYFGYSSFRPFQKEVIQQILRGRDCLVVMATGSGKSICYQIPPLVSSKTAVVIS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLMQDQVM LK RGI AE+LGSAQTD +V+ KA G + +L+MTPEKAC + W+
Sbjct: 61 PLISLMQDQVMGLKLRGIKAEYLGSAQTDKTVEDKAGRGEYDILYMTPEKACG---TTWT 117
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
LL GV L AVDEAHCISEWGHDFR EY++L +R+ L VPFVALTATAT KVR DI+
Sbjct: 118 SLLSRGVSLLAVDEAHCISEWGHDFRPEYQRLSSIRSKLPEVPFVALTATATHKVREDIL 177
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
SL L N Y+ ++SFDR N+ YGVK + R +F +EL E++K + GS IVYC TIKD
Sbjct: 178 KSLMLTNAYIAVSSFDRPNILYGVKPLTRSNAFREELATEVVKDLEQGGSTIVYCNTIKD 237
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+E++ AL + G A YH ++G K R + HR F++DE++V+VAT+AFGMGIDKPD+R V
Sbjct: 238 VDEVTNALVKAGAAARAYHSKLGLKERNDVHRTFLKDELQVVVATVAFGMGIDKPDIRRV 297
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHYGCPK+LESYYQESGRCGRDG+ S CWLY+ R++F + +FY E +T+ ++ A+ ++
Sbjct: 298 IHYGCPKSLESYYQESGRCGRDGLPSACWLYFTRADFTRAEFYTSEVRTQERKKAVADAF 357
Query: 361 LAAQRYCLLTTCRR 374
A+Q YC TTCRR
Sbjct: 358 AASQGYCTTTTCRR 371
>gi|449510454|ref|XP_004163669.1| PREDICTED: Bloom syndrome protein homolog [Cucumis sativus]
Length = 1050
Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust.
Identities = 229/316 (72%), Positives = 264/316 (83%)
Query: 59 VSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISF 118
V P + +VM+LKQRGI +E+LGS QTD +VQ KAE G + +LFMTPEKAC + SF
Sbjct: 424 VGPSMLAYDGKVMALKQRGIKSEYLGSTQTDYTVQHKAERGQYNILFMTPEKACSVSTSF 483
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
WSKL AG+CLFAVDEAHCISEWGHDFR+EYKQLDKLR L G+PFVALTATATEKVR D
Sbjct: 484 WSKLKTAGICLFAVDEAHCISEWGHDFRVEYKQLDKLRDVLPGLPFVALTATATEKVRND 543
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
IINSLK+K+P VTI SFDR NLFYGVK +RG F+++LV +I K VA GS I+YC TI
Sbjct: 544 IINSLKMKDPQVTIGSFDRTNLFYGVKSFDRGPLFMNKLVLDISKYVASGGSTIIYCTTI 603
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
KDVE+ISKAL++ G+ AG YHG M +R E+HRLFIRDE++VMVAT+AFGMGIDKP+VR
Sbjct: 604 KDVEQISKALEEAGISAGIYHGLMDKTSRAESHRLFIRDEVQVMVATVAFGMGIDKPNVR 663
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
VIHYGCPK+LESYYQESGR GRDGIASVCWLYY RS+FAK DFYCGES TENQRTAIME
Sbjct: 664 QVIHYGCPKSLESYYQESGRGGRDGIASVCWLYYTRSDFAKADFYCGESLTENQRTAIME 723
Query: 359 SLLAAQRYCLLTTCRR 374
SL+AAQ+YC + TCRR
Sbjct: 724 SLMAAQQYCSIATCRR 739
>gi|168036322|ref|XP_001770656.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678017|gb|EDQ64480.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 964
Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust.
Identities = 230/401 (57%), Positives = 288/401 (71%), Gaps = 27/401 (6%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLC---------------- 44
M LK++FGY+ FRP+QK+V+ +I++ +DCLV+MATGSGKS+C
Sbjct: 1 MERVLKEFFGYTSFRPFQKEVVSQILKGKDCLVIMATGSGKSICLVHLKTLPHVVNSLLD 60
Query: 45 ---YQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYF 101
YQLPPL+T KTA+VVSPLISLMQDQVM L+QRGI AE++GSAQTD +V ++AE G +
Sbjct: 61 VVSYQLPPLITKKTAVVVSPLISLMQDQVMGLQQRGIRAEYMGSAQTDRTVNSRAENGDY 120
Query: 102 QLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLG 161
LL+MTPEKAC + SFW+ LL GV L AVDEAHC+SEWGHDFR EY+ LD LR L
Sbjct: 121 DLLYMTPEKACSVSQSFWTALLSKGVSLLAVDEAHCVSEWGHDFRHEYQNLDALRPMLPK 180
Query: 162 VPFVALTATATE--------KVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSF 213
VPFVALTATAT +VR DI+ S+ L++ Y I+SFDR NLFYGV +NR +F
Sbjct: 181 VPFVALTATATHNSSGQVLSRVREDIVQSMNLQDAYTAISSFDRPNLFYGVSGLNRTATF 240
Query: 214 VDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRL 273
EL +EILK V +GS I+YC TIKDVEE+ AL++ G A YH +M S R E HR
Sbjct: 241 KQELAREILKDVGKSGSTIIYCTTIKDVEEVVDALQKEGANARPYHAKMSSTLRTEVHRA 300
Query: 274 FIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYA 333
F DE++++VAT+AFGMGIDKPD+R VIHYGCPK+LE+YYQESGRCGRDG S CW+YY
Sbjct: 301 FSTDELQIVVATVAFGMGIDKPDIRRVIHYGCPKSLEAYYQESGRCGRDGFPSQCWMYYT 360
Query: 334 RSNFAKGDFYCGESQTENQRTAIMESLLAAQRYCLLTTCRR 374
RS+FAK DF+ T ++ A+++S AA+ YC CRR
Sbjct: 361 RSDFAKRDFFTAGFTTAVRKQAVLDSYAAAKDYCATVKCRR 401
>gi|405954059|gb|EKC21596.1| Werner syndrome ATP-dependent helicase-like protein [Crassostrea
gigas]
Length = 1136
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 175/373 (46%), Positives = 236/373 (63%), Gaps = 3/373 (0%)
Query: 5 LKKYFGYSVFRPYQKDVIQRII-EKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
LKKYFGYS FRP Q +I ++ EKRD VVMATG GKSLCYQ P + T KT +V+SPLI
Sbjct: 256 LKKYFGYSKFRPMQWKIINSVLNEKRDSCVVMATGYGKSLCYQFPSVFTQKTTVVISPLI 315
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDSS-VQTKAETGYFQLLFMTPEKACIIPISFWSKL 122
SLMQDQVM L+ I A FLGSAQ +S+ V+ + G +++L++TPE A ++ L
Sbjct: 316 SLMQDQVMGLQAANIEACFLGSAQENSTQVRQDLKRGKYRVLYITPEYASSGGVNHLKDL 375
Query: 123 LK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
+ G+ L A+DEAHC+S+WGHDFR Y+ L +L+ VP VALTATAT++VR+DI
Sbjct: 376 DRDVGLDLIAIDEAHCVSQWGHDFRSAYRSLGQLKEAFPQVPVVALTATATQEVRLDICR 435
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
SLKL++P + FDR NLF V + + + + G I+YC T K
Sbjct: 436 SLKLRDPSIICTGFDRPNLFLSVGLKTDTAFDLRSQMTKQGNKFNFDGPTIIYCPTKKAT 495
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
+++ +K + + + YH + R +AHR F+ D+++V++AT+AFGMGIDKPDVR VI
Sbjct: 496 NDVAAIVKGMNIPSAPYHAGLSQADRNKAHRQFVNDQVQVIIATVAFGMGIDKPDVRKVI 555
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
HYG PK +ESYYQE GR GRDG+ S C ++Y +F + E Q E R M+ L
Sbjct: 556 HYGAPKDIESYYQEVGRAGRDGLPSQCHVFYTEKDFLTSRHFISEVQNEKFREHKMKMLG 615
Query: 362 AAQRYCLLTTCRR 374
Q+Y TTCRR
Sbjct: 616 KMQQYLKTTTCRR 628
>gi|301789889|ref|XP_002930354.1| PREDICTED: Werner syndrome ATP-dependent helicase-like, partial
[Ailuropoda melanoleuca]
Length = 1120
Score = 341 bits (874), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 178/377 (47%), Positives = 240/377 (63%), Gaps = 6/377 (1%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEK-RDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+++LK YFG+S F+P Q VI ++E+ RD +VVMATG GKSLC+Q PP+ +G+ LV+S
Sbjct: 217 INSLKIYFGHSSFKPVQWKVIHSVLEEGRDNVVVMATGYGKSLCFQFPPVYSGRIGLVIS 276
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ LK + A FLGSAQ SV ++G +++++MTPE C +S
Sbjct: 277 PLISLMEDQVLQLKMSNVPACFLGSAQP-KSVLEDIKSGKYRIVYMTPE-FCSGNLSLLQ 334
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L G+ L AVDEAHCISEWGHDFR ++ L L+ L VP VALTATA+ +R DI
Sbjct: 335 QLQANIGITLIAVDEAHCISEWGHDFRSSFRNLGSLKAILPSVPIVALTATASSSIREDI 394
Query: 180 INSLKLKNPYVTIASFDRKNLFY--GVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
+ SL LKNP +T SFDR NL+ G K N Q V LVQ+ S G I+YC +
Sbjct: 395 VRSLNLKNPQITCTSFDRPNLYLEVGRKTGNIHQDLVQFLVQKTSSSWEFEGPTIIYCPS 454
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K E+++ L++L + GTYH +G K+R E H F+RDEI+ +VAT+AFGMGI+K D+
Sbjct: 455 RKMTEQVTAELQKLKLACGTYHAGLGVKSRREVHHSFMRDEIQCVVATIAFGMGINKADI 514
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHYG PK +ESYYQE GR GRDG+ S C + +A ++ E E R +
Sbjct: 515 RKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLSEIPNEKFRLYKL 574
Query: 358 ESLLAAQRYCLLTTCRR 374
+ + + Y CRR
Sbjct: 575 KMMAKMEEYLHSRRCRR 591
>gi|281348780|gb|EFB24364.1| hypothetical protein PANDA_020784 [Ailuropoda melanoleuca]
Length = 1113
Score = 341 bits (874), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 178/377 (47%), Positives = 240/377 (63%), Gaps = 6/377 (1%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEK-RDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+++LK YFG+S F+P Q VI ++E+ RD +VVMATG GKSLC+Q PP+ +G+ LV+S
Sbjct: 249 INSLKIYFGHSSFKPVQWKVIHSVLEEGRDNVVVMATGYGKSLCFQFPPVYSGRIGLVIS 308
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ LK + A FLGSAQ SV ++G +++++MTPE C +S
Sbjct: 309 PLISLMEDQVLQLKMSNVPACFLGSAQP-KSVLEDIKSGKYRIVYMTPE-FCSGNLSLLQ 366
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L G+ L AVDEAHCISEWGHDFR ++ L L+ L VP VALTATA+ +R DI
Sbjct: 367 QLQANIGITLIAVDEAHCISEWGHDFRSSFRNLGSLKAILPSVPIVALTATASSSIREDI 426
Query: 180 INSLKLKNPYVTIASFDRKNLFY--GVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
+ SL LKNP +T SFDR NL+ G K N Q V LVQ+ S G I+YC +
Sbjct: 427 VRSLNLKNPQITCTSFDRPNLYLEVGRKTGNIHQDLVQFLVQKTSSSWEFEGPTIIYCPS 486
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K E+++ L++L + GTYH +G K+R E H F+RDEI+ +VAT+AFGMGI+K D+
Sbjct: 487 RKMTEQVTAELQKLKLACGTYHAGLGVKSRREVHHSFMRDEIQCVVATIAFGMGINKADI 546
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHYG PK +ESYYQE GR GRDG+ S C + +A ++ E E R +
Sbjct: 547 RKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLSEIPNEKFRLYKL 606
Query: 358 ESLLAAQRYCLLTTCRR 374
+ + + Y CRR
Sbjct: 607 KMMAKMEEYLHSRRCRR 623
>gi|395847404|ref|XP_003796366.1| PREDICTED: LOW QUALITY PROTEIN: Werner syndrome ATP-dependent
helicase [Otolemur garnettii]
Length = 1432
Score = 340 bits (873), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 178/377 (47%), Positives = 240/377 (63%), Gaps = 6/377 (1%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
V+ LK YFG+S F+P Q VI ++E +RD +VVMATG GKSLC+Q PP+ GK LV++
Sbjct: 533 VTFLKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYAGKIGLVIA 592
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ LK I A FLGSAQ+++ V ++G +Q+++MTPE C +
Sbjct: 593 PLISLMEDQVLQLKMSNIPACFLGSAQSEN-VLNDVKSGKYQIVYMTPE-FCSGNLDLLQ 650
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L G+ L AVDEAHCISEWGHDFR ++ L L+T VP VALTATA+ +R DI
Sbjct: 651 QLEANIGITLIAVDEAHCISEWGHDFRSSFRNLGSLKTTFPSVPVVALTATASSSIREDI 710
Query: 180 INSLKLKNPYVTIASFDRKNLFYGV--KVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
I++L L+NP +T SFDR NL+ V K N Q LV++ G I+YC +
Sbjct: 711 IHALNLRNPQITCTSFDRPNLYLEVLRKTGNIFQDLKQFLVRKTSSEWEFEGPTIIYCHS 770
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K E+++ L++L + GTYH M R+E H F+RDEI+ ++AT+AFGMGI+K D+
Sbjct: 771 RKMTEQVTAELRKLSLSCGTYHAGMSINVRKEVHHRFMRDEIQCVIATIAFGMGINKADI 830
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHYG PK +ESYYQE GR GRDG+ S C L +A ++ A F E Q E R +
Sbjct: 831 RKVIHYGAPKEMESYYQEIGRAGRDGLESSCHLLWAPADLAINRFRLTEIQNETFRLYKL 890
Query: 358 ESLLAAQRYCLLTTCRR 374
+ L +Y + CRR
Sbjct: 891 KMLAKMSKYLNSSKCRR 907
>gi|427416527|ref|ZP_18906710.1| ATP-dependent DNA helicase RecQ [Leptolyngbya sp. PCC 7375]
gi|425759240|gb|EKV00093.1| ATP-dependent DNA helicase RecQ [Leptolyngbya sp. PCC 7375]
Length = 736
Score = 337 bits (864), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 173/381 (45%), Positives = 252/381 (66%), Gaps = 14/381 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ + LK +FGY FR YQ+ +I+++++ +D LV+M TG GKSLCYQLP L+ +VVS
Sbjct: 13 LEAALKHFFGYDDFRHYQRAIIEQVLKNQDVLVIMPTGGGKSLCYQLPALLRLGVTIVVS 72
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIPIS 117
PLI+LMQDQV SL+ GI A FL S+ T + V+ + + G +LL++ PE+ ++ S
Sbjct: 73 PLIALMQDQVRSLEDNGIAATFLNSSLTFNEVRDREQALLRGDIKLLYLAPER--LMNPS 130
Query: 118 FWSKLLK----AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATE 173
FW L + G+ FA+DEAHC+SEWGHDFR EY+QL +L+ VP +ALTATATE
Sbjct: 131 FWPLLEQIQQTVGLSAFAIDEAHCVSEWGHDFRPEYRQLFQLKQQFPQVPVMALTATATE 190
Query: 174 KVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIV 233
+VR DII L+L +P V ++ F+R+NL+Y V + QS+ D L++ ++K +GAG I+
Sbjct: 191 RVRQDIIQQLRLNDPQVFVSGFNRQNLYYEVTPKTK-QSY-DHLLK-LVKQQSGAG--II 245
Query: 234 YCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGID 293
YC++ K V EI+ LKQ G+ A YH + +K R+ FIRD++R++VAT+AFGMGI+
Sbjct: 246 YCLSRKRVNEIAFRLKQDGISALPYHAGLSAKERQGNQEQFIRDDVRIIVATIAFGMGIN 305
Query: 294 KPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQR 353
KPDVR VIHY P+T+ESYYQESGR GRDG + C ++++ ++ A ++ + E ++
Sbjct: 306 KPDVRFVIHYDLPRTIESYYQESGRAGRDGDPANCTVFFSYADVATVEYLISQKPDEQEQ 365
Query: 354 TAIMESLLAAQRYCLLTTCRR 374
+ L Y CRR
Sbjct: 366 RIARQQLRHVINYAESAVCRR 386
>gi|390333039|ref|XP_001184484.2| PREDICTED: uncharacterized protein LOC754123 [Strongylocentrotus
purpuratus]
Length = 1976
Score = 336 bits (862), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 176/377 (46%), Positives = 240/377 (63%), Gaps = 4/377 (1%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ LKK FG++ FRP Q +I I++ +RD VVMATG GKSLCYQ P + TG ++V+S
Sbjct: 969 INALKKSFGHASFRPMQWKIIHSILKNRRDQCVVMATGYGKSLCYQFPSVFTGGVSIVIS 1028
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTD-SSVQTKAETGYFQLLFMTPEKACIIPISFW 119
PLISLM+DQV +L+ I A +LGSAQ D + + G ++L++MTPE +
Sbjct: 1029 PLISLMEDQVQALRIANIKACYLGSAQKDMAQARRNLLKGEYRLVYMTPEFISVATDLIE 1088
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
K G+ L A+DEAHC+S+WGHDFR Y+ L LR L VPF+ALTATAT V+ DI
Sbjct: 1089 DVQRKVGITLVAIDEAHCVSQWGHDFRSAYRTLGNLRQLLPEVPFLALTATATPMVQKDI 1148
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKV-INRGQSFVDELVQEILK-SVAGAGSIIVYCMT 237
SL LKNP VT SFDR NL+ V++ N ++ + ++ E K + G I+YC T
Sbjct: 1149 CRSLHLKNPDVTCTSFDRPNLYLQVQLKTNDVENDLANILIETQKFNYEFDGPTIIYCPT 1208
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K E + LK LGVKA YH M + R+E H F+RDE++ +VAT+AFGMGIDKPDV
Sbjct: 1209 KKATESVGSTLKNLGVKADIYHAGMNPERRKENHHKFVRDELQCIVATVAFGMGIDKPDV 1268
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R+VIHYG PK +ESYYQE GR GRDG+ S C+ +Y+R++F + E ++E +
Sbjct: 1269 RNVIHYGAPKDIESYYQEIGRAGRDGMPSNCFAFYSRADFVLNWHFVREIKSEEFQEHKA 1328
Query: 358 ESLLAAQRYCLLTTCRR 374
+ + + Y + CRR
Sbjct: 1329 KMIKKIEDYVQTSQCRR 1345
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 138/346 (39%), Positives = 190/346 (54%), Gaps = 35/346 (10%)
Query: 37 TGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTK- 95
+G GKSLCYQ P + TG ++++SPLISLM+DQV +L+ I A +LGSAQ D + +
Sbjct: 475 SGYGKSLCYQFPSVFTGGVSIIISPLISLMEDQVQALRIANIKACYLGSAQKDMAQARRN 534
Query: 96 --AETGYFQLLFMTPE---KACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYK 150
Y Q+ T + I I + + L A DE
Sbjct: 535 LLKPNLYLQVQLKTNDVENDLANILIETQNAHYTVTLSLTAQDE---------------- 578
Query: 151 QLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKV-INR 209
VPF+ALTATAT V+ DI SL LKNP VT SFDR NL+ V++ N
Sbjct: 579 -----------VPFLALTATATPMVQKDICRSLHLKNPDVTCTSFDRPNLYLQVQLKTND 627
Query: 210 GQSFVDELVQEILK-SVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKARE 268
++ + ++ E K + G I+YC T K E + LK LGVKA YH M + R+
Sbjct: 628 VENDLANILIETQKFNYEFDGPTIIYCPTKKATESVGSTLKNLGVKADIYHAGMNPERRK 687
Query: 269 EAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVC 328
E H F+RDE++ +VAT+AFGMGIDKPDVR+VIHYG PK +ESYYQE GR GRDG+ S C
Sbjct: 688 ENHHKFVRDELQCIVATVAFGMGIDKPDVRNVIHYGAPKDIESYYQEIGRAGRDGMPSNC 747
Query: 329 WLYYARSNFAKGDFYCGESQTENQRTAIMESLLAAQRYCLLTTCRR 374
+ +Y+R++F + E ++ + + + + Y + CRR
Sbjct: 748 FAFYSRADFVLNWHFVREIKSVEFQEHKAKMIKKIEDYVQTSQCRR 793
>gi|148227808|ref|NP_001081838.1| Werner syndrome ATP-dependent helicase homolog [Xenopus laevis]
gi|29428101|sp|O93530.1|WRN_XENLA RecName: Full=Werner syndrome ATP-dependent helicase homolog;
AltName: Full=Exonuclease WRN; AltName:
Full=Focus-forming activity 1; Short=FFA-1
gi|3420291|gb|AAC63512.1| focus forming activity 1 [Xenopus laevis]
Length = 1436
Score = 336 bits (862), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 179/380 (47%), Positives = 240/380 (63%), Gaps = 11/380 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRII-EKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+S LK YFG+S F+P Q V+ ++ E+RD LVVMATG GKSLCYQ P+ T +V+
Sbjct: 478 ISCLKTYFGHSSFKPVQWKVVHSVLRERRDNLVVMATGYGKSLCYQFAPVYTSGIGIVIC 537
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ L+ I++ FLGSAQ+ + +Q + G ++++MTPE C IS
Sbjct: 538 PLISLMEDQVLQLEMSNISSCFLGSAQSKNVLQD-VKDGKMRVIYMTPE-FCSRGISLLQ 595
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
L + G+ L A+DEAHCISEWGHDFR Y+ L L+ L VP VALTATA+ +R DI
Sbjct: 596 DLDNRYGITLIAIDEAHCISEWGHDFRSAYRSLGSLKRMLPNVPIVALTATASPSIREDI 655
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAG-----SIIVY 234
SL L NP VT SFDR NL+ + V + + +L Q ++K G+G + IVY
Sbjct: 656 TKSLNLHNPQVTCTSFDRPNLY--LDVARKTTNISIDLRQFLIKKQQGSGWEFEGATIVY 713
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C T K E+++ L +LG+ GTYH MG K R E H F+RDEI +VAT+AFGMGI+K
Sbjct: 714 CPTRKTSEQVTAELIKLGIACGTYHAGMGIKQRREVHHRFMRDEIHCVVATVAFGMGINK 773
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
PD+R VIHYG PK +ESYYQE GR GRDG+ S C +A+++ GE + R
Sbjct: 774 PDIRKVIHYGAPKEMESYYQEIGRAGRDGLPSCCHALWAQADMNFNRHMLGEIPNKGFRE 833
Query: 355 AIMESLLAAQRYCLLTTCRR 374
++ L ++Y +TCRR
Sbjct: 834 YKLKMLTKMEKYLNSSTCRR 853
>gi|443316688|ref|ZP_21046123.1| ATP-dependent DNA helicase RecQ [Leptolyngbya sp. PCC 6406]
gi|442783715|gb|ELR93620.1| ATP-dependent DNA helicase RecQ [Leptolyngbya sp. PCC 6406]
Length = 720
Score = 335 bits (860), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 173/381 (45%), Positives = 248/381 (65%), Gaps = 14/381 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ + LK +FGY FR Q+ I+ ++ ++D LVVM TG GKSLCYQLP L+ +VVS
Sbjct: 12 LEAALKHFFGYDQFRLQQRAAIEAVLNQQDALVVMPTGGGKSLCYQLPALLRLGVTIVVS 71
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIPIS 117
PLI+LMQDQV +L GI A FL S+ +++ G +LL++ PE+ ++ +
Sbjct: 72 PLIALMQDQVEALNNNGIAATFLNSSLDLMEARSREYDLLQGRTKLLYVAPER--LLSEN 129
Query: 118 FWSKLLK----AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATE 173
FW L + G+ FA+DEAHC+SEWGHDFR EY+QL +LR+ G+P +ALTATATE
Sbjct: 130 FWPFLTRLQQQVGLAGFAIDEAHCVSEWGHDFRPEYRQLHRLRSAFAGIPMLALTATATE 189
Query: 174 KVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIV 233
+VR DI+ L+L+ P V +ASF+R NL+Y V+ +R Q++ L+Q++ +S+ GAG I+
Sbjct: 190 RVRQDIVQQLQLQKPEVLVASFNRPNLYYEVRPKDR-QTY-GHLLQQV-QSINGAG--II 244
Query: 234 YCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGID 293
YC++ K V+EI+ L+ G+ A YH + R E R FIRD++RVMVAT+AFGMGI+
Sbjct: 245 YCLSRKRVDEIALRLQNDGIAALPYHAGLPDLTRAENQRRFIRDDVRVMVATIAFGMGIN 304
Query: 294 KPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQR 353
KPDVR V+HY P+TLESYYQESGR GRDG + C +Y+ ++ + ++ + E ++
Sbjct: 305 KPDVRFVVHYDLPRTLESYYQESGRAGRDGEPAHCTVYFGYADVSTVNYLIDQKPDEREQ 364
Query: 354 TAIMESLLAAQRYCLLTTCRR 374
+ L Y T CRR
Sbjct: 365 NIARQQLRQVIDYAESTVCRR 385
>gi|49118127|gb|AAH73087.1| FFA-1 protein [Xenopus laevis]
Length = 1434
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 178/380 (46%), Positives = 240/380 (63%), Gaps = 11/380 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRII-EKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+S LK YFG+S F+P Q V+ ++ E+RD LVVMATG GKSLCYQ P+ T +V+
Sbjct: 478 ISCLKTYFGHSSFKPVQWKVVHSVLRERRDNLVVMATGYGKSLCYQFAPVYTSGIGIVIC 537
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ L+ I++ FLGSAQ+ + +Q + G ++++MTPE C IS
Sbjct: 538 PLISLMEDQVLQLEMSNISSCFLGSAQSKNVLQ-DVKDGKMRVIYMTPE-FCSRGISLLQ 595
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
L + G+ L A+DEAHCISEWGHDFR Y+ L L+ L VP VALTATA+ +R DI
Sbjct: 596 DLDNRYGITLIAIDEAHCISEWGHDFRSAYRSLGSLKRMLPNVPIVALTATASPSIREDI 655
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAG-----SIIVY 234
SL L NP VT SFDR NL+ + V + + +L Q ++K G+G + IVY
Sbjct: 656 TKSLNLHNPQVTCTSFDRPNLY--LDVARKTTNISIDLRQFLIKKQQGSGWEFEGATIVY 713
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C T K E+++ L +LG+ GTYH MG K R E H F+RDEI+ +VAT+AFGMGI+K
Sbjct: 714 CPTRKTSEQVTAELIKLGIACGTYHAGMGIKQRREVHHRFMRDEIQCVVATVAFGMGINK 773
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
PD+R VIHYG PK +ESYYQE GR GRDG+ S C + +++ GE + R
Sbjct: 774 PDIRKVIHYGAPKEMESYYQEIGRAGRDGLPSCCHALWTQADMNFNRHMLGEIPNKGFRE 833
Query: 355 AIMESLLAAQRYCLLTTCRR 374
++ L ++Y +TCRR
Sbjct: 834 YKLKMLTKMEKYLNSSTCRR 853
>gi|410670594|ref|YP_006922965.1| ATP-dependent DNA helicase RecQ [Methanolobus psychrophilus R15]
gi|409169722|gb|AFV23597.1| ATP-dependent DNA helicase RecQ [Methanolobus psychrophilus R15]
Length = 705
Score = 333 bits (855), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 167/377 (44%), Positives = 237/377 (62%), Gaps = 10/377 (2%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M TL+KYFGYS FRP QKD+IQ +++ +D V+M TG GKSLCYQLP L+ +V+S
Sbjct: 1 MYQTLQKYFGYSEFRPLQKDIIQDVLDGKDTFVLMPTGGGKSLCYQLPALLMDGLTVVIS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV SL+ G+NA FL S Q + + + T ++L+M PE+ +
Sbjct: 61 PLISLMKDQVDSLRANGVNAAFLNSTQNYTESRKICDDIATNDIKILYMAPERLAMS--G 118
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
S + KA V LFA+DE+HCISEWGHDFR EY++L L+ VP +ALTATAT KVR
Sbjct: 119 TLSMITKAKVSLFAIDESHCISEWGHDFRPEYRKLSMLKKKFPKVPIIALTATATPKVRE 178
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
D +N L L NP IASF+R NL Y ++ + D+++Q + ++ G I+YC +
Sbjct: 179 DTLNQLGLTNPKTYIASFNRSNLLYEIRP---KKETYDQILQYLRRNKGKGG--IIYCQS 233
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K+V+ ++ L++ G A YH + R FI+D+ ++VAT+AFGMGIDKP+V
Sbjct: 234 RKNVDTVTAKLRKAGFNALPYHAGLSDTQRGRNQEAFIKDKADIIVATIAFGMGIDKPNV 293
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHY PK LE YYQE+GR GRDG+ C L+++ + + +++ + + +R +
Sbjct: 294 RFVIHYDLPKNLEGYYQETGRGGRDGLECECILFFSHGDRYRIEYFVKQKGRKEERDIAL 353
Query: 358 ESLLAAQRYCLLTTCRR 374
+ L YC+ TTCRR
Sbjct: 354 KQLQDMVNYCVSTTCRR 370
>gi|428778146|ref|YP_007169933.1| ATP-dependent DNA helicase RecQ [Halothece sp. PCC 7418]
gi|428692425|gb|AFZ45719.1| ATP-dependent DNA helicase RecQ [Halothece sp. PCC 7418]
Length = 709
Score = 333 bits (854), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 173/380 (45%), Positives = 238/380 (62%), Gaps = 12/380 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ + LK+YFGY FRP QK +I+ + ++RD L VM TG GKSLCYQLP L+ A+VVS
Sbjct: 4 LETALKQYFGYETFRPGQKAIIEAVYQQRDVLAVMPTGGGKSLCYQLPALLKPGLAVVVS 63
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIPIS 117
PLI+LMQDQV +L++ GI A FL S+ T +++ + G +LL++ PEK + P S
Sbjct: 64 PLIALMQDQVETLQKNGIAATFLNSSLTAEEARSRRLSILNGEMKLLYLAPEK-LVSPAS 122
Query: 118 ---FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEK 174
+ K G+ LFA+DEAHCISEWGHDFR EY+QL LR+ +P +ALTATATE+
Sbjct: 123 KTFLQAVQEKHGLSLFAIDEAHCISEWGHDFRPEYRQLKTLRSLFPKIPMIALTATATER 182
Query: 175 VRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVY 234
VR DII+ L L P V I SFDR NL+Y V+ R ++L + I GS IVY
Sbjct: 183 VRSDIIHQLTLDQPKVQITSFDRPNLYYEVQPKQR--QHYNQLFKFIRHQT---GSGIVY 237
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C++ + VEE++ LK+ G+ A YH M R + F+RD+++VMVAT+AFGMGIDK
Sbjct: 238 CLSRRRVEEVAFRLKKDGISALPYHAGMSDGNRSDYQTRFLRDDVQVMVATIAFGMGIDK 297
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
PD+R V+HY P+ LE+YYQE+GR GRD + C L + + +++ + + E +
Sbjct: 298 PDIRFVVHYDLPRNLENYYQEAGRAGRDSEPAQCLLLFGAKDIHTIEYFISQKEDEKSQR 357
Query: 355 AIMESLLAAQRYCLLTTCRR 374
+ L Y T CRR
Sbjct: 358 LARQQLRKVIDYAEGTDCRR 377
>gi|406997576|gb|EKE15607.1| hypothetical protein ACD_11C00117G0003 [uncultured bacterium]
Length = 719
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 169/379 (44%), Positives = 237/379 (62%), Gaps = 14/379 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M + LKKYFG+ FRP Q+++I+ ++ KRD V+M TG GKSLCYQLP L LV+S
Sbjct: 1 METILKKYFGFDEFRPLQREIIENVLNKRDTFVLMPTGGGKSLCYQLPALKFPGITLVIS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQ---TKAETGYFQLLFMTPEKACIIPIS 117
PLI+LM+DQV LK G+ AEFL S+ + +Q + + G ++L++ PE+
Sbjct: 61 PLIALMKDQVDFLKASGVAAEFLNSSLSGDEIQRIQKEIKEGKVKILYIAPERMASNGFE 120
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
+ + LK L AVDEAHCISEWGHDFR +Y+ L +L+ GVP +ALTATATEKVR
Sbjct: 121 NFLQNLKP--SLIAVDEAHCISEWGHDFRPDYRNLRRLKDIFPGVPIMALTATATEKVRQ 178
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG--AGSIIVYC 235
DI+N L +NP + I+SF+R NLF+ +VI + SF +++LK + S+I+YC
Sbjct: 179 DILNQLNFENPNIFISSFNRDNLFF--RVIEKKNSF-----EKLLKLLENRRKESVIIYC 231
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
+ KD E ++ L+ G A YH + S R++ FI+D+I ++VAT+AFGMGIDKP
Sbjct: 232 FSRKDTENLALNLRSEGFSALAYHAGLDSAKRKKTQEDFIQDKINIIVATIAFGMGIDKP 291
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTA 355
DVR V+HY PK+LE YYQE GR GRDG+ + C ++Y ++ K ++ EN +
Sbjct: 292 DVRMVVHYTFPKSLEGYYQEVGRAGRDGLPAECVMFYTFADARKHRYFINVMDDENLKRQ 351
Query: 356 IMESLLAAQRYCLLTTCRR 374
L Y L +CRR
Sbjct: 352 TERKLQEVMDYADLNSCRR 370
>gi|428781470|ref|YP_007173256.1| ATP-dependent DNA helicase RecQ [Dactylococcopsis salina PCC 8305]
gi|428695749|gb|AFZ51899.1| ATP-dependent DNA helicase RecQ [Dactylococcopsis salina PCC 8305]
Length = 713
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 178/382 (46%), Positives = 242/382 (63%), Gaps = 16/382 (4%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ ++LK+YFGY FRP QKDVIQ + ++D LVVM TG GKSLCYQLP L+ A+VVS
Sbjct: 6 LETSLKQYFGYDQFRPGQKDVIQAVCNQQDVLVVMPTGGGKSLCYQLPALLKPGLAVVVS 65
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIPIS 117
PLI+LMQDQV SL++ GI A FL S+ + +++ + G +LL++ PEK + S
Sbjct: 66 PLIALMQDQVESLQKNGIAATFLNSSLNPNEARSRRLSILQGNIKLLYLAPEK---LVSS 122
Query: 118 FWSKLLKA-----GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATAT 172
K L+A G+ LFAVDEAHCISEWGHDFR EY+QL+ LR VP +ALTATAT
Sbjct: 123 GAKKFLQAVSEKQGLSLFAVDEAHCISEWGHDFRPEYRQLETLRQQFPEVPTIALTATAT 182
Query: 173 EKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSII 232
E+VR DII LKLK P + I SFDR NL+Y V+ R ++L + ++ G+G I
Sbjct: 183 EQVRGDIIRQLKLKPPKIQITSFDRPNLYYEVQPKQR--QHYNQLFK-FIRHQNGSG--I 237
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
VYC++ + VEE++ L++ G+ A YH M R + F+RD+++VMVAT+AFGMGI
Sbjct: 238 VYCLSRRRVEEVAFRLEKDGISALPYHAGMTDGNRRDYQTRFLRDDVQVMVATIAFGMGI 297
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ 352
DKPD+R V HY P+ LE+YYQE+GR GRD + C L + + ++ + + E
Sbjct: 298 DKPDIRFVAHYDLPRNLENYYQEAGRAGRDNEPAQCLLLFGAKDIHTIEYLISQKEEEKS 357
Query: 353 RTAIMESLLAAQRYCLLTTCRR 374
+ + L Y T CRR
Sbjct: 358 QRLARQQLRKMIDYAEGTDCRR 379
>gi|428224630|ref|YP_007108727.1| ATP-dependent DNA helicase RecQ [Geitlerinema sp. PCC 7407]
gi|427984531|gb|AFY65675.1| ATP-dependent DNA helicase RecQ [Geitlerinema sp. PCC 7407]
Length = 741
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 169/387 (43%), Positives = 243/387 (62%), Gaps = 19/387 (4%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ LK +FGY FRP Q+++++ +++RD +V+M TG GKSLC+QLP L+ ++VVS
Sbjct: 15 LEDALKHFFGYESFRPGQREIVEAALDRRDVMVIMPTGGGKSLCFQLPALLNSGVSVVVS 74
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPIS 117
PLI+LMQDQV SL++ G+ A FL S+ + V+++ G +LL++ PE+
Sbjct: 75 PLIALMQDQVASLQKNGVGATFLNSSISGEEVRSRQNEILDGRIKLLYVAPERLLNEQFL 134
Query: 118 FWSKLLK--AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
W ++ G+ F +DEAHC+SEWGHDFR EY+QL ++R VP +ALTATAT++V
Sbjct: 135 LWLNDVRQQVGLSTFVIDEAHCVSEWGHDFRPEYRQLLQIRQRFPEVPVMALTATATDRV 194
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYC 235
R D+ L L+ PYV IASF+R NL+Y V+ +G++ DEL+Q+I GS IVYC
Sbjct: 195 RQDMGEQLALRQPYVHIASFNRPNLYYEVR--PKGKNSYDELLQKIRHV---EGSCIVYC 249
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
++ + V E++ L+Q G++A YH + R E FIRD++RV+VAT+AFGMGI+KP
Sbjct: 250 LSRRRVNELTTRLQQEGIEALPYHAGLSDDVRTENQTRFIRDDVRVIVATIAFGMGINKP 309
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDF--------YCGES 347
DVR V+HY P+ +E+YYQESGR GRDG + C L+Y + D+ GE
Sbjct: 310 DVRLVMHYDLPRNIEAYYQESGRAGRDGETAQCLLFYGPGDIKSLDWIIDQKVHPVTGEP 369
Query: 348 QTENQRTAIMESLLAAQRYCLLTTCRR 374
+ QR A + L Y T CRR
Sbjct: 370 LEQEQRIA-RQQLRQVIDYAESTVCRR 395
>gi|301619865|ref|XP_002939304.1| PREDICTED: Werner syndrome ATP-dependent helicase homolog [Xenopus
(Silurana) tropicalis]
Length = 1431
Score = 330 bits (847), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 176/379 (46%), Positives = 236/379 (62%), Gaps = 10/379 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRII-EKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
VS LK YFG+S F+P Q VI ++ E+RD LVVMATG GKSLCYQ P+ T +V+
Sbjct: 476 VSCLKTYFGHSSFKPVQWKVIHSVLRERRDNLVVMATGYGKSLCYQFAPVYTSGIGIVIC 535
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ L+ I + FLGSAQ+ + +Q + G ++++MTPE C IS
Sbjct: 536 PLISLMEDQVLQLEMSNIPSCFLGSAQSKNVLQ-DVKAGRMRVIYMTPE-FCSGGISLLQ 593
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
L + G+ L A+DEAHCISEWGHDFR Y+ L L+ L VP VALTATA+ +R DI
Sbjct: 594 DLDNRYGITLIAIDEAHCISEWGHDFRSAYRSLGSLKRMLPTVPIVALTATASPSIREDI 653
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGA----GSIIVYC 235
SL L NP +T SFDR NL+ + V + + +L Q ++K G+ IVYC
Sbjct: 654 SKSLSLHNPQITCTSFDRPNLY--LDVAKKTTNISTDLQQFLIKKQGSGWEFEGATIVYC 711
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
T K E+++ L +LG+ GTYH MG K R + H F+RDEI+ +VAT+AFGMGI+KP
Sbjct: 712 PTRKTSEQVTAELTKLGIACGTYHAGMGIKQRRDVHHRFMRDEIQCVVATVAFGMGINKP 771
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTA 355
D+R VIHYG PK +ESYYQE GR GRDG+ S C + +++ GE + R
Sbjct: 772 DIRKVIHYGAPKEMESYYQEIGRAGRDGLPSCCHALWTQADINFNRHMLGEIPNNSFREY 831
Query: 356 IMESLLAAQRYCLLTTCRR 374
++ L ++Y + CRR
Sbjct: 832 KLKMLTKMEKYLNSSNCRR 850
>gi|89267461|emb|CAJ83573.1| Werner syndrome homolog (human) [Xenopus (Silurana) tropicalis]
Length = 1171
Score = 330 bits (846), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 176/379 (46%), Positives = 236/379 (62%), Gaps = 10/379 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRII-EKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
VS LK YFG+S F+P Q VI ++ E+RD LVVMATG GKSLCYQ P+ T +V+
Sbjct: 469 VSCLKTYFGHSSFKPVQWKVIHSVLRERRDNLVVMATGYGKSLCYQFAPVYTSGIGIVIC 528
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ L+ I + FLGSAQ+ + +Q + G ++++MTPE C IS
Sbjct: 529 PLISLMEDQVLQLEMSNIPSCFLGSAQSKNVLQD-VKAGRMRVIYMTPE-FCSGGISLLQ 586
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
L + G+ L A+DEAHCISEWGHDFR Y+ L L+ L VP VALTATA+ +R DI
Sbjct: 587 DLDNRYGITLIAIDEAHCISEWGHDFRSAYRSLGSLKRMLPTVPIVALTATASPSIREDI 646
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGA----GSIIVYC 235
SL L NP +T SFDR NL+ + V + + +L Q ++K G+ IVYC
Sbjct: 647 SKSLSLHNPQITCTSFDRPNLY--LDVAKKTTNISTDLQQFLIKKQGSGWEFEGATIVYC 704
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
T K E+++ L +LG+ GTYH MG K R + H F+RDEI+ +VAT+AFGMGI+KP
Sbjct: 705 PTRKTSEQVTAELTKLGIACGTYHAGMGIKQRRDVHHRFMRDEIQCVVATVAFGMGINKP 764
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTA 355
D+R VIHYG PK +ESYYQE GR GRDG+ S C + +++ GE + R
Sbjct: 765 DIRKVIHYGAPKEMESYYQEIGRAGRDGLPSCCHALWTQADINFNRHMLGEIPNNSFREY 824
Query: 356 IMESLLAAQRYCLLTTCRR 374
++ L ++Y + CRR
Sbjct: 825 KLKMLTKMEKYLNSSNCRR 843
>gi|428771662|ref|YP_007163452.1| ATP-dependent DNA helicase RecQ [Cyanobacterium aponinum PCC 10605]
gi|428685941|gb|AFZ55408.1| ATP-dependent DNA helicase RecQ [Cyanobacterium aponinum PCC 10605]
Length = 707
Score = 330 bits (845), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 168/376 (44%), Positives = 237/376 (63%), Gaps = 10/376 (2%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
+LKKYFGY FR Q+++IQ + RD L++M TG GKSLC+QLP L+ +V+SPLI
Sbjct: 7 SLKKYFGYDSFREGQEEIIQNALNNRDLLIIMPTGGGKSLCFQLPALLKKGVTIVISPLI 66
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPI-SFW 119
SLMQDQVMSL GI A F+ S ++ + + +G +LL++ PE+ SF
Sbjct: 67 SLMQDQVMSLHDNGIGATFINSTLDFQEIKHREQLILSGKIKLLYLAPERLISEKFQSFL 126
Query: 120 SKLLKAG-VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + K + FA+DEAHCISEWGHDFRLEY+QL +LR +P ALTATAT +V+ D
Sbjct: 127 NTVAKTNAIASFAIDEAHCISEWGHDFRLEYRQLRQLRQRFPQIPITALTATATPRVQQD 186
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
II L+L+NP + SF+R NL+Y V+ R + +++Q ++ S+ G+G I+YC+
Sbjct: 187 IIQQLRLRNPIIRRFSFNRPNLYYEVRP--REKRNYHQILQ-LINSLEGSG--IIYCLAR 241
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K E+++ L+Q + A YHG + + R FIRD+ R+MVAT+AFGMGI+KPDVR
Sbjct: 242 KTTEDLAYRLRQDNISALPYHGGLTDEMRSHHQDCFIRDDARIMVATVAFGMGINKPDVR 301
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
VIH+ P+ +ESYYQESGR GRDG + C L Y S+ K +++ + + N++ E
Sbjct: 302 FVIHHDLPRNIESYYQESGRAGRDGEPAKCILLYNPSDEYKINYFIKQKENINEQKQARE 361
Query: 359 SLLAAQRYCLLTTCRR 374
L Q Y CRR
Sbjct: 362 QLKKVQEYAETNYCRR 377
>gi|326918448|ref|XP_003205500.1| PREDICTED: LOW QUALITY PROTEIN: Werner syndrome ATP-dependent
helicase-like [Meleagris gallopavo]
Length = 1569
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 170/380 (44%), Positives = 242/380 (63%), Gaps = 11/380 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+S LK YFG+S F+P Q VI+ ++E KRD LVVMATG GKSLCYQ PP+ TG T +V+
Sbjct: 587 ISCLKMYFGHSSFKPVQWKVIRSVLEDKRDNLVVMATGYGKSLCYQFPPVYTGSTGIVIC 646
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ L GI++ LGSAQ+ ++ + G +++++MTPE C +
Sbjct: 647 PLISLMEDQVLQLTMSGISSCLLGSAQS-KDIKESVKAGLYRVIYMTPE-FCSGNLELLQ 704
Query: 121 KLLKA-GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+ + G+ L A+DEAHCISEWGHDFR +++L+ L+ L VP VALTATA+ +R DI
Sbjct: 705 DIDRTIGIALIAIDEAHCISEWGHDFRNSFRKLNSLKKALPSVPIVALTATASPSIREDI 764
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGA-----GSIIVY 234
+N L LKNP +T SFDR NL+ ++V + + + +L Q + + + + G IVY
Sbjct: 765 VNCLNLKNPQITCTSFDRPNLY--LEVGRQSGNILRDLKQFLSRKGSSSTYEFEGPTIVY 822
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C + K E++ L +LGV G YH MG + R + H F+RDEI+ +VAT+AFGMGI+K
Sbjct: 823 CPSRKATEQVLFELNKLGVTCGAYHAGMGIQKRRDTHHQFMRDEIQCVVATVAFGMGINK 882
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
D+R VIHYG PK +ESYYQE GR GRDG+ + C + + ++ E E R+
Sbjct: 883 ADIRMVIHYGAPKEMESYYQEIGRAGRDGLPASCHVLWTAADLVLNRRLLNEIHNEKFRS 942
Query: 355 AIMESLLAAQRYCLLTTCRR 374
++ L ++Y +CRR
Sbjct: 943 YKLKMLEKMEKYLSSNSCRR 962
>gi|363733349|ref|XP_001235033.2| PREDICTED: LOW QUALITY PROTEIN: Werner syndrome ATP-dependent
helicase homolog [Gallus gallus]
Length = 1498
Score = 329 bits (843), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 171/380 (45%), Positives = 241/380 (63%), Gaps = 11/380 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ LK YFG+S F+P Q VI ++E KRD LVVMATG GKSLCYQ PP+ TG T +V+
Sbjct: 516 IACLKTYFGHSSFKPVQWKVIHSVLEDKRDNLVVMATGYGKSLCYQFPPVYTGGTGIVIC 575
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ L GI++ LGSAQ+ V+ + G +++++MTPE C +
Sbjct: 576 PLISLMEDQVLQLTMSGISSCLLGSAQS-KDVKDNIKAGLYRVIYMTPE-FCSGNLELLQ 633
Query: 121 KLLKA-GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+ + G+ L AVDEAHCISEWGHDFR+ +++L+ L+ L VP VALTATA+ +R DI
Sbjct: 634 DIDRTTGIALIAVDEAHCISEWGHDFRISFRKLNSLKKALPSVPIVALTATASPSIREDI 693
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGA-----GSIIVY 234
+N L LKNP VT SFDR NL+ ++V + + + +L Q + + + + G I+Y
Sbjct: 694 VNCLNLKNPQVTCTSFDRPNLY--LEVGRQSGNTLRDLKQFLTRKGSSSTYEFEGPTIIY 751
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C + K E++ L +LGV G YH MG + R + H F+RDEI+ +VAT+AFGMGI+K
Sbjct: 752 CPSRKATEQVMFELNKLGVTCGAYHAGMGIQKRRDTHHQFMRDEIQCVVATVAFGMGINK 811
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
D+R VIHYG PK +ESYYQE GR GRDG+ + C + + ++ E E R
Sbjct: 812 ADIRMVIHYGAPKEMESYYQEIGRAGRDGLPASCHVLWTAADLVLNRRLLNEIHNEKFRL 871
Query: 355 AIMESLLAAQRYCLLTTCRR 374
++ L ++Y +CRR
Sbjct: 872 YKLKMLEKMEKYLSSNSCRR 891
>gi|290490726|dbj|BAI79323.1| WRN helicase [Gallus gallus]
Length = 1498
Score = 329 bits (843), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 171/380 (45%), Positives = 241/380 (63%), Gaps = 11/380 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ LK YFG+S F+P Q VI ++E KRD LVVMATG GKSLCYQ PP+ TG T +V+
Sbjct: 516 IACLKTYFGHSSFKPVQWKVIHSVLEDKRDNLVVMATGYGKSLCYQFPPVYTGGTGIVIC 575
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ L GI++ LGSAQ+ V+ + G +++++MTPE C +
Sbjct: 576 PLISLMEDQVLQLTMSGISSCLLGSAQS-KDVKDNIKAGLYRVIYMTPE-FCSGNLELLQ 633
Query: 121 KLLKA-GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+ + G+ L AVDEAHCISEWGHDFR+ +++L+ L+ L VP VALTATA+ +R DI
Sbjct: 634 DIDRTTGIALIAVDEAHCISEWGHDFRISFRKLNSLKKALPSVPIVALTATASPSIREDI 693
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGA-----GSIIVY 234
+N L LKNP VT SFDR NL+ ++V + + + +L Q + + + + G I+Y
Sbjct: 694 VNCLNLKNPQVTCTSFDRPNLY--LEVGRQSGNTLRDLKQFLTRKGSSSTYEFEGPTIIY 751
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C + K E++ L +LGV G YH MG + R + H F+RDEI+ +VAT+AFGMGI+K
Sbjct: 752 CPSRKATEQVMFELNKLGVTCGAYHAGMGIQKRRDTHHQFMRDEIQCVVATVAFGMGINK 811
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
D+R VIHYG PK +ESYYQE GR GRDG+ + C + + ++ E E R
Sbjct: 812 ADIRMVIHYGAPKEMESYYQEIGRAGRDGLPASCHVLWTAADLVLNRRLLNEIHNEKFRL 871
Query: 355 AIMESLLAAQRYCLLTTCRR 374
++ L ++Y +CRR
Sbjct: 872 YKLKMLEKMEKYLSSNSCRR 891
>gi|395541837|ref|XP_003772843.1| PREDICTED: Werner syndrome ATP-dependent helicase [Sarcophilus
harrisii]
Length = 1448
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 171/374 (45%), Positives = 242/374 (64%), Gaps = 6/374 (1%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
LK YFG+S F+P Q VI ++E +RD LVVMATG GKSLC+Q PP+ G ++VVSPLI
Sbjct: 560 LKTYFGHSSFKPMQWKVIHSVLEERRDNLVVMATGYGKSLCFQFPPVFVGGISIVVSPLI 619
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKL- 122
SLM+DQV+ L+ I A FLGSAQ+++ ++ + G ++++++TPE C+ ++ +L
Sbjct: 620 SLMEDQVLQLEMSNIKACFLGSAQSENVIK-HVKAGEYRVVYITPE-FCLGNLNLLKQLD 677
Query: 123 LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINS 182
G+ L AVDEAHC+SEWGHDFR ++ L L+T L VP +ALTATA+ +R DI++
Sbjct: 678 ADLGITLIAVDEAHCVSEWGHDFRNSFRNLGSLKTTLPLVPVLALTATASSSIRTDIMHC 737
Query: 183 LKLKNPYVTIASFDRKNLFY--GVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L+NP VT SFDR NL+ G K N Q LV++ S G I+YC + K
Sbjct: 738 LNLRNPQVTCTSFDRPNLYLEVGRKTGNILQDLDRFLVKKTGSSWEFEGPTIIYCPSRKI 797
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
E+++ L++L + GTYH +G K R E H F+RDEI+ ++AT+AFGMGI+K D+R V
Sbjct: 798 SEQVTAELQKLNLACGTYHAGLGIKLRREIHHKFMRDEIQCVIATVAFGMGINKADIRKV 857
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHYG PK +ESYYQE GR GRDG+ S C + +A ++ GE Q + R ++ +
Sbjct: 858 IHYGAPKEMESYYQEMGRAGRDGLPSACHVLWAPADINFNRHLIGEIQNVDFRQYKLKMM 917
Query: 361 LAAQRYCLLTTCRR 374
++Y + CRR
Sbjct: 918 RKLEKYLQSSRCRR 931
>gi|376003245|ref|ZP_09781059.1| ATP-dependent DNA helicase [Arthrospira sp. PCC 8005]
gi|375328405|emb|CCE16812.1| ATP-dependent DNA helicase [Arthrospira sp. PCC 8005]
Length = 739
Score = 328 bits (841), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 168/375 (44%), Positives = 240/375 (64%), Gaps = 11/375 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK+YFGY FRP Q+++I+++++KRD L +M TG GKSLC+QLP L+ LVVSPLI+
Sbjct: 18 LKQYFGYDSFRPGQQEIIEQVLQKRDVLAIMPTGGGKSLCFQLPALLKPGLTLVVSPLIA 77
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIP--ISFW 119
LMQDQV +LK GI A FL S + + G +LL++ PE+ + P + F
Sbjct: 78 LMQDQVEALKDNGIGATFLNSTVDIHEARQRESAILQGQIKLLYVAPER-LLSPQFLEFL 136
Query: 120 SKLLKA-GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+L A G+ +DEAHC+S+WGHDFR EY+Q+ ++R+ VP +ALTATATE+VR D
Sbjct: 137 DRLEAAFGISTLVIDEAHCVSDWGHDFRPEYRQIQQVRSRYPHVPAIALTATATERVRFD 196
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
II + LK PYV +ASF R NL+Y V + F L ++++S++G+G I+YC +
Sbjct: 197 IIKQIVLKQPYVHVASFYRSNLYYQVIPKQPKKRFTQLL--KVIESMSGSG--IIYCSSR 252
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K VEE++ L+ ++A YH M R E+H FIRD++R++VAT+AFGMGIDKPDVR
Sbjct: 253 KRVEEVALKLQHHNIQALPYHAGMADSDRLESHTRFIRDDVRIIVATIAFGMGIDKPDVR 312
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
VIHY PK+LE+YYQESGR GRDG + C L+++ + ++ + +++ +
Sbjct: 313 FVIHYDLPKSLENYYQESGRAGRDGQPAQCLLFFSYGDMKTIEYLIEQKPDVDEQRIARQ 372
Query: 359 SLLAAQRYCLLTTCR 373
L Y T CR
Sbjct: 373 QLRQVIDYAESTECR 387
>gi|410956163|ref|XP_003984713.1| PREDICTED: Werner syndrome ATP-dependent helicase, partial [Felis
catus]
Length = 1190
Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 176/377 (46%), Positives = 236/377 (62%), Gaps = 6/377 (1%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ LKKYFG+S F+P Q VI ++E +RD +VVMATG GKSLC+Q PP+ GK LV+S
Sbjct: 287 INFLKKYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQFPPVYVGKIGLVIS 346
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ L+ I A FLGSAQ+ +V + G +Q++++TPE C +S
Sbjct: 347 PLISLMEDQVLQLQMSNIPACFLGSAQS-KNVLEDIKLGKYQIVYVTPE-FCSGNLSLLQ 404
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L G+ L AVDEAHCISEWGHDFR ++ L L+ L VP VA+TATA+ +R DI
Sbjct: 405 QLEANIGITLIAVDEAHCISEWGHDFRNSFRTLGSLKKALPTVPIVAVTATASSSIREDI 464
Query: 180 INSLKLKNPYVTIASFDRKNLFY--GVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
I+ LKLKNP +T FDR NL+ G K N Q LVQ+ + G I+YC +
Sbjct: 465 IHCLKLKNPQITCTGFDRPNLYLEVGRKSGNILQDLKQFLVQKTSSTWEFEGPTIIYCPS 524
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K EE++ L+++ + GTYH M AR E H F+RDEI+ +VAT+AFGMGI+K D+
Sbjct: 525 RKMTEEVTAELRKVKLACGTYHAGMCVTARREVHHRFMRDEIQCVVATIAFGMGINKADI 584
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHYG PK +ESYYQE GR GRDG+ S C + +A + + +E R +
Sbjct: 585 RKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPVDIQSNRNLLSQIPSEKFRLYKL 644
Query: 358 ESLLAAQRYCLLTTCRR 374
+ + Y L CRR
Sbjct: 645 NMVAKMENYLLSRRCRR 661
>gi|334330890|ref|XP_001372295.2| PREDICTED: LOW QUALITY PROTEIN: Werner syndrome ATP-dependent
helicase [Monodelphis domestica]
Length = 1391
Score = 327 bits (839), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 169/376 (44%), Positives = 242/376 (64%), Gaps = 10/376 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRII-EKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
LK YFG+S F+P Q VI ++ E+RD LVVMATG GKSLC+Q PP+ G +VVSPLI
Sbjct: 574 LKTYFGHSSFKPVQWKVIHSVLQERRDNLVVMATGYGKSLCFQFPPVFVGGIGIVVSPLI 633
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKL- 122
SLM+DQV+ L+ I A FLGSAQ+++ V ++ + G F++++MTPE C++ + +L
Sbjct: 634 SLMEDQVLQLEMSNIKACFLGSAQSEN-VISRVKAGEFRVVYMTPE-FCLVSLDLLKQLD 691
Query: 123 LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINS 182
G+ L AVDEAHC+SEWGHDFR ++ L L+T L VP +ALTATA+ +R DI +
Sbjct: 692 ATLGITLVAVDEAHCVSEWGHDFRNAFRNLGLLKTTLPSVPMLALTATASSSIRADIAHC 751
Query: 183 LKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG----AGSIIVYCMTI 238
L L++P VT SFDR NL+ V + S + +L + ++K G I+YC +
Sbjct: 752 LYLRDPQVTCTSFDRPNLYLDVG--PKTGSILRDLDKFLVKKPGSCWEFEGPTIIYCPSR 809
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K E+++ L++L + GTYH MG K+R E H F+RDEI+ ++AT+AFGMGI+K D+R
Sbjct: 810 KISEQVTVELRKLDLACGTYHAGMGIKSRREIHHKFMRDEIQCVIATVAFGMGINKADIR 869
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
VIHYG PK +ESYYQE GR GRDG+ S C + + ++ + Q +N R ++
Sbjct: 870 KVIHYGAPKEMESYYQEIGRAGRDGLPSACHVLWTPADINFNRLLLSDIQNDNFRQYKLK 929
Query: 359 SLLAAQRYCLLTTCRR 374
+ ++Y + CRR
Sbjct: 930 MMRQLEKYLQSSNCRR 945
>gi|17227701|ref|NP_484249.1| ATP-dependent DNA helicase [Nostoc sp. PCC 7120]
gi|17135183|dbj|BAB77729.1| ATP-dependent DNA helicase [Nostoc sp. PCC 7120]
Length = 718
Score = 327 bits (839), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 177/382 (46%), Positives = 245/382 (64%), Gaps = 24/382 (6%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK +FGY FRP Q+ +I+ ++ RD +VVM TG GKSLC+QLP L+ +VVSPLI+
Sbjct: 11 LKYHFGYDNFRPGQRQIIEDALQNRDLMVVMPTGGGKSLCFQLPALMKQGLTVVVSPLIA 70
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKAC---IIPISF 118
LMQDQV +L+ I+A FL S+ V+++ E G +LL++ PE+ +P
Sbjct: 71 LMQDQVEALRNNNISATFLNSSLNAYQVRSREEAILNGKVRLLYVAPERLLSERFLPFLD 130
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
K K G+ +FA+DEAHC+SEWGHDFR EY+QL LR VP +ALTATAT++VR D
Sbjct: 131 LVKE-KVGISIFAIDEAHCVSEWGHDFRPEYRQLKSLRKRYPNVPVLALTATATDRVRAD 189
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
II L LK P + +ASF+R+NL+Y V+ ++ Q++ + L E+++ GS I+YC+T
Sbjct: 190 IIQQLGLKQPSIHLASFNRQNLYYEVRPKSK-QAYAELL--ELIRD--NEGSTIIYCLTR 244
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K VEE++ L++ + A +YH + R + FIRD++RVMVAT+AFGMGI+KPDVR
Sbjct: 245 KKVEELTFKLQKDKISALSYHAGLPDDERSKNQTRFIRDDVRVMVATIAFGMGINKPDVR 304
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+H+ P+ LESYYQESGR GRDG AS C ++ F+ GD E E Q+T E
Sbjct: 305 LVVHFDIPRNLESYYQESGRAGRDGEASRCTIF-----FSFGDIKTIEWSIE-QKTDPQE 358
Query: 359 SLLAAQR------YCLLTTCRR 374
L+A Q+ Y T CRR
Sbjct: 359 QLIAKQQLRQMIDYAEGTDCRR 380
>gi|428320783|ref|YP_007118665.1| ATP-dependent DNA helicase RecQ [Oscillatoria nigro-viridis PCC
7112]
gi|428244463|gb|AFZ10249.1| ATP-dependent DNA helicase RecQ [Oscillatoria nigro-viridis PCC
7112]
Length = 731
Score = 327 bits (838), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 170/378 (44%), Positives = 236/378 (62%), Gaps = 14/378 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
LK +FGY FRP Q+++++ ++KRD ++VM TG GKSLC+QLP L+ +VVSPLI
Sbjct: 18 ALKHFFGYDSFRPGQQEIVEAALQKRDMMIVMPTGGGKSLCFQLPALLKPGLTVVVSPLI 77
Query: 64 SLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
+LMQDQV +L+ GI A FL S Q S +T G +LL++ PE+ ++ F
Sbjct: 78 ALMQDQVEALQDNGIGATFLNSTLSTQETRSRETAILEGKIKLLYVAPER--LLGERFLP 135
Query: 121 KL----LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
L K G+ FA+DEAHC+SEWGHDFR EY+Q+ ++R +P +ALTATATE+VR
Sbjct: 136 FLDIVANKLGISAFAIDEAHCVSEWGHDFRPEYRQMQRVRDRYPDIPIMALTATATERVR 195
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DII L L+NPY+ +ASF+R NL+Y V+ + SF + V +I++ G+G I+YC+
Sbjct: 196 QDIIQQLTLRNPYIHVASFNRPNLYYEVRPKTK-HSFAE--VLQIIQKKGGSG--IIYCL 250
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K VEE++ L+Q G+ A YH M R FIRD+++VMVAT+AFGMGI+KPD
Sbjct: 251 SRKKVEEVAYKLQQSGIAALPYHAGMNDVDRATNQTRFIRDDVQVMVATIAFGMGINKPD 310
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY PK LE YYQESGR GRD + C L++ + D+ + ++
Sbjct: 311 VRFVIHYDLPKNLEGYYQESGRAGRDNEPAHCSLFFGYGDVKMIDYIIEQKPDPQEQRIA 370
Query: 357 MESLLAAQRYCLLTTCRR 374
+ L Y T CRR
Sbjct: 371 RQQLRRVINYAESTDCRR 388
>gi|209527293|ref|ZP_03275803.1| ATP-dependent DNA helicase RecQ [Arthrospira maxima CS-328]
gi|209492281|gb|EDZ92626.1| ATP-dependent DNA helicase RecQ [Arthrospira maxima CS-328]
Length = 739
Score = 327 bits (837), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 168/375 (44%), Positives = 239/375 (63%), Gaps = 11/375 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK+YFGY FRP Q+++I+++++KRD L +M TG GKSLC+QLP L+ LVVSPLI+
Sbjct: 18 LKQYFGYDSFRPGQQEIIEQVLQKRDVLAIMPTGGGKSLCFQLPALLKPGLTLVVSPLIA 77
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIP--ISFW 119
LMQDQV +LK GI A FL S + + G +LL++ PE+ + P + F
Sbjct: 78 LMQDQVEALKDNGIGATFLNSTVDIHEARQRESAILQGQIKLLYVAPER-LLSPQFLEFL 136
Query: 120 SKLLKA-GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+L A G+ +DEAHC+S+WGHDFR EY+Q+ ++R+ VP +ALTATATE+VR D
Sbjct: 137 DRLEAAFGISTLVIDEAHCVSDWGHDFRPEYRQIQQVRSRYPHVPAIALTATATERVRFD 196
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
II + LK PYV +ASF R NL+Y V + F L ++++S++G+G I+YC +
Sbjct: 197 IIKQIVLKQPYVHVASFYRSNLYYQVIPKQPKKRFPQLL--KVIESMSGSG--IIYCSSR 252
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K VEE++ L+ + A YH M R E+H FIRD++R++VAT+AFGMGIDKPDVR
Sbjct: 253 KRVEEVALKLQHNNIPALPYHAGMADSDRLESHTRFIRDDVRIIVATIAFGMGIDKPDVR 312
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
VIHY PK+LE+YYQESGR GRDG + C L+++ + ++ + +++ +
Sbjct: 313 FVIHYDLPKSLENYYQESGRAGRDGQPAQCLLFFSYGDMKTIEYLIEQKPDVDEQRIARQ 372
Query: 359 SLLAAQRYCLLTTCR 373
L Y T CR
Sbjct: 373 QLRQVIDYAESTECR 387
>gi|449499575|ref|XP_002193489.2| PREDICTED: Werner syndrome ATP-dependent helicase homolog
[Taeniopygia guttata]
Length = 1497
Score = 327 bits (837), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 175/377 (46%), Positives = 237/377 (62%), Gaps = 11/377 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
LK YFG+S F+P Q VI ++E +RD LVVMATG GKSLCYQ PP+ TG T +V+ PLI
Sbjct: 581 LKTYFGHSSFKPVQWKVINSLLEDRRDNLVVMATGYGKSLCYQFPPVYTGHTGVVICPLI 640
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLL 123
SLM+DQV+ L GI A FLGSAQ+ V+ G +++++MTPE C + L
Sbjct: 641 SLMEDQVLQLTMTGIPACFLGSAQS-KQVKDSIRGGQYRVIYMTPE-FCSGNLQLLRDLN 698
Query: 124 KA-GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINS 182
+ G+ L AVDEAHCISEWGHDFR ++ L L+ L VP +ALTATA+ +R DI+
Sbjct: 699 QTVGITLIAVDEAHCISEWGHDFRSSFRNLGILKKALPLVPIIALTATASPSIREDIVKC 758
Query: 183 LKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGA-----GSIIVYCMT 237
L L+NP VT SFDR NL+ ++V + +L Q +++ + + G I+YC T
Sbjct: 759 LDLRNPQVTCTSFDRPNLY--LEVGQQSGDICRDLKQFLIRKGSSSVYEFEGPTIIYCPT 816
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K E++ AL +L V GTYH M SK R + H F+RDEI+ +VAT+AFGMGI+K D+
Sbjct: 817 RKATEQVVCALNKLNVACGTYHAGMESKQRRDTHHQFMRDEIQCVVATVAFGMGINKADI 876
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHYG PK +ESYYQE GR GRDG+ + C + +A ++ GE + E R +
Sbjct: 877 RLVIHYGAPKEMESYYQEMGRAGRDGLPAACHVLWAATDLVSNRRLLGEIRNEAFRLYKL 936
Query: 358 ESLLAAQRYCLLTTCRR 374
+ L ++Y + CRR
Sbjct: 937 KMLEKMEKYLVSNGCRR 953
>gi|423066192|ref|ZP_17054982.1| ATP-dependent DNA helicase RecQ [Arthrospira platensis C1]
gi|406712234|gb|EKD07423.1| ATP-dependent DNA helicase RecQ [Arthrospira platensis C1]
Length = 739
Score = 327 bits (837), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 168/375 (44%), Positives = 239/375 (63%), Gaps = 11/375 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK+YFGY FRP Q+++I+++++KRD L +M TG GKSLC+QLP L+ LVVSPLI+
Sbjct: 18 LKQYFGYDSFRPGQQEIIEQVLQKRDVLAIMPTGGGKSLCFQLPALLKPGLTLVVSPLIA 77
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIP--ISFW 119
LMQDQV +LK GI A FL S + + G +LL++ PE+ + P + F
Sbjct: 78 LMQDQVEALKDNGIGATFLNSTVDIHEARQRESAILQGQIKLLYVAPER-LLSPQFLDFL 136
Query: 120 SKLLKA-GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+L A G+ +DEAHC+S+WGHDFR EY+Q+ ++R+ VP +ALTATATE+VR D
Sbjct: 137 DRLEAAFGISTLVIDEAHCVSDWGHDFRPEYRQIQQVRSRYPHVPAIALTATATERVRFD 196
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
II + LK PYV +ASF R NL+Y V + F L ++++S++G+G I+YC +
Sbjct: 197 IIKQIVLKQPYVHVASFYRSNLYYQVIPKQPKKRFPQLL--KVIESMSGSG--IIYCSSR 252
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K VEE++ L+ + A YH M R E+H FIRD++R++VAT+AFGMGIDKPDVR
Sbjct: 253 KRVEEVALQLQHNNIPALPYHAGMADSDRLESHTRFIRDDVRIIVATIAFGMGIDKPDVR 312
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
VIHY PK+LE+YYQESGR GRDG + C L+++ + ++ + +++ +
Sbjct: 313 FVIHYDLPKSLENYYQESGRAGRDGQPAQCLLFFSYGDMKTIEYLIEQKPDVDEQRIARQ 372
Query: 359 SLLAAQRYCLLTTCR 373
L Y T CR
Sbjct: 373 QLRQVIDYAESTECR 387
>gi|334121014|ref|ZP_08495090.1| ATP-dependent DNA helicase RecQ [Microcoleus vaginatus FGP-2]
gi|333455733|gb|EGK84376.1| ATP-dependent DNA helicase RecQ [Microcoleus vaginatus FGP-2]
Length = 731
Score = 327 bits (837), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 169/378 (44%), Positives = 237/378 (62%), Gaps = 14/378 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
LK +FGY FRP Q+++++ ++KRD ++VM TG GKSLC+QLP L+ +VVSPLI
Sbjct: 18 ALKHFFGYDSFRPGQQEIVEAALQKRDMMIVMPTGGGKSLCFQLPALLKPGLTVVVSPLI 77
Query: 64 SLMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
+LMQDQV +L+ GI A FL S +Q S +T G +LL++ PE+ ++ F
Sbjct: 78 ALMQDQVEALQDNGIGATFLNSTLSSQETRSRETAILEGKIKLLYVAPER--LLGERFLP 135
Query: 121 KL----LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
L K G+ FA+DEAHC+SEWGHDFR EY+Q+ ++R +P + LTATATE+VR
Sbjct: 136 FLDIVANKLGISAFAIDEAHCVSEWGHDFRPEYRQMQRVRDRYPDIPIMGLTATATERVR 195
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DII L L+NPY+ +ASF+R NL+Y V+ + SF + V +I+K G+G I+YC+
Sbjct: 196 QDIIQQLTLRNPYIHVASFNRPNLYYEVRPKTK-HSFAE--VLQIIKKKGGSG--IIYCL 250
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K V+E++ L+Q G++A YH M R FIRD+++VMVAT+AFGMGI+KPD
Sbjct: 251 SRKKVDEVAYKLQQSGIQALPYHAGMNDVDRATNQTRFIRDDVQVMVATIAFGMGINKPD 310
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY PK LE YYQESGR GRD + C L++ + D+ + ++
Sbjct: 311 VRFVIHYDLPKNLEGYYQESGRAGRDNEPAHCSLFFGYGDVKMIDYIIEQKPDPQEQRIA 370
Query: 357 MESLLAAQRYCLLTTCRR 374
+ L Y T CRR
Sbjct: 371 RQQLRRVINYAESTDCRR 388
>gi|443476000|ref|ZP_21065927.1| ATP-dependent DNA helicase RecQ [Pseudanabaena biceps PCC 7429]
gi|443019101|gb|ELS33248.1| ATP-dependent DNA helicase RecQ [Pseudanabaena biceps PCC 7429]
Length = 769
Score = 327 bits (837), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 178/385 (46%), Positives = 241/385 (62%), Gaps = 21/385 (5%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK+YFGY FR Q+++I + RD L +M TG GKS+C+QLP L+ +VVSPLI+
Sbjct: 38 LKQYFGYESFRAGQREIIDAHLAGRDTLAIMPTGGGKSICFQLPALLKTGVTIVVSPLIA 97
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV +LK+ GI A FL S + +++ G +L+++ PE+ +
Sbjct: 98 LMQDQVTALKENGIGATFLNSTLSGRETNQRSQAILNGAIKLIYVAPERLFAEQFIEFLN 157
Query: 122 LLKA--GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
++K G+ FA+DEAHC+SEWGHDFR EY+QL +LR F VP + LTATATE+VR DI
Sbjct: 158 IVKNKIGIAGFAIDEAHCVSEWGHDFRPEYRQLSRLRQFYPDVPVIGLTATATERVREDI 217
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRG--QSFVDELVQEILKSVAGAGSIIVYCMT 237
I L L+ PYV +ASF+R NL+Y V V +G QS+V+ L+Q+I K + G+G IVYC++
Sbjct: 218 IQQLDLQQPYVHVASFNRDNLYYEV-VPKQGTEQSYVN-LLQQI-KRMQGSG--IVYCLS 272
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K V EI++ L++ G+ A YH + +K REE +IRD+++VMVAT+AFGMGI+KPDV
Sbjct: 273 RKRVNEIAERLREDGIAAIPYHAGLSAKEREENQTRWIRDDVQVMVATIAFGMGINKPDV 332
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA--------KGDFYCGESQT 349
R VIHY PK +E YYQESGR GRDG S C L+ + K D + E
Sbjct: 333 RFVIHYDLPKNIEGYYQESGRAGRDGEDSHCTLFLGYQDLETIKYLIAQKVDPHTNEPLE 392
Query: 350 ENQRTAIMESLLAAQRYCLLTTCRR 374
QR A + L Y CRR
Sbjct: 393 AEQRIA-QQQLRQVVDYAEGLACRR 416
>gi|282896865|ref|ZP_06304871.1| ATP-dependent DNA helicase RecQ [Raphidiopsis brookii D9]
gi|281198274|gb|EFA73164.1| ATP-dependent DNA helicase RecQ [Raphidiopsis brookii D9]
Length = 719
Score = 326 bits (836), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 176/376 (46%), Positives = 240/376 (63%), Gaps = 12/376 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LKKYFGY FRP Q+ +I+ +E RD +VVM TG GKSLC+QLP L+ +VVSPLI+
Sbjct: 10 LKKYFGYDQFRPGQRQIIEDALENRDLMVVMPTGGGKSLCFQLPALLKPGLTVVVSPLIA 69
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKAC---IIPISF 118
LMQDQV +L+ I+A + S+ T V+++ E G +LL++ PE+ +PI
Sbjct: 70 LMQDQVEALRNNNISATLINSSLTTYQVRSREEAIMNGKVKLLYVAPERLVSERFLPILD 129
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
K K G+ F +DEAHC+SEWGHDFR EY+QL LR VP +ALTATAT++VR D
Sbjct: 130 VVKE-KFGLANFVIDEAHCVSEWGHDFRPEYRQLILLRKRFSHVPTIALTATATDRVRAD 188
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
II L LK P V IASF+R+NL+Y V+ NR S+ + L EI+K G+G I+YC+T
Sbjct: 189 IIQQLGLKQPAVHIASFNRQNLYYEVRPKNRN-SYGEIL--EIIKKNEGSG--IIYCLTR 243
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K+V+E++ L+ + A YH + + R + FIRD++R+MVAT+AFGMGI+KPDVR
Sbjct: 244 KNVDELTLKLQNSQIAALPYHAGLVDQERAKNQTRFIRDDVRIMVATIAFGMGINKPDVR 303
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
VIH P+ LESYYQESGR GRDG S C L+++ S+ ++ G+ ++ +
Sbjct: 304 FVIHCDLPRNLESYYQESGRAGRDGEPSRCTLFFSFSDVKTIEWSIGKKTDPQEQLIAKQ 363
Query: 359 SLLAAQRYCLLTTCRR 374
L Y T CRR
Sbjct: 364 QLRQVIDYAEGTDCRR 379
>gi|411116551|ref|ZP_11389038.1| ATP-dependent DNA helicase RecQ [Oscillatoriales cyanobacterium
JSC-12]
gi|410712654|gb|EKQ70155.1| ATP-dependent DNA helicase RecQ [Oscillatoriales cyanobacterium
JSC-12]
Length = 741
Score = 326 bits (836), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 173/384 (45%), Positives = 246/384 (64%), Gaps = 19/384 (4%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
S LK YFGY FRP Q+ +I++ ++ +D LVVM TG GKSLCYQLP L+ +VVSPL
Sbjct: 16 SALKHYFGYDSFRPGQRQIIEKALQNQDLLVVMPTGGGKSLCYQLPALLKPGLTVVVSPL 75
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACII-PISF 118
I+LMQDQV +L+ GI A FL S+ + + ++ + G +L+++ PE+ ++
Sbjct: 76 IALMQDQVQALQDNGIPATFLNSSLSGTELRERERAILDGEMKLVYIAPERLLNEGRLAG 135
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
W L + V A+DEAHC+SEWGHDFR EY+QL +LR + VP +ALTATATE+VR D
Sbjct: 136 W--LSQVYVAAIAIDEAHCVSEWGHDFRPEYRQLSQLRQWFANVPIMALTATATERVRYD 193
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
II L L++P + +++F+R NL+Y V+ ++ QS+ EL+Q +++ AGA II YC++
Sbjct: 194 IIEQLNLQDPVLHVSTFNRPNLYYEVRPKHK-QSY-RELLQ-LIRQQAGASGII-YCLSR 249
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K V+E++ L++ G+ A YH M ++ R E FIRD ++VMVAT+AFGMGI+KPDVR
Sbjct: 250 KRVDELTTKLQRDGISALPYHAGMDNQLRSENQSRFIRDNVQVMVATIAFGMGINKPDVR 309
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNF--------AKGDFYCGESQTE 350
V+HY P+ +E YYQESGR GRDG + C L+++ + K D GE +
Sbjct: 310 FVVHYDLPRNIEGYYQESGRAGRDGEPARCTLFFSMGDVKTVEFLISQKVDPNTGEPLED 369
Query: 351 NQRTAIMESLLAAQRYCLLTTCRR 374
QR A + L Y T CRR
Sbjct: 370 EQRIAT-QQLRRVINYAEATECRR 392
>gi|218245896|ref|YP_002371267.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. PCC 8801]
gi|218166374|gb|ACK65111.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. PCC 8801]
Length = 709
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 173/376 (46%), Positives = 238/376 (63%), Gaps = 10/376 (2%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
+LK +FGY FRP Q +IQ ++ RD LV+M TG GKSLC+QLP L+ +VVSPLI
Sbjct: 10 SLKYFFGYDSFRPGQAKIIQEALQNRDLLVIMPTGGGKSLCFQLPALLKPGLTVVVSPLI 69
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIPISFWS 120
+LMQDQV +L GI A FL S+ V+++ + G +LL++ PE+ + +
Sbjct: 70 ALMQDQVDTLLDNGIGATFLNSSLKSEEVRSREQAIIKGKIKLLYVAPERLLNDKFTPFL 129
Query: 121 KLL--KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
L K GV FA+DEAHC+SEWGHDFR EY+QL +LR VP +ALTATAT++VR D
Sbjct: 130 DFLAEKIGVSFFAIDEAHCVSEWGHDFRPEYRQLKQLRQRYPQVPMLALTATATKRVRED 189
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
II+ L LK P + I SF+R NL Y V+ R +S+ ++L+ I + GS IVYC++
Sbjct: 190 IIHQLALKQPGIHITSFNRPNLDYDVQFKER-RSY-NKLLSYIRQQ---KGSGIVYCLSR 244
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
+ V++I+ L+ G+KA YH M +AR FIRD+++VMVAT+AFGMGI+KPDVR
Sbjct: 245 RSVDDIAFRLQNDGIKALPYHAGMADEARALNQNRFIRDDVQVMVATIAFGMGINKPDVR 304
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
VIHY P+ LE YYQESGR GRDG + C L+++ S+ K ++ + T ++ +
Sbjct: 305 FVIHYDLPRNLEGYYQESGRAGRDGEPAECTLFFSLSDLKKIEYLIDQKSTPQEQKIARQ 364
Query: 359 SLLAAQRYCLLTTCRR 374
L Y T CRR
Sbjct: 365 QLRQVVDYAEGTECRR 380
>gi|257058944|ref|YP_003136832.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. PCC 8802]
gi|256589110|gb|ACU99996.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. PCC 8802]
Length = 709
Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 172/376 (45%), Positives = 239/376 (63%), Gaps = 10/376 (2%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
+LK +FGY FRP Q +IQ ++ RD LV+M TG GKSLC+QLP L+ +VVSPLI
Sbjct: 10 SLKYFFGYDSFRPGQAKIIQEALQNRDLLVIMPTGGGKSLCFQLPALLKPGLTVVVSPLI 69
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIPISFWS 120
+LMQDQV +L GI A FL S+ V+++ + G +LL++ PE+ + +
Sbjct: 70 ALMQDQVDTLLDNGIGATFLNSSLKSEEVRSREQAIIKGKIKLLYVAPERLLNDKFTPFL 129
Query: 121 KLL--KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ K GV FA+DEAHC+SEWGHDFR EY+QL +LR VP +ALTATAT++VR D
Sbjct: 130 DFIAEKIGVSFFAIDEAHCVSEWGHDFRPEYRQLKQLRQRYPQVPMLALTATATKRVRED 189
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
II+ L+LK P + I SF+R NL Y V+ R +S+ ++L+ I + GS IVYC++
Sbjct: 190 IIHQLELKQPGIHITSFNRPNLDYDVQFKER-RSY-NKLLSYIRQQ---KGSGIVYCLSR 244
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
+ V++I+ L+ G+KA YH M +AR FIRD+++VMVAT+AFGMGI+KPDVR
Sbjct: 245 RSVDDIAFRLQNDGIKALPYHAGMADEARALNQNRFIRDDVQVMVATIAFGMGINKPDVR 304
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
VIHY P+ LE YYQESGR GRDG + C L+++ S+ K ++ + T ++ +
Sbjct: 305 FVIHYDLPRNLEGYYQESGRAGRDGEPAECTLFFSLSDLKKIEYLIDQKSTPQEQKIARQ 364
Query: 359 SLLAAQRYCLLTTCRR 374
L Y T CRR
Sbjct: 365 QLRQVVDYAEGTECRR 380
>gi|218438410|ref|YP_002376739.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. PCC 7424]
gi|218171138|gb|ACK69871.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. PCC 7424]
Length = 709
Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 173/379 (45%), Positives = 241/379 (63%), Gaps = 14/379 (3%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ LK+YFGY FRP Q+++I+ +E RD LV+M TG GKSLC+QLP L+ +VVSPL
Sbjct: 10 TALKQYFGYDNFRPGQREIIEEALENRDLLVIMPTGGGKSLCFQLPALLKPGVTVVVSPL 69
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYF----QLLFMTPEKACIIPISF 118
ISLMQDQV +L GI A FL S+ S ++++ ET +LL++ PE+ +
Sbjct: 70 ISLMQDQVDALLDNGIGATFLNSSLDFSEIRSR-ETAILRNKIKLLYVAPERLLSEKFTP 128
Query: 119 WSKLL--KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
+ + + G+ FA+DEAHC+SEWGHDFR EY+QL +LR VP ALTATAT++V+
Sbjct: 129 FLDTIAQQVGISAFAIDEAHCVSEWGHDFRPEYRQLRQLRKRYPNVPMFALTATATKRVQ 188
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSV-AGAGSIIVYC 235
DII L LKNP + IASF+R NL+Y +K + +S+ ++LK + A GS IVYC
Sbjct: 189 QDIILQLDLKNPGIHIASFNRTNLYYDIKPKEK-RSY-----NQLLKYIRAHQGSGIVYC 242
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
M+ ++V+EI+ L+ G+ A YH + +AR FIRD++RVMVAT+AFGMGI+KP
Sbjct: 243 MSRRNVDEIAFRLQNDGISALPYHAGLTDEARTLNQTRFIRDDVRVMVATVAFGMGINKP 302
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTA 355
DVR V+H+ P+ LESYYQESGR GRDG + C L Y+ + K ++ + ++
Sbjct: 303 DVRFVVHFDLPRNLESYYQESGRAGRDGEPAKCLLLYSLGDLKKIEYIIEQKTNPQEQKI 362
Query: 356 IMESLLAAQRYCLLTTCRR 374
+ L Y T CRR
Sbjct: 363 ARQQLRQVIDYAEGTECRR 381
>gi|443309958|ref|ZP_21039633.1| ATP-dependent DNA helicase RecQ [Synechocystis sp. PCC 7509]
gi|442780011|gb|ELR90229.1| ATP-dependent DNA helicase RecQ [Synechocystis sp. PCC 7509]
Length = 724
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 174/383 (45%), Positives = 244/383 (63%), Gaps = 22/383 (5%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
STLKKYFGY+ FR Q+ +I++ + +D LVVM TG GKSLC+QLP L+ +VVSPL
Sbjct: 9 STLKKYFGYTSFRLGQQQIIEQALNNQDLLVVMPTGGGKSLCFQLPALLRKGLTVVVSPL 68
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFW 119
I+LMQDQV SL+ GI A FL S T V+++ E +G +LL++ PE+ +
Sbjct: 69 IALMQDQVQSLRNNGIGATFLNSTLTTYQVRSREEAILSGKVKLLYVAPERLLSDRFLPF 128
Query: 120 SKLLKA--GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
L++ G+ FA+DEAHC+SEWGHDFR +Y+QL LR VP +ALTATAT++VR
Sbjct: 129 IDLVQHQIGIASFAIDEAHCVSEWGHDFRPDYRQLRALRQRYPNVPTIALTATATDRVRS 188
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DII L L P + +ASF+R NL+Y V+ + Q++ ++L Q + K GAG I+YC++
Sbjct: 189 DIIQQLNLTKPIIHVASFNRPNLYYDVQPKQK-QAY-NQLKQLVTKH-EGAG--IIYCLS 243
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
+ V++I+ L+Q G+ A YH + RE FIRD+ R+MVAT+AFGMGI+KPDV
Sbjct: 244 RRKVDDITMKLQQDGISALPYHAGLSDAERESNQTRFIRDDARLMVATVAFGMGINKPDV 303
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHY P+ +ESYYQESGR GRDG A+ C +++ + ++ +Q+T +
Sbjct: 304 RFVIHYDLPRNIESYYQESGRAGRDGGAARCTIFFGYGDVKTVEYLI------DQKTDVQ 357
Query: 358 ESLLAAQR------YCLLTTCRR 374
E +A Q+ Y T CRR
Sbjct: 358 EQRIAKQQLRQIIDYAQGTVCRR 380
>gi|345306474|ref|XP_001508312.2| PREDICTED: Werner syndrome ATP-dependent helicase-like
[Ornithorhynchus anatinus]
Length = 1751
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 171/377 (45%), Positives = 237/377 (62%), Gaps = 6/377 (1%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRII-EKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+S LK YFG+S F+P Q VI ++ E+RD LVVMATG GKSLC+Q PP+ G +V+S
Sbjct: 756 ISCLKTYFGHSRFKPVQWKVIHSVLQERRDNLVVMATGYGKSLCFQFPPVYVGGLGIVIS 815
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ L+ I A FLGSAQ + ++ + G ++++F+TPE C + +
Sbjct: 816 PLISLMEDQVLQLEMSNIPACFLGSAQKKNDLEG-IKAGNYRVVFLTPE-FCSMNLHLLQ 873
Query: 121 KLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
++ G+ L AVDEAHC+SEWGHDFR ++ L L+T L VP +ALTATA+ +R DI
Sbjct: 874 EIDSIVGITLIAVDEAHCVSEWGHDFRNSFRTLGSLKTTLPLVPVIALTATASSSIRDDI 933
Query: 180 INSLKLKNPYVTIASFDRKNLFY--GVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
++ LKLKNP VT FDR NL+ G K N Q LV++ + G I+YC +
Sbjct: 934 MHCLKLKNPQVTCTGFDRPNLYLEVGRKTGNVLQDLKQFLVKKTGSVLEFEGPTIIYCPS 993
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K E+++ LK+L + GTYH MG R E H F+RDEI+ +VAT+AFGMGI+K D+
Sbjct: 994 RKITEQVAVELKKLNIVCGTYHAGMGINLRRETHHKFMRDEIQCIVATVAFGMGINKADI 1053
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHYG PK +ESYYQE GR GRDG+ S C +A + + E + + R +
Sbjct: 1054 RKVIHYGAPKEMESYYQEIGRAGRDGLPSSCHTLWAPGDMSLNRHLLNEIKNDTFRLYKL 1113
Query: 358 ESLLAAQRYCLLTTCRR 374
+ + ++Y + CRR
Sbjct: 1114 KMMAKIEKYLHSSMCRR 1130
>gi|186683728|ref|YP_001866924.1| ATP-dependent DNA helicase RecQ [Nostoc punctiforme PCC 73102]
gi|186466180|gb|ACC81981.1| ATP-dependent DNA helicase RecQ [Nostoc punctiforme PCC 73102]
Length = 719
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 173/381 (45%), Positives = 242/381 (63%), Gaps = 22/381 (5%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK +FGY FRP Q+ +I+ ++ RD L+VM TG GKSLC+QLP L+ +VVSPLI+
Sbjct: 11 LKYHFGYDRFRPGQRQIIEDALQNRDLLIVMPTGGGKSLCFQLPALIKKGLTVVVSPLIA 70
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV L+ INA FL S+ V+++ E +G +LL++ PE+ +
Sbjct: 71 LMQDQVEGLRNNNINATFLNSSLNPYKVRSREEAILSGKVRLLYVAPERLLSERFLPFLD 130
Query: 122 LLKA--GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
L+K G+ FA+DEAHC+SEWGHDFR EY+Q+ LR VP +ALTATAT++VR DI
Sbjct: 131 LVKEKIGIAAFAIDEAHCVSEWGHDFRPEYRQMKSLRKRYPDVPTLALTATATDRVRADI 190
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
I L LK P + IASF+R+NL+Y V+ ++ +S EL++ I ++ GS I+YC+T K
Sbjct: 191 IQQLGLKQPSIHIASFNRQNLYYEVR--SKTKSAYAELLELIREN---EGSAIIYCLTRK 245
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+E++ L+ + A +YH + + R FIRD++RVMVAT+AFGMGI+KPDVR
Sbjct: 246 KVDELTFKLQNDKISALSYHAGLSDEERSSNQTRFIRDDVRVMVATIAFGMGINKPDVRL 305
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIH+ P+ LESYYQESGR GRD S C L+++ S+ ++ +Q+T E
Sbjct: 306 VIHFDLPRNLESYYQESGRAGRDSEPSRCTLFFSFSDIKTIEWSI------DQKTDPQEQ 359
Query: 360 LLAAQR------YCLLTTCRR 374
L+A Q+ Y T CRR
Sbjct: 360 LIAKQQLRQVIDYAQGTVCRR 380
>gi|75908908|ref|YP_323204.1| ATP-dependent DNA helicase RecQ [Anabaena variabilis ATCC 29413]
gi|75702633|gb|ABA22309.1| ATP-dependent DNA helicase RecQ [Anabaena variabilis ATCC 29413]
Length = 718
Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 175/381 (45%), Positives = 244/381 (64%), Gaps = 22/381 (5%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK +FGY FRP Q+ +I+ ++ RD +VVM TG GKSLC+QLP L+ +VVSPLI+
Sbjct: 11 LKYHFGYDNFRPGQRQIIEDALQNRDLMVVMPTGGGKSLCFQLPALMKQGLTVVVSPLIA 70
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV +L+ I+A FL S+ V+++ E G +LL++ PE+ +
Sbjct: 71 LMQDQVEALRNNNISATFLNSSLNAYQVRSREEAILNGKVRLLYVAPERLLSERFLPFLD 130
Query: 122 LL--KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
L+ K G+ +FA+DEAHC+SEWGHDFR EY+QL LR VP +ALTATAT++VR DI
Sbjct: 131 LVNEKVGISIFAIDEAHCVSEWGHDFRPEYRQLKSLRKRYPNVPVLALTATATDRVRSDI 190
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
I L LK P + +ASF+R+NL+Y V+ ++ Q++ + L E+++ GS I+YC+T K
Sbjct: 191 IQQLGLKQPSIHLASFNRQNLYYEVRPKSK-QAYAELL--ELIRD--NEGSAIIYCLTRK 245
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
VEE++ L++ + A +YH + R + FIRD++RVMVAT+AFGMGI+KPDVR
Sbjct: 246 KVEELTFKLQKDKISALSYHAGLPDDERSKNQTRFIRDDVRVMVATIAFGMGINKPDVRL 305
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V+H+ P+ LESYYQESGR GRDG S C ++ F+ GD E E Q+T E
Sbjct: 306 VVHFDIPRNLESYYQESGRAGRDGEPSRCTIF-----FSFGDIKTIEWSIE-QKTDPQEQ 359
Query: 360 LLAAQR------YCLLTTCRR 374
L+A Q+ Y T CRR
Sbjct: 360 LIAKQQLRQMIDYAEGTDCRR 380
>gi|338720942|ref|XP_001915839.2| PREDICTED: LOW QUALITY PROTEIN: Werner syndrome ATP-dependent
helicase-like [Equus caballus]
Length = 1405
Score = 324 bits (831), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 171/374 (45%), Positives = 236/374 (63%), Gaps = 6/374 (1%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
LK YFG+S F+P Q VI ++E +RD +VVMATG GKSLC+Q PP+ G A+V+SPLI
Sbjct: 507 LKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYVGGIAIVISPLI 566
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKL- 122
SLM+DQV+ L+ I A FLGSAQ+ +V + G ++++++TPE C + +L
Sbjct: 567 SLMEDQVLQLEMSNIPACFLGSAQS-KNVLEDVKLGKYRIVYITPE-FCSRNLYLLHQLQ 624
Query: 123 LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINS 182
G+ L AVDEAHCISEWGHDFR ++ L L+T VP VALTATA+ +R DI+
Sbjct: 625 ANIGITLIAVDEAHCISEWGHDFRNSFRNLGSLKTAFPLVPVVALTATASSSIRDDIVRC 684
Query: 183 LKLKNPYVTIASFDRKNLFY--GVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L+LKNP +T FDR NL+ G K N Q LVQ+ + G I+YC++ K
Sbjct: 685 LELKNPRITCTGFDRPNLYLEVGQKTGNILQDLKQFLVQKTCSAWEFEGPTIIYCLSRKM 744
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
E+++ L++L + GTYH MGS +R+E H F+RDEI+ +VAT+AFGMGI+K D+R V
Sbjct: 745 TEQVTAELRKLQLACGTYHAGMGSNSRKEVHHRFMRDEIQCVVATIAFGMGINKADIRKV 804
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHYG PK +ESYYQE GR GRDG+ S C L + ++ + E R ++ +
Sbjct: 805 IHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWTPTDINLNRNRLSDIPDEKFRLYKLKMM 864
Query: 361 LAAQRYCLLTTCRR 374
++Y + CRR
Sbjct: 865 EKMEKYLRSSKCRR 878
>gi|427707114|ref|YP_007049491.1| ATP-dependent DNA helicase RecQ [Nostoc sp. PCC 7107]
gi|427359619|gb|AFY42341.1| ATP-dependent DNA helicase RecQ [Nostoc sp. PCC 7107]
Length = 718
Score = 324 bits (830), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 178/382 (46%), Positives = 239/382 (62%), Gaps = 24/382 (6%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK +FGY FRP Q+ +I+ ++ RD LVVM TG GKSLC+QLP LV +VVSPLI+
Sbjct: 11 LKYHFGYDQFRPGQRKIIEDALQNRDLLVVMPTGGGKSLCFQLPALVKKGLTVVVSPLIA 70
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV +L+ I+A FL S+ V+++ E G +LL++ PE+ +
Sbjct: 71 LMQDQVEALRNNNISATFLNSSLNPYQVRSREEAILNGKVRLLYVAPERLMSERFLPFLD 130
Query: 122 LL--KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
L+ + G+ FA+DEAHC+SEWGHDFR EY+QL LR+ VP +ALTATATE+VR DI
Sbjct: 131 LVHHQVGISTFAIDEAHCVSEWGHDFRPEYRQLRSLRSRYPHVPMIALTATATERVRSDI 190
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINR-GQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I + LK P + IASF+R+NL+Y V+ + + + EL++EI GS I+YC+T
Sbjct: 191 IQQIGLKQPSIHIASFNRQNLYYEVRPKTKYAYAELLELIREI------DGSAIIYCLTR 244
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K V+E++ L+ V YH + + R + FIRD+ RVMVAT+AFGMGI+KPDVR
Sbjct: 245 KKVDELTFKLQNDKVSVLAYHAGLSDEERSKNQTRFIRDDARVMVATIAFGMGINKPDVR 304
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
VIH+ P+ LESYYQESGR GRDG S C ++ F+ GD E NQ+T E
Sbjct: 305 LVIHFDIPRNLESYYQESGRAGRDGEPSRCTIF-----FSFGDIKTIEWSI-NQKTDAQE 358
Query: 359 SLLAAQR------YCLLTTCRR 374
L+A Q+ Y T CRR
Sbjct: 359 QLIAKQQLRQMIDYAEGTDCRR 380
>gi|427727826|ref|YP_007074063.1| ATP-dependent DNA helicase RecQ [Nostoc sp. PCC 7524]
gi|427363745|gb|AFY46466.1| ATP-dependent DNA helicase RecQ [Nostoc sp. PCC 7524]
Length = 718
Score = 323 bits (829), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 174/381 (45%), Positives = 241/381 (63%), Gaps = 22/381 (5%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK +FGY FRP Q+ +I+ ++ RD LVVM TG GKSLC+QLP L+ +VVSPLI+
Sbjct: 11 LKYHFGYDQFRPGQRQIIEDALQNRDLLVVMPTGGGKSLCFQLPALMKSGLTVVVSPLIA 70
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV +L+ I+A FL S+ V+++ + G +LL++ PE+ +
Sbjct: 71 LMQDQVEALRNNNISATFLNSSLNPYQVRSREDAILNGKVRLLYVAPERLLSERFLPFLD 130
Query: 122 LL--KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
L+ K G+ +FA+DEAHC+SEWGHDFR EY+QL LR VP +ALTATAT++VR DI
Sbjct: 131 LVHEKIGISIFAIDEAHCVSEWGHDFRPEYRQLKSLRKRYPNVPMLALTATATDRVRADI 190
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
I L LK P + IASF+R+NL+Y V+ ++ Q++ + L E+++ G S+I+YC+T K
Sbjct: 191 IQQLGLKQPSIHIASFNRQNLYYEVRAKSK-QAYAELL--ELIRDTEG--SVIIYCLTRK 245
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
VEE++ L+ + YH + R + FIRD++RVMVAT+AFGMGI+KPDVR
Sbjct: 246 KVEELTFKLQNDKIAVLPYHAGLPDAERSQNQTRFIRDDVRVMVATIAFGMGINKPDVRL 305
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V+H+ P+ LESYYQESGR GRDG S C ++ F+ D E E Q+T E
Sbjct: 306 VVHFDIPRNLESYYQESGRAGRDGEPSRCTIF-----FSFADIKTIEWSIE-QKTEPQEQ 359
Query: 360 LLAAQR------YCLLTTCRR 374
L+A Q+ Y T CRR
Sbjct: 360 LIARQQLRQMIDYAEGTDCRR 380
>gi|91772141|ref|YP_564833.1| ATP-dependent DNA helicase RecQ [Methanococcoides burtonii DSM
6242]
gi|91711156|gb|ABE51083.1| ATP dependent DNA helicase RecQ [Methanococcoides burtonii DSM
6242]
Length = 647
Score = 323 bits (829), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 173/377 (45%), Positives = 236/377 (62%), Gaps = 10/377 (2%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M TL+KYFGYS FRP Q+D+I ++ K+D V+M TG GKS+CYQ+P L+ A+VVS
Sbjct: 1 MHRTLQKYFGYSEFRPLQEDIINDVLNKKDVFVLMPTGGGKSICYQIPALIMDGLAVVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQ--TKA-ETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV L GI+A +L S + + VQ T+A G +L++ PE+ C+ S
Sbjct: 61 PLISLMKDQVDGLVSNGISAAYLNSTLSYNEVQKITRAIVEGNVDILYVAPERLCMK--S 118
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
L V LFA+DEAHCISEWGHDFR EY+++ L+ VP +ALTATAT KV+
Sbjct: 119 TQELLSHVNVSLFAIDEAHCISEWGHDFRPEYRRMGFLKKKYPDVPVIALTATATAKVKE 178
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
+ I L L +P V +ASFDR NL Y ++ N ++ D + LK G S I+YC +
Sbjct: 179 NTIKQLDLVSPSVYVASFDRANLSYEIRPKN--NTYGDMV--SYLKGQRG-NSGIIYCNS 233
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K VE +S L + G A YH + R++ FIRD++ ++VAT+AFGMGIDKP+V
Sbjct: 234 RKSVESVSTKLNREGFHALPYHAGLNDAKRQDNQERFIRDDVDIIVATVAFGMGIDKPNV 293
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHY PK LE YYQE+GR GRDG+ C LY++R+++ K + + +++R M
Sbjct: 294 RFVIHYDLPKNLEGYYQETGRGGRDGLECDCILYFSRADWYKIKYLIDQKPKKSERDIAM 353
Query: 358 ESLLAAQRYCLLTTCRR 374
L YC T+CRR
Sbjct: 354 TKLQEMIDYCESTSCRR 370
>gi|432099984|gb|ELK28878.1| Werner syndrome ATP-dependent helicase [Myotis davidii]
Length = 1398
Score = 323 bits (829), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 170/374 (45%), Positives = 233/374 (62%), Gaps = 6/374 (1%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
LK YFG+S F+P Q VI ++E +RD +VVMATG GKSLC+Q PP+ G LV+SPLI
Sbjct: 497 LKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYVGGIGLVISPLI 556
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKL- 122
SLM+DQV+ L+ I+A FLGSAQ+ +V + G ++++++TPE C + +L
Sbjct: 557 SLMEDQVLQLRMSNISACFLGSAQS-QNVLKDVKLGKYRIVYLTPE-FCSGNLYLLQQLQ 614
Query: 123 LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINS 182
G+ L AVDEAHCISEWGHDFR +++L L+ VP VALTATA+ +R DI+
Sbjct: 615 ADIGITLIAVDEAHCISEWGHDFRNSFRELGSLKAAFPSVPIVALTATASSSIREDIVRC 674
Query: 183 LKLKNPYVTIASFDRKNLFY--GVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L LKNP +T FDR NL+ G K N Q LVQ+ + G I+YC + K
Sbjct: 675 LNLKNPQITCTGFDRPNLYLEVGQKTGNILQDLKQFLVQKTSSAWEFEGPTIIYCPSRKM 734
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
E+++ L++L + GTYH M + +R+E H F+RDEI+ +VAT+AFGMGI+K DVR V
Sbjct: 735 TEQVTVELRKLNLACGTYHAGMDNSSRKEVHHKFMRDEIQCVVATIAFGMGINKADVRKV 794
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHYG PK +ESYYQE GR GRDG+ S C L + ++ E E R ++ +
Sbjct: 795 IHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWTPADICLNRHRLNEIHNEKFRLYKLKMM 854
Query: 361 LAAQRYCLLTTCRR 374
++Y + CRR
Sbjct: 855 AKMEKYLHSSRCRR 868
>gi|198432737|ref|XP_002131753.1| PREDICTED: similar to FFA-1 protein [Ciona intestinalis]
Length = 1194
Score = 323 bits (828), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 171/382 (44%), Positives = 232/382 (60%), Gaps = 17/382 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRII-EKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
LK+YFG+S FRP Q +I + + RD VVMATG GKSLCYQ PP+ TA+ +SPLI
Sbjct: 249 LKEYFGHSKFRPMQWKIINTALNDGRDQCVVMATGYGKSLCYQYPPVYLDSTAICISPLI 308
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET------GYFQLLFMTPEKACIIPIS 117
SLM+DQV+ L I A FLGSAQ + K ET G F+++++TPE A
Sbjct: 309 SLMEDQVLKLHTSNIPAAFLGSAQ-----KNKQETYRDMMGGKFRVVYITPEYAESCSDV 363
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
G+ L A+DEAHC+S+WGHDFR Y+ L +L+T L VP +ALTATAT +VR
Sbjct: 364 LEELNRNVGISLIAIDEAHCVSQWGHDFRAAYRNLGRLKTILPKVPIIALTATATPEVRK 423
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGV--KVINRGQSFVDELVQEILKS---VAGAGSII 232
DI NSL LKN +T SFDR NL+ V K + + Q+ +++ + G I
Sbjct: 424 DICNSLHLKNALITCTSFDRVNLYLDVYKKSGDPAADLRGLMKQKTVRNKTVYSFEGPTI 483
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
+YC T KD ++ +A+K LGV+ YH + + R EAH F+RDE+ +VAT+AFGMGI
Sbjct: 484 IYCPTKKDTAKLGQAVKSLGVRCLIYHAGISMERRSEAHHKFVRDEVECIVATVAFGMGI 543
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ 352
DKPDVR +IHYG PK +ESYYQE GR GRDG+ + C ++ +F F+ + +
Sbjct: 544 DKPDVRKIIHYGAPKDIESYYQEIGRAGRDGLPATCHTFFTSGDFNTNRFFLRDISSAKF 603
Query: 353 RTAIMESLLAAQRYCLLTTCRR 374
+ +L ++Y T+CRR
Sbjct: 604 KDHKAGMILKMEQYLTTTSCRR 625
>gi|351715433|gb|EHB18352.1| Werner syndrome ATP-dependent helicase [Heterocephalus glaber]
Length = 1411
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 170/374 (45%), Positives = 235/374 (62%), Gaps = 6/374 (1%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
LK YFG+ F+P Q VI ++E +RD +VVMATG GKSLC+Q PP+ GK LV+SPLI
Sbjct: 520 LKTYFGHHSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYVGKIGLVISPLI 579
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKL- 122
SLM+DQV+ L+ I A FLGSAQ+ +V + G ++++++TPE C + L
Sbjct: 580 SLMEDQVLQLEMSNIPACFLGSAQS-KNVLEDVKLGKYRIIYITPE-FCSGNLDLLQHLE 637
Query: 123 LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINS 182
G+ L AVDEAHCISEWGHDFR ++ L L+T L VP VALTATA+ ++ DII+
Sbjct: 638 ANIGITLIAVDEAHCISEWGHDFRSSFRTLGSLKTALPLVPIVALTATASSSIQEDIIHC 697
Query: 183 LKLKNPYVTIASFDRKNLFY--GVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
LKL NP +T SFDR NL+ G K N Q LV++ G I+YC + K
Sbjct: 698 LKLSNPQITCTSFDRPNLYLEVGRKTGNILQDLQPFLVKKTSSEWEFEGPTIIYCSSRKM 757
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
E+++ L++L + GTYH M R++ H F+RDEI+ ++AT+AFGMGI+K D+R V
Sbjct: 758 TEKVTAELRKLNLACGTYHAGMSFNTRKDVHHRFMRDEIQCVIATIAFGMGINKSDIRKV 817
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHYG PK +ESYYQE GR GRDG+ S C + +A ++F + E E R+ ++ +
Sbjct: 818 IHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPADFNLNRHHFIEIHNEKFRSYKLKMV 877
Query: 361 LAAQRYCLLTTCRR 374
++Y + CRR
Sbjct: 878 AKMEKYLHSSRCRR 891
>gi|431902275|gb|ELK08776.1| Werner syndrome ATP-dependent helicase [Pteropus alecto]
Length = 1338
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 169/374 (45%), Positives = 237/374 (63%), Gaps = 6/374 (1%)
Query: 5 LKKYFGYSVFRPYQKDVIQRII-EKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
LK YFG+S F+P Q VI ++ E+RD +VVMATG GKSLC+Q PP+ G+ LV+SPLI
Sbjct: 412 LKTYFGHSNFKPVQWKVIYSVLKERRDNVVVMATGYGKSLCFQYPPVYMGRIGLVISPLI 471
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKL- 122
SLM+DQV+ L+ I+A FLGSAQ+ ++ ++G +Q++++TPE C+ + +L
Sbjct: 472 SLMEDQVLHLRMSNISACFLGSAQS-KNILKDIKSGKYQIVYLTPE-FCLGNFNLLQELE 529
Query: 123 LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINS 182
G+ L AVDEAHCISEWGHDFR ++ L L+ VP VALTATA+ VR DI+
Sbjct: 530 ANIGIALIAVDEAHCISEWGHDFRNSFRALGSLKAAFPLVPIVALTATASSSVREDIVRC 589
Query: 183 LKLKNPYVTIASFDRKNLFY--GVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L LK+P +T FDR NL+ G K N Q+ LV++ + G I+YC + K
Sbjct: 590 LNLKDPQITCTGFDRPNLYLEVGRKTGNILQNLKQFLVRKTSSAWEFEGPTIIYCPSRKM 649
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
E ++ L++L + GTYH M +R+ H F+RDEI+ +VAT+AFGMGI+K D+R V
Sbjct: 650 TERVTDELRKLKLTCGTYHAGMTINSRKAVHHRFMRDEIQCVVATIAFGMGINKADIRKV 709
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHYG PK +ESYYQE GR GRDG+ S C + +A ++ + E Q E R ++ L
Sbjct: 710 IHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRYRLSEIQNEKFRLYKLKML 769
Query: 361 LAAQRYCLLTTCRR 374
++Y ++CRR
Sbjct: 770 AKMEKYLHSSSCRR 783
>gi|348578015|ref|XP_003474779.1| PREDICTED: Werner syndrome ATP-dependent helicase-like [Cavia
porcellus]
Length = 1486
Score = 322 bits (826), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 171/377 (45%), Positives = 236/377 (62%), Gaps = 6/377 (1%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
V+ LK YFG+ F+P Q VI ++E +RD +VVMATG GKSLC+Q PP+ GK +VVS
Sbjct: 512 VTCLKTYFGHHNFKPVQWKVIYSVLEERRDNVVVMATGYGKSLCFQYPPVYLGKIGIVVS 571
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ L+ I A FLGSAQ+++ V A+ G ++++++TPE C +
Sbjct: 572 PLISLMEDQVLQLEMSNIPACFLGSAQSNN-VLEDAKLGKYRIIYITPE-FCSGNLDLLR 629
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L G+ L AVDEAHCISEWGHDFR ++ L L+T L VP VALTATA+ ++ DI
Sbjct: 630 QLQANIGIALIAVDEAHCISEWGHDFRSSFRTLGSLKTALPLVPIVALTATASSSIQEDI 689
Query: 180 INSLKLKNPYVTIASFDRKNLFY--GVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
I LKL NP +T SFDR NL+ G K N Q LV+ G I+YC +
Sbjct: 690 IRCLKLNNPQITCTSFDRPNLYLEVGRKTGNILQDLQPFLVKRTNSEWEFEGPTIIYCPS 749
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K E+++ L++L + TYH M S R++ H F+RDEI+ ++AT+AFGMGI+KPD+
Sbjct: 750 RKMTEQVTAELRKLNLACETYHAGMSSGTRKDVHHRFMRDEIQCIIATIAFGMGINKPDI 809
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R +IHYG PK +ESYYQE GR GRDG+ S C + +A ++ + E E R +
Sbjct: 810 RKIIHYGAPKEMESYYQEVGRAGRDGLPSSCHVLWAPADINLNRYRFFEIHNEKFRLYKL 869
Query: 358 ESLLAAQRYCLLTTCRR 374
+ + ++Y CRR
Sbjct: 870 KMVAKMEKYLHSNRCRR 886
>gi|409992245|ref|ZP_11275447.1| ATP-dependent DNA helicase RecQ [Arthrospira platensis str. Paraca]
gi|409936909|gb|EKN78371.1| ATP-dependent DNA helicase RecQ [Arthrospira platensis str. Paraca]
Length = 739
Score = 322 bits (826), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 167/376 (44%), Positives = 240/376 (63%), Gaps = 13/376 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK+YFGY FRP Q+++I+++++KRD L +M TG GKSLC+QLP L+ +VVSPLI+
Sbjct: 18 LKQYFGYDSFRPGQREIIEQVLQKRDVLAIMPTGGGKSLCFQLPALLKPGLTVVVSPLIA 77
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE----TGYFQLLFMTPEKACIIP--ISF 118
LMQDQV +LK GI A FL S D + + E G +LL++ PE+ + P + F
Sbjct: 78 LMQDQVEALKNNGIEATFLNST-VDLNQARQREFAILQGKIKLLYVAPER-LLSPQFLGF 135
Query: 119 WSKL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
++ + G+ +DEAHC+S+WGHDFR EY+Q+ ++R+ VP +ALTATATE+VR
Sbjct: 136 LDRIDAELGISTLVIDEAHCVSDWGHDFRPEYRQIQQVRSRYPHVPAIALTATATERVRF 195
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DII + LK PYV +ASF R NL+Y V + F L + ++S++G+G I+YC +
Sbjct: 196 DIIRQIVLKQPYVHVASFYRSNLYYQVIPKQPKKRFTQLL--KAIESMSGSG--IIYCSS 251
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K VEE++ L+ + A YH M R E+H FIRD++R++VAT+AFGMGIDKPDV
Sbjct: 252 RKRVEEVALQLQHNNIPALPYHAGMADSDRLESHTRFIRDDVRIIVATIAFGMGIDKPDV 311
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHY PK+LE+YYQESGR GRDG + C L+++ + ++ + +++
Sbjct: 312 RFVIHYDLPKSLENYYQESGRAGRDGQPAQCLLFFSYGDMKTIEYLIEQKPDVDEQRIAR 371
Query: 358 ESLLAAQRYCLLTTCR 373
+ L Y T CR
Sbjct: 372 QQLRQVIDYAESTECR 387
>gi|434393955|ref|YP_007128902.1| ATP-dependent DNA helicase RecQ [Gloeocapsa sp. PCC 7428]
gi|428265796|gb|AFZ31742.1| ATP-dependent DNA helicase RecQ [Gloeocapsa sp. PCC 7428]
Length = 602
Score = 322 bits (826), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 172/377 (45%), Positives = 236/377 (62%), Gaps = 10/377 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
S LK YFGY FRP Q+ ++++ ++ RD LVVM TG GKSLC+QLP L+ +VVSPL
Sbjct: 9 SALKHYFGYDSFRPGQRCIVEQALQNRDLLVVMPTGGGKSLCFQLPALLKKGLTVVVSPL 68
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFW 119
I+LMQDQV +L+ GI A F+ S+ + V+T+ + +G +LL++ PE+ +
Sbjct: 69 IALMQDQVEALQDNGIGATFINSSLSAYHVRTREQAILSGKVKLLYIAPERLLSEKFLPF 128
Query: 120 SKLL--KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
L+ + G+ FA+DEAHC+SEWGHDFR EY+QL +LR GVP +ALTATATE+VR
Sbjct: 129 LDLVHHQMGISAFAIDEAHCVSEWGHDFRPEYRQLQQLRHRFSGVPTIALTATATERVRQ 188
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DII L L P V IASF+R+NLFY V+ + QS+ L +S AG I+YC++
Sbjct: 189 DIIQQLGLVEPSVHIASFNRQNLFYEVQPKQK-QSYQQLLQLIRQQSGAG----IIYCLS 243
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
+ V+EI+ LK G+ A YH + + R FIRD+++VMVAT+AFGMGI+KPDV
Sbjct: 244 RRRVDEIAFKLKNDGIAALPYHAGLSDRDRTANQTSFIRDDVQVMVATIAFGMGINKPDV 303
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHY P+ LESYYQESGR GRDG + C L+ + ++ + ++
Sbjct: 304 RFVIHYDLPRNLESYYQESGRAGRDGEPARCTLFLNYGDIKTIEYLIAQKPDPQEQRIAK 363
Query: 358 ESLLAAQRYCLLTTCRR 374
+ L Y T CRR
Sbjct: 364 QQLRQVIDYAEGTDCRR 380
>gi|291569161|dbj|BAI91433.1| ATP-dependent DNA helicase [Arthrospira platensis NIES-39]
Length = 739
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 167/376 (44%), Positives = 240/376 (63%), Gaps = 13/376 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK+YFGY FRP Q+++I+++++KRD L +M TG GKSLC+QLP L+ +VVSPLI+
Sbjct: 18 LKQYFGYDSFRPGQREIIEQVLQKRDVLAIMPTGGGKSLCFQLPALLKPGLTVVVSPLIA 77
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE----TGYFQLLFMTPEKACIIP--ISF 118
LMQDQV +LK GI A FL S D + + E G +LL++ PE+ + P + F
Sbjct: 78 LMQDQVEALKNNGIEATFLNST-VDLNQARQREFAILQGKIKLLYVAPER-LLSPQFLGF 135
Query: 119 WSKL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
++ + G+ +DEAHC+S+WGHDFR EY+Q+ ++R+ VP +ALTATATE+VR
Sbjct: 136 LDRIDAELGISTLVIDEAHCVSDWGHDFRPEYRQIQQVRSRYPHVPAIALTATATERVRF 195
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DII + LK PYV +ASF R NL+Y V + F L + ++S++G+G I+YC +
Sbjct: 196 DIIRQIVLKQPYVHVASFYRSNLYYQVIPKQPKKRFTQLL--KAIESMSGSG--IIYCSS 251
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K VEE++ L+ + A YH M R E+H FIRD++R++VAT+AFGMGIDKPDV
Sbjct: 252 RKRVEEVALQLQHNNIPALPYHAGMADSDRLESHTRFIRDDVRIIVATIAFGMGIDKPDV 311
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHY PK+LE+YYQESGR GRDG + C L+++ + ++ + +++
Sbjct: 312 RFVIHYDLPKSLENYYQESGRAGRDGQPAQCLLFFSYGDMKTIEYLIEQKPDVDEQRIAR 371
Query: 358 ESLLAAQRYCLLTTCR 373
+ L Y T CR
Sbjct: 372 QQLRQVIDYAESTECR 387
>gi|443322394|ref|ZP_21051417.1| ATP-dependent DNA helicase RecQ [Gloeocapsa sp. PCC 73106]
gi|442787869|gb|ELR97579.1| ATP-dependent DNA helicase RecQ [Gloeocapsa sp. PCC 73106]
Length = 701
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 170/377 (45%), Positives = 236/377 (62%), Gaps = 10/377 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
S LK++FG+ VFRP Q+ +I ++ RD LV+M TG GKSLCYQLP L+ LVVSPL
Sbjct: 6 SALKRFFGHDVFRPLQEQIIAEVLNNRDLLVIMPTGGGKSLCYQLPALLKPGLTLVVSPL 65
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPIS-F 118
ISLMQDQV +LK RGI A FL S+ +Q+++ G +LL++ PE+ S F
Sbjct: 66 ISLMQDQVNALKDRGIGATFLNSSLNSQEIQSRSREILQGNIKLLYVAPERLLSEGFSVF 125
Query: 119 WSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
+++ + G+ A+DEAHC+SEWG DFR EY+Q+ LR VP VALTATAT +VR
Sbjct: 126 LTQIQQDVGISALAIDEAHCVSEWGQDFRPEYRQIKGLRQRYPQVPMVALTATATTRVRQ 185
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DII L L P V + SF+R NL+Y +V+++ + +L++ I K G+G IVYC++
Sbjct: 186 DIIQQLGLIKPGVYVDSFNRPNLYY--EVVSKDKRDYPQLLKYI-KLQQGSG--IVYCLS 240
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
+ VEE++ L+ G+ + YHG M R FI D++RVMVAT+AFGMGI+KPDV
Sbjct: 241 RRRVEEVASRLQADGISSLPYHGGMDDTVRSVYQNRFIGDDVRVMVATIAFGMGINKPDV 300
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R V HY P+ LESYYQE GR GRDG ++C L+++R + D+ + + +
Sbjct: 301 RFVFHYDLPRNLESYYQEVGRAGRDGERAICVLFFSRGDIRTIDYLIKQKSDPSAQRLAR 360
Query: 358 ESLLAAQRYCLLTTCRR 374
+ L + Y T CRR
Sbjct: 361 QGLSSMVDYAESTVCRR 377
>gi|427712781|ref|YP_007061405.1| ATP-dependent DNA helicase RecQ [Synechococcus sp. PCC 6312]
gi|427376910|gb|AFY60862.1| ATP-dependent DNA helicase RecQ [Synechococcus sp. PCC 6312]
Length = 732
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 166/388 (42%), Positives = 239/388 (61%), Gaps = 21/388 (5%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ LK YFGY FRP Q ++I + ++D L ++ TG GKS+C+QLP L+ LVVSP
Sbjct: 4 LEALKHYFGYEAFRPGQAEIINASLNQQDVLAILPTGGGKSICFQLPALLKPGVTLVVSP 63
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIPISF 118
LI+LM DQV++L++ GI A FL S + + + + G +LL++ PE+ ++ SF
Sbjct: 64 LIALMLDQVLALQKNGIPATFLNSTLAAAEARARIHSILNGEVKLLYVAPER--LVSDSF 121
Query: 119 WSKLLK----AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEK 174
+ L G+ F VDEAHC+SEWGHDFR +Y+QL +LR +P +ALTATAT
Sbjct: 122 TALLANIHQTVGIASFVVDEAHCVSEWGHDFRPDYRQLSRLRELFPSIPMMALTATATHC 181
Query: 175 VRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVY 234
VR DI L LK P++ +ASF+R NL+Y V +RG+ + EL + I K+ GS I+Y
Sbjct: 182 VRADITEQLSLKQPFIHVASFNRPNLYYEVIEKSRGKVSLSELTRYIKKT---EGSGIIY 238
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
CM+ K+VE+++ L + G+ A YH + + R + FIRD++++MVAT+AFGMGI+K
Sbjct: 239 CMSRKNVEKLASELNENGISALPYHAGLNNDTRTDHQTRFIRDDVQIMVATVAFGMGINK 298
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFY--------CGE 346
PDVR VIHY P+T+E YYQESGR GRDG + C L+++ + + D++ E
Sbjct: 299 PDVRFVIHYDLPQTIEGYYQESGRGGRDGEPARCTLFFSPGDIKQADWFIQNKVHPETNE 358
Query: 347 SQTENQRTAIMESLLAAQRYCLLTTCRR 374
+ QR A + L Y T CRR
Sbjct: 359 PLEDEQRIA-RQQLRQIAAYADSTLCRR 385
>gi|434389644|ref|YP_007100255.1| ATP-dependent DNA helicase RecQ [Chamaesiphon minutus PCC 6605]
gi|428020634|gb|AFY96728.1| ATP-dependent DNA helicase RecQ [Chamaesiphon minutus PCC 6605]
Length = 743
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 172/386 (44%), Positives = 237/386 (61%), Gaps = 25/386 (6%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK YFGY FR Q+++I + RD LVVM TG GKSLC+QLP L+ +VVSPLI+
Sbjct: 15 LKHYFGYDEFRSGQREIITTALANRDLLVVMPTGGGKSLCFQLPALLKNGVTIVVSPLIA 74
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKA---ETGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV L GI A FL S+ T + + G +LL++ PE+ + F S
Sbjct: 75 LMQDQVQLLANNGIPATFLNSSITTEEKRDRVAAIHNGEIKLLYVAPER---LNQEFISN 131
Query: 122 LL-----KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
L + G+ FA+DEAHC+SEWGHDFR +Y++L +LR + VP++ LTATAT++VR
Sbjct: 132 FLVDLHQEVGIAGFAIDEAHCVSEWGHDFRPDYRKLAQLRHYFPKVPWLGLTATATDRVR 191
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DIIN L+L+ P+V IASF+R NL+Y V+ + + EL+ ++ +S GS I+YC+
Sbjct: 192 SDIINQLELREPHVHIASFNRPNLYYEVR--RKTTAPYKELLAQVKQS---EGSGIIYCL 246
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K V+E++ LKQ G+K YH + + R + FIRD+++V+VAT+AFGMGI+KPD
Sbjct: 247 SRKKVDELTTKLKQDGIKVVPYHAGLDGETRTKNQNSFIRDDVKVIVATVAFGMGINKPD 306
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA--------KGDFYCGESQ 348
VR VIHY P+ +E YYQESGR GRDG + C LY+ + K D G +
Sbjct: 307 VRFVIHYDLPRNIEGYYQESGRAGRDGEPAHCTLYFGMGDIKTIEYLIAQKVDPETGMAL 366
Query: 349 TENQRTAIMESLLAAQRYCLLTTCRR 374
+ QR A + L Y T CRR
Sbjct: 367 EDEQRIA-TQQLRRVINYAEATECRR 391
>gi|282898834|ref|ZP_06306821.1| ATP-dependent DNA helicase RecQ [Cylindrospermopsis raciborskii
CS-505]
gi|281196361|gb|EFA71271.1| ATP-dependent DNA helicase RecQ [Cylindrospermopsis raciborskii
CS-505]
Length = 719
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 174/376 (46%), Positives = 237/376 (63%), Gaps = 12/376 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
KKYFGY FRP Q+ +I+ +E RD +VVM TG GKSLC+QLP L+ +VVSPLI+
Sbjct: 10 FKKYFGYDQFRPGQRQIIEDALENRDLMVVMPTGGGKSLCFQLPALLKPGLTVVVSPLIA 69
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKAC---IIPISF 118
LMQDQV +L+ I+A + S+ T V+++ E G +LL++ PE+ +PI
Sbjct: 70 LMQDQVEALRNNNISATLINSSLTTYQVRSREEAIMNGKVKLLYVAPERLVSERFLPILD 129
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
K K G+ F +DEAHC+SEWGHDFR EY+QL LR VP +ALTATAT++VR D
Sbjct: 130 VVKE-KFGLANFVIDEAHCVSEWGHDFRPEYRQLILLRKRFSHVPTIALTATATDRVRAD 188
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
II L LK P V IASF+R+NL+Y V+ NR S+ + L EI+K G+G I+YC+T
Sbjct: 189 IIQQLGLKQPAVHIASFNRQNLYYEVRPKNRN-SYGEIL--EIIKENEGSG--IIYCLTR 243
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K+V+E++ L+ + A YH + R + FIRD++R+MVAT+AFGMGI+KPDVR
Sbjct: 244 KNVDELTLKLQNSQIAALPYHAGLVDYERAKNQTRFIRDDVRIMVATIAFGMGINKPDVR 303
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
VIH P+ LESYYQESGR GRDG S C L+++ + ++ G+ ++ +
Sbjct: 304 FVIHCDLPRNLESYYQESGRAGRDGEPSRCTLFFSFGDVKTIEWSIGKKTDPQEQLIAKQ 363
Query: 359 SLLAAQRYCLLTTCRR 374
L Y T CRR
Sbjct: 364 QLRQVIDYAEGTDCRR 379
>gi|113476788|ref|YP_722849.1| ATP-dependent DNA helicase RecQ [Trichodesmium erythraeum IMS101]
gi|110167836|gb|ABG52376.1| ATP-dependent DNA helicase RecQ [Trichodesmium erythraeum IMS101]
Length = 731
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 168/374 (44%), Positives = 233/374 (62%), Gaps = 8/374 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK YFGY FRP QK +IQ ++++D L++M TG GKSLC+Q+P L+ +VVSPLIS
Sbjct: 18 LKNYFGYDSFRPGQKQIIQTALQQKDLLIIMPTGGGKSLCFQMPALLKPGLTIVVSPLIS 77
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIPISFWSK 121
LMQDQV SLK GI A FL S + + ++ G +LL++ PE+ + +
Sbjct: 78 LMQDQVESLKDNGIAATFLNSTLDLTETRRRSTDIILGKIKLLYVAPERLLSEKFLEFLE 137
Query: 122 LLKA--GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
L+ + G+ FA+DEAHC+SEWGHDFR EY+QL LR VP +ALTATAT++VR DI
Sbjct: 138 LISSQQGISTFAIDEAHCVSEWGHDFRPEYRQLKLLRETYPDVPIMALTATATKRVREDI 197
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
L L+ PY+ IASF R NL+Y V+ ++ E++Q I++++ G+G IVYC + K
Sbjct: 198 TTQLNLQKPYIHIASFFRSNLYYEVRQKTSAKNTFAEILQ-IIRTIGGSG--IVYCNSRK 254
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+EI+ L+Q V A YH M + R FIRD++ V+VAT+AFGMGIDKPDVR
Sbjct: 255 RVDEIAYKLRQNNVSALAYHAGMTDEERTTNQTKFIRDDVDVIVATVAFGMGIDKPDVRF 314
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIHY K +E YYQE+GR GRDG + C L+++ + ++ G+ E ++ +
Sbjct: 315 VIHYDLSKNIEGYYQETGRSGRDGEPAQCILFFSYGDKRSIEYLIGQKVDEQEQRIAEQQ 374
Query: 360 LLAAQRYCLLTTCR 373
L Y T CR
Sbjct: 375 LRRIINYAEATECR 388
>gi|345781559|ref|XP_539984.3| PREDICTED: Werner syndrome ATP-dependent helicase [Canis lupus
familiaris]
Length = 1412
Score = 321 bits (822), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 170/380 (44%), Positives = 242/380 (63%), Gaps = 12/380 (3%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ LK YFG+S F+P Q VI ++E +RD +VVMATG GKSLC+Q PP+ +G+ LV+S
Sbjct: 508 INFLKIYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYSGRIGLVIS 567
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ LK I A FLGSAQ+ +V + G ++++++TPE C + F
Sbjct: 568 PLISLMEDQVLQLKMSNIPACFLGSAQS-KNVLEDIKLGKYRIVYITPE-FCSGNL-FLL 624
Query: 121 KLLKA--GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ L+A G+ L AVDEAHCISEWGHDFR ++ L L+ L VP VALTATA+ +R D
Sbjct: 625 QQLQADIGITLIAVDEAHCISEWGHDFRSSFRTLGSLKAILPSVPIVALTATASSSIRED 684
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG----AGSIIVY 234
I+ L LKNP +T FDR NL+ V+ + S + +L Q +++ + G I+Y
Sbjct: 685 IVRCLNLKNPQITCTGFDRPNLYLEVR--RKTGSILQDLDQFLVQKTSSIWEFEGPTIIY 742
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C + K E+++ L++L + G YH + K+R E H F+RDEI+ +VAT+AFGMGI+K
Sbjct: 743 CPSRKTTEQVTAELRKLKLACGAYHAGLDIKSRREIHHRFMRDEIQCVVATIAFGMGINK 802
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
D+R VIHYG PK +ESYYQE GR GRDG+ S C + +A ++ E +E R
Sbjct: 803 ADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPADICLNRHRLSEITSEKFRL 862
Query: 355 AIMESLLAAQRYCLLTTCRR 374
++ + ++Y T CRR
Sbjct: 863 YKLKMMAKMEKYLHSTRCRR 882
>gi|428773638|ref|YP_007165426.1| ATP-dependent DNA helicase RecQ [Cyanobacterium stanieri PCC 7202]
gi|428687917|gb|AFZ47777.1| ATP-dependent DNA helicase RecQ [Cyanobacterium stanieri PCC 7202]
Length = 713
Score = 321 bits (822), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 172/383 (44%), Positives = 237/383 (61%), Gaps = 18/383 (4%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ +LKKYFGY FRP Q+ ++Q I +D LV+M TG GKSLC+QLP L+ +V+S
Sbjct: 4 LSESLKKYFGYDSFRPGQEKIVQDAIAHKDLLVIMPTGGGKSLCFQLPALLKQGVTIVIS 63
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE-----TGYFQLLFMTPEKACIIP 115
PLISLMQDQV +L+ GI A +L S T + QTK G +LL++ PE+ ++
Sbjct: 64 PLISLMQDQVTALQDNGIGATYLNS--TLNYEQTKIRQRDILAGKIKLLYLAPER--LVS 119
Query: 116 ISFWSKLL----KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATA 171
+F L+ K G+ FA+DEAHCISEWGHDFR EY+Q+ LR VP ALTATA
Sbjct: 120 DTFQPFLVTLAQKIGIAAFAIDEAHCISEWGHDFRQEYRQMRYLRQQFPQVPITALTATA 179
Query: 172 TEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSI 231
T +V+ DII L L+NP + SF+R+NL+Y V+ + + ++L+ I++S G+G
Sbjct: 180 TVRVQRDIIEQLNLRNPQIHRFSFNRQNLYYEVQ--EKERRAYNQLLH-IIRSHQGSG-- 234
Query: 232 IVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMG 291
IVYC++ K EEI++ L + GV A YH + K R FIRD++R+MVAT+AFGMG
Sbjct: 235 IVYCISRKSTEEIAERLVKDGVSALPYHAGLSDKVRSHYQTSFIRDDVRIMVATVAFGMG 294
Query: 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTEN 351
I+KPDVR V+HY P+ +ESYYQESGR GRDG + C L Y+R + K ++ +
Sbjct: 295 INKPDVRLVVHYDLPRNIESYYQESGRAGRDGEKANCILLYSRGDKQKIHYFIRQKTNPQ 354
Query: 352 QRTAIMESLLAAQRYCLLTTCRR 374
++ L Y CRR
Sbjct: 355 EQKIAYAQLAKVIEYADTNYCRR 377
>gi|332240842|ref|XP_003269596.1| PREDICTED: Werner syndrome ATP-dependent helicase [Nomascus
leucogenys]
Length = 1433
Score = 321 bits (822), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 166/378 (43%), Positives = 242/378 (64%), Gaps = 9/378 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
V+ LK YFG+S F+P Q VI ++E +RD + VMATG GKSLC+Q PP+ GK LV+S
Sbjct: 538 VTCLKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVIS 597
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ LK I A FLGSAQ+++ V T + G ++++++TPE C +
Sbjct: 598 PLISLMEDQVLHLKMSNIPACFLGSAQSEN-VLTDIKLGKYRIVYITPE-YCSGNMGLLQ 655
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L G+ L AVDEAHCISEWGHDFR +++L L+T L VP VALTATA+ +R DI
Sbjct: 656 QLEADIGITLIAVDEAHCISEWGHDFRNSFRKLGSLKTALPKVPIVALTATASSSIREDI 715
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG---AGSIIVYCM 236
+ L L+NP +T FDR NL+ V+ + + + +L ++K+ + G I+YC
Sbjct: 716 VCCLNLRNPQITCTGFDRPNLYLEVR--RKTGNILQDLQPFLVKTSSHWEFKGPTIIYCP 773
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K ++++ L++L + GTYH M + R++ H F+RDEI+ ++AT+AFGMGI+K D
Sbjct: 774 SRKMTQQVTDELRKLNLSCGTYHAGMSFRTRKDIHHRFVRDEIQCVIATIAFGMGINKAD 833
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
+R VIHYG PK +ESYYQE GR GRDG+ S C + +A ++ E + E R
Sbjct: 834 IRQVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPADINVNRHLLTEIRNEKFRLYK 893
Query: 357 MESLLAAQRYCLLTTCRR 374
++ + ++Y + CRR
Sbjct: 894 LKMMAKMEKYLHSSRCRR 911
>gi|354566185|ref|ZP_08985358.1| ATP-dependent DNA helicase RecQ [Fischerella sp. JSC-11]
gi|353546693|gb|EHC16141.1| ATP-dependent DNA helicase RecQ [Fischerella sp. JSC-11]
Length = 719
Score = 320 bits (821), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 173/383 (45%), Positives = 245/383 (63%), Gaps = 26/383 (6%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK +FGY FRP Q+++++ + RD L++M TG GKSLC+QLP L+ +VVSPLI+
Sbjct: 11 LKYHFGYDNFRPGQREIVEDALSNRDLLIIMPTGGGKSLCFQLPALIKKGLTVVVSPLIA 70
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYF-----QLLFMTPEKACIIPISFW 119
LMQDQV +L++ G+ A FL S+ +S QT++ Y +LL++ PE+ +
Sbjct: 71 LMQDQVEALRKNGVAATFLNSSL--NSYQTRSREQYILQGKVKLLYVAPERLVSDRFLPF 128
Query: 120 SKLL--KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
L+ + G+ FA+DEAHC+SEWGHDFR EY+QL LR VP A TATAT++VR
Sbjct: 129 LDLIHHQVGISAFAIDEAHCVSEWGHDFRPEYRQLILLRKRYADVPTWAFTATATDRVRN 188
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DII L L+NP + IASF+R+NL+Y V+ + ++ EL+ E+++ G+G I+YC+T
Sbjct: 189 DIIQQLGLQNPSIHIASFNRQNLYYEVRP--KKKNAYAELL-ELIRDSEGSG--IIYCLT 243
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K V+EI+ L+ V A YH + + R + FIRD++RVMVAT+AFGMGI+KPDV
Sbjct: 244 RKKVDEITFKLQHDQVSALPYHAGLTDEERTQNQTRFIRDDVRVMVATIAFGMGINKPDV 303
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIH+ P+ LESYYQESGR GRDG AS C L+++ ++ +F NQ++
Sbjct: 304 RFVIHFDIPRNLESYYQESGRAGRDGEASRCTLFFSYADVKIIEFLI------NQKSEPQ 357
Query: 358 ESLLAAQR------YCLLTTCRR 374
E L+A Q+ Y T CRR
Sbjct: 358 EQLIAKQQLRQMIDYAEGTDCRR 380
>gi|296221953|ref|XP_002756974.1| PREDICTED: Werner syndrome ATP-dependent helicase [Callithrix
jacchus]
Length = 1433
Score = 320 bits (820), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 169/377 (44%), Positives = 235/377 (62%), Gaps = 6/377 (1%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ LK YFG+S F+P Q VI ++E +RD + VMATG GKSLC+Q PP+ GK LV+S
Sbjct: 536 ITCLKTYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVIS 595
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ L+ I A FLGSAQ+++ V + G +Q++++TPE C +S
Sbjct: 596 PLISLMEDQVLQLRMSNIPACFLGSAQSEN-VLRDVKLGKYQIVYITPE-YCSGNLSLLQ 653
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L G+ L AVDEAHCISEWGHDFR +++L L+T L VP VA+TATA+ +R DI
Sbjct: 654 QLEANIGITLIAVDEAHCISEWGHDFRNSFRELGSLKTALPLVPIVAVTATASSSIRKDI 713
Query: 180 INSLKLKNPYVTIASFDRKNLFY--GVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
+ L LKNP +T FDR NL+ G K N Q LV++ G I+YC +
Sbjct: 714 VCCLNLKNPQITCTGFDRPNLYLEVGRKTGNILQDLKPFLVRKTNTRWEFEGPTIIYCPS 773
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K E+++ L++L + GTYH M R + H F+RDEI+ ++AT+AFGMGI+K D+
Sbjct: 774 RKMTEQVTDELRKLKLSCGTYHAGMSFSKRTDTHHRFMRDEIQCVIATIAFGMGINKADI 833
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHYG PK +ESYYQE GR GRDG+ S C + +A ++ E E R +
Sbjct: 834 RQVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRLLLTEIHDEMFRLYKL 893
Query: 358 ESLLAAQRYCLLTTCRR 374
+ + ++Y + CRR
Sbjct: 894 KMMSKMEKYLHSSRCRR 910
>gi|414079433|ref|YP_007000857.1| ATP-dependent DNA helicase RecQ [Anabaena sp. 90]
gi|413972712|gb|AFW96800.1| ATP-dependent DNA helicase RecQ [Anabaena sp. 90]
Length = 729
Score = 320 bits (820), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 179/383 (46%), Positives = 235/383 (61%), Gaps = 26/383 (6%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK +FGY FRP Q+ +I+ +E RD +VVM TG GKSLC+QLP L+ +VVSPLI+
Sbjct: 11 LKHHFGYDQFRPGQRQIIEDALENRDLMVVMPTGGGKSLCFQLPALLKPGLTVVVSPLIA 70
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKAC---IIPISF 118
LMQDQV +L+ I+A FL S+ V+++ E G +LL++ PE+ +P+
Sbjct: 71 LMQDQVEALRTNNISATFLNSSLNAYKVRSREEAIMNGKIKLLYVAPERLVSERFLPLLD 130
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
K K G+ FA+DEAHC+SEWGHDFR EY+QL LR VP +ALTATAT++VR D
Sbjct: 131 VVKE-KVGISTFAIDEAHCVSEWGHDFRPEYRQLRLLRKRYPDVPTIALTATATDRVRAD 189
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKV-INRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
II L LK P + IASF+R+NL Y V+ NR + + E+V+E GS I+YC+T
Sbjct: 190 IIEQLGLKQPSIHIASFNRQNLHYEVRSKSNRAYAELLEIVRE------NEGSGIIYCLT 243
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K V+EI+ L+ V YH + + R + FIRD++RVMVAT+AFGMGI+KPDV
Sbjct: 244 RKKVDEITLKLQNDKVSVLPYHAGLSDEERSKNQTRFIRDDVRVMVATVAFGMGINKPDV 303
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R V+H P+ LESYYQESGR GRD S C L+ F GD E NQ+
Sbjct: 304 RFVVHSDLPRNLESYYQESGRAGRDDEPSKCTLF-----FNYGDIKTIEWSI-NQKPDPQ 357
Query: 358 ESLLAAQR------YCLLTTCRR 374
E L+A Q+ Y T CRR
Sbjct: 358 EQLIAKQQLRQVIDYAEGTDCRR 380
>gi|427717685|ref|YP_007065679.1| ATP-dependent DNA helicase RecQ [Calothrix sp. PCC 7507]
gi|427350121|gb|AFY32845.1| ATP-dependent DNA helicase RecQ [Calothrix sp. PCC 7507]
Length = 720
Score = 320 bits (820), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 176/381 (46%), Positives = 241/381 (63%), Gaps = 22/381 (5%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK +FGY FRP Q+ +I+ ++ RD +VVM TG GKSLC+QLP L+ +VVSPLI+
Sbjct: 11 LKYHFGYDRFRPGQRQIIEDALQNRDLMVVMPTGGGKSLCFQLPALLKKGLTVVVSPLIA 70
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV SL+ I+A FL S+ V+++ E G +LL++ PE+ +
Sbjct: 71 LMQDQVESLRNNNISATFLNSSLNAYKVRSREEAILNGRVKLLYVAPERLLSERFLPFLD 130
Query: 122 LL--KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
L+ + G+ FA+DEAHC+SEWGHDFR EY+QL LR +P VALTATAT++VR DI
Sbjct: 131 LINHQIGISSFAIDEAHCVSEWGHDFRPEYRQLKSLRKRYPDIPTVALTATATDRVRADI 190
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
I L LK P + IASF+R+NL+Y ++ ++ + EL++ I ++ GS IVYC+T K
Sbjct: 191 IQQLGLKQPSIHIASFNRQNLYYEIR--SKTKYAYAELLELIRET---EGSAIVYCLTRK 245
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+E++ L+ V A YH + + R + FIRD++RVMVAT+AFGMGI+KPDVR
Sbjct: 246 KVDELTFKLQNDKVAALPYHAGLSDEERSKNQTRFIRDDVRVMVATIAFGMGINKPDVRL 305
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIH+ P+ LESYYQESGR GRDG S C ++ F+ GD E +Q+T E
Sbjct: 306 VIHFDIPRNLESYYQESGRAGRDGEPSRCTVF-----FSFGDIKTIEWSI-DQKTDPQEQ 359
Query: 360 LLAAQR------YCLLTTCRR 374
L+A Q+ Y T CRR
Sbjct: 360 LIAKQQLRQMIDYAEGTDCRR 380
>gi|119583828|gb|EAW63424.1| Werner syndrome, isoform CRA_a [Homo sapiens]
Length = 1405
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 166/378 (43%), Positives = 241/378 (63%), Gaps = 9/378 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
V+ LK YFG+S F+P Q VI ++E +RD + VMATG GKSLC+Q PP+ GK LV+S
Sbjct: 510 VTCLKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVIS 569
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ LK I A FLGSAQ+++ V T + G ++++++TPE C +
Sbjct: 570 PLISLMEDQVLQLKMSNIPACFLGSAQSEN-VLTDIKLGKYRIVYVTPE-YCSGNMGLLQ 627
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L G+ L AVDEAHCISEWGHDFR +++L L+T L VP VALTATA+ +R DI
Sbjct: 628 QLEADIGITLIAVDEAHCISEWGHDFRDSFRKLGSLKTALPMVPIVALTATASSSIREDI 687
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG---AGSIIVYCM 236
+ L L+NP +T FDR NL+ V+ + + + +L ++K+ + G I+YC
Sbjct: 688 VRCLNLRNPQITCTGFDRPNLYLEVR--RKTGNILQDLQPFLVKTSSHWEFEGPTIIYCP 745
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K ++++ L++L + GTYH M R++ H F+RDEI+ ++AT+AFGMGI+K D
Sbjct: 746 SRKMTQQVTGELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQCVIATIAFGMGINKAD 805
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
+R VIHYG PK +ESYYQE GR GRDG+ S C + +A ++ E + E R
Sbjct: 806 IRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEIRNEKFRLYK 865
Query: 357 MESLLAAQRYCLLTTCRR 374
++ + ++Y + CRR
Sbjct: 866 LKMMAKMEKYLHSSRCRR 883
>gi|1280208|gb|AAC41981.1| unnamed protein product [Homo sapiens]
gi|3719421|gb|AAC63361.1| WRN [Homo sapiens]
gi|6272686|gb|AAF06162.1| WRN [Homo sapiens]
gi|60461921|gb|AAX21098.1| Werner syndrome helicase [Homo sapiens]
Length = 1432
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 166/378 (43%), Positives = 241/378 (63%), Gaps = 9/378 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
V+ LK YFG+S F+P Q VI ++E +RD + VMATG GKSLC+Q PP+ GK LV+S
Sbjct: 537 VTCLKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVIS 596
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ LK I A FLGSAQ+++ V T + G ++++++TPE C +
Sbjct: 597 PLISLMEDQVLQLKMSNIPACFLGSAQSEN-VLTDIKLGKYRIVYVTPE-YCSGNMGLLQ 654
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L G+ L AVDEAHCISEWGHDFR +++L L+T L VP VALTATA+ +R DI
Sbjct: 655 QLEADIGITLIAVDEAHCISEWGHDFRDSFRKLGSLKTALPMVPIVALTATASSSIREDI 714
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG---AGSIIVYCM 236
+ L L+NP +T FDR NL+ V+ + + + +L ++K+ + G I+YC
Sbjct: 715 VRCLNLRNPQITCTGFDRPNLYLEVR--RKTGNILQDLQPFLVKTSSHWEFEGPTIIYCP 772
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K ++++ L++L + GTYH M R++ H F+RDEI+ ++AT+AFGMGI+K D
Sbjct: 773 SRKMTQQVTGELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQCVIATIAFGMGINKAD 832
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
+R VIHYG PK +ESYYQE GR GRDG+ S C + +A ++ E + E R
Sbjct: 833 IRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEIRNEKFRLYK 892
Query: 357 MESLLAAQRYCLLTTCRR 374
++ + ++Y + CRR
Sbjct: 893 LKMMAKMEKYLHSSRCRR 910
>gi|119583830|gb|EAW63426.1| Werner syndrome, isoform CRA_c [Homo sapiens]
Length = 1406
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 166/378 (43%), Positives = 241/378 (63%), Gaps = 9/378 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
V+ LK YFG+S F+P Q VI ++E +RD + VMATG GKSLC+Q PP+ GK LV+S
Sbjct: 511 VTCLKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVIS 570
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ LK I A FLGSAQ+++ V T + G ++++++TPE C +
Sbjct: 571 PLISLMEDQVLQLKMSNIPACFLGSAQSEN-VLTDIKLGKYRIVYVTPE-YCSGNMGLLQ 628
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L G+ L AVDEAHCISEWGHDFR +++L L+T L VP VALTATA+ +R DI
Sbjct: 629 QLEADIGITLIAVDEAHCISEWGHDFRDSFRKLGSLKTALPMVPIVALTATASSSIREDI 688
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG---AGSIIVYCM 236
+ L L+NP +T FDR NL+ V+ + + + +L ++K+ + G I+YC
Sbjct: 689 VRCLNLRNPQITCTGFDRPNLYLEVR--RKTGNILQDLQPFLVKTSSHWEFEGPTIIYCP 746
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K ++++ L++L + GTYH M R++ H F+RDEI+ ++AT+AFGMGI+K D
Sbjct: 747 SRKMTQQVTGELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQCVIATIAFGMGINKAD 806
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
+R VIHYG PK +ESYYQE GR GRDG+ S C + +A ++ E + E R
Sbjct: 807 IRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEIRNEKFRLYK 866
Query: 357 MESLLAAQRYCLLTTCRR 374
++ + ++Y + CRR
Sbjct: 867 LKMMAKMEKYLHSSRCRR 884
>gi|110735439|ref|NP_000544.2| Werner syndrome ATP-dependent helicase [Homo sapiens]
gi|322510082|sp|Q14191.2|WRN_HUMAN RecName: Full=Werner syndrome ATP-dependent helicase; AltName:
Full=DNA helicase, RecQ-like type 3; Short=RecQ3;
AltName: Full=Exonuclease WRN; AltName: Full=RecQ
protein-like 2
gi|37953299|gb|AAR05448.1| Werner syndrome [Homo sapiens]
Length = 1432
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 166/378 (43%), Positives = 241/378 (63%), Gaps = 9/378 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
V+ LK YFG+S F+P Q VI ++E +RD + VMATG GKSLC+Q PP+ GK LV+S
Sbjct: 537 VTCLKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVIS 596
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ LK I A FLGSAQ+++ V T + G ++++++TPE C +
Sbjct: 597 PLISLMEDQVLQLKMSNIPACFLGSAQSEN-VLTDIKLGKYRIVYVTPE-YCSGNMGLLQ 654
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L G+ L AVDEAHCISEWGHDFR +++L L+T L VP VALTATA+ +R DI
Sbjct: 655 QLEADIGITLIAVDEAHCISEWGHDFRDSFRKLGSLKTALPMVPIVALTATASSSIREDI 714
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG---AGSIIVYCM 236
+ L L+NP +T FDR NL+ V+ + + + +L ++K+ + G I+YC
Sbjct: 715 VRCLNLRNPQITCTGFDRPNLYLEVR--RKTGNILQDLQPFLVKTSSHWEFEGPTIIYCP 772
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K ++++ L++L + GTYH M R++ H F+RDEI+ ++AT+AFGMGI+K D
Sbjct: 773 SRKMTQQVTGELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQCVIATIAFGMGINKAD 832
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
+R VIHYG PK +ESYYQE GR GRDG+ S C + +A ++ E + E R
Sbjct: 833 IRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEIRNEKFRLYK 892
Query: 357 MESLLAAQRYCLLTTCRR 374
++ + ++Y + CRR
Sbjct: 893 LKMMAKMEKYLHSSRCRR 910
>gi|306921707|dbj|BAJ17933.1| Werner syndrome, RecQ helicase-like [synthetic construct]
Length = 1432
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 166/378 (43%), Positives = 241/378 (63%), Gaps = 9/378 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
V+ LK YFG+S F+P Q VI ++E +RD + VMATG GKSLC+Q PP+ GK LV+S
Sbjct: 537 VTCLKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVIS 596
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ LK I A FLGSAQ+++ V T + G ++++++TPE C +
Sbjct: 597 PLISLMEDQVLQLKMSNIPACFLGSAQSEN-VLTDIKLGKYRIVYVTPE-YCSGNMGLLQ 654
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L G+ L AVDEAHCISEWGHDFR +++L L+T L VP VALTATA+ +R DI
Sbjct: 655 QLEADIGITLIAVDEAHCISEWGHDFRDSFRKLGSLKTALPMVPIVALTATASSSIREDI 714
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG---AGSIIVYCM 236
+ L L+NP +T FDR NL+ V+ + + + +L ++K+ + G I+YC
Sbjct: 715 VRCLNLRNPQITCTGFDRPNLYLEVR--RKTGNILQDLQPFLVKTSSHWEFEGPTIIYCP 772
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K ++++ L++L + GTYH M R++ H F+RDEI+ ++AT+AFGMGI+K D
Sbjct: 773 SRKMTQQVTGELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQCVIATIAFGMGINKAD 832
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
+R VIHYG PK +ESYYQE GR GRDG+ S C + +A ++ E + E R
Sbjct: 833 IRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEIRNEKFRLYK 892
Query: 357 MESLLAAQRYCLLTTCRR 374
++ + ++Y + CRR
Sbjct: 893 LKMMAKMEKYLHSSRCRR 910
>gi|119583829|gb|EAW63425.1| Werner syndrome, isoform CRA_b [Homo sapiens]
Length = 1436
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 166/378 (43%), Positives = 241/378 (63%), Gaps = 9/378 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
V+ LK YFG+S F+P Q VI ++E +RD + VMATG GKSLC+Q PP+ GK LV+S
Sbjct: 541 VTCLKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVIS 600
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ LK I A FLGSAQ+++ V T + G ++++++TPE C +
Sbjct: 601 PLISLMEDQVLQLKMSNIPACFLGSAQSEN-VLTDIKLGKYRIVYVTPE-YCSGNMGLLQ 658
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L G+ L AVDEAHCISEWGHDFR +++L L+T L VP VALTATA+ +R DI
Sbjct: 659 QLEADIGITLIAVDEAHCISEWGHDFRDSFRKLGSLKTALPMVPIVALTATASSSIREDI 718
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG---AGSIIVYCM 236
+ L L+NP +T FDR NL+ V+ + + + +L ++K+ + G I+YC
Sbjct: 719 VRCLNLRNPQITCTGFDRPNLYLEVR--RKTGNILQDLQPFLVKTSSHWEFEGPTIIYCP 776
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K ++++ L++L + GTYH M R++ H F+RDEI+ ++AT+AFGMGI+K D
Sbjct: 777 SRKMTQQVTGELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQCVIATIAFGMGINKAD 836
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
+R VIHYG PK +ESYYQE GR GRDG+ S C + +A ++ E + E R
Sbjct: 837 IRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEIRNEKFRLYK 896
Query: 357 MESLLAAQRYCLLTTCRR 374
++ + ++Y + CRR
Sbjct: 897 LKMMAKMEKYLHSSRCRR 914
>gi|355779620|gb|EHH64096.1| hypothetical protein EGM_17222, partial [Macaca fascicularis]
Length = 1237
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 169/377 (44%), Positives = 233/377 (61%), Gaps = 6/377 (1%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
V+ LK YFG+S F+P Q VI ++E +RD + VMATG GKSLC+Q PP+ GK LV+S
Sbjct: 341 VTCLKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVIS 400
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ LK I FLGSAQ+++ V T + G ++++++TPE C I
Sbjct: 401 PLISLMEDQVLQLKMSNIPTCFLGSAQSEN-VLTDIKLGKYRIVYITPE-YCSGNIGLLQ 458
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L G+ L AVDEAHCISEWGHDFR +++L L+T L VP VALTATAT +R DI
Sbjct: 459 QLEADIGITLIAVDEAHCISEWGHDFRNSFRKLGSLKTALPMVPIVALTATATSSIREDI 518
Query: 180 INSLKLKNPYVTIASFDRKNLFYGV--KVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
+ L L+NP + FDR NL+ V K N Q LV+ G I+YC +
Sbjct: 519 VRCLNLRNPQIICTGFDRPNLYLEVRRKTGNILQDLQPFLVKTTSSHWEFEGPTIIYCPS 578
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K E+++ L++L + TYH M R++ H F+RDEI+ ++AT+AFGMGI+K D+
Sbjct: 579 RKMTEQVTAELRKLNLSCETYHAGMSFSRRKDVHHRFVRDEIQCVIATIAFGMGINKADI 638
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHYG PK +ESYYQE GR GRDG+ S C + +A ++ E + E R +
Sbjct: 639 RQVIHYGAPKEMESYYQEIGRAGRDGLQSSCHILWAPADINLNRHLLTEIRNEKFRLYKL 698
Query: 358 ESLLAAQRYCLLTTCRR 374
+ + ++Y + CRR
Sbjct: 699 KMMAKMEKYLHSSRCRR 715
>gi|197927293|ref|NP_001128149.1| Werner syndrome ATP-dependent helicase [Pongo abelii]
gi|55726573|emb|CAH90053.1| hypothetical protein [Pongo abelii]
Length = 1486
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 165/378 (43%), Positives = 241/378 (63%), Gaps = 9/378 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
V+ LK YFG+S F+P Q VI ++E +RD + VMATG GKSLC+Q PP+ GK LV+S
Sbjct: 591 VTCLKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVIS 650
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ LK + A FLGSAQ+++ V T + G ++++++TPE C +
Sbjct: 651 PLISLMEDQVLQLKMSNVPACFLGSAQSEN-VLTDIKLGKYRIVYITPE-YCSGNMGLLQ 708
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L G+ L AVDEAHCISEWGHDFR +++L L+T L VP VALTATA+ ++ DI
Sbjct: 709 QLEADIGITLIAVDEAHCISEWGHDFRNSFRKLGSLKTALPMVPIVALTATASSSIQEDI 768
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG---AGSIIVYCM 236
+ L L+NP +T FDR NL+ V+ + + + +L ++K+ + G I+YC
Sbjct: 769 VRCLNLRNPQITCTGFDRPNLYLEVR--RKTGNILQDLQPFLVKTSSHWEFEGPTIIYCP 826
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K E+++ L++L + GTYH M R++ H F+RDEI+ ++AT+AFGMGI+K D
Sbjct: 827 SRKMTEQVTAELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQCVIATIAFGMGINKAD 886
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
+R VIHYG PK +ESYYQE GR GRDG+ S C + +A ++ E + E R
Sbjct: 887 IRQVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEIRNEKFRLYK 946
Query: 357 MESLLAAQRYCLLTTCRR 374
++ + ++Y + CRR
Sbjct: 947 LKMMAKMEKYLHSSRCRR 964
>gi|291386094|ref|XP_002709593.1| PREDICTED: Werner syndrome protein [Oryctolagus cuniculus]
Length = 1416
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 172/374 (45%), Positives = 232/374 (62%), Gaps = 6/374 (1%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
LK YFG+ F+P Q VI ++E +RD +VVMATG GKSLC+Q PP+ GK +V+ PLI
Sbjct: 514 LKTYFGHFSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYVGKIGVVICPLI 573
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLL 123
SLM+DQV+ L+ I A FLGSAQ+ +V + G + +++MTPE C + +L
Sbjct: 574 SLMEDQVLQLEMSNIPACFLGSAQS-KNVLEDIKLGKYCIVYMTPE-FCSGNLDLLQQLD 631
Query: 124 KA-GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINS 182
+ G+ L AVDEAHCISEWGHDFR ++ L L+T L VP VALTATA+ VR DI+
Sbjct: 632 ASIGITLIAVDEAHCISEWGHDFRSSFRSLGSLKTALPLVPIVALTATASSSVREDIVRC 691
Query: 183 LKLKNPYVTIASFDRKNLFY--GVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
LKL NP +T SFDR NL+ G K N Q LV++ G I+YC + K
Sbjct: 692 LKLSNPQITCTSFDRPNLYLEVGPKTGNILQDLKQFLVKKTSSDWEFEGPTIIYCPSRKM 751
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
E+++ L++L V GTYH M R+E H F+RD+I+ ++AT+AFGMGI+K D+R V
Sbjct: 752 TEQVTAELRKLNVACGTYHAGMSCSRRKEVHHSFMRDDIQCVIATIAFGMGINKADIRKV 811
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHYG PK +ESYYQE GR GRDG+ S C L +A ++ E + E R ++ L
Sbjct: 812 IHYGTPKEMESYYQEIGRAGRDGLQSSCHLLWAAADSNLNRHLLMEIRDEKFRLYKLQML 871
Query: 361 LAAQRYCLLTTCRR 374
++Y + CRR
Sbjct: 872 TKMEKYLHSSRCRR 885
>gi|67924781|ref|ZP_00518182.1| ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQ
[Crocosphaera watsonii WH 8501]
gi|416405865|ref|ZP_11687987.1| ATP-dependent DNA helicase RecQ [Crocosphaera watsonii WH 0003]
gi|67853376|gb|EAM48734.1| ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQ
[Crocosphaera watsonii WH 8501]
gi|357261215|gb|EHJ10512.1| ATP-dependent DNA helicase RecQ [Crocosphaera watsonii WH 0003]
Length = 710
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 171/381 (44%), Positives = 238/381 (62%), Gaps = 14/381 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ + LK +FGY FRP QK +I + +D LV+M TG GKSLC+QLP L+ +VVS
Sbjct: 8 LENALKDHFGYDQFRPGQKQIITEALNNKDLLVIMPTGGGKSLCFQLPALLKPGLCIVVS 67
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIPIS 117
PLI+LMQDQV SL GI A FL S + ++++ + G +LL++ PE+ ++ S
Sbjct: 68 PLIALMQDQVDSLLDNGIGATFLNSTLSREQLKSRENSILNGKIKLLYVAPER--LLNDS 125
Query: 118 FWSKL----LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATE 173
F + L K G+ FA+DEAHC+S WGHDFR EY+QL +LR VP VALTATAT+
Sbjct: 126 FLNFLDFLNQKIGLSSFAIDEAHCVSAWGHDFRPEYRQLKQLRFRYPTVPVVALTATATK 185
Query: 174 KVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIV 233
+VR DII L L+ P V +ASFDR NL+Y V+ +R +S+ L ++S G+G IV
Sbjct: 186 RVREDIIEQLGLEKPSVHLASFDRPNLYYEVQQKSR-RSYAQLL--NYIRSQEGSG--IV 240
Query: 234 YCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGID 293
YC++ K+VE ++ L+Q G++A YH M R FIRD++R++VAT+AFGMGI+
Sbjct: 241 YCLSRKNVETVAFRLQQDGIEALPYHAGMYDDERATNQTRFIRDDVRIIVATVAFGMGIN 300
Query: 294 KPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQR 353
KPDVR V+HY P+ LESYYQESGR GRDG + C L+ + + K D+ + + ++
Sbjct: 301 KPDVRFVVHYDLPRNLESYYQESGRAGRDGEPANCALFLSFGDLKKIDYLIDQKSSPKEQ 360
Query: 354 TAIMESLLAAQRYCLLTTCRR 374
+ L Y CRR
Sbjct: 361 KIARQQLRKVVDYAEANECRR 381
>gi|434399695|ref|YP_007133699.1| ATP-dependent DNA helicase RecQ [Stanieria cyanosphaera PCC 7437]
gi|428270792|gb|AFZ36733.1| ATP-dependent DNA helicase RecQ [Stanieria cyanosphaera PCC 7437]
Length = 708
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 167/375 (44%), Positives = 239/375 (63%), Gaps = 10/375 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK YFGY FRP QK++I+ + +D L++M TG GKSLC+QLP L+ LVVSPLI+
Sbjct: 8 LKHYFGYDSFRPGQKEIIEETLNNQDLLIIMPTGGGKSLCFQLPALLKPGLTLVVSPLIA 67
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIPI-SFWS 120
LMQDQV +LK RGI+A FL S ++++ G +LL++ PE+ +F
Sbjct: 68 LMQDQVDALKDRGIDATFLNSTLDYEEMRSRYGAILQGKIKLLYVAPERLLAEKFRTFLD 127
Query: 121 KLLKA-GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
K+ G+ A+DEAHCISEWGHDFR EY+QL + R VP +ALTATAT++V+ DI
Sbjct: 128 KIANNIGISTIAIDEAHCISEWGHDFRPEYRQLKQFRQRYPQVPLLALTATATKRVQQDI 187
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
I L L+NP V + SF+R N+ Y V+ + Q +L+QEI +S +GAG IVYC++ +
Sbjct: 188 IEQLGLQNPSVHLNSFNRFNIHYQVQP--KQQRSYHQLLQEI-RSQSGAG--IVYCLSRR 242
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
+VEE++ L++ G+KA YH M + R F+RD+++VMVAT+AFGMGI+KPDVR
Sbjct: 243 NVEEVAYKLQKDGIKALPYHAGMTDEKRTINQTRFLRDDVQVMVATIAFGMGINKPDVRF 302
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V HY P++LE++YQESGR GRDG ++ L+++ ++ K D+ + ++ +
Sbjct: 303 VFHYDLPRSLENFYQESGRAGRDGESATSILFFSMGDWKKIDYLIEQKPDPQEQRIARQQ 362
Query: 360 LLAAQRYCLLTTCRR 374
L Y CRR
Sbjct: 363 LNQVIDYAEGVDCRR 377
>gi|109086093|ref|XP_001085031.1| PREDICTED: Werner syndrome ATP-dependent helicase-like [Macaca
mulatta]
Length = 1432
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 169/377 (44%), Positives = 233/377 (61%), Gaps = 6/377 (1%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
V+ LK YFG+S F+P Q VI ++E +RD + VMATG GKSLC+Q PP+ GK LV+S
Sbjct: 536 VTCLKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVIS 595
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ LK I FLGSAQ+++ V T + G ++++++TPE C I
Sbjct: 596 PLISLMEDQVLQLKMSNIPTCFLGSAQSEN-VLTDIKLGKYRIVYITPE-YCSGNIGLLQ 653
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L G+ L AVDEAHCISEWGHDFR +++L L+T L VP VALTATAT +R DI
Sbjct: 654 QLEADIGITLIAVDEAHCISEWGHDFRNSFRKLGSLKTALPMVPIVALTATATSSIREDI 713
Query: 180 INSLKLKNPYVTIASFDRKNLFYGV--KVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
+ L L+NP + FDR NL+ V K N Q LV+ G I+YC +
Sbjct: 714 VRCLNLRNPQIICTGFDRPNLYLEVRRKTGNILQDLQPFLVKTTSSHWEFEGPTIIYCPS 773
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K E+++ L++L + TYH M R++ H F+RDEI+ ++AT+AFGMGI+K D+
Sbjct: 774 RKMTEQVTAELRKLNLSCETYHAGMSFSRRKDVHHKFVRDEIQCVIATIAFGMGINKADI 833
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHYG PK +ESYYQE GR GRDG+ S C + +A ++ E + E R +
Sbjct: 834 RQVIHYGAPKEMESYYQEIGRAGRDGLQSSCHILWAPADINLNRHLLTEIRNEKFRLYKL 893
Query: 358 ESLLAAQRYCLLTTCRR 374
+ + ++Y + CRR
Sbjct: 894 KMMAKMEKYLHSSRCRR 910
>gi|428302021|ref|YP_007140327.1| ATP-dependent DNA helicase RecQ [Calothrix sp. PCC 6303]
gi|428238565|gb|AFZ04355.1| ATP-dependent DNA helicase RecQ [Calothrix sp. PCC 6303]
Length = 724
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 172/383 (44%), Positives = 241/383 (62%), Gaps = 22/383 (5%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+TLK YFGY FR Q+++I+ ++ +D +VVM TG GKSLC+QLP L+ +VVSPL
Sbjct: 9 TTLKYYFGYDNFRLGQREIIEEALQNKDLMVVMPTGGGKSLCFQLPALMKKGVTIVVSPL 68
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIPISFW 119
I+LMQDQV +L++ GI A FL S+ V+++ + G +L+++ PE+ +
Sbjct: 69 IALMQDQVETLRKNGIAATFLNSSLNSYQVRSREQAILEGKVKLVYVAPERLVSERFLPF 128
Query: 120 SKLL--KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
L+ + G+ FA+DEAHC+SEWGHDFR EY+QL LR G+P ALTATAT++VR
Sbjct: 129 LDLVNHQVGIAGFAIDEAHCVSEWGHDFRPEYRQLITLRQRYSGIPLFALTATATDRVRA 188
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DII L L+ P + IASF+R+NL+Y V+ + ++ E+++ I +S A S I+YC+T
Sbjct: 189 DIIEQLGLQEPSIHIASFNRQNLYYEVR--PKTKTVYAEVLELIRESEA---STIIYCLT 243
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K V+E++ L+ + A YH + + R FIRD++RVMVAT+AFGMGIDKPDV
Sbjct: 244 RKQVDELTFKLQHDKISALAYHAGLSDEERTNNQTRFIRDDVRVMVATVAFGMGIDKPDV 303
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHY P+ +E YYQESGR GRDG S C ++ F GD E NQ+T
Sbjct: 304 RLVIHYNLPRNIEGYYQESGRAGRDGEPSRCTMF-----FGVGDIKTIEWSI-NQKTDSQ 357
Query: 358 ESLLAAQR------YCLLTTCRR 374
E L+A Q+ + T CRR
Sbjct: 358 EQLIAKQQLRQVIDFAEGTDCRR 380
>gi|114619614|ref|XP_528104.2| PREDICTED: Werner syndrome ATP-dependent helicase [Pan troglodytes]
Length = 1432
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 166/378 (43%), Positives = 240/378 (63%), Gaps = 9/378 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
V+ LK YFG+S F+P Q VI ++E +RD + VMATG GKSLC+Q PP+ GK LV+S
Sbjct: 537 VTCLKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVIS 596
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ LK I A FLGSAQ+++ V T + G ++++++TPE C +
Sbjct: 597 PLISLMEDQVLQLKMSNIPACFLGSAQSEN-VLTDIKLGKYRIVYVTPE-YCSGNMGLLQ 654
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L G+ L AVDEAHCISEWGHDFR +++L L+T L VP VALTATA+ +R DI
Sbjct: 655 QLEADIGITLIAVDEAHCISEWGHDFRNSFRKLGSLKTALPMVPIVALTATASSSIREDI 714
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG---AGSIIVYCM 236
+ L L+NP +T FDR NL+ V+ + + + +L ++K+ + G I+YC
Sbjct: 715 VRCLNLRNPQITCTGFDRPNLYLEVR--RKTGNILQDLQPFLVKTSSHWEFEGPTIIYCP 772
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K ++++ L++L + GTYH M R++ H F+RDEI+ ++AT+AFGMGI+K D
Sbjct: 773 SRKMTQQVTGELRKLNLSCGTYHAGMSFNTRKDIHHRFVRDEIQCVIATIAFGMGINKAD 832
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
+R VIHYG PK +ESYYQE GR GRDG+ S C + +A ++ E + E R
Sbjct: 833 IRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEIRNEKFRLYK 892
Query: 357 MESLLAAQRYCLLTTCRR 374
++ ++Y + CRR
Sbjct: 893 LKMTAKMEKYLHSSRCRR 910
>gi|428210292|ref|YP_007094645.1| ATP-dependent DNA helicase RecQ [Chroococcidiopsis thermalis PCC
7203]
gi|428012213|gb|AFY90776.1| ATP-dependent DNA helicase RecQ [Chroococcidiopsis thermalis PCC
7203]
Length = 708
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 172/380 (45%), Positives = 241/380 (63%), Gaps = 12/380 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ + LK YFGY FRP QK ++++ ++ RD L+VM TG GKSLC+QLP L+ +VVS
Sbjct: 7 LEAALKHYFGYDSFRPGQKQIVEQALQNRDQLIVMPTGGGKSLCFQLPALLQPGLTVVVS 66
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPIS 117
PLI+LMQDQV +L+ GI A FL S+ V+++ + +G +LL++ PE+
Sbjct: 67 PLIALMQDQVEALRDNGIGATFLNSSLNLHQVRSREQAILSGKTKLLYVAPERLLNEKFL 126
Query: 118 FWSKLL--KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
+ L+ K G+ FA+DEAHC+SEWGHDFR EY+QL +LR GVP +ALTATAT++V
Sbjct: 127 PFLDLIREKIGIAAFAIDEAHCVSEWGHDFRPEYRQLKQLRQRYPGVPTLALTATATDRV 186
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYC 235
R DII L L P + IASF+R NL+Y V+ + QS+ +L+Q I +S GS IVYC
Sbjct: 187 RQDIIQQLGLSQPSIHIASFNRPNLYYEVQPKQK-QSY-SQLLQIIRQS---EGSGIVYC 241
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
++ + V+EI+ L+Q + A YH + R E FIRD++RVMVAT+AFGMGI+KP
Sbjct: 242 LSRRKVDEIAFKLQQDKIAALPYHAGLSDTERAENQTRFIRDDVRVMVATIAFGMGINKP 301
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGE-SQTENQRT 354
DVR VIH+ P+ +E YYQESGR GRDG + C L+ + ++ + + + QR
Sbjct: 302 DVRFVIHHDLPRNIEGYYQESGRAGRDGETARCTLFLGYGDIKTIEYLIDQKTDLQGQRI 361
Query: 355 AIMESLLAAQRYCLLTTCRR 374
A + L + T CRR
Sbjct: 362 A-RQQLRQVIDFAEGTDCRR 380
>gi|119510429|ref|ZP_01629563.1| ATP-dependent DNA helicase [Nodularia spumigena CCY9414]
gi|119464958|gb|EAW45861.1| ATP-dependent DNA helicase [Nodularia spumigena CCY9414]
Length = 721
Score = 318 bits (815), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 171/381 (44%), Positives = 240/381 (62%), Gaps = 22/381 (5%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK FGY FRP Q+ +I+ +E RD LVVM TG GKSLC+QLP L+ +VVSPLI+
Sbjct: 11 LKYNFGYDQFRPGQRQIIEDALENRDLLVVMPTGGGKSLCFQLPALIKSGLTVVVSPLIA 70
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV SL+ I+A FL S+ V+++ E G +LL++ PE+ +
Sbjct: 71 LMQDQVESLRNNNISATFLNSSLNPHKVRSREEAIRNGKVRLLYVAPERLLSERFLPFLD 130
Query: 122 LL--KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
L+ + G+ FA+DEAHC+SEWGHDFR EY+QL LR VP +ALTATAT++VR DI
Sbjct: 131 LVHHQIGISTFAIDEAHCVSEWGHDFRPEYRQLKSLRKRYPDVPTIALTATATDRVRGDI 190
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
I L LK P + +ASF+R+NL+Y V+ + +S E+++ I ++ GS I+YC+T K
Sbjct: 191 IQQLGLKQPSIHLASFNRQNLYYEVRP--KTKSAYAEILELIRET---DGSTIIYCLTRK 245
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+E++ L+ V A +YH + + R + FIRD++RV+VAT+AFGMGI+KPDVR
Sbjct: 246 KVDELTFKLQNDKVVALSYHAGLSDEERSKNQTRFIRDDVRVIVATIAFGMGINKPDVRL 305
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V+H+ P+ LESYYQESGR GRD S C ++++ S+ ++ NQ+ E
Sbjct: 306 VVHFDLPRNLESYYQESGRAGRDSEPSRCTMFFSFSDIKTIEWSI------NQKADPQEQ 359
Query: 360 LLAAQR------YCLLTTCRR 374
L+A Q+ Y T CRR
Sbjct: 360 LIAKQQLRQVIDYAEGTDCRR 380
>gi|254425231|ref|ZP_05038949.1| ATP-dependent DNA helicase RecQ [Synechococcus sp. PCC 7335]
gi|196192720|gb|EDX87684.1| ATP-dependent DNA helicase RecQ [Synechococcus sp. PCC 7335]
Length = 738
Score = 318 bits (815), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 160/382 (41%), Positives = 241/382 (63%), Gaps = 12/382 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ S LK +FG+ FR Q+ +++++++ +D LV+M TG GKSLCYQLP L+ T +V+S
Sbjct: 8 LESALKHFFGHDQFRFEQRSIVEQVLKNKDVLVIMPTGGGKSLCYQLPALLRPGTTIVIS 67
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIPIS 117
PLI+LMQDQV++LK GI A FL S + V+++ + G ++L++ PE+
Sbjct: 68 PLIALMQDQVVALKDNGIEATFLNSTLSFEEVRSRQKDLLMGKIKILYIAPERLFTSSFH 127
Query: 118 FWSKLL--KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
+ K L K G+ FA+DEAHC+SEWGHDFR EY+QL +++ +P +ALTATAT++V
Sbjct: 128 DFLKQLSQKVGISTFAIDEAHCVSEWGHDFRPEYRQLFQIKQLYPQIPIIALTATATQRV 187
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVA---GAGSII 232
R DI+ L+L +P V I+SF+R+NL+Y +VI + + +L+ +I + GAG I
Sbjct: 188 RTDIVQQLRLNDPTVYISSFNRQNLYY--EVIQKSRKPYQQLLAKIQQHQGKEKGAG--I 243
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
+YC++ K V+E+S L + G+ A YH + + RE FIRD+++++VAT+AFGMGI
Sbjct: 244 IYCLSRKHVDEVSNNLTKDGISALPYHAGLTNTQRENNQTKFIRDDVQIIVATVAFGMGI 303
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ 352
+KPDVR VIHY P+ LESYYQESGR GRD A+ C + + + + G+ +
Sbjct: 304 NKPDVRFVIHYDLPRNLESYYQESGRAGRDSEAASCTILFGWGDVHTVRYLIGQKADPGE 363
Query: 353 RTAIMESLLAAQRYCLLTTCRR 374
+ + L Y CRR
Sbjct: 364 QRIAQQQLNQIISYAESPICRR 385
>gi|332707801|ref|ZP_08427828.1| ATP-dependent DNA helicase RecQ [Moorea producens 3L]
gi|332353504|gb|EGJ33017.1| ATP-dependent DNA helicase RecQ [Moorea producens 3L]
Length = 709
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 168/376 (44%), Positives = 237/376 (63%), Gaps = 12/376 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK +FG+ FRP Q+ +I+ ++ +D L++M TG GKSLCYQLP L+ +VVSPLIS
Sbjct: 11 LKHFFGHDCFRPGQQQIIEEALQNQDLLIIMPTGGGKSLCYQLPALLKPGLTVVVSPLIS 70
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIP-ISFWS 120
LMQDQV SL+ GI A F+ S + ++++ G +LL+++PE+ I F
Sbjct: 71 LMQDQVTSLEDNGIGATFINSTLSFQQMRSREAAILEGKIKLLYVSPERLLAEQFIPFLD 130
Query: 121 KLL-KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
++ + G+ FA+DEAHC+S+WGHDFR +Y+QL LR +ALTATAT +V+ DI
Sbjct: 131 RVRSQIGIPTFAIDEAHCVSQWGHDFRPDYRQLKLLRNRYPNSSVLALTATATNRVQQDI 190
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSV-AGAGSIIVYCMTI 238
I L+L+ P V IASF+R NL+Y V+ R QS+ Q++LK + + GS IVYC +
Sbjct: 191 IQQLELRQPKVHIASFNRPNLYYDVQPKQR-QSY-----QQLLKQIRSHQGSGIVYCTSR 244
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
+ VEE++ L+ G+ A YHG M KAR FIRD++RV+VAT+AFGMGI+KPDVR
Sbjct: 245 RSVEEVAFRLQNDGISALPYHGGMTDKARATNQNRFIRDDVRVIVATVAFGMGINKPDVR 304
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
VIHY P+ +ESYYQESGR GRDG + C + Y+ S+ +K + + ++ +
Sbjct: 305 FVIHYDLPRNIESYYQESGRAGRDGEPATCTVLYSASDISKLHYLIDQKPDPKEQRIAYQ 364
Query: 359 SLLAAQRYCLLTTCRR 374
L Y T CRR
Sbjct: 365 QLNQIVDYAEGTDCRR 380
>gi|434406622|ref|YP_007149507.1| ATP-dependent DNA helicase RecQ [Cylindrospermum stagnale PCC 7417]
gi|428260877|gb|AFZ26827.1| ATP-dependent DNA helicase RecQ [Cylindrospermum stagnale PCC 7417]
Length = 723
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 171/382 (44%), Positives = 241/382 (63%), Gaps = 24/382 (6%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK +FGY FRP Q+ +I+ ++ RD L++M TG GKSLC+QLP L+ +VVSPLI+
Sbjct: 11 LKYHFGYDQFRPGQRQIIEDALQNRDLLIIMPTGGGKSLCFQLPALLKPGLTVVVSPLIA 70
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKAC---IIPISF 118
LMQDQV +L+ I+A FL S+ V+++ E G +LL++ PE+ +P+
Sbjct: 71 LMQDQVEALRTNNISATFLNSSLNAFKVRSREEALLQGKIKLLYVAPERLLSERFLPLLD 130
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
K K G+ FA+DEAHC+SEWGHDFR EY+Q+ LR VP +ALTATAT++VR D
Sbjct: 131 LVKE-KIGISTFAIDEAHCVSEWGHDFRPEYRQMKSLRKRYPDVPTLALTATATDRVRAD 189
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
II L LK P + IASF+R+NL+Y V+ + ++ EL+ I++ G+G I+YC+T
Sbjct: 190 IIQQLGLKQPSIHIASFNRQNLYYEVRT--KTKTAYAELLG-IIRENQGSG--IIYCLTR 244
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K V+E++ L+ + +YH + R + FIRD++RVMVAT+AFGMGI+KPDVR
Sbjct: 245 KKVDELTLKLQHDKISVLSYHAGLTDDERSKNQTRFIRDDVRVMVATIAFGMGINKPDVR 304
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
VIHY P+ LESYYQESGR GRD S C L+++ S+ ++ NQ+T E
Sbjct: 305 FVIHYDLPRNLESYYQESGRAGRDDEPSRCTLFFSFSDIKTIEWSI------NQKTDPQE 358
Query: 359 SLLAAQR------YCLLTTCRR 374
L++ Q+ Y T CRR
Sbjct: 359 QLISKQQLRQVIDYAEGTDCRR 380
>gi|427713763|ref|YP_007062387.1| ATP-dependent DNA helicase RecQ [Synechococcus sp. PCC 6312]
gi|427377892|gb|AFY61844.1| ATP-dependent DNA helicase RecQ [Synechococcus sp. PCC 6312]
Length = 730
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 168/389 (43%), Positives = 240/389 (61%), Gaps = 23/389 (5%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ LK YFGY FRP Q D+I + ++D L ++ TG GKS+C+QLP L+ LVVSP
Sbjct: 4 LEALKHYFGYEAFRPGQADIITASLNQQDVLAILPTGGGKSICFQLPALLKTGITLVVSP 63
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIPISF 118
LI+LM DQV++L++ GI A FL S + + + + G +LL++ PE+ ++ SF
Sbjct: 64 LIALMLDQVVALQKNGIAATFLNSTLSAAEARGRIAAIMAGEVKLLYVAPER--LVSDSF 121
Query: 119 WSKLLKA-----GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATE 173
+ LL+ G+ VDEAHC+SEWGHDFR +Y+QL +LR +P +ALTATAT
Sbjct: 122 -TALLETIHQTVGISSIVVDEAHCVSEWGHDFRPDYRQLSRLRERFPTIPVIALTATATH 180
Query: 174 KVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIV 233
+VR DI L LK P+V +ASF+R NL+Y V +RG+ + EL I K G+G I+
Sbjct: 181 RVRTDITEQLSLKKPFVHVASFNRPNLYYEVIEKSRGKVSLSELTGYI-KETEGSG--II 237
Query: 234 YCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGID 293
YCM+ K VE+++ L + G+ A YH + ++ R + FIRD++++MVAT+AFGMGI+
Sbjct: 238 YCMSRKQVEKLASELNENGISALPYHAGLSNETRTDHQTRFIRDDVQIMVATVAFGMGIN 297
Query: 294 KPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFY--------CG 345
KPDVR VIHY P+T+E YYQESGR GRDG + C L+++ + + D++
Sbjct: 298 KPDVRFVIHYDLPQTIEGYYQESGRAGRDGEPARCTLFFSPGDIKQADWFIQNKVHPETN 357
Query: 346 ESQTENQRTAIMESLLAAQRYCLLTTCRR 374
E + QR A + L Y T CRR
Sbjct: 358 EPLEDEQRIA-RQQLRQIAAYADSTLCRR 385
>gi|88603641|ref|YP_503819.1| ATP-dependent DNA helicase RecQ [Methanospirillum hungatei JF-1]
gi|88189103|gb|ABD42100.1| ATP-dependent DNA helicase RecQ [Methanospirillum hungatei JF-1]
Length = 606
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 165/375 (44%), Positives = 230/375 (61%), Gaps = 10/375 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
L ++FGY +RP QK++I ++E RD L V+ATG GKSLCYQ+P L+ +V+SPL
Sbjct: 10 DVLHRWFGYRTYRPGQKEIITHVLEGRDVLAVIATGGGKSLCYQIPALIRDGVGIVISPL 69
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
I+LM+DQV L + GI A FL S Q S++ G +LL+++PE+ ++ SF
Sbjct: 70 IALMKDQVDCLAESGIPAAFLNSTQDVKDKRSIEGSILDGSLKLLYISPER--LVQPSFI 127
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
L + LFA+DEAHCIS+WGH+FR EY++L +R VP +ALTATAT VR DI
Sbjct: 128 EFLKSTRISLFAIDEAHCISQWGHEFRPEYRKLSIIRRTFADVPIIALTATATPSVRSDI 187
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
I+ L L NP V + SF+R+NL Y + G+ +LVQ LKS S IVYC + +
Sbjct: 188 ISELSLHNPAVFVGSFNRENLIYRIVKKEDGEQ---QLVQ-FLKSHQNE-SGIVYCFSKR 242
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V ++++ L++ G A YH + R E F+RDE+R++VAT+AFGMGI+KPDVR
Sbjct: 243 QVTDLARVLQKNGFSALPYHADLPKSVRHETQDRFLRDEVRIIVATVAFGMGINKPDVRF 302
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V+H+ PK LE YYQE+GR GRDG + C L Y+R +F K ++ + +R +
Sbjct: 303 VVHFDLPKNLEHYYQETGRAGRDGDPAECLLLYSRGDFRKIEYLIEQMAEGTERQVSLRK 362
Query: 360 LLAAQRYCLLTTCRR 374
L YC CRR
Sbjct: 363 LHEMVGYCESRACRR 377
>gi|435850506|ref|YP_007312092.1| ATP-dependent DNA helicase RecQ [Methanomethylovorans hollandica
DSM 15978]
gi|433661136|gb|AGB48562.1| ATP-dependent DNA helicase RecQ [Methanomethylovorans hollandica
DSM 15978]
Length = 692
Score = 317 bits (813), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 161/377 (42%), Positives = 234/377 (62%), Gaps = 10/377 (2%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M TL+KYFGY FRP Q+D+I+ +I +D V+M TG GKS+CYQLP L+ +VVS
Sbjct: 1 MHRTLRKYFGYDTFRPLQEDIIKDVIAGKDVFVLMPTGGGKSICYQLPALLMNGVTVVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L+ G+ A +L S + + ++ + E +LL++ PE+ +
Sbjct: 61 PLISLMKDQVDTLRANGVEAAYLNSTLSYKESNQIKQELENNIIKLLYVAPERLTLSSTL 120
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
+K V LFA+DE+HCISEWGHDFR EY++L L+ +P +ALTATAT KVR
Sbjct: 121 TLLDRIK--VNLFAIDESHCISEWGHDFRPEYRKLSILKRKYPHIPIIALTATATPKVRK 178
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
D I+ L +++ +ASF+RKNL Y V+ + +++V+ + K +G I+YC +
Sbjct: 179 DTISQLHIEDCNTYVASFNRKNLLYQVRP---KKETYEQIVEFLRKRKDKSG--IIYCQS 233
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K V+E++ L++ G A YH + AR +FI+D+ ++VAT+AFGMGIDKP+V
Sbjct: 234 RKTVDELTGKLRKSGFNALPYHAGLSDAARSRNQDIFIKDDAEIIVATIAFGMGIDKPNV 293
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHY P+ LESYYQE+GR GRDG+ C L+++R + K D++ + +R A
Sbjct: 294 RFVIHYDLPRNLESYYQETGRGGRDGLECECILFFSRGDKYKIDYFIDQIAKSEEREAAR 353
Query: 358 ESLLAAQRYCLLTTCRR 374
L YC T CRR
Sbjct: 354 LKLKEVMDYCQSTICRR 370
>gi|440680362|ref|YP_007155157.1| ATP-dependent DNA helicase RecQ [Anabaena cylindrica PCC 7122]
gi|428677481|gb|AFZ56247.1| ATP-dependent DNA helicase RecQ [Anabaena cylindrica PCC 7122]
Length = 724
Score = 317 bits (813), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 173/383 (45%), Positives = 239/383 (62%), Gaps = 26/383 (6%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK +FGY FRP Q+ +I+ ++ RD +VVM TG GKSLC+QLP L+ +VVSPLI+
Sbjct: 11 LKYHFGYDQFRPGQRQIIEDALQNRDLMVVMPTGGGKSLCFQLPALLKPGLTVVVSPLIA 70
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKAC---IIPISF 118
LMQDQV +L+ I+A FL S+ V+++ E G +LL++ PE+ +P+
Sbjct: 71 LMQDQVEALRNNNISATFLNSSLNSYKVRSREEAIMNGKVRLLYVAPERLVSDRFLPLLD 130
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
K K G+ FA+DEAHC+SEWGHDFR EY+QL LR VP +ALTATAT++VR D
Sbjct: 131 VVKE-KIGISTFAIDEAHCVSEWGHDFRPEYRQLKLLRKRYPDVPTIALTATATDRVRAD 189
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVIN-RGQSFVDELVQEILKSVAGAGSIIVYCMT 237
II L LK P + IASF+R+NL+Y V+ + R + + E+V+E GS I+YC+T
Sbjct: 190 IIEQLGLKQPSIHIASFNRQNLYYEVRAKSKRAYAEILEIVRE------NEGSGIIYCLT 243
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K V+E++ L++ V A YH + R + FIRD++RVMVAT+AFGMGI+KPDV
Sbjct: 244 RKKVDELTFKLQKDKVAALPYHAGLSDDERSKNQTRFIRDDVRVMVATIAFGMGINKPDV 303
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIH P+ +E YYQESGR GRD S C L+++ ++ ++ NQ+T
Sbjct: 304 RFVIHSDLPRNIEGYYQESGRAGRDDEPSRCTLFFSFADVKTIEWSI------NQKTDPQ 357
Query: 358 ESLLAAQR------YCLLTTCRR 374
E L+A Q+ Y T CRR
Sbjct: 358 EQLIAKQQLRQVIDYAEGTDCRR 380
>gi|300868275|ref|ZP_07112904.1| ATP-dependent DNA helicase [Oscillatoria sp. PCC 6506]
gi|300333710|emb|CBN58088.1| ATP-dependent DNA helicase [Oscillatoria sp. PCC 6506]
Length = 726
Score = 317 bits (812), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 162/377 (42%), Positives = 237/377 (62%), Gaps = 14/377 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK +FGY FRP Q+++++ + KRD L+VM TG GKSLC+QLP L+ +VVSPLI+
Sbjct: 19 LKHFFGYDSFRPGQREIVEAALSKRDMLIVMPTGGGKSLCFQLPALLKPGLTVVVSPLIA 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKAC---IIPISF 118
LMQDQV SL+ GI A FL S + S +T G +LL++ PE+ +P F
Sbjct: 79 LMQDQVESLRDNGIGATFLNSTLSLMETRSRETAILDGKIKLLYVAPERLLSERFLP--F 136
Query: 119 WSKLLKA-GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
++ + G+ FA+DEAHC+SEWGHDFR +Y+Q+ ++R +P +ALTATAT++VR+
Sbjct: 137 LDQVAASLGISAFAIDEAHCVSEWGHDFRPDYRQILQVRDRYPHIPIMALTATATDRVRL 196
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI+ L L+ PY+ +ASF+R NL+Y V+ + SF EL+Q I K+ GS I+YC++
Sbjct: 197 DIMQQLALREPYIHVASFNRPNLYYEVRAKTK-HSFA-ELLQIIDKN---GGSGIIYCLS 251
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K+V+E++ L+Q+G+ A YH + R FIRD++++MVAT+AFGMGI+KPDV
Sbjct: 252 RKNVDELAYKLQQVGISALPYHAGLNDSDRTSNQTRFIRDDVQIMVATVAFGMGINKPDV 311
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R V+HY P+ LE YYQESGR GRDG + C L+ + ++ + ++
Sbjct: 312 RFVVHYNLPRNLEGYYQESGRAGRDGEPAQCILFLGYGDRKTIEYLIEQKPDPQEQRIAT 371
Query: 358 ESLLAAQRYCLLTTCRR 374
+ Y + CRR
Sbjct: 372 QQFRRVIDYAEASDCRR 388
>gi|440756898|ref|ZP_20936098.1| ATP-dependent DNA helicase RecQ [Microcystis aeruginosa TAIHU98]
gi|440172927|gb|ELP52411.1| ATP-dependent DNA helicase RecQ [Microcystis aeruginosa TAIHU98]
Length = 701
Score = 317 bits (812), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 162/378 (42%), Positives = 237/378 (62%), Gaps = 16/378 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK +FGY FRP Q+ +I+ + +D LV+M TG GKSLC+QLP L+ +VVSPLI+
Sbjct: 11 LKHHFGYDQFRPNQRQIIEAALNDQDLLVIMPTGGGKSLCFQLPALIKKGVTVVVSPLIA 70
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV +L GI A FL S V+ + G +LL++ PE+ ++ SF
Sbjct: 71 LMQDQVTALADNGIGATFLNSTLNAKQVRDRESLILQGKIKLLYVAPER--LLSPSFLDF 128
Query: 122 LL----KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
L G+ AVDEAHC+S+WGHDFR EY+Q+ ++R VP +ALTATAT++VR
Sbjct: 129 LAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTATATQQVRE 188
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGA-GSIIVYCM 236
DII L L++ + IASF+R NL+Y V+ +S+ Q++ + + G GS IVYC+
Sbjct: 189 DIIQQLGLRDASIHIASFNRPNLYYEVRA-KTSKSY-----QQLYQYIKGQKGSGIVYCI 242
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K V+++++ L++ G+ A YH M + R E FIRD++++MVAT+AFGMGI+KPD
Sbjct: 243 SRKTVDQVAEQLQKDGINALPYHAGMNDQERSENQTRFIRDDVQIMVATIAFGMGINKPD 302
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR V+HY P+ LE YYQESGR GRDG + C L+++ ++ K +++ + +N++
Sbjct: 303 VRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTEQNEQQKA 362
Query: 357 MESLLAAQRYCLLTTCRR 374
+ L Y T CRR
Sbjct: 363 RQQLRQVLDYAEGTECRR 380
>gi|425450984|ref|ZP_18830806.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 7941]
gi|389767941|emb|CCI06812.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 7941]
Length = 701
Score = 317 bits (811), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 162/378 (42%), Positives = 235/378 (62%), Gaps = 16/378 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK +FGY FRP Q+ +I+ + +D LV+M TG GKSLC+QLP L+ +VVSPLI+
Sbjct: 11 LKYHFGYDQFRPNQRQIIEAALNDQDLLVIMPTGGGKSLCFQLPALIKKGVTVVVSPLIA 70
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV +L GI A FL S V+ + G +LL++ PE+ ++ SF
Sbjct: 71 LMQDQVTALADNGIGATFLNSTLNAKQVRDRESLILQGKIKLLYVAPER--LLSPSFLDF 128
Query: 122 LL----KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
L G+ AVDEAHC+S+WGHDFR EY+Q+ ++R VP +ALTATAT++VR
Sbjct: 129 LAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTATATQQVRE 188
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGA-GSIIVYCM 236
DII L L++ + IASF+R NL+Y V Q + Q++ + + G GS IVYC+
Sbjct: 189 DIIQQLGLRDASIHIASFNRPNLYYEV------QPKTSKSYQQLYQYIKGKKGSGIVYCI 242
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K V+++++ L++ G+ A YH M + R E FIRD++++MVAT+AFGMGI+KPD
Sbjct: 243 SRKTVDQVAEHLQKDGINALPYHAGMNDQERSENQTRFIRDDVQIMVATIAFGMGINKPD 302
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR V+HY P+ LE YYQESGR GRDG + C L+++ ++ K +++ + +N++
Sbjct: 303 VRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTEQNEQQKA 362
Query: 357 MESLLAAQRYCLLTTCRR 374
+ L Y T CRR
Sbjct: 363 RQQLRQVLDYAEGTECRR 380
>gi|298251484|ref|ZP_06975287.1| ATP-dependent DNA helicase RecQ [Ktedonobacter racemifer DSM 44963]
gi|297546076|gb|EFH79944.1| ATP-dependent DNA helicase RecQ [Ktedonobacter racemifer DSM 44963]
Length = 739
Score = 317 bits (811), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 165/375 (44%), Positives = 236/375 (62%), Gaps = 9/375 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK YFGY F P Q++VI++ + RD +M TG+GKSL YQL L+ ++++SPLI+
Sbjct: 8 LKHYFGYEAFLPGQREVIEQALSGRDAFALMPTGAGKSLIYQLSGLLLNGVSIIISPLIA 67
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIP-ISFWS 120
LMQDQV LK GI A FL SA + S + G +L+++ PE+ ++F
Sbjct: 68 LMQDQVDRLKTNGIPATFLNSALSASERSQREREILQGKLKLVYVAPERLLTQTFLTFLD 127
Query: 121 KLL-KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
++ + G+ L AVDEAHC+SEWGHDFR EY+QL +LR VP +ALTATATE+V+ DI
Sbjct: 128 EVQERVGLGLIAVDEAHCVSEWGHDFRPEYRQLGRLRVRYPQVPAMALTATATERVQEDI 187
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+ LKL +PYV +AS++R NL+Y V+ + Q+ ELVQ L+ + A +I+YC + K
Sbjct: 188 LTQLKLNDPYVEVASYNRPNLYYEVR--QKHQNTYSELVQ-FLREQSDA-PVIIYCQSRK 243
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
+V+ I+ +L+ G++A YH + + R FI D++ V+VAT+AFGMGI KPDVR
Sbjct: 244 NVDTIADSLQHHGIRALPYHAGLSTDERTRNQDSFIHDDVPVLVATIAFGMGIAKPDVRA 303
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIHY PK+LE YYQESGR GRDG+ + C L+Y + K +F + + E++ +
Sbjct: 304 VIHYDMPKSLEGYYQESGRAGRDGLEARCILFYQHGDRMKYEFILAQKEDEHELLKARQQ 363
Query: 360 LLAAQRYCLLTTCRR 374
+ Y T CRR
Sbjct: 364 IQQVITYSESTGCRR 378
>gi|91204323|emb|CAJ71976.1| strongly similar to ATP-dependent DNA helicase [Candidatus Kuenenia
stuttgartiensis]
Length = 772
Score = 317 bits (811), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 167/375 (44%), Positives = 237/375 (63%), Gaps = 10/375 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
S L+KYFGYS F P Q+D+I+ ++E++D V+M TG GKSLCYQLP L+ +V+SPL
Sbjct: 61 SALQKYFGYSKFYPLQEDIIRWVLEQKDLFVLMPTGGGKSLCYQLPALLFDGITVVISPL 120
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIPISFW 119
I+LM+DQV L + GI+A F+ S+ V + G ++L++ PE+ + F
Sbjct: 121 IALMKDQVDGLTENGISATFINSSVHAREVAARKRDLLEGKIKILYIAPERLAMR--EFL 178
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
L + V LFA+DE+HCISEWGHDFR EY+QL LR PF+ALTATAT V+ DI
Sbjct: 179 QFLQELKVSLFAIDESHCISEWGHDFRPEYRQLKMLREKFPKTPFMALTATATPSVQKDI 238
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+ LKL + V ASF+RKNLFY ++I + + L +LK II YC K
Sbjct: 239 VTQLKLTDYKVFNASFNRKNLFY--QIIPKDNPYHQILC--VLKERKKESGII-YCQGRK 293
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
VE ++ +L+ G +A YH + ++ R E FIR++I ++VAT+AFGMGIDKP+VR+
Sbjct: 294 TVESLAGSLQGEGYRALPYHAGLSAEMRTENQERFIREDIEIIVATIAFGMGIDKPNVRY 353
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIHY PK++E YYQE+GR GRDG+ S C L ++ ++ K +++ + + EN++ A +
Sbjct: 354 VIHYDLPKSIEGYYQETGRAGRDGLKSDCILLFSYADKIKIEYFIHQKEDENEKQAAYQQ 413
Query: 360 LLAAQRYCLLTTCRR 374
L A YC CRR
Sbjct: 414 LKALVSYCEGNVCRR 428
>gi|336476813|ref|YP_004615954.1| ATP-dependent DNA helicase RecQ [Methanosalsum zhilinae DSM 4017]
gi|335930194|gb|AEH60735.1| ATP-dependent DNA helicase RecQ [Methanosalsum zhilinae DSM 4017]
Length = 611
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 172/377 (45%), Positives = 230/377 (61%), Gaps = 10/377 (2%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M L+KYFGY+ FRP QK++I I+E +D +M TG GKSLCYQLP L+ +V+S
Sbjct: 1 MQHILQKYFGYNDFRPLQKEIISDILEGKDTFALMPTGGGKSLCYQLPALMMDGVTVVIS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +LK GI AE+L S S ++ E ++L++ PE+ +I
Sbjct: 61 PLISLMKDQVDNLKSNGIAAEYLNSTLGYSQIKQVHEKLIDNRIKILYVAPER--LIMSD 118
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
+S L K V +FAVDEAHCISEWGHDFR EY++L+ L+ VP VALTATA+ KV
Sbjct: 119 TFSYLKKGKVSMFAVDEAHCISEWGHDFRPEYRRLNILKKRFRNVPIVALTATASPKVEK 178
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI+ L L++ ASF+RKNLFY VK + ++ LK G II YC +
Sbjct: 179 DIVKQLSLEDCRTYRASFNRKNLFYHVKT----KKDTYRQLKAYLKKHRGESGII-YCQS 233
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
VE +SK L + G K YH + RE FI+D ++VAT+AFGMGIDKPDV
Sbjct: 234 RSMVETLSKRLNKDGFKTLAYHAGLSDFKREYNQNSFIQDNTDIIVATVAFGMGIDKPDV 293
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHY PK LESYYQE+GR GRDG+ C L+++ ++ K +++ + +T+ +R A +
Sbjct: 294 RFVIHYDLPKNLESYYQETGRGGRDGLPCECVLFFSYADKYKIEYFIEQKKTKEERDAAL 353
Query: 358 ESLLAAQRYCLLTTCRR 374
L YC CRR
Sbjct: 354 MQLRQMINYCESNQCRR 370
>gi|403294330|ref|XP_003938145.1| PREDICTED: Werner syndrome ATP-dependent helicase [Saimiri
boliviensis boliviensis]
Length = 1430
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 167/377 (44%), Positives = 236/377 (62%), Gaps = 6/377 (1%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ LK YFG+S F+P Q VI ++E +RD + VMATG GKSLC+Q PPL GK LV+S
Sbjct: 535 ITCLKTYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPLYVGKIGLVIS 594
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ L+ I A FLGSAQ++ V + G ++++++TPE C +S
Sbjct: 595 PLISLMEDQVLQLRMSNIPACFLGSAQSED-VLGDVKLGKYRIVYITPE-YCSGNLSLLQ 652
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L G+ L AVDEAHCISEWGHDFR +++L L+T L VP VA+TATA+ ++ DI
Sbjct: 653 QLEADIGITLIAVDEAHCISEWGHDFRNSFRKLGSLKTALPLVPIVAVTATASSSIQQDI 712
Query: 180 INSLKLKNPYVTIASFDRKNLFY--GVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
++ L LKNP +T FDR NL+ G K N Q LV++ G I+YC +
Sbjct: 713 VSCLNLKNPQITCTGFDRPNLYLEVGRKTGNILQDLKPFLVRKTNTRWEFEGPTIIYCPS 772
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K E+++ L++L + TYH M R++ H F+RDEI+ ++AT+AFGMGI+K D+
Sbjct: 773 RKMTEQVTAELRKLQLSCETYHAGMSFNKRKDTHHRFLRDEIQCVIATIAFGMGINKADI 832
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHYG PK +ESYYQE GR GRDG+ S C + +A ++ E + E R +
Sbjct: 833 RQVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRCLLAEIRDETFRLYKL 892
Query: 358 ESLLAAQRYCLLTTCRR 374
+ + ++Y + CRR
Sbjct: 893 KMMSKMEKYLHSSRCRR 909
>gi|443668675|ref|ZP_21134223.1| ATP-dependent DNA helicase RecQ [Microcystis aeruginosa DIANCHI905]
gi|159029588|emb|CAO90247.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443330750|gb|ELS45444.1| ATP-dependent DNA helicase RecQ [Microcystis aeruginosa DIANCHI905]
Length = 701
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 162/378 (42%), Positives = 237/378 (62%), Gaps = 16/378 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK +FGY FRP Q+ +I+ + +D LV+M TG GKSLC+QLP L+ +VVSPLI+
Sbjct: 11 LKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVVVSPLIA 70
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV +L GI A FL S V+ + G +LL++ PE+ ++ SF
Sbjct: 71 LMQDQVTALADNGIGATFLNSTLNAKQVRDRESLILQGKIKLLYVAPER--LLSPSFLDF 128
Query: 122 LL----KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
L G+ AVDEAHC+S+WGHDFR EY+Q+ ++R VP +ALTATAT++VR
Sbjct: 129 LAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTATATQQVRE 188
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGA-GSIIVYCM 236
DII L L++ + IASF+R NL+Y V+ +S+ Q++ + + G GS IVYC+
Sbjct: 189 DIIQQLGLRDASIHIASFNRPNLYYEVRA-KTSKSY-----QQLYQYIKGKKGSGIVYCI 242
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K V+++++ L++ G+ A YH M + R E FIRD++++MVAT+AFGMGI+KPD
Sbjct: 243 SRKTVDQVAEHLQKDGINALPYHAGMNDQERSENQTRFIRDDVQIMVATIAFGMGINKPD 302
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR V+HY P+ LE YYQESGR GRDG + C L+++ ++ K +++ + +N++
Sbjct: 303 VRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTEQNEQQKA 362
Query: 357 MESLLAAQRYCLLTTCRR 374
+ L Y T CRR
Sbjct: 363 RQQLRQVLDYAEGTECRR 380
>gi|224026746|ref|ZP_03645112.1| hypothetical protein BACCOPRO_03503 [Bacteroides coprophilus DSM
18228]
gi|224019982|gb|EEF77980.1| hypothetical protein BACCOPRO_03503 [Bacteroides coprophilus DSM
18228]
Length = 608
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 169/377 (44%), Positives = 240/377 (63%), Gaps = 11/377 (2%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ TLK YFGY+ FRP Q+++I I+EKRD LV+M TG GKS+CYQLP L+ TA+VVS
Sbjct: 1 MLKTLKSYFGYTQFRPLQQEIITCILEKRDTLVLMPTGGGKSICYQLPALMMEGTAIVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQ---TDSSVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV SL+ GI A L S+ +++++ + G +LL+++PE+ + ++
Sbjct: 61 PLISLMKDQVESLQANGIIARALNSSNDETVNANLRFECMQGRVKLLYISPER-LLSELN 119
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
F K ++ V LFA+DEAHCIS+WGHDFR EY QL LR VP VALTATA + R
Sbjct: 120 FLLKDIR--VSLFAIDEAHCISQWGHDFRPEYTQLKVLRQQFPNVPIVALTATADKITRQ 177
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI+ L ++NP V I+SFDR NL VK + + + ++Q I + +G I+YCM+
Sbjct: 178 DIVQQLAMRNPQVFISSFDRPNLSLEVKRGYQQKEKIRSILQFIDRHPGESG--IIYCMS 235
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
E++++ L+ G+ YH + + AR+ A FI D ++++ AT+AFGMGIDK +V
Sbjct: 236 RNTTEKVAEMLEDHGLHVAVYHAGLSTAARDAAQDDFINDRVQIVCATIAFGMGIDKSNV 295
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHY PK++ES+YQE GR GRDG+ S L+Y+ + + ES NQ+ +
Sbjct: 296 RWVIHYNLPKSIESFYQEIGRAGRDGLPSDTLLFYSFGDIVLLSKFAAES---NQQEINL 352
Query: 358 ESLLAAQRYCLLTTCRR 374
E L Q+Y CRR
Sbjct: 353 EKLNRMQQYAETDICRR 369
>gi|425433706|ref|ZP_18814184.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9432]
gi|389675683|emb|CCH95185.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9432]
Length = 701
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 162/378 (42%), Positives = 235/378 (62%), Gaps = 16/378 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK +FGY FRP Q+ +I+ + +D LV+M TG GKSLC+QLP L+ +VVSPLI+
Sbjct: 11 LKYHFGYDQFRPNQRQIIEAALNDQDLLVIMPTGGGKSLCFQLPALIKKGVTVVVSPLIA 70
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV +L GI A FL S V+ + G +LL++ PE+ ++ SF
Sbjct: 71 LMQDQVTALADNGIGATFLNSTLNAKQVRDRESLILQGKIKLLYVAPER--LLSPSFLDF 128
Query: 122 LL----KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
L G+ AVDEAHC+S+WGHDFR EY+Q+ ++R VP +ALTATAT++VR
Sbjct: 129 LAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTATATQQVRE 188
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGA-GSIIVYCM 236
DII L L++ + IASF+R NL+Y V Q + Q++ + + G GS IVYC+
Sbjct: 189 DIIQQLGLRDASIHIASFNRPNLYYEV------QPKTSKSYQQLYQYIKGKKGSGIVYCI 242
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K V+++++ L++ G+ A YH M + R E FIRD++++MVAT+AFGMGI+KPD
Sbjct: 243 SRKTVDQVAEHLQKDGINALPYHAGMNDQERSENQTRFIRDDVQIMVATIAFGMGINKPD 302
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR V+HY P+ LE YYQESGR GRDG + C L+++ ++ K +++ + +N++
Sbjct: 303 VRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTEQNEQQKA 362
Query: 357 MESLLAAQRYCLLTTCRR 374
+ L Y T CRR
Sbjct: 363 RQQLRQVLDYAEGTECRR 380
>gi|189462633|ref|ZP_03011418.1| hypothetical protein BACCOP_03325 [Bacteroides coprocola DSM 17136]
gi|189430794|gb|EDU99778.1| ATP-dependent DNA helicase RecQ [Bacteroides coprocola DSM 17136]
Length = 607
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 169/377 (44%), Positives = 239/377 (63%), Gaps = 11/377 (2%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ TLK YFGY+ FRP Q+++I +I+ K+D LV+M TG GKS+CYQLP L+ TA+VVS
Sbjct: 2 ILKTLKSYFGYTQFRPLQEEIITQILHKKDTLVLMPTGGGKSICYQLPALLMEGTAIVVS 61
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQ---TDSSVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV SL+ GI A L S TD++++ + G +LL+++PE+ + ++
Sbjct: 62 PLISLMKDQVESLQANGIIARALNSTNDETTDANIRFECRQGRVKLLYISPER-LMGEVN 120
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
F K ++ + LFA+DEAHCIS+WGHDFR EY QL LR VP VALTATA + R
Sbjct: 121 FLMKDIR--ISLFAIDEAHCISQWGHDFRPEYTQLKILRQQFPDVPVVALTATADKITRQ 178
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DII L +K+P + I+SFDR NL VK + + + + I + +G I+YCM+
Sbjct: 179 DIIRQLAMKDPQIFISSFDRPNLSLDVKRGFQQKEKMRTIFDFIARHRGESG--IIYCMS 236
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
E++++ L++ G+ YH + + ARE A FI D ++V+ AT+AFGMGIDK +V
Sbjct: 237 RSKTEKVAEMLEEHGIATAVYHAGLSTAAREAAQDDFINDRVQVVCATIAFGMGIDKSNV 296
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHY PK++ES+YQE GR GRDG+ S L+Y+ + + ES NQ+ M
Sbjct: 297 RWVIHYNLPKSIESFYQEIGRAGRDGLPSDTLLFYSFGDIVLLSKFAAES---NQQEINM 353
Query: 358 ESLLAAQRYCLLTTCRR 374
E L Q+Y CRR
Sbjct: 354 EKLNRMQQYAETDICRR 370
>gi|426359284|ref|XP_004046910.1| PREDICTED: LOW QUALITY PROTEIN: Werner syndrome ATP-dependent
helicase [Gorilla gorilla gorilla]
Length = 1429
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 165/378 (43%), Positives = 240/378 (63%), Gaps = 9/378 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
V+ LK YFG+S F+ Q VI ++E +RD + VMATG GKSLC+Q PP+ GK LV+S
Sbjct: 534 VTCLKMYFGHSSFKSVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVIS 593
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ LK I A FLGSAQ+++ V T + G ++++++TPE C +
Sbjct: 594 PLISLMEDQVLQLKMSNIPACFLGSAQSEN-VLTDIKLGKYRIVYVTPE-YCSGNMGLLQ 651
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L G+ L AVDEAHCISEWGHDFR +++L L+T L VP VALTATA+ +R DI
Sbjct: 652 QLEADIGITLIAVDEAHCISEWGHDFRNSFRKLGSLKTALPMVPIVALTATASSSIREDI 711
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG---AGSIIVYCM 236
+ L L+NP +T FDR NL+ V+ + + + +L ++K+ + G I+YC
Sbjct: 712 VRCLNLRNPQITCTGFDRPNLYLEVR--RKTGNILQDLQPFLVKTSSHWEFEGPTIIYCP 769
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K ++++ L++L + GTYH M R++ H F+RDEI+ ++AT+AFGMGI+K D
Sbjct: 770 SRKMTQQVTGELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQCVIATIAFGMGINKAD 829
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
+R VIHYG PK +ESYYQE GR GRDG+ S C + +A ++ E + E R
Sbjct: 830 IRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEIRNEKFRLYK 889
Query: 357 MESLLAAQRYCLLTTCRR 374
++ + ++Y + CRR
Sbjct: 890 LKMMAKMEKYLHSSRCRR 907
>gi|427733629|ref|YP_007053173.1| ATP-dependent DNA helicase RecQ [Rivularia sp. PCC 7116]
gi|427368670|gb|AFY52626.1| ATP-dependent DNA helicase RecQ [Rivularia sp. PCC 7116]
Length = 719
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 170/381 (44%), Positives = 234/381 (61%), Gaps = 18/381 (4%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ LK +FGY FR Q+++I +E RD LV+M TG GKSLC+QLP L+ +VVSPL
Sbjct: 9 NALKHHFGYDSFRSPQREIIVEALENRDLLVIMPTGGGKSLCFQLPALMKEGLTVVVSPL 68
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIPISFW 119
I+LMQDQV L++ GI A FL S+ + V+ + + G +LL++ PE+ ++ F
Sbjct: 69 IALMQDQVDGLRKNGIPATFLNSSVSPHKVRMREQAILAGKVKLLYVAPER--LLSERFL 126
Query: 120 SKL----LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
L + G+ FA+DEAHC+SEWGHDFR EY+Q+ LR VP ALTATATE+V
Sbjct: 127 PLLDLVHHQIGISAFAIDEAHCVSEWGHDFRPEYRQMISLRQRYPNVPIWALTATATERV 186
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVD--ELVQEILKSVAGAGSIIV 233
R+DII L LK P V IASF+R+NL+Y V+ + S+V+ L+Q+ GS I+
Sbjct: 187 RLDIIKQLGLKQPNVHIASFNRQNLYYEVRP-KKKNSYVELLGLIQD------NEGSGII 239
Query: 234 YCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGID 293
YC+T K VEE++ L+ + A YH + R E FIRD+ R++VAT+AFGMGI+
Sbjct: 240 YCLTRKKVEELAFKLQHDKISALPYHAGLSDVERSENQTKFIRDDARIIVATIAFGMGIN 299
Query: 294 KPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQR 353
KPDVR V+HY + LESYYQESGR GRDG +S C L+ + S+ ++ + E ++
Sbjct: 300 KPDVRFVVHYDISRNLESYYQESGRAGRDGESSRCMLFLSYSDVKTIEWLIDQKSNEQEQ 359
Query: 354 TAIMESLLAAQRYCLLTTCRR 374
L Y T CRR
Sbjct: 360 MIAKHQLRQMIDYAEGTDCRR 380
>gi|425461242|ref|ZP_18840722.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9808]
gi|389825935|emb|CCI23927.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9808]
Length = 701
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 162/378 (42%), Positives = 237/378 (62%), Gaps = 16/378 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK +FGY FRP Q+ +I+ + +D LV+M TG GKSLC+QLP L+ +VVSPLI+
Sbjct: 11 LKYHFGYDQFRPNQRQIIEAALNDQDLLVIMPTGGGKSLCFQLPALIKKGVTVVVSPLIA 70
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV +L GI A FL S V+ + G +LL++ PE+ ++ SF
Sbjct: 71 LMQDQVTALADNGIGATFLNSTLNAKQVRDRESLILQGKIKLLYVAPER--LLSPSFLDF 128
Query: 122 LL----KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
L G+ AVDEAHC+S+WGHDFR EY+Q+ ++R VP +ALTATAT++VR
Sbjct: 129 LAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTATATQQVRE 188
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGA-GSIIVYCM 236
DII L L++ + IASF+R NL+Y V+ +S+ Q++ + + G GS IVYC+
Sbjct: 189 DIIQQLGLRDASIHIASFNRPNLYYEVRA-KTSKSY-----QQLYQYIKGKKGSGIVYCI 242
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K V+++++ L++ G+ A YH M + R E FIRD++++MVAT+AFGMGI+KPD
Sbjct: 243 SRKTVDQVAEHLQKDGINALPYHAGMNDQERSENQTRFIRDDVQIMVATIAFGMGINKPD 302
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR V+HY P+ LE YYQESGR GRDG + C L+++ ++ K +++ + +N++
Sbjct: 303 VRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTEQNEQQKA 362
Query: 357 MESLLAAQRYCLLTTCRR 374
+ L Y T CRR
Sbjct: 363 RQQLRQVLDYAEGTECRR 380
>gi|425444700|ref|ZP_18824746.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9443]
gi|425454418|ref|ZP_18834158.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9807]
gi|389735511|emb|CCI01005.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9443]
gi|389804921|emb|CCI15689.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9807]
Length = 703
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 162/378 (42%), Positives = 235/378 (62%), Gaps = 16/378 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK +FGY FRP Q+ +I+ + +D LV+M TG GKSLC+QLP L+ +VVSPLI+
Sbjct: 11 LKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVVVSPLIA 70
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV +L GI A FL S V+ + G +LL++ PE+ ++ SF
Sbjct: 71 LMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGKIKLLYVAPER--LLSPSFLDF 128
Query: 122 LL----KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
L G+ AVDEAHC+S+WGHDFR EY+Q+ ++R VP +ALTATAT++VR
Sbjct: 129 LAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTATATQQVRE 188
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG-AGSIIVYCM 236
DII L L++ + IASF+R NL+Y V Q + Q++ + + G GS IVYC+
Sbjct: 189 DIIQQLGLRDTSIHIASFNRPNLYYEV------QPKTSKSYQQLYQYIKGQKGSGIVYCI 242
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K V+++++ L++ G+ A YH M + R E FIRD++++MVAT+AFGMGI+KPD
Sbjct: 243 SRKTVDKVAEQLQKDGIDALPYHAGMDDRERSENQTRFIRDDVQIMVATIAFGMGINKPD 302
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR V+HY P+ LE YYQESGR GRDG + C L+++ ++ K +++ + +N++
Sbjct: 303 VRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTEQNEQQKA 362
Query: 357 MESLLAAQRYCLLTTCRR 374
+ L Y T CRR
Sbjct: 363 RQQLRQVLDYAEGTECRR 380
>gi|196003676|ref|XP_002111705.1| hypothetical protein TRIADDRAFT_56013 [Trichoplax adhaerens]
gi|190585604|gb|EDV25672.1| hypothetical protein TRIADDRAFT_56013 [Trichoplax adhaerens]
Length = 1020
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 174/397 (43%), Positives = 232/397 (58%), Gaps = 30/397 (7%)
Query: 5 LKKYFGYSVFRPYQKDVIQRII-EKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
LK FG++ FRP Q +I I+ RD VVMATG GKSLCYQ P + K +V+SPLI
Sbjct: 173 LKDSFGHAQFRPLQWKIINSIVTHNRDNCVVMATGYGKSLCYQYPAVYLKKIVIVISPLI 232
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTD-SSVQTKAETGYFQLLFMTPEKACIIPISFWSKL 122
SLMQDQVM+L I A +LGSAQ + + V + G + LL++ PE A F
Sbjct: 233 SLMQDQVMALTVNNIPACYLGSAQRNGAEVTRNLKRGRYYLLYVAPEFAVTSGSLFKELN 292
Query: 123 LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINS 182
G+ L A+DEAHC+S+WGHDFR Y+QLD +R L VP +ALTATAT VR DI +
Sbjct: 293 DTIGISLVAIDEAHCVSQWGHDFRSSYRQLDFIRNLLPHVPIMALTATATPLVRADICTA 352
Query: 183 LKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG------AGSIIVYCM 236
LKL +P ++ SFDR NL++ V++ + +L + K GS I+YC+
Sbjct: 353 LKLSDPLISSTSFDRPNLYFEVRI---KSDLMKDLKPYMRKREEKKLFYEFEGSTIIYCI 409
Query: 237 TIKDVEEI------SKALKQ-------------LGVKAGTYHGQMGSKAREEAHRLFIRD 277
+ KD E + S LKQ G+K G YH MG + R+ H FIRD
Sbjct: 410 SRKDSEMVASKLQGSNILKQRSLINVRMTDLVTFGIKCGYYHAGMGLQDRQRIHHEFIRD 469
Query: 278 EIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNF 337
E++ +VAT+AFGMGIDKPDVR +IHYG P+ +ESYYQE GR GRDG+ VC +++A ++F
Sbjct: 470 ELQCVVATIAFGMGIDKPDVRRIIHYGAPRDIESYYQEVGRAGRDGLPGVCVVFFAEADF 529
Query: 338 AKGDFYCGESQTENQRTAIMESLLAAQRYCLLTTCRR 374
+ GE E+ R +E + Y + CRR
Sbjct: 530 RLHKHFIGEIADEDFRKHKLEMMNKLLTYLITKDCRR 566
>gi|307152715|ref|YP_003888099.1| RecQ family ATP-dependent DNA helicase [Cyanothece sp. PCC 7822]
gi|306982943|gb|ADN14824.1| ATP-dependent DNA helicase, RecQ family [Cyanothece sp. PCC 7822]
Length = 717
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 169/379 (44%), Positives = 238/379 (62%), Gaps = 10/379 (2%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ + LK+YFGY FRP Q+ +I+ ++ RD LV+M TG GKSLC+QLP L+ +VVS
Sbjct: 16 LETALKQYFGYDNFRPGQRQIIEEALQNRDLLVIMPTGGGKSLCFQLPALLKPGLTVVVS 75
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIPIS 117
PLISLMQDQV +L GI A FL S+ S ++++ +LL++ PE+ +
Sbjct: 76 PLISLMQDQVDALLDNGIGATFLNSSLGLSEIRSREMAILKNKIKLLYVAPERLLSEKFT 135
Query: 118 -FWSKL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
F K+ L G+ FA+DEAHC+SEWGHDFR EY+QL +LR VP LTATAT++V
Sbjct: 136 PFLDKIALDVGISAFAIDEAHCVSEWGHDFRPEYRQLRQLRQRYPSVPMFGLTATATKRV 195
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYC 235
+ DII L LKNP V IASF+R NL+Y V+ + Q D+L++ I ++ G+G IVYC
Sbjct: 196 QEDIIVQLGLKNPGVHIASFNRPNLYYDVRP--KQQRSYDQLLKYI-RTQKGSG--IVYC 250
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
++ ++V+EI+ L++ G+ A YH M +AR FIRD+ +VMVAT+AFGMGI+K
Sbjct: 251 LSRRNVDEIAFRLQKDGISALPYHAGMTDEARTLNQTRFIRDDAQVMVATIAFGMGINKL 310
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTA 355
DVR V+H+ P+ LESYYQESGR GRDG + C ++ + K ++ + ++
Sbjct: 311 DVRFVVHFDLPRNLESYYQESGRAGRDGEPAKCTIFLGFGDLKKIEYIIEQKSNPQEKKI 370
Query: 356 IMESLLAAQRYCLLTTCRR 374
+ L Y T CRR
Sbjct: 371 AQQQLRQVINYAEGTECRR 389
>gi|3851581|gb|AAC72359.1| Wrn protein [Mus musculus]
Length = 988
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 167/377 (44%), Positives = 238/377 (63%), Gaps = 6/377 (1%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ LK YFG+S F+P Q VI ++E +RD +VVMATG GKSLC+Q PP+ TGK +V+S
Sbjct: 501 INCLKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVIS 560
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ L+ + A LGSAQ+ ++ + G ++++++TPE C +
Sbjct: 561 PLISLMEDQVLQLELSNVPACLLGSAQS-KNILGDVKLGKYRVIYITPE-FCSGNLDLLQ 618
Query: 121 KLLKA-GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
KL + G+ L AVDEAHCISEWGHDFR ++ L L+T L VP +AL+ATA+ +R DI
Sbjct: 619 KLDSSIGITLIAVDEAHCISEWGHDFRSSFRMLGSLKTALPLVPVIALSATASSSIREDI 678
Query: 180 INSLKLKNPYVTIASFDRKNLFY--GVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
I+ L LK+P +T FDR NL+ G K N Q LV++ + G I+YC +
Sbjct: 679 ISCLNLKDPQITCTGFDRPNLYLEVGRKTGNILQDLKPFLVRKASSAWEFEGPTIIYCPS 738
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K E+++ L +L + TYH M R++ H F+RDEI+ +VAT+AFGMGI+K D+
Sbjct: 739 RKMTEQVTAELGKLNLACRTYHAGMKISERKDVHHRFLRDEIQCVVATVAFGMGINKADI 798
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHYG PK +ESYYQE GR GRDG+ S C L +A ++F + E E R +
Sbjct: 799 RKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNTSRNHLIEIHDEKFRLYKL 858
Query: 358 ESLLAAQRYCLLTTCRR 374
+ ++ ++Y + CRR
Sbjct: 859 KMMVKMEKYLHSSQCRR 875
>gi|428310069|ref|YP_007121046.1| ATP-dependent DNA helicase RecQ [Microcoleus sp. PCC 7113]
gi|428251681|gb|AFZ17640.1| ATP-dependent DNA helicase RecQ [Microcoleus sp. PCC 7113]
Length = 757
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 167/377 (44%), Positives = 238/377 (63%), Gaps = 14/377 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK +FGY FRP Q+ +++ + +RD LV+M TG GKSLC+QLP L+ +VVSPLI+
Sbjct: 59 LKHFFGYDAFRPGQRQIVEEALAQRDLLVIMPTGGGKSLCFQLPALLKPGLTVVVSPLIA 118
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKAC---IIPISF 118
LMQDQV +L GI A FL S + V+++ G +LL++ PE+ +P F
Sbjct: 119 LMQDQVDALVDNGIGATFLNSTLSWDDVRSRELAILNGKIKLLYVAPERLLGEKFLP--F 176
Query: 119 WSKL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
K+ + G+ FA+DEAHC+SEWGHDFR EY+Q+ +LR +P +ALTATAT++V+
Sbjct: 177 LEKVRAQIGISAFAIDEAHCVSEWGHDFRPEYRQMKQLRQRYPDIPILALTATATKRVQQ 236
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI+ L L+ P + IASF+R NL+Y V+ R S+ ++L+++I KS G+G IVYC++
Sbjct: 237 DILEQLTLRQPGIHIASFNRPNLYYEVQPKER-HSY-NQLLKKI-KSHKGSG--IVYCLS 291
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
+ V+E++ L++ G+ A YH M +AR FIRD+++VMVAT+AFGMGI+KPDV
Sbjct: 292 RRAVDEVAFRLQKDGIDALPYHAGMSDEARATNQTRFIRDDVQVMVATIAFGMGINKPDV 351
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHY P LE YYQESGR GRDG + C L++ N D+ + ++
Sbjct: 352 RFVIHYDLPHNLERYYQESGRAGRDGEPAHCTLFFGAGNIRTIDYLIEQKPDPKEQRVAR 411
Query: 358 ESLLAAQRYCLLTTCRR 374
+ L Y T CRR
Sbjct: 412 QQLRQVIDYAEGTDCRR 428
>gi|2130973|dbj|BAA20269.1| WRN typeI [Mus musculus]
gi|2130975|dbj|BAA20270.1| WRN typeII [Mus musculus]
Length = 1401
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 167/377 (44%), Positives = 237/377 (62%), Gaps = 6/377 (1%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ LK YFG+S F+P Q VI ++E +RD +VVMATG GKSLC+Q PP+ TGK +V+S
Sbjct: 501 INCLKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVIS 560
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ L+ + A LGSAQ+ ++ + G ++++++TPE C +
Sbjct: 561 PLISLMEDQVLQLELSNVPACLLGSAQS-KNILGDVKLGKYRVIYITPE-FCSGNLDLLQ 618
Query: 121 KLLKA-GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
KL + G+ L AVDEAHCISEWGHDFR ++ L L+T L VP +AL+ATA+ +R DI
Sbjct: 619 KLDSSIGITLIAVDEAHCISEWGHDFRSSFRMLGSLKTALPLVPVIALSATASSSIREDI 678
Query: 180 INSLKLKNPYVTIASFDRKNLFY--GVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
I+ L LK+P +T FDR NL+ G K N Q LV++ + G I+YC +
Sbjct: 679 ISCLNLKDPQITCTGFDRPNLYLEVGRKTGNILQDLKPFLVRKASSAWEFEGPTIIYCPS 738
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K E+++ L +L + TYH M R++ H F+RDEI+ +VAT+AFGMGI+K D+
Sbjct: 739 RKMTEQVTAELGKLNLACRTYHAGMKISERKDVHHRFLRDEIQCVVATVAFGMGINKADI 798
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHYG PK +ESYYQE GR GRDG+ S C L +A ++F E E R +
Sbjct: 799 RQVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNTSRNLLIEIHDEKFRLYKL 858
Query: 358 ESLLAAQRYCLLTTCRR 374
+ ++ ++Y + CRR
Sbjct: 859 KMMVKMEKYLHSSQCRR 875
>gi|355697852|gb|EHH28400.1| Werner syndrome ATP-dependent helicase [Macaca mulatta]
Length = 1431
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 165/378 (43%), Positives = 236/378 (62%), Gaps = 9/378 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
V+ LK YFG+S F+P Q VI ++E +RD + VMATG GKSLC+Q PP+ GK LV+S
Sbjct: 536 VTCLKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVIS 595
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ LK I FLGSAQ+++ V T + G ++++++TPE C I
Sbjct: 596 PLISLMEDQVLQLKMSNIPTCFLGSAQSEN-VLTDIKLGKYRIVYITPE-YCSGNIGLLQ 653
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L G+ L AVDEAHCISEWGHDFR +++L L+T L VP VALTATAT +R DI
Sbjct: 654 QLEADIGITLIAVDEAHCISEWGHDFRNSFRKLGSLKTALPMVPIVALTATATSSIREDI 713
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG---AGSIIVYCM 236
+ L L+NP + FDR NL+ V+ + + + +L ++K+ + G I+YC
Sbjct: 714 VRCLNLRNPQIICTGFDRPNLYLEVR--RKTGNILQDLQPFLVKTTSHWEFEGPTIIYCP 771
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K E+++ L++L + TYH M R++ H F+RDEI+ ++AT+AFGMGI+K D
Sbjct: 772 SRKMTEQVTAELRKLNLSCETYHAGMSFSRRKDVHHRFVRDEIQCVIATIAFGMGINKAD 831
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
+R VIHYG PK +ESYYQE GR GRDG+ S C + +A ++ E R
Sbjct: 832 IRQVIHYGAPKEMESYYQEIGRAGRDGLQSSCHILWAPADINLNXXXXXXXXXEKFRLYK 891
Query: 357 MESLLAAQRYCLLTTCRR 374
++ + ++Y + CRR
Sbjct: 892 LKMMAKMEKYLHSSRCRR 909
>gi|148703462|gb|EDL35409.1| Werner syndrome homolog (human) [Mus musculus]
Length = 1385
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 167/377 (44%), Positives = 237/377 (62%), Gaps = 6/377 (1%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ LK YFG+S F+P Q VI ++E +RD +VVMATG GKSLC+Q PP+ TGK +V+S
Sbjct: 501 INCLKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVIS 560
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ L+ + A LGSAQ+ ++ + G ++++++TPE C +
Sbjct: 561 PLISLMEDQVLQLELSNVPACLLGSAQS-KNILGDVKLGKYRVIYITPE-FCSGNLDLLQ 618
Query: 121 KLLKA-GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
KL + G+ L AVDEAHCISEWGHDFR ++ L L+T L VP +AL+ATA+ +R DI
Sbjct: 619 KLDSSIGITLIAVDEAHCISEWGHDFRSSFRMLGSLKTALPLVPVIALSATASSSIREDI 678
Query: 180 INSLKLKNPYVTIASFDRKNLFY--GVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
I+ L LK+P +T FDR NL+ G K N Q LV++ + G I+YC +
Sbjct: 679 ISCLNLKDPQITCTGFDRPNLYLEVGRKTGNILQDLKPFLVRKASSAWEFEGPTIIYCPS 738
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K E+++ L +L + TYH M R++ H F+RDEI+ +VAT+AFGMGI+K D+
Sbjct: 739 RKMTEQVTAELGKLNLACRTYHAGMKISERKDVHHRFLRDEIQCVVATVAFGMGINKADI 798
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHYG PK +ESYYQE GR GRDG+ S C L +A ++F E E R +
Sbjct: 799 RKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNTSRNLLIEIHDEKFRLYKL 858
Query: 358 ESLLAAQRYCLLTTCRR 374
+ ++ ++Y + CRR
Sbjct: 859 KMMVKMEKYLHSSQCRR 875
>gi|150004558|ref|YP_001299302.1| ATP-dependent DNA helicase [Bacteroides vulgatus ATCC 8482]
gi|294776076|ref|ZP_06741571.1| ATP-dependent DNA helicase RecQ [Bacteroides vulgatus PC510]
gi|423312434|ref|ZP_17290371.1| ATP-dependent DNA helicase RecQ [Bacteroides vulgatus CL09T03C04]
gi|149932982|gb|ABR39680.1| putative ATP-dependent DNA helicase [Bacteroides vulgatus ATCC
8482]
gi|294450068|gb|EFG18573.1| ATP-dependent DNA helicase RecQ [Bacteroides vulgatus PC510]
gi|392688918|gb|EIY82202.1| ATP-dependent DNA helicase RecQ [Bacteroides vulgatus CL09T03C04]
Length = 605
Score = 315 bits (806), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 170/377 (45%), Positives = 237/377 (62%), Gaps = 11/377 (2%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M TLK YFGY FRP Q+D+IQ I+ ++D LV+M TG GKS+CYQLP L+ TA+VVS
Sbjct: 1 MFQTLKNYFGYDSFRPLQQDIIQNILAQKDTLVLMPTGGGKSICYQLPALLMEGTAIVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS-SVQTKAE--TGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV SL+ GI A L S+ ++ ++ + E G +LL+++PE+ +I +
Sbjct: 61 PLISLMKDQVESLQANGIAARALNSSNNETENINLRRECLQGKIKLLYISPER-LLIETN 119
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
F K ++ + LFA+DEAHCIS+WGHDFR EY QL LR VP VALTATA + R
Sbjct: 120 FLLKDIQ--ISLFAIDEAHCISQWGHDFRPEYTQLKVLRNQFPKVPIVALTATADKITRK 177
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI+ L LK+P + I+SFDR NL VK + + + +++ I K G I+YCM+
Sbjct: 178 DIVQQLALKDPKIFISSFDRPNLSLEVKRGYQQKDKMRTILEFIEKHKNECG--IIYCMS 235
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
E ++ L + G++A YH + S R++A FI D ++V+ AT+AFGMGIDK +V
Sbjct: 236 RSKTENVAAMLMKQGIRATVYHAGLSSDMRDKAQNDFINDRVQVVCATIAFGMGIDKSNV 295
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHY PK++ES+YQE GR GRDG+ S L+Y+ + + ES +Q+ +
Sbjct: 296 RWVIHYNLPKSIESFYQEIGRAGRDGMESDTLLFYSLGDLVMLSKFATES---SQQEINL 352
Query: 358 ESLLAAQRYCLLTTCRR 374
E L Q+Y CRR
Sbjct: 353 EKLHRMQQYAESDICRR 369
>gi|407261615|ref|XP_003946318.1| PREDICTED: Werner syndrome ATP-dependent helicase homolog [Mus
musculus]
Length = 1434
Score = 315 bits (806), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 167/377 (44%), Positives = 237/377 (62%), Gaps = 6/377 (1%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ LK YFG+S F+P Q VI ++E +RD +VVMATG GKSLC+Q PP+ TGK +V+S
Sbjct: 568 INCLKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVIS 627
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ L+ + A LGSAQ+ ++ + G ++++++TPE C +
Sbjct: 628 PLISLMEDQVLQLELSNVPACLLGSAQS-KNILGDVKLGKYRVIYITPE-FCSGNLDLLQ 685
Query: 121 KLLKA-GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
KL + G+ L AVDEAHCISEWGHDFR ++ L L+T L VP +AL+ATA+ +R DI
Sbjct: 686 KLDSSIGITLIAVDEAHCISEWGHDFRSSFRMLGSLKTALPLVPVIALSATASSSIREDI 745
Query: 180 INSLKLKNPYVTIASFDRKNLFY--GVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
I+ L LK+P +T FDR NL+ G K N Q LV++ + G I+YC +
Sbjct: 746 ISCLNLKDPQITCTGFDRPNLYLEVGRKTGNILQDLKPFLVRKASSAWEFEGPTIIYCPS 805
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K E+++ L +L + TYH M R++ H F+RDEI+ +VAT+AFGMGI+K D+
Sbjct: 806 RKMTEQVTAELGKLNLACRTYHAGMKISERKDVHHRFLRDEIQCVVATVAFGMGINKADI 865
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHYG PK +ESYYQE GR GRDG+ S C L +A ++F E E R +
Sbjct: 866 RKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNTSRNLLIEIHDEKFRLYKL 925
Query: 358 ESLLAAQRYCLLTTCRR 374
+ ++ ++Y + CRR
Sbjct: 926 KMMVKMEKYLHSSQCRR 942
>gi|7595900|gb|AAF64490.1|AF241636_1 WRN protein [Mus musculus]
Length = 1401
Score = 315 bits (806), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 167/377 (44%), Positives = 237/377 (62%), Gaps = 6/377 (1%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ LK YFG+S F+P Q VI ++E +RD +VVMATG GKSLC+Q PP+ TGK +V+S
Sbjct: 501 INCLKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVIS 560
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ L+ + A LGSAQ+ ++ + G ++++++TPE C +
Sbjct: 561 PLISLMEDQVLQLELSNVPACLLGSAQS-KNILGDVKLGKYRVIYITPE-FCSGNLDLLQ 618
Query: 121 KLLKA-GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
KL + G+ L AVDEAHCISEWGHDFR ++ L L+T L VP +AL+ATA+ +R DI
Sbjct: 619 KLDSSIGITLIAVDEAHCISEWGHDFRSSFRMLGSLKTALPLVPVIALSATASSSIREDI 678
Query: 180 INSLKLKNPYVTIASFDRKNLFY--GVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
I+ L LK+P +T FDR NL+ G K N Q LV++ + G I+YC +
Sbjct: 679 ISCLNLKDPQITCTGFDRPNLYLEVGRKTGNILQDLKPFLVRKASSAWEFEGPTIIYCPS 738
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K E+++ L +L + TYH M R++ H F+RDEI+ +VAT+AFGMGI+K D+
Sbjct: 739 RKMTEQVTAELGKLNLACRTYHAGMKISERKDVHHRFLRDEIQCVVATVAFGMGINKADI 798
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHYG PK +ESYYQE GR GRDG+ S C L +A ++F E E R +
Sbjct: 799 RKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNTSRNLLIEIHDEKFRLYKL 858
Query: 358 ESLLAAQRYCLLTTCRR 374
+ ++ ++Y + CRR
Sbjct: 859 KMMVKMEKYLHSSQCRR 875
>gi|425470694|ref|ZP_18849554.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9701]
gi|389883511|emb|CCI36062.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9701]
Length = 701
Score = 315 bits (806), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 161/379 (42%), Positives = 235/379 (62%), Gaps = 16/379 (4%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
LK +FGY FRP Q+ +I+ + +D LV+M TG GKSLC+QLP L+ +VVSPLI
Sbjct: 10 ALKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVVVSPLI 69
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFWS 120
+LMQDQV +L GI A FL S V+ + G +LL++ PE+ ++ SF
Sbjct: 70 ALMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGKIKLLYVAPER--LLSPSFLD 127
Query: 121 KLL----KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
L G+ AVDEAHC+S+WGHDFR EY+Q+ ++R VP +ALTATAT++VR
Sbjct: 128 FLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTATATQQVR 187
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG-AGSIIVYC 235
DII L L++ + IASF+R NL+Y V Q + Q++ + + G GS IVYC
Sbjct: 188 EDIIQQLGLRDTSIHIASFNRPNLYYEV------QPKTSKSYQQLYQYIKGQKGSGIVYC 241
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
++ K V+++++ L++ G+ A YH M + R + FIRD++++MVAT+AFGMGI+KP
Sbjct: 242 ISRKTVDQVAEQLQKDGINALPYHAGMEDRERSQNQTRFIRDDVQIMVATIAFGMGINKP 301
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTA 355
DVR V+HY P+ LE YYQESGR GRDG + C L+++ ++ K +++ + +N++
Sbjct: 302 DVRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTEQNEQQK 361
Query: 356 IMESLLAAQRYCLLTTCRR 374
+ L Y T CRR
Sbjct: 362 ARQQLRQVLDYAEGTECRR 380
>gi|319643550|ref|ZP_07998171.1| ATP-dependent DNA helicase [Bacteroides sp. 3_1_40A]
gi|345518434|ref|ZP_08797885.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 4_3_47FAA]
gi|254835825|gb|EET16134.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 4_3_47FAA]
gi|317384814|gb|EFV65772.1| ATP-dependent DNA helicase [Bacteroides sp. 3_1_40A]
Length = 605
Score = 314 bits (805), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 170/377 (45%), Positives = 237/377 (62%), Gaps = 11/377 (2%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M TLK YFGY FRP Q+D+IQ I+ ++D LV+M TG GKS+CYQLP L+ TA+VVS
Sbjct: 1 MFQTLKNYFGYDSFRPLQQDIIQNILVQKDTLVLMPTGGGKSICYQLPALLMEGTAIVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS-SVQTKAE--TGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV SL+ GI A L S+ ++ ++ + E G +LL+++PE+ +I +
Sbjct: 61 PLISLMKDQVESLQANGIAARALNSSNNETENINLRRECLQGKIKLLYISPER-LLIETN 119
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
F K ++ + LFA+DEAHCIS+WGHDFR EY QL LR VP VALTATA + R
Sbjct: 120 FLLKDIQ--ISLFAIDEAHCISQWGHDFRPEYTQLKVLRNQFPKVPIVALTATADKITRK 177
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI+ L LK+P + I+SFDR NL VK + + + +++ I K G I+YCM+
Sbjct: 178 DIVQQLALKDPKIFISSFDRPNLSLEVKRGYQQKDKMRTILEFIEKHKNECG--IIYCMS 235
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
E ++ L + G++A YH + S R++A FI D ++V+ AT+AFGMGIDK +V
Sbjct: 236 RSKTENVAAMLMKQGIRATVYHAGLSSDMRDKAQNDFINDRVQVVCATIAFGMGIDKSNV 295
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHY PK++ES+YQE GR GRDG+ S L+Y+ + + ES +Q+ +
Sbjct: 296 RWVIHYNLPKSIESFYQEIGRAGRDGMESDTLLFYSLGDLVMLSKFATES---SQQEINL 352
Query: 358 ESLLAAQRYCLLTTCRR 374
E L Q+Y CRR
Sbjct: 353 EKLHRMQQYAESDICRR 369
>gi|333029863|ref|ZP_08457924.1| ATP-dependent DNA helicase RecQ [Bacteroides coprosuis DSM 18011]
gi|332740460|gb|EGJ70942.1| ATP-dependent DNA helicase RecQ [Bacteroides coprosuis DSM 18011]
Length = 605
Score = 314 bits (805), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 174/378 (46%), Positives = 232/378 (61%), Gaps = 13/378 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ TLK FGY FRP Q+++I+ I++K+D LV+M TG GKS+CYQLP L+ +V+S
Sbjct: 6 MLHTLKTKFGYEGFRPLQREIIENILDKKDTLVLMPTGGGKSICYQLPALLLKGITIVIS 65
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L GINA L S +D+ ++ G +LL+++PEK +S
Sbjct: 66 PLISLMKDQVEALLANGINAGALNSNNSDTENELIKQNCRQGKIKLLYISPEKL----LS 121
Query: 118 FWSKLLKA-GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
LLK + LFAVDEAHCIS+WGHDFR EY QL L + VP VALTATA + R
Sbjct: 122 EIDYLLKDIDISLFAVDEAHCISQWGHDFRPEYTQLGILHQYFPSVPMVALTATADKITR 181
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DII LKLKNP + I+SFDR NL V+V Q + + ++ G II YCM
Sbjct: 182 QDIIRQLKLKNPKIFISSFDRPNLSLKVEV-GYQQKDKHKYIYNFIQDRPGEAGII-YCM 239
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K E I + L++ G+ A YH + RE+A FI D ++V+ AT+AFGMGIDK +
Sbjct: 240 SRKKTETICRYLEKKGISATIYHAGLAPNIREKAQDDFINDRVQVVCATIAFGMGIDKSN 299
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY PK++ESYYQE GR GRDG+AS L+Y + + ES+ Q+
Sbjct: 300 VRWVIHYNMPKSIESYYQEIGRAGRDGVASDTVLFYNVGDIILLTKFANESK---QQEIN 356
Query: 357 MESLLAAQRYCLLTTCRR 374
+E L Q+Y + CRR
Sbjct: 357 LEKLDRIQQYAESSICRR 374
>gi|397521446|ref|XP_003830806.1| PREDICTED: Werner syndrome ATP-dependent helicase [Pan paniscus]
Length = 1405
Score = 314 bits (805), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 165/378 (43%), Positives = 239/378 (63%), Gaps = 9/378 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
V+ LK YFG+S F+ Q VI ++E +RD + VMATG GKSLC+Q PP+ GK LV+S
Sbjct: 510 VTCLKMYFGHSSFKLVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVIS 569
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ LK I A FLGSAQ+++ V T + G ++++++TPE C +
Sbjct: 570 PLISLMEDQVLQLKMSNIPACFLGSAQSEN-VLTDIKLGKYRIVYVTPE-YCSGNMGLLQ 627
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L G+ L AVDEAHCISEWGHDFR +++L L+T L VP VALTATA+ +R DI
Sbjct: 628 QLEADIGITLIAVDEAHCISEWGHDFRNSFRKLGSLKTALPMVPIVALTATASSSIREDI 687
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG---AGSIIVYCM 236
+ L L+NP +T FDR NL+ V+ + + + +L ++K+ + G I+YC
Sbjct: 688 VRCLNLRNPQITCTGFDRPNLYLEVR--RKTGNILQDLQPFLVKTSSHWEFEGPTIIYCP 745
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K ++++ L++L + GTYH M R++ H F+RDEI+ ++AT+AFGMGI+K D
Sbjct: 746 SRKMTQQVTGELRKLNLSCGTYHAGMSFNTRKDIHHRFVRDEIQCVIATIAFGMGINKAD 805
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
+R VIHYG PK +ESYYQE GR GRDG+ S C + +A ++ E + E R
Sbjct: 806 IRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEIRNEKFRLYK 865
Query: 357 MESLLAAQRYCLLTTCRR 374
++ ++Y + CRR
Sbjct: 866 LKMTAKMEKYLHSSRCRR 883
>gi|124484849|ref|YP_001029465.1| hypothetical protein Mlab_0020 [Methanocorpusculum labreanum Z]
gi|124362390|gb|ABN06198.1| ATP-dependent DNA helicase, RecQ family [Methanocorpusculum
labreanum Z]
Length = 493
Score = 314 bits (804), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 164/375 (43%), Positives = 230/375 (61%), Gaps = 8/375 (2%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
TL+KYF + FRP Q+++I++I+ RD L VMATG GKSLCYQLP L+ +V+SPLI
Sbjct: 8 TLEKYFHHQTFRPNQQEIIEKIVSGRDVLAVMATGGGKSLCYQLPALMLDGMTIVISPLI 67
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
+LM+DQV SL +G+ E L S QT V+ G ++L+++PE+A + P +F++
Sbjct: 68 ALMKDQVDSLSNQGVTVETLNSLQTYDERRRVEQDMRDGKVRILYVSPERA-VTP-AFFA 125
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L V LFAVDEAHCIS WGH FR EY+++ LR GVP A TATAT +VR DI+
Sbjct: 126 TLSGCKVALFAVDEAHCISMWGHQFRPEYREIKHLRDKFPGVPIAAFTATATLRVREDIV 185
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N L+L +P I SFDR+NL Y V Q + +++ + G I+YC +
Sbjct: 186 NELRLNDPAEFIGSFDRRNLRYSVFAEPNAQVRMQKIISYVTAHKDDPG--IIYCFSRAS 243
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
EE+++ L+++ + A YH + + R F+ + IRV+ AT+AFGMGIDKPDVR+V
Sbjct: 244 TEELAERLRKVHIMANPYHAGLPTPERSRVQEGFLNNSIRVICATVAFGMGIDKPDVRYV 303
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM-ES 359
IH PK +ESYYQE+GR GRDG A C L+Y+ + K + T+ +++ I E
Sbjct: 304 IHAHMPKDIESYYQETGRAGRDGKAGECLLFYSGGDRRKIENMLEREFTDKKKSEIAREK 363
Query: 360 LLAAQRYCLLTTCRR 374
L YC +CRR
Sbjct: 364 LDQMYAYCTAKSCRR 378
>gi|172036703|ref|YP_001803204.1| ATP-requiring DNA helicase [Cyanothece sp. ATCC 51142]
gi|354554517|ref|ZP_08973821.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. ATCC 51472]
gi|171698157|gb|ACB51138.1| ATP-requiring DNA helicase [Cyanothece sp. ATCC 51142]
gi|353553326|gb|EHC22718.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. ATCC 51472]
Length = 711
Score = 314 bits (804), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 168/381 (44%), Positives = 237/381 (62%), Gaps = 14/381 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ + LK +FGY FR QK +I + +D LV+M TG GKSLC+QLP L+ +VVS
Sbjct: 8 LENALKYFFGYDQFRSGQKQIINEALNNKDLLVIMPTGGGKSLCFQLPALLKSGVCIVVS 67
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIPIS 117
PLI+LMQDQV +L GI A FL S +Q++ G +LL++ PE+ ++ +
Sbjct: 68 PLIALMQDQVDTLLDNGIGATFLNSTLNREELQSRENAILKGKIKLLYVAPER--LLNDN 125
Query: 118 FWSKL----LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATE 173
F + L K G+ FA+DEAHC+S WGHDFR EY+QL +LR VP ALTATAT+
Sbjct: 126 FLNFLDFLRQKVGLSGFAIDEAHCVSAWGHDFRPEYRQLKQLRFRYPQVPMFALTATATK 185
Query: 174 KVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIV 233
+VR DII L L+NP V +ASFDR NL+Y V+ +R +S+ L ++S G+G I+
Sbjct: 186 RVRADIIEQLGLQNPTVHVASFDRPNLYYEVQEKSR-RSYTQLL--NYVRSQEGSG--II 240
Query: 234 YCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGID 293
YC++ K+VE I+ L+Q G++A YH M R FIRD++R++VAT+AFGMGI+
Sbjct: 241 YCLSRKNVETIAFRLQQDGIEALPYHAGMYDDERAVNQTRFIRDDVRIIVATIAFGMGIN 300
Query: 294 KPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQR 353
KPDVR V+HY P+ LESYYQESGR GRDG + C L+++ + + ++ + E ++
Sbjct: 301 KPDVRFVVHYDLPRNLESYYQESGRAGRDGEPANCALFFSFGDLKRLEYLIDQKIDEKEQ 360
Query: 354 TAIMESLLAAQRYCLLTTCRR 374
+ + Y T CRR
Sbjct: 361 RVGRQQVRQVVDYAEGTECRR 381
>gi|428307721|ref|YP_007144546.1| ATP-dependent DNA helicase RecQ [Crinalium epipsammum PCC 9333]
gi|428249256|gb|AFZ15036.1| ATP-dependent DNA helicase RecQ [Crinalium epipsammum PCC 9333]
Length = 728
Score = 314 bits (804), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 161/375 (42%), Positives = 234/375 (62%), Gaps = 10/375 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK YFGY FRP Q+ +++ +EKRD L++M TG GKSLC+QLP L+ +VVSPLIS
Sbjct: 11 LKHYFGYDNFRPGQRQIVEEALEKRDLLILMPTGGGKSLCFQLPALLKPGLTVVVSPLIS 70
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV +L GI A FL S + V+++ G ++L++ PE+ + + +
Sbjct: 71 LMQDQVEALLDNGIGATFLNSTVDWADVRSREVGILNGKIKILYVAPERLLTDKFTLFLE 130
Query: 122 LLK--AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
++ G+ FA+DEAHC+S+WGHDFR EY+QL +LR VP ALTATAT +VR DI
Sbjct: 131 QVQRQVGISAFAIDEAHCVSQWGHDFRPEYRQLKQLRQRYRDVPIFALTATATNRVREDI 190
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
I L L+ P + I+SF+R NL+Y V+ + + Q+++ L ++++ G+G IVYC++ +
Sbjct: 191 IQQLALRQPSIHISSFNRPNLYYEVQ-LKQKQAYLQLL--KLIRQYEGSG--IVYCLSRR 245
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+E++ L++ G+ A YH M + R FIRD+++VMVAT+AFGMGI+KPDVR
Sbjct: 246 HVDEVAFRLQKDGISALPYHAGMTDEERAYNQTRFIRDDVQVMVATIAFGMGINKPDVRF 305
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIHY P+ LE YYQESGR GRDG + C L + + ++ + ++ +
Sbjct: 306 VIHYDLPRNLEGYYQESGRAGRDGEPARCTLLFGTGDLRTINYLIEQKSDAQEQRVARQQ 365
Query: 360 LLAAQRYCLLTTCRR 374
L Y T CRR
Sbjct: 366 LQKMIDYAEGTDCRR 380
>gi|390440423|ref|ZP_10228752.1| ATP-dependent DNA helicase recQ [Microcystis sp. T1-4]
gi|389836165|emb|CCI32878.1| ATP-dependent DNA helicase recQ [Microcystis sp. T1-4]
Length = 703
Score = 314 bits (804), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 161/379 (42%), Positives = 234/379 (61%), Gaps = 16/379 (4%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
LK +FGY FRP Q+ +I+ + +D LV+M TG GKSLC+QLP L+ +VVSPLI
Sbjct: 10 ALKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVVVSPLI 69
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFWS 120
+LMQDQV +L GI A FL S V+ + G +LL++ PE+ ++ SF
Sbjct: 70 ALMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGKIKLLYVAPER--LLSPSFLD 127
Query: 121 KLL----KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
L G+ AVDEAHC+S+WGHDFR EY+Q+ ++R VP +ALTATAT++VR
Sbjct: 128 FLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTATATQQVR 187
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG-AGSIIVYC 235
DII L L++ + ASF+R NL+Y V Q + Q++ + + G GS IVYC
Sbjct: 188 EDIIQQLGLRDTSIHTASFNRPNLYYEV------QPKTSKSYQQLYQYIKGQKGSGIVYC 241
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
++ K V+++++ L++ G+ A YH M + R E FIRD++++MVAT+AFGMGI+KP
Sbjct: 242 ISRKTVDKVAEQLQKDGIDALPYHAGMDDRERSENQTRFIRDDVQIMVATIAFGMGINKP 301
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTA 355
DVR V+HY P+ LE YYQESGR GRDG + C L+++ ++ K +++ + +N++
Sbjct: 302 DVRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTEQNEQQK 361
Query: 356 IMESLLAAQRYCLLTTCRR 374
+ L Y T CRR
Sbjct: 362 ARQQLRQVLDYAEGTECRR 380
>gi|428213965|ref|YP_007087109.1| ATP-dependent DNA helicase RecQ [Oscillatoria acuminata PCC 6304]
gi|428002346|gb|AFY83189.1| ATP-dependent DNA helicase RecQ [Oscillatoria acuminata PCC 6304]
Length = 836
Score = 314 bits (804), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 166/382 (43%), Positives = 240/382 (62%), Gaps = 22/382 (5%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
+LK +FG+ FRP Q+++++ ++ RD L+VM TG GKSLC+QLP L+ +VVSPLI
Sbjct: 18 SLKHFFGHDSFRPGQREIVEAALQNRDLLIVMPTGGGKSLCFQLPALLRKGITVVVSPLI 77
Query: 64 SLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
+LMQDQV SLK GI FL S + S +T G +LL++ PE+ +
Sbjct: 78 ALMQDQVESLKNNGIACTFLNSTLSWEESRSRETAILQGEIKLLYVAPERLLSERFLPFM 137
Query: 121 KLLKA--GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
L++A G+ FA+DEAHC+SEWGHDFR EY+Q+ LR +P +ALTATAT++VR D
Sbjct: 138 DLVRAQVGISGFAIDEAHCVSEWGHDFRPEYRQMQLLRQRYPEIPMMALTATATDRVRQD 197
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I L L++P + IASF+R NL+Y V+ N+ QS+ ELV+ I +S GS I+YC++
Sbjct: 198 ITQQLALRDPKIHIASFNRPNLYYEVRQKNK-QSY-RELVKLIRES---KGSGIIYCLSR 252
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
+ V+E++ L++ G+ A YH M + R FIRD+ +V+VAT+AFGMGI+KPDVR
Sbjct: 253 RRVDEVAYKLQREGIDAIPYHAGMNDQERSSNQTRFIRDDAQVIVATIAFGMGINKPDVR 312
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+HY P+ +E YYQESGR GRDG + C +++ + ++ +Q+T + E
Sbjct: 313 FVVHYDLPRNIEGYYQESGRAGRDGEPANCTMFFGYGDIKTIEYII------DQKTDVDE 366
Query: 359 SLLAAQR------YCLLTTCRR 374
+A Q+ Y T CRR
Sbjct: 367 QRIARQQLRQIINYSESTVCRR 388
>gi|313148719|ref|ZP_07810912.1| ATP-dependent DNA helicase [Bacteroides fragilis 3_1_12]
gi|313137486|gb|EFR54846.1| ATP-dependent DNA helicase [Bacteroides fragilis 3_1_12]
Length = 607
Score = 314 bits (804), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 170/378 (44%), Positives = 237/378 (62%), Gaps = 13/378 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ TLK YFGY FRP Q+++I+ ++ KRD LV+M TG GKS+CYQLP L+ TA+V+S
Sbjct: 7 MIQTLKTYFGYDSFRPLQEEIIRNLMSKRDALVLMPTGGGKSICYQLPALLMEGTAIVIS 66
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV SL GI A L S+ +S +++ +G +LL+++PEK +S
Sbjct: 67 PLISLMKDQVESLCANGIPAGALNSSNDESENANLRRACISGKLKLLYISPEKL----LS 122
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
LL+ + LFAVDEAHCIS+WGHDFR EY ++ LRT VP +ALTATA + R
Sbjct: 123 EADYLLRDMTISLFAVDEAHCISQWGHDFRPEYARMGFLRTQFPNVPMIALTATADKITR 182
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DI+ L+LK P + I+SFDR NL VK + + +V I + +G I+YCM
Sbjct: 183 EDIVRQLQLKQPEIFISSFDRPNLSLSVKRGYQPKEKSKAIVDFIARHRDESG--IIYCM 240
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ E +++ L++ G++ G YH + ++ R+EA FI D I V+ AT+AFGMGIDK +
Sbjct: 241 SRSKTETVAQMLQKHGIRCGVYHAGLSARQRDEAQDDFINDRIEVVCATIAFGMGIDKSN 300
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY PK++ES+YQE GR GRDG+ S L+Y+ + + ES NQ+
Sbjct: 301 VRWVIHYNLPKSIESFYQEIGRAGRDGMPSDTILFYSLGDLILLTKFATES---NQQNIN 357
Query: 357 MESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 358 LEKLNRMQQYAEADICRR 375
>gi|426256366|ref|XP_004021811.1| PREDICTED: LOW QUALITY PROTEIN: Werner syndrome ATP-dependent
helicase [Ovis aries]
Length = 1446
Score = 313 bits (803), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 166/379 (43%), Positives = 242/379 (63%), Gaps = 10/379 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKR-DCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ LK YFG+S F+P Q VI ++E+R D +VVMATG GKSLC+Q PP+ G LV+S
Sbjct: 544 INCLKTYFGHSSFKPVQWKVIHSVLEERKDNVVVMATGYGKSLCFQYPPVYVGGIGLVIS 603
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ L+ I A FLGSAQ+ + V+ + G ++++++TPE C ++
Sbjct: 604 PLISLMEDQVLQLEISSIPACFLGSAQSKNVVE-DIKLGKYRIVYLTPE-FCSGNLNLLQ 661
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L G+ L AVDEAHCISEWGHDFR ++ L L+ L VP VA+TATA VR DI
Sbjct: 662 QLEANIGITLIAVDEAHCISEWGHDFRSSFRALCSLKAVLPQVPIVAVTATAGSSVREDI 721
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGA----GSIIVYC 235
+ LKLK+P +T FDR NL+ ++V + S +++L Q ++ + A G I+YC
Sbjct: 722 VRCLKLKDPQITCTGFDRPNLY--LEVGRKTGSILEDLKQFLVCKSSSAWEFEGPTIIYC 779
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
+ K E+++ LK+L + GTYH + R++ H F+RDEI+ ++AT+AFGMGI+K
Sbjct: 780 PSRKMTEQVTAELKKLNLACGTYHAGLSINLRKQVHHRFMRDEIQCVIATVAFGMGINKA 839
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTA 355
D+R VIHYG PK +ESYYQE GR GRDG+ S C + +A ++ GE + + +
Sbjct: 840 DIRQVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPADMNLNRHLLGEIRNKEFQLY 899
Query: 356 IMESLLAAQRYCLLTTCRR 374
++ L ++Y + CRR
Sbjct: 900 KLKMLAKMEKYLYSSKCRR 918
>gi|126661004|ref|ZP_01732090.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. CCY0110]
gi|126617703|gb|EAZ88486.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. CCY0110]
Length = 710
Score = 313 bits (803), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 166/381 (43%), Positives = 236/381 (61%), Gaps = 14/381 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ + LK +FGY FR QK +I + +D L++M TG GKSLC+QLP L+ +VVS
Sbjct: 8 LENALKYFFGYDQFRSGQKQIINEALNDKDLLIIMPTGGGKSLCFQLPALLKSGVCVVVS 67
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIPIS 117
PLI+LMQDQV +L GI A FL S +Q++ G +L+++ PE+ ++ +
Sbjct: 68 PLIALMQDQVDALLDNGIGATFLNSTLNREELQSRENAILKGKIKLVYVAPER--LLNDN 125
Query: 118 FWSKL----LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATE 173
F + L K G+ FA+DEAHC+S WGHDFR EY+QL +LR VP ALTATAT+
Sbjct: 126 FLNFLDFLKQKVGLSAFAIDEAHCVSAWGHDFRPEYRQLKQLRFRYPKVPMFALTATATK 185
Query: 174 KVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIV 233
+VR DII L L+NP V +ASFDR NL+Y V+ +R +S+ L +++ G+G I+
Sbjct: 186 RVRADIIEQLGLQNPTVHVASFDRPNLYYEVQQKSR-RSYTQLL--NYIRNQEGSG--II 240
Query: 234 YCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGID 293
YC++ K+VE I+ L+Q G+ A YH M R FIRD++R++VAT+AFGMGI+
Sbjct: 241 YCLSRKNVETIALRLQQDGIDALPYHAGMYDDERATNQTRFIRDDVRIIVATIAFGMGIN 300
Query: 294 KPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQR 353
KPDVR V+HY P+ LESYYQESGR GRDG + C L+++ + + ++ + E ++
Sbjct: 301 KPDVRFVVHYDLPRNLESYYQESGRAGRDGEPANCALFFSFGDLKRLEYLIDQKIDEKEQ 360
Query: 354 TAIMESLLAAQRYCLLTTCRR 374
+ L Y T CRR
Sbjct: 361 RVGRQQLRQVVDYAEGTECRR 381
>gi|423278476|ref|ZP_17257390.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis HMW 610]
gi|404586486|gb|EKA91059.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis HMW 610]
Length = 601
Score = 313 bits (803), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 169/378 (44%), Positives = 237/378 (62%), Gaps = 13/378 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ TLK YFGY FRP Q+++I+ ++ KRD LV+M TG GKS+CYQLP L+ TA+V+S
Sbjct: 1 MIQTLKTYFGYDSFRPLQEEIIRNLMSKRDALVLMPTGGGKSICYQLPALLMEGTAIVIS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV SL GI A L S+ +S +++ +G +LL+++PEK +S
Sbjct: 61 PLISLMKDQVESLCANGIPAGALNSSNDESENANLRRACISGKLKLLYISPEKL----LS 116
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
LL+ + LFAVDEAHCIS+WGHDFR EY ++ LRT +P +ALTATA + R
Sbjct: 117 EADYLLRDMTISLFAVDEAHCISQWGHDFRPEYARMGFLRTQFPNIPMIALTATADKITR 176
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DI+ L+LK P + I+SFDR NL VK + + +V I + +G I+YCM
Sbjct: 177 EDIVRQLQLKQPEIFISSFDRPNLSLSVKRGYQPKEKSKAIVDFIARHRGESG--IIYCM 234
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ E +++ L++ G++ G YH + ++ R+EA FI D I V+ AT+AFGMGIDK +
Sbjct: 235 SRSKTETVAQMLQKHGIRCGVYHAGLSARQRDEAQDDFINDRIEVVCATIAFGMGIDKSN 294
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY PK++ES+YQE GR GRDG+ S L+Y+ + + ES NQ+
Sbjct: 295 VRWVIHYNLPKSIESFYQEIGRAGRDGMPSDTILFYSLGDLILLTKFATES---NQQNIN 351
Query: 357 MESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 352 LEKLNRMQQYAEADICRR 369
>gi|170763502|ref|NP_035851.3| Werner syndrome ATP-dependent helicase homolog [Mus musculus]
gi|170763504|ref|NP_001116294.1| Werner syndrome ATP-dependent helicase homolog [Mus musculus]
gi|342187359|sp|O09053.3|WRN_MOUSE RecName: Full=Werner syndrome ATP-dependent helicase homolog;
AltName: Full=Exonuclease WRN
gi|3885838|gb|AAC78077.1| Wrn protein [Mus musculus]
gi|29748014|gb|AAH50921.1| Wrn protein [Mus musculus]
gi|38173728|gb|AAH60700.1| Wrn protein [Mus musculus]
Length = 1401
Score = 313 bits (802), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 166/377 (44%), Positives = 237/377 (62%), Gaps = 6/377 (1%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ LK YFG+S F+P Q VI ++E +RD +VVMATG GKSLC+Q PP+ TGK +V+S
Sbjct: 501 INCLKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVIS 560
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ L+ + A LGSAQ+ ++ + G ++++++TPE C +
Sbjct: 561 PLISLMEDQVLQLELSNVPACLLGSAQS-KNILGDVKLGKYRVIYITPE-FCSGNLDLLQ 618
Query: 121 KLLKA-GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L + G+ L AVDEAHCISEWGHDFR ++ L L+T L VP +AL+ATA+ +R DI
Sbjct: 619 QLDSSIGITLIAVDEAHCISEWGHDFRSSFRMLGSLKTALPLVPVIALSATASSSIREDI 678
Query: 180 INSLKLKNPYVTIASFDRKNLFY--GVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
I+ L LK+P +T FDR NL+ G K N Q LV++ + G I+YC +
Sbjct: 679 ISCLNLKDPQITCTGFDRPNLYLEVGRKTGNILQDLKPFLVRKASSAWEFEGPTIIYCPS 738
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K E+++ L +L + TYH M R++ H F+RDEI+ +VAT+AFGMGI+K D+
Sbjct: 739 RKMTEQVTAELGKLNLACRTYHAGMKISERKDVHHRFLRDEIQCVVATVAFGMGINKADI 798
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHYG PK +ESYYQE GR GRDG+ S C L +A ++F E E R +
Sbjct: 799 RKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNTSRNLLIEIHDEKFRLYKL 858
Query: 358 ESLLAAQRYCLLTTCRR 374
+ ++ ++Y + CRR
Sbjct: 859 KMMVKMEKYLHSSQCRR 875
>gi|422302785|ref|ZP_16390144.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9806]
gi|389787941|emb|CCI16794.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9806]
Length = 703
Score = 313 bits (802), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 161/379 (42%), Positives = 234/379 (61%), Gaps = 16/379 (4%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
LK +FGY FRP Q+ +I+ + +D LV+M TG GKSLC+QLP L+ +VVSPLI
Sbjct: 10 ALKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVVVSPLI 69
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFWS 120
+LMQDQV +L GI A FL S V+ + G +LL++ PE+ ++ SF
Sbjct: 70 ALMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGKIKLLYVAPER--LLSPSFLD 127
Query: 121 KLL----KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
L G+ AVDEAHC+S+WGHDFR EY+Q+ ++R VP +ALTATAT++VR
Sbjct: 128 FLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTATATQQVR 187
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG-AGSIIVYC 235
DII L L++ + IASF+R NL+Y V Q + Q++ + + G G+ IVYC
Sbjct: 188 EDIIQQLGLRDTSIHIASFNRPNLYYEV------QPKTSKSYQQLYQYIKGQKGAGIVYC 241
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
++ K V+++++ L++ G+ A YH M + R FIRD++++MVAT+AFGMGI+KP
Sbjct: 242 ISRKTVDKVAEQLQKDGINALPYHAGMEDRERSNNQTRFIRDDVQIMVATIAFGMGINKP 301
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTA 355
DVR VIHY P+ LE YYQESGR GRDG + C L+++ ++ K +++ + +N++
Sbjct: 302 DVRFVIHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTEQNEQQK 361
Query: 356 IMESLLAAQRYCLLTTCRR 374
+ L Y T CRR
Sbjct: 362 ARQQLRQVLDYAEGTECRR 380
>gi|425466065|ref|ZP_18845368.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9809]
gi|389831578|emb|CCI25550.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9809]
Length = 703
Score = 313 bits (802), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 161/378 (42%), Positives = 234/378 (61%), Gaps = 16/378 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK +FGY FRP Q+ +I+ + +D LV+M TG GKSLC+QLP L+ +VVSPLI+
Sbjct: 11 LKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVVVSPLIA 70
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV +L GI A FL S V+ + G +LL++ PE+ ++ SF
Sbjct: 71 LMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGKIKLLYVAPER--LLSPSFLDF 128
Query: 122 LL----KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
L G+ AVDEAHC+S+WGHDFR EY+Q+ ++R VP +ALTATAT++VR
Sbjct: 129 LAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTATATQQVRE 188
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG-AGSIIVYCM 236
DII L L++ + IASF+R NL+Y V Q + Q++ + + G G+ IVYC+
Sbjct: 189 DIIQQLGLRDTSIHIASFNRPNLYYEV------QPKTSKSYQQLYQYIKGQKGAGIVYCI 242
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K V+++++ L++ G+ A YH M + R FIRD++++MVAT+AFGMGI+KPD
Sbjct: 243 SRKTVDKVAEQLQKDGINALPYHAGMEDRERSNNQTRFIRDDVQIMVATIAFGMGINKPD 302
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY P+ LE YYQESGR GRDG + C L+++ ++ K +++ + +N++
Sbjct: 303 VRFVIHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTEQNEQQKA 362
Query: 357 MESLLAAQRYCLLTTCRR 374
+ L Y T CRR
Sbjct: 363 RQQLRQVLDYAEGTECRR 380
>gi|166362830|ref|YP_001655103.1| ATP-dependent DNA helicase [Microcystis aeruginosa NIES-843]
gi|166085203|dbj|BAF99910.1| ATP-dependent DNA helicase [Microcystis aeruginosa NIES-843]
Length = 703
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 161/379 (42%), Positives = 234/379 (61%), Gaps = 16/379 (4%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
LK +FGY FRP Q+ +I+ + +D LV+M TG GKSLC+QLP L+ +VVSPLI
Sbjct: 10 ALKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVVVSPLI 69
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFWS 120
+LMQDQV +L GI A FL S V+ + G +LL++ PE+ ++ SF
Sbjct: 70 ALMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGKIKLLYVAPER--LLSPSFLD 127
Query: 121 KLL----KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
L G+ AVDEAHC+S+WGHDFR EY+Q+ ++R VP +ALTATAT++VR
Sbjct: 128 FLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTATATQQVR 187
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG-AGSIIVYC 235
DII L L++ + IASF+R NL+Y V Q + Q++ + + G G+ IVYC
Sbjct: 188 EDIIQQLGLRDTSIHIASFNRPNLYYEV------QPKTSKSYQQLYQYIKGQKGAGIVYC 241
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
++ K V+++++ L++ G+ A YH M + R FIRD++++MVAT+AFGMGI+KP
Sbjct: 242 ISRKTVDKVAEQLQKDGINALPYHAGMEDRERSNNQTRFIRDDVQIMVATIAFGMGINKP 301
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTA 355
DVR VIHY P+ LE YYQESGR GRDG + C L+++ ++ K +++ + +N++
Sbjct: 302 DVRFVIHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTEQNEQQK 361
Query: 356 IMESLLAAQRYCLLTTCRR 374
+ L Y T CRR
Sbjct: 362 ARQQLRQVLDYAEGTECRR 380
>gi|423239789|ref|ZP_17220905.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei CL03T12C01]
gi|392645829|gb|EIY39552.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei CL03T12C01]
Length = 605
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 170/377 (45%), Positives = 235/377 (62%), Gaps = 11/377 (2%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M TLK YFGY FRP Q+D+IQ I+ ++D LV+M TG GKS+CYQLP L+ TA+VVS
Sbjct: 1 MFQTLKNYFGYDSFRPLQQDIIQNILTQKDTLVLMPTGGGKSICYQLPALLMEGTAIVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS-SVQTKAE--TGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV SL+ GI A L S+ ++ ++ + E G +LL+++PE+ +I +
Sbjct: 61 PLISLMKDQVESLQANGIAARALNSSNNETENINLRRECLQGKIKLLYISPER-LLIETN 119
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
F K ++ + LFA+DEAHCIS+WGHDFR EY QL LR VP VALTATA + R
Sbjct: 120 FLLKDIQ--ISLFAIDEAHCISQWGHDFRPEYTQLKVLRNQFPKVPIVALTATADKITRK 177
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI L LK+P + I+SFDR NL VK + + +++ I K G I+YCM+
Sbjct: 178 DIAQQLALKDPKIFISSFDRPNLSLEVKRGYQQKDKARTILEFIEKHKNECG--IIYCMS 235
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
E ++ L + G++A YH + S R++A FI D ++V+ AT+AFGMGIDK +V
Sbjct: 236 RSKTENVAAMLMKQGIRATVYHAGLSSDMRDKAQNDFINDRVQVVCATIAFGMGIDKSNV 295
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHY PK++ES+YQE GR GRDG+ S L+Y+ + + ES +Q+ +
Sbjct: 296 RWVIHYNLPKSIESFYQEIGRAGRDGMESDTLLFYSLGDLVMLSKFATES---SQQEINL 352
Query: 358 ESLLAAQRYCLLTTCRR 374
E L Q+Y CRR
Sbjct: 353 EKLHRMQQYAESDICRR 369
>gi|424664440|ref|ZP_18101476.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis HMW 616]
gi|404576022|gb|EKA80763.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis HMW 616]
Length = 601
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 169/378 (44%), Positives = 237/378 (62%), Gaps = 13/378 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ TLK YFGY FRP Q+++I+ ++ KRD LV+M TG GKS+CYQLP L+ TA+V+S
Sbjct: 1 MIQTLKIYFGYDSFRPLQEEIIRNLMSKRDALVLMPTGGGKSICYQLPALLMEGTAIVIS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV SL GI A L S+ +S +++ +G +LL+++PEK +S
Sbjct: 61 PLISLMKDQVESLCANGIPAGALNSSNDESENANLRRACISGKLKLLYISPEKL----LS 116
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
LL+ + LFAVDEAHCIS+WGHDFR EY ++ LRT +P +ALTATA + R
Sbjct: 117 EADYLLRDMTISLFAVDEAHCISQWGHDFRPEYARMGFLRTQFPNIPMIALTATADKITR 176
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DI+ L+LK P + I+SFDR NL VK + + +V I + +G I+YCM
Sbjct: 177 EDIVRQLQLKQPEIFISSFDRPNLSLSVKRGYQPKEKSKAIVDFIARHRGESG--IIYCM 234
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ E +++ L++ G++ G YH + ++ R+EA FI D I V+ AT+AFGMGIDK +
Sbjct: 235 SRSKTETVAQMLQKHGIRCGVYHAGLSARQRDEAQDNFINDRIEVVCATIAFGMGIDKSN 294
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY PK++ES+YQE GR GRDG+ S L+Y+ + + ES NQ+
Sbjct: 295 VRWVIHYNLPKSIESFYQEIGRAGRDGMPSDTILFYSLGDLILLTKFATES---NQQNIN 351
Query: 357 MESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 352 LEKLNRMQQYAEADICRR 369
>gi|265751367|ref|ZP_06087430.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 3_1_33FAA]
gi|345514773|ref|ZP_08794279.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei 5_1_36/D4]
gi|423228784|ref|ZP_17215190.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei CL02T00C15]
gi|423247595|ref|ZP_17228644.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei CL02T12C06]
gi|229437610|gb|EEO47687.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei 5_1_36/D4]
gi|263238263|gb|EEZ23713.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 3_1_33FAA]
gi|392631925|gb|EIY25892.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei CL02T12C06]
gi|392635523|gb|EIY29422.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei CL02T00C15]
Length = 605
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 170/377 (45%), Positives = 235/377 (62%), Gaps = 11/377 (2%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M TLK YFGY FRP Q+D+IQ I+ ++D LV+M TG GKS+CYQLP L+ TA+VVS
Sbjct: 1 MFQTLKNYFGYDSFRPLQQDIIQNILAQKDTLVLMPTGGGKSICYQLPALLMEGTAIVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS-SVQTKAE--TGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV SL+ GI A L S+ ++ ++ + E G +LL+++PE+ +I +
Sbjct: 61 PLISLMKDQVESLQANGIAARALNSSNNETENINLRRECLQGKIKLLYISPER-LLIETN 119
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
F K ++ + LFA+DEAHCIS+WGHDFR EY QL LR VP VALTATA + R
Sbjct: 120 FLLKDIQ--ISLFAIDEAHCISQWGHDFRPEYTQLKVLRNQFPKVPIVALTATADKITRK 177
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI L LK+P + I+SFDR NL VK + + +++ I K G I+YCM+
Sbjct: 178 DIAQQLALKDPKIFISSFDRPNLSLEVKRGYQQKDKARTILEFIEKHKNECG--IIYCMS 235
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
E ++ L + G++A YH + S R++A FI D ++V+ AT+AFGMGIDK +V
Sbjct: 236 RSKTESVAAMLMKQGIRATVYHAGLSSDMRDKAQNDFINDRVQVVCATIAFGMGIDKSNV 295
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHY PK++ES+YQE GR GRDG+ S L+Y+ + + ES +Q+ +
Sbjct: 296 RWVIHYNLPKSIESFYQEIGRAGRDGMESDTLLFYSLGDLVMLSKFATES---SQQEINL 352
Query: 358 ESLLAAQRYCLLTTCRR 374
E L Q+Y CRR
Sbjct: 353 EKLHRMQQYAESDICRR 369
>gi|223940604|ref|ZP_03632448.1| ATP-dependent DNA helicase RecQ [bacterium Ellin514]
gi|223890722|gb|EEF57239.1| ATP-dependent DNA helicase RecQ [bacterium Ellin514]
Length = 728
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 163/381 (42%), Positives = 231/381 (60%), Gaps = 18/381 (4%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ TLK+YFG+S FRP Q+++I + +D ++ TG GKSLC+QLP LV +V+S
Sbjct: 12 LLPTLKQYFGFSSFRPLQEEIILDTLAGKDVFALLPTGGGKSLCFQLPALVRPGLTVVIS 71
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSA--QTDSSVQTKA-ETGYFQLLFMTPEKACIIPIS 117
PLI+LM+DQV +L G A FL S+ +S+ + + G F+LL++ PE+ ++
Sbjct: 72 PLIALMKDQVDALTASGAPATFLNSSLEAGESTPRLRGLHKGEFRLLYVAPER--LMLSG 129
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
F L + V LFA+DEAHC+SEWGHDFR EY+ + KLR VPF+ALTATATE+VR
Sbjct: 130 FLEDLRRWNVNLFAIDEAHCVSEWGHDFRPEYRAISKLRELFPEVPFMALTATATERVRE 189
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKV----INRGQSFVDELVQEILKSVAGAGSIIV 233
DII +L L+ P + +ASF+R NL Y V + SF+ +E S IV
Sbjct: 190 DIIRALSLREPQIFVASFNRPNLTYRVHAKSGAYEQTLSFIRARPRE---------SGIV 240
Query: 234 YCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGID 293
YC + K E +++ L + GV A YH + + R LF+RDE+RV+ AT+AFGMGI+
Sbjct: 241 YCHSRKTAESVAQKLNEDGVSARPYHAGLPGEERSRNQELFLRDEVRVVCATIAFGMGIN 300
Query: 294 KPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQR 353
KP+VR VIHY PK +E YYQE+GR GRDG+ S C L ++ + K + E +++
Sbjct: 301 KPNVRFVIHYDLPKNVEGYYQETGRAGRDGLPSECLLLFSPGDVVKQTGFINEKTDPHEQ 360
Query: 354 TAIMESLLAAQRYCLLTTCRR 374
E L Y + +CRR
Sbjct: 361 QLAREQLQQMVHYAEIASCRR 381
>gi|350593451|ref|XP_003133429.3| PREDICTED: Werner syndrome ATP-dependent helicase [Sus scrofa]
Length = 1443
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 167/377 (44%), Positives = 233/377 (61%), Gaps = 6/377 (1%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ LK YFG+S F+P Q VI I+E +RD +VVMATG GKSLC+Q PP+ G LV+S
Sbjct: 540 INCLKTYFGHSSFKPVQWKVIHSILEERRDNVVVMATGYGKSLCFQYPPVSVGGIGLVIS 599
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ L+ I A FLGSAQ+ +V + G ++++++TPE C +
Sbjct: 600 PLISLMEDQVLQLEMSNIPACFLGSAQS-KNVLEDIKLGKYRIVYLTPE-FCSGNLDLLQ 657
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
L G+ + AVDEAHCISEWGHDFR ++ L L++ L VP VALTAT T +R DI
Sbjct: 658 HLEANIGITVIAVDEAHCISEWGHDFRNSFRTLGSLKSALPLVPIVALTATGTSSIREDI 717
Query: 180 INSLKLKNPYVTIASFDRKNLFY--GVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
+ LKLK+P +T FDR NL+ G K + Q LVQ+ + G I+YC +
Sbjct: 718 VRCLKLKDPQITCTGFDRPNLYLEVGRKTGDILQDLKQFLVQKTSSAWEFEGPTIIYCPS 777
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K E+++ LK+L + TYH + R++ H F+RDEI+ ++AT+AFGMGI+K D+
Sbjct: 778 RKMTEQVTAELKKLKLACETYHAGLSIHLRKQVHHKFMRDEIQCVIATIAFGMGINKADI 837
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHYG PK +ESYYQE GR GRDG+ S C + +A ++ E EN R +
Sbjct: 838 RKVIHYGAPKEIESYYQEIGRAGRDGLQSSCHILWAPADINLNRHLLSEICNENFRLYKL 897
Query: 358 ESLLAAQRYCLLTTCRR 374
+ + ++Y + CRR
Sbjct: 898 KMMAKMEKYLHSSRCRR 914
>gi|402877950|ref|XP_003902671.1| PREDICTED: Werner syndrome ATP-dependent helicase [Papio anubis]
Length = 1373
Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 165/369 (44%), Positives = 229/369 (62%), Gaps = 6/369 (1%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
V+ LK YFG+S F+P Q VI ++E +RD + VMATG GKSLC+Q PP+ GK LV+S
Sbjct: 536 VTCLKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVIS 595
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ LK I FLGSAQ+++ V T + G ++++++TPE C +
Sbjct: 596 PLISLMEDQVLQLKMSNIPTCFLGSAQSEN-VLTDIKLGKYRIVYITPE-YCSGNMGLLQ 653
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L G+ L AVDEAHCISEWGHDFR +++L L+T L VP VALTATAT +R DI
Sbjct: 654 QLEANIGITLIAVDEAHCISEWGHDFRNSFRKLGSLKTALPMVPIVALTATATSSIREDI 713
Query: 180 INSLKLKNPYVTIASFDRKNLFYGV--KVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
+ L L+NP + FDR NL+ V K N Q LV+ G I+YC +
Sbjct: 714 VRCLNLRNPQIICTGFDRPNLYLEVRRKTGNILQDLQPFLVKTTSSHWEFEGPTIIYCPS 773
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K E+++ L++L + TYH M R++ H F+RDEI+ ++AT+AFGMGI+K D+
Sbjct: 774 RKMTEQVTAELRKLNLSCETYHAGMSFSRRKDVHHRFVRDEIQCVIATIAFGMGINKADI 833
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHYG PK +ESYYQE GR GRDG+ S C + +A ++ E + E R +
Sbjct: 834 RQVIHYGAPKEMESYYQEIGRAGRDGLQSSCHILWAPADINLNRHLLTEIRNEKFRLYKL 893
Query: 358 ESLLAAQRY 366
+ + ++Y
Sbjct: 894 KMMAKMEKY 902
>gi|374628883|ref|ZP_09701268.1| ATP-dependent DNA helicase RecQ [Methanoplanus limicola DSM 2279]
gi|373906996|gb|EHQ35100.1| ATP-dependent DNA helicase RecQ [Methanoplanus limicola DSM 2279]
Length = 720
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 164/374 (43%), Positives = 229/374 (61%), Gaps = 14/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LKK+FGY PYQ+++I ++ RD L V+ATG GKS+CYQLP L++ A+V+SPLIS
Sbjct: 5 LKKHFGYDFLYPYQEEIIDAVLSGRDVLGVVATGGGKSICYQLPALLSDGMAVVISPLIS 64
Query: 65 LMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQ SL++ GI AE S+ + + A G LL+++PEK + SF
Sbjct: 65 LMKDQTDSLREMGIYAESFNSSLDIRDYGRISADAGRGDIDLLYVSPEK--MASQSFRKL 122
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L A + LFAVDEAHCIS+WGH+FR EY+QL ++ GVP +ALTATA VR DI+
Sbjct: 123 LKSAKISLFAVDEAHCISQWGHEFRPEYRQLGLIKREFPGVPVIALTATANPAVRDDILR 182
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG--AGSIIVYCMTIK 239
LKLK+P+V I SF R NL Y V+ ++ + +IL + G S I+YC +
Sbjct: 183 QLKLKDPFVQIGSFRRSNLNYEVRE-------KEDTLGQILSYIRGKKGESGIIYCSSRN 235
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
VE ++K L G+ + YH + R + FI+ E+ ++VAT+AFGMGI+KPDVR+
Sbjct: 236 SVEILTKKLNSYGIYSLPYHAGLSKDERAKTQEKFIKGEVFLVVATVAFGMGINKPDVRY 295
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V+HY P LE YYQE+GR GRDG +S C L+Y+R + K +++ G Q+ Q+ E
Sbjct: 296 VLHYDLPPNLERYYQETGRAGRDGKSSDCILFYSRGDRIKAEYFIGRMQSAKQKRIAREK 355
Query: 360 LLAAQRYCLLTTCR 373
L +C CR
Sbjct: 356 LDEMTEFCESDRCR 369
>gi|212693848|ref|ZP_03301976.1| hypothetical protein BACDOR_03370 [Bacteroides dorei DSM 17855]
gi|237708472|ref|ZP_04538953.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 9_1_42FAA]
gi|212663600|gb|EEB24174.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei DSM 17855]
gi|229457401|gb|EEO63122.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 9_1_42FAA]
Length = 605
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 169/377 (44%), Positives = 235/377 (62%), Gaps = 11/377 (2%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M TLK YFGY FRP Q+D+IQ I+ ++D LV+M TG GKS+CYQLP L+ TA+VVS
Sbjct: 1 MFQTLKNYFGYDSFRPLQQDIIQNILAQKDTLVLMPTGGGKSICYQLPALLMEGTAIVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV SL+ GI A L S+ ++ +++ + G +LL+++PE+ +I +
Sbjct: 61 PLISLMKDQVESLQANGIAARALNSSNNETENINLRRECLQGKIKLLYISPER-LLIETN 119
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
F K ++ + LFA+DEAHCIS+WGHDFR EY QL LR VP VALTATA + R
Sbjct: 120 FLLKDIQ--ISLFAIDEAHCISQWGHDFRPEYTQLKVLRNQFPKVPIVALTATADKITRK 177
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI L LK+P + I+SFDR NL VK + + +++ I K G I+YCM+
Sbjct: 178 DIAQQLVLKDPKIFISSFDRPNLSLEVKRGYQQKDKARTILEFIEKHKNECG--IIYCMS 235
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
E ++ L + G++A YH + S R++A FI D ++V+ AT+AFGMGIDK +V
Sbjct: 236 RSKTENVAAMLMKQGIRATVYHAGLSSDMRDKAQNDFINDRVQVVCATIAFGMGIDKSNV 295
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHY PK++ES+YQE GR GRDG+ S L+Y+ + + ES +Q+ +
Sbjct: 296 RWVIHYNLPKSIESFYQEIGRAGRDGMESDTLLFYSLGDLVMLSKFATES---SQQEINL 352
Query: 358 ESLLAAQRYCLLTTCRR 374
E L Q+Y CRR
Sbjct: 353 EKLHRMQQYAESDICRR 369
>gi|383119448|ref|ZP_09940187.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 3_2_5]
gi|382973213|gb|EES87060.2| ATP-dependent DNA helicase RecQ [Bacteroides sp. 3_2_5]
Length = 601
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 167/378 (44%), Positives = 236/378 (62%), Gaps = 13/378 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ TLK YFGY FRP Q+++I +I K+D LV+M TG GKS+CYQLP L+ TA+V+S
Sbjct: 1 MIQTLKTYFGYDSFRPLQEEIIHNLISKKDSLVLMPTGGGKSICYQLPALLMEGTAIVIS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L+ GI A L S+ ++ +++ +G +LL+++PEK +S
Sbjct: 61 PLISLMKDQVETLRANGIPAGALNSSNDETENANLRRACISGQLKLLYISPEKL----LS 116
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
LL+ + LFAVDEAHCIS+WGHDFR EY ++ LR VP +ALTATA + R
Sbjct: 117 EADYLLRDMTLSLFAVDEAHCISQWGHDFRPEYARMGFLRNQFPNVPMIALTATADKITR 176
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DI+ L+L+ P + I+SFDR NL VK + + +V I + +G IVYCM
Sbjct: 177 EDIVRQLQLRQPQIFISSFDRPNLSLSVKRGYQPKEKSKAIVDFITRHRGESG--IVYCM 234
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ E +++ L++ G++ G YH + ++ R+E FI D I V+ AT+AFGMGIDK +
Sbjct: 235 SRSKTETVAQMLQKHGIRCGVYHAGLSARQRDETQDDFINDRIEVVCATIAFGMGIDKSN 294
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY PK++ES+YQE GR GRDG+AS L+Y+ + + ES NQ+
Sbjct: 295 VRWVIHYNLPKSIESFYQEIGRAGRDGMASDTILFYSLGDLILLTKFATES---NQQNIN 351
Query: 357 MESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 352 LEKLNRMQQYAESDICRR 369
>gi|425441134|ref|ZP_18821420.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9717]
gi|389718248|emb|CCH97777.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9717]
Length = 703
Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 160/378 (42%), Positives = 233/378 (61%), Gaps = 16/378 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK +FGY FRP Q+ +I+ + +D LV+M TG GKSLC+QLP L+ +VVSPLI+
Sbjct: 11 LKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVVVSPLIA 70
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV +L GI A FL S V+ + G +LL++ PE+ ++ SF
Sbjct: 71 LMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGKIKLLYVAPER--LLSPSFLDF 128
Query: 122 LL----KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
L G+ AVDEAHC+S+WGHDFR EY+Q+ ++R VP +ALTATAT++VR
Sbjct: 129 LAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTATATQQVRE 188
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG-AGSIIVYCM 236
DII L L++ + IASF+R NL+Y V Q + Q++ + + G G+ IVYC+
Sbjct: 189 DIIQQLGLRDTSIHIASFNRPNLYYEV------QPKTSKSYQQLYQYIKGQKGAGIVYCI 242
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K V+++++ L++ G+ A YH M + R FIRD++++MVAT+AFGMGI+KPD
Sbjct: 243 SRKTVDKVAEQLQKDGINALPYHAGMEDRERSNNQTRFIRDDVQIMVATIAFGMGINKPD 302
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY P+ LE YYQESGR GRDG + C L+++ ++ K +++ + +N++
Sbjct: 303 VRFVIHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTEQNEQQKA 362
Query: 357 MESLLAAQRYCLLTTCRR 374
+ L Y CRR
Sbjct: 363 RQQLRQVLDYAEGNECRR 380
>gi|336411370|ref|ZP_08591837.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 2_1_56FAA]
gi|423251179|ref|ZP_17232194.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL03T00C08]
gi|423254505|ref|ZP_17235435.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL03T12C07]
gi|335942081|gb|EGN03930.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 2_1_56FAA]
gi|392652136|gb|EIY45798.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL03T00C08]
gi|392653827|gb|EIY47478.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL03T12C07]
Length = 601
Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 166/378 (43%), Positives = 236/378 (62%), Gaps = 13/378 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ TLK YFGY FRP Q+++I +I K+D LV+M TG GKS+CYQLP L+ TA+V+S
Sbjct: 1 MIQTLKTYFGYDSFRPLQEEIIHNLISKKDSLVLMPTGGGKSICYQLPALLMEGTAIVIS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L+ GI A L S+ ++ +++ +G +LL+++PEK +S
Sbjct: 61 PLISLMKDQVETLRANGIPAGALNSSNDETENANLRRACISGQLKLLYISPEKL----LS 116
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
LL+ + LFAVDEAHCIS+WGHDFR EY ++ LR VP +ALTATA + R
Sbjct: 117 EADYLLRDMTLSLFAVDEAHCISQWGHDFRPEYARMGFLRNQFPNVPMIALTATADKITR 176
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DI+ L+L+ P + I+SFDR NL VK + + ++ I + +G IVYCM
Sbjct: 177 EDIVRQLQLRQPQIFISSFDRPNLSLSVKRGYQPKEKSKAIIDFITRHRGESG--IVYCM 234
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ E +++ L++ G++ G YH + ++ R+E FI D I V+ AT+AFGMGIDK +
Sbjct: 235 SRSKTETVAQMLQKHGIRCGVYHAGLSARQRDETQDDFINDRIEVVCATIAFGMGIDKSN 294
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY PK++ES+YQE GR GRDG+AS L+Y+ + + ES NQ+
Sbjct: 295 VRWVIHYNLPKSIESFYQEIGRAGRDGMASDTILFYSLGDLILLTKFATES---NQQNIN 351
Query: 357 MESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 352 LEKLNRMQQYAESDICRR 369
>gi|391341494|ref|XP_003745065.1| PREDICTED: Werner syndrome ATP-dependent helicase-like [Metaseiulus
occidentalis]
Length = 869
Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 160/339 (47%), Positives = 222/339 (65%), Gaps = 11/339 (3%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRII-EKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ TL+ +FG+ F+ Q VI ++ +++D +V+MATGSGKSLCYQ PP+ G+ A+V+S
Sbjct: 188 LETLRNFFGHETFKESQWKVISSVLTDRKDNIVLMATGSGKSLCYQFPPVYLGQLAIVIS 247
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSS-VQTKAETGYFQLLFMTPEKACIIPISFW 119
PLISLMQDQV L G+ A FLGSAQTDSS ++ + +++L++TPE A +
Sbjct: 248 PLISLMQDQVRKLDGFGVPAAFLGSAQTDSSRIREELFNRTYRVLYLTPEFAAENSLFLT 307
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+ G+CL AVDEAHC+S+WGH+FR Y+ L +LRT L +PF+ALTATA+ V+ DI
Sbjct: 308 NLNESVGICLVAVDEAHCVSQWGHEFRKTYRSLGELRTRFLEIPFMALTATASANVQNDI 367
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAG-SIIVYCMTI 238
+SL+L P++T+ FDR NL+ VK R S +L+ SV G S I+YC
Sbjct: 368 ESSLRLLQPWITVTPFDRPNLYLTVK---RKTSPDRDLL-----SVLDPGVSTIIYCPKR 419
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
EE+S L+ G+ A YH M AR+E F+ ++VAT+AFGMGIDKPDVR
Sbjct: 420 VTTEEVSMLLRSKGIPANAYHAGMTPSARKETQDAFVNGTNPIIVATIAFGMGIDKPDVR 479
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNF 337
V+HYG P++LE+YYQE GR GRDG S+C ++ S+F
Sbjct: 480 KVVHYGAPQSLEAYYQEIGRAGRDGEPSLCATFWDSSDF 518
>gi|53714712|ref|YP_100704.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis YCH46]
gi|52217577|dbj|BAD50170.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis YCH46]
Length = 607
Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 166/378 (43%), Positives = 236/378 (62%), Gaps = 13/378 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ TLK YFGY FRP Q+++I +I K+D LV+M TG GKS+CYQLP L+ TA+V+S
Sbjct: 7 MIQTLKTYFGYDSFRPLQEEIIHNLISKKDSLVLMPTGGGKSICYQLPALLMEGTAIVIS 66
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L+ GI A L S+ ++ +++ +G +LL+++PEK +S
Sbjct: 67 PLISLMKDQVETLRANGIPAGALNSSNDETENANLRRACISGQLKLLYISPEKL----LS 122
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
LL+ + LFAVDEAHCIS+WGHDFR EY ++ LR VP +ALTATA + R
Sbjct: 123 EADYLLRDMTLSLFAVDEAHCISQWGHDFRPEYARMGFLRNQFPNVPMIALTATADKITR 182
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DI+ L+L+ P + I+SFDR NL VK + + ++ I + +G IVYCM
Sbjct: 183 EDIVRQLQLRQPQIFISSFDRPNLSLSVKRGYQPKEKSKAIIDFITRHRGESG--IVYCM 240
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ E +++ L++ G++ G YH + ++ R+E FI D I V+ AT+AFGMGIDK +
Sbjct: 241 SRSKTETVAQMLQKHGIRCGVYHAGLSARQRDETQDDFINDRIEVVCATIAFGMGIDKSN 300
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY PK++ES+YQE GR GRDG+AS L+Y+ + + ES NQ+
Sbjct: 301 VRWVIHYNLPKSIESFYQEIGRAGRDGMASDTILFYSLGDLILLTKFATES---NQQNIN 357
Query: 357 MESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 358 LEKLNRMQQYAESDICRR 375
>gi|375359515|ref|YP_005112287.1| putative ATP-dependent DNA helicase [Bacteroides fragilis 638R]
gi|301164196|emb|CBW23754.1| putative ATP-dependent DNA helicase [Bacteroides fragilis 638R]
Length = 607
Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 166/378 (43%), Positives = 236/378 (62%), Gaps = 13/378 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ TLK YFGY FRP Q+++I +I K+D LV+M TG GKS+CYQLP L+ TA+V+S
Sbjct: 7 MIQTLKTYFGYDSFRPLQEEIIHNLISKKDSLVLMPTGGGKSICYQLPALLMEGTAIVIS 66
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L+ GI A L S+ ++ +++ +G +LL+++PEK +S
Sbjct: 67 PLISLMKDQVETLRANGIPAGALNSSNDETENANLRRACISGQLKLLYISPEKL----LS 122
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
LL+ + LFAVDEAHCIS+WGHDFR EY ++ LR VP +ALTATA + R
Sbjct: 123 EADYLLRDMTLSLFAVDEAHCISQWGHDFRPEYARMGFLRNQFPNVPMIALTATADKITR 182
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DI+ L+L+ P + I+SFDR NL VK + + ++ I + +G IVYCM
Sbjct: 183 EDIVRQLQLRQPQIFISSFDRPNLSLSVKRGYQPKEKSKAIIDFITRHRGESG--IVYCM 240
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ E +++ L++ G++ G YH + ++ R+E FI D I V+ AT+AFGMGIDK +
Sbjct: 241 SRSKTETVAQMLQKHGIRCGVYHAGLSARQRDETQDDFINDRIEVVCATIAFGMGIDKSN 300
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY PK++ES+YQE GR GRDG+AS L+Y+ + + ES NQ+
Sbjct: 301 VRWVIHYNLPKSIESFYQEIGRAGRDGMASDTILFYSLGDLILLTKFATES---NQQNIN 357
Query: 357 MESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 358 LEKLNRMQQYAESDICRR 375
>gi|423283377|ref|ZP_17262261.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis HMW 615]
gi|404581095|gb|EKA85801.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis HMW 615]
Length = 601
Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 167/378 (44%), Positives = 235/378 (62%), Gaps = 13/378 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ TLK YFGY FRP Q+++I +I K+D LV+M TG GKS+CYQLP L+ TA+V+S
Sbjct: 1 MIQTLKTYFGYDSFRPLQEEIIHNLISKKDSLVLMPTGGGKSICYQLPALLMEGTAIVIS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L+ GI A L S+ ++ +++ +G +LL+++PEK +S
Sbjct: 61 PLISLMKDQVETLRANGIPAGALNSSNDETENANLRRACISGQLKLLYISPEKL----LS 116
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
LL+ + LFAVDEAHCIS+WGHDFR EY ++ LR VP +ALTATA + R
Sbjct: 117 EADYLLRDMTLSLFAVDEAHCISQWGHDFRPEYARMGFLRNQFPNVPMIALTATADKITR 176
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DI+ L+L+ P + I+SFDR NL VK + + +V I + +G IVYCM
Sbjct: 177 EDIVRQLQLRQPQIFISSFDRPNLSLSVKRGYQPKEKSKAIVDFITRHRGESG--IVYCM 234
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ E +++ L++ G++ G YH + ++ R E FI D I V+ AT+AFGMGIDK +
Sbjct: 235 SRSKTETVAQMLQKHGIRCGVYHAGLSARQRNETQDDFINDRIEVVCATIAFGMGIDKSN 294
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY PK++ES+YQE GR GRDG+AS L+Y+ + + ES NQ+
Sbjct: 295 VRWVIHYNLPKSIESFYQEIGRAGRDGMASDTILFYSLGDLILLTKFATES---NQQNIN 351
Query: 357 MESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 352 LEKLNRMQQYAESDICRR 369
>gi|428201759|ref|YP_007080348.1| ATP-dependent DNA helicase RecQ [Pleurocapsa sp. PCC 7327]
gi|427979191|gb|AFY76791.1| ATP-dependent DNA helicase RecQ [Pleurocapsa sp. PCC 7327]
Length = 708
Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 163/381 (42%), Positives = 245/381 (64%), Gaps = 14/381 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ + LK +FGY FRP Q+ +++ ++ RD LV+M TG GKSLC+QLP L+ +VVS
Sbjct: 7 LEAALKHFFGYEHFRPGQRKIVEEALQNRDLLVIMPTGGGKSLCFQLPALLKPGLTVVVS 66
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIPIS 117
PLI+LMQD+V +L+ GI A FL S+ T V+++ G +LL++ PE+ ++
Sbjct: 67 PLIALMQDRVDALQDNGIGATFLNSSLTFPEVRSRETAILDGKIKLLYVAPER--LLSER 124
Query: 118 FWSKL----LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATE 173
F + L K + FA+DEAHC+SEWGHDFR EY+QL +LR VP ALTATAT+
Sbjct: 125 FRNFLDLAATKISITAFAIDEAHCVSEWGHDFRPEYRQLIQLRQRYPHVPMFALTATATK 184
Query: 174 KVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIV 233
+V+ DII L L+ P + +ASF+R N++Y V+ R +S+ ++L++ ++++ G+G IV
Sbjct: 185 RVQEDIIQQLGLRQPGIHLASFNRPNIYYEVQPKER-RSY-NQLLK-LIRTQQGSG--IV 239
Query: 234 YCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGID 293
YC++ ++V+EI+ L++ G+ YH + +AR FIRD+++V+VAT+AFGMGID
Sbjct: 240 YCLSRRNVDEIAFRLQKDGISTVPYHAGITDEARTLNQTRFIRDDVKVIVATIAFGMGID 299
Query: 294 KPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQR 353
KPDVR VIHY P+ LESYYQESGR GRDG + C L+ + +F + ++ + ++
Sbjct: 300 KPDVRFVIHYDLPRNLESYYQESGRAGRDGEPANCTLFLSLGDFKRIEYIIDQKSDPQEQ 359
Query: 354 TAIMESLLAAQRYCLLTTCRR 374
+ L Y T CRR
Sbjct: 360 RIARQQLRQVINYAEGTECRR 380
>gi|60682718|ref|YP_212862.1| ATP-dependent DNA helicase [Bacteroides fragilis NCTC 9343]
gi|60494152|emb|CAH08944.1| putative ATP-dependent DNA helicase [Bacteroides fragilis NCTC
9343]
Length = 607
Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 165/378 (43%), Positives = 236/378 (62%), Gaps = 13/378 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ TLK YFGY FRP Q+++I +I K+D LV+M TG GKS+CYQLP L+ TA+V+S
Sbjct: 7 MIQTLKTYFGYDSFRPLQEEIIHNLISKKDSLVLMPTGGGKSICYQLPALLMEGTAIVIS 66
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L+ GI A L S+ ++ +++ +G +LL+++PEK +S
Sbjct: 67 PLISLMKDQVETLRANGIPAGALNSSNDETENANLRRACISGQLKLLYISPEKL----LS 122
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
LL+ + LFAVDEAHCIS+WGHDFR EY ++ LR VP +ALTATA + R
Sbjct: 123 EADYLLRDMTLSLFAVDEAHCISQWGHDFRPEYARMGFLRNQFPNVPMIALTATADKITR 182
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DI+ L+L+ P + I+SFDR NL VK + + ++ I + +G I+YCM
Sbjct: 183 EDIVRQLQLRQPQIFISSFDRPNLSLSVKRGYQPKEKSKAIIDFITRHRGESG--IIYCM 240
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ E +++ L++ G++ G YH + ++ R+E FI D I V+ AT+AFGMGIDK +
Sbjct: 241 SRSKTETVAQMLQKHGIRCGVYHAGLSARQRDETQDDFINDRIEVVCATIAFGMGIDKSN 300
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY PK++ES+YQE GR GRDG+AS L+Y+ + + ES NQ+
Sbjct: 301 VRWVIHYNLPKSIESFYQEIGRAGRDGMASDTILFYSLGDLILLTKFATES---NQQNIN 357
Query: 357 MESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 358 LEKLNRMQQYAESDICRR 375
>gi|325298909|ref|YP_004258826.1| ATP-dependent DNA helicase RecQ [Bacteroides salanitronis DSM
18170]
gi|324318462|gb|ADY36353.1| ATP-dependent DNA helicase RecQ [Bacteroides salanitronis DSM
18170]
Length = 606
Score = 310 bits (795), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 169/379 (44%), Positives = 238/379 (62%), Gaps = 15/379 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ TLK YFGY+ FRP Q+++I +++K+D LV+M TG GKSLCYQ+P L+T TA+VVS
Sbjct: 1 MLKTLKSYFGYTSFRPLQEEIISCVLQKKDTLVLMPTGGGKSLCYQIPALLTEGTAIVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQ---TDSSVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L+ GI A L S +++++ + G +LL+++PE+ + I+
Sbjct: 61 PLISLMKDQVEALQNNGIIARALNSNNDETANANIRFECRQGRVKLLYISPER-LLAEIN 119
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
+ K + + LFA+DEAHCIS+WGHDFR EY QL LR VP +ALTATA + R
Sbjct: 120 YLLKDIH--ISLFAIDEAHCISQWGHDFRPEYTQLAVLREQFPHVPIIALTATADKITRE 177
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRG--QSFVDELVQEILKSVAGAGSIIVYC 235
DI+ L +++P + I+SFDR NL VK RG Q + V E + G S IVYC
Sbjct: 178 DIVKQLAMRDPQIFISSFDRPNLSLDVK---RGYQQKEKNRAVLEFITRHKGE-SGIVYC 233
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
M+ E+++ L++ GV YH + S R++A FI D ++V+ AT+AFGMGIDK
Sbjct: 234 MSRNTTEKVADMLEEHGVSTAVYHAGLSSTIRDKAQEDFINDRVQVVCATIAFGMGIDKS 293
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTA 355
+VR VIHY PK++ES+YQE GR GRDG+ S L+Y+ ++ + ES Q+
Sbjct: 294 NVRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTLLFYSFADIIMLSRFASES---GQQEV 350
Query: 356 IMESLLAAQRYCLLTTCRR 374
ME L Q+Y CRR
Sbjct: 351 NMEKLKRMQQYAEADICRR 369
>gi|428178543|gb|EKX47418.1| cpRecQ plastid-targeted DNA helicase [Guillardia theta CCMP2712]
Length = 673
Score = 310 bits (795), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 175/389 (44%), Positives = 236/389 (60%), Gaps = 25/389 (6%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK+ FGYS FR Q++ I+ I +D LVVMATGSGKSLCYQ+P LV +V+SPLIS
Sbjct: 31 LKRCFGYSNFRNGQEEAIRAAIAGQDSLVVMATGSGKSLCYQIPALVKRGIVIVISPLIS 90
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKL-L 123
LM DQV SLK R I+A ++ SV + +L ++TPE A S W L
Sbjct: 91 LMHDQVSSLKARNISATSTNEPDSEYSVFSHG----VRLFYVTPESALGRWKSRWKDLHA 146
Query: 124 KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSL 183
+ G+ L A+DEAHC+SEWGHDFR EY++L +LR + VP +ALTATAT +V+ +II +L
Sbjct: 147 RVGIELIAIDEAHCVSEWGHDFRPEYQRLYELREEVPDVPVMALTATATPRVQDEIIRNL 206
Query: 184 KL-----KNP---YVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSI--IV 233
L P + +FDR NLFY N ++ + +EI+ + IV
Sbjct: 207 SLGSFRSDQPSGLVRVVTTFDRLNLFYSAYERNSQEAI--SVFREIIDGSKQGNPVPAIV 264
Query: 234 YCMTIKDVEEISKALKQLGVKAGT---YHGQMGSKAREEAHRLFIRDEIRVMVATMAFGM 290
Y +T KD E+++ L LG+ + YH M R + H LF++D++ V+VAT AFGM
Sbjct: 265 YALTQKDAEKVADKLVSLGIAQDSVAFYHAGMTDSKRTKIHDLFLKDKLHVVVATTAFGM 324
Query: 291 GIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFY-----CG 345
GIDKPD+RHVIH+G PKT+ESYYQ+SGR GRDG S C L Y+ +F FY G
Sbjct: 325 GIDKPDIRHVIHWGAPKTIESYYQQSGRAGRDGEPSRCTLLYSGQDFMLASFYEKSGSSG 384
Query: 346 ESQTENQRTAIMESLLAAQRYCLLTTCRR 374
E +E R A+ + + ++YC LT+CRR
Sbjct: 385 ELISEIARDALHQGISQMRQYCYLTSCRR 413
>gi|158338684|ref|YP_001519861.1| ATP-dependent DNA helicase RecQ [Acaryochloris marina MBIC11017]
gi|158308925|gb|ABW30542.1| ATP-dependent DNA helicase RecQ [Acaryochloris marina MBIC11017]
Length = 736
Score = 310 bits (794), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 176/385 (45%), Positives = 239/385 (62%), Gaps = 22/385 (5%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK YFGY FR Q+ VI+ ++++D +VVM TG GKSLC+QLP L+ +V+SPLI+
Sbjct: 19 LKHYFGYDQFRVGQRPVIEAALQRQDLMVVMPTGGGKSLCFQLPGLLLPGLTVVISPLIA 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV +L+ I A FL S+ ++ + + +G +LL++ PE+ ++ SF +
Sbjct: 79 LMQDQVTTLQVNDIPATFLNSSIDAATARQRISEIYSGKIKLLYVAPER--LLNESFLNL 136
Query: 122 L----LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
L + G+ FAVDEAHC+SEWGHDFR EY++L ++R VP ALTATATE+VR
Sbjct: 137 LDQVQAQVGLAAFAVDEAHCVSEWGHDFRPEYRRLAEVRQRYTQVPVYALTATATERVRQ 196
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DII L+L+ P+V +ASF+R NL+Y V+ +R Q + D L +EI + G S IVYC++
Sbjct: 197 DIIQQLQLRQPFVHVASFNRPNLYYEVRPKSR-QVYAD-LYREIRQH--GQDSGIVYCLS 252
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
++V EIS L+ G+ A YH M AR FIRD+++VMVAT+AFGMGIDKPDV
Sbjct: 253 RREVNEISARLQADGISALPYHAGMSDSARTLNQERFIRDDVQVMVATVAFGMGIDKPDV 312
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA--------KGDFYCGESQT 349
R VIHY P+ +E YYQESGR GRDG S C L+++ + K D G
Sbjct: 313 RFVIHYNLPRNIEGYYQESGRAGRDGEPSKCLLFFSTKDIHTIEWLIERKADPETGNPLE 372
Query: 350 ENQRTAIMESLLAAQRYCLLTTCRR 374
QR A + L Y T CRR
Sbjct: 373 NEQRIA-RQQLRQVIDYAESTVCRR 396
>gi|109504268|ref|XP_001059940.1| PREDICTED: Werner syndrome ATP-dependent helicase homolog isoform 1
[Rattus norvegicus]
gi|392354016|ref|XP_002728460.2| PREDICTED: Werner syndrome ATP-dependent helicase homolog [Rattus
norvegicus]
Length = 1400
Score = 310 bits (794), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 166/377 (44%), Positives = 233/377 (61%), Gaps = 6/377 (1%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ LK YFG+ F+P Q VI ++E +RD +VVMATG GKSLC+Q PP+ TGK +V+S
Sbjct: 501 INCLKTYFGHCSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVIS 560
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ L+ I A LGSAQ ++ + G ++++++TPE C +
Sbjct: 561 PLISLMEDQVLQLEMSNIPACLLGSAQP-KNILGDIKLGRYRIIYITPE-FCSGNLDLLQ 618
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L G+ L AVDEAHCISEWGHDFR ++ L L+T L VP +AL+ATA+ +R DI
Sbjct: 619 QLDSNIGITLIAVDEAHCISEWGHDFRSSFRTLGSLKTALPLVPVIALSATASSSIREDI 678
Query: 180 INSLKLKNPYVTIASFDRKNLFYGV--KVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
I L LK+P++T FDR NL+ V K N Q LV++ + G I+YC +
Sbjct: 679 IRCLNLKDPHITCTGFDRPNLYLEVERKTGNILQDLKPFLVRKTSSAWEFEGPTIIYCPS 738
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K E+++ L +L V YH M R++ H F+RDEI+ +VAT+AFGMGI+K D+
Sbjct: 739 RKVTEQVTVELGKLNVACQAYHAGMKISERKDIHHRFLRDEIQCVVATIAFGMGINKADI 798
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHYG PK +ESYYQE GR GRDG+ S C L +A ++F E E R +
Sbjct: 799 RKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNTTRNRLIEIHNEKFRLHKL 858
Query: 358 ESLLAAQRYCLLTTCRR 374
+ ++ ++Y + CRR
Sbjct: 859 KMMVKMEKYLHSSRCRR 875
>gi|423270795|ref|ZP_17249766.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL05T00C42]
gi|423274619|ref|ZP_17253565.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL05T12C13]
gi|392698719|gb|EIY91901.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL05T00C42]
gi|392704877|gb|EIY98011.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL05T12C13]
Length = 601
Score = 310 bits (794), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 166/378 (43%), Positives = 235/378 (62%), Gaps = 13/378 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ TLK YFGY FRP Q+++I +I K+D LV+M TG GKS+CYQLP L+ TA+V+S
Sbjct: 1 MIQTLKTYFGYDSFRPLQEEIIHNLISKKDSLVLMPTGGGKSICYQLPALLMEGTAIVIS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L+ GI A L S+ ++ +++ +G +LL+++PEK +S
Sbjct: 61 PLISLMKDQVETLRANGIPAGALNSSNDETENANLRRACISGQLKLLYISPEKL----LS 116
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
LL+ + LFAVDEAHCIS+WGHDFR EY ++ LR VP +ALTATA + R
Sbjct: 117 EADYLLRDMTLSLFAVDEAHCISQWGHDFRPEYARMGFLRNQFPNVPMIALTATADKITR 176
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DI+ L+L+ P + I+SFDR NL VK + + +V I + +G IVYCM
Sbjct: 177 EDIVRQLQLRQPQIFISSFDRPNLSLSVKRGYQPKEKSKAIVDFITRHRGESG--IVYCM 234
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ E +++ L++ G++ G YH + ++ R+E FI D I V+ AT+AFGMGIDK +
Sbjct: 235 SRSKTETVAQMLQKHGIRCGVYHAGLSARQRDETQDDFINDRIEVVCATIAFGMGIDKSN 294
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY PK++ES+YQE GR GRDG+ S L+Y+ + + ES NQ+
Sbjct: 295 VRWVIHYNLPKSIESFYQEIGRAGRDGMPSDTILFYSLGDLILLTKFATES---NQQNIN 351
Query: 357 MESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 352 LEKLNRMQQYAESDICRR 369
>gi|265765824|ref|ZP_06093865.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 2_1_16]
gi|263253492|gb|EEZ24957.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 2_1_16]
Length = 607
Score = 310 bits (794), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 166/378 (43%), Positives = 235/378 (62%), Gaps = 13/378 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ TLK YFGY FRP Q+++I +I K+D LV+M TG GKS+CYQLP L+ TA+V+S
Sbjct: 7 MIQTLKTYFGYDSFRPLQEEIIHNLISKKDSLVLMPTGGGKSICYQLPALLMEGTAIVIS 66
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L+ GI A L S+ ++ +++ +G +LL+++PEK +S
Sbjct: 67 PLISLMKDQVETLRANGIPAGALNSSNDETENANLRRACISGQLKLLYISPEKL----LS 122
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
LL+ + LFAVDEAHCIS+WGHDFR EY ++ LR VP +ALTATA + R
Sbjct: 123 EADYLLRDMTLSLFAVDEAHCISQWGHDFRPEYARMGFLRNQFPNVPMIALTATADKITR 182
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DII L+L+ P + I+SFDR NL VK + + ++ I + +G IVYCM
Sbjct: 183 EDIIRQLQLRQPQIFISSFDRPNLSLSVKRGYQPKEKSKAIIDFITRHRGESG--IVYCM 240
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ E +++ L++ G++ G YH + ++ R+E FI D I V+ AT+AFGMGIDK +
Sbjct: 241 SRSKTETVAQMLQKHGIRCGVYHAGLSARQRDETQDDFINDRIEVVCATIAFGMGIDKSN 300
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY PK++ES+YQE GR GRDG+ S L+Y+ + + ES NQ+
Sbjct: 301 VRWVIHYNLPKSIESFYQEIGRAGRDGMPSDTILFYSLGDLILLTKFATES---NQQNIN 357
Query: 357 MESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 358 LEKLNRMQQYAESDICRR 375
>gi|386812206|ref|ZP_10099431.1| DNA helicase RecQ [planctomycete KSU-1]
gi|386404476|dbj|GAB62312.1| DNA helicase RecQ [planctomycete KSU-1]
Length = 714
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 163/379 (43%), Positives = 234/379 (61%), Gaps = 14/379 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M TL+KYFGY+ F P Q+D+I+ ++ +RD V+M TG GKSLCYQLP L+ +VVS
Sbjct: 1 MYKTLQKYFGYTSFYPLQEDIIKEVLAQRDAFVLMPTGGGKSLCYQLPALLFSGVTIVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIPIS 117
PLI+LM+DQV L GI A F+ S+ + S + K ++ ++L++ PE+ +P
Sbjct: 61 PLIALMKDQVDGLLANGIPAIFINSSLSYSEIDAKRQSLLNNEIKILYIAPER-LFMP-E 118
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
F L + LFA+DE+HCISEWGHDFR EY+QL+ L+ VP +ALTATAT V+
Sbjct: 119 FLQFLQGLKISLFAIDESHCISEWGHDFRPEYRQLEILKEKFPKVPVMALTATATPAVQK 178
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG--AGSIIVYC 235
DII LKL + + ASF+RKNL+Y +K D +IL + S I+YC
Sbjct: 179 DIILQLKLSDCRIFKASFNRKNLYYQIKP-------KDNPYHQILHYLKSRKKDSGIIYC 231
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
+ K VE ++ +L+ G + YH + ++ R E FI D++ ++VAT+AFGMGIDKP
Sbjct: 232 QSRKTVESLTTSLQAEGYRVLPYHAGLPAEVRTENQERFIHDDVEIIVATIAFGMGIDKP 291
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTA 355
DVR+VIHY PK++E YYQE+GR GRDG+ S C L ++ ++ K +++ + EN++
Sbjct: 292 DVRYVIHYDLPKSIEGYYQETGRAGRDGLKSDCILLFSYADKFKIEYFIHQKIDENEKLI 351
Query: 356 IMESLLAAQRYCLLTTCRR 374
+ L YC CRR
Sbjct: 352 AYKQLRHLTNYCEGNICRR 370
>gi|423261207|ref|ZP_17242109.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL07T00C01]
gi|423267342|ref|ZP_17246324.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL07T12C05]
gi|387774449|gb|EIK36560.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL07T00C01]
gi|392698045|gb|EIY91228.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL07T12C05]
Length = 601
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 165/378 (43%), Positives = 234/378 (61%), Gaps = 13/378 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ TLK YFGY FRP Q+++I +I K+D LV+M TG GKS+CYQLP L+ TA+V+S
Sbjct: 1 MIQTLKTYFGYDSFRPLQEEIIHNLISKKDSLVLMPTGGGKSICYQLPALLMEGTAIVIS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L+ GI A L S+ ++ +++ +G +LL+++PEK +S
Sbjct: 61 PLISLMKDQVETLRANGIPAGALNSSNDETENANLRRACISGQLKLLYISPEKL----LS 116
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
LL+ + LFAVDEAHCIS+WGHDFR EY ++ LR VP +ALTATA + R
Sbjct: 117 EADYLLRDMTLSLFAVDEAHCISQWGHDFRPEYARMGFLRNQFPNVPMIALTATADKITR 176
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DI+ L+L+ P + I+SFDR NL VK + + ++ I + +G IVYCM
Sbjct: 177 EDIVRQLQLRQPQIFISSFDRPNLSLSVKRGYQPKEKSKAIIDFITRHRGESG--IVYCM 234
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ E +++ L++ G++ G YH + ++ R E FI D I V+ AT+AFGMGIDK +
Sbjct: 235 SRSKTETVAQMLQKHGIRCGVYHAGLSARQRNETQDDFINDRIEVVCATIAFGMGIDKSN 294
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY PK++ES+YQE GR GRDG+ S L+Y+ + + ES NQ+
Sbjct: 295 VRWVIHYNLPKSIESFYQEIGRAGRDGMPSDTILFYSLGDLILLTKFATES---NQQNIN 351
Query: 357 MESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 352 LEKLNRMQQYAESDICRR 369
>gi|254443570|ref|ZP_05057046.1| ATP-dependent DNA helicase RecQ [Verrucomicrobiae bacterium DG1235]
gi|198257878|gb|EDY82186.1| ATP-dependent DNA helicase RecQ [Verrucomicrobiae bacterium DG1235]
Length = 616
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 167/377 (44%), Positives = 235/377 (62%), Gaps = 15/377 (3%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ LKKYFG+ FRP Q +++ + RD ++ TG GKSLCYQLP +++ +V+SPL
Sbjct: 11 AALKKYFGHDTFRPLQAEIVADALAGRDVFALLPTGGGKSLCYQLPAVLSEGLTVVISPL 70
Query: 63 ISLMQDQVMSLKQRGINAEFLGSA--QTDSSVQ-TKAETGYFQLLFMTPEKACIIPISFW 119
I+LM+DQV L + GI A FL S+ + D++ + K G +Q+L++ PE+ ++ F
Sbjct: 71 IALMKDQVDGLTENGIAATFLNSSLGKKDAAQRYAKLFAGDYQVLYVAPER--LMLGGFL 128
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
L K VC FAVDEAHCISEWGHDFR EY+QL +LR PF+ALTATAT++VR DI
Sbjct: 129 EDLKKWKVCRFAVDEAHCISEWGHDFRPEYRQLAELRKRFPDTPFMALTATATDRVRGDI 188
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAG--SIIVYCMT 237
+ L+L +P +ASF+R NL Y I + Q+ + ++ILK V S I+YC +
Sbjct: 189 VKQLQLHDPTDYVASFNRPNLAY---RIEQKQA----VFRQILKFVKSRPFESGIIYCFS 241
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K E+ + L+Q GV+A YH M R + FIRDE++V+ AT+AFGMGIDKP+V
Sbjct: 242 RKATEQTADRLRQEGVEAIAYHAGMTPLQRAKNQDAFIRDEVKVVCATIAFGMGIDKPNV 301
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R+VIH PK +E YYQE+GR GRDG+ S C +Y++ + AK + E + + +R
Sbjct: 302 RYVIHQDIPKNIEGYYQETGRAGRDGLPSECVMYFSPGDVAKQLNFIAEKEPQ-EREVAK 360
Query: 358 ESLLAAQRYCLLTTCRR 374
E L Y + CRR
Sbjct: 361 EQLRQIVNYAESSRCRR 377
>gi|219853011|ref|YP_002467443.1| ATP-dependent DNA helicase RecQ [Methanosphaerula palustris E1-9c]
gi|219547270|gb|ACL17720.1| ATP-dependent DNA helicase RecQ [Methanosphaerula palustris E1-9c]
Length = 606
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 166/374 (44%), Positives = 231/374 (61%), Gaps = 11/374 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK+Y+GYS F P+QK++I +++ +D L +MATG GKSLCYQLP L G +VVSPLIS
Sbjct: 8 LKRYWGYSSFLPHQKEIIGSVLKGQDTLAIMATGGGKSLCYQLPALCLGGLTVVVSPLIS 67
Query: 65 LMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L +RGI A S+ + + ++ + G +LLF++PE+ + F
Sbjct: 68 LMKDQVDDLNERGILAVAFNSSMEYRVRTKIEADLKNGKIRLLFVSPERC--MQAGFLDL 125
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
+ A + L AVDEAHCISEWGH+FR EY+QL +L+ VP VALTATA +VR DI
Sbjct: 126 IKAAPIRLIAVDEAHCISEWGHNFRPEYRQLAQLKKLFPAVPLVALTATAIPEVRRDICQ 185
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L + + + + SF+RKNL Y +V+ + + L+ L S S I+YCM+ K+
Sbjct: 186 QLGISDAHEFVGSFNRKNLMY--RVVEKKNPKI--LLLTFL-SRHQHESGIIYCMSKKET 240
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
EE+++ L++ G A YH + + R + FI++ I ++ AT+AFGMGIDKPDVR VI
Sbjct: 241 EEVARDLRRRGYNAQAYHAGLSKQVRTKVQDGFIKNTITIVCATIAFGMGIDKPDVRFVI 300
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAK-GDFYCGESQTENQRTAIMESL 360
HY PKT+ESYYQE+GR GRDG S C L+Y+R + A+ + TE A + L
Sbjct: 301 HYDIPKTVESYYQETGRAGRDGRPSECVLFYSRGDIARVRSMLEHDHMTERNLRASLRKL 360
Query: 361 LAAQRYCLLTTCRR 374
YC TCRR
Sbjct: 361 QEMTEYCEAITCRR 374
>gi|354474937|ref|XP_003499686.1| PREDICTED: Werner syndrome ATP-dependent helicase homolog
[Cricetulus griseus]
gi|344242328|gb|EGV98431.1| Werner syndrome ATP-dependent helicase-like [Cricetulus griseus]
Length = 1405
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 165/377 (43%), Positives = 231/377 (61%), Gaps = 6/377 (1%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ LK YFG+ F+P Q VI ++E +RD +VVMATG GKSLC+Q PP+ GK +V+S
Sbjct: 508 INCLKTYFGHCNFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYAGKIGIVIS 567
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ L+ I A LGSAQ+ ++ + G ++++++TPE C +
Sbjct: 568 PLISLMEDQVLQLEMSNIPACLLGSAQS-KNILGDIKLGKYRIIYITPE-FCSGNLDLLR 625
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L G+ L AVDEAHCISEWGHDFR ++ L L+ L VP +AL+ATA+ +R DI
Sbjct: 626 QLDSNIGITLIAVDEAHCISEWGHDFRSSFRTLGSLKIALPLVPVIALSATASSLIREDI 685
Query: 180 INSLKLKNPYVTIASFDRKNLFY--GVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
I L LKNP +T FDR NL+ G K N Q LVQ+ + G I+YC +
Sbjct: 686 IRCLNLKNPQITCTGFDRPNLYLEVGRKTGNILQDLKPFLVQKSSTAWEFEGPTIIYCPS 745
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K E+++ L +L + YH M R++ H F+RDEI+ +VAT+AFGMGI+K D+
Sbjct: 746 RKMTEQVTAELGKLNLACRAYHAGMNINKRKDVHHWFLRDEIQCVVATIAFGMGINKADI 805
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHYG PK +ESYYQE GR GRDG+ S C L +A ++F + E E R +
Sbjct: 806 RKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNLTRHHFLEIHNEKFRLHKL 865
Query: 358 ESLLAAQRYCLLTTCRR 374
+ + ++Y + CRR
Sbjct: 866 KMMAKMEKYLHSSQCRR 882
>gi|73668704|ref|YP_304719.1| ATP-dependent DNA helicase RecQ [Methanosarcina barkeri str.
Fusaro]
gi|72395866|gb|AAZ70139.1| ATP-dependent DNA helicase RecQ [Methanosarcina barkeri str.
Fusaro]
Length = 881
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 167/385 (43%), Positives = 239/385 (62%), Gaps = 20/385 (5%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M S L +YFGY+ FRP Q+++I+ ++E++D V+M TG GKS+CYQLP L+ +VVS
Sbjct: 8 MYSALHQYFGYTSFRPLQEEIIKDVLERKDVFVLMPTGGGKSMCYQLPALLMEGVTVVVS 67
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV L+ GI A + SAQ+ + V+T ++L++ PE+ ++P +
Sbjct: 68 PLISLMKDQVDGLEANGIAAACMNSAQSARENRDVKTAFLENRLKVLYVAPER-LMMPGT 126
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR---TFLLGVPFVALTATATEK 174
+ L K V L A+DEAHCISEWGHDFR EY++L LR T +P +ALTATATE+
Sbjct: 127 L-AFLKKGKVSLLAIDEAHCISEWGHDFRPEYRKLKLLRDPKTGFPDIPIIALTATATER 185
Query: 175 VRIDIINSLKL-----KNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAG 229
VR DII+ L L K PYV ASF+RKNL+Y V+ + ++F E+ + + AG
Sbjct: 186 VREDIISQLNLHLPPEKGPYV--ASFNRKNLYYEVRP--KKETF-SEITDYLRRHRGEAG 240
Query: 230 SIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFG 289
I+YC + VE ++K L G +A YH + R +FI+D++ ++VAT+AFG
Sbjct: 241 --IIYCQSRNSVEALTKKLNLAGFRALPYHAGLSDTERNRNQEMFIKDDVEIIVATIAFG 298
Query: 290 MGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQT 349
MGIDK +VR VIHY P+ LESYYQE+GR GRDG C L+++R + K +++ +
Sbjct: 299 MGIDKSNVRFVIHYDLPRNLESYYQETGRGGRDGSPCECILFFSRGDRFKIEYFISQKTN 358
Query: 350 ENQRTAIMESLLAAQRYCLLTTCRR 374
E ++ + L YC CRR
Sbjct: 359 EKEKDISLVQLRQMVAYCEGNKCRR 383
>gi|254413079|ref|ZP_05026851.1| ATP-dependent DNA helicase RecQ [Coleofasciculus chthonoplastes PCC
7420]
gi|196180243|gb|EDX75235.1| ATP-dependent DNA helicase RecQ [Coleofasciculus chthonoplastes PCC
7420]
Length = 731
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 156/378 (41%), Positives = 236/378 (62%), Gaps = 12/378 (3%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
LK++FGY+ FRP Q+ +++ ++ RD L++M TG GKSLC+QLP L+ +VVSPL
Sbjct: 31 DALKQFFGYTTFRPGQQQIVEEALQNRDLLIIMPTGGGKSLCFQLPALLKPGLTVVVSPL 90
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFW 119
I+LMQDQV +L GI A FL S + +V+++ G +LL++ PE+ + +
Sbjct: 91 IALMQDQVDALVDNGIGATFLNSTLSWDAVRSREMAILNGKIKLLYVAPERLLAERFAPF 150
Query: 120 SKLLKA--GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
+ +++ G+ FAVDEAHC+S WGHDFR EY+Q+ +LR +P +ALTATAT++V+
Sbjct: 151 LEQVRSQVGISAFAVDEAHCVSAWGHDFRPEYRQIKQLRQRYPDIPILALTATATKRVQQ 210
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSV-AGAGSIIVYCM 236
DI+ L L+ P + IASF+R NL+Y ++ R QS+ ++ K V + GS I+YC+
Sbjct: 211 DIVQQLTLRQPSIHIASFNRPNLYYEIQPKQR-QSY-----NQLFKKVQSHKGSGIIYCL 264
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ + V+E++ L++ G+ A YH M R FIRD+++V+VAT+AFGMGI+K D
Sbjct: 265 SRRSVDEVAFRLQKDGISALPYHAGMSDIDRSSNQNRFIRDDVQVIVATIAFGMGINKLD 324
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY P+ LE YYQESGR GRDG + C ++Y + + D+ + ++
Sbjct: 325 VRFVIHYDLPRNLEGYYQESGRAGRDGEPAYCTIFYRPGDVPRLDYLIDQKPDPREQRVA 384
Query: 357 MESLLAAQRYCLLTTCRR 374
+ L + Y T CRR
Sbjct: 385 RQQLQQIRDYAEGTDCRR 402
>gi|294495880|ref|YP_003542373.1| ATP-dependent DNA helicase RecQ [Methanohalophilus mahii DSM 5219]
gi|292666879|gb|ADE36728.1| ATP-dependent DNA helicase RecQ [Methanohalophilus mahii DSM 5219]
Length = 599
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 168/377 (44%), Positives = 225/377 (59%), Gaps = 10/377 (2%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M TL YFGY FRP Q+++IQ ++ K+D V+M TG GKSLCYQLP L+ +VVS
Sbjct: 1 MRQTLYDYFGYDTFRPLQENIIQDVLNKKDVFVLMPTGGGKSLCYQLPSLLMEGVTVVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIPIS 117
PLISLM+DQV L GI A ++ S +S + ++ G LL++ PE+ + S
Sbjct: 61 PLISLMKDQVDRLLSHGIAAAYMNSTLDNSEMSHVKDSLIRGKLDLLYVAPERLAMP--S 118
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
L K V LFAVDEAHCIS+WGHDFR EY++L LR+ VP +ALTATAT V
Sbjct: 119 TLKLLAKVNVNLFAVDEAHCISQWGHDFRPEYRKLGALRSGFPNVPLIALTATATPAVAR 178
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI L + +ASF+R NL+Y VK G++ D+ + L+S + II YC T
Sbjct: 179 DITKQLNMVRSEKYVASFNRSNLYYEVK---SGEN-ADQQITSYLRSHPESCGII-YCQT 233
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K VE ++ LK+LGV A YH M + R A F+ IRV+VAT+AFGMGIDK +V
Sbjct: 234 RKSVEGLAGRLKKLGVNAAFYHAGMSDELRHRAQEKFLDGTIRVVVATVAFGMGIDKSNV 293
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R V+HY P LESYYQ++GR GRDG C L++ R ++ K ++ + ++ +R +
Sbjct: 294 RFVMHYDLPADLESYYQQTGRGGRDGQPCDCILFFKRGDWYKQQYFIEQMSSKKEREIAL 353
Query: 358 ESLLAAQRYCLLTTCRR 374
L YC TCRR
Sbjct: 354 SKLRHMMDYCESVTCRR 370
>gi|397779827|ref|YP_006544300.1| ATP-dependent DNA helicase RecQ [Methanoculleus bourgensis MS2]
gi|396938329|emb|CCJ35584.1| ATP-dependent DNA helicase RecQ [Methanoculleus bourgensis MS2]
Length = 780
Score = 308 bits (788), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 176/389 (45%), Positives = 233/389 (59%), Gaps = 32/389 (8%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ + L+ Y+GY+ F P+Q+++++ I+ KRD L V+ATG GKSLCYQLP LVTG +VVS
Sbjct: 41 LYAALEHYYGYTSFLPFQEEIVRDILRKRDVLAVLATGGGKSLCYQLPALVTGGLTVVVS 100
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSA-QTDSSVQTKA--ETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L +G+ A L S D+ V+T A E G +LL+++PE+ ++
Sbjct: 101 PLISLMKDQVDTLVTQGVPAATLNSTLPYDAMVKTLADLEAGRLRLLYVSPER--VVQPR 158
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
F + L ++GV L AVDEAHCISEWGH FR EY+QL L+ VP +ALTATA +VR
Sbjct: 159 FLAALRESGVTLVAVDEAHCISEWGHQFRPEYRQLSVLKEQFPEVPMIALTATAIPEVRQ 218
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DII L L +P V + S +R+NL Y V G+ + + L+S S IVY +
Sbjct: 219 DIIRQLSLADPAVYVGSSNRENLRYTVA----GKKDAYPQLIDYLRSNPNR-SGIVYFSS 273
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K EEI++ L+ GV+A YH + R FIRDEI V+ AT AFGMGIDKPDV
Sbjct: 274 KKRTEEIAERLRNDGVRALPYHADLPDNYRHRVQEQFIRDEIDVVCATNAFGMGIDKPDV 333
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYA------------RSNFAKGDFYCG 345
R VIHY PK+LE+Y QE+GR GRDG AS C L+Y+ R + + D Y
Sbjct: 334 RFVIHYDMPKSLEAYAQETGRAGRDGEASDCILFYSPGDRRKNQVMLERDSLDRPDLYPV 393
Query: 346 ESQTENQRTAIMESLLAAQRYCLLTTCRR 374
Q N A +C T CRR
Sbjct: 394 AVQKLNDMAA----------FCETTRCRR 412
>gi|393784306|ref|ZP_10372471.1| ATP-dependent DNA helicase RecQ [Bacteroides salyersiae CL02T12C01]
gi|392666082|gb|EIY59599.1| ATP-dependent DNA helicase RecQ [Bacteroides salyersiae CL02T12C01]
Length = 601
Score = 308 bits (788), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 168/379 (44%), Positives = 234/379 (61%), Gaps = 15/379 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ TLK YFGY FRP Q+++IQ +++++D LV+M TG GKS+CYQLP L+ TA+VVS
Sbjct: 1 MIQTLKTYFGYESFRPLQEEIIQNLLDRKDSLVLMPTGGGKSICYQLPALLCEGTAVVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L+ GI A L S+ ++ +++ G +LL+++PEK I I
Sbjct: 61 PLISLMKDQVETLRANGIAAGALNSSNDETENANLRRACIEGKLKLLYISPEK-LITEID 119
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
+ L + LFA+DEAHCIS+WGHDFR EY Q+ L +P +ALTATA + R
Sbjct: 120 YL--LRDMHLSLFAIDEAHCISQWGHDFRPEYAQMGILHQVFPHIPIIALTATADKITRE 177
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRG--QSFVDELVQEILKSVAGAGSIIVYC 235
DII L L +P V I+SFDR NL VK RG Q + E + AG II YC
Sbjct: 178 DIIRQLHLTDPKVFISSFDRPNLSLAVK---RGYQQKEKSRTILEFIDRHAGECGII-YC 233
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
M+ E +++ L++ G++ G YH + ++ R+ FI D I+V+ AT+AFGMGIDK
Sbjct: 234 MSRSKTETVAQMLQKHGIRCGVYHAGLSTQQRDATQDDFINDRIQVVCATIAFGMGIDKS 293
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTA 355
+VR VIHY PK++ES+YQE GR GRDG+ S L+Y+ + + ES NQ++
Sbjct: 294 NVRWVIHYNLPKSIESFYQEIGRAGRDGMPSDTLLFYSLGDLILLTKFATES---NQQSI 350
Query: 356 IMESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 351 NLEKLQRMQQYAEANICRR 369
>gi|198276249|ref|ZP_03208780.1| hypothetical protein BACPLE_02441 [Bacteroides plebeius DSM 17135]
gi|198270691|gb|EDY94961.1| ATP-dependent DNA helicase RecQ [Bacteroides plebeius DSM 17135]
Length = 611
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 166/378 (43%), Positives = 235/378 (62%), Gaps = 13/378 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ TLK YFGY+ FRP Q+ +I I++K+D LV+M TG GKS+CYQLP L+ T +VVS
Sbjct: 5 MLKTLKSYFGYTSFRPLQEKIISTILQKKDALVLMPTGGGKSMCYQLPALLMEGTTVVVS 64
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTD-SSVQTKAE--TGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV SL+ GI A L S D ++ Q E G +LL+++PE+ +S
Sbjct: 65 PLISLMKDQVESLQANGIVARALNSTNDDATNAQLYFECLQGRVKLLYISPERL----MS 120
Query: 118 FWSKLLKA-GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
+ LL+ + LFA+DEAHCIS WGHDFR EY QL +R + VP VALTATA + R
Sbjct: 121 EMNYLLRDINISLFAIDEAHCISHWGHDFRPEYTQLKAIRQYFPNVPVVALTATADKITR 180
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DII L+++NP + I+SFDR NL VK + + + +V+ + + +G I+YCM
Sbjct: 181 EDIIRQLEMRNPEIFISSFDRPNLSLEVKRGYQQKEKIKAIVKFLRRHRNESG--IIYCM 238
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ E++++ L++ G YH M ++ RE FI D ++++ AT+AFGMGIDK +
Sbjct: 239 SRNGTEKVAQLLEKEGFDVAAYHAGMSNEQREITQDDFINDRVQIICATIAFGMGIDKSN 298
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY PK++E++YQE GR GRDG+ S L+Y+ + + ES NQ+
Sbjct: 299 VRWVIHYNLPKSIENFYQEIGRAGRDGLPSETLLFYSFGDIILLSRFAAES---NQQGIN 355
Query: 357 MESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 356 LEKLNRMQQYAESDICRR 373
>gi|74142907|dbj|BAE42489.1| unnamed protein product [Mus musculus]
Length = 862
Score = 306 bits (785), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 159/340 (46%), Positives = 223/340 (65%), Gaps = 6/340 (1%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ LK YFG+S F+P Q VI ++E +RD +VVMATG GKSLC+Q PP+ TGK +V+S
Sbjct: 501 INCLKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVIS 560
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ L+ + A LGSAQ+ ++ + G ++++++TPE C +
Sbjct: 561 PLISLMEDQVLQLELSNVPACLLGSAQS-KNILGDVKLGKYRVIYITPE-FCSGNLDLLQ 618
Query: 121 KLLKA-GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L + G+ L AVDEAHCISEWGHDFR ++ L L+T L VP +AL+ATA+ +R DI
Sbjct: 619 QLDSSIGITLIAVDEAHCISEWGHDFRSSFRMLGSLKTALPLVPVIALSATASSSIREDI 678
Query: 180 INSLKLKNPYVTIASFDRKNLFY--GVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
I+ L LK+P +T FDR NL+ G K N Q LV++ + G I+YC +
Sbjct: 679 ISCLNLKDPQITCTGFDRPNLYLEVGRKTGNILQDLKPFLVRKASSAWEFEGPTIIYCPS 738
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K E+++ L +L + TYH M R++ H F+RDEI+ +VAT+AFGMGI+K D+
Sbjct: 739 RKMTEQVTAELGKLNLACRTYHAGMKISERKDVHHRFLRDEIQCVVATVAFGMGINKADI 798
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNF 337
R VIHYG PK +ESYYQE GR GRDG+ S C L +A ++F
Sbjct: 799 RKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPADF 838
>gi|124002830|ref|ZP_01687682.1| ATP-dependent DNA helicase RecQ [Microscilla marina ATCC 23134]
gi|123992058|gb|EAY31445.1| ATP-dependent DNA helicase RecQ [Microscilla marina ATCC 23134]
Length = 712
Score = 306 bits (785), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 157/335 (46%), Positives = 219/335 (65%), Gaps = 12/335 (3%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+TL++YFGY FRP QKD+I +++ D LV+M TG GKSLCYQ+P L+ A+VVSPL
Sbjct: 8 ATLQQYFGYKQFRPLQKDIIDQVLAGNDALVLMPTGGGKSLCYQVPALMMEGIAIVVSPL 67
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE----TGYFQLLFMTPEKACIIPISF 118
I+LMQDQV +L++ I A F S QT SS Q++ E G +LL+++PEK ++ +F
Sbjct: 68 IALMQDQVEALQRNDIAAAFYNSTQT-SSEQSEIERQCMDGKIKLLYVSPEK--LLSGTF 124
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
L + + LFA+DEAHCIS WGHDFR EY QL L+ VP VALTATA + R D
Sbjct: 125 IEFLQRLQINLFAIDEAHCISSWGHDFRPEYAQLKMLKKVFPSVPVVALTATADKTTRND 184
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+N L L+ P +ASFDR+N+ V + GQ+ + ++++ + +G I+YC++
Sbjct: 185 ILNQLNLQQPETFLASFDRENIRLHV---SPGQNRIKKIIKYLETRPNQSG--IIYCLSR 239
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K E+I++ LK G A YH +M S R + F++D+ ++ AT+AFGMGIDKP+VR
Sbjct: 240 KSTEQIAQKLKDAGFSADYYHAKMDSNRRAAVQQSFLKDDTHIICATIAFGMGIDKPNVR 299
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYA 333
VIHY PK +E YYQE GR GRDG+ S L+Y+
Sbjct: 300 FVIHYNMPKNVEGYYQEIGRAGRDGLKSDAILFYS 334
>gi|359458485|ref|ZP_09247048.1| ATP-dependent DNA helicase RecQ [Acaryochloris sp. CCMEE 5410]
Length = 739
Score = 306 bits (785), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 174/385 (45%), Positives = 240/385 (62%), Gaps = 22/385 (5%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK YFGY FR Q+ VI+ ++++D +VVM TG GKSLC+QLP L+ +V+SPLI+
Sbjct: 19 LKHYFGYDQFRVGQRPVIEAALQQQDLMVVMPTGGGKSLCFQLPGLLLPGLTVVISPLIA 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV +L+ I A FL S+ ++ + + +G +LL++ PE+ ++ SF +
Sbjct: 79 LMQDQVTTLQVNDIPATFLNSSIDAATARQRISEIYSGKIKLLYVAPER--LLHESFLNL 136
Query: 122 L----LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
L + G+ FAVDEAHC+SEWGHDFR EY++L ++R VP LTATATE+VR
Sbjct: 137 LDQVQAQVGLAAFAVDEAHCVSEWGHDFRPEYRRLAEVRQRYAQVPVYTLTATATERVRQ 196
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DII L+L+ P+V +ASF+R NL+Y V+ +R Q++ D L +EI + G S IVYC++
Sbjct: 197 DIIQQLQLRQPFVHVASFNRPNLYYEVRPKSR-QAYAD-LYREIRQH--GQDSGIVYCLS 252
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
++V EIS L+ G++A YH M AR FIRD+++VMVAT+AFGMGIDKPDV
Sbjct: 253 RREVNEISARLQGDGIRALPYHAGMSDSARTLNQERFIRDDVQVMVATVAFGMGIDKPDV 312
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA--------KGDFYCGESQT 349
R VIHY P+ +E YYQE+GR GRDG S C L+++ + K D G
Sbjct: 313 RFVIHYNLPRNIEGYYQEAGRAGRDGEPSKCLLFFSTKDIHTLEWLIERKVDPETGNPLE 372
Query: 350 ENQRTAIMESLLAAQRYCLLTTCRR 374
QR A + L Y T CRR
Sbjct: 373 NEQRIA-RQQLRQVIDYAESTVCRR 396
>gi|387126473|ref|YP_006295078.1| ATP-dependent DNA helicase RecQ [Methylophaga sp. JAM1]
gi|386273535|gb|AFI83433.1| ATP-dependent DNA helicase RecQ [Methylophaga sp. JAM1]
Length = 708
Score = 306 bits (785), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 154/335 (45%), Positives = 216/335 (64%), Gaps = 9/335 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L+ FGYS FR Q+ ++ +I D LV+M TG GKSLCYQLP L+ T +VVSP
Sbjct: 9 LEVLQNVFGYSAFRHNQQTIVDHVIAGGDALVLMPTGGGKSLCYQLPALIRQGTGVVVSP 68
Query: 62 LISLMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LI+LMQDQVM+L+Q G+NA FL S A ++V+T+ E G LL++ PE+ ++
Sbjct: 69 LIALMQDQVMALQQLGVNAAFLNSSLSAAEANAVETQLEAGQIDLLYVAPER--LLNERT 126
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ LL+ V LFA+DEAHC+S+WGHDFR EY+QL L +P VALTATA ++ RI+
Sbjct: 127 LAMLLRIQVSLFAIDEAHCVSQWGHDFRPEYQQLRMLHERFPDIPRVALTATADKRTRIE 186
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
II L L + V + SFDR N+FY + N+ + + + ++ + AG IVYC++
Sbjct: 187 IIEQLNLHDANVYLNSFDRSNIFYAIAEANQAKQQLWQFIETQHANDAG----IVYCLSR 242
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K VE I++ L G A YH + S+ R + + F+R+E ++VAT+AFGMGIDKPDVR
Sbjct: 243 KKVEAIAEWLTDQGRVALPYHAGLSSEMRAKHQQRFLREEGVIIVATIAFGMGIDKPDVR 302
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYA 333
V H PK +E+YYQE+GR GRDG+ + W+ Y
Sbjct: 303 FVAHLNLPKNIEAYYQETGRAGRDGLPANAWMAYG 337
>gi|21227319|ref|NP_633241.1| ATP-dependent DNA helicase [Methanosarcina mazei Go1]
gi|20905673|gb|AAM30913.1| ATP-dependent DNA helicase [Methanosarcina mazei Go1]
Length = 896
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 164/385 (42%), Positives = 240/385 (62%), Gaps = 20/385 (5%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M S L++YFGY+ FRP Q+++I+ +++++D V+M TG GKS+CYQLP L+ +VVS
Sbjct: 25 MHSVLRQYFGYTAFRPLQEEIIRDVLDRKDVFVLMPTGGGKSICYQLPSLLLDGVTVVVS 84
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV L+ GI A + S Q+ + V+ ++L++ PE+ ++P +
Sbjct: 85 PLISLMKDQVDGLEANGIAAACMNSTQSPRENRDVKNAFLENRLKVLYIAPER-LMMPGT 143
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLG---VPFVALTATATEK 174
F + L K V LFA+DEAHCISEWGHDFR EY++L LR G VP +ALTATATE+
Sbjct: 144 F-AFLKKGKVSLFAIDEAHCISEWGHDFRPEYRKLKLLRDPKNGFPDVPVIALTATATER 202
Query: 175 VRIDIINSLKL-----KNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAG 229
V+ DI++ L L K PYV ASF+R NL+Y V+ + +F E+ +L+ AG
Sbjct: 203 VKKDIVSQLGLNIDPEKGPYV--ASFNRSNLYYEVRP--KKDTF-SEITDYLLRHRGEAG 257
Query: 230 SIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFG 289
I+YC + +VE +++ L G +A YH + R +FIRD++ ++VAT+AFG
Sbjct: 258 --IIYCQSRNNVETLTRKLNLAGFRALPYHAGLSDSERSRNQEMFIRDDVDIIVATIAFG 315
Query: 290 MGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQT 349
MGI+K +VR VIHY P+ LESYYQE+GR GRDG C L+++R + K +++ +
Sbjct: 316 MGINKSNVRFVIHYDLPRNLESYYQETGRGGRDGSPCECILFFSRGDRFKIEYFIAQKTN 375
Query: 350 ENQRTAIMESLLAAQRYCLLTTCRR 374
E ++ + L YC CRR
Sbjct: 376 EKEKDISLVQLRQMVAYCEGNKCRR 400
>gi|452209801|ref|YP_007489915.1| ATP-dependent DNA helicase RecQ [Methanosarcina mazei Tuc01]
gi|452099703|gb|AGF96643.1| ATP-dependent DNA helicase RecQ [Methanosarcina mazei Tuc01]
Length = 876
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 164/385 (42%), Positives = 240/385 (62%), Gaps = 20/385 (5%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M S L++YFGY+ FRP Q+++I+ +++++D V+M TG GKS+CYQLP L+ +VVS
Sbjct: 5 MHSVLRQYFGYTAFRPLQEEIIRDVLDRKDVFVLMPTGGGKSICYQLPSLLLDGVTVVVS 64
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV L+ GI A + S Q+ + V+ ++L++ PE+ ++P +
Sbjct: 65 PLISLMKDQVDGLEANGIAAACMNSTQSPRENRDVKNAFLENRLKVLYIAPER-LMMPGT 123
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLG---VPFVALTATATEK 174
F + L K V LFA+DEAHCISEWGHDFR EY++L LR G VP +ALTATATE+
Sbjct: 124 F-AFLKKGKVSLFAIDEAHCISEWGHDFRPEYRKLKLLRDPKNGFPDVPVIALTATATER 182
Query: 175 VRIDIINSLKL-----KNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAG 229
V+ DI++ L L K PYV ASF+R NL+Y V+ + +F E+ +L+ AG
Sbjct: 183 VKKDIVSQLGLNIDPEKGPYV--ASFNRSNLYYEVRP--KKDTF-SEITDYLLRHRGEAG 237
Query: 230 SIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFG 289
I+YC + +VE +++ L G +A YH + R +FIRD++ ++VAT+AFG
Sbjct: 238 --IIYCQSRNNVETLTRKLNLAGFRALPYHAGLSDSERSRNQEMFIRDDVDIIVATIAFG 295
Query: 290 MGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQT 349
MGI+K +VR VIHY P+ LESYYQE+GR GRDG C L+++R + K +++ +
Sbjct: 296 MGINKSNVRFVIHYDLPRNLESYYQETGRGGRDGSPCECILFFSRGDRFKIEYFIAQKTN 355
Query: 350 ENQRTAIMESLLAAQRYCLLTTCRR 374
E ++ + L YC CRR
Sbjct: 356 EKEKDISLVQLRQMVAYCEGNKCRR 380
>gi|298490702|ref|YP_003720879.1| ATP-dependent DNA helicase RecQ ['Nostoc azollae' 0708]
gi|298232620|gb|ADI63756.1| ATP-dependent DNA helicase RecQ ['Nostoc azollae' 0708]
Length = 722
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 179/383 (46%), Positives = 240/383 (62%), Gaps = 26/383 (6%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK +FGY FRP Q+ +I+ ++ RD +VVM TG GKSLC+QLP L+ +VVSPLI+
Sbjct: 11 LKYHFGYDQFRPGQRQIIEDALQNRDLMVVMPTGGGKSLCFQLPALLKSGLTVVVSPLIA 70
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV +L+ I+A FL S+ V+++ E G +LL++ PE+ +I F
Sbjct: 71 LMQDQVEALRNNNISATFLNSSLNFYKVRSREEAIMNGKVRLLYIAPER--LISDKFLPL 128
Query: 122 L----LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
L K G+ FA+DEAHC+SEWGHDFR EY+QL L+ V ALTATAT++VR+
Sbjct: 129 LDVVKEKIGIANFAIDEAHCVSEWGHDFRPEYRQLILLKKRYPDVTTTALTATATDRVRV 188
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DII L LK P V IASF+R NL+Y V+ ++ Q EL+ EI++ G+G I+YC+T
Sbjct: 189 DIIQQLGLKQPSVHIASFNRHNLYYEVR--SKNQRAYAELL-EIVRENKGSG--IIYCLT 243
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K V+E++ L+ + A YH + R + FIRD+IRVMVAT+AFGMGI+KPDV
Sbjct: 244 RKKVDELTFKLQNDKIAALPYHAGLSDDERSKNQTRFIRDDIRVMVATIAFGMGINKPDV 303
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R V+H+ P+ LESYYQESGR GRD S C L+ F+ GD E NQ+T +
Sbjct: 304 RFVVHFDLPRNLESYYQESGRAGRDSEPSRCTLF-----FSFGDVKTIEWSI-NQKTDLQ 357
Query: 358 ESLLAAQR------YCLLTTCRR 374
E L+A Q+ Y T CRR
Sbjct: 358 EKLIAKQQLRQVIDYAEGTDCRR 380
>gi|237723404|ref|ZP_04553885.1| ATP-dependent DNA helicase recQ [Bacteroides sp. 2_2_4]
gi|229447926|gb|EEO53717.1| ATP-dependent DNA helicase recQ [Bacteroides sp. 2_2_4]
Length = 608
Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 170/380 (44%), Positives = 235/380 (61%), Gaps = 17/380 (4%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M TLK YFGY FRP Q+++I+ I+ KRD LV+M TG GKS+CYQLP L+ TA+VVS
Sbjct: 7 MRETLKTYFGYDSFRPLQEEIIRHILNKRDALVLMPTGGGKSICYQLPALLCKGTAVVVS 66
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS-SVQTKAE--TGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L GI A L S+ ++ +VQ + G +LL+++PEK ++
Sbjct: 67 PLISLMKDQVEALLANGIAAGALNSSNDETENVQLRRACVEGRLKLLYISPEKL----LA 122
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
LL+ + LFA+DEAHCIS+WGHDFR EY Q+ L +P VALTATA + R
Sbjct: 123 EKDYLLRDMNISLFAIDEAHCISQWGHDFRPEYTQMGVLHQQFPQIPIVALTATADKITR 182
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVA--GAGSIIVY 234
DI+ L L +P + I+SFDR N+ VK RG E + IL+ + G S I+Y
Sbjct: 183 EDIVRQLHLNHPRIFISSFDRPNISLTVK---RGFQ-AKEKNKAILEFIHRHGGESGIIY 238
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
CM+ E +++ L++ G++ G YH + ++ R+E FI D I+V+ AT+AFGMGIDK
Sbjct: 239 CMSRNKTETVAQMLQKQGIRCGVYHAGLSTQHRDETQNDFINDRIQVVCATIAFGMGIDK 298
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
+VR VIHY PK++ES+YQE GR GRDG+ S L+Y+ + + ES NQ+
Sbjct: 299 SNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSSTVLFYSLGDLILLTKFASES---NQQN 355
Query: 355 AIMESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 356 INLEKLQRMQQYAEADICRR 375
>gi|387793516|ref|YP_006258581.1| ATP-dependent DNA helicase RecQ [Solitalea canadensis DSM 3403]
gi|379656349|gb|AFD09405.1| ATP-dependent DNA helicase RecQ [Solitalea canadensis DSM 3403]
Length = 705
Score = 304 bits (779), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 167/376 (44%), Positives = 224/376 (59%), Gaps = 14/376 (3%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
S LK+YFGY FRP Q+++IQ I++K+D LV+M TG GKS+C+Q+P L+ +V+SPL
Sbjct: 7 SVLKEYFGYDEFRPLQRNIIQSILDKKDTLVLMPTGGGKSICFQVPALLLDGLCVVISPL 66
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEK-ACIIPISF 118
ISLM+DQV +L+ GI A +L S+Q+ + E G +LL+++PEK IP+
Sbjct: 67 ISLMKDQVDALRINGIGAAYLNSSQSFEEEEVVIEDCINGNIKLLYLSPEKLKSSIPM-- 124
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
L + + L A+DEAHCIS WGHDFR EY QL L+ VP VALTATA R D
Sbjct: 125 ---LGRFNIQLLAIDEAHCISSWGHDFRPEYTQLSILKERFSDVPIVALTATADRVTRKD 181
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
II L L P +ASFDR NL VK + + E+VQ I +G I+YC++
Sbjct: 182 IIRQLNLHKPATFVASFDRPNLNLEVKTGIKTRQKDQEIVQFIHSKPNQSG--IIYCLSR 239
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K EE+++ L++ V A YH M + R E FI D ++V+ AT+AFGMGIDK +VR
Sbjct: 240 KTTEELAEKLREHQVNAAAYHAGMSADDRNETQEDFINDRVQVVCATVAFGMGIDKSNVR 299
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
VIHY PK +E YYQE GR GRDG+ S LYY + + +SQ QR +E
Sbjct: 300 WVIHYNLPKNIEGYYQEIGRAGRDGLESETILYYNLVDIVLLTQFAEQSQ---QRELNLE 356
Query: 359 SLLAAQRYCLLTTCRR 374
L Q++ CRR
Sbjct: 357 KLKRIQQFAEADICRR 372
>gi|427388684|ref|ZP_18884382.1| ATP-dependent DNA helicase RecQ [Bacteroides oleiciplenus YIT
12058]
gi|425724657|gb|EKU87532.1| ATP-dependent DNA helicase RecQ [Bacteroides oleiciplenus YIT
12058]
Length = 611
Score = 304 bits (779), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 160/378 (42%), Positives = 234/378 (61%), Gaps = 13/378 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ TLK+YFGY FRP Q+D+I+ +++ RD LV+M TG GKS+CYQLP L+ TA+VVS
Sbjct: 10 MIQTLKRYFGYDTFRPLQEDIIRTLLDGRDALVLMPTGGGKSICYQLPALLCEGTAVVVS 69
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L GI A L S+ ++ +++ G +LL+++PEK I+
Sbjct: 70 PLISLMKDQVEALCANGIAAGALNSSNDETENAALRRSCMEGKLKLLYISPEKL----IA 125
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
+ LL+ + LFA+DEAHCIS+WGHDFR EY Q+ + +P +ALTATA + R
Sbjct: 126 EANYLLRDMHISLFAIDEAHCISQWGHDFRPEYAQMGFMHEMFPNIPIIALTATADKITR 185
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
+DI+ L L P + I+SFDR NL VK + + ++ I + +G I+YCM
Sbjct: 186 VDIVRQLHLNQPKIFISSFDRPNLSLTVKRGYQQKEKSKAILDFIARHPGESG--IIYCM 243
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ E +++ L++ G++ YH + S R+EA FI D ++++ AT+AFGMGIDK +
Sbjct: 244 SRSKTETVAQMLQKQGLRVAVYHAGLSSAQRDEAQNDFINDRVQIVCATIAFGMGIDKSN 303
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY PK++ES+YQE GR GRDG+ S L+Y+ ++ + ES Q+
Sbjct: 304 VRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTMLFYSLADLILLTKFATES---GQQGIN 360
Query: 357 MESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 361 LEKLQRMQQYAEADVCRR 378
>gi|149908521|ref|ZP_01897183.1| ATP-dependent DNA helicase RecQ [Moritella sp. PE36]
gi|149808355|gb|EDM68292.1| ATP-dependent DNA helicase RecQ [Moritella sp. PE36]
Length = 606
Score = 304 bits (779), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 153/373 (41%), Positives = 231/373 (61%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FR Q+DVI + D LV+M TG GKSLCYQ+P LV G +V+SPLIS
Sbjct: 15 LESVFGYQQFRMGQEDVIAHAVAGLDSLVIMPTGGGKSLCYQVPALVLGGLTIVLSPLIS 74
Query: 65 LMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L+ G+ A ++ S+ Q + + T + Q+L+++PE+ + F
Sbjct: 75 LMKDQVDALRASGVAAAYMNSSLARQESAQIYTDLQNNRLQVLYLSPERLMVG--DFLQY 132
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + LFA+DEAHCIS WGHDFR EY +L KL+ VP +ALTATA + R DI+N
Sbjct: 133 LQQFPISLFAIDEAHCISSWGHDFRPEYNELGKLKQLFPHVPMMALTATADDATRADILN 192
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L++ P V+++SFDR N+ Y + + + ++ +D+L + + + +G IVYC + K V
Sbjct: 193 QLQMHEPKVSMSSFDRPNIRYSL--VEKFKA-LDQLKRYVKQQDGVSG--IVYCTSRKRV 247
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
EE+++ L + G A YH + + R++ FIRDE+ ++VAT+AFGMGI+KP+VR V+
Sbjct: 248 EEVAEGLARAGFDAKPYHAGLSQQERQDTQETFIRDELDIVVATVAFGMGINKPNVRFVV 307
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
HY PK +ESYYQE+GR GRDG+ + L + ++ + + +++ E Q+ M L
Sbjct: 308 HYDLPKNIESYYQETGRAGRDGLPAEALLMFDPADIMRVRYMVEQTENEQQQRVEMHKLN 367
Query: 362 AAQRYCLLTTCRR 374
+ TCRR
Sbjct: 368 TMVAFAEAQTCRR 380
>gi|449676970|ref|XP_002163880.2| PREDICTED: uncharacterized protein LOC100213322 [Hydra
magnipapillata]
Length = 802
Score = 304 bits (778), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 164/379 (43%), Positives = 229/379 (60%), Gaps = 20/379 (5%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRII-EKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ LK+YFG+S FRP Q +I+ +I +K+D V PP+ T A+VVS
Sbjct: 410 INILKEYFGFSKFRPMQWKIIRSVIYDKQDNCV-------------FPPVFTHGVAIVVS 456
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV +L INA +LGSAQTDS V +K GY++L+++TPE SF
Sbjct: 457 PLISLMEDQVQALNVANINACYLGSAQTDSKVLSKVFDGYYRLVYVTPE-YITNSESFLK 515
Query: 121 KLLKA-GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
L K G+ L A+DEAHC+S+WGHDFRL Y++L +R + VP +ALTATAT VR DI
Sbjct: 516 DLDKKLGLTLVAIDEAHCVSQWGHDFRLSYRKLHLIRKLIPSVPIIALTATATPLVRNDI 575
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKV-INRGQSFVDELVQEILKSVAG---AGSIIVYC 235
N+L ++ + FDRKNL+ V+ ++ +++E L V G+ IVYC
Sbjct: 576 CNNLLMRKAIIRCTGFDRKNLYLEVRNKVSAHHDLTSLMIEENLNGVRKYRFCGTTIVYC 635
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
T K VEEI+ L G+ YH + R++ H FIRDE+ +VAT+AFGMGIDKP
Sbjct: 636 PTKKKVEEIANTLIGFGLTCEPYHAGLTLPQRKKTHNKFIRDELDCIVATVAFGMGIDKP 695
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTA 355
D+R VIHYG P+ +ESYYQE GR GRDG S C+ +Y ++FA ++ E +
Sbjct: 696 DIRMVIHYGAPRDIESYYQEIGRAGRDGQPSFCYAFYNCADFAINRYFLAEVTDPKFKEY 755
Query: 356 IMESLLAAQRYCLLTTCRR 374
E + ++Y + ++CRR
Sbjct: 756 KNEMITKMEQYLMTSSCRR 774
>gi|149057893|gb|EDM09136.1| rCG43045, isoform CRA_b [Rattus norvegicus]
Length = 1335
Score = 304 bits (778), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 162/358 (45%), Positives = 224/358 (62%), Gaps = 6/358 (1%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ LK YFG+ F+P Q VI ++E +RD +VVMATG GKSLC+Q PP+ TGK +V+S
Sbjct: 501 INCLKTYFGHCSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVIS 560
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ L+ I A LGSAQ ++ + G ++++++TPE C +
Sbjct: 561 PLISLMEDQVLQLEMSNIPACLLGSAQP-KNILGDIKLGRYRIIYITPE-FCSGNLDLLQ 618
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L G+ L AVDEAHCISEWGHDFR ++ L L+T L VP +AL+ATA+ +R DI
Sbjct: 619 QLDSNIGITLIAVDEAHCISEWGHDFRSSFRTLGSLKTALPLVPVIALSATASSSIREDI 678
Query: 180 INSLKLKNPYVTIASFDRKNLFYGV--KVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
I L LK+P++T FDR NL+ V K N Q LV++ + G I+YC +
Sbjct: 679 IRCLNLKDPHITCTGFDRPNLYLEVERKTGNILQDLKPFLVRKTSSAWEFEGPTIIYCPS 738
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K E+++ L +L V YH M R++ H F+RDEI+ +VAT+AFGMGI+K D+
Sbjct: 739 RKVTEQVTVELGKLNVACQAYHAGMKISERKDIHHRFLRDEIQCVVATIAFGMGINKADI 798
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTA 355
R VIHYG PK +ESYYQE GR GRDG+ S C L +A ++F S ++ TA
Sbjct: 799 RKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNTTRLNHCSSANNSEDTA 856
>gi|293373225|ref|ZP_06619587.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus SD CMC 3f]
gi|292631873|gb|EFF50489.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus SD CMC 3f]
Length = 550
Score = 303 bits (777), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 170/380 (44%), Positives = 235/380 (61%), Gaps = 17/380 (4%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M TLK YFGY FRP Q+++I+ I+ KRD LV+M TG GKS+CYQLP L+ TA+VVS
Sbjct: 12 MRETLKTYFGYDSFRPLQEEIIRHILNKRDALVLMPTGGGKSICYQLPALLCKGTAVVVS 71
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS-SVQTKAE--TGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L GI A L S+ ++ +VQ + G +LL+++PEK ++
Sbjct: 72 PLISLMKDQVEALLANGIAAGALNSSNDETENVQLRRACVEGRLKLLYISPEKL----LA 127
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
LL+ + LFA+DEAHCIS+WGHDFR EY Q+ L +P VALTATA + R
Sbjct: 128 EKDYLLRDMNISLFAIDEAHCISQWGHDFRPEYTQMGVLHQQFPQIPIVALTATADKITR 187
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVA--GAGSIIVY 234
DI+ L L +P + I+SFDR N+ VK RG E + IL+ + G S I+Y
Sbjct: 188 EDIVRQLHLNHPRIFISSFDRPNISLTVK---RGFQ-AKEKNKAILEFIHRHGGESGIIY 243
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
CM+ E +++ L++ G++ G YH + ++ R+E FI D I+V+ AT+AFGMGIDK
Sbjct: 244 CMSRNKTETVAQMLQKQGIRCGVYHAGLSTQHRDETQNDFINDRIQVVCATIAFGMGIDK 303
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
+VR VIHY PK++ES+YQE GR GRDG+ S L+Y+ + + ES NQ+
Sbjct: 304 SNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSSTVLFYSLGDLILLTKFASES---NQQN 360
Query: 355 AIMESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 361 INLEKLQRMQQYAEADICRR 380
>gi|443324439|ref|ZP_21053192.1| ATP-dependent DNA helicase RecQ [Xenococcus sp. PCC 7305]
gi|442795958|gb|ELS05292.1| ATP-dependent DNA helicase RecQ [Xenococcus sp. PCC 7305]
Length = 709
Score = 303 bits (777), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 161/381 (42%), Positives = 236/381 (61%), Gaps = 14/381 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ S LK +FGY FR Q+ +I+ + +D LV+M TG GKSLC+QLP L+ +VVS
Sbjct: 5 LESALKHFFGYDSFRAGQRKIIEEALNNQDLLVIMPTGGGKSLCFQLPALLKEGLTIVVS 64
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIPIS 117
PLI+LM+DQV +L+ GI A FL S + +++ E G +LL++ PE+ ++
Sbjct: 65 PLIALMKDQVDALQDNGIGATFLNSTLDYAEGRSRQEAILAGKIKLLYVAPER--LLTEK 122
Query: 118 FWSKLLKA----GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATE 173
F S LL+ G+ A+DEAHC+SEWGHDFR EY+QL +LR+ P A TATAT+
Sbjct: 123 FRSFLLRVANGLGLNAIAIDEAHCVSEWGHDFRPEYRQLKQLRSQFPQTPIFAFTATATK 182
Query: 174 KVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIV 233
+V+ DII L L++ V +ASF+R NL Y VK ++ + +L+++I + +GS IV
Sbjct: 183 RVQDDIIQQLGLRDANVHLASFNRPNLHYEVKSKDKNSYY--QLLKDIRRQ---SGSGIV 237
Query: 234 YCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGID 293
YC++ + VEEI+ LK G+ A YH + ++ R F+RD+ RV+VAT+AFGMGI+
Sbjct: 238 YCLSRRRVEEIALKLKHDGIDALPYHAGLEAEVRSHNQTRFLRDDARVIVATVAFGMGIN 297
Query: 294 KPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQR 353
KPDVR V H+ P++LES+YQESGR GRDG + L+++ + K D+ + N++
Sbjct: 298 KPDVRFVFHFDLPRSLESFYQESGRAGRDGETAKSTLFFSFGDIKKVDYLIEQKPDPNEQ 357
Query: 354 TAIMESLLAAQRYCLLTTCRR 374
+ L Y T CRR
Sbjct: 358 RIARQQLNQVIDYAEGTVCRR 378
>gi|395645903|ref|ZP_10433763.1| ATP-dependent DNA helicase RecQ [Methanofollis liminatans DSM 4140]
gi|395442643|gb|EJG07400.1| ATP-dependent DNA helicase RecQ [Methanofollis liminatans DSM 4140]
Length = 724
Score = 303 bits (777), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 163/378 (43%), Positives = 229/378 (60%), Gaps = 11/378 (2%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ L++Y+GY+ F PYQK++I +++ D L VMATG GKSLCYQLP LV G +V+S
Sbjct: 4 ITELLQRYWGYTSFLPYQKEIITSVLDGHDTLAVMATGGGKSLCYQLPALVLGGLTIVIS 63
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPIS 117
PLI+LM++QV L +RGI A S + V+ + ++LF++PEK C+ P S
Sbjct: 64 PLIALMKNQVDDLNERGIRAVAYNSTLDYRERVEVERGLQNNTVRMLFISPEK-CMQP-S 121
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
F S + + V L A+DEAHCISEWGH+FR EY+QL LR VP VALTATA VR
Sbjct: 122 FLSFINRFPVRLIAIDEAHCISEWGHNFRPEYRQLSALREHFPPVPIVALTATAIPAVRE 181
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI L+L + I SF+R NL Y V N+ F+ + + + S I+YC++
Sbjct: 182 DICTQLQLSDVREYIGSFNRPNLSYRVVPKNKPVEFILDYIGQHPND-----SGIIYCLS 236
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K E++++ L + G A YH + + R++ FI+D+I ++ AT+AFGMGIDKPDV
Sbjct: 237 RKATEDLAETLVEHGHMASAYHAGLLPEVRKKVQEAFIKDDISIICATVAFGMGIDKPDV 296
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYC-GESQTENQRTAI 356
R+VIH+ PK++E+YYQESGR GRDG C L Y+R + AK + + Q E Q
Sbjct: 297 RYVIHHDLPKSVEAYYQESGRAGRDGQPGECILLYSRGDLAKVRYLLEHDDQDEEQSGIA 356
Query: 357 MESLLAAQRYCLLTTCRR 374
+ + YC +CRR
Sbjct: 357 FKKMQEVVDYCETNSCRR 374
>gi|440907539|gb|ELR57678.1| Werner syndrome ATP-dependent helicase [Bos grunniens mutus]
Length = 1430
Score = 303 bits (777), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 163/379 (43%), Positives = 235/379 (62%), Gaps = 10/379 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ LK YFG+S F+P Q VI ++E +RD +VVM TG GKSLC+Q PP+ G LV+S
Sbjct: 529 INCLKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMTTGYGKSLCFQYPPVYAGGIGLVIS 588
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ L+ I A FLGSAQ+ + V+ + G ++++++TPE C +
Sbjct: 589 PLISLMEDQVLQLEISSIPACFLGSAQSKNVVED-IKLGKYRIVYLTPE-FCSGNLELLR 646
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L G+ L AVDEAHCISEWGHDFR ++ L L+ VP VALTATA VR DI
Sbjct: 647 QLEANIGITLIAVDEAHCISEWGHDFRNSFRDLGCLKAEFPKVPIVALTATAGSSVREDI 706
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGA----GSIIVYC 235
+ L LK+P +T FDR NL+ ++V + + +L Q ++ + A G I+YC
Sbjct: 707 VCCLNLKDPQITCTGFDRPNLY--LEVGRKTGDILQDLKQFLVCKSSSAWEFEGPTIIYC 764
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
+ K E+++ LK+L + GTYH + R++ H F+RDEI+ ++AT+AFGMGI+K
Sbjct: 765 PSRKMTEQVTAELKKLKLACGTYHAGLSINLRKQVHHRFMRDEIQCVIATVAFGMGINKA 824
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTA 355
D+R VIHYG PK +ESYYQE GR GRDG+ S C + +A ++ E + E R
Sbjct: 825 DIRQVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPADMNLNRCLLSEIRNEKFRLY 884
Query: 356 IMESLLAAQRYCLLTTCRR 374
++ + ++Y + CRR
Sbjct: 885 KLKMMGKMEKYLYSSKCRR 903
>gi|297307109|ref|NP_001137329.2| Werner syndrome ATP-dependent helicase [Bos taurus]
Length = 1404
Score = 303 bits (776), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 163/379 (43%), Positives = 235/379 (62%), Gaps = 10/379 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ LK YFG+S F+P Q VI ++E +RD +VVM TG GKSLC+Q PP+ G LV+S
Sbjct: 503 INCLKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMTTGYGKSLCFQYPPVYAGGIGLVIS 562
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ L+ I A FLGSAQ+ + V+ + G ++++++TPE C +
Sbjct: 563 PLISLMEDQVLQLEISSIPACFLGSAQSKNVVED-IKLGKYRIVYLTPE-FCSGNLELLR 620
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L G+ L AVDEAHCISEWGHDFR ++ L L+ VP VALTATA VR DI
Sbjct: 621 QLEANIGITLIAVDEAHCISEWGHDFRNSFRDLGCLKAEFPKVPIVALTATAGSSVREDI 680
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGA----GSIIVYC 235
+ L LK+P +T FDR NL+ ++V + + +L Q ++ + A G I+YC
Sbjct: 681 VCCLNLKDPQITCTGFDRPNLY--LEVGRKTGDILQDLKQFLVCKSSSAWEFEGPTIIYC 738
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
+ K E+++ LK+L + GTYH + R++ H F+RDEI+ ++AT+AFGMGI+K
Sbjct: 739 PSRKMTEQVTAELKKLKLACGTYHAGLSINLRKQVHHRFMRDEIQCVIATVAFGMGINKA 798
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTA 355
D+R VIHYG PK +ESYYQE GR GRDG+ S C + +A ++ E + E R
Sbjct: 799 DIRQVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPADMNLNRCLLSEIRNEKFRLY 858
Query: 356 IMESLLAAQRYCLLTTCRR 374
++ + ++Y + CRR
Sbjct: 859 KLKMMGKMEKYLYSSKCRR 877
>gi|341892349|gb|EGT48284.1| hypothetical protein CAEBREN_31081 [Caenorhabditis brenneri]
Length = 1069
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 160/382 (41%), Positives = 240/382 (62%), Gaps = 13/382 (3%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
++ L +++G+ FR Q DV++ ++ +D V+M+TG GKS+CYQLP L+ +VVSP
Sbjct: 209 LNALNEFYGHKGFREKQWDVVRSVLAGKDQFVLMSTGYGKSVCYQLPSLLLNSMTVVVSP 268
Query: 62 LISLMQDQVMSLKQRGINA-EFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
LISLM DQV +L +GI+A + G + + + ++M+PE ++
Sbjct: 269 LISLMNDQVTTLVAKGIDAVKLDGDSMQKEWDRVSNNVHRIRFIYMSPE---MVTSQKGL 325
Query: 121 KLL---KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR--TFLLGVPFVALTATATEKV 175
+LL + + L A+DEAHC+S+WGHDFR Y+ L +R + L VP +ALTATAT +V
Sbjct: 326 ELLSHSREHLSLLAIDEAHCVSQWGHDFRNSYRHLAAIRNRSDLCNVPMIALTATATVRV 385
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQ-EILKSVAGAGSIIVY 234
R D+I +L+L+NP +T SFDRKNL+ V + + E +Q + +K G I+Y
Sbjct: 386 RDDVIENLRLRNPNITTTSFDRKNLYISVHNSKDLATDMAEYLQTDEVKGRHFGGPTIIY 445
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C T + V++++ AL+++GV++ YH + RE+AH F+RD+I +VAT+AFGMGIDK
Sbjct: 446 CQTKQMVDDVNTALRRIGVRSAHYHAGLTKNQREKAHTEFMRDKITTIVATVAFGMGIDK 505
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
PDVR+VIHYGCPK +ESYYQE GR GRDG SVC +++A + A F +Q + +
Sbjct: 506 PDVRNVIHYGCPKDIESYYQEIGRAGRDGAPSVCRVFWAPKDLATIKFKLRNAQLKEEVI 565
Query: 355 AIMESLLAAQRYCLLTT--CRR 374
+ +L+ Q +LTT CRR
Sbjct: 566 ENL-NLMLRQLELVLTTVGCRR 586
>gi|384108557|ref|ZP_10009450.1| ATP-dependent DNA helicase RecQ [Treponema sp. JC4]
gi|383869944|gb|EID85550.1| ATP-dependent DNA helicase RecQ [Treponema sp. JC4]
Length = 656
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 226/373 (60%), Gaps = 8/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L FGY FRP QK++IQ I+ K+D L VM TG GKS+CYQ+P L+ +VVSPLIS
Sbjct: 24 LNTVFGYEAFRPSQKNIIQSILNKKDTLAVMPTGGGKSICYQIPALIMEGITIVVSPLIS 83
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIPISFWSK 121
LMQDQV +L+ GI++ FL SA E G ++++++PE I
Sbjct: 84 LMQDQVAALEAWGIHSVFLNSALESKEYFKAIEDIIRGDVKIVYLSPEGLSTGRIRELFS 143
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
V VDEAHC+S+WGHDFR +Y ++ +R + VALTATAT+ VR DII
Sbjct: 144 QNNLQVSCITVDEAHCVSQWGHDFRPDYMEISTIRRYFPDAVMVALTATATDHVRQDIIK 203
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
+L +K P V I+SF+R+N+F V+ RGQ + +++ I K +G IVYC + K V
Sbjct: 204 NLMMKEPAVFISSFNRENIFLEVQPKGRGQEAIHQVISYIEKHKGESG--IVYCNSRKQV 261
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
+E++ L + G YH + + R + LF++DEI++MVAT+AFGMGIDKP+VR+VI
Sbjct: 262 DELTDILSTMNFSVGNYHAGLPDEVRAQNQELFVKDEIQIMVATIAFGMGIDKPNVRYVI 321
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
++ PK++E YYQE GR GRDG+ S L Y+ ++ K ++ + Q +++S++
Sbjct: 322 NFDLPKSIEEYYQEIGRAGRDGLPSSALLLYSMADIHKIRWFFEDCANPEQAENLLQSMV 381
Query: 362 AAQRYCLLTTCRR 374
++ TCRR
Sbjct: 382 ---KFAGSNTCRR 391
>gi|160886583|ref|ZP_02067586.1| hypothetical protein BACOVA_04594 [Bacteroides ovatus ATCC 8483]
gi|423289735|ref|ZP_17268585.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus CL02T12C04]
gi|156108468|gb|EDO10213.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus ATCC 8483]
gi|392667446|gb|EIY60956.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus CL02T12C04]
Length = 608
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 169/380 (44%), Positives = 236/380 (62%), Gaps = 17/380 (4%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M TLK YFGY FRP Q+++I+ I+ K+D LV+M TG GKS+CYQLP L+ TA+VVS
Sbjct: 7 MRETLKTYFGYDSFRPLQEEIIRHILNKQDALVLMPTGGGKSICYQLPALLCEGTAVVVS 66
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS-SVQTKAE--TGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L GI A L S+ ++ +VQ + G +LL+++PEK ++
Sbjct: 67 PLISLMKDQVEALLANGIAAGALNSSNDETENVQLRRACVEGRLKLLYISPEKL----LA 122
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
LL+ + LFA+DEAHCIS+WGHDFR EY Q+ L +P VALTATA + R
Sbjct: 123 EKDYLLRDMNISLFAIDEAHCISQWGHDFRPEYTQMGVLHQQFPQIPIVALTATADKITR 182
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVA--GAGSIIVY 234
DI+ L L +P + I+SFDR N+ VK RG E + IL+ + G S I+Y
Sbjct: 183 EDIVRQLHLNHPRIFISSFDRPNISLTVK---RGFQ-AKEKNKAILEFIHRHGGESGIIY 238
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
CM+ E +++ L++ G++ G YH + ++ R+E FI D I+V+ AT+AFGMGIDK
Sbjct: 239 CMSRNKTETVAQMLQKQGIRCGVYHAGLSTQHRDETQNDFINDRIQVVCATIAFGMGIDK 298
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
+VR VIHY PK++ES+YQE GR GRDG+ S L+Y+ + + ES NQ++
Sbjct: 299 SNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSSTVLFYSLGDLILLTKFASES---NQQS 355
Query: 355 AIMESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 356 INLEKLQRMQQYAEADICRR 375
>gi|427722202|ref|YP_007069479.1| ATP-dependent DNA helicase RecQ [Leptolyngbya sp. PCC 7376]
gi|427353922|gb|AFY36645.1| ATP-dependent DNA helicase RecQ [Leptolyngbya sp. PCC 7376]
Length = 715
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 164/379 (43%), Positives = 223/379 (58%), Gaps = 9/379 (2%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ + LK +FGY FRP QK VI+ ++ RD L +M TG+GKS+C+QLP L+ +V+S
Sbjct: 7 LEAALKHFFGYESFRPGQKTVIEAALQNRDVLALMPTGAGKSICFQLPALLKSGLTVVIS 66
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPI- 116
PLI+LMQDQV SL GI A FL S + +++ + G +LL++ PE+
Sbjct: 67 PLIALMQDQVDSLTDNGIGATFLNSTLNLNQARSRIQAILNGKIKLLYVAPERLFNEGFQ 126
Query: 117 SFWSKLLKA-GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
F + + + G+ F VDEAHC+SEWGHDFR EY+QL +LR VP A TATATE+V
Sbjct: 127 EFLNDVTDSVGLSGFVVDEAHCVSEWGHDFRPEYRQLARLRRNYPQVPCHAFTATATERV 186
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYC 235
R DII L L P SF+R NL+Y +VI + D++++ K +G I+YC
Sbjct: 187 RQDIITQLALHTPSFHCTSFNRPNLYY--EVIPKSSRSYDQVLKYTRKHRGKSG--IIYC 242
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
+ K V+EIS LK G+ A YH M KAR FIRD++ V+VAT+AFGMGI+KP
Sbjct: 243 SSRKKVDEISDRLKNDGINALPYHAGMSDKARASHQDQFIRDDVPVIVATIAFGMGINKP 302
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTA 355
DVR V+HY P LE YYQESGR GRD + C L Y+ + K +++ E ++
Sbjct: 303 DVRFVLHYDLPGNLERYYQESGRAGRDNEPADCALLYSVGDIKKAEYFIELKDDEQEKRV 362
Query: 356 IMESLLAAQRYCLLTTCRR 374
+ L Y CRR
Sbjct: 363 AYQQLQKMIDYAEGIECRR 381
>gi|393908486|gb|EJD75078.1| CBR-WRN-1 protein [Loa loa]
Length = 1137
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 164/375 (43%), Positives = 230/375 (61%), Gaps = 9/375 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LKK+FG++ FRP Q VIQ + +D +V+M+TG GKS+CYQLP L T K +V+SPLIS
Sbjct: 318 LKKFFGHNSFRPLQWTVIQNALSGKDQIVMMSTGYGKSVCYQLPSLYTEKLTIVISPLIS 377
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLK 124
LM DQV + + GI A + + Q+ + +LL++TPE A + K ++
Sbjct: 378 LMNDQVENARSNGIQAACVNGETNLNEQQSIFASNNLRLLYITPEFA--VHCGSLLKHIR 435
Query: 125 AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLG--VPFVALTATATEKVRIDIINS 182
+ L AVDEAHC+SEWGH+FR Y+QL K+R +L G VP +ALTAT+TE+VR DI +S
Sbjct: 436 KDINLLAVDEAHCVSEWGHEFRPSYRQLAKIR-YLFGKNVPVMALTATSTEQVRTDIASS 494
Query: 183 LKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVE 242
L+L P +T+A DR NL+ V+ + + L ++ G I+YC T V+
Sbjct: 495 LELHQPVITLAPLDRPNLYLSVRTPTSLEGLLHLLSEDERNGKHFNGPTIIYCSTRILVD 554
Query: 243 EISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIH 302
E+ + L + GV+ YH M + AR +AH F++D I ++AT+AFGMGIDK DVR+VIH
Sbjct: 555 EVYEYLSKEGVQCTRYHAGMSTVARRKAHECFMKDRITTIIATVAFGMGIDKADVRNVIH 614
Query: 303 YGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYC--GE-SQTENQRTAIMES 359
YG PK +ESYYQE GR GRDG S +++ K YC GE S EN + ++E
Sbjct: 615 YGAPKNMESYYQEIGRAGRDGCPSKSIVFFKDQELTKHR-YCILGEQSWKENYKKHLLEM 673
Query: 360 LLAAQRYCLLTTCRR 374
L +R+ +CRR
Sbjct: 674 LSLMERFLHAESCRR 688
>gi|254491083|ref|ZP_05104264.1| ATP-dependent DNA helicase RecQ [Methylophaga thiooxidans DMS010]
gi|224463596|gb|EEF79864.1| ATP-dependent DNA helicase RecQ [Methylophaga thiooxydans DMS010]
Length = 708
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 163/377 (43%), Positives = 227/377 (60%), Gaps = 10/377 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
++ L+ FGY FR Q+ +++ +I D LV+M TG GKSLCYQ+P LV TA+VVSP
Sbjct: 9 LNVLQSIFGYDAFRHNQQAIVEHVISGGDALVLMPTGGGKSLCYQIPALVRSGTAVVVSP 68
Query: 62 LISLMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LI+LMQDQVM+LKQ G+ A FL S A V+ + E G LL++ PE+ ++
Sbjct: 69 LIALMQDQVMALKQLGVKAAFLNSSLSAAQARDVEQQLEAGQIDLLYVAPER--LLGERM 126
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
S L + V LFA+DEAHC+S+WGHDFR EY+QL L VP +ALTATA ++ RI+
Sbjct: 127 LSFLERLPVALFAIDEAHCVSQWGHDFRPEYQQLRILHERFPSVPRIALTATADKRTRIE 186
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
II LKL+ V + SFDR N+FY + + + + + +Q + AG IVYC++
Sbjct: 187 IIEQLKLQGAEVYLNSFDRHNIFYAIAEARQAKQQLWDFIQNQHANDAG----IVYCLSR 242
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K VE ++ L + G A YH + ++ R + F+R+E ++VAT+AFGMGIDKPDVR
Sbjct: 243 KKVEATAQWLSEQGRIALPYHAGLPAELRAHTQQRFLREEGIIIVATIAFGMGIDKPDVR 302
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQT-ENQRTAIM 357
V H PK +E+YYQE+GR GRDG+ + W+ Y + + +SQ E +
Sbjct: 303 FVAHLNLPKNIEAYYQETGRAGRDGLPANAWMAYGLQDVITLRQFMQDSQAPELIKRVEH 362
Query: 358 ESLLAAQRYCLLTTCRR 374
L A C L TCRR
Sbjct: 363 HKLEAMLGLCELITCRR 379
>gi|160888701|ref|ZP_02069704.1| hypothetical protein BACUNI_01119 [Bacteroides uniformis ATCC 8492]
gi|156861600|gb|EDO55031.1| ATP-dependent DNA helicase RecQ [Bacteroides uniformis ATCC 8492]
Length = 603
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 161/377 (42%), Positives = 233/377 (61%), Gaps = 11/377 (2%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ TLK YFGY FRP Q+D+I+ +++++D LV+M TG GKS+CYQLP L++ TA+VVS
Sbjct: 1 MLQTLKTYFGYDSFRPLQEDIIRHLMDRKDALVLMPTGGGKSICYQLPALLSEGTAVVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L GI A L S ++ S++ G +LL+++PEK ++ +
Sbjct: 61 PLISLMKDQVETLCANGIAAGALNSNNDETENASLRRACMEGKLKLLYISPEK-LLVEAN 119
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
+ L + LFA+DEAHCIS+WGHDFR EY Q+ L VP +ALTATA + R
Sbjct: 120 YL--LRDMHISLFAIDEAHCISQWGHDFRPEYTQMGILHQLFPQVPIIALTATADKITRE 177
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DII L L P + I+SFDR NL VK + + ++ I + +G I+YCM+
Sbjct: 178 DIIKQLHLNQPRIFISSFDRPNLSLTVKRGYQQKEKSKAILDFIARHPGESG--IIYCMS 235
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
E +++ L++ G+K+ YH + R+EA FI D ++V+ AT+AFGMGIDK +V
Sbjct: 236 RSKAETVAQMLQKQGIKSAVYHAGLSPARRDEAQDDFINDRVQVVCATIAFGMGIDKSNV 295
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHY PK++ES+YQE GR GRDG+ S L+Y+ ++ + +S Q++ +
Sbjct: 296 RWVIHYNLPKSIESFYQEIGRAGRDGMPSDTLLFYSLADLILLTKFATDS---GQQSINL 352
Query: 358 ESLLAAQRYCLLTTCRR 374
E L Q+Y CRR
Sbjct: 353 EKLQRMQQYAEADICRR 369
>gi|336417153|ref|ZP_08597482.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus 3_8_47FAA]
gi|423298263|ref|ZP_17276322.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus CL03T12C18]
gi|335936778|gb|EGM98696.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus 3_8_47FAA]
gi|392663679|gb|EIY57227.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus CL03T12C18]
Length = 608
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 169/380 (44%), Positives = 235/380 (61%), Gaps = 17/380 (4%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M TLK YFGY FRP Q+++I+ I+ K+D LV+M TG GKS+CYQLP L+ TA+VVS
Sbjct: 7 MRETLKTYFGYDSFRPLQEEIIRHILNKQDALVLMPTGGGKSICYQLPALLCEGTAVVVS 66
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS-SVQTKAE--TGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L GI A L S+ ++ +VQ + G +LL+++PEK ++
Sbjct: 67 PLISLMKDQVEALLANGIAAGALNSSNDETENVQLRRACVEGRLKLLYISPEKL----LA 122
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
LL+ + LFA+DEAHCIS+WGHDFR EY Q+ L +P VALTATA + R
Sbjct: 123 EKDYLLRDMNISLFAIDEAHCISQWGHDFRPEYTQMGVLHQQFPQIPIVALTATADKITR 182
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVA--GAGSIIVY 234
DI+ L L +P + I+SFDR N+ VK RG E + IL+ + G S I+Y
Sbjct: 183 EDIVRQLHLNHPRIFISSFDRPNISLTVK---RGFQ-AKEKNKAILEFIHRHGGESGIIY 238
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
CM+ E +++ L++ G++ G YH + ++ R+E FI D I+V+ AT+AFGMGIDK
Sbjct: 239 CMSRNKTETVAQMLQKQGIRCGVYHAGLSTQHRDETQNDFINDRIQVVCATIAFGMGIDK 298
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
+VR VIHY PK++ES+YQE GR GRDG+ S L+Y+ + + ES NQ+
Sbjct: 299 SNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTVLFYSLGDLILLTKFASES---NQQN 355
Query: 355 AIMESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 356 INLEKLQRMQQYAEADICRR 375
>gi|383125120|ref|ZP_09945776.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 1_1_6]
gi|382983453|gb|EIC72782.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 1_1_6]
Length = 620
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 164/378 (43%), Positives = 233/378 (61%), Gaps = 13/378 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M TLK YFGY FRP Q+++I+ ++ K+D LV+M TG GKS+CYQLP L++ TA+VVS
Sbjct: 20 MKETLKSYFGYDSFRPLQEEIIRHLLNKQDSLVLMPTGGGKSICYQLPALLSEGTAVVVS 79
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L+ GI A L S+ ++ +++ G +LL+++PEK I+
Sbjct: 80 PLISLMKDQVETLQANGIAAGALNSSNDETENANLRRACIEGRLKLLYISPEKL----IA 135
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
LL+ + LFA+DEAHCIS+WGHDFR EY Q+ L VP +ALTATA + R
Sbjct: 136 EKDYLLRDMSISLFAIDEAHCISQWGHDFRPEYTQMGMLHQQFPQVPIIALTATADKITR 195
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DII L L P I+SFDR N+ VK + + +++ I + +G I+YCM
Sbjct: 196 EDIIRQLHLIQPRTFISSFDRPNISLDVKRGFQAKEKNKAILEFIHRHREESG--IIYCM 253
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ E +++ L++ G++ G YH + + R+E FI D I+V+ AT+AFGMGIDK +
Sbjct: 254 SRNKTETVAQMLQKQGIRCGVYHAGLSPQHRDETQNDFINDRIQVVCATIAFGMGIDKSN 313
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY PK++ES+YQE GR GRDG+ S L+Y+ + + ES NQ+T
Sbjct: 314 VRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTVLFYSLGDLILLTKFATES---NQQTIN 370
Query: 357 MESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 371 LEKLQRMQQYAEADICRR 388
>gi|270157372|ref|ZP_06186029.1| ATP-dependent DNA helicase RecQ [Legionella longbeachae D-4968]
gi|289164234|ref|YP_003454372.1| ATP-dependent DNA helicase [Legionella longbeachae NSW150]
gi|269989397|gb|EEZ95651.1| ATP-dependent DNA helicase RecQ [Legionella longbeachae D-4968]
gi|288857407|emb|CBJ11235.1| ATP-dependent DNA helicase [Legionella longbeachae NSW150]
Length = 604
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 164/377 (43%), Positives = 228/377 (60%), Gaps = 13/377 (3%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+S LK+YFG+ FRP Q+D+I+ +I D LV+M TG GKSLCYQ+P L+ +VVSP
Sbjct: 13 LSVLKEYFGFDSFRPPQEDIIKDVIAGNDVLVLMPTGGGKSLCYQIPALIRPGVGIVVSP 72
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTD---SSVQTKAETGYFQLLFMTPEKACIIPISF 118
LI+LM+DQV +L+ +GI A + S+ T +V + G LL++ PE+ +I ISF
Sbjct: 73 LIALMEDQVTALRLQGIRAAYYNSSLTSIEAKNVLIQLHHGELDLLYIAPER--LINISF 130
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+L + + LFA+DEAHCIS+WGHDFR EY L L+T VP VALTATA + R D
Sbjct: 131 LDRLKECNIALFAIDEAHCISQWGHDFRPEYAALGVLKTHFPAVPIVALTATADRQTRQD 190
Query: 179 IINSLK-LKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
I+ L + N Y IASF+R N+ Y KV+ + + + + + L SV II YC T
Sbjct: 191 IVAKLNYIPNKY--IASFNRPNIHY--KVVPKTHAL--KQLNQFLSSVEQQSGII-YCGT 243
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
VE + L+++G KA YH + R+E LF D I ++VAT+AFGMGIDKP+V
Sbjct: 244 RNSVENTVEKLQKMGFKARAYHAGLSHAERKEVQTLFRYDRIDIVVATIAFGMGIDKPNV 303
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R+V+HY PK +E+YYQE+GR GRDG+ + L Y ++ A+ + S E QR
Sbjct: 304 RYVVHYDLPKNIEAYYQETGRAGRDGLPAQALLLYDAADSARLRSWIVNSPLEEQRFVET 363
Query: 358 ESLLAAQRYCLLTTCRR 374
L + + CRR
Sbjct: 364 NKLNHMLAFAEASHCRR 380
>gi|29347258|ref|NP_810761.1| ATP-dependent DNA helicase RecQ [Bacteroides thetaiotaomicron
VPI-5482]
gi|29339157|gb|AAO76955.1| ATP-dependent DNA helicase recQ [Bacteroides thetaiotaomicron
VPI-5482]
Length = 620
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 164/378 (43%), Positives = 233/378 (61%), Gaps = 13/378 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M TLK YFGY FRP Q+++I+ ++ K+D LV+M TG GKS+CYQLP L++ TA+VVS
Sbjct: 20 MKETLKSYFGYDSFRPLQEEIIRHLLNKQDSLVLMPTGGGKSICYQLPALLSEGTAVVVS 79
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L+ GI A L S+ ++ +++ G +LL+++PEK I+
Sbjct: 80 PLISLMKDQVETLQANGIAAGALNSSNDETENANLRRACIEGRLKLLYISPEKL----IA 135
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
LL+ + LFA+DEAHCIS+WGHDFR EY Q+ L VP +ALTATA + R
Sbjct: 136 EKDYLLRDMSISLFAIDEAHCISQWGHDFRPEYTQMGMLHQQFPQVPIIALTATADKITR 195
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DII L L P I+SFDR N+ VK + + +++ I + +G I+YCM
Sbjct: 196 EDIIRQLHLIQPRTFISSFDRPNISLDVKRGFQAKEKNKAILEFIHRHREESG--IIYCM 253
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ E +++ L++ G++ G YH + + R+E FI D I+V+ AT+AFGMGIDK +
Sbjct: 254 SRNKTETVAQMLQKQGIRCGVYHAGLSPQHRDETQNDFINDRIQVVCATIAFGMGIDKSN 313
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY PK++ES+YQE GR GRDG+ S L+Y+ + + ES NQ+T
Sbjct: 314 VRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTVLFYSLGDLILLTKFATES---NQQTIN 370
Query: 357 MESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 371 LEKLQRMQQYAEADICRR 388
>gi|298387431|ref|ZP_06996983.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 1_1_14]
gi|298259638|gb|EFI02510.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 1_1_14]
Length = 601
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 164/378 (43%), Positives = 233/378 (61%), Gaps = 13/378 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M TLK YFGY FRP Q+++I+ ++ K+D LV+M TG GKS+CYQLP L++ TA+VVS
Sbjct: 1 MKETLKSYFGYDSFRPLQEEIIRHLLNKQDSLVLMPTGGGKSICYQLPALLSEGTAVVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L+ GI A L S+ ++ +++ G +LL+++PEK I+
Sbjct: 61 PLISLMKDQVETLQANGIAAGALNSSNDETENANLRRACIEGRLKLLYISPEKL----IA 116
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
LL+ + LFA+DEAHCIS+WGHDFR EY Q+ L VP +ALTATA + R
Sbjct: 117 EKDYLLRDMSISLFAIDEAHCISQWGHDFRPEYTQMGMLHQQFPQVPIIALTATADKITR 176
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DII L L P I+SFDR N+ VK + + +++ I + +G I+YCM
Sbjct: 177 EDIIRQLHLIQPRTFISSFDRPNISLDVKRGFQAKEKNKAILEFIHRHREESG--IIYCM 234
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ E +++ L++ G++ G YH + + R+E FI D I+V+ AT+AFGMGIDK +
Sbjct: 235 SRNKTETVAQMLQKQGIRCGVYHAGLSPQHRDETQNDFINDRIQVVCATIAFGMGIDKSN 294
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY PK++ES+YQE GR GRDG+ S L+Y+ + + ES NQ+T
Sbjct: 295 VRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTVLFYSLGDLILLTKFATES---NQQTIN 351
Query: 357 MESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 352 LEKLQRMQQYAEADICRR 369
>gi|317479553|ref|ZP_07938681.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 4_1_36]
gi|316904283|gb|EFV26109.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 4_1_36]
Length = 603
Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 162/378 (42%), Positives = 234/378 (61%), Gaps = 13/378 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ TLK YFGY FRP Q+D+I+ +++++D LV+M TG GKS+CYQLP L++ TA+VVS
Sbjct: 1 MLQTLKTYFGYDSFRPLQEDIIRHLMDRKDALVLMPTGGGKSICYQLPALLSEGTAVVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L GI A L S ++ S++ G +LL+++PEK ++
Sbjct: 61 PLISLMKDQVETLCANGIAAGALNSNNDETENASLRRACMEGKLKLLYISPEKL----LA 116
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
+ LL+ + LFA+DEAHCIS+WGHDFR EY Q+ L VP +ALTATA + R
Sbjct: 117 EANYLLRDMHISLFAIDEAHCISQWGHDFRPEYTQMGILHQLFPQVPIIALTATADKITR 176
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DII L L P + I+SFDR NL VK + + ++ I + +G I+YCM
Sbjct: 177 EDIIKQLHLNQPRIFISSFDRPNLSLTVKRGYQQKEKSKAILDFIARHPGESG--IIYCM 234
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ E +++ L++ G+K+ YH + R+EA FI D ++V+ AT+AFGMGIDK +
Sbjct: 235 SRSKAETVAQMLQKQGIKSAVYHAGLSPARRDEAQDDFINDRVQVVCATIAFGMGIDKSN 294
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY PK++ES+YQE GR GRDG+ S L+Y+ ++ + +S Q++
Sbjct: 295 VRWVIHYNLPKSIESFYQEIGRAGRDGMPSDTLLFYSLADLILLTKFATDS---GQQSIN 351
Query: 357 MESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 352 LEKLQRMQQYAEADICRR 369
>gi|37522198|ref|NP_925575.1| ATP-dependent DNA helicase [Gloeobacter violaceus PCC 7421]
gi|35213198|dbj|BAC90570.1| ATP-dependent DNA helicase [Gloeobacter violaceus PCC 7421]
Length = 746
Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 161/379 (42%), Positives = 231/379 (60%), Gaps = 13/379 (3%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
LK++FG+ FRP Q+ +++ I D L++M TG GKSL YQLP L+ +VVSPL
Sbjct: 20 EALKRHFGHERFRPGQRRIVELAIAGHDQLILMPTGGGKSLTYQLPALLLPGLTVVVSPL 79
Query: 63 ISLMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEK----ACIIP 115
I+LM DQV L++ GI A FL S A + + G +LL+++PE+ C+
Sbjct: 80 IALMHDQVDRLRENGIAATFLNSTLAAGERTRREQAIAQGRMKLLYLSPERLLSEECLAF 139
Query: 116 ISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
+ + + + G+ L AVDEAHC+SEWGHDFR EY+QL +R +P +ALTATATE+V
Sbjct: 140 LEYVQR--QGGLSLLAVDEAHCVSEWGHDFRPEYRQLAAVRERFAALPTLALTATATERV 197
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYC 235
R DI+ LKL++P++ IASFDR NL Y V ++G ++ + L + L+ + GA S IVYC
Sbjct: 198 RQDILVQLKLRDPHIHIASFDRPNLHYAVLAKDKG-AYAELLGR--LRRLDGA-SAIVYC 253
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
+ + VE +++ L G+ A YH M ++ R F+RD+ V+VAT+AFGMGI KP
Sbjct: 254 QSRRAVEALAERLVADGLNALPYHAGMAAEMRSRHQTQFLRDDAPVLVATVAFGMGIAKP 313
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTA 355
DVR V HY P+ LE YYQESGR GRDG + C L+++ + AK ++ + +++
Sbjct: 314 DVRAVFHYELPRNLEGYYQESGRAGRDGQPADCVLFFSPGDRAKIEYLVAQKSDPHEQRL 373
Query: 356 IMESLLAAQRYCLLTTCRR 374
L Y T CRR
Sbjct: 374 ARSQLAQMLAYAESTVCRR 392
>gi|423305643|ref|ZP_17283642.1| ATP-dependent DNA helicase RecQ [Bacteroides uniformis CL03T00C23]
gi|423309812|ref|ZP_17287802.1| ATP-dependent DNA helicase RecQ [Bacteroides uniformis CL03T12C37]
gi|392680875|gb|EIY74239.1| ATP-dependent DNA helicase RecQ [Bacteroides uniformis CL03T00C23]
gi|392683916|gb|EIY77249.1| ATP-dependent DNA helicase RecQ [Bacteroides uniformis CL03T12C37]
Length = 603
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 162/378 (42%), Positives = 234/378 (61%), Gaps = 13/378 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ TLK YFGY FRP Q+D+I+ +++++D LV+M TG GKS+CYQLP L++ TA+VVS
Sbjct: 1 MLQTLKTYFGYDSFRPLQEDIIRHLMDRKDALVLMPTGGGKSICYQLPALLSEGTAVVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L GI A L S ++ S++ G +LL+++PEK ++
Sbjct: 61 PLISLMKDQVETLCANGIAAGALNSNNDETENASLRRACMEGKLKLLYISPEKL----LA 116
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
+ LL+ + LFA+DEAHCIS+WGHDFR EY Q+ L VP +ALTATA + R
Sbjct: 117 EANYLLRDMHISLFAIDEAHCISQWGHDFRPEYTQMGILHQLFPQVPIIALTATADKITR 176
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DII L L P + I+SFDR NL VK + + ++ I + +G I+YCM
Sbjct: 177 EDIIKQLHLNQPRIFISSFDRPNLSLTVKRGYQQKEKSKAILDFIARHPGESG--IIYCM 234
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ E +++ L++ G+K+ YH + R+EA FI D ++V+ AT+AFGMGIDK +
Sbjct: 235 SRSKAETVAQMLQKQGIKSAVYHAGLSPARRDEAQDDFINDRVQVVCATIAFGMGIDKSN 294
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY PK++ES+YQE GR GRDG+ S L+Y+ ++ + +S Q++
Sbjct: 295 VRWVIHYNLPKSIESFYQEIGRAGRDGMPSDTLLFYSLADLILLTKFATDS---GQQSIN 351
Query: 357 MESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 352 LEKLQRMQQYAEADICRR 369
>gi|323345242|ref|ZP_08085465.1| ATP-dependent helicase RecQ [Prevotella oralis ATCC 33269]
gi|323093356|gb|EFZ35934.1| ATP-dependent helicase RecQ [Prevotella oralis ATCC 33269]
Length = 615
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 169/382 (44%), Positives = 230/382 (60%), Gaps = 18/382 (4%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ LKKY+GY+ FRP Q+ +IQ II+ +DC V+M TG GKS+CYQ+P L TA+VVSP
Sbjct: 4 IDILKKYYGYNSFRPNQEKIIQEIIQGQDCFVLMPTGGGKSICYQIPALAMQGTAVVVSP 63
Query: 62 LISLMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACI-IPIS 117
LISLM DQV +LK GI AE L S A D+ ++ K +G +L++++PE+ IP
Sbjct: 64 LISLMHDQVQALKTNGIAAEELNSVNDANQDTMIRRKCMSGELKLIYVSPERLISEIPHL 123
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
F S + LFA+DEAHCIS+WGHDFR EY +L LR +P +ALTATA R
Sbjct: 124 FSS----IHISLFAIDEAHCISQWGHDFRPEYARLGILREKFPTIPIIALTATADRITRE 179
Query: 178 DIINSLKLK-----NPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSII 232
DII L L V I+SFDR NL VK + Q+ + +V I V +G I
Sbjct: 180 DIIKQLHLNIGDDHKHRVFISSFDRSNLSLSVKRGYKKQAKMRYIVDFIRAHVNESG--I 237
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
+YC++ K E +S L++LG+ A TYH + + R LF D+I+V+ AT+AFGMGI
Sbjct: 238 IYCLSRKITESVSVELQKLGIDAATYHAGLSTGERTRIQNLFKNDQIQVICATIAFGMGI 297
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ 352
DK ++R VIHY PK++E++YQE GR GRDG + L+Y S+ + ES+ N
Sbjct: 298 DKSNIRWVIHYNLPKSIENFYQEIGRAGRDGAPADTVLFYDLSDIVMLRKFAIESRQHNL 357
Query: 353 RTAIMESLLAAQRYCLLTTCRR 374
ME L ++Y + CRR
Sbjct: 358 N---MEKLNYMRQYAESSVCRR 376
>gi|395233107|ref|ZP_10411352.1| ATP-dependent DNA helicase RecQ [Enterobacter sp. Ag1]
gi|394732454|gb|EJF32127.1| ATP-dependent DNA helicase RecQ [Enterobacter sp. Ag1]
Length = 609
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 165/374 (44%), Positives = 227/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FRP QK +I ++E RDCLVVM TG GKSLCYQ+P LV G +VVSPLIS
Sbjct: 17 LQDTFGYQQFRPGQKTIIDTVLEGRDCLVVMPTGGGKSLCYQIPALVFGGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLLANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMMDNFIDH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +LR L VPFVALTATA + R+DI+
Sbjct: 135 LSNWQLSMVAVDEAHCISQWGHDFRPEYAALGQLRERLPAVPFVALTATADDTTRLDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P++ I+SFDR N+ Y ++ +D+L + I + +G I+YC + V
Sbjct: 195 LLGLHDPFIQISSFDRPNIRY---MLMEKFKPLDQLTRYIQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+I+ L+ G+ AG YH + + R + F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 250 EDIAARLQSKGISAGAYHAGLEHQVRGDVQEKFQRDDLQIVVATVAFGMGINKPNVRFVA 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-KCLEEKAPGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|189466850|ref|ZP_03015635.1| hypothetical protein BACINT_03226 [Bacteroides intestinalis DSM
17393]
gi|189435114|gb|EDV04099.1| ATP-dependent DNA helicase RecQ [Bacteroides intestinalis DSM
17393]
Length = 602
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 164/378 (43%), Positives = 237/378 (62%), Gaps = 13/378 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ TLK+YFGY FRP Q+++I+ +++ RD LV+M TG GKS+CYQLP L+ TA+VVS
Sbjct: 1 MIQTLKRYFGYDSFRPLQEEIIRTVLDGRDSLVLMPTGGGKSICYQLPALLCEGTAVVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSA--QTDSSVQTKA-ETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV SL G+ A L S+ +T+++V +A G +LL+++PEK I+
Sbjct: 61 PLISLMKDQVESLCANGVAAGALNSSNDETENAVLRRACMEGSLKLLYISPEKL----IA 116
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
+ LL+ + LFA+DEAHCIS+WGHDFR EY Q+ +R +P +ALTATA + R
Sbjct: 117 EANYLLRDMHISLFAIDEAHCISQWGHDFRPEYAQMGFIREMFPNIPVIALTATADKITR 176
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DI+ L L P V I+SFDR NL VK + + ++ I + +G I+YCM
Sbjct: 177 EDIVRQLHLNQPKVFISSFDRPNLSLTVKRGYQQKEKSKAILDFIGRHRGESG--IIYCM 234
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ E +++ L++ G++ YH + S R+EA FI D ++++ AT+AFGMGIDK +
Sbjct: 235 SRSKTETVAQMLQKQGLRVAVYHAGLSSVRRDEAQDDFINDRVQIVCATIAFGMGIDKSN 294
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY PK++ES+YQE GR GRDG+ S L+Y+ ++ + ES Q+
Sbjct: 295 VRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTLLFYSLADLILLTKFATES---GQQGIN 351
Query: 357 MESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 352 LEKLQRMQQYAEADVCRR 369
>gi|383113297|ref|ZP_09934070.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. D2]
gi|382948819|gb|EFS32303.2| ATP-dependent DNA helicase RecQ [Bacteroides sp. D2]
Length = 608
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 166/380 (43%), Positives = 234/380 (61%), Gaps = 17/380 (4%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M TLK YFGY FRP Q+++I ++ K+D LV+M TG GKS+CYQLP L+ TA+VVS
Sbjct: 7 MRETLKTYFGYDSFRPLQEEIIHHVLNKQDTLVLMPTGGGKSICYQLPALLCEGTAVVVS 66
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L GI A L S+ ++ +++ G +LL+++PEK ++
Sbjct: 67 PLISLMKDQVEALLANGIAAGALNSSNDETENANLRRACIEGRLKLLYISPEKL----LA 122
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
LL+ + LFA+DEAHCIS+WGHDFR EY Q+ L +P +ALTATA + R
Sbjct: 123 EKDYLLRDMNISLFAIDEAHCISQWGHDFRPEYTQMGVLHQQFPQIPIIALTATADKITR 182
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVA--GAGSIIVY 234
DI+ L L +P V I+SFDR N+ VK RG E + IL+ + G S I+Y
Sbjct: 183 EDIVRQLHLNHPRVFISSFDRPNISLTVK---RGFQ-AKEKNKAILEFIHRHGGESGIIY 238
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
CM+ E +++ L++ G++ G YH + ++ R+E FI D I+V+ AT+AFGMGIDK
Sbjct: 239 CMSRSKTETVAQMLQKQGIRCGVYHAGLSTQHRDETQNDFINDRIQVVCATIAFGMGIDK 298
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
+VR VIHY PK++ES+YQE GR GRDG+ S L+Y+ + + ES NQ++
Sbjct: 299 SNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSSTVLFYSLGDLILLTKFASES---NQQS 355
Query: 355 AIMESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 356 INLEKLQRMQQYAEADICRR 375
>gi|393788520|ref|ZP_10376647.1| ATP-dependent DNA helicase RecQ [Bacteroides nordii CL02T12C05]
gi|392654200|gb|EIY47848.1| ATP-dependent DNA helicase RecQ [Bacteroides nordii CL02T12C05]
Length = 601
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 161/377 (42%), Positives = 233/377 (61%), Gaps = 11/377 (2%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ TLK YFGY FRP Q+++I+ ++ ++D LV+M TG GKS+CYQLP L+ TA+VVS
Sbjct: 1 MIQTLKTYFGYESFRPLQEEIIRNLLNRKDSLVLMPTGGGKSICYQLPALLCEGTAIVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L+ GI A L S+ ++ +++ G +LL+++PEK I +
Sbjct: 61 PLISLMKDQVEALRANGIAAGALNSSNDETENANLRRACIEGKIKLLYISPEK-LITEVD 119
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
+ L + LFA+DEAHCIS+WGHDFR EY Q+ L VP +ALTATA + R
Sbjct: 120 YL--LRDMNLSLFAIDEAHCISQWGHDFRPEYAQMGILHQMFPKVPIIALTATADKITRG 177
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DII L L +P + I+SFDR NL VK + + +++ I + +G I+YCM+
Sbjct: 178 DIIRQLHLTDPKIFISSFDRPNLSLTVKRGYQQKEKSKAILEFIDRHADESG--IIYCMS 235
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
E +++ L++ G++ G YH + + R+ FI D I+V+ AT+AFGMGIDK +V
Sbjct: 236 RSKTETVAQMLQKHGIRCGVYHAGLSAYQRDNTQDDFINDRIQVVCATIAFGMGIDKSNV 295
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHY PK++ES+YQE GR GRDG+ S L+Y+ + + ES+ Q+T +
Sbjct: 296 RWVIHYNLPKSIESFYQEIGRAGRDGMPSDTVLFYSLGDLILLTKFATESK---QQTINL 352
Query: 358 ESLLAAQRYCLLTTCRR 374
E L Q+Y CRR
Sbjct: 353 EKLQRMQQYAEADICRR 369
>gi|332667951|ref|YP_004450739.1| ATP-dependent DNA helicase RecQ [Haliscomenobacter hydrossis DSM
1100]
gi|332336765|gb|AEE53866.1| ATP-dependent DNA helicase RecQ [Haliscomenobacter hydrossis DSM
1100]
Length = 713
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 165/377 (43%), Positives = 228/377 (60%), Gaps = 16/377 (4%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
LK+YFGY FRP Q ++I+ I +D LV+M TG GKS+C+Q+P + T +VVSPLI
Sbjct: 9 ALKRYFGYDQFRPLQAEIIRAIFAGKDALVLMPTGGGKSVCFQIPAVTMPGTCVVVSPLI 68
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYF----QLLFMTPEKACIIPISFW 119
SLM+DQV L+ GI A FL SA DS Q K E ++ LL+++PEK ++ +F
Sbjct: 69 SLMKDQVEGLRANGIQAAFLNSA-IDSREQLKVEESFYAGALNLLYVSPEK--LVSGNFV 125
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
S L + + LFA+DEAHCIS WGHDFR EY Q+ L+ VP +ALTATA + R DI
Sbjct: 126 SILKRGKINLFAIDEAHCISAWGHDFRPEYTQMGMLKQHFPQVPVIALTATADKLTRKDI 185
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
++ LKL+ P + IASFDR NL V+ GQ + ++ + + K AG I+YC++ K
Sbjct: 186 VDQLKLEEPGIFIASFDRPNLSLEVRP---GQQRLGQIQEFVQKHPKQAG--IIYCLSRK 240
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
E+++ L Q G+KA YH + R + FI D I ++ AT+AFGMGIDK +VR
Sbjct: 241 TAEDVAAKLAQQGLKAEAYHAGLSPDRRSKIQDNFINDNIHIICATVAFGMGIDKSNVRW 300
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA--KGDFYCGESQTENQRTAIM 357
VIHY PK LE YYQE GR GRDG + L+Y+ ++ + + GE+ +N+ +
Sbjct: 301 VIHYNLPKNLEGYYQEIGRAGRDGAKADTLLFYSFADVSMLRDIIQNGENAAQNEIQLV- 359
Query: 358 ESLLAAQRYCLLTTCRR 374
L Q+Y CRR
Sbjct: 360 -KLERMQQYAESLACRR 375
>gi|196228960|ref|ZP_03127826.1| ATP-dependent DNA helicase RecQ [Chthoniobacter flavus Ellin428]
gi|196227241|gb|EDY21745.1| ATP-dependent DNA helicase RecQ [Chthoniobacter flavus Ellin428]
Length = 610
Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 160/377 (42%), Positives = 223/377 (59%), Gaps = 10/377 (2%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+++TLK+ FGY FRP Q+++I + RD ++ TG GKSLC+QLP L+ +VVS
Sbjct: 7 LLATLKQTFGYDSFRPLQEEIITDALAGRDVFALLPTGGGKSLCFQLPALLRDGLTVVVS 66
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPIS 117
PLI+LM+DQV +L G+ A FL S + + G F+LL+ PE+ ++P
Sbjct: 67 PLIALMKDQVDALTATGVPATFLNSTLDGDEARARFRGLHRGEFRLLYAAPER-LMLP-G 124
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
F L V A+DEAHCISEWGHDFR EY+QL LR L VP +ALTATATE+VR
Sbjct: 125 FVDNLRAWNVTQIAIDEAHCISEWGHDFRPEYRQLADLRETLPDVPMMALTATATERVRA 184
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DII L+L++P ASF+R NL Y +V+ R Q + + V L+S G II YC +
Sbjct: 185 DIIERLRLRDPRCYTASFNRPNLTY--RVVPRAQPY--DQVLAFLRSRPGESGII-YCSS 239
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K E +++ L + A YH + ++ R LF+RDE+RV+ AT+AFGMGI+KP+V
Sbjct: 240 RKATESVAERLADDRISAKPYHAGLTAEERGRHQELFLRDEVRVICATIAFGMGINKPNV 299
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R V+HY PK +E YYQE+GR GRDG+ C L ++ ++ K + E +R
Sbjct: 300 RFVLHYDLPKNIEGYYQETGRAGRDGLPGECVLLFSAADVVKQTSFIEEKTDPEERRIAR 359
Query: 358 ESLLAAQRYCLLTTCRR 374
L + + CRR
Sbjct: 360 AQLQQMVHFAESSACRR 376
>gi|303287108|ref|XP_003062843.1| ATP-dependent DNA helicase [Micromonas pusilla CCMP1545]
gi|226455479|gb|EEH52782.1| ATP-dependent DNA helicase [Micromonas pusilla CCMP1545]
Length = 1049
Score = 301 bits (770), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 182/412 (44%), Positives = 238/412 (57%), Gaps = 48/412 (11%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+TL +YFG+S FR Q VI + RD V +TGSGKSLCYQLP L TGKT LVVSPL
Sbjct: 94 ATLSEYFGHSDFREGQMSVIAAAVSDRDSCVYWSTGSGKSLCYQLPALHTGKTTLVVSPL 153
Query: 63 ISLMQDQVMSLKQ----RGIN-------AEFLGSAQTDSSVQTKAETGYFQLLFMTPEKA 111
ISLM DQV L G+ A FLGS QTD SV+ A G ++++++TPEK
Sbjct: 154 ISLMNDQVTHLNNTAGASGMGKGDAFPLAAFLGSTQTDRSVEENALRGAYRVVYVTPEK- 212
Query: 112 CIIPISFWSKLLKAG--------------VCLFAVDEAHCISEWGHDFRLEYKQLDKLRT 157
+ SF G + L A+DEAHC+S+WGHDFR Y+ L ++R
Sbjct: 213 --LVGSFGDDTGGNGYFLSRLKEMVRSKKLGLVAIDEAHCLSQWGHDFRTSYRGLARVRA 270
Query: 158 FLLG---VPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFV 214
L VP +ALTATA + VR DI + L+L+ P+V S DR NL V VI +
Sbjct: 271 ELAPNGEVPIMALTATAVDAVREDIASVLELRAPFVAQNSCDRPNL--AVSVIKKRGGAA 328
Query: 215 DELVQEILKSVAG-AGSIIVYCMTIKDVEEISKALKQL------GVK--AGTYHGQMGSK 265
D ++ ++ VAG AGS+I+YC T+++VE+++ L + G K GTYH QM
Sbjct: 329 D--LKHVVDRVAGVAGSVIIYCPTVREVEQVASHLGNVFASRPDGAKNAVGTYHAQMSPS 386
Query: 266 AREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIA 325
RE HR F+ +V+VAT+AFGMGIDKPD+R V+HYG PKT+E YYQ+ GR GRDG+
Sbjct: 387 ERERVHREFLTGRRKVVVATVAFGMGIDKPDIRLVMHYGAPKTMEEYYQQVGRAGRDGLP 446
Query: 326 SVCWLYYARSNFAK--GDFYCGESQTENQRTAIMESLLAAQRYCLLT-TCRR 374
S + Y +F+K DFY G +E R S A +R+ CRR
Sbjct: 447 SKVEMLYGDGDFSKYGSDFYVG-GLSETVRRTQKASTDALERFSREPLACRR 497
>gi|365119359|ref|ZP_09337481.1| ATP-dependent DNA helicase RecQ [Tannerella sp. 6_1_58FAA_CT1]
gi|363648680|gb|EHL87834.1| ATP-dependent DNA helicase RecQ [Tannerella sp. 6_1_58FAA_CT1]
Length = 709
Score = 300 bits (769), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 161/380 (42%), Positives = 226/380 (59%), Gaps = 25/380 (6%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LKKY+GY FR Q ++I II RDCLV+M TG GKSLCYQ+P ++ G T +VVSPL++
Sbjct: 12 LKKYYGYDTFRLQQAEIIDTIISGRDCLVLMPTGGGKSLCYQIPAIIKGGTTVVVSPLLA 71
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L GI A L S Q ++ V+ A G +LL+++PE+ +
Sbjct: 72 LMKDQVDTLDSNGIPAAMLNSLQNETETVKVKIAARRGDLRLLYISPER---LMGEIDGL 128
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + LFA+DEAHCIS+WGHDFR EY +L L+ + VP +ALTATA + R DI+
Sbjct: 129 LREMNISLFAIDEAHCISQWGHDFRPEYNRLSVLKKYFPKVPLMALTATADKLTREDIVT 188
Query: 182 SLKLKNPYVTIASFDRKNLFYGV-KVINRGQ------SFVDELVQEILKSVAGAGSIIVY 234
L + NP V I+SFDR NL V K +N+ Q SF+++ ++ S I+Y
Sbjct: 189 QLAMDNPQVFISSFDRPNLTLSVRKNLNKKQKLSAILSFIEQHPRQ---------SGIIY 239
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
CM+ E + + L Q G+ YH + S+ RE A + F+ D ++++ AT+AFGMGIDK
Sbjct: 240 CMSRNSTEILVRELSQYGISVTAYHAGLSSRERETAQQAFLNDRVQIICATIAFGMGIDK 299
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
+VR VIHY PK++E YYQE GR GRDG+ L+Y+ + + ES Q+
Sbjct: 300 SNVRWVIHYNMPKSIECYYQEIGRAGRDGMKGDTLLFYSLGDVVMLSKFAEES---GQKK 356
Query: 355 AIMESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 357 INLEKLRRMQQYAESPICRR 376
>gi|406835090|ref|ZP_11094684.1| ATP-dependent DNA helicase RecQ [Schlesneria paludicola DSM 18645]
Length = 617
Score = 300 bits (769), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 166/376 (44%), Positives = 233/376 (61%), Gaps = 19/376 (5%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK+Y+GY FRP Q++ ++ ++E RD +VV+ TG GKS+C+Q P + A+VVSPLIS
Sbjct: 15 LKEYWGYDAFRPLQEEAMRAVLEHRDSIVVLPTGGGKSICFQAPAVAMPGLAVVVSPLIS 74
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L + GI A + S+ + S V +G +LL++ PE+ C + + +
Sbjct: 75 LMKDQVDALTECGIPAACVNSSMSQSERLKVTESIRSGTLKLLYVAPERLCNDRMLSFLE 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
LK V FA+DEAHCIS WGHDFR EY+ L +LRT GV A TATATE+VR DI +
Sbjct: 135 SLK--VSFFAIDEAHCISAWGHDFRPEYRMLQQLRTRFPGVGVHAYTATATEQVRQDISD 192
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVIN--RGQ--SFVDELVQEILKSVAGAGSIIVYCMT 237
L L++P I SFDR NL Y V+ N R Q + VD QE AG +VYC++
Sbjct: 193 QLGLRDPKWLIGSFDRPNLVYRVQRRNDLRKQVRAVVDAHPQE-------AG--VVYCIS 243
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
++V+E+++ L Q G KA YH + R F+ D+ +++VAT+AFGMGIDK +V
Sbjct: 244 RREVDELAEYLSQAGYKARPYHAGLSDADRVRHQDEFLNDQTQIIVATVAFGMGIDKSNV 303
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R+VIH G PK+LE Y QE+GR GRDG+ + CWL ++ +NF E E +T +
Sbjct: 304 RYVIHTGAPKSLEHYQQETGRAGRDGLEAECWLLWSSANFITWRKMQEELPAE-AKTLAL 362
Query: 358 ESLLAAQRYCLLTTCR 373
ESL +R+C +CR
Sbjct: 363 ESLKGMERFCTGVSCR 378
>gi|126179265|ref|YP_001047230.1| ATP-dependent DNA helicase RecQ [Methanoculleus marisnigri JR1]
gi|125862059|gb|ABN57248.1| ATP-dependent DNA helicase, RecQ family [Methanoculleus marisnigri
JR1]
Length = 419
Score = 300 bits (769), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 167/374 (44%), Positives = 224/374 (59%), Gaps = 10/374 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++YFG+S F YQ+++I+ ++ RD L V+ATG GKSLCYQ+P LV LV+SPLI+
Sbjct: 8 LQRYFGHSAFNLYQREIIEDLLAGRDVLAVLATGGGKSLCYQVPALVGDGVVLVISPLIA 67
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQ---TKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ RG+ AE L S+ + ++ + ++ + G Q+L+++PEKA + F
Sbjct: 68 LMKDQVDDLQARGVGAEALNSSGSYAATRRILSELKEGLIQILYVSPEKA--VGEDFIDL 125
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
+ V L AVDEAHCIS WGH FR EY+ L L+ GVP VALTATAT VR DI
Sbjct: 126 MASLPVTLIAVDEAHCISMWGHQFRPEYRSLSVLKERFPGVPMVALTATATPDVRDDIAR 185
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P V + SF+R+NL Y V+ + + + L + AG IVY T
Sbjct: 186 QLNLSDPSVYVGSFNRENLRY--VVVGKEEDAYERLRAYLRGRRGDAG--IVYVATRDGA 241
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E ++ L+ G+ A YH M + AR E FI ++ V+ AT AFGMGIDKPDVR V+
Sbjct: 242 ETLAARLRAGGIPALPYHAGMTAAARRETQDRFIGGKVPVVCATSAFGMGIDKPDVRFVV 301
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAK-GDFYCGESQTENQRTAIMESL 360
HY PKTLE+YYQESGR GRDG S C LYY+ + + F + +E QR L
Sbjct: 302 HYDMPKTLEAYYQESGRAGRDGKESDCILYYSDEDARRLRSFIDRDLASEFQRKVARSKL 361
Query: 361 LAAQRYCLLTTCRR 374
+ YC T CRR
Sbjct: 362 QSMVDYCTTTECRR 375
>gi|94970568|ref|YP_592616.1| ATP-dependent DNA helicase RecQ [Candidatus Koribacter versatilis
Ellin345]
gi|94552618|gb|ABF42542.1| ATP-dependent DNA helicase, RecQ family [Candidatus Koribacter
versatilis Ellin345]
Length = 644
Score = 300 bits (769), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 160/375 (42%), Positives = 224/375 (59%), Gaps = 10/375 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
S LK YFGY FRP Q+ +I+ I+ +D V+M TG GKSLCYQLP ++ KT +V+SPL
Sbjct: 11 SALKHYFGYDRFRPLQERIIRSIVANKDVCVIMPTGGGKSLCYQLPAAISQKTTVVISPL 70
Query: 63 ISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
I+LM DQV+ L Q GI A L S+ V A G ++LL+++PE+ W
Sbjct: 71 IALMNDQVVQLTQMGIPAALLNSSLPYDEQKKVMRAAREGKYRLLYLSPERLVREDTVGW 130
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+ + GV FA+DEAHCISEWGH+FR EY+QL LR VP A TA+AT++VR DI
Sbjct: 131 LRTVPLGV--FAIDEAHCISEWGHEFRPEYRQLKLLRNSFPDVPIAAFTASATQRVRHDI 188
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINR-GQSFVDELVQEILKSVAGAGSIIVYCMTI 238
++ L L+ P IASF R NL Y ++ + GQ +++ L+S AG ++IVY TI
Sbjct: 189 VHQLALREPDKYIASFHRPNLRYIIRQTDPYGQR---DMLLRALRSYAGH-NVIVYAPTI 244
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K VEE++ L + A YHGQM S R ++ DE+RV+V T+AFG+GI+KP VR
Sbjct: 245 KMVEEVADFLIDKKIPAVPYHGQMDSALRTRNQEKWMTDEVRVLVGTIAFGLGINKPAVR 304
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
VIH PK+LE+YYQE+GR GRDG+ + C + + + ++ + Q +++ E
Sbjct: 305 AVIHLAVPKSLENYYQEAGRAGRDGLPADCVMLWQPKDLGLLVYFIQQMQDTSEKKRAWE 364
Query: 359 SLLAAQRYCLLTTCR 373
+ CR
Sbjct: 365 RYQVISEFVKSDECR 379
>gi|261493662|ref|ZP_05990181.1| ATP-dependent helicase RecQ [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261310662|gb|EEY11846.1| ATP-dependent helicase RecQ [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 599
Score = 300 bits (768), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 162/378 (42%), Positives = 225/378 (59%), Gaps = 14/378 (3%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+S L FGY FR Q++VI ++E RDCLV+M TG GKSLCYQ+P L LV+SP
Sbjct: 6 ISVLNNIFGYQKFRDGQEEVINAVLENRDCLVIMTTGGGKSLCYQVPALCLDGITLVISP 65
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L GI A +L S QT V+ KA +G +LL+++PEK ++ F
Sbjct: 66 LISLMKDQVDQLITNGIEAAYLNSTQTLEEQQFVEQKALSGQLKLLYLSPEK--VMTQGF 123
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + + AVDEAHC+S+WGHDFR EY L LR VP +ALTATA R D
Sbjct: 124 FHFISLCKISFIAVDEAHCVSQWGHDFRPEYTLLGGLRNTFPNVPLMALTATADPTTRSD 183
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSF--VDELVQEILKSVAGAGSIIVYCM 236
I++ L+L +P++ + SFDR N+ Y V+ + F +++L++ I K +G IVYC
Sbjct: 184 ILHHLRLNSPHIYLGSFDRPNIRYTVQ-----EKFKPLEQLIKLISKQQGKSG--IVYCN 236
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K VEEI++ L + YH M + RE F RD+I+++VAT+AFGMGI+K +
Sbjct: 237 SRKKVEEITEKLSARKISVMGYHAGMSFEQRERVQNAFQRDDIQIVVATIAFGMGINKSN 296
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR V+H+ P+++ESYYQE+GR GRD + S L+Y S++A E QR
Sbjct: 297 VRFVVHFDLPRSIESYYQETGRAGRDDLPSEAVLFYDPSDYAWLQKILLEEPESEQRNIK 356
Query: 357 MESLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 357 QHKLQAIGDFAESQTCRR 374
>gi|395645604|ref|ZP_10433464.1| ATP-dependent DNA helicase, RecQ family [Methanofollis liminatans
DSM 4140]
gi|395442344|gb|EJG07101.1| ATP-dependent DNA helicase, RecQ family [Methanofollis liminatans
DSM 4140]
Length = 506
Score = 300 bits (768), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 162/379 (42%), Positives = 225/379 (59%), Gaps = 21/379 (5%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LKKY+GY+ FRP+Q+++I ++E RD + ++ATGSGKSLCYQ+P L G LVVSPL+S
Sbjct: 8 LKKYWGYTSFRPHQREIIASVLEGRDTVAILATGSGKSLCYQVPALCLGGLTLVVSPLLS 67
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTD---SSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L RGI+A A T ++ + E +LLF++PEK C+ P +
Sbjct: 68 LMKDQVDDLNLRGISAAACTGALTHREREEIERQLEDNALRLLFLSPEK-CMQP-GLLTY 125
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L++ V L A+DEAHCIS WGH FR EY+QL L+ + VP VALTATA +VR DI
Sbjct: 126 LVQFPVRLIAIDEAHCISAWGHTFRPEYRQLSGLKRYFPDVPIVALTATAIPEVRADIAQ 185
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + +FDR NL Y V + + + + K S IVYC + K
Sbjct: 186 HLGLSDPGEFVGTFDRPNLRYAVVPKEKPMALLLACINRHRKE-----SGIVYCSSKKTA 240
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E++++ L++ G A YH + + RE F+ ++ + AT+AFGMGIDKPDVR+V+
Sbjct: 241 EDLARDLRKYGYSAAAYHAGLPTAVRERVQDDFLSGRVQTVCATVAFGMGIDKPDVRYVV 300
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
HY PK LESYYQE+GR GRDG+ S C L Y + G++ S E ++ +
Sbjct: 301 HYDLPKNLESYYQETGRAGRDGLDSECLLLY-----SPGEYGAVRSMIERDTPDSRQARI 355
Query: 362 AAQR------YCLLTTCRR 374
A ++ YC T CRR
Sbjct: 356 AVRKLDEMIGYCETTVCRR 374
>gi|119488495|ref|ZP_01621668.1| ATP-dependent DNA helicase RecQ [Lyngbya sp. PCC 8106]
gi|119455306|gb|EAW36446.1| ATP-dependent DNA helicase RecQ [Lyngbya sp. PCC 8106]
Length = 335
Score = 300 bits (768), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 156/326 (47%), Positives = 216/326 (66%), Gaps = 16/326 (4%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
+LK +FGY FRP Q+++I++ +++RD L+VM TG GKSLC+QLP L+ +VVSPLI
Sbjct: 18 SLKHFFGYDSFRPGQREIIEQALQRRDLLIVMPTGGGKSLCFQLPALLKPGITVVVSPLI 77
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIPISFWS 120
+LMQDQV++L+ GI A FL S ++++ G +L+++ PE+ ++ F S
Sbjct: 78 ALMQDQVIALEDNGIAANFLNSTLLPEELRSREAAILKGKIKLVYVAPER--LLGERFLS 135
Query: 121 KL----LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
L + G+ FA+DEAHC+SEWGHDFR EY+QL KLR +P +ALTATAT +VR
Sbjct: 136 FLDVVNTQVGISAFAIDEAHCVSEWGHDFRPEYRQLKKLRHRYPQIPMMALTATATPRVR 195
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAG-SIIVYC 235
DII L L P + IASF R NL+Y V + SF +++LK + AG S I+YC
Sbjct: 196 EDIIEQLALNEPLIHIASFLRPNLYYEV-IPKHTHSF-----KQLLKIIQQAGGSGIIYC 249
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
+T K VE ++ L++ G+ YHG + + R E FIRD++ VMVAT+AFGMGI+KP
Sbjct: 250 LTRKRVEYLAFKLREKGIPCLPYHGGLPDEERRENQIRFIRDDVEVMVATVAFGMGINKP 309
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGR 321
DVR V+HY +TLESYYQE+GR GR
Sbjct: 310 DVRFVVHYDLSRTLESYYQEAGRAGR 335
>gi|294644712|ref|ZP_06722461.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus SD CC 2a]
gi|294805927|ref|ZP_06764794.1| ATP-dependent DNA helicase RecQ [Bacteroides xylanisolvens SD CC
1b]
gi|292639975|gb|EFF58244.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus SD CC 2a]
gi|294446809|gb|EFG15409.1| ATP-dependent DNA helicase RecQ [Bacteroides xylanisolvens SD CC
1b]
Length = 621
Score = 300 bits (767), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 167/380 (43%), Positives = 233/380 (61%), Gaps = 17/380 (4%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M TLK YFGY FRP Q+++I+ I+ K+D LV+M TG GKS+CYQLP L+ TA+VVS
Sbjct: 20 MRETLKTYFGYDNFRPLQEEIIRHILNKQDALVLMPTGGGKSICYQLPALLCEGTAVVVS 79
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L GI A L S+ ++ +++ G +LL+++PEK ++
Sbjct: 80 PLISLMKDQVEALLANGIAAGALNSSNDETENANLRRACIEGRLKLLYISPEKL----LA 135
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
LL+ + LFA+DEAHCIS+WGHDFR EY Q+ L +P VALTATA + R
Sbjct: 136 EKDYLLRDMNISLFAIDEAHCISQWGHDFRPEYTQMGVLHQQFPQIPIVALTATADKITR 195
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVA--GAGSIIVY 234
DI+ L L +P I+SFDR N+ VK RG E + IL+ + G S I+Y
Sbjct: 196 EDIVRQLHLNHPRTFISSFDRPNISLTVK---RGFQ-AKEKNKAILEFIHRHGGESGIIY 251
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
CM+ E +++ L++ G++ G YH + ++ R+E FI D I+V+ AT+AFGMGIDK
Sbjct: 252 CMSRSKTETVAQMLQKQGIRCGVYHAGLSTQHRDETQNDFINDRIQVVCATIAFGMGIDK 311
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
+VR VIHY PK++ES+YQE GR GRDG+ S L+Y+ + + ES NQ+
Sbjct: 312 SNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSNTVLFYSLGDLILLTKFASES---NQQN 368
Query: 355 AIMESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 369 INLEKLQRMQQYAEADICRR 388
>gi|397169212|ref|ZP_10492647.1| ATP-dependent DNA helicase [Alishewanella aestuarii B11]
gi|396089292|gb|EJI86867.1| ATP-dependent DNA helicase [Alishewanella aestuarii B11]
Length = 605
Score = 300 bits (767), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 150/377 (39%), Positives = 233/377 (61%), Gaps = 10/377 (2%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+++ LK+ FGYS +R Q+++I +++ RDC V++ TG GKSLCYQLP L LVVS
Sbjct: 5 LLAVLKQSFGYSSWRSGQQEIISAVLQGRDCFVLLPTGGGKSLCYQLPALQLPGVTLVVS 64
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQ---TKAETGYFQLLFMTPEKACIIPIS 117
PL+SLM+DQV SL+ GI A ++ S+ + +V + G +LL++ PE+ ++ S
Sbjct: 65 PLMSLMKDQVDSLRANGIAAAYVNSSLSREAVLDVLNQLRYGELKLLYVAPER--LLQPS 122
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
F +L + GV LFA+DEAHCIS+WGHDFR +Y L +L+ GVPF+ALTATA +
Sbjct: 123 FLERLQEVGVSLFAIDEAHCISQWGHDFRPDYMALSQLKQRFPGVPFIALTATADPATQQ 182
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI+ L L NPY+ SFDR N+ Y V+ R +++L+ + + +G I+YC +
Sbjct: 183 DILQQLGLSNPYIHRGSFDRPNIRYTVQEKFRP---LEQLLAYLKQQENQSG--IIYCSS 237
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
+ V+E++ L++ G K YH S R+ F RD+I ++VAT+AFGMG+DKP++
Sbjct: 238 RRKVDELTAQLQERGYKVAAYHAGHDSTERQRVQDAFKRDDINLIVATVAFGMGVDKPNI 297
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R V+H+ P+T+E+YYQE+GR GRDG+A+ L + ++ + + + + +
Sbjct: 298 RFVVHFELPRTIEAYYQETGRAGRDGVAAEAVLLFDPADIGRMKRWLEAEENPGRAEVVW 357
Query: 358 ESLLAAQRYCLLTTCRR 374
+ L+ + TCRR
Sbjct: 358 QRFLSMAAFAEAQTCRR 374
>gi|262409277|ref|ZP_06085820.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 2_1_22]
gi|262352729|gb|EEZ01826.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 2_1_22]
Length = 608
Score = 300 bits (767), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 167/380 (43%), Positives = 233/380 (61%), Gaps = 17/380 (4%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M TLK YFGY FRP Q+++I+ I+ K+D LV+M TG GKS+CYQLP L+ TA+VVS
Sbjct: 7 MRETLKTYFGYDNFRPLQEEIIRHILNKQDALVLMPTGGGKSICYQLPALLCEGTAVVVS 66
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L GI A L S+ ++ +++ G +LL+++PEK ++
Sbjct: 67 PLISLMKDQVEALLANGIAAGALNSSNDETENANLRRACIEGRLKLLYISPEKL----LA 122
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
LL+ + LFA+DEAHCIS+WGHDFR EY Q+ L +P VALTATA + R
Sbjct: 123 EKDYLLRDMNISLFAIDEAHCISQWGHDFRPEYTQMGVLHQQFPQIPIVALTATADKITR 182
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVA--GAGSIIVY 234
DI+ L L +P I+SFDR N+ VK RG E + IL+ + G S I+Y
Sbjct: 183 EDIVRQLHLNHPRTFISSFDRPNISLTVK---RGFQ-AKEKNKAILEFIHRHGGESGIIY 238
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
CM+ E +++ L++ G++ G YH + ++ R+E FI D I+V+ AT+AFGMGIDK
Sbjct: 239 CMSRSKTETVAQMLQKQGIRCGVYHAGLSTQHRDETQNDFINDRIQVVCATIAFGMGIDK 298
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
+VR VIHY PK++ES+YQE GR GRDG+ S L+Y+ + + ES NQ+
Sbjct: 299 SNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSNTVLFYSLGDLILLTKFASES---NQQN 355
Query: 355 AIMESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 356 INLEKLQRMQQYAEADICRR 375
>gi|345509360|ref|ZP_08788959.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. D1]
gi|345454812|gb|EEO52054.2| ATP-dependent DNA helicase RecQ [Bacteroides sp. D1]
Length = 602
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 167/380 (43%), Positives = 233/380 (61%), Gaps = 17/380 (4%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M TLK YFGY FRP Q+++I+ I+ K+D LV+M TG GKS+CYQLP L+ TA+VVS
Sbjct: 1 MRETLKTYFGYDNFRPLQEEIIRHILNKQDALVLMPTGGGKSICYQLPALLCEGTAVVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L GI A L S+ ++ +++ G +LL+++PEK ++
Sbjct: 61 PLISLMKDQVEALLANGIAAGALNSSNDETENANLRRACIEGRLKLLYISPEKL----LA 116
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
LL+ + LFA+DEAHCIS+WGHDFR EY Q+ L +P VALTATA + R
Sbjct: 117 EKDYLLRDMNISLFAIDEAHCISQWGHDFRPEYTQMGVLHQQFPQIPIVALTATADKITR 176
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVA--GAGSIIVY 234
DI+ L L +P I+SFDR N+ VK RG E + IL+ + G S I+Y
Sbjct: 177 EDIVRQLHLNHPRTFISSFDRPNISLTVK---RGFQ-AKEKNKAILEFIHRHGGESGIIY 232
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
CM+ E +++ L++ G++ G YH + ++ R+E FI D I+V+ AT+AFGMGIDK
Sbjct: 233 CMSRSKTETVAQMLQKQGIRCGVYHAGLSTQHRDETQNDFINDRIQVVCATIAFGMGIDK 292
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
+VR VIHY PK++ES+YQE GR GRDG+ S L+Y+ + + ES NQ+
Sbjct: 293 SNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSNTVLFYSLGDLILLTKFASES---NQQN 349
Query: 355 AIMESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 350 INLEKLQRMQQYAEADICRR 369
>gi|281420257|ref|ZP_06251256.1| ATP-dependent DNA helicase RecQ [Prevotella copri DSM 18205]
gi|281405752|gb|EFB36432.1| ATP-dependent DNA helicase RecQ [Prevotella copri DSM 18205]
Length = 620
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 166/373 (44%), Positives = 224/373 (60%), Gaps = 12/373 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK YFGY FRP Q+ +I+ +++ DCLV+M TG GKSLCYQ+P L TA+V+SPLIS
Sbjct: 7 LKSYFGYDSFRPNQEAIIKEVMQGHDCLVLMPTGGGKSLCYQVPALAMEGTAVVISPLIS 66
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM DQV +LK GI AE L S + ++ + E G +LL+++PEK I I +
Sbjct: 67 LMHDQVEALKANGIPAEALNSGNDTTDELIIRRRCEKGELKLLYVSPEK-LISEIPYLFS 125
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
+K + LFAVDEAHCIS+WGHDFR EY QL L VP +ALTATA + R DII
Sbjct: 126 NIK--ISLFAVDEAHCISQWGHDFRPEYSQLGMLHENFRNVPVMALTATADKITREDIIR 183
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L N ++SFDR NL V+ + ++ + + + I AG I+YC++ K+
Sbjct: 184 QLHL-NGQTFVSSFDRPNLSLTVRQESTKKAKLQYITRFISNHPEEAG--IIYCLSRKNT 240
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E +++ L LG+ A YH M ++ R F D+I+V+ AT+AFGMGIDK +VR VI
Sbjct: 241 EMVAQELIDLGINAAAYHAGMTAQTRASVQERFKMDQIQVVCATIAFGMGIDKSNVRWVI 300
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
HY PK++ES+YQE GR GRDG S L+Y+ ++ +C ES QR ME L
Sbjct: 301 HYNMPKSIESFYQEIGRAGRDGAPSDTVLFYSMADIITLRSFCEES---GQRDVNMEKLR 357
Query: 362 AAQRYCLLTTCRR 374
+ Y CRR
Sbjct: 358 RMEEYAESRVCRR 370
>gi|147919945|ref|YP_686301.1| ATP-dependent DNA helicase [Methanocella arvoryzae MRE50]
gi|110621697|emb|CAJ36975.1| ATP-dependent DNA helicase [Methanocella arvoryzae MRE50]
Length = 605
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 161/376 (42%), Positives = 235/376 (62%), Gaps = 11/376 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
TL++YFGYS FRP+Q++++ ++E RD L ++ATG GKSLCYQLP LV+G +VVSPL
Sbjct: 12 DTLERYFGYSTFRPFQEEIVTDVLEGRDVLAIIATGGGKSLCYQLPALVSGGLTIVVSPL 71
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLM+DQV L R I+A L S+ S++ + G ++L+++PE+ I S
Sbjct: 72 ISLMKDQVDDLLARNISAATLNSSMELWEIRSIEDQLLGGKIKVLYISPER--ITQDSCL 129
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
L K V L A+DEAHCIS WGH FR +Y++L L++ VP +ALTA+A +VR DI
Sbjct: 130 QFLEKLDVKLIAIDEAHCISMWGHQFRPDYRRLSLLKSKFPKVPMIALTASAIPEVREDI 189
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+ LKL +P + SF+R NL Y V+ + +++ I ++ +G IVYC+ K
Sbjct: 190 ASQLKLVSPKKYLGSFNRINLRYEVR---EKKDATAQILSYIARNRGKSG--IVYCLARK 244
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
EE+++ L++ G+KA YH + R F+RD++ V+ AT+AFGMGIDKPDVR+
Sbjct: 245 TTEELAEKLRRAGIKALPYHADLPDTVRSATQEKFVRDDVEVVCATVAFGMGIDKPDVRY 304
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI-ME 358
VIHY PK LE+YYQE+GR GRDG AS C ++Y+ ++ K + T+ + + M+
Sbjct: 305 VIHYDMPKNLEAYYQETGRAGRDGEASDCIMFYSPADALKMRGLLEKEYTDYHLSRVAMK 364
Query: 359 SLLAAQRYCLLTTCRR 374
A + +C CRR
Sbjct: 365 KWQAMRDFCETRLCRR 380
>gi|374853612|dbj|BAL56515.1| ATP-dependent DNA helicase RecQ [uncultured Bacteroidetes
bacterium]
Length = 717
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 159/375 (42%), Positives = 235/375 (62%), Gaps = 8/375 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
L++YFGY FR Q+++I+ ++E ++ +V+M TG+GKSLCYQLP L+ TALVVSPL
Sbjct: 6 EALERYFGYKSFRQPQEEIIRTLLEGKNVMVIMPTGAGKSLCYQLPALLLPGTALVVSPL 65
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTD---SSVQTKAETGYFQLLFMTPEKACIIPISFW 119
I+LM++QV ++ I A FL S+ + V+ G +LL++ PE ++ SF
Sbjct: 66 IALMKNQVDQMQAYDIPAAFLNSSLSRREYEEVKRACLQGKVKLLYVAPE--TLLSESFA 123
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
L + + AVDEAHCISEWGHDFR EY+++ L +P +ALTATAT +V+ DI
Sbjct: 124 EVLAQLQISFVAVDEAHCISEWGHDFRPEYRRIRHALRDLPPMPIIALTATATPRVQRDI 183
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+ +L++ + V SF+R NL+Y + Q+ + E+VQ I AG IVYC + +
Sbjct: 184 LENLEILDAVVFRTSFNRPNLYYQITPKRSHQATLKEIVQYIRSRPGQAG--IVYCHSRR 241
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
VE+++ L+ G+KA YH M + R F+ +EI+V+VAT+AFGMGIDKPDVR
Sbjct: 242 RVEDVANILQANGIKALPYHAGMDAATRTRNQDAFLNEEIQVIVATIAFGMGIDKPDVRF 301
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIH+ PK++E+YYQE+GR GRDG+ + C LYY ++ K D + + + ++R AI+
Sbjct: 302 VIHFDVPKSIENYYQETGRAGRDGLPADCILYYDYNDILKLDRFL-KDKPASEREAIVFL 360
Query: 360 LLAAQRYCLLTTCRR 374
L +C CRR
Sbjct: 361 LQEMAYFCETGQCRR 375
>gi|227501277|ref|ZP_03931326.1| ATP-dependent helicase [Anaerococcus tetradius ATCC 35098]
gi|227216510|gb|EEI81916.1| ATP-dependent helicase [Anaerococcus tetradius ATCC 35098]
Length = 600
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 160/378 (42%), Positives = 230/378 (60%), Gaps = 12/378 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ LKKYFGY FR Q+++I+ I+E +D L V+ TG GKS+CYQLP L+ +LV+S
Sbjct: 6 LLENLKKYFGYDSFREGQEEIIENILEGKDVLGVLPTGGGKSICYQLPSLIMDGISLVIS 65
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQ---TKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L++ GI A F+ S+ + + + T ++G +L++++PE+ +
Sbjct: 66 PLISLMKDQVDALEENGIAATFINSSLSLEAYRQSLTDIKSGKVKLVYISPER---LENE 122
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
F+ +K + AVDEAHCIS+WGHDFR YK + KL L V A TATAT VR
Sbjct: 123 FFRDFIKEVKISFIAVDEAHCISQWGHDFRPSYKLIAKLYDILGKVQVTAFTATATRMVR 182
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DIIN+LKLK+P+V + FDRKNL + V+ S++ + +++ S I+Y
Sbjct: 183 EDIINNLKLKSPFVRVTGFDRKNLSFQVQKPKNKLSYLKDYIKD-----HEDDSGIIYAS 237
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
T K V+ I K+LK +G+ G YH M + R+ FI D+ +++VAT AFGMGIDK +
Sbjct: 238 TRKRVDAIYKSLKSMGLAVGRYHAGMSEEERKLNQEAFIYDDKKIIVATNAFGMGIDKSN 297
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR+VIHY PK +ESYYQE+GR GRDG AS C L Y+ + + +
Sbjct: 298 VRYVIHYNMPKDMESYYQEAGRAGRDGEASDCILLYSGQDIIINKHLINLGRNPVYKKIQ 357
Query: 357 MESLLAAQRYCLLTTCRR 374
+E L + Y +TC R
Sbjct: 358 LEKLQSIINYVNTSTCLR 375
>gi|375109707|ref|ZP_09755949.1| ATP-dependent DNA helicase [Alishewanella jeotgali KCTC 22429]
gi|374570229|gb|EHR41370.1| ATP-dependent DNA helicase [Alishewanella jeotgali KCTC 22429]
Length = 605
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 150/377 (39%), Positives = 233/377 (61%), Gaps = 10/377 (2%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+++ LK+ FGYS +R Q+++I +++ RDC V++ TG GKSLCYQLP L LVVS
Sbjct: 5 LLAVLKQSFGYSSWRNGQQEIISAVLQGRDCFVLLPTGGGKSLCYQLPALQLPGVTLVVS 64
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQ---TKAETGYFQLLFMTPEKACIIPIS 117
PL+SLM+DQV SL+ GI A ++ S+ + +V + G +LL++ PE+ ++ S
Sbjct: 65 PLMSLMKDQVDSLRANGIAAAYVNSSLSREAVLDVLNQLRYGELKLLYVAPER--LLQPS 122
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
F +L + GV LFA+DEAHCIS+WGHDFR +Y L +L+ GVPF+ALTATA +
Sbjct: 123 FLERLQEVGVSLFAIDEAHCISQWGHDFRPDYMALSQLKQRFPGVPFIALTATADPATQQ 182
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI+ L L NPY+ SFDR N+ Y V+ R +++L+ + + +G I+YC +
Sbjct: 183 DILQQLGLSNPYIHRGSFDRPNIRYTVQEKFRP---LEQLLAYLKQQENQSG--IIYCSS 237
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
+ V+E++ L++ G K YH S R+ F RD+I ++VAT+AFGMG+DKP++
Sbjct: 238 RRKVDELTAQLQERGYKVAAYHAGHDSTERQRVQDAFKRDDINLIVATVAFGMGVDKPNI 297
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R V+H+ P+T+E+YYQE+GR GRDG+A+ L + ++ + + + + +
Sbjct: 298 RFVVHFELPRTIEAYYQETGRAGRDGVAAEAVLLFDPADIGRMKRWLEAEENPGRAEVVW 357
Query: 358 ESLLAAQRYCLLTTCRR 374
+ L+ + TCRR
Sbjct: 358 QRFLSMAAFAEAQTCRR 374
>gi|261494329|ref|ZP_05990823.1| ATP-dependent helicase RecQ [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261309978|gb|EEY11187.1| ATP-dependent helicase RecQ [Mannheimia haemolytica serotype A2
str. OVINE]
Length = 599
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 162/378 (42%), Positives = 225/378 (59%), Gaps = 14/378 (3%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+S L FGY FR Q++VI ++E RDCLV+M TG GKSLCYQ+P L LV+SP
Sbjct: 6 ISVLNNVFGYQKFRDGQEEVINAVLENRDCLVIMTTGGGKSLCYQVPALCLDGITLVISP 65
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L GI A +L S QT V+ KA +G +LL+++PEK ++ F
Sbjct: 66 LISLMKDQVDQLITNGIEAAYLNSTQTLEEQQLVEQKALSGQLKLLYLSPEK--VMTQGF 123
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + + AVDEAHC+S+WGHDFR EY L LR VP +ALTATA R D
Sbjct: 124 FHFISLCKISFIAVDEAHCVSQWGHDFRPEYTLLGGLRNTFPDVPLMALTATADPTTRSD 183
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSF--VDELVQEILKSVAGAGSIIVYCM 236
I++ L+L +P++ + SFDR N+ Y V+ + F +++L++ I K +G IVYC
Sbjct: 184 ILHHLRLNSPHIYLGSFDRPNIRYTVQ-----EKFKPLEQLIKFISKQQGKSG--IVYCN 236
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K VEEI++ L + YH M + RE F RD+I+++VAT+AFGMGI+K +
Sbjct: 237 SRKKVEEITEKLSARKISVMGYHAGMSFEQRERVQNAFQRDDIQIVVATIAFGMGINKSN 296
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR V+H+ P+++ESYYQE+GR GRD + S L+Y S++A E QR
Sbjct: 297 VRFVVHFDLPRSIESYYQETGRAGRDDLPSEAVLFYDPSDYAWLQKILLEEPESEQRNIK 356
Query: 357 MESLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 357 QHKLQAIGDFAESQTCRR 374
>gi|336406152|ref|ZP_08586813.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 1_1_30]
gi|423216120|ref|ZP_17202645.1| ATP-dependent DNA helicase RecQ [Bacteroides xylanisolvens
CL03T12C04]
gi|295085102|emb|CBK66625.1| ATP-dependent DNA helicase, RecQ-like [Bacteroides xylanisolvens
XB1A]
gi|335935401|gb|EGM97353.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 1_1_30]
gi|392690971|gb|EIY84222.1| ATP-dependent DNA helicase RecQ [Bacteroides xylanisolvens
CL03T12C04]
Length = 602
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 167/380 (43%), Positives = 233/380 (61%), Gaps = 17/380 (4%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M TLK YFGY FRP Q+++I+ I+ K+D LV+M TG GKS+CYQLP L+ TA+VVS
Sbjct: 1 MRETLKTYFGYDNFRPLQEEIIRHILNKQDALVLMPTGGGKSICYQLPALLCEGTAVVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L GI A L S+ ++ +++ G +LL+++PEK ++
Sbjct: 61 PLISLMKDQVEALLANGIAAGALNSSNDETENANLRRACIEGRLKLLYISPEKL----LA 116
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
LL+ + LFA+DEAHCIS+WGHDFR EY Q+ L +P VALTATA + R
Sbjct: 117 EKDYLLRDMNISLFAIDEAHCISQWGHDFRPEYTQMGVLHQQFPQIPIVALTATADKITR 176
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVA--GAGSIIVY 234
DI+ L L +P I+SFDR N+ VK RG E + IL+ + G S I+Y
Sbjct: 177 EDIVRQLHLNHPRTFISSFDRPNISLTVK---RGFQ-AKEKNKAILEFIHRHGEESGIIY 232
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
CM+ E +++ L++ G++ G YH + ++ R+E FI D I+V+ AT+AFGMGIDK
Sbjct: 233 CMSRSKTETVAQMLQKQGIRCGVYHAGLSTQHRDETQNDFINDRIQVVCATIAFGMGIDK 292
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
+VR VIHY PK++ES+YQE GR GRDG+ S L+Y+ + + ES NQ+
Sbjct: 293 SNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSNTVLFYSLGDLILLTKFASES---NQQN 349
Query: 355 AIMESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 350 INLEKLQRMQQYAEADICRR 369
>gi|357060591|ref|ZP_09121359.1| ATP-dependent DNA helicase RecQ [Alloprevotella rava F0323]
gi|355375896|gb|EHG23164.1| ATP-dependent DNA helicase RecQ [Alloprevotella rava F0323]
Length = 608
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 235/376 (62%), Gaps = 11/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ LKKYFGY+ FRP Q ++I ++ RDC V+M TG GKS+CYQ+P + +VVSP
Sbjct: 4 LQALKKYFGYNSFRPKQAEIIDTVLGGRDCFVLMPTGGGKSVCYQIPAALLPGLTIVVSP 63
Query: 62 LISLMQDQVMSLKQRGINAEFLGSA-QTDSSVQTKAE--TGYFQLLFMTPEKACIIPISF 118
LISLM+DQV SL + GI A + S+ + SVQ + G ++L++++PE A + +
Sbjct: 64 LISLMKDQVESLLEAGIPACAINSSLPLEQSVQLQEACVNGAYKLVYLSPE-ALLASLHG 122
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
W + +A + L A+DEAHCIS+WGHDFR EY QL ++R L VP +ALTATA + R D
Sbjct: 123 W--ISRAKISLVAIDEAHCISQWGHDFRPEYTQLGEIRRDLPNVPMMALTATADKVTRED 180
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L L NPY++++SFDR NL V G + +++ + + AG I+YCM+
Sbjct: 181 ILQQLGLHNPYISVSSFDRPNLSLTVIRGFNGSEKLKAILRFLRERPGQAG--IIYCMSR 238
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K E +++ L GV+A +YH + + R++ FI D+++++VAT+AFGMGIDK +VR
Sbjct: 239 KTTESVAEKLTAKGVRALSYHAGLSADVRDKTQTAFINDDVQIIVATVAFGMGIDKSNVR 298
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+HY PK++ESYYQE GR GRDG + L+Y ++ + + + +Q Q+ ME
Sbjct: 299 WVVHYNLPKSIESYYQEIGRAGRDGDPADTLLFYNYADIIQLERF---AQDSGQQNINME 355
Query: 359 SLLAAQRYCLLTTCRR 374
L + Y + CRR
Sbjct: 356 RLNRMREYAEASVCRR 371
>gi|298480716|ref|ZP_06998912.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. D22]
gi|298273150|gb|EFI14715.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. D22]
Length = 621
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 167/380 (43%), Positives = 233/380 (61%), Gaps = 17/380 (4%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M TLK YFGY FRP Q+++I+ I+ K+D LV+M TG GKS+CYQLP L+ TA+VVS
Sbjct: 20 MRETLKTYFGYDNFRPLQEEIIRHILNKQDALVLMPTGGGKSICYQLPALLCEGTAVVVS 79
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L GI A L S+ ++ +++ G +LL+++PEK ++
Sbjct: 80 PLISLMKDQVEALLANGIAAGALNSSNDETENANLRRACIEGRLKLLYISPEKL----LA 135
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
LL+ + LFA+DEAHCIS+WGHDFR EY Q+ L +P VALTATA + R
Sbjct: 136 EKDYLLRDMNISLFAIDEAHCISQWGHDFRPEYTQMGVLHQQFPQIPIVALTATADKITR 195
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVA--GAGSIIVY 234
DI+ L L +P I+SFDR N+ VK RG E + IL+ + G S I+Y
Sbjct: 196 EDIVRQLHLNHPRTFISSFDRPNISLTVK---RGFQ-AKEKNKAILEFIHRHGEESGIIY 251
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
CM+ E +++ L++ G++ G YH + ++ R+E FI D I+V+ AT+AFGMGIDK
Sbjct: 252 CMSRSKTETVAQMLQKQGIRCGVYHAGLSTQHRDETQNDFINDRIQVVCATIAFGMGIDK 311
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
+VR VIHY PK++ES+YQE GR GRDG+ S L+Y+ + + ES NQ+
Sbjct: 312 SNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSNTVLFYSLGDLILLTKFASES---NQQN 368
Query: 355 AIMESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 369 INLEKLQRMQQYAEADICRR 388
>gi|255690250|ref|ZP_05413925.1| ATP-dependent DNA helicase RecQ [Bacteroides finegoldii DSM 17565]
gi|260624270|gb|EEX47141.1| ATP-dependent DNA helicase RecQ [Bacteroides finegoldii DSM 17565]
Length = 601
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 163/378 (43%), Positives = 233/378 (61%), Gaps = 13/378 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M TLK YFGY FRP Q+++I+ I++K+D LV+M TG GKS+CYQLP L++ TA+VVS
Sbjct: 1 MRDTLKTYFGYDSFRPLQEEIIRHILDKQDALVLMPTGGGKSICYQLPALLSEGTAIVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L+ GI A L S+ ++ +++ G +LL+++PEK ++
Sbjct: 61 PLISLMKDQVEALQANGIAAGALNSSNDETENANLRRSCVAGKLKLLYISPEKL----LA 116
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
LL+ + LFA+DEAHCIS+WGHDFR EY Q+ L VP +ALTATA + R
Sbjct: 117 EKDYLLRDMNISLFAIDEAHCISQWGHDFRPEYTQMGVLHQQFPQVPIIALTATADKITR 176
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DII L L P I+SFDR N+ VK + + +++ I + G S I+YCM
Sbjct: 177 EDIIRQLHLIRPRTFISSFDRPNISLTVKRGFQTKEKNKAIIEFIQRH--GKESGIIYCM 234
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ E +++ L + G++ G YH + ++ R+E FI D I+V+ AT+AFGMGIDK +
Sbjct: 235 SRNKTETVAQTLLKQGIRCGVYHAGLSAQQRDETQNDFINDRIQVVCATIAFGMGIDKSN 294
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY PK++ES+YQE GR GRDG+ S L+Y+ + + ES +Q+
Sbjct: 295 VRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTVLFYSLGDLILLTKFASES---SQQKIN 351
Query: 357 MESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 352 LEKLQRMQQYAEADICRR 369
>gi|254361946|ref|ZP_04978077.1| ATP-dependent helicase RecQ [Mannheimia haemolytica PHL213]
gi|452745568|ref|ZP_21945402.1| ATP-dependent DNA helicase RecQ [Mannheimia haemolytica serotype 6
str. H23]
gi|153093493|gb|EDN74473.1| ATP-dependent helicase RecQ [Mannheimia haemolytica PHL213]
gi|452086443|gb|EME02832.1| ATP-dependent DNA helicase RecQ [Mannheimia haemolytica serotype 6
str. H23]
Length = 599
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 162/378 (42%), Positives = 225/378 (59%), Gaps = 14/378 (3%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+S L FGY FR Q++VI ++E RDCLV+M TG GKSLCYQ+P L LV+SP
Sbjct: 6 ISVLNNIFGYQKFRDGQEEVINAVLENRDCLVIMTTGGGKSLCYQVPALCLDGITLVISP 65
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L GI A +L S QT V+ KA +G +LL+++PEK ++ F
Sbjct: 66 LISLMKDQVDQLITNGIEAAYLNSTQTLEEQQLVEQKALSGQLKLLYLSPEK--VMTQGF 123
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + + AVDEAHC+S+WGHDFR EY L LR VP +ALTATA R D
Sbjct: 124 FHFISLCKISFIAVDEAHCVSQWGHDFRPEYTLLGGLRNTFPNVPLMALTATADLTTRSD 183
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSF--VDELVQEILKSVAGAGSIIVYCM 236
I++ L+L +P++ + SFDR N+ Y V+ + F +++L++ I K +G IVYC
Sbjct: 184 ILHHLRLNSPHIYLGSFDRPNIRYTVQ-----EKFKPLEQLIKFISKQQGKSG--IVYCN 236
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K VEEI++ L + YH M + RE F RD+I+++VAT+AFGMGI+K +
Sbjct: 237 SRKKVEEITEKLSARKISVMGYHAGMSFEQRERVQNAFQRDDIQIVVATIAFGMGINKSN 296
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR V+H+ P+++ESYYQE+GR GRD + S L+Y S++A E QR
Sbjct: 297 VRFVVHFDLPRSIESYYQETGRAGRDDLPSEAVLFYDPSDYAWLQKILLEEPESEQRNIK 356
Query: 357 MESLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 357 QHKLQAIGDFAESQTCRR 374
>gi|20093292|ref|NP_619367.1| DNA helicase RecQ [Methanosarcina acetivorans C2A]
gi|19918649|gb|AAM07847.1| DNA helicase RecQ [Methanosarcina acetivorans C2A]
Length = 909
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 163/385 (42%), Positives = 238/385 (61%), Gaps = 20/385 (5%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M S L++YFGY+ FRP Q+++I+ +++++D V+M TG GKS+CYQLP L+ +VVS
Sbjct: 25 MHSVLRQYFGYTAFRPLQEEIIRDVLDRKDVFVLMPTGGGKSICYQLPSLLLDGVTVVVS 84
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIP-- 115
PLISLM+DQV L+ GI A + S Q+ V++ ++L++ PE+ ++P
Sbjct: 85 PLISLMKDQVDGLEANGIAAACMNSTQSAREIRDVKSAFLENRLKILYIAPER-LMMPGT 143
Query: 116 ISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR---TFLLGVPFVALTATAT 172
I+F L K + LFA+DEAHCISEWGHDFR EY++L LR T VP +ALTATAT
Sbjct: 144 ITF---LKKGKISLFAIDEAHCISEWGHDFRPEYRKLKLLRDPKTGFPDVPVIALTATAT 200
Query: 173 EKVRIDIINSLKLK-NPY--VTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAG 229
+VR DII L L +P + +ASF+R NL+Y V+ + +F E+ +L+ AG
Sbjct: 201 GRVRKDIIVQLGLDLDPEKGLYVASFNRSNLYYEVRP--KKDTF-SEITDYLLRHRGEAG 257
Query: 230 SIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFG 289
I+YC + +VE ++K L G +A YH + R +FI+D++ ++VAT+AFG
Sbjct: 258 --IIYCQSRNNVETLTKKLNLAGFRALPYHAGLSDSERSRNQEMFIKDDVDIIVATIAFG 315
Query: 290 MGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQT 349
MGIDK +VR VIHY P+ LESYYQE+GR GRDG C L+++R + K +++ +
Sbjct: 316 MGIDKSNVRFVIHYDLPRNLESYYQETGRGGRDGSPCECILFFSRGDRFKIEYFIAQKTN 375
Query: 350 ENQRTAIMESLLAAQRYCLLTTCRR 374
E ++ + L YC CRR
Sbjct: 376 EKEKDISLVQLRQMVAYCEGNKCRR 400
>gi|270293488|ref|ZP_06199690.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. D20]
gi|270274955|gb|EFA20815.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. D20]
Length = 603
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 160/378 (42%), Positives = 233/378 (61%), Gaps = 13/378 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ TLK YFGY FRP Q+D+I+ +++++D LV+M TG GKS+CYQLP L++ TA+VVS
Sbjct: 1 MLQTLKTYFGYDSFRPLQEDIIRHLMDRKDALVLMPTGGGKSICYQLPALLSEGTAVVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L GI A L S ++ S++ G +LL+++PEK ++
Sbjct: 61 PLISLMKDQVETLCANGIAAGALNSNNDETENASLRRACMEGKLKLLYISPEKL----LA 116
Query: 118 FWSKLLKA-GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
+ LL+ + LFA+DEAHCIS+WGHDFR EY Q+ L VP +ALTATA + R
Sbjct: 117 EANYLLRDIHISLFAIDEAHCISQWGHDFRPEYTQMGILHQLFPQVPIIALTATADKITR 176
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DII L L P + I+SFDR NL VK + + ++ I + +G I+YCM
Sbjct: 177 EDIIKQLHLNQPRIFISSFDRPNLSLTVKRGYQQKEKSKAILDFIARHPGESG--IIYCM 234
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ E +++ L++ G+++ YH + R+EA FI D ++ + AT+AFGMGIDK +
Sbjct: 235 SRSKTESVAQMLQKHGIRSAVYHAGLSPARRDEAQDDFINDRVQAVCATIAFGMGIDKSN 294
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY PK++ES+YQE GR GRDG+ S L+Y+ ++ + +S Q++
Sbjct: 295 VRWVIHYNLPKSIESFYQEIGRAGRDGMPSDTLLFYSLADLILLTKFATDS---GQQSIN 351
Query: 357 MESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 352 LEKLQRMQQYAEADICRR 369
>gi|391232165|ref|ZP_10268371.1| ATP-dependent DNA helicase RecQ [Opitutaceae bacterium TAV1]
gi|391221826|gb|EIQ00247.1| ATP-dependent DNA helicase RecQ [Opitutaceae bacterium TAV1]
Length = 620
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 154/378 (40%), Positives = 232/378 (61%), Gaps = 12/378 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+++TL FGYS FRP Q+++I+ + RD ++ TG GKS+C+QLP L +VVS
Sbjct: 4 LLNTLHTTFGYSGFRPLQREIIEASLAGRDVFALLPTGGGKSMCFQLPALHRTGLTVVVS 63
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKA---ETGYFQLLFMTPEKACIIPIS 117
PLI+LM+DQV L+ G+ A +L S+ T +++ G ++LL++ PE+ + +
Sbjct: 64 PLIALMKDQVDQLQAAGVAATYLNSSLTSGEARSRLAGLHRGEWRLLYVAPER---LMLD 120
Query: 118 FWSKLLKA-GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
W + L+A V A+DEAHCISEWGHDFR EY+Q+ +LR FL VP +ALTATAT +VR
Sbjct: 121 NWQENLRAWNVAALAIDEAHCISEWGHDFRPEYRQIARLREFLPEVPVMALTATATGRVR 180
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DI+ L+L+ P V +ASF+R NL Y +V+ + Q + +++ + K +G I+YC
Sbjct: 181 EDIVKHLQLREPAVYVASFNRPNLSY--RVLPKDQP-LKQIIDFVKKREDESG--IIYCA 235
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
T E+ +++L G A YH + + R LF+RD+++++ AT+AFGMGI+KP+
Sbjct: 236 TRATAEKTAESLASRGYAARPYHAGLSADDRSANQELFLRDDVKIICATIAFGMGINKPN 295
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIH+ PK +E YYQE+GR GRDG+ + C L Y+ + K + E +++
Sbjct: 296 VRWVIHHDLPKNIEGYYQETGRAGRDGLPADCLLLYSAGDIVKQTHFIDEITDAHEQQVA 355
Query: 357 MESLLAAQRYCLLTTCRR 374
L Y TTCRR
Sbjct: 356 RRQLRLMSHYAEDTTCRR 373
>gi|380696494|ref|ZP_09861353.1| ATP-dependent DNA helicase RecQ [Bacteroides faecis MAJ27]
Length = 601
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 161/378 (42%), Positives = 234/378 (61%), Gaps = 13/378 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M TLK YFGY FRP Q+++I+ ++ K+D LV+M TG GKS+CYQLP L++ T +VVS
Sbjct: 1 MKETLKTYFGYDSFRPLQEEIIRHVLNKQDALVLMPTGGGKSICYQLPALLSEGTTVVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L+ GI A L S+ ++ +++ G +LL+++PEK I+
Sbjct: 61 PLISLMKDQVETLQANGIAAGALNSSNDETENANLRRACVEGRLKLLYISPEKL----IA 116
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
LL+ + LFA+DEAHCIS+WGHDFR EY Q+ L +P +ALTATA + R
Sbjct: 117 EKDYLLRDMSISLFAIDEAHCISQWGHDFRPEYTQMGMLHQQFPQIPIIALTATADKITR 176
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DII L L P I+SFDR N+ VK + + +++ I + +G I+YCM
Sbjct: 177 EDIIRQLHLVQPRTFISSFDRPNISLDVKRGFQAKEKNKAILEFIHRHREESG--IIYCM 234
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ E +++ L++ G++ G YH + S+ R+E FI D I+V+ AT+AFGMGI+K +
Sbjct: 235 SRNKTETVAQMLQKQGIRCGVYHAGLSSQHRDETQNDFINDRIQVVCATIAFGMGINKSN 294
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY PK++ES+YQE GR GRDG++S L+Y+ + + ES +Q+T
Sbjct: 295 VRWVIHYNLPKSIESFYQEIGRAGRDGLSSDTVLFYSLGDLILLTKFATES---SQQTIN 351
Query: 357 MESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 352 LEKLQRMQQYAEADICRR 369
>gi|157134860|ref|XP_001656478.1| werner syndrome helicase [Aedes aegypti]
gi|108881338|gb|EAT45563.1| AAEL003152-PA [Aedes aegypti]
Length = 968
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 168/378 (44%), Positives = 235/378 (62%), Gaps = 14/378 (3%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ L+ +FG+S FRP Q +I+ IIE +RD V+MATG GKSL YQ P + + LV+S
Sbjct: 12 LAALESHFGHSNFRPMQWTIIRSIIEDRRDNCVIMATGYGKSLTYQYPSVFLQRLTLVIS 71
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+SL I + LGSAQ + V + G F+++++TPE +
Sbjct: 72 PLISLMEDQVLSLNLSNIPSCLLGSAQRANPV-PDIKAGKFRVVYLTPEYVTGESGKYLL 130
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
+ + + L A+DEAHC+S+WGHDFR Y+ L +R + VP +A+TATAT VR DI+
Sbjct: 131 EQVANQLVLIAIDEAHCLSKWGHDFRPAYRNLGVIRKWCPRVPILAVTATATPNVRDDIV 190
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
SL L NP V FDR NL + VK+ + + E V+ +L S GSII+YC+T K
Sbjct: 191 TSLGLWNPQVLCTGFDRPNLQFHVKM--KSSLGIWEDVKGLL-SRNVEGSIIIYCLTRKQ 247
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
EEI + L+ + YH +G K R E H F+RD ++++VAT+AFGMGIDKPDVR V
Sbjct: 248 TEEIVELLRSKKIDCEPYHAGLGLKQRREVHESFVRDRVQIIVATIAFGMGIDKPDVRLV 307
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+HYG K LESYYQE+GR GRDG S C ++++R+ DF E E+ + + ++L
Sbjct: 308 VHYGASKDLESYYQEAGRAGRDGQPSKCVMFWSRA-----DFKTHEILREHNQGGVQKNL 362
Query: 361 --LAAQRYCLLTT--CRR 374
L+ + Y L T CRR
Sbjct: 363 EALSKKMYEYLDTRDCRR 380
>gi|335042077|ref|ZP_08535104.1| superfamily II DNA helicase [Methylophaga aminisulfidivorans MP]
gi|333788691|gb|EGL54573.1| superfamily II DNA helicase [Methylophaga aminisulfidivorans MP]
Length = 708
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 154/377 (40%), Positives = 232/377 (61%), Gaps = 10/377 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L+ FGY+ FR Q D+++ +I+ D LV+M TG GKSLCYQ+P L+ T +VVSP
Sbjct: 9 LDVLQNIFGYNGFRHNQHDIVEHVIQGGDALVLMPTGGGKSLCYQIPALIRPGTGIVVSP 68
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISF 118
LI+LMQDQV++L + G+ A FL S+ + S SV+ + E G +L++ PE+ ++
Sbjct: 69 LIALMQDQVVALNELGVKAAFLNSSLSASEAYSVEQQLEDGLIDVLYIAPER--LLNERT 126
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
S L + + LFA+DEAHC+S+WGHDFR EY++L +L VP +ALTATA ++ R +
Sbjct: 127 ISLLSRVTISLFAIDEAHCVSQWGHDFRPEYQRLRQLHERFPNVPRIALTATADKRTRQE 186
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
II L L+ V + SFDR N+FY + + + + + ++E + AG IVYC++
Sbjct: 187 IIEQLNLQQANVYLNSFDRHNIFYAITEASHAKQQLWQFIEEHHANDAG----IVYCLSR 242
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K VE I++ L++ G A YH + ++ R + + F+R+E ++VAT+AFGMGIDKPDVR
Sbjct: 243 KKVEAIAEWLQEQGRVALPYHAGLSNEVRAKHQQRFLREEAVIIVATIAFGMGIDKPDVR 302
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V H PK +E+YYQE+GR GRDG+ + W+ Y + + +S + + +
Sbjct: 303 FVAHLNLPKNIEAYYQETGRAGRDGLPANAWMAYGLQDVITLRQFMQDSNAPDMIKRVEQ 362
Query: 359 SLLAAQR-YCLLTTCRR 374
L A C L TCRR
Sbjct: 363 HKLDAMLGLCELITCRR 379
>gi|226326677|ref|ZP_03802195.1| hypothetical protein PROPEN_00530 [Proteus penneri ATCC 35198]
gi|225204898|gb|EEG87252.1| ATP-dependent DNA helicase RecQ [Proteus penneri ATCC 35198]
Length = 600
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 161/375 (42%), Positives = 225/375 (60%), Gaps = 10/375 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ L++ FGY FRP Q++VI I RDCLVVM TG GKSLCYQ+P L+ +VVSPL
Sbjct: 6 AILRETFGYQQFRPGQQEVIHTITTGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPL 65
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLM+DQV L GI A +L S QT VQ + + G +LL++ PE+ ++ SF
Sbjct: 66 ISLMKDQVDQLCLHGIEAAYLNSTQTREEQLDVQIRCQKGEIKLLYIAPER--LMMESFL 123
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L++ L AVDEAHCIS+WGHDFR EY+ + LR ++ VP +ALTATA R DI
Sbjct: 124 HQLVQWKPVLLAVDEAHCISQWGHDFRPEYRGIGLLRQYIADVPIIALTATADNTTRYDI 183
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
IN L L++P + I+SFDR N+ Y + +D+L I +G I+YC +
Sbjct: 184 INQLVLRDPLIHISSFDRPNIRY---TLVEKYKPLDQLWLFIRGQKGKSG--IIYCNSRS 238
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
VEE ++ L + G+ YH M R + F RD+++++VAT+AFGMGI+KP+VR
Sbjct: 239 KVEETAERLSKRGLSIAGYHAGMEIAQRAKVQEAFQRDDLQIVVATVAFGMGINKPNVRF 298
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A E +Q+ M
Sbjct: 299 VVHFDIPRNIESYYQETGRAGRDGLPAEAVLFYDPADMAWLRRCLDEKPESDQKAIEMHK 358
Query: 360 LLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 359 LNAMGAFAEAQTCRR 373
>gi|441498157|ref|ZP_20980358.1| ATP-dependent DNA helicase RecQ [Fulvivirga imtechensis AK7]
gi|441438064|gb|ELR71407.1| ATP-dependent DNA helicase RecQ [Fulvivirga imtechensis AK7]
Length = 728
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 164/379 (43%), Positives = 233/379 (61%), Gaps = 19/379 (5%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
S LK+ FGY+ FR Q+ +I I+ R+ V+M TG+GKSLCYQLP LVT A+V+SPL
Sbjct: 11 SKLKEVFGYNQFRGNQEAIINNILNGRNTFVIMPTGAGKSLCYQLPALVTDGLAIVISPL 70
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSV-QTKAET--GYFQLLFMTPEKACIIP-ISF 118
I+LM++QV L G+NA+FL S T + + + K ET G +LL++ PE I F
Sbjct: 71 IALMKNQVDQLNAFGVNAQFLNSTLTKAEMNRVKKETLDGSIKLLYVAPESLTKEENIDF 130
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
L KA V AVDEAHCISEWGHDFR EY+++ ++ L +P +ALTATAT KV++D
Sbjct: 131 ---LKKANVSFVAVDEAHCISEWGHDFRPEYRRIKEIIGLLGNLPIIALTATATPKVQLD 187
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I +L ++ V +SF+R NLFY V+ + +L+Q + +G IVYC++
Sbjct: 188 IQKNLHMEGADVFKSSFNRTNLFYEVRQKKHAKK---QLIQFLRDHKGKSG--IVYCLSR 242
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K V EI++ L G KA YH + RE+ F+ +++ ++VAT+AFGMGIDKPDVR
Sbjct: 243 KKVVEIAELLNVNGFKAAPYHAGLEPAVREKNQDDFLNEDVDIVVATIAFGMGIDKPDVR 302
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGE---SQTENQRTA 355
V+HY PK+LE YYQE+GR GRDG+ C ++Y+ ++ K + + + + EN R
Sbjct: 303 FVVHYDVPKSLEGYYQETGRSGRDGLEGKCLMFYSHNDINKLEKFNKDKPVQERENARVL 362
Query: 356 IMESLLAAQRYCLLTTCRR 374
+ E A+ CRR
Sbjct: 363 LQEMSFYAES----PVCRR 377
>gi|33151690|ref|NP_873043.1| ATP-dependent DNA helicase [Haemophilus ducreyi 35000HP]
gi|33147911|gb|AAP95432.1| ATP-dependent DNA helicase [Haemophilus ducreyi 35000HP]
Length = 601
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 161/375 (42%), Positives = 226/375 (60%), Gaps = 14/375 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L FGY FR Q++VI+ ++ +DCLV+M TG GKSLCYQ+P L LV+SPLIS
Sbjct: 12 LNNIFGYQHFRNGQQEVIEAVLTGQDCLVIMTTGGGKSLCYQVPALCLEGITLVISPLIS 71
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L GI A ++ +QT V+ KA +G +LL+++PEK ++ +F+S
Sbjct: 72 LMKDQVDQLLTYGIEAGYINCSQTFEEQQRVEQKALSGQLKLLYLSPEK--VMTQAFFSF 129
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
+ + L VDEAHC+S+WGHDFR EY L +LR +G+P +ALTATA R DI+
Sbjct: 130 IFHCKISLIVVDEAHCVSQWGHDFRPEYALLGRLRKTFVGIPLMALTATADPTTRKDILQ 189
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSF--VDELVQEILKSVAGAGSIIVYCMTIK 239
L L NPY + SFDR N+ Y V+ Q F +++L Q IL+ +G I+YC + K
Sbjct: 190 HLCLTNPYTYLGSFDRPNIRYTVQ-----QKFKPLEQLTQFILRQQGKSG--IIYCNSRK 242
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
VEEIS+ L + YH M + RE F RD I+++VAT+AFGMGI+K +VR
Sbjct: 243 KVEEISEKLAARKISVMGYHAGMPVQQREMVQEAFQRDNIQIVVATIAFGMGINKSNVRF 302
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V+H+ P+++E+YYQE+GR GRD + S L+Y S++A + E +QR
Sbjct: 303 VVHFDLPRSIEAYYQETGRAGRDDLPSEAVLFYNPSDYAWMEKTLLEEPETDQRQIKQHK 362
Query: 360 LLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 363 LQAIGAFAESQTCRR 377
>gi|114778418|ref|ZP_01453263.1| ATP-dependent DNA helicase RecQ [Mariprofundus ferrooxydans PV-1]
gi|114551262|gb|EAU53820.1| ATP-dependent DNA helicase RecQ [Mariprofundus ferrooxydans PV-1]
Length = 606
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 155/374 (41%), Positives = 222/374 (59%), Gaps = 10/374 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK FGY FR +Q D+I +I +D L +M TG GKS+CYQ+P L+ TA+V+SPLI+
Sbjct: 12 LKATFGYDDFRHHQADIIDALINGQDVLTLMPTGGGKSICYQIPALIRSGTAIVISPLIA 71
Query: 65 LMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV +LKQ G++A FL S A V+ K +G LL+M PE+ ++ +
Sbjct: 72 LMQDQVDALKQLGVSAAFLNSTLNAGEQREVEDKLRSGQLDLLYMAPER--LLNHQMLNM 129
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + LFA+DEAHC+S+WGHDFR EY+QL L VP +ALTATA + R +II+
Sbjct: 130 LDRCKISLFAIDEAHCVSQWGHDFRKEYQQLSMLHERYPEVPRIALTATADARTRGEIIH 189
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L + + SFDR N+ Y + G+ + + + + AG IVYC++ K+V
Sbjct: 190 QLALHQAGIFVNSFDRPNIHYAISEAGNGRDALWHFLSDNHANDAG----IVYCLSRKNV 245
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E ++ L + G A YH + + R + F+R++ ++VAT+AFGMGIDKPDVR V
Sbjct: 246 EATAEWLNEKGRTALPYHAGLAQEVRSRHQQRFLREDGLIIVATIAFGMGIDKPDVRFVA 305
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ-RTAIMESL 360
H PK +ESYYQE+GR GRDG+ S W+ Y + + +S + Q + +++
Sbjct: 306 HMNLPKNIESYYQETGRAGRDGLPSDAWMSYGLQDVINLRLFIEKSDADEQFKRVMLQKT 365
Query: 361 LAAQRYCLLTTCRR 374
A C LT CRR
Sbjct: 366 DAMLGLCELTGCRR 379
>gi|442772186|gb|AGC72851.1| ATP-dependent DNA helicase RecQ [uncultured bacterium A1Q1_fos_97]
Length = 607
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 166/377 (44%), Positives = 226/377 (59%), Gaps = 16/377 (4%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
LK+YFGY FRP Q D+I+ I +D LV+M TG GKS+C+Q+P + T +VVSPLI
Sbjct: 9 ALKRYFGYDQFRPLQADIIRAIFSGKDALVLMPTGGGKSVCFQIPAVTLPGTCIVVSPLI 68
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYF----QLLFMTPEKACIIPISFW 119
SLM+DQV L+ GI A F+ SA DS Q + E ++ LL+++PEK ++ +F
Sbjct: 69 SLMKDQVEGLRANGIAAAFINSA-IDSREQLRVEESFYAGELDLLYVSPEK--LVSGNFV 125
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
S L + + LFA+DEAHCIS WGHDFR EY Q+ L+ VP VALTATA + R DI
Sbjct: 126 SILKRGKINLFAIDEAHCISAWGHDFRPEYTQMGMLKQHFPRVPVVALTATADKLTRKDI 185
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
++ LKL+ P + IASFDR NL V+ GQ + ++ I K AG I+Y ++ K
Sbjct: 186 VDQLKLEEPGIFIASFDRPNLSLEVRP---GQQRLQQIEDFIRKHPKQAG--IIYTLSRK 240
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
E+I+ LKQ G KA YH + R + FI D + ++ AT+AFGMGIDK +VR
Sbjct: 241 ATEDIADKLKQKGFKAEAYHAGLSPDRRSKIQDHFINDNLHIICATVAFGMGIDKSNVRW 300
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA--KGDFYCGESQTENQRTAIM 357
VIHY PK LE YYQE GR GRDG + L+Y+ ++ + + GE+ +N+ +
Sbjct: 301 VIHYNLPKNLEGYYQEIGRAGRDGAKADTLLFYSFADVSMLRDIIQNGENAAQNEIQLV- 359
Query: 358 ESLLAAQRYCLLTTCRR 374
L Q+Y CRR
Sbjct: 360 -KLERMQQYAESLACRR 375
>gi|34495932|ref|NP_900147.1| ATP-dependent DNA helicase RecQ [Chromobacterium violaceum ATCC
12472]
gi|34101786|gb|AAQ58154.1| ATP-dependent DNA helicase recQ [Chromobacterium violaceum ATCC
12472]
Length = 609
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 160/377 (42%), Positives = 226/377 (59%), Gaps = 10/377 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
VS L FGY FR Q+++++++ LV+M TG GKSLCYQ+P L+ A+VVSP
Sbjct: 16 VSILNHIFGYPEFRGQQQEIVEQVAHGGHALVLMPTGGGKSLCYQIPALLRDGVAIVVSP 75
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISF 118
LI+LMQDQV +L++ G+ A L SA + + +A G LL++ PE+ ++ F
Sbjct: 76 LIALMQDQVATLQELGVAAACLNSATSPDEARDIARQARAGTLDLLYVAPER--LLTPRF 133
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + LFA+DEAHC+S WGHDFR EY+QL L VP +ALTATA E+ R+D
Sbjct: 134 QEFIASLKIALFAIDEAHCVSHWGHDFRPEYQQLGLLAEQFPQVPRIALTATADEQTRLD 193
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
II+ LKL V ++SFDR NLFY V + + + + +++ + G IVYC++
Sbjct: 194 IIHYLKLAEARVFLSSFDRPNLFYQVVEKHNAKKQLLDFIRQEHQGATG----IVYCLSR 249
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K VE+ ++ L++ G++A YH M RE RLF+R++ VMVAT+AFGMGIDKPDVR
Sbjct: 250 KRVEDTAQWLRENGIEALAYHAGMSHAEREANQRLFLREDGIVMVATVAFGMGIDKPDVR 309
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAK-GDFYCGESQTENQRTAIM 357
V H PK+ E++YQESGR GRDG+ S WL Y ++ + G E Q+ +
Sbjct: 310 FVAHIDMPKSPENFYQESGRAGRDGLPSASWLCYGLNDVVQLRQMIEGGEMAELQKQVEL 369
Query: 358 ESLLAAQRYCLLTTCRR 374
L A +C CRR
Sbjct: 370 SKLDAMLAFCETAGCRR 386
>gi|417846212|ref|ZP_12492224.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M21639]
gi|341953231|gb|EGT79743.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M21639]
Length = 627
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 160/376 (42%), Positives = 225/376 (59%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+S LK FGY FR Q++VI + +D LVVMATG+GKSLCYQ+P L LV+SP
Sbjct: 25 LSVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQVPALCFEGLTLVISP 84
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ GI A+FL S+QT VQ K +G +LL+++PEK ++ SF
Sbjct: 85 LISLMKDQVDQLQANGIEADFLNSSQTLEQQQRVQNKLISGQLKLLYVSPEK--VMTNSF 142
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + + V A+DEAHCIS+WGHDFR EY QL L+ P +ALTATA R D
Sbjct: 143 FQLISYSKVSFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPHAPIMALTATADHATRQD 202
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L L+NP+ I SFDR N+ Y + +++L + +L +G I+YC +
Sbjct: 203 ILTHLNLENPHRYIGSFDRPNIRY---TLEEKYKPMEQLTRFVLAQKGKSG--IIYCNSR 257
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I+++L+ GV A YH M + RE + F RD ++V+VAT+AFGMGI+K +VR
Sbjct: 258 NKVERIAESLRNKGVSAAAYHAGMETALRERVQQDFQRDNVQVVVATIAFGMGINKSNVR 317
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
+ H+ P+++ESYYQE+GR GRD + + L+Y +++A E +QR
Sbjct: 318 FIAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLEKPETSQRQIEQH 377
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 378 KLEAIGEFAESQTCRR 393
>gi|397781462|ref|YP_006545935.1| ATP-dependent DNA helicase RecQ [Methanoculleus bourgensis MS2]
gi|396939964|emb|CCJ37219.1| ATP-dependent DNA helicase RecQ [Methanoculleus bourgensis MS2]
Length = 417
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 166/375 (44%), Positives = 223/375 (59%), Gaps = 11/375 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++YFG++ FRPYQ+++IQ + E RD L V+ATG GKSLCYQ+P L+ LV+SPLI+
Sbjct: 8 LQRYFGHTAFRPYQQEIIQDLREGRDVLAVLATGGGKSLCYQVPALIGNGVTLVISPLIA 67
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ RGI+AE L S+ + + ++ E Q+L+++PEKA + F +
Sbjct: 68 LMKDQVDDLQARGISAEALNSSCSYVATRRILSELEENVVQILYVSPEKA--VSDDFLAL 125
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
+ + L AVDEAHCIS WGH FR EY+ L L+ VP VALTATAT VR DI
Sbjct: 126 IASLPITLIAVDEAHCISMWGHQFRPEYRSLQVLKERFPQVPMVALTATATPDVRDDIAR 185
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L NP V + SF+R+NL Y V+ + + + L + AG I+Y T
Sbjct: 186 QLNLNNPSVYVGSFNRENLRY--LVVQKEEDVYERLRGYLQGRRTDAG--IIYTATRDGA 241
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E ++ L+ G+ A YH M + ARE H F+ ++ V+ AT AFGMGIDKPDVR V+
Sbjct: 242 ETLAARLQADGIPALPYHAGMTAAARERTHDRFMTGKVPVICATSAFGMGIDKPDVRFVV 301
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAK-GDFYCGESQTENQRTAIMESL 360
HY PKTLE+YYQESGR GRDG S C L+Y + + F + +E QR L
Sbjct: 302 HYDMPKTLEAYYQESGRAGRDGGESDCILFYHDDDAKRLRSFIDRDLPSEFQREVARSKL 361
Query: 361 LAAQRYCLLTT-CRR 374
YC + CRR
Sbjct: 362 QKMVDYCSIAAGCRR 376
>gi|224540740|ref|ZP_03681279.1| hypothetical protein BACCELL_05654 [Bacteroides cellulosilyticus
DSM 14838]
gi|224517639|gb|EEF86744.1| hypothetical protein BACCELL_05654 [Bacteroides cellulosilyticus
DSM 14838]
Length = 602
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 163/380 (42%), Positives = 233/380 (61%), Gaps = 17/380 (4%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ TLK+YFGY FRP Q+++I+ ++ +D LV+M TG GKS+CYQLP L+ TA+VVS
Sbjct: 1 MIQTLKRYFGYDSFRPLQEEIIRTLLAGKDSLVLMPTGGGKSICYQLPALLCEGTAVVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV SL G+ A L S+ ++ +++ G +LL+++PEK I+
Sbjct: 61 PLISLMKDQVESLCANGVAAGALNSSNDETENAALRRSCMEGKLKLLYISPEKL----IA 116
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
+ LL+ + LFA+DEAHCIS+WGHDFR EY Q+ +R +P +ALTATA + R
Sbjct: 117 EANYLLRDMHISLFAIDEAHCISQWGHDFRPEYAQMGFIREMFPNIPVIALTATADKITR 176
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRG--QSFVDELVQEILKSVAGAGSIIVY 234
DI+ L L P V I+SFDR NL VK RG Q + + + + G II Y
Sbjct: 177 EDIVRQLHLNQPKVFISSFDRPNLSLTVK---RGYQQKEKSKAILDFIDRHRGESGII-Y 232
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
CM+ E +++ L++ G++ YH + S R+EA FI D ++++ AT+AFGMGIDK
Sbjct: 233 CMSRSKTETVAQMLQKQGLRVAVYHAGLSSARRDEAQDDFINDRVQIVCATIAFGMGIDK 292
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
+VR VIHY PK++ES+YQE GR GRDG+ S L+Y+ ++ + ES Q+
Sbjct: 293 SNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTLLFYSLADLILLTKFATES---GQQG 349
Query: 355 AIMESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 350 INLEKLQRMQQYAEADVCRR 369
>gi|418054291|ref|ZP_12692347.1| ATP-dependent DNA helicase RecQ [Hyphomicrobium denitrificans
1NES1]
gi|353211916|gb|EHB77316.1| ATP-dependent DNA helicase RecQ [Hyphomicrobium denitrificans
1NES1]
Length = 728
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 163/377 (43%), Positives = 225/377 (59%), Gaps = 10/377 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ L+ FGY FRP Q D+I I+ DCL +M TG GKSLCYQ+P LV T +VVSPL
Sbjct: 25 AKLEDVFGYKGFRPLQGDIIDTILRGGDCLALMPTGGGKSLCYQIPSLVRPGTGIVVSPL 84
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGY----FQLLFMTPEKACIIPISF 118
I+LMQDQV +L+ G+ A FL S Q D S Q + E + LL++ PE+ ++
Sbjct: 85 IALMQDQVDALRDLGVKAAFLNSTQ-DRSTQDQIERQFAADALDLLYVAPER--LVQERT 141
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ +A + LFA+DEAHC+S+WGHDFR EY+QL L VP +ALTATA E+ R D
Sbjct: 142 LALFERADIALFAIDEAHCVSQWGHDFRPEYRQLKILAQRFPSVPRIALTATADERTRQD 201
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
II L L+N IASFDR N+ Y + + G + E + + +++ + + IVYC++
Sbjct: 202 IIAELSLENARSFIASFDRPNIRYTIAELGSGSA--RERLWQFIEAEHSSDAGIVYCLSR 259
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K VEE + L G KA YH + + R A F+ +E ++VAT+AFGMGIDKPDVR
Sbjct: 260 KSVEETAAWLCSKGRKALAYHAGLEAPVRAAAQAKFLTEEGLIIVATIAFGMGIDKPDVR 319
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQ-TENQRTAIM 357
V H PK++ESYYQE+GR GRDG A+ W+ Y + + + G+S+ E +T
Sbjct: 320 FVAHLNLPKSIESYYQETGRAGRDGEAANAWMAYGLQDIVQLRQWIGQSEGPEAFKTVQR 379
Query: 358 ESLLAAQRYCLLTTCRR 374
+ L A + CRR
Sbjct: 380 QKLDALVGLAEMPGCRR 396
>gi|153809531|ref|ZP_01962199.1| hypothetical protein BACCAC_03849 [Bacteroides caccae ATCC 43185]
gi|423219543|ref|ZP_17206039.1| ATP-dependent DNA helicase RecQ [Bacteroides caccae CL03T12C61]
gi|149127839|gb|EDM19062.1| ATP-dependent DNA helicase RecQ [Bacteroides caccae ATCC 43185]
gi|392624748|gb|EIY18826.1| ATP-dependent DNA helicase RecQ [Bacteroides caccae CL03T12C61]
Length = 601
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 162/378 (42%), Positives = 234/378 (61%), Gaps = 13/378 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M TLK YFGY FRP Q+++I+ I+ ++D LV+M TG GKS+CYQLP L+ TA+VVS
Sbjct: 1 MRETLKTYFGYDSFRPLQEEIIRHIMSRQDALVLMPTGGGKSICYQLPALLCEGTAVVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L+ GI A L S+ ++ +++ G +LL+++PEK ++
Sbjct: 61 PLISLMKDQVEALQANGIAAGALNSSNDETENANLRRACIEGRLKLLYISPEKL----LA 116
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
LL+ + LFA+DEAHCIS+WGHDFR EY Q+ L VP VALTATA + R
Sbjct: 117 EKDYLLRDMHISLFAIDEAHCISQWGHDFRPEYTQMGMLHQQFPQVPIVALTATADKITR 176
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DI+ L L +P I+SFDR N+ VK + + +++ I + +G I+YCM
Sbjct: 177 EDIVRQLHLVHPRTFISSFDRPNISLTVKRGFQAKEKNKAILEFINRHSGESG--IIYCM 234
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ E +++ L++ G++ G YH + ++ R+E FI D I+V+ AT+AFGMGIDK +
Sbjct: 235 SRSKTETVAQMLQKQGIRCGVYHAGLSAQKRDETQDDFINDRIQVVCATIAFGMGIDKSN 294
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY PK++ES+YQE GR GRDG+ S L+Y+ + + ES NQ++
Sbjct: 295 VRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTVLFYSLGDLILLTKFATES---NQQSIN 351
Query: 357 MESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 352 LEKLQRMQQYAEADICRR 369
>gi|419839751|ref|ZP_14363154.1| ATP-dependent DNA helicase RecQ [Haemophilus haemolyticus HK386]
gi|386909096|gb|EIJ73776.1| ATP-dependent DNA helicase RecQ [Haemophilus haemolyticus HK386]
Length = 619
Score = 298 bits (762), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 161/376 (42%), Positives = 225/376 (59%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+S LK FGY FR Q++VI + +D LVVMATG+GKSLCYQ+P L LV+SP
Sbjct: 17 LSVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISP 76
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ GI A+FL S+QT VQ K +G +LL+++PEK ++ SF
Sbjct: 77 LISLMKDQVDQLQANGIEADFLNSSQTLEQQQRVQNKLISGQLKLLYVSPEK--VMTNSF 134
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + + V A+DEAHCIS+WGHDFR EY QL L+ P +ALTATA R D
Sbjct: 135 FQLISYSKVSFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPHAPIMALTATADYATRQD 194
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L L+NP+ I SFDR N+ Y + +++L++ +L +G I+YC +
Sbjct: 195 ILTHLNLENPHRYIGSFDRPNIRY---TLEEKYKPMEQLIRFVLAQKGKSG--IIYCNSR 249
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I+++L+ GV A YH M + RE + F RD ++V+VAT+AFGMGI+K +VR
Sbjct: 250 NKVERIAESLRNKGVSAAAYHAGMETAFRERVQQDFQRDNVQVVVATIAFGMGINKSNVR 309
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V H+ P+++ESYYQE+GR GRD + + L+Y +++A E QR
Sbjct: 310 FVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLEKPETPQRQIEQH 369
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 370 KLEAIGEFAESQTCRR 385
>gi|432332157|ref|YP_007250300.1| ATP-dependent DNA helicase RecQ [Methanoregula formicicum SMSP]
gi|432138866|gb|AGB03793.1| ATP-dependent DNA helicase RecQ [Methanoregula formicicum SMSP]
Length = 611
Score = 298 bits (762), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 166/377 (44%), Positives = 223/377 (59%), Gaps = 17/377 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++Y+G F P Q+++I ++ D L ++ATG GKSLCYQLP L G LV+SPLIS
Sbjct: 8 LRQYWGSPSFLPLQEEIIGSVLSGNDTLAILATGGGKSLCYQLPALYLGGLTLVISPLIS 67
Query: 65 LMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ RGI A S+ + + + +LLF++PEK C+ P F S
Sbjct: 68 LMKDQVDDLQARGIPAAAWNSSLDQKERARITGGISDANLRLLFISPEK-CLQP-GFLSS 125
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L A V L A+DEAHCISEWGH+FR EY+QL +++ G+P +ALTATA VR DI
Sbjct: 126 LATARVRLIAIDEAHCISEWGHNFRPEYRQLARIKEVFPGIPLIALTATAIPGVRRDIRQ 185
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFV---DELVQEILKSVAGAGSIIVYCMTI 238
LK++ SF+RKNL Y +V+ + V D L Q +S IVYC++
Sbjct: 186 QLKMECAREFTGSFNRKNLRY--RVVPKKNPLVFLADYLGQHREESG------IVYCLSR 237
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
+ E ++ L+Q G A YH + + RE FIRD ++V+ AT+AFGMGIDKPDVR
Sbjct: 238 SETETVAGDLQQRGFSAAAYHAGLSRQERERVQESFIRDRVQVVCATVAFGMGIDKPDVR 297
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI-M 357
VIHY PKTLE YYQE+GR GRDG S C L Y+R ++A+ + + Q + +
Sbjct: 298 FVIHYDLPKTLEGYYQETGRAGRDGQYSECVLLYSRGDYARIRSLLEQGDSGGQHLKVSL 357
Query: 358 ESLLAAQRYCLLTTCRR 374
L Q YC T CRR
Sbjct: 358 AKLRDMQEYCETTGCRR 374
>gi|329960081|ref|ZP_08298545.1| ATP-dependent DNA helicase RecQ [Bacteroides fluxus YIT 12057]
gi|328533033|gb|EGF59806.1| ATP-dependent DNA helicase RecQ [Bacteroides fluxus YIT 12057]
Length = 603
Score = 298 bits (762), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 161/378 (42%), Positives = 233/378 (61%), Gaps = 13/378 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ TLK YFGY FRP Q+++I+ ++ ++D LV+M TG GKS+CYQLP L+ TA+VVS
Sbjct: 1 MLQTLKTYFGYDSFRPLQEEIIRHLLARKDALVLMPTGGGKSICYQLPALLCEGTAVVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQ---TDSSVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV SL GI A L S +++++ G +LL+++PEK ++
Sbjct: 61 PLISLMKDQVESLVANGIAAGALNSNNDETANAALRRACTEGKLKLLYISPEKL----LA 116
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
+ LL+ + LFA+DEAHCIS+WGHDFR EY Q+ L VP +ALTATA + R
Sbjct: 117 EANYLLRDMHISLFAIDEAHCISQWGHDFRPEYTQMGILHQQFPHVPIIALTATADKITR 176
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DII L L+ P + I+SFDR NL VK + + ++ I + +G ++YCM
Sbjct: 177 EDIIKQLHLEQPKIFISSFDRPNLSLAVKRGYQQKEKSKAILDFIGRHPGESG--VIYCM 234
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ E +++ L++ G+KA YH + + R+ A FI D ++V+ AT+AFGMGIDK +
Sbjct: 235 SRSKTESVAQMLQKQGIKAAVYHAGLSADKRDRAQDDFINDRVQVVCATIAFGMGIDKSN 294
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY PK++ES+YQE GR GRDG+ S L+Y+ ++ + ES Q++
Sbjct: 295 VRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTLLFYSLADLILLTKFATES---GQQSIN 351
Query: 357 MESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 352 IEKLQRMQQYAEADICRR 369
>gi|261867419|ref|YP_003255341.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|365967218|ref|YP_004948780.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|416074416|ref|ZP_11584505.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|416090811|ref|ZP_11588163.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|416103119|ref|ZP_11589174.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|444337220|ref|ZP_21151227.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
gi|444345652|ref|ZP_21153662.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
gi|444348097|ref|ZP_21155856.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
gi|261412751|gb|ACX82122.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|348006870|gb|EGY47245.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|348008390|gb|EGY48666.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|348009101|gb|EGY49290.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|365746131|gb|AEW77036.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|443542609|gb|ELT52921.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
gi|443547331|gb|ELT56848.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
gi|443547710|gb|ELT57152.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
Length = 629
Score = 298 bits (762), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 229/376 (60%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L FGY FR Q+++I ++ +DCLV+MATG+GKSLCYQ+P L T LVVSP
Sbjct: 32 LHVLHSVFGYQSFRKGQQEIINAVLNGQDCLVIMATGTGKSLCYQIPALCFDGTTLVVSP 91
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ G+ A++L S QT VQ +A +G +LL+++PEK ++ SF
Sbjct: 92 LISLMKDQVDQLRANGVEADYLNSTQTFEEQQQVQNRAISGQLKLLYLSPEK--VMTSSF 149
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + V A+DEAHCIS+WGHDFR EY QL L+ VP +ALTATA + + D
Sbjct: 150 FQFISLCQVSFIAIDEAHCISQWGHDFRPEYTQLGGLKGSFPNVPIMALTATADQTTQQD 209
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ +L+L P+ + SFDR N+ Y ++ + + +++L + +L +G IVYC +
Sbjct: 210 ILQNLRLNRPHFYVGSFDRPNIRY--TLVEKFKP-MEQLCRFVLAQKGKSG--IVYCNSR 264
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I++ L GV+A YH M + RE+ R F RD I+V+VAT+AFGMGI+K +VR
Sbjct: 265 NKVERIAETLYNKGVRAAAYHAGMENGLREKVQRDFQRDNIQVVVATIAFGMGINKSNVR 324
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V H+ P+++ESYYQE+GR GRD + + L+Y +++ + E QR
Sbjct: 325 FVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYDPADYVWLNKMLMEKPETPQRQIEQH 384
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 385 KLQAIGEFAESQTCRR 400
>gi|298675436|ref|YP_003727186.1| ATP-dependent DNA helicase RecQ [Methanohalobium evestigatum
Z-7303]
gi|298288424|gb|ADI74390.1| ATP-dependent DNA helicase RecQ [Methanohalobium evestigatum
Z-7303]
Length = 596
Score = 297 bits (761), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 156/377 (41%), Positives = 230/377 (61%), Gaps = 10/377 (2%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M L KYFGY FR +QKD+I I++K+D VVM TG GKSLCYQLP L+ +VVS
Sbjct: 1 MYKILHKYFGYEEFRSHQKDIITDILDKKDTFVVMPTGGGKSLCYQLPALLMEGVTIVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV L+ GI+A L S Q + + +L++TPE+ +
Sbjct: 61 PLISLMKDQVDELRSNGISAACLNSTLGYQESNQICNDLLYNRIDVLYITPERLTMSKTL 120
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
+ L + LFA+DEAHCISEWG DFR EY +L+ L+ +P +ALTATAT +V+
Sbjct: 121 DF--LESVNINLFAIDEAHCISEWGQDFRPEYLRLNMLKKKFPDIPLIALTATATPRVQN 178
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
D+I+ L+L++ I+SF+R NL+Y V+ + ++V+ + G I+YC +
Sbjct: 179 DVISLLELEDCRRYISSFNRDNLYYEVR---HKKDAYKQMVRYLKTHRKYNG--IIYCQS 233
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
+ VE++ LK+ G + YH + +K REE FIRD+++++VAT+AFGMGI+KP+V
Sbjct: 234 RRAVEDLYNKLKKEGFRVLPYHAGLPAKIREENQESFIRDDVQIIVATIAFGMGINKPNV 293
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHY PK LE+YYQ++GR GRDG+ C L+++ + K +++ + +++R +
Sbjct: 294 RFVIHYDLPKNLENYYQQTGRGGRDGLDCDCILFFSYGDRYKIEYFINQKSRKSERDIAL 353
Query: 358 ESLLAAQRYCLLTTCRR 374
L YC CRR
Sbjct: 354 SKLNMMIDYCESNVCRR 370
>gi|423223965|ref|ZP_17210433.1| ATP-dependent DNA helicase RecQ [Bacteroides cellulosilyticus
CL02T12C19]
gi|392637198|gb|EIY31072.1| ATP-dependent DNA helicase RecQ [Bacteroides cellulosilyticus
CL02T12C19]
Length = 611
Score = 297 bits (761), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 161/378 (42%), Positives = 232/378 (61%), Gaps = 13/378 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ TLK+YFGY FRP Q+++I+ ++ RD LV+M TG GKS+CYQLP L+ TA+VVS
Sbjct: 10 MIQTLKRYFGYDSFRPLQEEIIRTLLAGRDSLVLMPTGGGKSICYQLPALLCEGTAVVVS 69
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV SL G+ A L S+ ++ +++ G +LL+++PEK I+
Sbjct: 70 PLISLMKDQVESLCANGVAAGALNSSNDETENAALRRSCMEGKLKLLYISPEKL----IA 125
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
+ LL+ + LFA+DEAHCIS+WGHDFR EY Q+ + +P +ALTATA + R
Sbjct: 126 EANYLLRDMHISLFAIDEAHCISQWGHDFRPEYAQMGFIHEMFPNIPVIALTATADKITR 185
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DI+ L L P V I+SFDR NL VK + + ++ I + +G I+YCM
Sbjct: 186 EDIVRQLHLNQPKVFISSFDRPNLSLTVKRGYQQKEKSKAILDFIGRHRGESG--IIYCM 243
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ E +++ L++ G +A YH + S R+EA FI D ++++ AT+AFGMGIDK +
Sbjct: 244 SRSKTETVAQMLQKQGFRAAVYHAGLSSARRDEAQDDFINDRVQIVCATIAFGMGIDKSN 303
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY PK++ES+YQE GR GRDG+ S L+Y+ ++ + ES Q+
Sbjct: 304 VRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTLLFYSLADLILLTKFATES---GQQGIN 360
Query: 357 MESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 361 LEKLQRMQQYAEADVCRR 378
>gi|392963657|ref|ZP_10329081.1| ATP-dependent DNA helicase RecQ [Fibrisoma limi BUZ 3]
gi|387847620|emb|CCH51120.1| ATP-dependent DNA helicase RecQ [Fibrisoma limi BUZ 3]
Length = 715
Score = 297 bits (761), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 159/373 (42%), Positives = 231/373 (61%), Gaps = 11/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK+Y+GY FRP Q+D+++ I+ RD LV+M TG GKS+C+Q+P L+ +VVSPLI+
Sbjct: 21 LKRYYGYDRFRPMQEDIVRSILRGRDTLVLMPTGGGKSVCFQIPALMMPGICVVVSPLIA 80
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L GI A F S Q+ +++ G +LL+++PEK ++ SF+
Sbjct: 81 LMKDQVEALHMNGIPAAFYNSTQSGKEQRAIEDDCVKGKIKLLYVSPEK--MLTESFFVF 138
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + LFA+DEAHCIS WGHDFR EY QL L+ VP VALTATA + R DI
Sbjct: 139 LKRINISLFAIDEAHCISSWGHDFRPEYTQLHVLKEHFPTVPTVALTATADKLTRNDIAQ 198
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L + +P V IASF+R NL +KV+ G + + ++++ + + +G I+YC++ K
Sbjct: 199 RLGMNDPAVFIASFNRPNL--SLKVLP-GTNRLPQIIKLLQQKPDTSG--IIYCLSRKST 253
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E ++ L++ G KA YH +M + R + F+RD++R+M AT+AFGMGIDK +VR VI
Sbjct: 254 ESLAAKLQEKGFKAAFYHAKMDPEDRAKTQEAFLRDDVRIMCATIAFGMGIDKSNVRWVI 313
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
HY PK +ES+YQE GR GRDG + L+Y+ ++ A ES N + + L
Sbjct: 314 HYNLPKNIESFYQEIGRAGRDGAEAQTVLFYSFADVATYKDMLSESAPANLGLQLAK-LE 372
Query: 362 AAQRYCLLTTCRR 374
Q+Y TCRR
Sbjct: 373 RMQQYADANTCRR 385
>gi|406933324|gb|EKD68008.1| hypothetical protein ACD_48C00110G0001, partial [uncultured
bacterium]
Length = 334
Score = 297 bits (761), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 159/337 (47%), Positives = 209/337 (62%), Gaps = 18/337 (5%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
+LK FG+ FRP Q++++Q +IEK+D LV+M TG GKSLCYQLP V +VVSPLI
Sbjct: 9 SLKHTFGFDSFRPMQEEIVQAVIEKKDVLVLMPTGGGKSLCYQLPATVQDGLTVVVSPLI 68
Query: 64 SLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
+LM+DQV L GI A FL S+ ++ + E G +L+++PEK +I +F
Sbjct: 69 ALMKDQVEGLVANGIKAAFLNSSLELDEHQDIREQLERGDIDILYVSPEK--LITPNFQY 126
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L K V LFA+DEAHCIS+WGHDFR Y QL L+ +P +ALTATA + R DI+
Sbjct: 127 SLKKWNVQLFAIDEAHCISQWGHDFRPGYTQLRTLKESFPDIPIIALTATADKTTRKDIL 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGV----KVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
LKLK+P V I+SFDR NL V K I R +FV + E S I+YC+
Sbjct: 187 AQLKLKDPKVFISSFDRPNLALNVLPAKKRIERIITFVKKRKHE---------SGIIYCL 237
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ E+++ AL Q G+ AG YH M S R +A FI ++VAT+AFGMGIDK +
Sbjct: 238 SRNQTEKVATALIQEGINAGYYHAGMQSHERAKAQDDFIHGRTNIVVATVAFGMGIDKSN 297
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYA 333
VR+VIH+ PK LE YYQE GR GRDG+ S L+Y+
Sbjct: 298 VRYVIHHNLPKNLEGYYQEIGRAGRDGLPSETLLFYS 334
>gi|296121484|ref|YP_003629262.1| ATP-dependent DNA helicase RecQ [Planctomyces limnophilus DSM 3776]
gi|296013824|gb|ADG67063.1| ATP-dependent DNA helicase RecQ [Planctomyces limnophilus DSM 3776]
Length = 779
Score = 297 bits (761), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 160/372 (43%), Positives = 227/372 (61%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ +GY FRP Q+ VIQ ++ R+ +VV+ TG GKSLCYQ+P L+ A+VVSPLIS
Sbjct: 57 LQRLWGYEDFRPLQEQVIQALLAGRESVVVLPTGGGKSLCYQVPALLKPGLAIVVSPLIS 116
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKA---ETGYFQLLFMTPEKACIIPISFWSK 121
LM DQV SL++ G+ A + S ++ Q A +G +LL+++PE+ ++
Sbjct: 117 LMFDQVSSLQEVGVAAAAIHSGLSNQERQQIAGQIRSGELRLLYLSPER--LMTDRMLGF 174
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + + A+DEAHCIS+WGHDFR EY+ L L+ +P A TATAT++VR DI
Sbjct: 175 LEQVPLSMLAIDEAHCISDWGHDFRPEYRMLSGLKDRFPQLPIHAFTATATQEVRQDIAR 234
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L NP + SFDR NL Y +VI R D+ V ++ G S +VYC+ KDV
Sbjct: 235 QLGLANPQFHVGSFDRPNLIY--RVIPREDR--DQQVISTIRRHPGE-SGVVYCLRRKDV 289
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
++++ LKQ G +A YH + + R F+ D + ++VAT+AFGMGIDK DVR VI
Sbjct: 290 DDVTTMLKQAGFRALPYHAGLPDEERHANQHAFLNDHVEIIVATVAFGMGIDKSDVRFVI 349
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H G PK+LE+Y QESGR GRDG+ + CWL+YA+ +FA + Q+TA + L
Sbjct: 350 HTGAPKSLEAYQQESGRAGRDGLDAECWLFYAQGDFALWRSLQANLPEKAQQTA-QQVLA 408
Query: 362 AAQRYCLLTTCR 373
+ +C T CR
Sbjct: 409 GMEGFCQSTKCR 420
>gi|197287158|ref|YP_002153030.1| ATP-dependent DNA helicase RecQ [Proteus mirabilis HI4320]
gi|227357149|ref|ZP_03841518.1| ATP-dependent DNA helicase [Proteus mirabilis ATCC 29906]
gi|425070259|ref|ZP_18473373.1| ATP-dependent DNA helicase recQ [Proteus mirabilis WGLW6]
gi|425074080|ref|ZP_18477185.1| ATP-dependent DNA helicase recQ [Proteus mirabilis WGLW4]
gi|194684645|emb|CAR46565.1| ATP-dependent DNA helicase [Proteus mirabilis HI4320]
gi|227162681|gb|EEI47648.1| ATP-dependent DNA helicase [Proteus mirabilis ATCC 29906]
gi|404594320|gb|EKA94907.1| ATP-dependent DNA helicase recQ [Proteus mirabilis WGLW4]
gi|404595525|gb|EKA96065.1| ATP-dependent DNA helicase recQ [Proteus mirabilis WGLW6]
Length = 609
Score = 297 bits (761), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 164/374 (43%), Positives = 228/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I II RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LRETFGYQQFRPGQQEIIDTIITGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L GI+A FL S Q+ VQ + + G +LL++ PE+ ++ SF
Sbjct: 77 LMKDQVDQLCLHGIDAAFLNSTQSRDEQLQVQMRCQRGEIKLLYIAPER--LMMESFLHH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L++ L AVDEAHCIS+WGHDFR EY+ + LR +L VP +ALTATA R DIIN
Sbjct: 135 LVQWQPALLAVDEAHCISQWGHDFRPEYRGIGLLRQYLPDVPIIALTATADNTTRHDIIN 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L+ P V I+SFDR N+ Y + +D+L I +G I+YC + V
Sbjct: 195 QLALRTPLVHISSFDRPNIRY---TLVEKYKPLDQLWLFIRGQKGKSG--IIYCNSRSKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
EE ++ L + G+ YH M R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EETAERLGKRGLSIAAYHAGMDIATRAKVQDAFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C + + E+++ AI L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAQAVLFYDPADMAWLR-RCLDEKPESEQKAIESHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|423298844|ref|ZP_17276869.1| ATP-dependent DNA helicase RecQ [Bacteroides finegoldii CL09T03C10]
gi|408474193|gb|EKJ92712.1| ATP-dependent DNA helicase RecQ [Bacteroides finegoldii CL09T03C10]
Length = 601
Score = 297 bits (761), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 163/378 (43%), Positives = 231/378 (61%), Gaps = 13/378 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M TLK YFGY FRP Q+++I+ I+ K+D LV+M TG GKS+CYQLP L++ TA+VVS
Sbjct: 1 MRETLKTYFGYDSFRPLQEEIIRHILNKQDALVLMPTGGGKSICYQLPALLSEGTAIVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV L+ GI A L S+ ++ +++ G +LL+++PEK ++
Sbjct: 61 PLISLMKDQVEGLQANGIAAGALNSSNDETENANLRRSCVAGKLKLLYISPEKL----LA 116
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
LL+ + LFA+DEAHCIS+WGHDFR EY Q+ L VP +ALTATA + R
Sbjct: 117 EKDYLLRDMNISLFAIDEAHCISQWGHDFRPEYTQMGVLHQQFPQVPIIALTATADKITR 176
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DII L L P I+SFDR N+ VK + + +++ I + G S I+YCM
Sbjct: 177 EDIIRQLHLIRPRTFISSFDRPNISLTVKRGFQAKEKNKAIIEFIQRH--GKESGIIYCM 234
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ E +++ L + G++ G YH + ++ R+E FI D I+V+ AT+AFGMGIDK +
Sbjct: 235 SRSKTETVAQMLLKQGIRCGVYHAGLSAQQRDETQDDFINDRIQVVCATIAFGMGIDKSN 294
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY PK++ES+YQE GR GRDG+ S L+Y+ + + ES +Q+
Sbjct: 295 VRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTVLFYSLGDLILLTKFASES---SQQKIN 351
Query: 357 MESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 352 LEKLQRMQQYAEADICRR 369
>gi|387120628|ref|YP_006286511.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|429733941|ref|ZP_19267991.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans Y4]
gi|385875120|gb|AFI86679.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|429153932|gb|EKX96695.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans Y4]
Length = 629
Score = 297 bits (761), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 229/376 (60%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L FGY FR Q+++I ++ +DCLV+MATG+GKSLCYQ+P L T LVVSP
Sbjct: 32 LHVLHSVFGYQSFRKGQQEIINAVLNGQDCLVIMATGTGKSLCYQIPALCFDGTTLVVSP 91
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ G+ A++L S QT VQ +A +G +LL+++PEK ++ SF
Sbjct: 92 LISLMKDQVDQLRANGVAADYLNSTQTFEEQQQVQNRAISGQLKLLYLSPEK--VMTSSF 149
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + V A+DEAHCIS+WGHDFR EY QL L+ VP +ALTATA + + D
Sbjct: 150 FQFISLCQVSFIAIDEAHCISQWGHDFRPEYTQLGGLKGSFPNVPIMALTATADQTTQQD 209
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ +L+L P+ + SFDR N+ Y ++ + + +++L + +L +G IVYC +
Sbjct: 210 ILQNLRLNRPHFYVGSFDRPNIRY--TLVEKFKP-MEQLCRFVLAQKGKSG--IVYCNSR 264
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I++ L GV+A YH M + RE+ R F RD I+V+VAT+AFGMGI+K +VR
Sbjct: 265 NKVERIAETLYNKGVRAAAYHAGMENGLREKVQRDFQRDNIQVVVATIAFGMGINKSNVR 324
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V H+ P+++ESYYQE+GR GRD + + L+Y +++ + E QR
Sbjct: 325 FVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYDPADYVWLNKMLMEKPETPQRQIEQH 384
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 385 KLQAIGEFAESQTCRR 400
>gi|392396238|ref|YP_006432839.1| ATP-dependent DNA helicase RecQ [Flexibacter litoralis DSM 6794]
gi|390527316|gb|AFM03046.1| ATP-dependent DNA helicase RecQ [Flexibacter litoralis DSM 6794]
Length = 725
Score = 297 bits (760), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 157/373 (42%), Positives = 226/373 (60%), Gaps = 13/373 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++YFGYS FRP Q+D+I + K D LV+M TG GKS+C+Q+P + +V+SPLI+
Sbjct: 10 LQQYFGYSTFRPLQEDIISSVYAKNDTLVLMPTGGGKSICFQIPAITLDGICIVISPLIA 69
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L+ GI+A FL S+Q ++++ + G +LL+++PEK ++ SF
Sbjct: 70 LMKDQVNALQTNGISAAFLNSSQDMAEQREIESEVKQGKIKLLYVSPEK--LLTESFTYF 127
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + LFAVDEAHCIS+WGHDFR EY QL L+ VP +ALTATA + R DII+
Sbjct: 128 LQSLSISLFAVDEAHCISQWGHDFRPEYTQLKSLKDRFPFVPMIALTATADKITRRDIIS 187
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L+NP +ASF+R NL V + +D +V IL+ +G I+YC++ K+
Sbjct: 188 QLGLENPTEFVASFNRPNLSLNVLPAYKR---MDSIVSYILRRPNESG--IIYCLSRKNT 242
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E ++ L++ G+KA YH + + R FI D ++ AT+AFGMGIDKP+VR V+
Sbjct: 243 ENVAARLQKAGMKADYYHAGLNAHERSRVQDDFITDRTPIICATVAFGMGIDKPNVRWVM 302
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
HY PK +E YYQE GR GRDG+ L+Y+ F + G ++ Q+ + L
Sbjct: 303 HYNIPKNIEGYYQEIGRAGRDGLKGDTMLFYS---FNDLEVLKGFAEQSGQKELQLAKLD 359
Query: 362 AAQRYCLLTTCRR 374
Q+Y CRR
Sbjct: 360 RMQQYADAKICRR 372
>gi|348027736|ref|YP_004870422.1| ATP-dependent DNA helicase [Glaciecola nitratireducens FR1064]
gi|347945079|gb|AEP28429.1| ATP-dependent DNA helicase [Glaciecola nitratireducens FR1064]
Length = 627
Score = 297 bits (760), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 150/373 (40%), Positives = 225/373 (60%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK FGYS FRP Q +VI +++ +D L+++ TG GKSLCYQ+P LV +VVSPLIS
Sbjct: 39 LKDTFGYSEFRPGQMEVIDKVLNGQDTLILLPTGGGKSLCYQVPALVLEGITIVVSPLIS 98
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV L +G+NA +L S+Q Q E G LL++ PE+ ++ F +
Sbjct: 99 LMQDQVQQLTAQGVNAAYLNSSQDAEQSQKITEQLYNGELDLLYVAPER--LLQSYFLNS 156
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + V L AVDEAHC+S WGHDFR +Y+QL +L++ VPF+ALTATA ++DI +
Sbjct: 157 LQRVNVSLIAVDEAHCVSHWGHDFRQDYRQLGRLKSHFDNVPFIALTATADHATQVDIQH 216
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L+L NP+V FDR N+ Y + +G +++V + + AG IVYC + V
Sbjct: 217 QLQLDNPFVFKGGFDRPNIRYNLLAKYKG---FEQVVTFVKQQEGAAG--IVYCNSRAKV 271
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
+++++ L+ G+K YH + RE F++D+++V+VAT+AFGMGI+K +VR V+
Sbjct: 272 DDLTQRLQSAGIKCDAYHAGHDTATREFVQTQFLKDDLQVVVATVAFGMGINKSNVRFVV 331
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+++ESYYQE+GR GRDG+ + L + + A+ + ++ M
Sbjct: 332 HHDVPRSVESYYQETGRAGRDGMPAEALLLFDERDAARIKQWISTGTAADRYDIEMHKFE 391
Query: 362 AAQRYCLLTTCRR 374
A + + TCRR
Sbjct: 392 AMESFAEAQTCRR 404
>gi|119355903|ref|YP_910547.1| ATP-dependent DNA helicase RecQ [Chlorobium phaeobacteroides DSM
266]
gi|119353252|gb|ABL64123.1| ATP-dependent DNA helicase RecQ [Chlorobium phaeobacteroides DSM
266]
Length = 619
Score = 297 bits (760), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 156/377 (41%), Positives = 227/377 (60%), Gaps = 10/377 (2%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ TL+K FG+ FRP Q+ +++ IIEKRD VM TG GKSLCYQLP ++ T +V+S
Sbjct: 19 LYETLRKVFGFRDFRPNQEMIVRTIIEKRDVFAVMPTGGGKSLCYQLPAVLLPGTCMVIS 78
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPIS 117
PLI+LM+DQV + GI A FL S+ + + V + LL++ PE+ +
Sbjct: 79 PLIALMKDQVDGARANGIRAAFLNSSLAPEERTLVLRDLLSNSLDLLYVAPERFTLD--Q 136
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
F L + + + +DEAHCISEWGHDFR +Y L +L T +P A TATAT +V+
Sbjct: 137 FQEMLKRVNISMAVIDEAHCISEWGHDFRPDYLSLSQLVTLFPDLPVAAFTATATHQVQR 196
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI++ L L+NP+V ASFDR NL+Y ++ ++ D+LV + ++ AG I+Y +
Sbjct: 197 DILDKLALRNPFVVRASFDRANLYYDIRF---KENASDQLVALLKQNSGKAG--IIYRTS 251
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K V E + LK G + YH +G R++ FIRDE+ V+VAT+AFGMGIDK ++
Sbjct: 252 RKSVNETAALLKAKGFRVLPYHAGLGDDERKQNQEAFIRDEVDVIVATVAFGMGIDKSNI 311
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIH PK++E+YYQE+GR GRDG A+ C L +++S+ K F+ Q E +R +
Sbjct: 312 RFVIHADLPKSIENYYQETGRAGRDGEAARCTLLFSQSDIPKVRFFIDAMQDETERARAL 371
Query: 358 ESLLAAQRYCLLTTCRR 374
+ + + CRR
Sbjct: 372 GAFSKVISFASTSVCRR 388
>gi|94264239|ref|ZP_01288034.1| ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQ
[delta proteobacterium MLMS-1]
gi|93455350|gb|EAT05554.1| ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQ
[delta proteobacterium MLMS-1]
Length = 605
Score = 297 bits (760), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 158/374 (42%), Positives = 222/374 (59%), Gaps = 10/374 (2%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
TL+ FGY FRP Q+++++R++ D V+M TG GKSLCYQLP L A+VVSPLI
Sbjct: 7 TLRDVFGYDSFRPQQQEIVERLLGGGDAFVLMPTGGGKSLCYQLPALHRPGLAVVVSPLI 66
Query: 64 SLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV +L+ G+ A F SA V + G LL++ PE+ ++ F
Sbjct: 67 SLMKDQVDALRANGVRAAFYNSALGADEARRVLARMHDGQLDLLYVAPER--LLHSDFLG 124
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
+L + + LFA+DEAHCIS+WGHDFR EY +L LR GVP +ALTATA R DI+
Sbjct: 125 RLGQLKLALFAIDEAHCISQWGHDFRPEYTKLGLLRQNFPGVPLIALTATAEPHTRRDIL 184
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L++ + I SFDR N+ Y V+ ++ + F D+L+ + AG IVYC++ K
Sbjct: 185 ARLQIADEAAFITSFDRPNIRYTVR--DKKRPF-DQLLAFVGSRPREAG--IVYCLSRKR 239
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VEE++ L G A YH +G++ RE A F+RD+ ++VAT+AFGMGIDK ++R+V
Sbjct: 240 VEEVTARLNAAGFAARAYHAGLGAEEREAAQDAFLRDDTLIIVATVAFGMGIDKSNIRYV 299
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+HY PK +E YYQE+GR GRDG+ + L + + A SQ E +R L
Sbjct: 300 VHYDIPKNIEGYYQETGRAGRDGLPAEALLLFGFGDVAVARGLIDNSQNEERRRVESHKL 359
Query: 361 LAAQRYCLLTTCRR 374
A + + CRR
Sbjct: 360 NAMVGFAQASGCRR 373
>gi|193697793|ref|XP_001950864.1| PREDICTED: Werner syndrome ATP-dependent helicase homolog
[Acyrthosiphon pisum]
Length = 785
Score = 297 bits (760), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 157/345 (45%), Positives = 219/345 (63%), Gaps = 14/345 (4%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+S L+KYFG+S FR Q ++I ++E KRD VVM+TG GKSLCYQ P + + +VVS
Sbjct: 11 ISALRKYFGHSTFRSMQWEIIYSVLEQKRDACVVMSTGYGKSLCYQYPAVYSKGLTIVVS 70
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTD-SSVQTKAETGYFQLLFMTPEKACIIPISFW 119
PLISLM+DQV+SL+ I A LGSAQT + +G ++L++TPE I
Sbjct: 71 PLISLMKDQVLSLEMANIKACLLGSAQTSKADALNNLFSGEVRVLYITPE---WIATDSA 127
Query: 120 SKLL-----KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEK 174
K+L K + + A+DEAHC+S+WG DFR Y+ L KLR L VP +ALTATAT
Sbjct: 128 KKILQDLQTKIKIVVVAIDEAHCVSQWGFDFRSSYRNLGKLRNILPNVPIMALTATATPI 187
Query: 175 VRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVD--ELVQEILKSVAGAGSII 232
VR DI NSL L NP FDRKNL++ +V + FVD + +++ + G+ I
Sbjct: 188 VRKDICNSLNLINPKYVCTGFDRKNLYF--EVSKKTSIFVDLNKFMKKNGLKMFFEGATI 245
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
+YC T K E +++ LK ++ YH + R H F++D+++++VAT+AFGMGI
Sbjct: 246 IYCPTKKQTEAVAQELKSNRIECEVYHADIPLNKRNTVHENFVKDKLQIVVATVAFGMGI 305
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNF 337
DKPDVR VIHYG PK +ESYYQE GR GRDG+ ++C ++Y +++
Sbjct: 306 DKPDVRRVIHYGAPKDIESYYQEVGRAGRDGLPAMCHIFYNQADI 350
>gi|404494034|ref|YP_006718140.1| ATP-dependent DNA helicase RecQ [Pelobacter carbinolicus DSM 2380]
gi|77546057|gb|ABA89619.1| ATP-dependent DNA helicase RecQ [Pelobacter carbinolicus DSM 2380]
Length = 596
Score = 297 bits (760), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 157/378 (41%), Positives = 225/378 (59%), Gaps = 14/378 (3%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ LK+ FG+ FRP Q++++ RI++ +D V+M TG GKSLC+QLP L+ +VVSP
Sbjct: 6 LDILKRVFGFQSFRPLQEEIVARILDGQDAFVLMPTGGGKSLCFQLPALLRQGVGIVVSP 65
Query: 62 LISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV +L+ G+ A + S+ + V + G LL++ PE+ ++ F
Sbjct: 66 LISLMKDQVDALRASGVRAAYYNSSLGQKAARQVLAELHAGQLDLLYIAPER--LMSPGF 123
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+L V L A+DEAHCIS+WGHDFR EY QL LR GVP VALTATA + R D
Sbjct: 124 LERLRDMDVALIAIDEAHCISQWGHDFRPEYTQLGVLRRSFPGVPLVALTATADVQTRQD 183
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSI--IVYCM 236
I++ L+L + + SFDR N+ Y V+ + Q ++++K +AG GS IVY +
Sbjct: 184 ILSRLELDDDDCFVTSFDRPNIRY--TVLEKHQP-----ARQLMKFLAGHGSEAGIVYAL 236
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K VEE++K L G+ A YH +G R+ F+RDE++++VAT+AFGMGIDK +
Sbjct: 237 SRKRVEEVAKKLCDAGLSAAAYHAGLGDGERQRVQDEFLRDELQIVVATVAFGMGIDKSN 296
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR V+HY PK +E YYQE+GR GRDG+A+ L + + A + E Q
Sbjct: 297 VRFVVHYDLPKNIEGYYQETGRAGRDGLAAEALLLFGYGDIALCRGLIEKGHNEEQNRIE 356
Query: 357 MESLLAAQRYCLLTTCRR 374
+ L A + TCRR
Sbjct: 357 LHKLNAMASFAEALTCRR 374
>gi|329955315|ref|ZP_08296223.1| ATP-dependent DNA helicase RecQ [Bacteroides clarus YIT 12056]
gi|328525718|gb|EGF52742.1| ATP-dependent DNA helicase RecQ [Bacteroides clarus YIT 12056]
Length = 604
Score = 296 bits (759), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 164/378 (43%), Positives = 234/378 (61%), Gaps = 13/378 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ TLK YFGY FRP Q+++I+ I++ D LV+M TG GKS+CYQLP L+ TA+VVS
Sbjct: 1 MLQTLKTYFGYDSFRPLQEEIIRHILDGNDALVLMPTGGGKSICYQLPALLREGTAVVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSA--QTDSSVQTKAET-GYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L GI+A L S+ +T+++ +A T G +LL+++PEK ++
Sbjct: 61 PLISLMKDQVEALCANGISAGALNSSNDETENAALRRACTEGKLKLLYISPEKL----LA 116
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
+ LL+ + LFA+DEAHCIS+WGHDFR EY Q+ L VP +ALTATA + R
Sbjct: 117 EANYLLRDMHISLFAIDEAHCISQWGHDFRPEYTQMGILHRQFPQVPIIALTATADKITR 176
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DII L L +P + I+SFDR NL VK R + ++ I + +G I+YCM
Sbjct: 177 EDIIRQLHLNHPRIFISSFDRPNLSLTVKRGYRQKEKSKTILDFIARHPGESG--IIYCM 234
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ E +++ L++ G++ YH + R+EA FI D ++V+ AT+AFGMGIDK +
Sbjct: 235 SRSKTESVAQMLQKQGIRTAVYHAGLSPARRDEAQDDFINDRVQVVCATIAFGMGIDKSN 294
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY PK++ES+YQE GR GRDG+ S L+Y+ ++ + +S Q
Sbjct: 295 VRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTLLFYSLADLILLTKFATDS---GQEGIN 351
Query: 357 MESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 352 LEKLQRMQQYAESDICRR 369
>gi|255073857|ref|XP_002500603.1| predicted protein [Micromonas sp. RCC299]
gi|226515866|gb|ACO61861.1| predicted protein, partial [Micromonas sp. RCC299]
Length = 390
Score = 296 bits (759), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 171/387 (44%), Positives = 237/387 (61%), Gaps = 24/387 (6%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L KY+G++ FRP Q +V+ ++ RD V +TGSGKSLCYQLP L TGKT+LVVSPLIS
Sbjct: 1 LSKYYGHADFRPGQLEVVAATVQGRDSCVYWSTGSGKSLCYQLPALHTGKTSLVVSPLIS 60
Query: 65 LMQDQVMSLKQ-----RGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
LM DQV + G A FLGS+QTD SV+ +A G F+++++TPEK + I
Sbjct: 61 LMNDQVTHMNNTAGADEGDLAAFLGSSQTDKSVEERALRGDFRVVYVTPEK-LVGDIDDM 119
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLG---VPFVALTATATEKVR 176
++ K G L AVDEAHC+S+WGHDFR Y+ L +RT L VP +ALTATA EKVR
Sbjct: 120 ARDGKLG--LVAVDEAHCLSQWGHDFRKSYRGLTLIRTQLSPNGEVPVMALTATAVEKVR 177
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DI + L LK P+V S DR NL ++++ + + + + GS++VYC+
Sbjct: 178 EDIKDVLALKRPHVARNSCDRTNLRI---LVSKKRGGAADHLHIYERCRDAKGSVVVYCV 234
Query: 237 TIKDVEEISKALKQ----LGVKAGT--YHGQMGSKAREEAHRLFIRDEIRVMVATMAFGM 290
T +D E+I+ LK + AG YH + R+ H+ F+ ++V+VAT+AFGM
Sbjct: 235 TKRDAEDIATVLKNKFATQNIAAGVEVYHAGLAMSRRDATHKGFLTGSVKVVVATVAFGM 294
Query: 291 GIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAK--GDFYCGESQ 348
GIDKPD+R V+HYG PKT+E YYQ+ GR GRDG+ S + Y +F++ +FY G+
Sbjct: 295 GIDKPDIRLVMHYGAPKTMEEYYQQVGRAGRDGLPSDVEMIYGDGDFSRYSDEFYVGKLD 354
Query: 349 TENQRTAIMESLLAAQRYCL-LTTCRR 374
++T ES A +R+ CRR
Sbjct: 355 AAARKTQ-KESTDALERFSRSREVCRR 380
>gi|373849778|ref|ZP_09592579.1| ATP-dependent DNA helicase RecQ [Opitutaceae bacterium TAV5]
gi|372475943|gb|EHP35952.1| ATP-dependent DNA helicase RecQ [Opitutaceae bacterium TAV5]
Length = 620
Score = 296 bits (759), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 153/378 (40%), Positives = 231/378 (61%), Gaps = 12/378 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+++TL FGYS FRP Q+++I+ + RD ++ TG GKS+C+QLP L +VVS
Sbjct: 4 LLNTLHTTFGYSGFRPLQREIIEASLAGRDVFALLPTGGGKSMCFQLPALHRTGLTVVVS 63
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKA---ETGYFQLLFMTPEKACIIPIS 117
PLI+LM+DQV L+ G+ A +L S+ T +++ ++LL++ PE+ + +
Sbjct: 64 PLIALMKDQVDQLQAAGVAATYLNSSLTSGEARSRLAGLHRSEWRLLYVAPER---LMLD 120
Query: 118 FWSKLLKA-GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
W + L+A V A+DEAHCISEWGHDFR EY+Q+ +LR FL VP +ALTATAT +VR
Sbjct: 121 NWQENLRAWNVAALAIDEAHCISEWGHDFRPEYRQIARLREFLPEVPVMALTATATGRVR 180
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DI+ L+L+ P V +ASF+R NL Y +V+ + Q + +++ + K +G I+YC
Sbjct: 181 EDIVKHLQLREPAVYVASFNRPNLSY--RVLPKDQP-LKQIIDFVKKREDESG--IIYCA 235
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
T E+ +++L G A YH + + R LF+RD+++++ AT+AFGMGI+KP+
Sbjct: 236 TRATAEKTAESLASRGYAARPYHAGLSADDRSANQELFLRDDVKIICATIAFGMGINKPN 295
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIH+ PK +E YYQE+GR GRDG+ + C L Y+ + K + E +++
Sbjct: 296 VRWVIHHDLPKNIEGYYQETGRAGRDGLPADCLLLYSAGDIVKQTHFIDEITDAHEQQVA 355
Query: 357 MESLLAAQRYCLLTTCRR 374
L Y TTCRR
Sbjct: 356 RRQLRLMSHYAEDTTCRR 373
>gi|258647524|ref|ZP_05734993.1| ATP-dependent DNA helicase RecQ [Prevotella tannerae ATCC 51259]
gi|260852300|gb|EEX72169.1| ATP-dependent DNA helicase RecQ [Prevotella tannerae ATCC 51259]
Length = 607
Score = 296 bits (759), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 172/377 (45%), Positives = 226/377 (59%), Gaps = 17/377 (4%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
LKKYFGYS FRP Q+D++ + D LV+M TG GKS+C+QLP L+ LVVSPLI
Sbjct: 7 ALKKYFGYSDFRPLQEDIVATTLAGIDSLVLMPTGGGKSICFQLPALLLPGVTLVVSPLI 66
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQT-DSSVQTKAE--TGYFQLLFMTPEKACIIPISFWS 120
SLMQDQV +L++ GI A L S QT D ++ + G +LL+M PE
Sbjct: 67 SLMQDQVENLREAGIPACALNSNQTADEQLRLRRACLDGRVKLLYMAPETV----FKELD 122
Query: 121 KLLKA-GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+LL A + L A+DEAHC+S+WGHDFR EY QL LR PF+ALTATA E R DI
Sbjct: 123 QLLAALPISLVAIDEAHCVSQWGHDFRPEYVQLGTLRKAFGSAPFMALTATADEVTRQDI 182
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDEL--VQEILKSVAGAGSIIVYCMT 237
L L +P V I+SFDR NL V RG + ++L + L AG S IVYC++
Sbjct: 183 RERLNLHSPRVFISSFDRPNLSLNV---FRGLNGAEKLKAINRFLGMRAGE-SGIVYCLS 238
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K E++++ L+ LGV A YH + + R E + FI D++RV+VAT+AFGMGIDK +V
Sbjct: 239 RKTTEQLAEKLEALGVSARPYHAGLSADKRRETQQAFIADQLRVVVATIAFGMGIDKSNV 298
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHY PK++ESYYQE GR GRDG + L+Y ++ + + + ES R +
Sbjct: 299 RWVIHYNLPKSIESYYQEIGRAGRDGDPADTLLFYNYADIVQLEKFARESHL---REINL 355
Query: 358 ESLLAAQRYCLLTTCRR 374
E L + Y CRR
Sbjct: 356 ERLDRMREYAESNVCRR 372
>gi|113461847|ref|YP_719916.1| ATP-dependent DNA helicase RecQ [Haemophilus somnus 129PT]
gi|112823890|gb|ABI25979.1| ATP-dependent DNA helicase RecQ [Haemophilus somnus 129PT]
Length = 624
Score = 296 bits (759), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 160/376 (42%), Positives = 227/376 (60%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L FGY FR Q +VI+ + K+D LV+MATG GKSLCYQ+P L LV+SP
Sbjct: 26 LDILHSVFGYQSFRKGQLEVIEATLAKKDSLVIMATGGGKSLCYQIPALCFSGLTLVISP 85
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L GINA++L S+QT VQ KA +G +LL+++PEKA + SF
Sbjct: 86 LISLMKDQVDQLLANGINADYLNSSQTFEQQQLVQNKAMSGKLKLLYISPEKA--LTTSF 143
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + V AVDE HCIS+WGHDFR EY QL L+ P +ALTATA + R D
Sbjct: 144 FHFISHCKVSFIAVDETHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATADQATRQD 203
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ LKL NP++ I SFDR N+ Y + + + + +++L Q I K +G I+YC +
Sbjct: 204 ILIHLKLSNPHIYIGSFDRPNIRYSL--VEKFKP-MEQLSQFIAKQKGKSG--IIYCNSR 258
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I+++L+Q G+ A YH M ++ RE R F D ++++VAT+AFGMGI+K +VR
Sbjct: 259 NKVERIAESLRQKGISAEAYHAGMSNEQREFVQRAFQHDNVQIVVATIAFGMGINKSNVR 318
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V H+ P+++E+YYQE+GR GRD + + L+Y +++A E QR +
Sbjct: 319 FVAHFDLPRSIEAYYQETGRAGRDDLPAEAVLFYEPADYAWLQKVLLEKPDIPQRQIELH 378
Query: 359 SLLAAQRYCLLTTCRR 374
L + + CRR
Sbjct: 379 KLQSIGEFAESQICRR 394
>gi|416062304|ref|ZP_11581397.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|416069431|ref|ZP_11583273.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|347997266|gb|EGY38280.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|348000045|gb|EGY40845.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
Length = 629
Score = 296 bits (759), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 229/376 (60%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L FGY FR Q+++I ++ +DCLV+MATG+GKSLCYQ+P L T LVVSP
Sbjct: 32 LHVLHSVFGYQSFRKGQQEIINAVLNGQDCLVIMATGTGKSLCYQIPALCFDGTTLVVSP 91
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ G+ A++L S QT VQ +A +G +LL+++PEK ++ SF
Sbjct: 92 LISLMKDQVDQLRANGVAADYLNSTQTFEEQQQVQNRAISGQLKLLYLSPEK--VMTSSF 149
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + V A+DEAHCIS+WGHDFR EY QL L+ VP +ALTATA + + D
Sbjct: 150 FQFISLCQVSFIAIDEAHCISQWGHDFRPEYTQLGGLKGSFPNVPIMALTATADQTTQQD 209
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ +L+L P+ + SFDR N+ Y ++ + + +++L + +L +G IVYC +
Sbjct: 210 ILQNLRLNRPHFYVGSFDRPNIRY--TLVEKFKP-MEQLCRFVLAQKGKSG--IVYCNSR 264
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I++ L GV+A YH M + RE+ R F RD I+V+VAT+AFGMGI+K +VR
Sbjct: 265 NKVERIAETLCNKGVRAAAYHAGMENGLREKVQRDFQRDNIQVVVATIAFGMGINKSNVR 324
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V H+ P+++ESYYQE+GR GRD + + L+Y +++ + E QR
Sbjct: 325 FVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYDPADYVWLNKMLMEKPETPQRQIEQH 384
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 385 KLQAIGEFAESQTCRR 400
>gi|404497566|ref|YP_006721672.1| ATP-dependent DNA helicase RecQ [Geobacter metallireducens GS-15]
gi|418065091|ref|ZP_12702466.1| ATP-dependent DNA helicase RecQ [Geobacter metallireducens RCH3]
gi|78195168|gb|ABB32935.1| ATP-dependent DNA helicase RecQ [Geobacter metallireducens GS-15]
gi|373562723|gb|EHP88930.1| ATP-dependent DNA helicase RecQ [Geobacter metallireducens RCH3]
Length = 601
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 154/376 (40%), Positives = 222/376 (59%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ TL+ FGY FRP+Q++++ R+I D V+M TG GKSLCYQ+P + +VVSP
Sbjct: 7 LDTLRTVFGYRTFRPFQEEIVTRLIGGGDAFVLMPTGGGKSLCYQIPAIHRPGVGIVVSP 66
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV +L++ G+ A SA + V + G LL++ PE+ ++ +F
Sbjct: 67 LISLMKDQVDTLRENGVAAAAYNSAMGEREARQVLARLHAGELDLLYVAPER--LMTDAF 124
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+L + V LFA+DEAHC+S+WGHDFR EY L +LR GVP +ALTATA + R D
Sbjct: 125 LERLREIPVALFAIDEAHCVSQWGHDFRPEYVGLGRLRGLFPGVPVIALTATADVQTRSD 184
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
II+ L L++ V + FDR N+ Y V+++ + F +L+ + AG IVY ++
Sbjct: 185 IIDRLGLRDAQVYVTGFDRPNIRY--TVVDKQKPF-HQLLAFLGNRPQDAG--IVYALSR 239
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K VEE++ L+ G++A YH + R F+RD++RV+VAT+AFGMGIDKP+VR
Sbjct: 240 KRVEEVAGKLRDAGIEAAAYHAGLADGERGRVQEAFLRDDVRVVVATVAFGMGIDKPNVR 299
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+HY PK +ESYYQE+GR GRDG+ + L + + A Q +
Sbjct: 300 FVVHYDLPKNIESYYQETGRAGRDGLPAEALLLFGYGDIAVSRSLIESGNNPEQVRIELH 359
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 360 KLNAMVGFAEAGTCRR 375
>gi|418465350|ref|ZP_13036287.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans RhAA1]
gi|359756282|gb|EHK90441.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans RhAA1]
Length = 629
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 158/373 (42%), Positives = 228/373 (61%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L FGY FR Q+++I ++ +DCLV+MATG+GKSLCYQ+P L T LVVSPLIS
Sbjct: 35 LHSVFGYQSFRKGQQEIINAVLNGQDCLVIMATGTGKSLCYQIPALCFDGTTLVVSPLIS 94
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A++L S QT VQ +A +G +LL+++PEK ++ SF+
Sbjct: 95 LMKDQVDQLRANGVAADYLNSTQTFEEQQQVQNRAISGQLKLLYLSPEK--VMTSSFFQF 152
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
+ V A+DEAHCIS+WGHDFR EY QL L+ VP +ALTATA + + DI+
Sbjct: 153 ISLCQVSFIAIDEAHCISQWGHDFRPEYTQLGGLKGSFPNVPIMALTATADQTTQQDILQ 212
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
+L+L P+ + SFDR N+ Y ++ + + +++L + +L +G IVYC + V
Sbjct: 213 NLRLNRPHFYVGSFDRPNIRY--TLVEKFKP-MEQLCRFVLAQKGKSG--IVYCNSRNKV 267
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E I++ L GV+A YH M + RE+ R F RD I+V+VAT+AFGMGI+K +VR V
Sbjct: 268 ERIAETLCNKGVRAAAYHAGMENGLREKVQRDFQRDNIQVVVATIAFGMGINKSNVRFVA 327
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+++ESYYQE+GR GRD + + L+Y +++ + E QR L
Sbjct: 328 HFDLPRSIESYYQETGRAGRDDLPAEAVLFYDPADYVWLNKMLMEKPETPQRQIEQHKLQ 387
Query: 362 AAQRYCLLTTCRR 374
A + TCRR
Sbjct: 388 AIGEFAESQTCRR 400
>gi|417001954|ref|ZP_11941427.1| ATP-dependent DNA helicase RecQ [Anaerococcus prevotii
ACS-065-V-Col13]
gi|325479664|gb|EGC82756.1| ATP-dependent DNA helicase RecQ [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 591
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 152/338 (44%), Positives = 219/338 (64%), Gaps = 14/338 (4%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ LKKYFGY FR Q+++I+ I+E R+ L V+ TG GKS+CYQLP L+T +LV+S
Sbjct: 6 LLEKLKKYFGYDSFRQGQRELIENILEGRNVLGVLPTGGGKSICYQLPALMTDGVSLVIS 65
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSS----VQTKAETGYFQLLFMTPEKACIIPI 116
PLISLM+DQV SL++ GINA F+ S+ DS + + +TG ++L+++PE+ +
Sbjct: 66 PLISLMKDQVDSLRENGINAGFINSS-LDSEEYRKILSDVKTGQIKILYISPER---LEN 121
Query: 117 SFWSKLLKA-GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
F+ ++ +C AVDEAHCIS+WGHDFR YK + L L V +A TATAT++V
Sbjct: 122 EFFRNFIRDIDICFVAVDEAHCISQWGHDFRPSYKLIPDLYQILGDVQILAFTATATKEV 181
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYC 235
R DIIN+L+L NP++ + FDRKNL++ V ++++ +++ + +G I+Y
Sbjct: 182 REDIINNLQLSNPFIKVTGFDRKNLYFKVAKPKNKLTYLNSYLKD-HRDESG----IIYA 236
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
T K V++I K LK G YH + R++A FI D +++VAT AFGMGIDK
Sbjct: 237 STRKKVDDIYKNLKSRGYAIEKYHAGLSEDERKKAQDNFIYDRAKIIVATNAFGMGIDKS 296
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYA 333
+VR VIHY PK +ESYYQE+GR GRDG + C L Y+
Sbjct: 297 NVRFVIHYNMPKDMESYYQEAGRAGRDGEDATCILLYS 334
>gi|419801388|ref|ZP_14326616.1| ATP-dependent DNA helicase RecQ [Haemophilus parainfluenzae HK262]
gi|419845355|ref|ZP_14368628.1| ATP-dependent DNA helicase RecQ [Haemophilus parainfluenzae HK2019]
gi|385193739|gb|EIF41095.1| ATP-dependent DNA helicase RecQ [Haemophilus parainfluenzae HK262]
gi|386415831|gb|EIJ30351.1| ATP-dependent DNA helicase RecQ [Haemophilus parainfluenzae HK2019]
Length = 618
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 162/378 (42%), Positives = 226/378 (59%), Gaps = 14/378 (3%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ TL+ FGY FR Q++VI + +D LVVMATG+GKSLCYQ+P L LV+SP
Sbjct: 16 LHTLRSVFGYQSFRKGQEEVIHAALSGQDALVVMATGNGKSLCYQIPALCFPGLTLVISP 75
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ GI A+FL S+QT V+ K +G +LL+++PEK ++ SF
Sbjct: 76 LISLMKDQVDQLQANGIEADFLNSSQTPEQQQQVENKLISGQLKLLYVSPEK--VMTNSF 133
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + A + A+DEAHCIS+WGHDFR EY QL L+ P +ALTATA R D
Sbjct: 134 FQLISYAQISFIAIDEAHCISQWGHDFRPEYTQLGGLKAAFPNAPIMALTATADYATRQD 193
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSF--VDELVQEILKSVAGAGSIIVYCM 236
I+ LKL NP+ I SFDR N+ Y ++ + F +++L + +L +G IVYC
Sbjct: 194 ILTHLKLDNPHKYIGSFDRPNIRYTLE-----EKFKPMEQLTRFVLAQKGKSG--IVYCN 246
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ VE I++ L+ GV A YH M + RE + F RD ++V+VAT+AFGMGI+K +
Sbjct: 247 SRSKVERIAEILRNKGVSAAAYHAGMETALRERVQQDFQRDNVQVVVATIAFGMGINKSN 306
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR V H+ P+++ESYYQE+GR GRD + + L+Y +++A E QR
Sbjct: 307 VRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLEKPETPQRQIE 366
Query: 357 MESLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 367 QHKLEAIGEFAESQTCRR 384
>gi|170078505|ref|YP_001735143.1| ATP-dependent DNA helicase [Synechococcus sp. PCC 7002]
gi|169886174|gb|ACA99887.1| ATP-dependent DNA helicase [Synechococcus sp. PCC 7002]
Length = 712
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 160/381 (41%), Positives = 224/381 (58%), Gaps = 13/381 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ + LK +FGY FR QK VI +E RD L +M TG+GKSLC+QLP L+ +V+S
Sbjct: 7 LEAALKHFFGYDNFRHGQKAVITAALENRDILALMPTGAGKSLCFQLPALLKPGLTVVIS 66
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPIS 117
PLI+LMQDQV +L GI A FL S +++ + G +LL++ PE+ +
Sbjct: 67 PLIALMQDQVDALTDNGIGATFLNSTLNLDQARSRIQAIFNGNIKLLYVAPER--LFNEG 124
Query: 118 FWSKLLKA----GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATE 173
F L G+ F VDEAHC+SEWGHDFR EY+QL ++R P A TATAT+
Sbjct: 125 FQQLLTDVDQTIGLTGFVVDEAHCVSEWGHDFRPEYRQLSRIRRRYPRTPCQAFTATATQ 184
Query: 174 KVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIV 233
+VR DII+ L L+NP SF+R NL+Y +V+ + + +L+ + + G I+
Sbjct: 185 RVREDIIDQLALQNPSFHCTSFNRPNLYY--EVLPKVRKSYTQLLCYVRQRRGQPG--II 240
Query: 234 YCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGID 293
YC + K V+E++ LKQ GVKA YH + + R + FIRD++ VMVAT+AFGMGI+
Sbjct: 241 YCSSRKKVDELADRLKQDGVKALPYHAGLADRLRADYQEQFIRDDVPVMVATVAFGMGIN 300
Query: 294 KPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQR 353
KPDVR V+HY P LE YYQESGR GRDG + C L+Y + + +++ + E ++
Sbjct: 301 KPDVRFVVHYDLPTNLERYYQESGRAGRDGEPAHCTLFYRAGDIKRAEYFIELKEDEQEK 360
Query: 354 TAIMESLLAAQRYCLLTTCRR 374
+ L Y CRR
Sbjct: 361 RIAYQQLQKMIDYAEGIDCRR 381
>gi|145632079|ref|ZP_01787814.1| ATP-dependent DNA helicase [Haemophilus influenzae 3655]
gi|145634861|ref|ZP_01790569.1| organic solvent tolerance protein [Haemophilus influenzae PittAA]
gi|144986986|gb|EDJ93516.1| ATP-dependent DNA helicase [Haemophilus influenzae 3655]
gi|145268027|gb|EDK08023.1| organic solvent tolerance protein [Haemophilus influenzae PittAA]
Length = 619
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 161/376 (42%), Positives = 224/376 (59%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+S LK FGY FR Q++VI + +D LVVMATG+GKSLCYQ+P L LV+SP
Sbjct: 17 LSVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISP 76
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ GI A+FL S+QT VQ K +G +LL+++PEK ++ SF
Sbjct: 77 LISLMKDQVDQLQANGIEADFLNSSQTLEQQQRVQNKLISGQLKLLYVSPEK--VMTNSF 134
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + + VC A+DEAHCIS+WGHDFR EY QL L+ P +ALTATA + D
Sbjct: 135 FQLISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATADYATQQD 194
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L LKN + I SFDR N+ Y + +++L + +L +G I+YC +
Sbjct: 195 ILRHLNLKNLHKYIGSFDRPNIRY---TLEEKYKPMEQLTRFVLAQKGKSG--IIYCNSR 249
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I+++L+ GV A YH M + RE + F RD ++V+VAT+AFGMGI+K +VR
Sbjct: 250 NKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFGMGINKSNVR 309
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V H+ P+++ESYYQE+GR GRD + + L+Y +++A E QR
Sbjct: 310 FVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLEKPETPQRQIEQH 369
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 370 KLEAIGEFAESQTCRR 385
>gi|218130244|ref|ZP_03459048.1| hypothetical protein BACEGG_01832 [Bacteroides eggerthii DSM 20697]
gi|217987528|gb|EEC53856.1| ATP-dependent DNA helicase RecQ [Bacteroides eggerthii DSM 20697]
Length = 604
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 165/378 (43%), Positives = 234/378 (61%), Gaps = 13/378 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M TLK YFGY FRP Q+++I+ I+ D LV+M TG GKS+CYQLP L+ TA+VVS
Sbjct: 1 MQQTLKTYFGYDSFRPLQEEIIRHILGGNDALVLMPTGGGKSICYQLPALLREGTAVVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSA--QTDSSVQTKA-ETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L GI+A L S+ +T+++ +A G +LL+++PEK ++
Sbjct: 61 PLISLMKDQVEALCANGISAGALNSSNDETENAALRRACMEGKLKLLYISPEKL----LA 116
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
+ LL+ V LFA+DEAHCIS+WGHDFR EY Q+ L VP +ALTATA + R
Sbjct: 117 EANYLLRDMHVSLFAIDEAHCISQWGHDFRPEYAQMGILHQQFPQVPVIALTATADKITR 176
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DII L L +P + I+SFDR NL VK + + ++ I + +G I+YCM
Sbjct: 177 EDIIKQLHLNHPRIFISSFDRPNLSLTVKRGYQQKEKSKAIIDFIARHPGESG--IIYCM 234
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ E +++ L++ G++A YH + R+EA FI D ++V+ AT+AFGMGIDK +
Sbjct: 235 SRSKTESVAQMLQKQGIRAAVYHAGLSPTRRDEAQDDFINDRVQVVCATIAFGMGIDKSN 294
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY PK++ES+YQE GR GRDG+ S L+Y+ S+ + +S Q++
Sbjct: 295 VRWVIHYNLPKSIESFYQEIGRAGRDGMPSDTLLFYSLSDLILLTKFATDS---GQQSIN 351
Query: 357 MESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 352 IEKLQRMQQYAESDICRR 369
>gi|118579582|ref|YP_900832.1| ATP-dependent DNA helicase RecQ [Pelobacter propionicus DSM 2379]
gi|118502292|gb|ABK98774.1| ATP-dependent DNA helicase RecQ [Pelobacter propionicus DSM 2379]
Length = 714
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 164/381 (43%), Positives = 221/381 (58%), Gaps = 24/381 (6%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
TLK FGY FRP Q++VIQR++ D +VM TG GKSLCYQ+P L A+VVSPLI
Sbjct: 8 TLKSVFGYGSFRPPQREVIQRVVAGEDVFLVMPTGGGKSLCYQIPALHREGVAIVVSPLI 67
Query: 64 SLMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A S A+ +V + G LL++ PE+ ++P F
Sbjct: 68 SLMKDQVDGLVDAGVRAACYNSSLTAEESRAVSRQLAQGELDLLYVAPER-LLLP-DFLE 125
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
+L + LFA+DEAHCIS+WGHDFR +Y +L +LR VP VA+TATA + R DII
Sbjct: 126 RLGGLKLALFAIDEAHCISQWGHDFRPDYVKLGRLRELFPSVPIVAMTATADPETRRDII 185
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAG--SIIVYCMTI 238
L ++ + +A FDR N+ Y V + V ++L + G G S IVY ++
Sbjct: 186 RQLGIERATLFVAGFDRPNITYAVIPKQKP-------VNQLLSFLKGRGDESGIVYALSR 238
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K VE++++ L+Q G A YH + + R F RD++RV+VAT+AFGMGIDKP+VR
Sbjct: 239 KRVEQVTERLQQAGFDAAAYHAGLPDRERSRVQDAFRRDDLRVVVATVAFGMGIDKPNVR 298
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTA--- 355
V+HY PK++ESYYQE+GR GRDG+ S + F GD S EN A
Sbjct: 299 FVVHYDLPKSVESYYQETGRAGRDGLPSQALML-----FGMGDVMTARSLIENSDNAERV 353
Query: 356 --IMESLLAAQRYCLLTTCRR 374
++ L A Y TCRR
Sbjct: 354 RIELQKLNAMVSYAEALTCRR 374
>gi|297570067|ref|YP_003691411.1| ATP-dependent DNA helicase RecQ [Desulfurivibrio alkaliphilus AHT2]
gi|296925982|gb|ADH86792.1| ATP-dependent DNA helicase RecQ [Desulfurivibrio alkaliphilus AHT2]
Length = 609
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 158/378 (41%), Positives = 222/378 (58%), Gaps = 18/378 (4%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
TLK FG++ FRP Q+++I+ ++ RD V+M TG GKSLCYQLP L A+VVSPLI
Sbjct: 8 TLKDVFGFASFRPQQREIIEDLLAGRDAFVLMPTGGGKSLCYQLPALHRPGVAIVVSPLI 67
Query: 64 SLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV +LK +GI A SA Q V + G LL++ PE+ ++ F
Sbjct: 68 SLMKDQVDALKAQGIKAACYNSALEAQEARQVLARLHGGELDLLYVAPER--LMSEDFLG 125
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
+L + + LFA+DEAHC+S+WGHDFR EY QL +LR G+P +ALTATA R DII
Sbjct: 126 RLRELQIALFAIDEAHCVSQWGHDFRPEYIQLGRLRQKFPGIPLIALTATAEPHTRKDII 185
Query: 181 NSLKLKNPYVTIASFDRKNLFYGV----KVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
L L+ + SFDR N+ Y V + N+ F+D +E AG I+YC+
Sbjct: 186 ARLNLEKARCYLTSFDRPNIRYTVLEKKRPFNQLLDFLDGRREE-------AG--IIYCL 236
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K VE+++ L++ G A +YH + + R F+RD++ ++VAT+AFGMGIDK +
Sbjct: 237 SRKRVEQLTAKLQEAGFAAASYHAGLSGEERSRVQEAFLRDDLPLIVATVAFGMGIDKSN 296
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
+R+V+H+ PK +E YYQE+GR GRDG+ S L + + A SQ E +R
Sbjct: 297 IRYVVHHDVPKNIEGYYQETGRAGRDGLNSEALLLFGMGDVALARGLIDNSQNEERRRIE 356
Query: 357 MESLLAAQRYCLLTTCRR 374
L A + T CRR
Sbjct: 357 NHKLAAMVGFAQATGCRR 374
>gi|317477615|ref|ZP_07936833.1| ATP-dependent DNA helicase RecQ [Bacteroides eggerthii 1_2_48FAA]
gi|316906220|gb|EFV27956.1| ATP-dependent DNA helicase RecQ [Bacteroides eggerthii 1_2_48FAA]
Length = 604
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 164/378 (43%), Positives = 234/378 (61%), Gaps = 13/378 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M TLK YFGY FRP Q+++I+ I+ D LV+M TG GKS+CYQLP L+ TA+VVS
Sbjct: 1 MQQTLKTYFGYDSFRPLQEEIIRHILGGNDALVLMPTGGGKSICYQLPALLREGTAVVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSA--QTDSSVQTKA-ETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L GI+A L S+ +T+++ +A G +LL+++PEK ++
Sbjct: 61 PLISLMKDQVEALCANGISAGALNSSNDETENAALRRACMEGKLKLLYISPEKL----LA 116
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
+ LL+ + LFA+DEAHCIS+WGHDFR EY Q+ L VP +ALTATA + R
Sbjct: 117 EANYLLRDMHISLFAIDEAHCISQWGHDFRPEYAQMGILHQQFPQVPIIALTATADKITR 176
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DII L L +P + I+SFDR NL VK + + ++ I + +G I+YCM
Sbjct: 177 EDIIKQLHLNHPRIFISSFDRPNLSLTVKRGYQQKEKSKAIIDFIARHPGESG--IIYCM 234
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ E +++ L++ G++A YH + R+EA FI D ++V+ AT+AFGMGIDK +
Sbjct: 235 SRSKTESVAQMLQKQGIRAAVYHAGLSPTRRDEAQDDFINDRVQVVCATIAFGMGIDKSN 294
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY PK++ES+YQE GR GRDG+ S L+Y+ S+ + +S Q++
Sbjct: 295 VRWVIHYNLPKSIESFYQEIGRAGRDGMPSDTLLFYSLSDLILLTKFATDS---GQQSIN 351
Query: 357 MESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 352 IEKLQRMQQYAESDICRR 369
>gi|415758430|ref|ZP_11481551.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|416048573|ref|ZP_11576347.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|347992536|gb|EGY33932.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|348655277|gb|EGY70749.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans D17P-3]
Length = 629
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 229/376 (60%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L FGY FR Q+++I ++ +DCLV+MATG+GKSLCYQ+P L T LVVSP
Sbjct: 32 LHVLHSVFGYQSFRKGQQEIINAVLNGQDCLVIMATGTGKSLCYQIPALCFDGTTLVVSP 91
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ G+ A++L S QT VQ +A +G +LL+++PEK ++ SF
Sbjct: 92 LISLMKDQVDQLRANGVAADYLNSTQTFEEQQQVQNRAISGQLKLLYLSPEK--VMTSSF 149
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + V A+DEAHCIS+WGHDFR EY QL L+ VP +ALTATA + + D
Sbjct: 150 FQFISLCQVSFIAIDEAHCISQWGHDFRPEYTQLGGLKGSFPKVPIMALTATADQTTQQD 209
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ +L+L P+ + SFDR N+ Y ++ + + +++L + +L +G IVYC +
Sbjct: 210 ILQNLRLNRPHFYVGSFDRPNIRY--TLVEKFKP-MEQLCRFVLAQKGKSG--IVYCNSR 264
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I++ L GV+A YH M + RE+ R F RD I+V+VAT+AFGMGI+K +VR
Sbjct: 265 NKVERIAETLCNKGVRAAAYHAGMENGLREKVQRDFQRDNIQVVVATIAFGMGINKSNVR 324
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V H+ P+++ESYYQE+GR GRD + + L+Y +++ + E QR
Sbjct: 325 FVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYDPADYVWLNKMLMEKPETPQRQIEQH 384
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 385 KLQAIGEFAESQTCRR 400
>gi|170718152|ref|YP_001785180.1| ATP-dependent DNA helicase RecQ [Haemophilus somnus 2336]
gi|168826281|gb|ACA31652.1| ATP-dependent DNA helicase RecQ [Haemophilus somnus 2336]
Length = 624
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 160/376 (42%), Positives = 226/376 (60%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L FGY FR Q +VI+ + K+D LV+MATG GKSLCYQ+P L LV+SP
Sbjct: 26 LDILHSVFGYQSFRKGQLEVIEATLAKKDSLVIMATGGGKSLCYQIPALCFSGLTLVISP 85
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L GINA++L S+QT VQ KA +G +LL+++PEKA + SF
Sbjct: 86 LISLMKDQVDQLLANGINADYLNSSQTFEQQQLVQNKAMSGKLKLLYISPEKA--LTTSF 143
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + V AVDE HCIS+WGHDFR EY QL L+ P +ALTATA + R D
Sbjct: 144 FHFISHCKVSFIAVDETHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATADQATRQD 203
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ LKL NP++ I SFDR N+ Y + + + + +++L Q I K G I+YC +
Sbjct: 204 ILIHLKLSNPHIYIGSFDRPNIRYSL--VEKFKP-MEQLSQFIAKQKGKNG--IIYCNSR 258
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I+++L+Q G+ A YH M ++ RE R F D ++++VAT+AFGMGI+K +VR
Sbjct: 259 NKVERIAESLRQKGISAEAYHAGMSNEQREFVQRAFQHDNVQIVVATIAFGMGINKSNVR 318
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V H+ P+++E+YYQE+GR GRD + + L+Y +++A E QR +
Sbjct: 319 FVAHFDLPRSIEAYYQETGRAGRDDLPAEAVLFYEPADYAWLQKVLLEKPDIPQRQIELH 378
Query: 359 SLLAAQRYCLLTTCRR 374
L + + CRR
Sbjct: 379 KLQSIGEFAESQICRR 394
>gi|319902947|ref|YP_004162675.1| ATP-dependent DNA helicase, RecQ-like protein [Bacteroides
helcogenes P 36-108]
gi|319417978|gb|ADV45089.1| ATP-dependent DNA helicase, RecQ-like protein [Bacteroides
helcogenes P 36-108]
Length = 603
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 165/380 (43%), Positives = 233/380 (61%), Gaps = 17/380 (4%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ TLK YFGY FRP Q+ +I+ +++++D LV+M TG GKS+CYQLP L+ TA+VVS
Sbjct: 1 MLQTLKTYFGYDSFRPLQETIIRHLLDRKDALVLMPTGGGKSICYQLPALLCEGTAVVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L GI A L S ++ S++ G +LL+++PEK ++
Sbjct: 61 PLISLMKDQVETLCANGIAAGALNSNNDETENASLRRLCMEGKLKLLYISPEKL----LA 116
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
+ LL+ + LFA+DEAHCIS+WGHDFR EY Q+ L +P +ALTATA + R
Sbjct: 117 EANYLLRDMHISLFAIDEAHCISQWGHDFRPEYTQMGVLHQQFPQIPIIALTATADKITR 176
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRG--QSFVDELVQEILKSVAGAGSIIVY 234
DII L L P + I+SFDR NL VK RG Q + + + + G II Y
Sbjct: 177 EDIIKQLHLNQPKIFISSFDRPNLSLTVK---RGYQQKEKGKAILDFINRHPGECGII-Y 232
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
CM+ E +++ L++ G+KA YH + + R+EA FI D ++V+ AT+AFGMGIDK
Sbjct: 233 CMSRSKTESVAQMLQKQGIKAAIYHAGLSAAKRDEAQDDFINDRVQVVCATIAFGMGIDK 292
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
+VR VIHY PK++ES+YQE GR GRDG+ S L+Y+ ++ + ES Q++
Sbjct: 293 SNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTLLFYSLADLILLTKFATES---GQQS 349
Query: 355 AIMESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 350 INIEKLQRMQQYAEADICRR 369
>gi|300024077|ref|YP_003756688.1| ATP-dependent DNA helicase RecQ [Hyphomicrobium denitrificans ATCC
51888]
gi|299525898|gb|ADJ24367.1| ATP-dependent DNA helicase RecQ [Hyphomicrobium denitrificans ATCC
51888]
Length = 728
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 162/377 (42%), Positives = 225/377 (59%), Gaps = 10/377 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ L+ FGY FRP Q D+I ++ DCL +M TG GKSLCYQ+P LV T +VVSPL
Sbjct: 25 AKLEDVFGYKGFRPLQGDIIDTVLRGGDCLALMPTGGGKSLCYQIPSLVRRGTGIVVSPL 84
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGY----FQLLFMTPEKACIIPISF 118
I+LMQDQV +LK G+ A FL S Q D S Q + E + LL++ PE+ ++
Sbjct: 85 IALMQDQVDALKDLGVKAAFLNSTQ-DRSTQDQIERQFAADALDLLYVAPER--LVQERT 141
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
S L + + LFA+DEAHC+S+WGHDFR EY+QL L VP +ALTATA E+ R D
Sbjct: 142 LSLLELSDIALFAIDEAHCVSQWGHDFRPEYRQLKILAQRFPRVPRIALTATADERTRQD 201
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
II+ L L+N +ASFDR N+ Y + + G + E + + +++ + IVYC++
Sbjct: 202 IISELSLENAASFVASFDRPNIRYTIAELGSGST--RERLWQFIEAEHPTDAGIVYCLSR 259
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K VEE + L G KA YH + + R A F+ +E ++VAT+AFGMGIDKPDVR
Sbjct: 260 KSVEETAAWLSSKGRKALAYHAGLDAHIRAGAQTKFLTEEGLIIVATIAFGMGIDKPDVR 319
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQ-TENQRTAIM 357
V H PK++ESYYQE+GR GRDG + W+ Y + + + G+S+ +E +T
Sbjct: 320 FVAHLNLPKSIESYYQETGRAGRDGEPANAWMAYGLQDIVQLRQWIGQSEGSEAFKTVQR 379
Query: 358 ESLLAAQRYCLLTTCRR 374
+ L A + CRR
Sbjct: 380 QKLDALIGLAEMPGCRR 396
>gi|416894183|ref|ZP_11924993.1| ATP-dependent DNA helicase [Aggregatibacter aphrophilus ATCC 33389]
gi|347813652|gb|EGY30318.1| ATP-dependent DNA helicase [Aggregatibacter aphrophilus ATCC 33389]
Length = 630
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 227/376 (60%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L FGY FR Q+++I + +DCLV+MATG+GKSLCYQ+P L LVVSP
Sbjct: 33 LDVLHSVFGYQSFRKGQQEIIHAALSGQDCLVIMATGTGKSLCYQIPALCFDGMTLVVSP 92
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ GI A++L S QT VQ +A +G +LL+++PEK ++ SF
Sbjct: 93 LISLMKDQVDQLRTNGIEADYLNSTQTFEEQQQVQNRAISGQLKLLYLSPEK--VMTNSF 150
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + V A+DEAHCIS+WGHDFR EY QL L+ VP +ALTATA + + D
Sbjct: 151 FQFISHCNVSFIAIDEAHCISQWGHDFRPEYTQLGGLKGCFPKVPIMALTATADQTTQQD 210
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ +L+L P+ + SFDR N+ Y ++ + + +++L + +L +G IVYC +
Sbjct: 211 ILQNLRLNRPHFHVGSFDRPNIRY--TLVEKFKP-MEQLCRFVLAQKGKSG--IVYCNSR 265
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I++ L GV+A YH M + RE+ R F RD I+V+VAT+AFGMGI+K +VR
Sbjct: 266 NKVERIAETLCNKGVRAAAYHAGMENTLREKVQRDFQRDNIQVVVATIAFGMGINKSNVR 325
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V H+ P+++ESYYQE+GR GRD + + L+Y +++ + E QR
Sbjct: 326 FVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYDPADYVWLNKMLMEKPETPQRQIEQH 385
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 386 KLQAIGEFAESQTCRR 401
>gi|167763147|ref|ZP_02435274.1| hypothetical protein BACSTE_01517 [Bacteroides stercoris ATCC
43183]
gi|167698441|gb|EDS15020.1| ATP-dependent DNA helicase RecQ [Bacteroides stercoris ATCC 43183]
Length = 604
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 163/378 (43%), Positives = 233/378 (61%), Gaps = 13/378 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ TLK YFGY FRP Q+++I+ I++ D LV+M TG GKS+CYQLP L+ TA+VVS
Sbjct: 1 MLQTLKTYFGYDSFRPLQEEIIRHILDGNDALVLMPTGGGKSICYQLPALLREGTAVVVS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSA--QTDSSVQTKA-ETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L GI+A L S+ +T+++ +A G +LL+++PEK ++
Sbjct: 61 PLISLMKDQVEALCANGISAGALNSSNDETENAALRRACMEGRLKLLYISPEKL----LA 116
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
+ LL+ + LFA+DEAHCIS+WGHDFR EY Q+ L VP +ALTATA + R
Sbjct: 117 EANYLLRDMHISLFAIDEAHCISQWGHDFRPEYAQMGILHQQFPHVPIIALTATADKITR 176
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DII L L +P I+SFDR NL VK + + ++ I + +G I+YCM
Sbjct: 177 EDIIRQLHLNHPRTFISSFDRPNLSLTVKRGYQQKEKSKTILDFIARHPGESG--IIYCM 234
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ E +++ L++ G++ YH + R+EA FI D ++V+ AT+AFGMGIDK +
Sbjct: 235 SRSKTESVAQMLQKHGIRTAVYHAGLSPSLRDEAQDDFINDRVQVVCATIAFGMGIDKSN 294
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY PK++ES+YQE GR GRDG+ S L+Y+ ++ + ES Q+
Sbjct: 295 VRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTLLFYSLADLILLTKFATES---GQQNIN 351
Query: 357 MESLLAAQRYCLLTTCRR 374
+E L Q+Y CRR
Sbjct: 352 LEKLQRMQQYAESDICRR 369
>gi|32564293|ref|NP_495324.2| Protein WRN-1 [Caenorhabditis elegans]
gi|29428119|sp|Q19546.2|WRN_CAEEL RecName: Full=Probable Werner syndrome ATP-dependent helicase
homolog 1
gi|351060519|emb|CCD68193.1| Protein WRN-1 [Caenorhabditis elegans]
Length = 1056
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 159/387 (41%), Positives = 239/387 (61%), Gaps = 23/387 (5%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
++ L ++FG+ FR Q DV++ ++ +D V+M+TG GKS+CYQLP L+ +VVSP
Sbjct: 216 LNALNEFFGHKGFREKQWDVVRNVLGGKDQFVLMSTGYGKSVCYQLPSLLLNSMTVVVSP 275
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGY-FQLLFMTPEKACIIPISFWS 120
LISLM DQV +L +GI+A L T A + + ++M+PE ++
Sbjct: 276 LISLMNDQVTTLVSKGIDAVKLDGHSTQIEWDQVANNMHRIRFIYMSPE---MVTSQKGL 332
Query: 121 KLL---KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR--TFLLGVPFVALTATATEKV 175
+LL + + L A+DEAHC+S+WGHDFR Y+ L ++R + L +P +ALTATAT +V
Sbjct: 333 ELLTSCRKHISLLAIDEAHCVSQWGHDFRNSYRHLAEIRNRSDLCNIPMIALTATATVRV 392
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDEL----VQEILKSVAGAGSI 231
R D+I +L+L+ P +T SFDRKNL+ V + + ++L + +K G
Sbjct: 393 RDDVIANLRLRKPLITTTSFDRKNLYISV---HSSKDMAEDLGLFMKTDEVKGRHFGGPT 449
Query: 232 IVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMG 291
I+YC T + V++++ L+++GV++ YH + RE+AH F+RD+I +VAT+AFGMG
Sbjct: 450 IIYCQTKQMVDDVNCVLRRIGVRSAHYHAGLTKNQREKAHTDFMRDKITTIVATVAFGMG 509
Query: 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTEN 351
IDKPDVR+VIHYGCP +ESYYQE GR GRDG S+C +++A + F SQ
Sbjct: 510 IDKPDVRNVIHYGCPNNIESYYQEIGRAGRDGSPSICRVFWAPKDLNTIKFKLRNSQ--- 566
Query: 352 QRTAIMESL--LAAQRYCLLTT--CRR 374
Q+ ++E+L + Q +LTT CRR
Sbjct: 567 QKEEVVENLTMMLRQLELVLTTVGCRR 593
>gi|412992354|emb|CCO20067.1| predicted protein [Bathycoccus prasinos]
Length = 1028
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 179/418 (42%), Positives = 243/418 (58%), Gaps = 51/418 (12%)
Query: 8 YFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTG-KTALVVSPLISLM 66
Y+GYS FRP Q++VI+ +E RD V +TGSGKSL YQLP L G K ++VVSPLISLM
Sbjct: 113 YYGYSNFRPGQEEVIKAAMEGRDTCVFWSTGSGKSLAYQLPALHEGGKMSIVVSPLISLM 172
Query: 67 QDQVMSLKQ--------RGINAE---FLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIP 115
QDQV +L G N + FLGS QTD++V+ + G ++++F+TPEK +
Sbjct: 173 QDQVTALNNTVGNIADGSGGNNDIACFLGSGQTDTTVEERVFRGDYKIVFVTPEKISFVS 232
Query: 116 IS-----------FWSKL--LKA--GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLL 160
F +L LKA + L A+DEAHCIS+WGHDFR+ YK+L LR L
Sbjct: 233 DDGGFGSSSSSSVFMQRLQSLKAMNKIGLIAIDEAHCISQWGHDFRVSYKKLAVLRDQLP 292
Query: 161 GVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNL--------------FYGVKV 206
G+P +ALTATA + VR DI +LKL NPY+ S DR NL Y V
Sbjct: 293 GIPIMALTATAVKHVREDISKTLKLSNPYIATNSVDRPNLRIQCHRKVDFSSDLNYIVSQ 352
Query: 207 INRGQSFVDELVQEILKSVAGA------GSIIVYCMTIKDVEEISKALK-QLGVK-AGTY 258
I S ++ + +++ + S I+YC TIK+V +++ AL+ ++GV+ Y
Sbjct: 353 ITAAASIQEKQQHQQKRALPASLAKPKYDSSIIYCATIKEVVQLTGALQHRIGVENVAMY 412
Query: 259 HGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGR 318
HG M + R +AH F+ E +V+VAT AFGMGIDK DVR VIH G PKT+E YYQ+ GR
Sbjct: 413 HGSMTPQDRHDAHMRFLSSECKVVVATTAFGMGIDKADVRTVIHMGAPKTMEEYYQQIGR 472
Query: 319 CGRDGIASVCWLYYARSNFAK--GDFYCGESQTENQRTAIMESLLAAQRYCLLTTCRR 374
GRDGIAS + ++ ++F+K GDFY E+ +T + + Q CRR
Sbjct: 473 AGRDGIASNVSMLFSDNDFSKFSGDFYTKGLTKESLQTQLNSTEKLKQYAIEREKCRR 530
>gi|406901072|gb|EKD43834.1| hypothetical protein ACD_72C00100G0005 [uncultured bacterium]
Length = 619
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 150/373 (40%), Positives = 222/373 (59%), Gaps = 8/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK FGY FR Q+++IQ I++KRD V+M TG GKSLCYQ+P L+ +V+SPLI+
Sbjct: 8 LKTKFGYESFRFNQEEIIQTIMQKRDAFVLMPTGGGKSLCYQIPALLFDGLTVVISPLIA 67
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTD---SSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L+ GI A ++ S+ S + + + +LL+++PE+ F
Sbjct: 68 LMKDQVDALRLNGIKAAYMNSSMDSDEISDLYEQLDRHEIKLLYVSPERLLGNNQQFLVY 127
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + LFA+DEAHCIS WGHDFR EY+ L L+ VP +ALTATA R DI+N
Sbjct: 128 LRDLNISLFAIDEAHCISSWGHDFRPEYRMLSSLKKDFPDVPTIALTATADNLTRDDILN 187
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
LKLKNP + ++SF+R N+ Y V+ + +E+V + K + +G I+Y ++
Sbjct: 188 KLKLKNPSIFVSSFNRPNINYSVEP---KRKMYEEIVSYLKKHRSDSG--IIYVLSRNSA 242
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E++++ LK+ G YH + ++ R+ +FI+D++++MVAT+AFGMGI+K +VR VI
Sbjct: 243 EKMAEKLKKDGFSTKPYHAGLNNEKRQRHQEMFIKDQVKIMVATIAFGMGINKSNVRFVI 302
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H PK +ESYYQE+GR GRDG+ S LYY+ + K + Q ++ L
Sbjct: 303 HADLPKNIESYYQETGRAGRDGLKSEAILYYSGGDVVKLKRFAMVENNPEQTRVMLHKLS 362
Query: 362 AAQRYCLLTTCRR 374
C CRR
Sbjct: 363 QMATLCEANACRR 375
>gi|260913220|ref|ZP_05919702.1| ATP-dependent helicase RecQ [Pasteurella dagmatis ATCC 43325]
gi|260632807|gb|EEX50976.1| ATP-dependent helicase RecQ [Pasteurella dagmatis ATCC 43325]
Length = 631
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 159/376 (42%), Positives = 231/376 (61%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
++ L+ FGY FR Q++VI+ + +D LV+MATG+GKSLCYQ+P L LV+SP
Sbjct: 27 LNVLQSTFGYQSFRKGQEEVIESALAGKDSLVIMATGNGKSLCYQIPALCFDGLTLVISP 86
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L GI A++L S+QT +V +K +G +LL+++PEK ++ SF
Sbjct: 87 LISLMKDQVDQLLANGIEADYLNSSQTFAEQQNVHSKVMSGTLKLLYVSPEK--VMTNSF 144
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + V A+DEAHCIS+WGHDFR EY QL L+ P +ALTATA R D
Sbjct: 145 FHLISHCKVSFIAIDEAHCISQWGHDFRPEYTQLGGLKHAFPNAPIMALTATADHATRQD 204
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ LKL+ PY+ I SFDR N+ Y +I + + +++L + +L +G I+YC +
Sbjct: 205 ILVHLKLEQPYIYIGSFDRPNIRY--TLIEKYKP-MEQLCRFVLGQKGKSG--IIYCNSR 259
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE ++++L+ GVKA YH M + RE+ R F RD+++V+VAT+AFGMGI+K +VR
Sbjct: 260 NKVERVAESLRNKGVKAQAYHAGMETTQREDVQRAFQRDDLQVVVATIAFGMGINKSNVR 319
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V H+ P+++ESYYQE+GR GRD + + L+Y +++A E QR
Sbjct: 320 FVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLHKILFEKPETPQRQIEEL 379
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 380 KLQAIGEFAESQTCRR 395
>gi|324504342|gb|ADY41874.1| Werner syndrome ATP-dependent helicase 1 [Ascaris suum]
Length = 916
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 152/340 (44%), Positives = 212/340 (62%), Gaps = 10/340 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L KYFG+ FRP Q ++I+ +E++D LVVM+TG GKS+CYQ+P L+ L+VSPLIS
Sbjct: 48 LNKYFGHKSFRPLQWEIIRNALERKDQLVVMSTGYGKSICYQMPSLLKDNLTLIVSPLIS 107
Query: 65 LMQDQVMSLKQRGINAE-FLGSAQTDSSVQTKAE--TGYFQLLFMTPEKACIIPISFWSK 121
LM DQV + GI A G Q + + + G +LL++TPE P
Sbjct: 108 LMNDQVTNASANGIAASCITGETQREDRNEVFEDCLNGRLRLLYVTPEFGLNNPELIRKI 167
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L+ G L A+DEAHC+S+WGH+FR +Y+ L +R + VP +ALTATAT +V+ DII
Sbjct: 168 SLRIG--LLAIDEAHCVSQWGHEFRSDYRCLSSIRDIIGDVPLMALTATATPEVKKDIIK 225
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKV---INRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
+L ++ S DR NL+ V+ I QS V E+ + ++ G I+YC T
Sbjct: 226 NLHMRQAVTLCTSLDRSNLYLEVRSPTSIEGLQSLVTEV--DDMRGKHFGGPTIIYCPTR 283
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE+++K L +GVK YH + SKAR +AH F++D+I +VAT+AFGMGIDKPDVR
Sbjct: 284 ASVEDVNKVLSGMGVKCAMYHAGLSSKARSKAHENFVKDKITTIVATVAFGMGIDKPDVR 343
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
++IH+G PK +ESYYQE GR GRDG S C ++Y+ + A
Sbjct: 344 NIIHFGAPKGIESYYQEIGRAGRDGFPSKCIVFYSDNEIA 383
>gi|315635218|ref|ZP_07890495.1| ATP-dependent helicase RecQ [Aggregatibacter segnis ATCC 33393]
gi|315475964|gb|EFU66719.1| ATP-dependent helicase RecQ [Aggregatibacter segnis ATCC 33393]
Length = 629
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 157/375 (41%), Positives = 228/375 (60%), Gaps = 10/375 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ L FGY FR Q+++IQ + +DCLV+MATG+GKSLCYQ+P L LVVSPL
Sbjct: 33 NVLHSVFGYQAFRKGQEEIIQAALNGQDCLVIMATGTGKSLCYQIPALCFDGMTLVVSPL 92
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLM+DQV L+ G+ A++L S+QT VQ +A +G +LL+++PEK ++ SF+
Sbjct: 93 ISLMKDQVDQLRASGVEADYLNSSQTFEEQQQVQNRAISGQLKLLYLSPEK--VMTNSFF 150
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+ V A+DEAHCIS+WGHDFR EY QL L+ VP +ALTATA + DI
Sbjct: 151 QFISLCQVSFIAIDEAHCISQWGHDFRPEYTQLGGLKGSFPNVPIMALTATADPTTQQDI 210
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+ +L+L P+ + SFDR N+ Y ++ + + +++L + ++ +G IVYC +
Sbjct: 211 LQNLRLNRPHFHVGSFDRPNIRY--TLVEKFKP-MEQLCRFVVAQKGKSG--IVYCNSRN 265
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
VE I++ L GV+A YH M + RE+ R F RD I+V+VAT+AFGMGI+K +VR
Sbjct: 266 KVERIAETLCNKGVRAAAYHAGMENSLREKVQRDFQRDNIQVVVATIAFGMGINKSNVRF 325
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V H+ P+++ESYYQE+GR GRD + + L+Y +++ + E QR
Sbjct: 326 VAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYDPADYVWLNKMLMEKPETPQRQIEQHK 385
Query: 360 LLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 386 LQAIGEFAESQTCRR 400
>gi|50123092|ref|YP_052259.1| ATP-dependent DNA helicase RecQ [Pectobacterium atrosepticum
SCRI1043]
gi|49613618|emb|CAG77069.1| ATP-dependent DNA helicase [Pectobacterium atrosepticum SCRI1043]
Length = 608
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 159/376 (42%), Positives = 226/376 (60%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
V L+ FGY FRP Q+++I + +DCLV+M TG GKSLCYQ+P LV LVVSP
Sbjct: 14 VQVLRDTFGYQQFRPGQQEIISATLSGQDCLVIMPTGGGKSLCYQIPALVMDGLTLVVSP 73
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ G++A L S QT V TG +LL++ PE+ + SF
Sbjct: 74 LISLMKDQVDQLQAYGVSAACLNSTQTREQQFEVMAGCRTGQIKLLYIAPER--LTTESF 131
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
L + L AVDEAHCIS+WGHDFR EY+ L +++ +PF+ALTATA E R D
Sbjct: 132 LDHLAHWQISLIAVDEAHCISQWGHDFRPEYRALGQIKQRFPHLPFIALTATADETTRND 191
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L L++P + I+SFDR N+ Y ++ + + +D+L + +G I+YC +
Sbjct: 192 IVRLLDLQSPLIQISSFDRPNIRY--TLVEKFKP-LDQLWMFVQAQRGKSG--IIYCNSR 246
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE+IS L+ G+ AG YH + ++ R + F+RD+++V+VAT+AFGMGI+KP+VR
Sbjct: 247 SRVEDISARLQARGLSAGAYHAGLDNERRAQVQEAFLRDDLQVVVATVAFGMGINKPNVR 306
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+H+ P+ +ESYYQE+GR GRDG+A+ L+Y ++ A E Q
Sbjct: 307 FVVHFDIPRNIESYYQETGRAGRDGLAAEAALFYDPADMAWLRRCLEEKPAGPQLDIERH 366
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 367 KLNAMGAFAEAQTCRR 382
>gi|390941990|ref|YP_006405751.1| ATP-dependent DNA helicase RecQ [Belliella baltica DSM 15883]
gi|390415418|gb|AFL82996.1| ATP-dependent DNA helicase RecQ [Belliella baltica DSM 15883]
Length = 711
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 151/373 (40%), Positives = 223/373 (59%), Gaps = 8/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK++FGYS FR QK +IQ ++ K+D +V+M TG GKS+CYQ+P ++ LV+SPLIS
Sbjct: 14 LKEFFGYSEFRGNQKQIIQSVLSKKDTIVLMPTGGGKSVCYQVPAMIFDGLTLVISPLIS 73
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L GI A FL S+Q+ S + ++ ++G +LL++ PE+
Sbjct: 74 LMKDQVDALNANGIPAAFLNSSQSQSEQRFISSQIQSGKIKLLYIAPERLYRGDYPLIDF 133
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + L A+DEAHC+S+WGHDFR EY ++ +LR +PF+ALTATA + R DI +
Sbjct: 134 LKTVNLSLVAIDEAHCVSQWGHDFRPEYLKIGELRKSFPQIPFIALTATADKLTRKDIAD 193
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L LK P I+SFDR N+ Y V + E + + K +G ++YC++ K+V
Sbjct: 194 KLGLKTPQWFISSFDRSNITYRVTAKRDAMGKLLEFL-DFHKKDSG----VIYCLSRKNV 248
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
EE + L+ G+ A YH + + RE+ LFI+DE+++MVAT+AFGMGIDK +VR V+
Sbjct: 249 EETASELQARGLSALPYHAGLPREEREKNQELFIKDEVKIMVATIAFGMGIDKSNVRFVV 308
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H P+ +E YYQE+GR GRDG+ S L+Y+ + + + E L
Sbjct: 309 HMNMPQNVEGYYQETGRAGRDGLPSDALLFYSGQDANTLGRMLDRGDNQEFAHVMQEKLE 368
Query: 362 AAQRYCLLTTCRR 374
+ +C CRR
Sbjct: 369 KMKSFCQTKICRR 381
>gi|383934161|ref|ZP_09987603.1| ATP-dependent DNA helicase RecQ [Rheinheimera nanhaiensis E407-8]
gi|383704617|dbj|GAB57694.1| ATP-dependent DNA helicase RecQ [Rheinheimera nanhaiensis E407-8]
Length = 604
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 150/377 (39%), Positives = 226/377 (59%), Gaps = 10/377 (2%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ LK++FGYS FR Q VI+ + +D V+M TG GKSLCYQLP L+ + +VVS
Sbjct: 5 LLPLLKQHFGYSEFRSGQHAVIEAALAGQDSFVLMPTGGGKSLCYQLPALLLPQVTIVVS 64
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQ---TKAETGYFQLLFMTPEKACIIPIS 117
PL+SLM+DQV +LK GI AEF+ S+ + V + G +LL++ PE+ ++
Sbjct: 65 PLMSLMKDQVDALKANGIAAEFVNSSLSREQVLQVFARLRQGTLKLLYVAPER--LLQPQ 122
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
F +L GV LFA+DEAHCIS+WGHDFR +Y L L+ VP +ALTATA R
Sbjct: 123 FLDRLQDVGVSLFAIDEAHCISQWGHDFRPDYMALALLKQRFASVPVMALTATADSATRQ 182
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI+ L L+ PYV + SFDR N+ Y V+ R ++L+ + + +G IVYC +
Sbjct: 183 DILQQLNLQQPYVHLGSFDRPNIRYTVQEKFRP---TEQLISYLQQQDGASG--IVYCSS 237
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
+ V+E+++ LKQ G A YH + S R + F RD+ +++VAT+AFGMG++K ++
Sbjct: 238 RRKVDELTEQLKQRGFNAAAYHAGLSSDERNQVQDAFKRDDYQLIVATVAFGMGVNKSNI 297
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R V+H+ P+T+E+YYQE+GR GRDG+ + L + ++ + + + + +
Sbjct: 298 RFVVHFELPRTIEAYYQETGRAGRDGVPAEAMLLFDPADIGRMKRWLDNEENQQRAEVTW 357
Query: 358 ESLLAAQRYCLLTTCRR 374
+ LA + TCRR
Sbjct: 358 QRFLAMAAFAEAQTCRR 374
>gi|422337702|ref|ZP_16418672.1| ATP-dependent DNA helicase recQ [Aggregatibacter aphrophilus F0387]
gi|353345034|gb|EHB89332.1| ATP-dependent DNA helicase recQ [Aggregatibacter aphrophilus F0387]
Length = 631
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 227/376 (60%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L FGY FR Q+++I + +DCLV+MATG+GKSLCYQ+P L LVVSP
Sbjct: 33 LDVLHSVFGYQSFRKGQQEIIHAALSGQDCLVIMATGTGKSLCYQIPALCFDGMTLVVSP 92
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ GI A++L S QT VQ +A +G +LL+++PEK ++ SF
Sbjct: 93 LISLMKDQVDQLRTNGIEADYLNSTQTFEEQQQVQNRAISGQLKLLYLSPEK--VMTNSF 150
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + V A+DEAHCIS+WGHDFR EY QL L+ VP +ALTATA + + D
Sbjct: 151 FQFISHCNVSFIAIDEAHCISQWGHDFRPEYTQLGGLKGCFPKVPIMALTATADQTTQQD 210
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ +L+L P+ + SFDR N+ Y ++ + + +++L + +L +G IVYC +
Sbjct: 211 ILQNLRLNRPHFHVGSFDRPNIRY--TLVEKFKP-MEQLCRFVLAQKGKSG--IVYCNSR 265
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I++ L GV+A YH M + RE+ R F RD I+V+VAT+AFGMGI+K +VR
Sbjct: 266 NKVERIAETLCNKGVRAAAYHAGMENTLREKVQRDFQRDNIQVVVATIAFGMGINKSNVR 325
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V H+ P+++ESYYQE+GR GRD + + L+Y +++ + E QR
Sbjct: 326 FVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYDPADYVWLNKILMEKPETPQRQIEQH 385
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 386 KLQAIGEFAESQTCRR 401
>gi|261823379|ref|YP_003261485.1| ATP-dependent DNA helicase RecQ [Pectobacterium wasabiae WPP163]
gi|261607392|gb|ACX89878.1| ATP-dependent DNA helicase RecQ [Pectobacterium wasabiae WPP163]
gi|385873847|gb|AFI92367.1| ATP-dependent DNA helicase RecQ [Pectobacterium sp. SCC3193]
Length = 608
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 159/376 (42%), Positives = 226/376 (60%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
V L+ FGY FRP Q+++I + +DCLV+M TG GKSLCYQ+P LV LVVSP
Sbjct: 14 VQVLRDTFGYQQFRPGQQEIISATLSGQDCLVIMPTGGGKSLCYQIPALVMDGLTLVVSP 73
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ G++A L S QT V TG +LL++ PE+ + SF
Sbjct: 74 LISLMKDQVDQLQAYGVSAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPER--LTTDSF 131
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
L + L AVDEAHCIS+WGHDFR EY+ L +++ +PF+ALTATA E R D
Sbjct: 132 LDHLAHWQISLIAVDEAHCISQWGHDFRPEYRALGQIKQRFPHLPFIALTATADETTRND 191
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L L++P + I+SFDR N+ Y ++ + + +D+L + +G I+YC +
Sbjct: 192 IVRLLDLQSPLIQISSFDRPNIRY--TLVEKFKP-LDQLWMFVQGQRGKSG--IIYCNSR 246
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE+IS L+ G+ AG YH + ++ R + F+RD+++V+VAT+AFGMGI+KP+VR
Sbjct: 247 SRVEDISARLQARGLSAGAYHAGLDNERRAQVQEAFLRDDLQVVVATVAFGMGINKPNVR 306
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+H+ P+ +ESYYQE+GR GRDG+A+ L+Y ++ A E Q
Sbjct: 307 FVVHFDIPRNIESYYQETGRAGRDGLAAEAALFYDPADMAWLRRCLEEKPAGPQLDIERH 366
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 367 KLNAMGAFAEAQTCRR 382
>gi|194332913|ref|YP_002014773.1| ATP-dependent DNA helicase RecQ [Prosthecochloris aestuarii DSM
271]
gi|194310731|gb|ACF45126.1| ATP-dependent DNA helicase RecQ [Prosthecochloris aestuarii DSM
271]
Length = 617
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 158/377 (41%), Positives = 223/377 (59%), Gaps = 10/377 (2%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+++TL K FG++ FRP Q +V+Q I+ RD VM TG GKSLCYQLP +V T +V+S
Sbjct: 14 VLNTLHKVFGFNAFRPNQGEVVQAILSGRDAFAVMPTGGGKSLCYQLPAVVMEGTCVVIS 73
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPIS 117
PLI+LM+DQV + GI A +L S+ S V ++ + LL++ PE+ +
Sbjct: 74 PLIALMKDQVDGARVNGIRAAYLNSSLSPDEQSLVMSELTSNRLDLLYVAPERFSLE--H 131
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
F + L + + + +DEAHCISEWGHDFR +Y L L VP A TATAT KV+
Sbjct: 132 FQTVLKEVKISMAVIDEAHCISEWGHDFRPDYLSLSALVELFPDVPVAAFTATATHKVQA 191
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI+ L L++P+V ASFDR NL Y V R + V E + +LKS G II Y +
Sbjct: 192 DILRKLGLRDPFVVRASFDRPNLTYDV----RFKDNVSEQLVGLLKSSPGKAGII-YRTS 246
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K V E + L+ G +A YH +G + R++ FIRDE V+VAT+AFGMGIDK ++
Sbjct: 247 RKSVNETTAMLQAKGFRALPYHAGLGDEERKKNQETFIRDEADVIVATVAFGMGIDKSNI 306
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIH PK++E+YYQE+GR GRDG + C L +++ + K F+ E +R +
Sbjct: 307 RFVIHADLPKSIENYYQETGRAGRDGEPAHCTLLFSQGDIPKVRFFIDTIIDETERNKAL 366
Query: 358 ESLLAAQRYCLLTTCRR 374
++L + + CRR
Sbjct: 367 DALQRVVSFASTSVCRR 383
>gi|408675008|ref|YP_006874756.1| ATP-dependent DNA helicase RecQ [Emticicia oligotrophica DSM 17448]
gi|387856632|gb|AFK04729.1| ATP-dependent DNA helicase RecQ [Emticicia oligotrophica DSM 17448]
Length = 715
Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 153/376 (40%), Positives = 232/376 (61%), Gaps = 11/376 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
LKKYFGY FRP Q ++I+ II ++DC+V+M TG GKS+C+Q+P +V LV+SPL
Sbjct: 5 EVLKKYFGYDSFRPLQAEIIETIIAQKDCMVLMPTGGGKSICFQVPAMVMPGITLVISPL 64
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
I+LMQDQV +LK GI A FL S + +++ + G +LL+++PEK + ++
Sbjct: 65 IALMQDQVQALKSNGIPAAFLNSTLSTIEQRTIEEDCKNGSLKLLYISPEK--LFSNNYL 122
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+ V A+DE+HC+S WGHDFR EY QL L+ VP VALTATA R DI
Sbjct: 123 GFIKTLNVNQIAIDESHCVSTWGHDFRPEYIQLKALKDTFPNVPMVALTATADRVTRKDI 182
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+N L + + I+SFDR NL ++V+ G++ + + + I K +G I+YC++ K
Sbjct: 183 LNQLGIPEALIFISSFDRPNL--NLRVLP-GRNRLKVIHEFIAKRTNQSG--IIYCLSRK 237
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
+ E++++ L++LG++A YH + ++ R E +I+DEI+V+VAT+AFGMGIDK +VR
Sbjct: 238 NTEDVAEGLRKLGIRAMHYHAGLDAQTRAEVQDAYIKDEIQVIVATIAFGMGIDKSNVRF 297
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI-ME 358
VIHY P +ES+YQE GR GRDG+ S L+Y+ + +S+ ++ + +
Sbjct: 298 VIHYSLPSNVESFYQEIGRAGRDGMKSDTLLFYSFGDIITRKEMIQKSELPDEMKEVQLA 357
Query: 359 SLLAAQRYCLLTTCRR 374
L ++Y CRR
Sbjct: 358 KLERMKQYAESEICRR 373
>gi|251793708|ref|YP_003008438.1| ATP-dependent DNA helicase RecQ [Aggregatibacter aphrophilus
NJ8700]
gi|247535105|gb|ACS98351.1| ATP-dependent DNA helicase RecQ [Aggregatibacter aphrophilus
NJ8700]
Length = 631
Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 227/376 (60%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L FGY FR Q+++I + +DCLV+MATG+GKSLCYQ+P L LVVSP
Sbjct: 33 LDVLHSVFGYQSFRKGQQEIIHAALSGQDCLVIMATGTGKSLCYQIPALCFDGMTLVVSP 92
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ GI A++L S QT VQ +A +G +LL+++PEK ++ SF
Sbjct: 93 LISLMKDQVDQLRTNGIEADYLNSTQTFEEQQQVQNRAISGQLKLLYLSPEK--VMTNSF 150
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + V A+DEAHCIS+WGHDFR EY QL L+ VP +ALTATA + + D
Sbjct: 151 FQFISHCNVSFIAIDEAHCISQWGHDFRPEYTQLGGLKGCFPKVPIMALTATADQTTQQD 210
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ +L+L P+ + SFDR N+ Y ++ + + +++L + +L +G IVYC +
Sbjct: 211 ILQNLRLNRPHFHVGSFDRPNIRY--TLVEKFKP-MEQLCRFVLAQKGKSG--IVYCNSR 265
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I++ L GV+A YH M + RE+ R F RD I+V+VAT+AFGMGI+K +VR
Sbjct: 266 NKVERIAETLCNKGVRAAAYHAGMENTLREKVQRDFQRDNIQVVVATIAFGMGINKSNVR 325
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V H+ P+++ESYYQE+GR GRD + + L+Y +++ + E QR
Sbjct: 326 FVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYDPADYVWLNKILMEKPETPQRQIEQH 385
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 386 KLQAIGEFAESQTCRR 401
>gi|145220257|ref|YP_001130966.1| ATP-dependent DNA helicase RecQ [Chlorobium phaeovibrioides DSM
265]
gi|145206421|gb|ABP37464.1| ATP-dependent DNA helicase RecQ [Chlorobium phaeovibrioides DSM
265]
Length = 622
Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 154/377 (40%), Positives = 225/377 (59%), Gaps = 10/377 (2%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M L+K FG+ FRP Q++V++ +++ RD VM TG GKSLCYQLP ++ T +V+S
Sbjct: 17 MHDALQKVFGFKGFRPNQREVVRALLDGRDVFAVMPTGGGKSLCYQLPAVLLPGTCMVIS 76
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPIS 117
PLI+LM+DQV + GI A +L S+ + + V + E+G LL++ PE+ + S
Sbjct: 77 PLIALMKDQVDGARANGIRAAYLNSSLSLADRRKVLDELESGSLDLLYVAPERFALD--S 134
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
F + K V + +DEAHCISEWGHDFR +Y QL L T VP TATAT++V++
Sbjct: 135 FRKLIGKVPVSMAVIDEAHCISEWGHDFRPDYLQLSSLVTMFRDVPVAGFTATATQRVQL 194
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
D + L L+ P+ ASFDR NL Y V + VD + +L++ +G II Y +
Sbjct: 195 DTLRRLALREPFTVRASFDRPNLTYSVLF----KDGVDAQIVSLLRAHSGKAGII-YRTS 249
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K V + + L+ G +A YH +G + RE FIRDE+ V+VAT+AFGMGIDK ++
Sbjct: 250 RKSVNDTAAMLQAKGFRALAYHAGLGDEERERNQNAFIRDEVDVIVATIAFGMGIDKSNI 309
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIH PK++E+YYQE+GR GRDG + C L +++ + AK F+ + E ++ +
Sbjct: 310 RFVIHADMPKSIENYYQETGRAGRDGEPAHCTLLFSQGDQAKLRFFIDTMEDEGEKARAL 369
Query: 358 ESLLAAQRYCLLTTCRR 374
E+L + CRR
Sbjct: 370 EALRKVASFASSGVCRR 386
>gi|416052424|ref|ZP_11578281.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
gi|347992055|gb|EGY33485.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
Length = 629
Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 157/376 (41%), Positives = 228/376 (60%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L FGY FR Q+++I ++ +DCLV+MATG+GKSLCYQ+P L LVVSP
Sbjct: 32 LHVLHSVFGYQSFRKGQQEIIDAVLSGQDCLVIMATGTGKSLCYQIPALCFDGMTLVVSP 91
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ G+ A++L S QT VQ +A +G +LL+++PEK ++ SF
Sbjct: 92 LISLMKDQVDQLRANGVEADYLNSTQTFEEQQQVQNRAISGQLKLLYLSPEK--VMANSF 149
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + V A+DEAHCIS+WGHDFR EY QL L+ VP +ALTATA + + D
Sbjct: 150 FQFISLCQVSFIAIDEAHCISQWGHDFRPEYTQLGGLKGSFPNVPIMALTATADQTTQQD 209
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ +L+L P+ + SFDR N+ Y ++ + + +++L + +L +G IVYC +
Sbjct: 210 ILKNLRLNRPHFYVGSFDRPNIRY--TLVEKFKP-MEQLCRFVLAQKGKSG--IVYCNSR 264
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I++ L GV+A YH M + RE+ R F RD I+V+VAT+AFGMGI+K +VR
Sbjct: 265 NKVERIAETLCNKGVRAAAYHAGMENGLREKVQRDFQRDNIQVVVATIAFGMGINKSNVR 324
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V H+ P+++ESYYQE+GR GRD + + L+Y +++ + E QR
Sbjct: 325 FVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYDPADYVWLNKMLMEKSETPQRQIEQH 384
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 385 KLQAIGEFAESQTCRR 400
>gi|170042986|ref|XP_001849186.1| werner syndrome helicase [Culex quinquefasciatus]
gi|167866388|gb|EDS29771.1| werner syndrome helicase [Culex quinquefasciatus]
Length = 1079
Score = 294 bits (753), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 168/375 (44%), Positives = 229/375 (61%), Gaps = 8/375 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+S L+ YFG+S FRP Q +I+ IIE +RD V+MATG GKSL YQ P + G+ LVVS
Sbjct: 12 LSALESYFGHSGFRPMQWRIIRSIIEERRDNCVIMATGYGKSLTYQFPSVFLGRLTLVVS 71
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+SL I A LGSAQ + V E G F+++++TPE +
Sbjct: 72 PLISLMEDQVLSLNLGNIPACLLGSAQRANLVPEIRE-GKFRVVYVTPEYLTGDTGRYLL 130
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
+ + + L A+DEAHC+S+WGHDFR Y+ L +R VP +A+TATAT VR DI+
Sbjct: 131 EQVLDQLVLIAIDEAHCLSKWGHDFRPAYRNLGVVRRICPRVPILAVTATATPNVRQDIV 190
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
SL L+ P V FDR NL + V++ + + D V+ +L S GSII+YC+T K
Sbjct: 191 TSLGLREPQVLCTGFDRPNLQFHVRMKSSLGFWED--VKGLL-SRNTEGSIIIYCLTRKQ 247
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
+EI L+ V+ YH + K R+E H F+RD ++++VAT+AFGMGIDKPDVR V
Sbjct: 248 TDEIVDTLRSCKVQCEAYHAGLTLKQRKEVHESFVRDRVQIIVATIAFGMGIDKPDVRLV 307
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHYG K LESYYQE+GR GRDG S +++ R++F +F + Q+ +E+L
Sbjct: 308 IHYGASKDLESYYQEAGRAGRDGQPSKVVMFWNRADFKTHEFLRENTPGGQQKN--LEAL 365
Query: 361 LAA-QRYCLLTTCRR 374
Y CRR
Sbjct: 366 SKKMHEYLDTRDCRR 380
>gi|421079860|ref|ZP_15540796.1| ATP-dependent helicase RecQ [Pectobacterium wasabiae CFBP 3304]
gi|401705347|gb|EJS95534.1| ATP-dependent helicase RecQ [Pectobacterium wasabiae CFBP 3304]
Length = 608
Score = 294 bits (753), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 159/376 (42%), Positives = 225/376 (59%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
V L+ FGY FRP Q+++I + +DCLV+M TG GKSLCYQ+P LV LVVSP
Sbjct: 14 VQVLRDTFGYQQFRPGQQEIISATLSGQDCLVIMPTGGGKSLCYQIPALVMDGLTLVVSP 73
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ G++A L S QT V TG +LL++ PE+ + SF
Sbjct: 74 LISLMKDQVDQLQAYGVSAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPER--LTTDSF 131
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
L + L AVDEAHCIS+WGHDFR EY+ L +++ +PF+ALTATA E R D
Sbjct: 132 LDHLAHWQISLIAVDEAHCISQWGHDFRPEYRALGQIKQRFPHLPFIALTATADETTRND 191
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L L +P + I+SFDR N+ Y ++ + + +D+L + +G I+YC +
Sbjct: 192 IVRLLDLHSPLIQISSFDRPNIRY--TLVEKFKP-LDQLWMFVQGQRGKSG--IIYCNSR 246
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE+IS L+ G+ AG YH + ++ R + F+RD+++V+VAT+AFGMGI+KP+VR
Sbjct: 247 SRVEDISARLQARGLSAGAYHAGLDNERRAQVQEAFLRDDLQVVVATVAFGMGINKPNVR 306
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+H+ P+ +ESYYQE+GR GRDG+A+ L+Y ++ A E Q
Sbjct: 307 FVVHFDIPRNIESYYQETGRAGRDGLAAEAALFYDPADMAWLRRCLEEKPAGPQLDIERH 366
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 367 KLNAMGAFAEAQTCRR 382
>gi|295133854|ref|YP_003584530.1| ATP-dependent DNA helicase RecQ [Zunongwangia profunda SM-A87]
gi|294981869|gb|ADF52334.1| ATP-dependent DNA helicase RecQ [Zunongwangia profunda SM-A87]
Length = 702
Score = 294 bits (753), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 153/377 (40%), Positives = 230/377 (61%), Gaps = 15/377 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+++TLK+YFGY FRP Q+ +IQ I + +D LV+M TG GKS+CYQLP ++ K +V+S
Sbjct: 6 LLNTLKEYFGYDSFRPLQEKIIQSIFDGKDNLVIMPTGGGKSICYQLPAILLPKLTIVIS 65
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQ---TDSSVQTKAETGYFQLLFMTPEKACIIPIS 117
PLI+LM+DQV LK GI AEFL S+Q S+ K + +LL++ PE I+
Sbjct: 66 PLIALMKDQVDGLKANGIKAEFLNSSQQVADQESIFQKIDKNELKLLYVAPESLQILD-- 123
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
L + + L A+DEAHCIS WGHDFR Y QL L+ P +ALTATA + R
Sbjct: 124 --RFLTEENISLIAIDEAHCISSWGHDFRPAYTQLGYLKKRFSNTPIIALTATADKATRH 181
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI L + + I+SFDRKNL V+ +G +++++ I + +G I+YC++
Sbjct: 182 DICQQLNIPDAKKHISSFDRKNLSLEVR---QGIKRFEQIIKFIKSRPSESG--IIYCLS 236
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K+ EE+++ L+Q G+ A YH + + RE FI D+ ++ AT+AFGMGIDK ++
Sbjct: 237 RKNTEELAEKLQQKGLDAKAYHAGLKHEERESIQDDFINDKTEIICATVAFGMGIDKSNI 296
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHY PK LE YYQE GR GRDG++S L+++ ++ + + ++ ++ + A +
Sbjct: 297 RWVIHYNMPKNLEGYYQEIGRAGRDGLSSDTLLFHSYADVVQLQRFAENTKNKDIQVAKL 356
Query: 358 ESLLAAQRYCLLTTCRR 374
+ + ++Y TCRR
Sbjct: 357 DRM---KQYAEALTCRR 370
>gi|422021069|ref|ZP_16367583.1| ATP-dependent DNA helicase RecQ [Providencia sneebia DSM 19967]
gi|414099974|gb|EKT61607.1| ATP-dependent DNA helicase RecQ [Providencia sneebia DSM 19967]
Length = 608
Score = 294 bits (752), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 156/339 (46%), Positives = 211/339 (62%), Gaps = 10/339 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
S L FGY FRP Q+ VI+ I++ RDCLV+M TG GKSLCYQ+P LV LVVSPL
Sbjct: 15 SILNSTFGYQSFRPGQEAVIRAILDNRDCLVLMPTGGGKSLCYQVPALVKDGITLVVSPL 74
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLM+DQV L+ G+NA L S+QT V G +LL++ PE+ ++ F
Sbjct: 75 ISLMKDQVDQLQLHGVNAACLNSSQTALEQREVMDACSQGKIKLLYVAPER--LLTDYFL 132
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
S L V LFAVDEAHCIS+WGHDFR EY+ + +LR VP +ALTATA E R DI
Sbjct: 133 SHLSNWNVALFAVDEAHCISQWGHDFRPEYRGMGQLRQHFPDVPVMALTATADETTRADI 192
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
I L L++P + I+SFDR N+ Y + +D+L I AG IVYC +
Sbjct: 193 IRRLDLQDPLIQISSFDRPNIRY---TLVEKYKPLDQLWFFIKAQKGKAG--IVYCNSRN 247
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
VEE ++ LK+ G+ YH + ++ RE F++D I+++VAT+AFGMGI+K +VR
Sbjct: 248 KVEETAERLKKRGLTVEAYHAGLDNQQREWVQDAFLKDNIQIVVATVAFGMGINKSNVRF 307
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
V H+ P+ +E+YYQE+GR GRDG+ + L+Y ++ A
Sbjct: 308 VAHFDIPRNIEAYYQETGRAGRDGVEAEAILFYDPADMA 346
>gi|225154844|ref|ZP_03723342.1| ATP-dependent DNA helicase RecQ [Diplosphaera colitermitum TAV2]
gi|224804374|gb|EEG22599.1| ATP-dependent DNA helicase RecQ [Diplosphaera colitermitum TAV2]
Length = 611
Score = 294 bits (752), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 151/380 (39%), Positives = 230/380 (60%), Gaps = 16/380 (4%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ TL FGY FRP Q+++I+ ++ RD ++ TG GKS+C+QLP + +VVS
Sbjct: 4 LLQTLHTTFGYDSFRPLQREIIETSLDGRDVFALLPTGGGKSMCFQLPAMHRVGLTIVVS 63
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKA---ETGYFQLLFMTPEKACIIPIS 117
PLI+LM+DQV L+ G+ A +L S+ T + +++ G ++LL++ PE+ + +
Sbjct: 64 PLIALMKDQVDQLQAAGVAATYLNSSLTSTESRSRLAGLHRGEWKLLYVAPER---LMLD 120
Query: 118 FWSKLLKA-GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
W++ L+A V FA+DEAHCISEWGHDFR EY+QL ++R L P +ALTATATE+VR
Sbjct: 121 NWAENLRAWNVAAFAIDEAHCISEWGHDFRPEYRQLARMRELLPEAPMMALTATATERVR 180
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAG--SIIVY 234
DII L L++P V +ASF+R NL Y +V+ + DE +++I+ V S IVY
Sbjct: 181 ADIIKHLNLRDPAVFVASFNRANLSY--RVLPK-----DEPLKQIIDFVKKREDESGIVY 233
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C + + +++L G A YH + + R +F+RD+++++ AT+AFGMGI+K
Sbjct: 234 CASRATAQRTAESLASRGYSARPYHAGLTADERSTNQEMFLRDDVKIICATIAFGMGINK 293
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
P+VR +IHY PK +E YYQE+GR GRDG+ C L ++ + AK + E +++
Sbjct: 294 PNVRWIIHYDLPKNIEGYYQETGRAGRDGLPGDCLLLFSGGDIAKQTHFLDEITDPHEQQ 353
Query: 355 AIMESLLAAQRYCLLTTCRR 374
L Y CRR
Sbjct: 354 VARHQLRLMAHYAESPGCRR 373
>gi|354595778|ref|ZP_09013795.1| ATP-dependent DNA helicase RecQ [Brenneria sp. EniD312]
gi|353673713|gb|EHD19746.1| ATP-dependent DNA helicase RecQ [Brenneria sp. EniD312]
Length = 610
Score = 294 bits (752), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 161/377 (42%), Positives = 227/377 (60%), Gaps = 12/377 (3%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
V L+ FGY FRP Q+++I I RDCLV+M TG GKSLCYQ+P LV LVVSP
Sbjct: 14 VQVLRDTFGYQQFRPGQQEIINATISGRDCLVIMPTGGGKSLCYQIPALVMDGLTLVVSP 73
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ G++A L S QT V +G +LL++ PE+ + SF
Sbjct: 74 LISLMKDQVDQLQAYGVSAACLNSTQTREQQHEVMAGCRSGQIKLLYIAPER--LTTDSF 131
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
L+ L AVDEAHCIS+WGHDFR EY+ L +++ G+P +ALTATA E R D
Sbjct: 132 LDHLIHWRPSLIAVDEAHCISQWGHDFRPEYRALGQVKQHFPGLPVIALTATADETTRSD 191
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L L++P V I+SFDR N+ Y ++ + + +D+L + +G I+YC +
Sbjct: 192 IVRLLDLQSPLVQISSFDRPNIRY--TLVEKFKP-LDQLWMFVQGQRGKSG--IIYCNSR 246
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE+IS L+ G+ YH + ++ R + F RD+++V+VAT+AFGMGI+KP+VR
Sbjct: 247 AKVEDISARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFGMGINKPNVR 306
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+H+ P+ +ESYYQE+GR GRDG+A+ L+Y ++ A C E + Q+ I
Sbjct: 307 FVVHFDIPRNIESYYQETGRAGRDGLAAEAALFYDPADMAWLR-RCLEEKPAGQQLDIER 365
Query: 359 SLLAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 366 HKLNAMGAFAEAQTCRR 382
>gi|345429420|ref|YP_004822538.1| ATP-dependent DNA helicase [Haemophilus parainfluenzae T3T1]
gi|301155481|emb|CBW14947.1| ATP-dependent DNA helicase [Haemophilus parainfluenzae T3T1]
Length = 621
Score = 293 bits (751), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 161/378 (42%), Positives = 226/378 (59%), Gaps = 14/378 (3%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
++ L+ FGY FR Q++VI + +D LVVMATG+GKSLCYQ+P L LV+SP
Sbjct: 19 LNMLRSVFGYQSFRKGQEEVIHAALSGQDALVVMATGNGKSLCYQIPALCFPGLTLVISP 78
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ GI A+FL S+QT V+ K +G +LL+++PEK ++ SF
Sbjct: 79 LISLMKDQVDQLQANGIEADFLNSSQTPEQQQQVENKLISGQLKLLYVSPEK--VMTNSF 136
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + A + A+DEAHCIS+WGHDFR EY QL L+ P +ALTATA R D
Sbjct: 137 FQLISYAQISFIAIDEAHCISQWGHDFRPEYTQLGGLKAAFPNAPIMALTATADYATRQD 196
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSF--VDELVQEILKSVAGAGSIIVYCM 236
I+ LKL +P+ I SFDR N+ Y ++ + F +++L + +L +G IVYC
Sbjct: 197 ILTHLKLDHPHKYIGSFDRPNIRYTLE-----EKFKPMEQLTRFVLAQKGKSG--IVYCN 249
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ VE I++ L+ GV A YH M + RE + F RD I+V+VAT+AFGMGI+K +
Sbjct: 250 SRSKVERIAETLRNKGVSAAAYHAGMETALRERVQQDFQRDNIQVVVATIAFGMGINKSN 309
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR V H+ P+++ESYYQE+GR GRD + + L+Y +++A E QR
Sbjct: 310 VRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYELADYAWLQKILLEKSETPQRQIE 369
Query: 357 MESLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 370 QHKLEAIGEFAESQTCRR 387
>gi|338740621|ref|YP_004677583.1| ATP-dependent DNA helicase RecQ [Hyphomicrobium sp. MC1]
gi|337761184|emb|CCB67017.1| ATP-dependent DNA helicase RecQ [Hyphomicrobium sp. MC1]
Length = 727
Score = 293 bits (751), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 151/333 (45%), Positives = 209/333 (62%), Gaps = 7/333 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+TL+ FGY FR +Q D+I+ ++ DCL +M TG GKSLCYQ+P LV T +VVSPL
Sbjct: 25 ATLENVFGYKGFRSHQSDIIRTMLGGGDCLALMPTGGGKSLCYQIPALVRPGTGIVVSPL 84
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQ---TDSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
I+LMQDQV +L+ G+ A FL S Q T ++ + G LL++ PE+ ++
Sbjct: 85 IALMQDQVDALRDLGVKAAFLNSTQDRATQDQIERQFAAGGLDLLYVAPER--LVQERTL 142
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+ L ++ + +FA+DEAHC+S+WGHDFR EY+QL L VP VALTATA E+ R DI
Sbjct: 143 NLLERSDIAIFAIDEAHCVSQWGHDFRPEYRQLKILAQRFPNVPRVALTATADERTRQDI 202
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
I+ L L+N IASFDR N+ Y + + G E + + ++S + IVYC++ K
Sbjct: 203 ISELSLENAATFIASFDRPNIRYTIAEL--GSVSSRERLWQFIESEHPTDAGIVYCLSRK 260
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
VEE + L G KA YH + + R A F+ ++ ++VAT+AFGMGIDKPDVR
Sbjct: 261 SVEETAAWLSSKGRKALAYHAGLDAHLRAAAQSKFLTEDGLIIVATIAFGMGIDKPDVRF 320
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYY 332
V H PK++ESYYQE+GR GRDG A+ W+ Y
Sbjct: 321 VAHLNLPKSIESYYQETGRAGRDGEAANAWMAY 353
>gi|126208588|ref|YP_001053813.1| ATP-dependent DNA helicase RecQ [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|303250135|ref|ZP_07336337.1| ATP-dependent DNA helicase RecQ [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307246031|ref|ZP_07528113.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307250372|ref|ZP_07532320.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|307252754|ref|ZP_07534645.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307255013|ref|ZP_07536831.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307257169|ref|ZP_07538941.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|307259449|ref|ZP_07541174.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|307261598|ref|ZP_07543266.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|126097380|gb|ABN74208.1| ATP-dependent DNA helicase RecQ [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|302651198|gb|EFL81352.1| ATP-dependent DNA helicase RecQ [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306852966|gb|EFM85189.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306857582|gb|EFM89690.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306859786|gb|EFM91808.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306861886|gb|EFM93862.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306864331|gb|EFM96242.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306866385|gb|EFM98248.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306868721|gb|EFN00530.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 602
Score = 293 bits (751), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 163/375 (43%), Positives = 219/375 (58%), Gaps = 14/375 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L FGY FR Q++VI ++ RDCLV+M TG GKSLCYQ+P L LV+SPLIS
Sbjct: 12 LNNVFGYQSFRHGQQEVIDSVLAGRDCLVIMTTGGGKSLCYQVPALCLDGITLVISPLIS 71
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L GI A FL S QT V+ KA +G +LL+++PEK ++ F+
Sbjct: 72 LMKDQVDQLLTNGIEAGFLNSTQTFEEQQLVEQKALSGQLKLLYLSPEK--VMTQGFFHF 129
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
+ + L AVDEAHC+S+WGHDFR EY L LR VP +ALTATA R DI+
Sbjct: 130 ISLCKISLIAVDEAHCVSQWGHDFRPEYTLLGNLRDTFPNVPLMALTATADPTTRHDILQ 189
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSF--VDELVQEILKSVAGAGSIIVYCMTIK 239
L+L +P+ + SFDR N+ Y V+ + F V++L + I K +G IVYC + K
Sbjct: 190 HLRLTDPHTYLGSFDRPNIRYTVQ-----EKFKPVEQLAKFISKQQGKSG--IVYCNSRK 242
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
VEEI++ L + YH M + RE F RD I+V+VAT+AFGMGI+K +VR
Sbjct: 243 KVEEITEKLASRKISVMGYHAGMSVQQRETVQNAFQRDNIQVVVATIAFGMGINKSNVRF 302
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V+H+ P+++ESYYQE+GR GRD + S L+Y +++A E QR
Sbjct: 303 VVHFDLPRSIESYYQETGRAGRDDLPSEAVLFYDPADYAWLQKVLLEEPESEQRDIKQHK 362
Query: 360 LLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 363 LQAIGAFAESQTCRR 377
>gi|402556977|ref|YP_006598248.1| ATP-dependent DNA helicase RecQ [Bacillus cereus FRI-35]
gi|401798187|gb|AFQ12046.1| ATP-dependent DNA helicase RecQ [Bacillus cereus FRI-35]
Length = 705
Score = 293 bits (751), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 225/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + I F +
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISSTEANQRIQLAKQGHYKLLYVAPER--LDSIEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N+L + + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 NTLGINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLMKAGVSVSKYHAGMSDNDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSACILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|165976542|ref|YP_001652135.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
gi|165876643|gb|ABY69691.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
Length = 602
Score = 293 bits (751), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 163/375 (43%), Positives = 219/375 (58%), Gaps = 14/375 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L FGY FR Q++VI ++ RDCLV+M TG GKSLCYQ+P L LV+SPLIS
Sbjct: 12 LNNVFGYQSFRHGQQEVIDSVLAGRDCLVIMTTGGGKSLCYQVPALCLDGITLVISPLIS 71
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L GI A FL S QT V+ KA +G +LL+++PEK ++ F+
Sbjct: 72 LMKDQVDQLLTNGIEAGFLNSTQTFEEQQLVEQKALSGQLKLLYLSPEK--VMTQGFFHF 129
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
+ + L AVDEAHC+S+WGHDFR EY L LR VP +ALTATA R DI+
Sbjct: 130 ISLCKISLIAVDEAHCVSQWGHDFRPEYTLLGNLRDTFPNVPLMALTATADPTTRHDILQ 189
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSF--VDELVQEILKSVAGAGSIIVYCMTIK 239
L+L +P+ + SFDR N+ Y V+ + F V++L + I K +G IVYC + K
Sbjct: 190 HLRLTDPHTYLGSFDRPNIRYTVQ-----EKFKPVEQLAKFISKQQGKSG--IVYCNSRK 242
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
VEEI++ L + YH M + RE F RD I+V+VAT+AFGMGI+K +VR
Sbjct: 243 KVEEITEKLASRKISVMGYHAGMSVQQRETVQNAFQRDNIQVVVATIAFGMGINKSNVRF 302
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V+H+ P+++ESYYQE+GR GRD + S L+Y +++A E QR
Sbjct: 303 VVHFDLPRSIESYYQETGRAGRDDLPSEAVLFYDPADYAWLQKVLLEEPESEQRDIKQHK 362
Query: 360 LLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 363 LQAIGAFAESQTCRR 377
>gi|365846070|ref|ZP_09386576.1| ATP-dependent DNA helicase RecQ [Yokenella regensburgei ATCC 43003]
gi|364574417|gb|EHM51877.1| ATP-dependent DNA helicase RecQ [Yokenella regensburgei ATCC 43003]
Length = 623
Score = 293 bits (751), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 158/375 (42%), Positives = 225/375 (60%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+ +I+ ++E RDCLVVM TG GKSLCYQ+P LV +VVSPLI
Sbjct: 30 VLQETFGYQQFRPGQETIIETVLEGRDCLVVMPTGGGKSLCYQIPALVLDGLTVVVSPLI 89
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S QT V TG +LL++ PE+ ++ +F
Sbjct: 90 SLMKDQVDQLLANGVAAACLNSTQTREQQQEVMAGCRTGKIRLLYIAPER--LMLDNFLD 147
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L + AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R+DI+
Sbjct: 148 NLSHWNPVMLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTTRLDIV 207
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 208 RLLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 262
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ AG YH + + R E F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 263 VEDTAARLQSRGISAGAYHAGLENHIRAEVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 322
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I
Sbjct: 323 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPAGQLLDIERHK 381
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 382 LNAMGAFAEAQTCRR 396
>gi|116329332|ref|YP_799052.1| DNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis str.
L550]
gi|116330064|ref|YP_799782.1| DNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis str.
JB197]
gi|116122076|gb|ABJ80119.1| DNA helicase, Superfamily II [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116123753|gb|ABJ75024.1| DNA helicase, Superfamily II [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
Length = 621
Score = 293 bits (750), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 165/382 (43%), Positives = 236/382 (61%), Gaps = 15/382 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKT-ALVV 59
+ S+LK+ +G S FR QK+ I+ ++ +D LV++ TG GKSL YQLP ++ + LV+
Sbjct: 12 LESSLKEIWGMSRFRIGQKESIESVLGGKDTLVILPTGGGKSLIYQLPAVLDRSSLTLVI 71
Query: 60 SPLISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPI 116
SPLI+LM+DQV SLK +GI AE+ S Q D + ++A TG ++L+++PEKA +
Sbjct: 72 SPLIALMKDQVDSLKAKGIAAEYCNSTQDDLEQLRILSRASTGKIRILYLSPEKA--LSR 129
Query: 117 SFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR-TFLLGVPFVALTATATEKV 175
+ L K +C AVDEAHC+S+WGHDFR EY++L +LR + +P VALTATAT +V
Sbjct: 130 QIFEILPKLPLCRIAVDEAHCVSQWGHDFRPEYRKLYELRDKYHHQIPIVALTATATPRV 189
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILK---SVAGAGSII 232
DI NSL LKNP + SF R+NL + V+ S +EL++ +++ +G I
Sbjct: 190 IQDIFNSLGLKNPTLIKGSFYRENLNFSVRFPQNETSKENELLKLLIRGNFQKTESGKAI 249
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
+YC T + VE I LK+ G K G YH +RE+ + + V+VAT AFGMG+
Sbjct: 250 IYCATRQKVESIYNFLKKNGFKVGKYHAGRTDSSREKTQNGYNIGKTNVLVATNAFGMGL 309
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ 352
D PDVR ++HY P +LESYYQE+GR GRDG +S C L+Y S+ +F G+ EN
Sbjct: 310 DNPDVRLIVHYQIPASLESYYQEAGRAGRDGKSSNCILFYHPSDLVTQNFIIGK---ENN 366
Query: 353 RTAIMESLLA-AQRYCLLTTCR 373
R E+LL+ + Y + CR
Sbjct: 367 RKG-GETLLSFVKEYAISNRCR 387
>gi|325579297|ref|ZP_08149253.1| ATP-dependent helicase RecQ [Haemophilus parainfluenzae ATCC 33392]
gi|325159532|gb|EGC71666.1| ATP-dependent helicase RecQ [Haemophilus parainfluenzae ATCC 33392]
Length = 621
Score = 293 bits (750), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 162/378 (42%), Positives = 227/378 (60%), Gaps = 14/378 (3%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
++TL+ FGY FR Q++VI + +D LVVMATG+GKSLCYQ+P L LV+SP
Sbjct: 19 LNTLRSVFGYQSFRKGQEEVIHAALSGQDALVVMATGNGKSLCYQIPALCFPGLTLVISP 78
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ GI A+FL S+QT V+ K +G +LL+++PEK ++ SF
Sbjct: 79 LISLMKDQVDQLQANGIEADFLNSSQTPEQQQQVENKLISGQLKLLYISPEK--VMTNSF 136
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + A + A+DEAHCIS+WGHDFR EY QL L+ P +ALTATA R D
Sbjct: 137 FQLISYAQISFIAIDEAHCISQWGHDFRPEYTQLGGLKAAFPNAPIMALTATADYATRQD 196
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSF--VDELVQEILKSVAGAGSIIVYCM 236
I+ LKL +P+ I SFDR N+ Y ++ + F +++L + +L +G IVYC
Sbjct: 197 ILTHLKLDHPHKYIGSFDRPNIRYTLE-----EKFKPMEQLTRFVLAQKGKSG--IVYCN 249
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ VE I++ L+ GV A YH M + RE + F RD I+V+VAT+AFGMGI+K +
Sbjct: 250 SRSKVERIAEILRNKGVSAAAYHAGMETALRECVQQDFQRDNIQVVVATIAFGMGINKSN 309
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR V H+ P+++ESYYQE+GR GRD + + L+Y +++A E QR
Sbjct: 310 VRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLEKPETPQRQIE 369
Query: 357 MESLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 370 QHKLEAIGEFAESQTCRR 387
>gi|148221|gb|AAA67618.1| DNA-dependent ATPase, DNA helicase [Escherichia coli str. K-12
substr. MG1655]
Length = 610
Score = 293 bits (750), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 157/374 (41%), Positives = 226/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + AL+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAAALQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|147559|gb|AAA24517.1| recQ [Escherichia coli]
Length = 610
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 157/374 (41%), Positives = 226/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + AL+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAAALQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|227114714|ref|ZP_03828370.1| ATP-dependent DNA helicase RecQ [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
gi|403060389|ref|YP_006648606.1| ATP-dependent DNA helicase RecQ [Pectobacterium carotovorum subsp.
carotovorum PCC21]
gi|402807715|gb|AFR05353.1| ATP-dependent DNA helicase RecQ [Pectobacterium carotovorum subsp.
carotovorum PCC21]
Length = 608
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 225/376 (59%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
V L+ FGY FRP Q+++I + +DCLV+M TG GKSLCYQ+P LV LVVSP
Sbjct: 14 VQVLRDTFGYQQFRPGQQEIISATLSGQDCLVIMPTGGGKSLCYQIPALVMDGLTLVVSP 73
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ G++A L S QT V TG +LL++ PE+ + SF
Sbjct: 74 LISLMKDQVDQLQAYGVSAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPER--LTTDSF 131
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
L + L AVDEAHCIS+WGHDFR EY+ L +++ +PF+ALTATA E R D
Sbjct: 132 LDHLAHWQIALIAVDEAHCISQWGHDFRPEYRALGQIKQRFPHLPFIALTATADETTRND 191
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L L++P + I+SFDR N+ Y ++ + + +D+L + +G I+YC +
Sbjct: 192 IVRLLDLQSPLIQISSFDRPNIRY--TLVEKFKP-LDQLWMFVQGQRGKSG--IIYCNSR 246
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE+I L+ G+ AG YH + ++ R + F+RD+++V+VAT+AFGMGI+KP+VR
Sbjct: 247 SRVEDICARLQARGLSAGAYHAGLDNERRAQVQEAFLRDDLQVVVATVAFGMGINKPNVR 306
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+H+ P+ +ESYYQE+GR GRDG+A+ L+Y ++ A E Q
Sbjct: 307 FVVHFDIPRNIESYYQETGRAGRDGLAAEAALFYDPADMAWLRRCLEEKPAGPQLDIERH 366
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 367 KLNAMGAFAEAQTCRR 382
>gi|332534725|ref|ZP_08410553.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas haloplanktis
ANT/505]
gi|332035812|gb|EGI72296.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas haloplanktis
ANT/505]
Length = 596
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 151/375 (40%), Positives = 230/375 (61%), Gaps = 10/375 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ LK+ FGYS FR QK VI I +D LV++ TG GKS+CYQ+P LV +V+SPL
Sbjct: 6 TVLKQVFGYSEFRDGQKAVIDAAINGQDSLVLLPTGGGKSVCYQIPALVLEGVTIVISPL 65
Query: 63 ISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLMQDQV L+ G+ A ++ ++ + V + G +LL++ PEK ++ F
Sbjct: 66 ISLMQDQVTQLQALGVKAAYVNNSLAREEQQLVYQQLHQGQIKLLYVAPEK--VLQREFL 123
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L V LFA+DEAHC+S WGHDFR Y +L++L+ VP +ALTATA + R DI
Sbjct: 124 ERLSHLNVSLFAIDEAHCVSHWGHDFRPHYFRLNELKQRFAHVPMMALTATADKATRFDI 183
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+ LKL+ PY+ SFDR N+ Y ++ + + V +L++ + + + +G I+YC + K
Sbjct: 184 VEQLKLQQPYIHTGSFDRPNIRYTIE--EKFKPMV-QLLRYLKEQKSQSG--IIYCTSRK 238
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V++I++ L G+ A YH M ++ R+ F RD+I+++VAT+AFGMGI+KP+VR
Sbjct: 239 RVDDIAEKLADAGLNAAAYHAGMSNEQRQFVQTGFARDDIQIVVATVAFGMGINKPNVRF 298
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V+HY PK++ESYYQE+GR GRDG+A+ +Y+ ++ + + + E +R +
Sbjct: 299 VLHYDIPKSIESYYQETGRAGRDGLAAEAIMYFDPADIGRVRRFFEDIDDEQRRRVEEQR 358
Query: 360 LLAAQRYCLLTTCRR 374
A + TCRR
Sbjct: 359 FNAMASFAEAQTCRR 373
>gi|373467701|ref|ZP_09558994.1| ATP-dependent DNA helicase RecQ [Haemophilus sp. oral taxon 851
str. F0397]
gi|371758043|gb|EHO46820.1| ATP-dependent DNA helicase RecQ [Haemophilus sp. oral taxon 851
str. F0397]
Length = 619
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 161/376 (42%), Positives = 224/376 (59%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+S LK FGY FR Q++VI + +D LVVMATG+GKSLCYQ+P L LV+SP
Sbjct: 17 LSVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFAGLTLVISP 76
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ GI A+FL S+QT VQ K +G +LL+++PEK ++ SF
Sbjct: 77 LISLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEK--VMTNSF 134
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + + V A+DEAHCIS+WGHDFR EY QL L+ P +ALTATA R D
Sbjct: 135 FQLISYSKVSFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPHAPIMALTATADYATRQD 194
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L L+NP+ I SFDR N+ Y + +++L + +L +G I+YC +
Sbjct: 195 ILTHLNLENPHRYIGSFDRPNIRY---TLEEKYKPMEQLTRFVLAQKGKSG--IIYCNSR 249
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I+++L+ GV A YH M + RE + F RD ++V+VAT+AFGMGI+K +VR
Sbjct: 250 NKVERIAESLRNKGVSAAAYHAGMETALRERVQQDFQRDNVQVVVATIAFGMGINKSNVR 309
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V H+ P+++ESYYQE+GR GRD + + L+Y +++A E QR
Sbjct: 310 FVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLEKPETPQRQIEQH 369
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 370 KLEAIGEFAESQTCRR 385
>gi|407692774|ref|YP_006817563.1| ATP-dependent DNA helicase RecQ [Actinobacillus suis H91-0380]
gi|407388831|gb|AFU19324.1| ATP-dependent DNA helicase RecQ [Actinobacillus suis H91-0380]
Length = 602
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 162/375 (43%), Positives = 219/375 (58%), Gaps = 14/375 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L FGY FR Q++VI ++ RDCLV+M TG GKSLCYQ+P L LV+SPLIS
Sbjct: 12 LNNVFGYQSFRHGQQEVIDSVLAGRDCLVIMTTGGGKSLCYQVPALCLDGITLVISPLIS 71
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L GI A FL S QT V+ KA +G +LL+++PEK ++ F+
Sbjct: 72 LMKDQVDQLLTNGIEAGFLNSTQTFEEQQDVEQKALSGQLKLLYLSPEK--VMTQGFFHF 129
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
+ + L AVDEAHC+S+WGHDFR EY L LR VP +ALTATA R DI+
Sbjct: 130 ISLCKISLIAVDEAHCVSQWGHDFRPEYTLLGNLRNTFPNVPLMALTATADPTTRHDILQ 189
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSF--VDELVQEILKSVAGAGSIIVYCMTIK 239
L+L +P+ + SFDR N+ Y V+ + F +++L + I K +G IVYC + K
Sbjct: 190 HLRLTDPHTYLGSFDRPNIRYTVQ-----EKFKPMEQLAKFIGKQQGKSG--IVYCNSRK 242
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
VEEI++ L + YH M + RE F RD I+V+VAT+AFGMGI+K +VR
Sbjct: 243 KVEEITEKLATRKISVMGYHAGMSVQQRETVQNAFQRDNIQVVVATIAFGMGINKSNVRF 302
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V+H+ P+++ESYYQE+GR GRD + S L+Y +++A E QR
Sbjct: 303 VVHFDLPRSIESYYQETGRAGRDDLPSEAVLFYDPADYAWLQKVLLEEPESEQRDIKQHK 362
Query: 360 LLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 363 LQAIGAFAESQTCRR 377
>gi|37528437|ref|NP_931782.1| ATP-dependent DNA helicase RecQ [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36787875|emb|CAE16992.1| ATP-dependent DNA helicase RecQ [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 608
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 161/374 (43%), Positives = 223/374 (59%), Gaps = 10/374 (2%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L+K FGY FR Q+ VI I+E RDCLV+M TG GKSLCYQ+P LV LVVSPLI
Sbjct: 16 VLRKTFGYLQFRSGQQQVIDTILEGRDCLVIMPTGGGKSLCYQIPALVQEGVTLVVSPLI 75
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L+ G+ A+ L S Q V + G +LL++ PE+ ++ +F
Sbjct: 76 SLMKDQVDQLRANGVAADCLNSTQAREQQIDVIRRCRQGMIKLLYIAPER--LMMDNFLE 133
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
+LL+ + AVDEAHCIS+WGHDFR EY+ L +LR +P +ALTATA E R DI+
Sbjct: 134 QLLEWQPAMLAVDEAHCISQWGHDFRPEYRALGQLRQRFPTLPVIALTATADETTRNDIV 193
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L NP + I+SFDR N+ Y +I + + +D+L I +G IVYC +
Sbjct: 194 RLLNLNNPLIHISSFDRPNIRY--TLIEKYKP-LDQLWLFIRGQKGKSG--IVYCNSRSR 248
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VEEIS+ L++ G+ YH + + R F RD+++V+VAT+AFGMGI+KP+VR V
Sbjct: 249 VEEISERLQKRGLSVAPYHAGLDNSQRARVQDAFQRDDLQVVVATVAFGMGINKPNVRFV 308
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ E + Q+ L
Sbjct: 309 VHFNIPRNIESYYQETGRAGRDGLPAEAVLFYDPADMVWLRRCLEEKEVGTQQDIERHKL 368
Query: 361 LAAQRYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|373955135|ref|ZP_09615095.1| ATP-dependent DNA helicase RecQ [Mucilaginibacter paludis DSM
18603]
gi|373891735|gb|EHQ27632.1| ATP-dependent DNA helicase RecQ [Mucilaginibacter paludis DSM
18603]
Length = 713
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 148/373 (39%), Positives = 225/373 (60%), Gaps = 8/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L KYFGY FR Q+ ++ ++ ++D +V+M TG GKS+CYQLP ++ +V+SPLI+
Sbjct: 7 LHKYFGYREFRHEQEAIVDHVLNQKDAMVLMPTGGGKSICYQLPAVIFDGLTVVISPLIA 66
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L GINA FL S+Q+D+ + + + +LL++ PE+
Sbjct: 67 LMKDQVDALNINGINAAFLNSSQSDNEQREIIKQLKANQIKLLYLAPERLFSSESRLIDF 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L V L A+DEAHCIS WGHDFR EY L L+ +P +ALTATA + R DI++
Sbjct: 127 LKTLKVSLIAIDEAHCISHWGHDFRPEYLMLAGLKIAFPNIPVIALTATADKITRKDILD 186
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L P ++SFDRKN+ Y ++ + SF +L+ + + +G I+YC++ +
Sbjct: 187 KLNLNQPREFVSSFDRKNINY--RIAPKKNSFT-QLIAFLKEHQDDSG--IIYCLSRQST 241
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+++ AL+ G A YH + K +++ F+RDEI+++VAT+AFGMGI+K +VR V+
Sbjct: 242 EDLATALQAQGYSAQAYHAGLEKKIKDQNQERFLRDEIKIIVATIAFGMGINKSNVRFVV 301
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H PK +E YYQE+GR GRDG+ S L+Y+ ++ K + E Q +++ L
Sbjct: 302 HMDLPKNIEGYYQETGRAGRDGLPSKALLFYSYADVQKLQSFARVEGNEAQSKIMLKKLD 361
Query: 362 AAQRYCLLTTCRR 374
R+C L TCRR
Sbjct: 362 DMVRFCQLQTCRR 374
>gi|410995826|gb|AFV97291.1| hypothetical protein B649_04885 [uncultured Sulfuricurvum sp.
RIFRC-1]
Length = 602
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 161/372 (43%), Positives = 225/372 (60%), Gaps = 9/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK FG+S FR Q+D + I+ +RD +++ TG GKSLCYQLP L+ +VVSPLI+
Sbjct: 12 LKHTFGFSSFREMQEDAVDAILSRRDLAMLLPTGGGKSLCYQLPTLLMDGITIVVSPLIA 71
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQ---TKAETGYFQLLFMTPEKACIIPISFWSK 121
LM DQV++LK+ GI AE + S+Q+ Q +KA+ G +LL++ PE+ + +SF S
Sbjct: 72 LMHDQVIALKELGIEAEMISSSQSPQEQQEAFSKAKNGVLKLLYIAPER--LANVSFLSW 129
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + F +DEAHCISEWGH+FR +Y++L +LR+ P A TATAT KVR DI++
Sbjct: 130 LETLDINFFVIDEAHCISEWGHEFRDDYRRLGELRSAFPHTPIAAFTATATPKVREDILS 189
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + A RKN+ + V R + +EL+ ILK G S IVY + K+
Sbjct: 190 QLGLNDPLILRAPVLRKNI--KITVRERDGGWRNELMN-ILKEHEGE-SGIVYAFSRKET 245
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
EE+++ L + G+K YH M R + H F+ DE +++VAT+AFGMGIDK D+R VI
Sbjct: 246 EELAEFLSKKGIKCLAYHAGMSGSIRHDTHTSFLNDETQIIVATVAFGMGIDKGDIRFVI 305
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H PKT+E+YYQE GR GRDGI S L+Y+ ++F E R I+ L
Sbjct: 306 HTSLPKTIENYYQEIGRAGRDGIDSEAILFYSGTDFYNKKRLIDEGSDPQYREMILSKLR 365
Query: 362 AAQRYCLLTTCR 373
A+ Y CR
Sbjct: 366 ASMDYATAEECR 377
>gi|228953148|ref|ZP_04115207.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|229080004|ref|ZP_04212535.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock4-2]
gi|229151025|ref|ZP_04279236.1| ATP-dependent DNA helicase RecQ [Bacillus cereus m1550]
gi|423424939|ref|ZP_17401970.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG3X2-2]
gi|423436318|ref|ZP_17413299.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG4X12-1]
gi|423506474|ref|ZP_17483064.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HD73]
gi|449089824|ref|YP_007422265.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|228632585|gb|EEK89203.1| ATP-dependent DNA helicase RecQ [Bacillus cereus m1550]
gi|228703383|gb|EEL55838.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock4-2]
gi|228806563|gb|EEM53123.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|401113711|gb|EJQ21580.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG3X2-2]
gi|401122932|gb|EJQ30716.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG4X12-1]
gi|402447915|gb|EJV79764.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HD73]
gi|449023581|gb|AGE78744.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 705
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 227/373 (60%), Gaps = 13/373 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGS----AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
LM+DQV +L Q GI+A ++ S A+ + +Q A+ G+++LL++ PE+ + + F
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISIAEANQRIQL-AKQGHYKLLYVAPER--LDSMEFVD 125
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDI 179
+L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 126 QLIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDI 185
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
N+L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 186 CNTLEINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRK 240
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+
Sbjct: 241 VVDQLYEDLMKAGVSVSKYHAGMSDSDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRY 300
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E
Sbjct: 301 VIHYQLPKNMESYYQEAGRAGRDGLDSTCILLYSSQDVQVQRFLIDQSTGESRFSNELEK 360
Query: 360 LLAAQRYCLLTTC 372
L YC C
Sbjct: 361 LQNMTDYCHTEQC 373
>gi|423384359|ref|ZP_17361615.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG1X1-2]
gi|423529268|ref|ZP_17505713.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuB1-1]
gi|401640260|gb|EJS57992.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG1X1-2]
gi|402448697|gb|EJV80536.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuB1-1]
Length = 705
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 227/373 (60%), Gaps = 13/373 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGS----AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
LM+DQV +L Q GI+A ++ S A+ + +Q A+ G+++LL++ PE+ + + F
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISIAEANQRIQL-AKQGHYKLLYVAPER--LDSMEFVD 125
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDI 179
+L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 126 QLIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDI 185
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
N+L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 186 CNTLEINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRK 240
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+
Sbjct: 241 VVDQLYEDLMKAGVSVSKYHAGMSDSDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRY 300
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E
Sbjct: 301 VIHYQLPKNMESYYQEAGRAGRDGLDSTCILLYSSQDVQVQRFLIDQSTGESRFSNELEK 360
Query: 360 LLAAQRYCLLTTC 372
L YC C
Sbjct: 361 LQNMTDYCHTEQC 373
>gi|30020934|ref|NP_832565.1| ATP-dependent DNA helicase recQ [Bacillus cereus ATCC 14579]
gi|229128155|ref|ZP_04257137.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BDRD-Cer4]
gi|29896487|gb|AAP09766.1| ATP-dependent DNA helicase recQ [Bacillus cereus ATCC 14579]
gi|228655430|gb|EEL11286.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BDRD-Cer4]
Length = 705
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 227/373 (60%), Gaps = 13/373 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGS----AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
LM+DQV +L Q GI+A ++ S A+ + +Q A+ G+++LL++ PE+ + + F
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISIAEANQRIQL-AKQGHYKLLYVAPER--LDSMEFVD 125
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDI 179
+L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 126 QLIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDI 185
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
N+L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 186 CNTLEINKENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRK 240
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+
Sbjct: 241 VVDQLYEDLMKAGVSVSKYHAGMSDSDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRY 300
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E
Sbjct: 301 VIHYQLPKNMESYYQEAGRAGRDGLDSTCILLYSSQDVQVQRFLIDQSTGESRFSNELEK 360
Query: 360 LLAAQRYCLLTTC 372
L YC C
Sbjct: 361 LQNMTDYCHTEQC 373
>gi|342905065|ref|ZP_08726857.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M21621]
gi|341951895|gb|EGT78444.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M21621]
Length = 619
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 160/376 (42%), Positives = 225/376 (59%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+S LK FGY FR Q++VI + +D LVVMATG+GKSLCYQ+P L LV+SP
Sbjct: 17 LSVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFEGLTLVISP 76
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ GI A+FL S+QT VQ K +G +LL+++PEK ++ SF
Sbjct: 77 LISLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEK--VMTNSF 134
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + + V A+DEAHCIS+WGHDFR EY QL L+ P +ALTATA R D
Sbjct: 135 FQLISYSKVSFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPHAPIMALTATADYATRQD 194
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L L+NP+ I SFDR N+ Y + +++L + +L +G I+YC +
Sbjct: 195 ILTHLNLENPHKYIGSFDRPNIRY---TLEEKYKPMEQLTRFVLAQKGKSG--IIYCNSR 249
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I+++L+ G+ A YH M + RE + F RD ++V+VAT+AFGMGI+K +VR
Sbjct: 250 NKVERIAESLRNKGISAAAYHAGMETALRERVQQDFQRDNVQVVVATIAFGMGINKSNVR 309
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V H+ P+++ESYYQE+GR GRD + + L+Y +++A E +QR
Sbjct: 310 FVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLEKPETSQRQIEQH 369
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 370 KLEAIGEFAESQTCRR 385
>gi|227325786|ref|ZP_03829810.1| ATP-dependent DNA helicase RecQ [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 609
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 225/376 (59%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
V L+ FGY FRP Q+++I + +DCLV+M TG GKSLCYQ+P LV LVVSP
Sbjct: 14 VQVLRDTFGYQQFRPGQQEIISATLSGQDCLVIMPTGGGKSLCYQIPALVMDGLTLVVSP 73
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ G++A L S QT V TG +LL++ PE+ + SF
Sbjct: 74 LISLMKDQVDQLQAYGVSAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPER--LTTDSF 131
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
L + L AVDEAHCIS+WGHDFR EY+ L +++ +PF+ALTATA E R D
Sbjct: 132 LDHLAHWQISLIAVDEAHCISQWGHDFRPEYRALGQIKQRFPHLPFIALTATADETTRND 191
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L L++P + I+SFDR N+ Y ++ + + +D+L + +G I+YC +
Sbjct: 192 IVRLLDLQSPLIQISSFDRPNIRY--TLVEKFKP-LDQLWMFVQGQRGKSG--IIYCNSR 246
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE+I L+ G+ AG YH + ++ R + F+RD+++V+VAT+AFGMGI+KP+VR
Sbjct: 247 SRVEDICARLQARGLSAGAYHAGLDNERRAQVQEAFLRDDLQVVVATVAFGMGINKPNVR 306
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+H+ P+ +ESYYQE+GR GRDG+A+ L+Y ++ A E Q
Sbjct: 307 FVVHFDIPRNIESYYQETGRAGRDGLAAEAALFYDPADMAWLRRCLEEKPAGPQLDIERH 366
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 367 KLNAMGAFAEAQTCRR 382
>gi|110597180|ref|ZP_01385469.1| ATP-dependent DNA helicase, RecQ family:ATP-dependent DNA helicase
RecQ [Chlorobium ferrooxidans DSM 13031]
gi|110341371|gb|EAT59836.1| ATP-dependent DNA helicase, RecQ family:ATP-dependent DNA helicase
RecQ [Chlorobium ferrooxidans DSM 13031]
Length = 597
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 151/373 (40%), Positives = 218/373 (58%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
++K FG+ FRP Q+ +++ I+EKRD VM TG GKSLCYQLP ++ T +V+SPLI+
Sbjct: 1 MRKVFGFREFRPNQEKIVRAILEKRDVFAVMPTGGGKSLCYQLPAVLLPGTCMVISPLIA 60
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV + GI A FL S+Q SV + + LL++ PE+ F
Sbjct: 61 LMKDQVDGARANGIRAAFLNSSQLPEERESVMRELLSNSLDLLYVAPERFTFD--HFREL 118
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + + +DEAHC+SEWGHDFR +Y L L + +P A TATAT +V+ DI++
Sbjct: 119 LGRVNISMAVIDEAHCVSEWGHDFRPDYLSLSALVSLFPDLPVSAFTATATHRVQQDILD 178
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
+ L+NP + ASFDR NLFY V+ + D + ILK+ G II Y + K V
Sbjct: 179 RIALRNPLIVRASFDRPNLFYDVRFKEKP----DAQIVAILKANKGKAGII-YRTSRKSV 233
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
+ + L+ G +A YH + R+ FIRDE+ V+VAT+AFGMGIDK ++R VI
Sbjct: 234 NDTAAMLQARGFRALPYHAGLSDDERKRNQEAFIRDEVEVIVATIAFGMGIDKSNIRFVI 293
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H PK++E+YYQE+GR GRDG + C L +A+ + K F+ E +R +++L
Sbjct: 294 HADLPKSIENYYQETGRAGRDGEPAHCTLLFAQGDIPKVRFFIDSMLDETERARALDALT 353
Query: 362 AAQRYCLLTTCRR 374
+ + CRR
Sbjct: 354 RVTSFASTSVCRR 366
>gi|193212332|ref|YP_001998285.1| ATP-dependent DNA helicase RecQ [Chlorobaculum parvum NCIB 8327]
gi|193085809|gb|ACF11085.1| ATP-dependent DNA helicase RecQ [Chlorobaculum parvum NCIB 8327]
Length = 609
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 162/377 (42%), Positives = 230/377 (61%), Gaps = 14/377 (3%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
L + FG+ FRP Q+++++ ++ RD VM TG GKSLCYQLP ++ TALVVSPL
Sbjct: 15 DALHRIFGFHSFRPNQEEIVRALMGGRDVFAVMPTGGGKSLCYQLPAVLMPGTALVVSPL 74
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQ--TD-SSVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLM+DQV + + GI A FL S+ TD S+V ++G LL++ PE+ + +
Sbjct: 75 ISLMKDQVDAARLNGIKAAFLNSSLDFTDQSAVLRSLQSGDLDLLYVAPER---FALDQF 131
Query: 120 SKLLKAGVCL--FAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
+LL AG C+ +DEAHCISEWGHDFR +Y L L L VP A TATAT+KV+
Sbjct: 132 RELL-AGCCISIAVIDEAHCISEWGHDFRPDYLSLSSLVELLPDVPVAAFTATATQKVQR 190
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI++ L L++P+V ASFDR NL Y V+ G+S + L+ E S I+Y +
Sbjct: 191 DIVSKLGLRDPFVLRASFDRPNLTYEVRFKEAGESQLVSLLNEF-----SGQSGIIYRTS 245
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K V + + L++ G++A YH + + R + FIRDE+ V+VAT+AFGMGIDK +V
Sbjct: 246 RKSVNDTAAMLQKRGIRALPYHAGLADRERHDNQEAFIRDEVDVIVATVAFGMGIDKSNV 305
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIH PK++ESYYQE+GR GRDG S C + ++ ++ K F+ E++R +
Sbjct: 306 RFVIHADLPKSIESYYQETGRAGRDGENSRCIMLFSHADIPKVRFFIDAMLDEDERRRAL 365
Query: 358 ESLLAAQRYCLLTTCRR 374
++L + T CRR
Sbjct: 366 DALSKVVAFASSTVCRR 382
>gi|229145390|ref|ZP_04273778.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BDRD-ST24]
gi|228638062|gb|EEK94504.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BDRD-ST24]
Length = 705
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 227/373 (60%), Gaps = 13/373 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGS----AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
LM+DQV +L Q GI+A ++ S A+ + +Q A+ G+++LL++ PE+ + + F
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISIAEANQRIQL-AKQGHYKLLYVAPER--LDSMEFVD 125
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDI 179
+L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 126 QLIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDI 185
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
N+L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 186 CNTLEINKENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRK 240
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+
Sbjct: 241 VVDQLYQDLMKAGVSVSKYHAGMSDSDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRY 300
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E
Sbjct: 301 VIHYQLPKNMESYYQEAGRAGRDGLDSTCILLYSSQDVQVQRFLIDQSTGESRFSNELEK 360
Query: 360 LLAAQRYCLLTTC 372
L YC C
Sbjct: 361 LQNMTDYCHTEQC 373
>gi|296503352|ref|YP_003665052.1| ATP-dependent DNA helicase recQ [Bacillus thuringiensis BMB171]
gi|296324404|gb|ADH07332.1| ATP-dependent DNA helicase recQ [Bacillus thuringiensis BMB171]
Length = 705
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 227/373 (60%), Gaps = 13/373 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGS----AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
LM+DQV +L Q GI+A ++ S A+ + +Q A+ G+++LL++ PE+ + + F
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISIAEANQRIQL-AKQGHYKLLYVAPER--LDSMEFVD 125
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDI 179
+L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 126 QLIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDI 185
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
N+L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 186 CNTLEINKENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRK 240
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+
Sbjct: 241 VVDQLYQDLMKAGVSVSKYHAGMSDSDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRY 300
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E
Sbjct: 301 VIHYQLPKNMESYYQEAGRAGRDGLDSTCILLYSSQDVQVQRFLIDQSTGESRFSNELEK 360
Query: 360 LLAAQRYCLLTTC 372
L YC C
Sbjct: 361 LQNMTDYCHTEQC 373
>gi|389795781|ref|ZP_10198890.1| ATP-dependent DNA helicase RecQ [Rhodanobacter fulvus Jip2]
gi|388430112|gb|EIL87306.1| ATP-dependent DNA helicase RecQ [Rhodanobacter fulvus Jip2]
Length = 605
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 156/377 (41%), Positives = 231/377 (61%), Gaps = 17/377 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FR Q+ V++ + E D LV+M TG GKSLCYQ+P L+ T +VVSPLI+
Sbjct: 9 LQSVFGYPSFRGQQQAVVEHLGEGGDALVLMPTGGGKSLCYQVPALLRQGTGIVVSPLIA 68
Query: 65 LMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV +L++ G+ A FL S A V+ + E G LL++ PE+ ++ F ++
Sbjct: 69 LMQDQVDALREAGVAAAFLNSSLAAGEQREVERQLEAGELNLLYVAPER--LLTGRFLAQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + V LFA+DEAHC+S+WGHDFR EY++L L+ VP +ALTATA + R +I+
Sbjct: 127 LERTEVALFAIDEAHCVSQWGHDFRPEYRELAILQERFPQVPRIALTATADPRTREEIVE 186
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L+N ++SFDR N+ Y V + + + + E +L +G IVYC++ + V
Sbjct: 187 RLSLQNARQFVSSFDRPNIGYRVGLRHNAKRQLGEF---LLGHQGESG--IVYCLSRRKV 241
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
++ + L + GV+A YH + + R + + F+R++ VMVAT+AFGMGIDKPDVR V
Sbjct: 242 DDTAAWLAESGVEALPYHAGLDAATRAKNQKRFLREDGVVMVATVAFGMGIDKPDVRFVA 301
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI----M 357
H P+++E YYQE+GR GRDG+ + W+ Y S+ +S++ ++R + +
Sbjct: 302 HLDLPRSIEGYYQETGRAGRDGLPAEAWMIYGLSDVVTMSQMIAQSESADERKRVERQKL 361
Query: 358 ESLLAAQRYCLLTTCRR 374
ESLLA Y T CRR
Sbjct: 362 ESLLA---YAEATDCRR 375
>gi|228939936|ref|ZP_04102512.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228972828|ref|ZP_04133425.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228979410|ref|ZP_04139744.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis Bt407]
gi|384186880|ref|YP_005572776.1| ATP-dependent DNA helicase recQ [Bacillus thuringiensis serovar
chinensis CT-43]
gi|410675184|ref|YP_006927555.1| putative ATP-dependent DNA helicase RecQ [Bacillus thuringiensis
Bt407]
gi|452199240|ref|YP_007479321.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228780310|gb|EEM28543.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis Bt407]
gi|228786879|gb|EEM34861.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228819727|gb|EEM65776.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|326940589|gb|AEA16485.1| ATP-dependent DNA helicase recQ [Bacillus thuringiensis serovar
chinensis CT-43]
gi|409174313|gb|AFV18618.1| putative ATP-dependent DNA helicase RecQ [Bacillus thuringiensis
Bt407]
gi|452104633|gb|AGG01573.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 705
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 227/373 (60%), Gaps = 13/373 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGS----AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
LM+DQV +L Q GI+A ++ S A+ + +Q A+ G+++LL++ PE+ + + F
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISIAEANQRIQL-AKQGHYKLLYVAPER--LDSMEFVD 125
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDI 179
+L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 126 QLIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVREDI 185
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
N+L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 186 CNTLEINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRK 240
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+
Sbjct: 241 VVDQLYEDLMKAGVSVSKYHAGMSDSDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRY 300
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E
Sbjct: 301 VIHYQLPKNMESYYQEAGRAGRDGLDSTCILLYSSQDVQVQRFLIDQSTGESRFSNELEK 360
Query: 360 LLAAQRYCLLTTC 372
L YC C
Sbjct: 361 LQNMTDYCHTEQC 373
>gi|229046514|ref|ZP_04192169.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH676]
gi|228724876|gb|EEL76178.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH676]
Length = 705
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 227/373 (60%), Gaps = 13/373 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGS----AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
LM+DQV +L Q GI+A ++ S A+ + +Q A+ G+++LL++ PE+ + + F
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISIAEANQRIQL-AKQGHYKLLYVAPER--LDSMEFVD 125
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDI 179
+L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 126 QLIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDI 185
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
N+L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 186 CNTLEINKENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRK 240
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+
Sbjct: 241 VVDQLYEDLMKAGVSVSKYHAGMSDSDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRY 300
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E
Sbjct: 301 VIHYQLPKNMESYYQEAGRAGRDGLDSTCILLYSSQDVQVQRFLIDQSTGESRFSNELEK 360
Query: 360 LLAAQRYCLLTTC 372
L YC C
Sbjct: 361 LQNMTDYCHTEQC 373
>gi|392309341|ref|ZP_10271875.1| ATP-dependent DNA helicase [Pseudoalteromonas citrea NCIMB 1889]
Length = 603
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 156/375 (41%), Positives = 229/375 (61%), Gaps = 10/375 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
S LK FGYS FR QK VI + ++D LV++ TG GKSLCYQ+P LV +VVSPL
Sbjct: 13 SVLKNIFGYSEFRDGQKAVIDAALARQDSLVLLPTGGGKSLCYQVPALVLDGITVVVSPL 72
Query: 63 ISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLMQDQV L+ G++AEF+ ++ + ++ + G +LL++ PEK I+ F
Sbjct: 73 ISLMQDQVAQLQALGVSAEFINNSVPREQQHAIYQRVHDGDVKLLYVAPEK--ILQYEFI 130
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L V LFA+DEAHC+S WGHDFR Y +L +L+ +P +ALTATA R DI
Sbjct: 131 ERLHHLPVSLFAIDEAHCVSHWGHDFRPHYCRLSELKQHFPAIPMMALTATADTATRYDI 190
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+N L L+NPY+ SFDR N+ Y ++ + S +L++ + + +G I+YC + K
Sbjct: 191 VNQLSLQNPYIHTGSFDRPNIRYTIEEKFKPLS---QLMRYLKEQQNQSG--IIYCTSRK 245
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+EIS+ L G A YH M ++ R+ F RD+I ++VAT+AFGMGI+KP+VR
Sbjct: 246 RVDEISEKLADAGFNAAAYHAGMSNEQRQFVQSAFARDDIHIVVATVAFGMGINKPNVRF 305
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V+HY PK++E+YYQE+GR GRDG+A+ +Y+ ++ + + + + E +R +
Sbjct: 306 VLHYDIPKSIEAYYQETGRAGRDGLAAEAIMYFDPADIGRVKRFFEDIEDEQRRRVEEQR 365
Query: 360 LLAAQRYCLLTTCRR 374
A + TCRR
Sbjct: 366 FNAMASFAEAQTCRR 380
>gi|377579442|ref|ZP_09808410.1| ATP-dependent DNA helicase RecQ [Escherichia hermannii NBRC 105704]
gi|377539235|dbj|GAB53575.1| ATP-dependent DNA helicase RecQ [Escherichia hermannii NBRC 105704]
Length = 609
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 158/374 (42%), Positives = 224/374 (59%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+ +I +++ RDCLVVM TG GKSLCYQ+P LV +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQETIINTVLDGRDCLVVMPTGGGKSLCYQIPALVKAGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S QT +V TG +LL++ PE+ ++ +F +
Sbjct: 77 LMKDQVDQLLANGVAAACLNSTQTRDEQQAVMAGCRTGKIRLLYIAPER--LMLDNFLDQ 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L+ + AVDEAHCIS+WGHDFR EY L +LR VPF+ALTATA E R DI+N
Sbjct: 135 LIHWNPVMLAVDEAHCISQWGHDFRREYALLGQLRDRFPDVPFMALTATADETTRRDIVN 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + +G I+YC + V
Sbjct: 195 LLGLHDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQDQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSRGISAAAYHAGLENDVRANVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPPGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|303253309|ref|ZP_07339458.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|307248139|ref|ZP_07530167.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|302647991|gb|EFL78198.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|306855316|gb|EFM87491.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
Length = 602
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 163/375 (43%), Positives = 219/375 (58%), Gaps = 14/375 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L FGY FR Q++VI ++ RDCLV+M TG GKSLCYQ+P L LVVSPLIS
Sbjct: 12 LNNVFGYQSFRHGQQEVIDSVLAGRDCLVIMTTGGGKSLCYQVPALCLDGITLVVSPLIS 71
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L GI A FL S QT V+ KA +G +LL+++PEK ++ F+
Sbjct: 72 LMKDQVDQLLTNGIEAGFLNSTQTFEEQRLVEQKALSGQLKLLYLSPEK--VMTQGFFHF 129
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
+ + L AVDEAHC+S+WGHDFR EY L LR VP +ALTATA R DI+
Sbjct: 130 ISLCKISLIAVDEAHCVSQWGHDFRPEYTLLGNLRDTFPNVPLMALTATADPTTRHDILQ 189
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSF--VDELVQEILKSVAGAGSIIVYCMTIK 239
L+L +P+ + SFDR N+ Y V+ + F +++L + I K +G IVYC + K
Sbjct: 190 HLRLTDPHTYLGSFDRPNIRYTVQ-----EKFKPMEQLAKFISKQQGKSG--IVYCNSRK 242
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
VEEI++ L + YH M + RE F RD I+V+VAT+AFGMGI+K +VR
Sbjct: 243 KVEEITEKLASRKISVMGYHAGMSVQQRETVQNAFQRDNIQVVVATIAFGMGINKSNVRF 302
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V+H+ P+++ESYYQE+GR GRD + S L+Y +++A E QR
Sbjct: 303 VVHFDLPRSIESYYQETGRAGRDDLPSEAVLFYDPADYAWLQKVLLEEPESEQRDIKQHK 362
Query: 360 LLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 363 LQAIGAFAESQTCRR 377
>gi|228908560|ref|ZP_04072400.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis IBL 200]
gi|228851113|gb|EEM95927.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis IBL 200]
Length = 705
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 227/373 (60%), Gaps = 13/373 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGS----AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
LM+DQV +L Q GI+A ++ S A+ + +Q A+ G+++LL++ PE+ + + F
Sbjct: 69 LMKDQVDTLLQNGISATYINSSISIAEANQRIQL-AKQGHYKLLYVAPER--LDSMEFVD 125
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDI 179
+L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 126 QLIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVREDI 185
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
N+L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 186 CNTLEINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRK 240
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+
Sbjct: 241 VVDQLYEDLMKAGVSVSKYHAGMSDSDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRY 300
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E
Sbjct: 301 VIHYQLPKNMESYYQEAGRAGRDGLDSTCILLYSSQDVQVQRFLIDQSTGESRFSNELEK 360
Query: 360 LLAAQRYCLLTTC 372
L YC C
Sbjct: 361 LQNMTDYCHTEQC 373
>gi|87308100|ref|ZP_01090242.1| ATP-dependent DNA helicase RecQ [Blastopirellula marina DSM 3645]
gi|87289182|gb|EAQ81074.1| ATP-dependent DNA helicase RecQ [Blastopirellula marina DSM 3645]
Length = 736
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 163/376 (43%), Positives = 224/376 (59%), Gaps = 11/376 (2%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ST+++Y+GY FRP Q++ +Q +++ RD +VVM TG GKSLCYQ+P L A+V S
Sbjct: 12 LLSTMQQYWGYEGFRPLQQEAMQAVLDDRDSVVVMPTGGGKSLCYQVPALCKPGLAVVAS 71
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQT-DSSVQTKAE--TGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L GI A + S T D Q A+ +G ++L++ PE+ ++
Sbjct: 72 PLISLMKDQVDALTACGIQAACINSTITADERRQIAADIRSGSMRVLYLAPER--LLSER 129
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
L A V FA+DE+HCISEWGHDFR EY+ + L+ GV A TATATE VR+
Sbjct: 130 MLDFLAGADVSFFAIDESHCISEWGHDFRPEYRMMKTLKESFPGVGVHAYTATATETVRL 189
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI L L +P + SFDR NL Y +++ R +QE++ S IVYC+
Sbjct: 190 DIAQQLGLVDPEFLVGSFDRPNLNY--RILRRADRLAQ--IQEVIARHPNE-SGIVYCIR 244
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
DVE I++ L GVKA YH + R++ FI++ V+VAT+AFGMGIDK +V
Sbjct: 245 RADVEAIAEQLNAAGVKALPYHAGLSDVQRQQHQEAFIQERTDVIVATVAFGMGIDKSNV 304
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R+VIH G PK+LESY QESGR GRDG+ + C L Y+ + G+ Q+ A M
Sbjct: 305 RYVIHAGMPKSLESYQQESGRGGRDGLEAECVLLYSSGDLVTWKRMLGDLPDAAQQAA-M 363
Query: 358 ESLLAAQRYCLLTTCR 373
SL A +C CR
Sbjct: 364 RSLDALDHFCTGAECR 379
>gi|85858064|ref|YP_460266.1| superfamily II DNA helicase [Syntrophus aciditrophicus SB]
gi|85721155|gb|ABC76098.1| superfamily II DNA helicase [Syntrophus aciditrophicus SB]
Length = 619
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 153/376 (40%), Positives = 223/376 (59%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ +LKK FGY FR +Q++++ +I D V+M TG GKSLCYQLP L +VVSP
Sbjct: 6 LESLKKIFGYDAFRLHQQEIVDGLIRGEDAFVLMPTGGGKSLCYQLPALHRPGVGIVVSP 65
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV SLK G+ A F S+ + + V + G L+++ PE+ ++ F
Sbjct: 66 LISLMKDQVDSLKAYGVKAAFYNSSLSGTEARKVLARLHGGKLDLIYIAPER--LMSREF 123
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+L + LFA+DEAHCIS+WGHDFR EY+QL +LR +P +ALTATA R D
Sbjct: 124 LERLNDIPIALFAIDEAHCISQWGHDFRPEYRQLGRLRGLFPEIPLIALTATAEAHTRRD 183
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L L+ I+ FDR N+ Y V+ + + F +L + G G IVYC++
Sbjct: 184 ILERLGLRQARSYISGFDRPNIRY--TVLEKRKPFA-QLTTFLQPRYKGTG--IVYCLSR 238
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
+ VE+++ AL + G +A YH + + AR++ F+RD+IR++VAT+AFGMGIDK ++R
Sbjct: 239 QRVEKVAGALTEAGFQAAPYHAGLPAGARKQVQEDFLRDDIRIIVATVAFGMGIDKSNIR 298
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+HY PK +ESYYQE+GR GRDG+ + L + + + S+ +R +
Sbjct: 299 WVVHYDIPKNIESYYQETGRAGRDGLPAEALLLFGYGDISLARGLIENSKNPERRRIELH 358
Query: 359 SLLAAQRYCLLTTCRR 374
L A Y +CRR
Sbjct: 359 KLNAMVGYAEALSCRR 374
>gi|359454206|ref|ZP_09243496.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20495]
gi|414070221|ref|ZP_11406208.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. Bsw20308]
gi|358048729|dbj|GAA79745.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20495]
gi|410807319|gb|EKS13298.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. Bsw20308]
Length = 607
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 151/375 (40%), Positives = 228/375 (60%), Gaps = 10/375 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ LK+ FGYS FR QK VI I D LV++ TG GKS+CYQ+P LV +V+SPL
Sbjct: 17 TVLKQVFGYSEFRDGQKAVIDAAINGHDSLVLLPTGGGKSVCYQIPALVLEGVTIVISPL 76
Query: 63 ISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLMQDQV L+ G+ A ++ ++ + V + G +LL++ PEK ++ F
Sbjct: 77 ISLMQDQVTQLQALGVKAAYVNNSLAREEQQLVYQQLHQGLIKLLYVAPEK--VLQRDFL 134
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L V LFA+DEAHC+S WGHDFR Y +L++L+ VP +ALTATA + R DI
Sbjct: 135 ERLSHLNVSLFAIDEAHCVSHWGHDFRPHYFRLNELKQRFAHVPMMALTATADKATRFDI 194
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+ LKL+ PY+ SFDR N+ Y ++ + + V +L++ + + +G I+YC + K
Sbjct: 195 VEQLKLQQPYIHTGSFDRPNIRYTIE--EKFKPMV-QLLRYLKEQKNQSG--IIYCTSRK 249
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V++I++ L G+ A YH M ++ R+ F RD+I+++VAT+AFGMGI+KP+VR
Sbjct: 250 RVDDIAEKLADAGLNAAAYHAGMSNEQRQFVQTGFARDDIQIVVATVAFGMGINKPNVRF 309
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V+HY PK++ESYYQE+GR GRDG+A+ +Y+ ++ + + + E +R +
Sbjct: 310 VLHYDIPKSIESYYQETGRAGRDGLAAEAIMYFDPADIGRVRRFFEDIDDEQRRRVEEQR 369
Query: 360 LLAAQRYCLLTTCRR 374
A + TCRR
Sbjct: 370 FNAMASFAEAQTCRR 384
>gi|326514896|dbj|BAJ99809.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 763
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 163/394 (41%), Positives = 237/394 (60%), Gaps = 26/394 (6%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ S LK+YFGYS FR Q + I+ ++ RDC +M TG GKS+CYQ+P LV LV+S
Sbjct: 24 LESVLKQYFGYSEFRGRQLEAIEAVLSGRDCFCLMPTGGGKSMCYQIPALVKTGVVLVIS 83
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETG--YFQLLFMTPEKACIIP 115
PLI+LM++QV SLK +GI AEFL S QT ++ + ++G +LL++TPE +
Sbjct: 84 PLIALMENQVSSLKSKGIPAEFLSSTQTTANKNKIHEDLDSGRPSLKLLYVTPE--LVAT 141
Query: 116 ISFWSKLLKAG----VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATA 171
F +KL K + L A+DEAHCIS WGHDFR Y+++ LR +P +ALTATA
Sbjct: 142 SGFKAKLTKLHNRGLLGLVAIDEAHCISTWGHDFRPSYRKISSLRKQFPDIPILALTATA 201
Query: 172 TEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSI 231
KV+ D+I+SL L+NP + ASF+R N+FY V R + +D++ +I + +G++
Sbjct: 202 VPKVQKDVISSLSLQNPVILKASFNRPNIFYEV----RYKDLLDDVFSDISNLLKSSGNV 257
Query: 232 --IVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFG 289
I+YC+ ++++ L Q G+ + YH + SK R ++ +V+VAT+AFG
Sbjct: 258 CSIIYCLERAACDDLTMHLSQQGISSAAYHAGLNSKVRTTVLDDWLSSRTQVVVATVAFG 317
Query: 290 MGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQT 349
MGID+ DVR V H+ PK++ES+YQESGR GRD S LYY + + +F S +
Sbjct: 318 MGIDRHDVRIVCHFNLPKSMESFYQESGRAGRDQQPSRSVLYYGLEDRRRMEFILRNSSS 377
Query: 350 ENQR-----TAIMESLLA--AQ--RYCLLTTCRR 374
Q+ T + E LA +Q YC +TCRR
Sbjct: 378 RKQQPPSSSTELSEKTLADFSQIVDYCESSTCRR 411
>gi|75762555|ref|ZP_00742410.1| ATP-dependent DNA helicase recQ [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|218897840|ref|YP_002446251.1| ATP-dependent DNA helicase RecQ [Bacillus cereus G9842]
gi|228901356|ref|ZP_04065548.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis IBL 4222]
gi|423562776|ref|ZP_17539052.1| ATP-dependent DNA helicase RecQ [Bacillus cereus MSX-A1]
gi|434375793|ref|YP_006610437.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis HD-789]
gi|74489957|gb|EAO53318.1| ATP-dependent DNA helicase recQ [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|218543132|gb|ACK95526.1| ATP-dependent DNA helicase RecQ [Bacillus cereus G9842]
gi|228858280|gb|EEN02748.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis IBL 4222]
gi|401199914|gb|EJR06807.1| ATP-dependent DNA helicase RecQ [Bacillus cereus MSX-A1]
gi|401874350|gb|AFQ26517.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis HD-789]
Length = 705
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 227/373 (60%), Gaps = 13/373 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGS----AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
LM+DQV +L Q GI+A ++ S A+ + +Q A+ G+++LL++ PE+ + + F
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISIAEANQRIQL-AKQGHYKLLYVAPER--LDSMEFVD 125
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDI 179
+L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 126 QLIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVREDI 185
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
N+L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 186 CNTLEINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRK 240
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+
Sbjct: 241 VVDQLYEDLMKAGVSVSKYHAGMSDSDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRY 300
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E
Sbjct: 301 VIHYQLPKNMESYYQEAGRAGRDGLDSTCILLYSSQDVQVQRFLIDQSTGESRFSNELEK 360
Query: 360 LLAAQRYCLLTTC 372
L YC C
Sbjct: 361 LQNMTDYCHTEQC 373
>gi|284034978|ref|YP_003384908.1| ATP-dependent DNA helicase RecQ [Spirosoma linguale DSM 74]
gi|283814271|gb|ADB36109.1| ATP-dependent DNA helicase RecQ [Spirosoma linguale DSM 74]
Length = 707
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 229/373 (61%), Gaps = 11/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK+Y+GY FRP Q+ +IQ I+ RD +V+M TG GKS+C+Q+P L+ +VVSPLI+
Sbjct: 15 LKRYYGYDRFRPMQEAIIQSILSGRDTVVLMPTGGGKSVCFQIPALMLPGLTVVVSPLIA 74
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L GI A F S QT ++ +G +LL+++PEK ++ SF+
Sbjct: 75 LMKDQVGALHMNGIQAAFYNSTQTSREQREIENDCISGKLKLLYVSPEK--LLTESFFQF 132
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + LFA+DEAHCIS WGHDFR EY QL L+ VP +ALTATA + R DI
Sbjct: 133 LSLTNLSLFAIDEAHCISSWGHDFRPEYTQLHVLKEQFPTVPTIALTATADKLTRQDIAT 192
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L + +P + + SF+RKNL ++V+ GQ+ + ++++ + + +G I+YC++ K
Sbjct: 193 RLGMNDPAIFVDSFNRKNL--SLQVLP-GQNRIQQIIRLLQQKPDTSG--IIYCLSRKST 247
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E ++ L++ G A YH +M R + F+RD++R++ AT+AFGMGIDK +VR VI
Sbjct: 248 ESLAAKLQEKGFSAAFYHAKMDPDDRSKTQEAFLRDDVRIICATIAFGMGIDKSNVRWVI 307
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
HY PK +ES+YQE GR GRDG A+ L+Y+ ++ A E+ N + + L
Sbjct: 308 HYNMPKNIESFYQEIGRAGRDGAAAQTVLFYSFADVATYKDMLAENNPANLGLQLAK-LE 366
Query: 362 AAQRYCLLTTCRR 374
Q+Y TCRR
Sbjct: 367 RMQQYADAHTCRR 379
>gi|322514973|ref|ZP_08067985.1| ATP-dependent helicase RecQ [Actinobacillus ureae ATCC 25976]
gi|322119026|gb|EFX91190.1| ATP-dependent helicase RecQ [Actinobacillus ureae ATCC 25976]
Length = 602
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 161/375 (42%), Positives = 219/375 (58%), Gaps = 14/375 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L FGY FR Q++VI ++ RDCLV+M TG GKSLCYQ+P L LV+SPLIS
Sbjct: 12 LNNVFGYQSFRHGQQEVIDSVLAGRDCLVIMTTGGGKSLCYQVPALCLDGITLVISPLIS 71
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A FL S QT V+ KA +G +LL+++PEK ++ F+
Sbjct: 72 LMKDQVDQLLTNGVEAGFLNSTQTFEEQQDVEQKALSGQLKLLYLSPEK--VMTQGFFRF 129
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
+ + L AVDEAHC+S+WGHDFR EY L LR VP +ALTATA R DI+
Sbjct: 130 ISLCKISLIAVDEAHCVSQWGHDFRSEYTLLGNLRNTFPNVPLMALTATADPTTRHDILQ 189
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSF--VDELVQEILKSVAGAGSIIVYCMTIK 239
L+L +P+ + SFDR N+ Y V+ + F +++L + I K +G IVYC + K
Sbjct: 190 HLRLTDPHTYLGSFDRPNIRYTVQ-----EKFKPMEQLAKFISKQHGKSG--IVYCNSRK 242
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
VEEI++ L + YH M + RE F RD I+V+VAT+AFGMGI+K +VR
Sbjct: 243 KVEEITEKLAARKISVMGYHAGMSVQQRETVQNAFQRDNIQVVVATIAFGMGINKSNVRF 302
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V+H+ P+++ESYYQE+GR GRD + S L+Y +++A E QR
Sbjct: 303 VVHFDLPRSIESYYQETGRAGRDDLPSEAVLFYDPADYAWLQKVLLEEPESKQRDIKQHK 362
Query: 360 LLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 363 LQAIGAFAESQTCRR 377
>gi|229179100|ref|ZP_04306457.1| ATP-dependent DNA helicase RecQ [Bacillus cereus 172560W]
gi|228604468|gb|EEK61932.1| ATP-dependent DNA helicase RecQ [Bacillus cereus 172560W]
Length = 705
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 154/373 (41%), Positives = 227/373 (60%), Gaps = 13/373 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGS----AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
LM+DQV +L Q GI+A ++ S A+ + +Q A+ G+++LL++ PE+ + + F
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISIAEANQRIQL-AKQGHYKLLYVAPER--LDSMEFVD 125
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDI 179
+L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P + ALTATAT +VR DI
Sbjct: 126 QLIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLILALTATATPQVRDDI 185
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
N+L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 186 CNTLEINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRK 240
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+
Sbjct: 241 VVDQLYEDLMKAGVSVSKYHAGMSDSDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRY 300
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E
Sbjct: 301 VIHYQLPKNMESYYQEAGRAGRDGLDSTCILLYSSQDVQVQRFLIDQSTGESRFSNELEK 360
Query: 360 LLAAQRYCLLTTC 372
L YC C
Sbjct: 361 LQNMTDYCHTEQC 373
>gi|422015295|ref|ZP_16361894.1| ATP-dependent DNA helicase RecQ [Providencia burhodogranariea DSM
19968]
gi|414099460|gb|EKT61101.1| ATP-dependent DNA helicase RecQ [Providencia burhodogranariea DSM
19968]
Length = 608
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 161/375 (42%), Positives = 221/375 (58%), Gaps = 10/375 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
S L FGY FRP Q+ VI+ I++ RD LV+M TG GKSLCYQ+P LV LVVSPL
Sbjct: 15 SILNSTFGYQSFRPGQEAVIRAILDNRDSLVLMPTGGGKSLCYQVPALVKDGVTLVVSPL 74
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLM+DQV L+ GINA L S+QT V G +LL++ PE+ ++ F
Sbjct: 75 ISLMKDQVDQLRLHGINAACLNSSQTPQEQREVMDSCAQGNLKLLYVAPER--LLTDYFL 132
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
S+L + L AVDEAHCIS+WGHDFR EY+ L +LR VP +ALTATA E R DI
Sbjct: 133 SQLANWNIALLAVDEAHCISQWGHDFRPEYRALGQLRQHFPDVPVMALTATADETTRADI 192
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
I L L NP V ++SFDR N+ Y ++ + + E + +K+ G I VYC +
Sbjct: 193 IRLLALDNPLVQVSSFDRPNIRY--TLVEKYKPL--EQLWFFIKAQKGKAGI-VYCNSRN 247
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
VEE ++ L++ G+ YH + S+ RE F++D ++++VAT+AFGMGI+K +VR
Sbjct: 248 KVEETAERLQKRGLSVAAYHAGLDSQQREWVQDAFLKDNLQIVVATVAFGMGINKSNVRF 307
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V H+ P+ +E+YYQE+GR GRDG+ + L+Y ++ A E Q+
Sbjct: 308 VAHFDIPRNIEAYYQETGRAGRDGVEAEAILFYDPADMAWLRRCLEEKPAGVQQDIERHK 367
Query: 360 LLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 368 LNAIAAFAEAQTCRR 382
>gi|392533361|ref|ZP_10280498.1| ATP-dependent DNA helicase [Pseudoalteromonas arctica A 37-1-2]
Length = 607
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 150/375 (40%), Positives = 230/375 (61%), Gaps = 10/375 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ LK+ FGYS FR QK VI I +D LV++ TG GKS+CYQ+P LV +V+SPL
Sbjct: 17 TVLKQVFGYSEFRDGQKTVIDAAINGQDSLVLLPTGGGKSVCYQIPALVLEGVTIVISPL 76
Query: 63 ISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLMQDQV L+ G+ A ++ ++ + V + G +LL++ PEK ++ F
Sbjct: 77 ISLMQDQVSQLQALGVKAAYVNNSLAREEQQLVYQQLHQGQIKLLYVAPEK--VLQREFL 134
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L V LFA+DEAHC+S WGHDFR Y +L++L+ VP +ALTATA + R DI
Sbjct: 135 ERLSHLNVSLFAIDEAHCVSHWGHDFRPHYFRLNELKQRFAHVPMMALTATADKATRFDI 194
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+ LKL+ PY+ SFDR N+ Y ++ + + V +L++ + + + +G I+YC + K
Sbjct: 195 VEQLKLQQPYIHTGSFDRPNIRYTIE--EKFKPMV-QLLRYLKEQKSQSG--IIYCTSRK 249
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V++I++ + G+ A YH M ++ R+ F RD+I+++VAT+AFGMGI+KP+VR
Sbjct: 250 RVDDIAEKIADAGLNAAAYHAGMSNEQRQFVQTGFARDDIQIVVATVAFGMGINKPNVRF 309
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V+HY PK++ESYYQE+GR GRDG+A+ +Y+ ++ + + + E +R +
Sbjct: 310 VLHYDIPKSIESYYQETGRAGRDGLAAEAIMYFDPADIGRVRRFFEDIDDEQRRRVEEQR 369
Query: 360 LLAAQRYCLLTTCRR 374
A + TCRR
Sbjct: 370 FNAMASFAEAQTCRR 384
>gi|228965757|ref|ZP_04126836.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
sotto str. T04001]
gi|402559862|ref|YP_006602586.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis HD-771]
gi|423360197|ref|ZP_17337700.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD022]
gi|228793958|gb|EEM41482.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
sotto str. T04001]
gi|401082287|gb|EJP90557.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD022]
gi|401788514|gb|AFQ14553.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis HD-771]
Length = 705
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 227/373 (60%), Gaps = 13/373 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGS----AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
LM+DQV +L Q GI+A ++ S A+ + +Q A+ G+++LL++ PE+ + + F
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISIAEANQRIQL-AKQGHYKLLYVAPER--LDSMEFVD 125
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDI 179
+L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 126 QLIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVREDI 185
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
N+L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 186 CNTLEINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRK 240
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+
Sbjct: 241 VVDQLYEDLMKAGVSVSKYHAGMSDSDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRY 300
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E
Sbjct: 301 VIHYQLPKNMESYYQEAGRAGRDGLDSTCILLYSSQDVQVQRFLIDQSTGESRFSNELEK 360
Query: 360 LLAAQRYCLLTTC 372
L YC C
Sbjct: 361 LQNMTDYCHTEQC 373
>gi|253991584|ref|YP_003042940.1| ATP-dependent DNA helicase [Photorhabdus asymbiotica]
gi|211638462|emb|CAR67084.1| atp-dependent dna helicase recq (ec 3.6.1.-) [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|253783034|emb|CAQ86199.1| ATP-dependent DNA helicase [Photorhabdus asymbiotica]
Length = 608
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 158/373 (42%), Positives = 222/373 (59%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+ VI I+E RDCLV+M TG GKSLCYQ+P L+ LVVSPLIS
Sbjct: 17 LRETFGYQQFRPGQQQVINTILEGRDCLVIMPTGGGKSLCYQIPALIQEGVTLVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A+ L S Q V + G +LL++ PE+ ++ +F +
Sbjct: 77 LMKDQVDQLQANGVAADCLNSTQAREQQIDVIRRCRQGMVKLLYIAPER--LMMDNFLEQ 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
LL+ + AVDEAHCIS+WGHDFR EY+ L +LR +P +ALTATA E R DI+
Sbjct: 135 LLEWQPAILAVDEAHCISQWGHDFRPEYRALGQLRQRFPTLPVIALTATADETTRNDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L NP + I+SFDR N+ Y +I + + +D+L I +G I+YC + V
Sbjct: 195 LLNLNNPLIHISSFDRPNIRY--TLIEKYKP-LDQLWLFIRAQKGKSG--IIYCNSRSKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
EE S+ L++ G+ YH + + R F RD+++V+VAT+AFGMGI+KP+VR V+
Sbjct: 250 EETSERLQKRGLSVAPYHAGLDNNQRARVQDAFQRDDLQVVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ E Q+ L
Sbjct: 310 HFNIPRNIESYYQETGRAGRDGLPAEAVLFYDPADMVWLRRCLEEKPVGTQQDIERHKLN 369
Query: 362 AAQRYCLLTTCRR 374
A + TCRR
Sbjct: 370 AMGAFAEAQTCRR 382
>gi|359441917|ref|ZP_09231801.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20429]
gi|358036178|dbj|GAA68050.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20429]
Length = 596
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 150/375 (40%), Positives = 230/375 (61%), Gaps = 10/375 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ LK+ FGYS FR QK VI I +D LV++ TG GKS+CYQ+P LV +V+SPL
Sbjct: 6 TVLKQVFGYSEFRDGQKTVIDAAINGQDSLVLLPTGGGKSVCYQIPALVLEGVTIVISPL 65
Query: 63 ISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLMQDQV L+ G+ A ++ ++ + V + G +LL++ PEK ++ F
Sbjct: 66 ISLMQDQVSQLQALGVKAAYVNNSLAREEQQLVYQQLHQGQIKLLYVAPEK--VLQREFL 123
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L V LFA+DEAHC+S WGHDFR Y +L++L+ VP +ALTATA + R DI
Sbjct: 124 ERLSHLNVSLFAIDEAHCVSHWGHDFRPHYFRLNELKQRFAHVPMMALTATADKATRFDI 183
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+ LKL+ PY+ SFDR N+ Y ++ + + V +L++ + + + +G I+YC + K
Sbjct: 184 VEQLKLQQPYIHTGSFDRPNIRYTIE--EKFKPMV-QLLRYLKEQKSQSG--IIYCTSRK 238
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V++I++ + G+ A YH M ++ R+ F RD+I+++VAT+AFGMGI+KP+VR
Sbjct: 239 RVDDIAEKIADAGLNAAAYHAGMSNEQRQFVQTGFARDDIQIVVATVAFGMGINKPNVRF 298
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V+HY PK++ESYYQE+GR GRDG+A+ +Y+ ++ + + + E +R +
Sbjct: 299 VLHYDIPKSIESYYQETGRAGRDGLAAEAIMYFDPADIGRVRRFFEDIDDEQRRRVEEQR 358
Query: 360 LLAAQRYCLLTTCRR 374
A + TCRR
Sbjct: 359 FNAMASFAEAQTCRR 373
>gi|423345823|ref|ZP_17323512.1| ATP-dependent DNA helicase RecQ [Parabacteroides merdae CL03T12C32]
gi|409221558|gb|EKN14507.1| ATP-dependent DNA helicase RecQ [Parabacteroides merdae CL03T12C32]
Length = 609
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 160/377 (42%), Positives = 224/377 (59%), Gaps = 11/377 (2%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++S LK++FGY+ FRP Q ++IQR ++K D LV+M TG GKS+C+QLP + TA+VVS
Sbjct: 4 LLSLLKRFFGYTSFRPLQAEIIQRTLQKEDSLVLMPTGGGKSICFQLPAIYMPGTAIVVS 63
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPIS 117
PLI+LM+DQV L GI A L S + V+ G +LL+++PE II
Sbjct: 64 PLIALMKDQVEGLIANGIPAATLNSMMPEEERHRVRQLCIQGKVKLLYISPE--GIISEL 121
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
W L + + L A+DEAHCIS WGHDFR EY QL L+ VP +ALTATA + R
Sbjct: 122 HWL-LPRIDISLIAIDEAHCISHWGHDFRPEYTQLSVLKENFPKVPIIALTATADKITRT 180
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI+N LKL++P I+SFDR NL ++ + + +V I + +G I+YCM+
Sbjct: 181 DILNQLKLRDPKTFISSFDRPNLSLTIRRGLSKKEKIAAIVHFINRHHRQSG--IIYCMS 238
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
E + + L + ++A YH + S RE+A FI D + V+ AT+AFGMGIDK +V
Sbjct: 239 RNSTESLVEELSEYSIRAVAYHAGLSSDKREKAQDDFINDRVNVVCATVAFGMGIDKSNV 298
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHY P ++E+YYQE GR GRDG+ S L+Y+ + + ES Q+ +
Sbjct: 299 RWVIHYNMPASIENYYQEIGRAGRDGMKSDTLLFYSVGDILLLRRFAEES---GQKDVSL 355
Query: 358 ESLLAAQRYCLLTTCRR 374
+ L +RYC CRR
Sbjct: 356 QKLNRMRRYCEADICRR 372
>gi|206971887|ref|ZP_03232836.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH1134]
gi|206733272|gb|EDZ50445.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH1134]
Length = 705
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 154/373 (41%), Positives = 227/373 (60%), Gaps = 13/373 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGS----AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
LM+DQV +L Q GI+A ++ S A+ + +Q A+ G+++LL++ PE+ + + F
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISIAEANQRIQL-AKQGHYKLLYVAPER--LDSMEFVD 125
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDI 179
+L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P + ALTATAT +VR DI
Sbjct: 126 QLIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLILALTATATPQVRDDI 185
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
N+L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 186 CNTLEINKENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRK 240
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+
Sbjct: 241 VVDQLYEDLMKAGVSVSKYHAGMSDSDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRY 300
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E
Sbjct: 301 VIHYQLPKNMESYYQEAGRAGRDGLDSTCILLYSSQDVQVQRFLIDQSTGESRFSNELEK 360
Query: 360 LLAAQRYCLLTTC 372
L YC C
Sbjct: 361 LQNMTDYCHTEQC 373
>gi|78486335|ref|YP_392260.1| ATP-dependent DNA helicase RecQ [Thiomicrospira crunogena XCL-2]
gi|78364621|gb|ABB42586.1| ATP-dependent DNA helicase RecQ [Thiomicrospira crunogena XCL-2]
Length = 629
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 159/376 (42%), Positives = 227/376 (60%), Gaps = 8/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+S L+ FGY FR +Q ++I ++ DC V+M TG GKSLCYQ+P L+ TA+VVSP
Sbjct: 35 LSLLQTVFGYDAFRSHQAEIIDDLVAGSDCFVLMPTGGGKSLCYQIPALIRLGTAIVVSP 94
Query: 62 LISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LI+LMQDQV +LK G+ A + S ++ V + TG LL+++PE+ ++ +F
Sbjct: 95 LIALMQDQVSALKANGVKAAYYNSTLDYESADQVLMQLHTGQLDLLYVSPER--LLNQTF 152
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ +L + + LFA+DEAHCIS+WGHDFR EY ++ +LR + VPF+ALTATA R D
Sbjct: 153 FQQLQQLPIALFAIDEAHCISQWGHDFRPEYSKIGQLRDYFPQVPFIALTATADAATRQD 212
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L L P+V ++SFDR N+ Y V + Q + +L+ + S IVYC++
Sbjct: 213 ILQRLNLHQPHVHVSSFDRPNIRY--TVFEKRQP-MKQLLSFLDARPGHQESGIVYCLSR 269
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K VEE++ L+ G +A YH + R+ H+ FIRDEI ++VAT+AFGMGIDKP+VR
Sbjct: 270 KRVEEVALQLQDKGYRAKAYHAGLPGDIRQTVHQQFIRDEIDIVVATVAFGMGIDKPNVR 329
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+HY PK +E YYQE+GR GRDG+ S L Y + + + E QR
Sbjct: 330 FVVHYDLPKNIEGYYQETGRAGRDGLESEALLLYGAQDIVTARHFVENNPNEAQRRIESF 389
Query: 359 SLLAAQRYCLLTTCRR 374
L + +CRR
Sbjct: 390 KLSCMVDFAEAQSCRR 405
>gi|39996003|ref|NP_951954.1| ATP-dependent DNA helicase RecQ [Geobacter sulfurreducens PCA]
gi|39982768|gb|AAR34227.1| ATP-dependent DNA helicase RecQ [Geobacter sulfurreducens PCA]
Length = 603
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 148/353 (41%), Positives = 215/353 (60%), Gaps = 15/353 (4%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
++ L+ FGY FRP+Q++++ R+ D V+M TG GKSLCYQ+P LV +V+SP
Sbjct: 6 LAVLRTVFGYRSFRPFQEEIVDRVARGGDTFVLMPTGGGKSLCYQIPSLVRPGVGIVISP 65
Query: 62 LISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV +L++ G+ A S + V + G LL++ PE+ ++ +F
Sbjct: 66 LISLMKDQVDALRENGVAAACYNSTLGERESRRVLARLHGGELDLLYVAPER--LMTDAF 123
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+L + + LFA+DEAHC+S+WGHDFR EY +L +LR VP +ALTATA + R D
Sbjct: 124 LERLREIPIALFAIDEAHCVSQWGHDFRPEYVELGRLRGLFPTVPMIALTATADAQTRGD 183
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L L++ + + FDR N+ Y V+ + + F ++E L + I VYC++
Sbjct: 184 IVTRLGLRDAEMFVTGFDRPNIRY--SVLEKQKPF--RQLEEFLATRPREAGI-VYCLSR 238
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K VEE+++ L+ GV+AG YH + R F+RD+IRV+VAT+AFGMGIDKP+VR
Sbjct: 239 KRVEEVAEKLRAAGVEAGAYHAGLADAERSRVQEAFLRDDIRVVVATVAFGMGIDKPNVR 298
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTEN 351
V+HY PK +ESYYQE+GR GRDG+ + L F GD S E+
Sbjct: 299 FVVHYDLPKNIESYYQETGRAGRDGLPAEALLL-----FGYGDIPVSRSLIES 346
>gi|229442299|gb|AAI72840.1| Werner syndrome protein [synthetic construct]
Length = 863
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 151/345 (43%), Positives = 219/345 (63%), Gaps = 8/345 (2%)
Query: 34 VMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQ 93
VMATG GKSLC+Q PP+ GK LV+SPLISLM+DQV+ LK I A FLGSAQ+++ V
Sbjct: 1 VMATGYGKSLCFQYPPVYVGKIGLVISPLISLMEDQVLQLKMSNIPACFLGSAQSEN-VL 59
Query: 94 TKAETGYFQLLFMTPEKACIIPISFWSKL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQL 152
T + G ++++++TPE C + +L G+ L AVDEAHCISEWGHDFR +++L
Sbjct: 60 TDIKLGKYRIVYVTPE-YCSGNMGLLQQLEADIGITLIAVDEAHCISEWGHDFRDSFRKL 118
Query: 153 DKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQS 212
L+T L VP VALTATA+ +R DI+ L L+NP +T FDR NL+ V+ + +
Sbjct: 119 GSLKTALPMVPIVALTATASSSIREDIVRCLNLRNPQITCTGFDRPNLYLEVR--RKTGN 176
Query: 213 FVDELVQEILKSVAG---AGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREE 269
+ +L ++K+ + G I+YC + K ++++ L++L + GTYH M R++
Sbjct: 177 ILQDLQPFLVKTSSHWEFEGPTIIYCPSRKMTQQVTGELRKLNLSCGTYHAGMSFSTRKD 236
Query: 270 AHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCW 329
H F+RDEI+ ++AT+AFGMGI+K D+R VIHYG PK +ESYYQE GR GRDG+ S C
Sbjct: 237 IHHRFVRDEIQCVIATIAFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCH 296
Query: 330 LYYARSNFAKGDFYCGESQTENQRTAIMESLLAAQRYCLLTTCRR 374
+ +A ++ E + E R ++ + ++Y + CRR
Sbjct: 297 VLWAPADINLNRHLLTEIRNEKFRLYKLKMMAKMEKYLHSSRCRR 341
>gi|253690325|ref|YP_003019515.1| ATP-dependent DNA helicase RecQ [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251756903|gb|ACT14979.1| ATP-dependent DNA helicase RecQ [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 608
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 224/376 (59%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
V L+ FGY FRP Q+++I + +DCLV+M TG GKSLCYQ+P LV LVVSP
Sbjct: 14 VQVLRDTFGYQQFRPGQQEIISATLSGQDCLVIMPTGGGKSLCYQIPALVMDGLTLVVSP 73
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ G++A L S QT V TG +LL++ PE+ + SF
Sbjct: 74 LISLMKDQVDQLQAYGVSAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPER--LTTDSF 131
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
L + L AVDEAHCIS+WGHDFR EY+ L +++ +PF+ALTATA E R D
Sbjct: 132 LDHLAHWQIALIAVDEAHCISQWGHDFRPEYRALGQIKQRFPHLPFIALTATADETTRND 191
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L L++P + I SFDR N+ Y ++ + + +D+L + +G I+YC +
Sbjct: 192 IVRLLDLQSPLIQINSFDRPNIRY--TLVEKFKP-LDQLWMFVQGQRGKSG--IIYCNSR 246
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE+I L+ G+ AG YH + ++ R + F+RD+++V+VAT+AFGMGI+KP+VR
Sbjct: 247 SRVEDICARLQARGLSAGAYHAGLDNERRAQVQEAFLRDDLQVVVATVAFGMGINKPNVR 306
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+H+ P+ +ESYYQE+GR GRDG+A+ L+Y ++ A E Q
Sbjct: 307 FVVHFDIPRNIESYYQETGRAGRDGLAAEAALFYDPADMAWLRRCLEEKPAGPQLDIERH 366
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 367 KLNAMGAFAEAQTCRR 382
>gi|455645205|gb|EMF24269.1| ATP-dependent DNA helicase RecQ [Citrobacter freundii GTC 09479]
Length = 609
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 158/375 (42%), Positives = 224/375 (59%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLI
Sbjct: 16 VLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLI 75
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q+ V TG +LL++ PE+ ++ +F
Sbjct: 76 SLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQIRLLYIAPER--LMLDNFLE 133
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PFVALTATA E R+DI+
Sbjct: 134 HLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFVALTATADETTRLDIV 193
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 194 RLLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 248
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ AG YH + + R E F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 249 VEDTAARLQSRGISAGAYHAGLENAVRAEVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 308
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I
Sbjct: 309 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPAGQLLDIERHK 367
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 368 LNAMGAFAEAQTCRR 382
>gi|423722012|ref|ZP_17696188.1| ATP-dependent DNA helicase RecQ [Parabacteroides merdae CL09T00C40]
gi|409242714|gb|EKN35474.1| ATP-dependent DNA helicase RecQ [Parabacteroides merdae CL09T00C40]
Length = 609
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 160/377 (42%), Positives = 224/377 (59%), Gaps = 11/377 (2%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++S LK++FGY+ FRP Q ++IQR ++K D LV+M TG GKS+C+QLP + TA+VVS
Sbjct: 4 LLSLLKRFFGYTSFRPLQAEIIQRTLQKEDSLVLMPTGGGKSICFQLPAIYMPGTAIVVS 63
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPIS 117
PLI+LM+DQV L GI A L S + V+ G +LL+++PE II
Sbjct: 64 PLIALMKDQVEGLIANGIPAATLNSMMPEEERHRVRQLCIQGKVKLLYISPE--GIISEL 121
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
W L + + L A+DEAHCIS WGHDFR EY QL L+ VP +ALTATA + R
Sbjct: 122 HWL-LPRIDISLIAIDEAHCISHWGHDFRPEYTQLSVLKENFPKVPIIALTATADKITRT 180
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI+N LKL++P I+SFDR NL ++ + + +V I + +G I+YCM+
Sbjct: 181 DILNQLKLRDPKTFISSFDRPNLSLTIRRGLSKKEKIAAIVHFINRHHRQSG--IIYCMS 238
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
E + + L + ++A YH + S RE+A FI D + V+ AT+AFGMGIDK +V
Sbjct: 239 RNSTESLVEELSEYSIRAVAYHAGLSSDKREKAQDDFINDRVNVVCATVAFGMGIDKSNV 298
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHY P ++E+YYQE GR GRDG+ S L+Y+ + + ES Q+ +
Sbjct: 299 RWVIHYNMPASIENYYQEIGRAGRDGMKSDTLLFYSVGDILLLRRFAEES---GQKDVSL 355
Query: 358 ESLLAAQRYCLLTTCRR 374
+ L +RYC CRR
Sbjct: 356 QKLNRMRRYCEADICRR 372
>gi|395230323|ref|ZP_10408628.1| ATP-dependent DNA helicase recQ [Citrobacter sp. A1]
gi|424730831|ref|ZP_18159424.1| atp-dependent dna helicase [Citrobacter sp. L17]
gi|394716054|gb|EJF21831.1| ATP-dependent DNA helicase recQ [Citrobacter sp. A1]
gi|422894736|gb|EKU34544.1| atp-dependent dna helicase [Citrobacter sp. L17]
Length = 604
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 158/375 (42%), Positives = 224/375 (59%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLI
Sbjct: 11 VLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLI 70
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q+ V TG +LL++ PE+ ++ +F
Sbjct: 71 SLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQIRLLYIAPER--LMLDNFLE 128
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PFVALTATA E R+DI+
Sbjct: 129 HLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFVALTATADETTRLDIV 188
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 189 RLLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 243
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ AG YH + + R E F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 244 VEDTAARLQSRGISAGAYHAGLENAVRAEVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 303
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I
Sbjct: 304 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPAGQLLDIERHK 362
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 363 LNAMGAFAEAQTCRR 377
>gi|423413420|ref|ZP_17390540.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG3O-2]
gi|423430795|ref|ZP_17407799.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG4O-1]
gi|401101518|gb|EJQ09507.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG3O-2]
gi|401118872|gb|EJQ26700.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG4O-1]
Length = 705
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 154/373 (41%), Positives = 227/373 (60%), Gaps = 13/373 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGS----AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
LM+DQV +L Q GI+A ++ S A+ + +Q A+ G+++LL++ PE+ + + F
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISIAEANQRIQL-AKQGHYKLLYVAPER--LDSMEFVD 125
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDI 179
+L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P + ALTATAT +VR DI
Sbjct: 126 QLIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLILALTATATPQVRDDI 185
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
N+L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 186 CNTLEINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRK 240
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+
Sbjct: 241 VVDQLYEDLMKAGVSVSKYHAGMSDSDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRY 300
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E
Sbjct: 301 VIHYQLPKNMESYYQEAGRAGRDGLDSTCILLYSSQDVQVQRFLIDQSTGESRFSNELEK 360
Query: 360 LLAAQRYCLLTTC 372
L YC C
Sbjct: 361 LQNMTDYCHTEQC 373
>gi|154492528|ref|ZP_02032154.1| hypothetical protein PARMER_02162 [Parabacteroides merdae ATCC
43184]
gi|154087753|gb|EDN86798.1| ATP-dependent DNA helicase RecQ [Parabacteroides merdae ATCC 43184]
Length = 621
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 160/377 (42%), Positives = 224/377 (59%), Gaps = 11/377 (2%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++S LK++FGY+ FRP Q ++IQR ++K D LV+M TG GKS+C+QLP + TA+VVS
Sbjct: 16 LLSLLKRFFGYTSFRPLQAEIIQRTLQKEDSLVLMPTGGGKSICFQLPAIYMPGTAIVVS 75
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPIS 117
PLI+LM+DQV L GI A L S + V+ G +LL+++PE II
Sbjct: 76 PLIALMKDQVEGLIANGIPAATLNSMMPEEERHRVRQLCIQGKVKLLYISPE--GIISEL 133
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
W L + + L A+DEAHCIS WGHDFR EY QL L+ VP +ALTATA + R
Sbjct: 134 HWL-LPRIDISLIAIDEAHCISHWGHDFRPEYTQLSVLKENFPKVPIIALTATADKITRT 192
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI+N LKL++P I+SFDR NL ++ + + +V I + +G I+YCM+
Sbjct: 193 DILNQLKLRDPKTFISSFDRPNLSLTIRRGLSKKEKIAAIVHFINRHHRQSG--IIYCMS 250
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
E + + L + ++A YH + S RE+A FI D + V+ AT+AFGMGIDK +V
Sbjct: 251 RNSTESLVEELSEYSIRAVAYHAGLSSDKREKAQDDFINDRVNVVCATVAFGMGIDKSNV 310
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHY P ++E+YYQE GR GRDG+ S L+Y+ + + ES Q+ +
Sbjct: 311 RWVIHYNMPASIENYYQEIGRAGRDGMKSDTLLFYSVGDILLLRRFAEES---GQKDVCL 367
Query: 358 ESLLAAQRYCLLTTCRR 374
+ L +RYC CRR
Sbjct: 368 QKLNRMRRYCEADICRR 384
>gi|406595136|ref|YP_006746266.1| ATP-dependent DNA helicase [Alteromonas macleodii ATCC 27126]
gi|406372457|gb|AFS35712.1| ATP-dependent DNA helicase [Alteromonas macleodii ATCC 27126]
Length = 613
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 157/381 (41%), Positives = 231/381 (60%), Gaps = 23/381 (6%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ LK FGY FR Q +VI ++ E +D LV++ TG GKSLCYQ+P LV TA+VVSPL
Sbjct: 22 TVLKDVFGYDAFRDGQGEVIHQVCEGKDALVLLPTGGGKSLCYQIPALVRQGTAIVVSPL 81
Query: 63 ISLMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLMQDQV LK G+ A +L S A + + + G LL+++PE+ ++ F
Sbjct: 82 ISLMQDQVEQLKALGVKAAYLNSTLEADEQARINDALQAGKLDLLYVSPER--LMQYYFQ 139
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
L A + LFA+DEAHC+S WGHDFR +Y+ L ++++ +P + LTATA + DI
Sbjct: 140 QSLAHADIALFAIDEAHCVSHWGHDFRQDYRALGQIKSRFPSIPVIGLTATADSATQADI 199
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+ L L NP V SFDR N+ Y +V+++ ++F D++V + + GS I+YC +
Sbjct: 200 LTQLNLNNPLVYKGSFDRPNIRY--RVMSKYKAF-DQVVAYVKQQ---EGSGIIYCNSRA 253
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+++ L + G + YH M + RE R F+ D+I ++VAT+AFGMGI+K +VR+
Sbjct: 254 KVDDLHAKLFRQGFRCAAYHAGMDNDERELVQRQFLNDKIDIVVATVAFGMGINKSNVRY 313
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYC--GE----SQTENQR 353
V+H+ P+++ESYYQE+GR GRDG+ S L + + A+ + GE +Q E Q+
Sbjct: 314 VVHHDVPRSVESYYQETGRAGRDGLESEALLLFDEKDAARVKQWIEQGEIAERNQIELQK 373
Query: 354 TAIMESLLAAQRYCLLTTCRR 374
A ME+ AQ TCRR
Sbjct: 374 FAAMEAFSEAQ------TCRR 388
>gi|359434605|ref|ZP_09224868.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20652]
gi|357918814|dbj|GAA61117.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20652]
Length = 607
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 150/375 (40%), Positives = 230/375 (61%), Gaps = 10/375 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ LK+ FGYS FR QK VI I +D LV++ TG GKS+CYQ+P LV +V+SPL
Sbjct: 17 TVLKQVFGYSEFRDGQKTVIDAAINGQDSLVLLPTGGGKSVCYQIPALVLEGVTIVISPL 76
Query: 63 ISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLMQDQV L+ G+ A ++ ++ + V + G +LL++ PEK ++ F
Sbjct: 77 ISLMQDQVTQLQALGVKAAYVNNSLAREEQQLVYQQLHQGQIKLLYVAPEK--VLQREFL 134
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L V LFA+DEAHC+S WGHDFR Y +L++L+ VP +ALTATA + R DI
Sbjct: 135 ERLSHLNVSLFAIDEAHCVSHWGHDFRPHYFRLNELKQRFAHVPMMALTATADKATRFDI 194
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+ LKL+ PY+ SFDR N+ Y ++ + + V +L++ + + + +G I+YC + K
Sbjct: 195 VEQLKLQQPYIHTGSFDRPNIRYTIE--EKFKPMV-QLLRYLKEQKSQSG--IIYCTSRK 249
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V++I++ + G+ A YH M ++ R+ F RD+I+++VAT+AFGMGI+KP+VR
Sbjct: 250 RVDDIAEKIADAGLNAAAYHAGMSNEQRQFVQTGFARDDIQIVVATVAFGMGINKPNVRF 309
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V+HY PK++ESYYQE+GR GRDG+A+ +Y+ ++ + + + E +R +
Sbjct: 310 VLHYDIPKSIESYYQETGRAGRDGLAAEAIMYFDPADIGRVRRFFEDIDDEQRRRVEEQR 369
Query: 360 LLAAQRYCLLTTCRR 374
A + TCRR
Sbjct: 370 FNAMASFAEAQTCRR 384
>gi|229070293|ref|ZP_04203543.1| ATP-dependent DNA helicase RecQ [Bacillus cereus F65185]
gi|228712857|gb|EEL64782.1| ATP-dependent DNA helicase RecQ [Bacillus cereus F65185]
Length = 705
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 154/373 (41%), Positives = 227/373 (60%), Gaps = 13/373 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGS----AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
LM+DQV +L Q GI+A ++ S A+ + +Q A+ G+++LL++ PE+ + + F
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISIAEANQRIQL-AKQGHYKLLYVAPER--LDSMEFVD 125
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDI 179
+L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 126 QLIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDI 185
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
N++++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 186 CNTIEINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRK 240
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+
Sbjct: 241 VVDQLYEDLMKAGVSVSKYHAGMSDSDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRY 300
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E
Sbjct: 301 VIHYQLPKNMESYYQEAGRAGRDGLDSTCILLYSSQDVQVQRFLIDQSTGESRFSNELEK 360
Query: 360 LLAAQRYCLLTTC 372
L YC C
Sbjct: 361 LQNMTDYCHTEQC 373
>gi|354721299|ref|ZP_09035514.1| ATP-dependent DNA helicase RecQ [Enterobacter mori LMG 25706]
Length = 609
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 157/374 (41%), Positives = 224/374 (59%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L + FGY FRP Q+ +I+ ++E RDCLVVM TG GKSLCYQ+P LV +VVSPLIS
Sbjct: 17 LHETFGYQQFRPGQETIIETVLEGRDCLVVMPTGGGKSLCYQVPALVLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S QT V TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLLANGVAAACLNSTQTREQQQEVMAGCRTGQIRLLYIAPER--LMLDNFLDH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R+DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPELPFMALTATADDTTRLDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +PY+ ++SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPYIQVSSFDRPNIRY---MLMEKFKPLDQLLRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQNRGFSAAAYHAGLENHIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|228985910|ref|ZP_04146058.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228773839|gb|EEM22257.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 705
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 226/373 (60%), Gaps = 13/373 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGS----AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
LM+DQV +L Q GI+A ++ S A+ + +Q A+ G+++LL++ PE+ + + F
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISIAEANQRIQL-AKQGHYKLLYVAPER--LDSMEFVD 125
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDI 179
+L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 126 QLIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDI 185
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
N+L + + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 186 CNTLGINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRK 240
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+
Sbjct: 241 VVDQLYEDLMKAGVSVSKYHAGMSDNDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRY 300
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E
Sbjct: 301 VIHYQLPKNMESYYQEAGRAGRDGLDSACILLYSSQDVQVQRFLIDQSTGESRFSNELEK 360
Query: 360 LLAAQRYCLLTTC 372
L YC C
Sbjct: 361 LQNMTDYCHTEQC 373
>gi|196043483|ref|ZP_03110721.1| ATP-dependent DNA helicase RecQ [Bacillus cereus 03BB108]
gi|225864791|ref|YP_002750169.1| ATP-dependent DNA helicase RecQ [Bacillus cereus 03BB102]
gi|196025792|gb|EDX64461.1| ATP-dependent DNA helicase RecQ [Bacillus cereus 03BB108]
gi|225790780|gb|ACO30997.1| ATP-dependent DNA helicase RecQ [Bacillus cereus 03BB102]
Length = 705
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 225/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N+L + + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 NTLGINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLMKAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L YA + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSACILLYASQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|334126137|ref|ZP_08500116.1| ATP-dependent helicase RecQ [Enterobacter hormaechei ATCC 49162]
gi|333385797|gb|EGK57023.1| ATP-dependent helicase RecQ [Enterobacter hormaechei ATCC 49162]
Length = 630
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 157/375 (41%), Positives = 224/375 (59%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L + FGY FRP Q+ +I+ ++E RDCLVVM TG GKSLCYQ+P LV +VVSPLI
Sbjct: 37 VLHETFGYQQFRPGQETIIETVLEGRDCLVVMPTGGGKSLCYQVPALVLNGLTVVVSPLI 96
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S QT V TG +LL++ PE+ ++ +F
Sbjct: 97 SLMKDQVDQLLANGVAAACLNSTQTREQQQEVMAGCRTGQIRLLYIAPER--LMLDNFLD 154
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R+DI+
Sbjct: 155 HLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPELPFMALTATADDTTRLDIV 214
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +PY+ ++SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 215 RLLGLNDPYIQVSSFDRPNIRY---MLMEKFKPLDQLLRYVQEQRGKSG--IIYCNSRAK 269
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 270 VEDTAARLQNRGFSAAAYHAGLENHIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 329
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I
Sbjct: 330 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHK 388
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 389 LNAMGAFAEAQTCRR 403
>gi|196032153|ref|ZP_03099567.1| ATP-dependent DNA helicase RecQ [Bacillus cereus W]
gi|228915416|ref|ZP_04079009.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228927868|ref|ZP_04090916.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228934090|ref|ZP_04096931.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228946431|ref|ZP_04108750.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|195994904|gb|EDX58858.1| ATP-dependent DNA helicase RecQ [Bacillus cereus W]
gi|228813235|gb|EEM59537.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228825604|gb|EEM71396.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228831931|gb|EEM77520.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228844359|gb|EEM89417.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 705
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 225/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N+L + + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 NTLGINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLMKAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L YA + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSACILLYASQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|407698409|ref|YP_006823196.1| ATP-dependent DNA helicase [Alteromonas macleodii str. 'Black Sea
11']
gi|407247556|gb|AFT76741.1| ATP-dependent DNA helicase [Alteromonas macleodii str. 'Black Sea
11']
Length = 613
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 157/381 (41%), Positives = 231/381 (60%), Gaps = 23/381 (6%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ LK FGY FR Q +VI ++ E +D LV++ TG GKSLCYQ+P LV TA+VVSPL
Sbjct: 22 TVLKDVFGYDAFRDGQGEVIHQVCEGKDALVLLPTGGGKSLCYQIPALVRQGTAIVVSPL 81
Query: 63 ISLMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLMQDQV LK G+NA +L S A + + + G LL+++PE+ ++ F
Sbjct: 82 ISLMQDQVEQLKALGVNAAYLNSTLEADEQARINDALQAGKLDLLYVSPER--LMQYYFQ 139
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
L A + LFA+DEAHC+S WGHDFR +Y+ L ++++ +P + LTATA + DI
Sbjct: 140 QSLAHADIALFAIDEAHCVSHWGHDFRQDYRALGQIKSRFPSIPVIGLTATADSATQADI 199
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+ L L P V SFDR N+ Y +V+++ ++F D++V + + GS I+YC +
Sbjct: 200 LTQLNLNEPLVYKGSFDRPNIRY--RVMSKYKAF-DQVVAYVKQQ---EGSGIIYCNSRA 253
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+++ L + G + YH M + RE R F+ D+I ++VAT+AFGMGI+K +VR+
Sbjct: 254 KVDDLHAKLFRQGFRCAAYHAGMDNDERELVQRQFLNDKIDIVVATVAFGMGINKSNVRY 313
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYC--GE----SQTENQR 353
V+H+ P+++ESYYQE+GR GRDG+ S L + + A+ + GE +Q E Q+
Sbjct: 314 VVHHDVPRSVESYYQETGRAGRDGLESEALLLFDEKDAARVKQWIEQGEIAERNQIELQK 373
Query: 354 TAIMESLLAAQRYCLLTTCRR 374
A ME+ AQ TCRR
Sbjct: 374 FAAMEAFSEAQ------TCRR 388
>gi|423551448|ref|ZP_17527775.1| ATP-dependent DNA helicase RecQ [Bacillus cereus ISP3191]
gi|401187286|gb|EJQ94359.1| ATP-dependent DNA helicase RecQ [Bacillus cereus ISP3191]
Length = 705
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 225/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N+L + + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 NTLGINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLMKAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L YA + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSACILLYASQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|229156395|ref|ZP_04284489.1| ATP-dependent DNA helicase RecQ [Bacillus cereus ATCC 4342]
gi|228627072|gb|EEK83805.1| ATP-dependent DNA helicase RecQ [Bacillus cereus ATCC 4342]
Length = 705
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 226/373 (60%), Gaps = 13/373 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGS----AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
LM+DQV +L Q GI+A ++ S A+ + +Q A+ G+++LL++ PE+ + + F
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISIAEANQRIQL-AKQGHYKLLYVAPER--LDSMEFVD 125
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDI 179
+L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 126 QLIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDI 185
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
N+L + + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 186 CNTLGINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRK 240
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+
Sbjct: 241 VVDQLYEDLMKAGVSVSKYHAGMSDNDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRY 300
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E
Sbjct: 301 VIHYQLPKNMESYYQEAGRAGRDGLDSACILLYSSQDVQVQRFLIDQSTGESRFSNELEK 360
Query: 360 LLAAQRYCLLTTC 372
L YC C
Sbjct: 361 LQNMTDYCHTEQC 373
>gi|218903941|ref|YP_002451775.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH820]
gi|218536429|gb|ACK88827.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH820]
Length = 705
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 225/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N+L + + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 NTLGINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLMKAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L YA + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSACILLYASQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|47567630|ref|ZP_00238340.1| ATP-dependent DNA helicase RecQ [Bacillus cereus G9241]
gi|47555607|gb|EAL13948.1| ATP-dependent DNA helicase RecQ [Bacillus cereus G9241]
Length = 705
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 226/373 (60%), Gaps = 13/373 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGS----AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
LM+DQV +L Q GI+A ++ S A+ + +Q A+ G+++LL++ PE+ + + F
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISIAEANQRIQL-AKQGHYKLLYVAPER--LDSMEFVD 125
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDI 179
+L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 126 QLIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDI 185
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
N+L + + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 186 CNTLGINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRK 240
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+
Sbjct: 241 VVDQLYEDLMKAGVSVSKYHAGMSDNDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRY 300
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E
Sbjct: 301 VIHYQLPKNMESYYQEAGRAGRDGLDSACILLYSSQDVQVQRFLIDQSTGESRFSNELEK 360
Query: 360 LLAAQRYCLLTTC 372
L YC C
Sbjct: 361 LQNMTDYCHTEQC 373
>gi|118478170|ref|YP_895321.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis str. Al
Hakam]
gi|229185033|ref|ZP_04312223.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BGSC 6E1]
gi|376266680|ref|YP_005119392.1| ATP-dependent DNA helicase RecQ [Bacillus cereus F837/76]
gi|118417395|gb|ABK85814.1| ATP-dependent DNA helicase, RecQ-like protein [Bacillus
thuringiensis str. Al Hakam]
gi|228598508|gb|EEK56138.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BGSC 6E1]
gi|364512480|gb|AEW55879.1| ATP-dependent DNA helicase RecQ [Bacillus cereus F837/76]
Length = 705
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 225/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N+L + + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 NTLGINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLMKAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L YA + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSACILLYASQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|46143327|ref|ZP_00135472.2| COG0514: Superfamily II DNA helicase [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
Length = 604
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 162/371 (43%), Positives = 218/371 (58%), Gaps = 14/371 (3%)
Query: 9 FGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQD 68
FGY FR Q++VI ++ RDCLV+M TG GKSLCYQ+P L LV+SPLISLM+D
Sbjct: 18 FGYQSFRHGQQEVIDSVLAGRDCLVIMTTGGGKSLCYQVPALCLDGITLVISPLISLMKD 77
Query: 69 QVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKA 125
QV L GI A FL S QT V+ KA +G +LL+++PEK ++ F+ +
Sbjct: 78 QVDQLLTNGIEAGFLNSTQTFEEQQLVEQKALSGQLKLLYLSPEK--VMTQGFFHFISLC 135
Query: 126 GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKL 185
+ L AVDEAHC+S+WGHDFR EY L LR VP +ALTATA R DI+ L+L
Sbjct: 136 KISLIAVDEAHCVSQWGHDFRPEYTLLGNLRDTFPNVPLMALTATADPTTRHDILQHLRL 195
Query: 186 KNPYVTIASFDRKNLFYGVKVINRGQSF--VDELVQEILKSVAGAGSIIVYCMTIKDVEE 243
+P+ + SFDR N+ Y V+ + F V++L + I K +G IVYC + K VEE
Sbjct: 196 TDPHTYLGSFDRPNIRYTVQ-----EKFKPVEQLAKFISKQQGKSG--IVYCNSRKKVEE 248
Query: 244 ISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHY 303
I++ L + YH M + RE F RD I+V+VAT+AFGMGI+K +VR V+H+
Sbjct: 249 ITEKLASRKISVMGYHAGMSVQQRETVQNAFQRDNIQVVVATIAFGMGINKSNVRFVVHF 308
Query: 304 GCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLLAA 363
P+++ESYYQE+GR GRD + S L+Y +++A E QR L A
Sbjct: 309 DLPRSIESYYQETGRAGRDDLPSEAVLFYDPADYAWLQKVLLEEPESEQRDIKQHKLQAI 368
Query: 364 QRYCLLTTCRR 374
+ TCRR
Sbjct: 369 GAFAESQTCRR 379
>gi|218261590|ref|ZP_03476344.1| hypothetical protein PRABACTJOHN_02012 [Parabacteroides johnsonii
DSM 18315]
gi|423343392|ref|ZP_17321105.1| ATP-dependent DNA helicase RecQ [Parabacteroides johnsonii
CL02T12C29]
gi|218223945|gb|EEC96595.1| hypothetical protein PRABACTJOHN_02012 [Parabacteroides johnsonii
DSM 18315]
gi|409215467|gb|EKN08467.1| ATP-dependent DNA helicase RecQ [Parabacteroides johnsonii
CL02T12C29]
Length = 609
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 160/373 (42%), Positives = 221/373 (59%), Gaps = 11/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK++FGY+ FRP Q ++IQRI++K D LV+M TG GKS+C+QLP + TA+VVSPLI+
Sbjct: 8 LKRFFGYTTFRPLQAEIIQRILQKEDSLVLMPTGGGKSICFQLPAIYMPGTAIVVSPLIA 67
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L GI A L S + V+ G +LL+++PE II W
Sbjct: 68 LMKDQVEGLIANGIPASTLNSMMPEEERHRVRQLCIQGKVKLLYISPE--GIISELHWL- 124
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + L A+DEAHCIS WGHDFR EY QL L+ VP VALTATA + R DI+N
Sbjct: 125 LPRIDISLIAIDEAHCISHWGHDFRPEYTQLSVLKENFPKVPIVALTATADKITRTDILN 184
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
LKL++P I+SFDR NL ++ + + +V I + +G I+YCM+
Sbjct: 185 QLKLRDPKTFISSFDRPNLSLTIRRGLSKKEKIAAIVHFINRHHRQSG--IIYCMSRNST 242
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E + + L + ++A YH + RE+A FI D + V+ AT+AFGMGIDK +VR VI
Sbjct: 243 ESLVEELSEYSIRAVAYHAGLSPDKREKAQDDFINDRVNVVCATVAFGMGIDKSNVRWVI 302
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
HY P ++E+YYQE GR GRDG+ S L+Y+ + + ES Q+ ++ L
Sbjct: 303 HYNMPSSIENYYQEIGRAGRDGMKSDTLLFYSVGDILLLRRFAEES---GQKDVSLQKLN 359
Query: 362 AAQRYCLLTTCRR 374
+RYC CRR
Sbjct: 360 RMRRYCEADICRR 372
>gi|421847362|ref|ZP_16280501.1| ATP-dependent DNA helicase RecQ [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|411771312|gb|EKS55013.1| ATP-dependent DNA helicase RecQ [Citrobacter freundii ATCC 8090 =
MTCC 1658]
Length = 609
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 158/375 (42%), Positives = 224/375 (59%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLI
Sbjct: 16 VLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLI 75
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q+ V TG +LL++ PE+ ++ +F
Sbjct: 76 SLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQIRLLYIAPER--LMLDNFLE 133
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PFVALTATA E R+DI+
Sbjct: 134 HLAHWNPMLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFVALTATADETTRLDIV 193
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 194 RLLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 248
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ AG YH + + R E F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 249 VEDTAARLQSRGISAGAYHAGLENAVRAEVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 308
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I
Sbjct: 309 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPAGQLLDIERHK 367
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 368 LNAMGAFAEAQTCRR 382
>gi|423655607|ref|ZP_17630906.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD200]
gi|401292875|gb|EJR98529.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD200]
Length = 705
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 226/373 (60%), Gaps = 13/373 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGS----AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
LM+DQV +L Q GI+A ++ S A+ + +Q A+ G+++LL++ PE+ + + F
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISIAEANQRIQL-AKQGHYKLLYVAPER--LDSMEFVD 125
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDI 179
+L+ + + A+DEAHCIS+WGHDFR Y + + +L P V ALTATAT +VR DI
Sbjct: 126 QLIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHHILDYLPEKPLVLALTATATPQVRDDI 185
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
N+L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 186 CNTLEINKENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRK 240
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+
Sbjct: 241 VVDQLYEDLMKAGVSVSKYHAGMSDSDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRY 300
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E
Sbjct: 301 VIHYQLPKNMESYYQEAGRAGRDGLDSTCILLYSSQDVQVQRFLIDQSTGESRFSNELEK 360
Query: 360 LLAAQRYCLLTTC 372
L YC C
Sbjct: 361 LQNMTDYCHTEQC 373
>gi|229190913|ref|ZP_04317904.1| ATP-dependent DNA helicase RecQ [Bacillus cereus ATCC 10876]
gi|228592581|gb|EEK50409.1| ATP-dependent DNA helicase RecQ [Bacillus cereus ATCC 10876]
Length = 705
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 227/373 (60%), Gaps = 13/373 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGS----AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
LM+DQV +L Q GI+A ++ S A+ + +Q A+ G+++LL++ PE+ + + F
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISIAEANQRIQL-AKQGHYKLLYVAPER--LDSMEFVD 125
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDI 179
+L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 126 QLIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDI 185
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
N+L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 186 CNTLEINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRK 240
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+
Sbjct: 241 VVDQLYEDLMKAGVSVSKYHAGMSDIDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRY 300
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E
Sbjct: 301 VIHYQLPKNMESYYQEAGRAGRDGLDSTCILLYSSQDVQVQRFLIDQSTGESRFSNELEK 360
Query: 360 LLAAQRYCLLTTC 372
L YC C
Sbjct: 361 LQNMTDYCHTEQC 373
>gi|49479115|ref|YP_036901.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|301054339|ref|YP_003792550.1| ATP-dependent DNA helicase RecQ [Bacillus cereus biovar anthracis
str. CI]
gi|49330671|gb|AAT61317.1| ATP-dependent DNA helicase (RecQ) [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|300376508|gb|ADK05412.1| ATP-dependent DNA helicase RecQ [Bacillus cereus biovar anthracis
str. CI]
Length = 705
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 225/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N+L + + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 NTLGINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLMKAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L YA + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSACILLYASQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|228921484|ref|ZP_04084807.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|423581092|ref|ZP_17557203.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD014]
gi|423636460|ref|ZP_17612113.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD156]
gi|228838257|gb|EEM83575.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|401215857|gb|EJR22572.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD014]
gi|401274811|gb|EJR80780.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD156]
Length = 705
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 227/373 (60%), Gaps = 13/373 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGS----AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
LM+DQV +L Q GI+A ++ S A+ + +Q A+ G+++LL++ PE+ + + F
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISIAEANQRIQL-AKQGHYKLLYVAPER--LDSMEFVD 125
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDI 179
+L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 126 QLIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDI 185
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
N+L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 186 CNTLEINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRK 240
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+
Sbjct: 241 VVDQLYEDLMKAGVSVSKYHAGMSDIDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRY 300
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E
Sbjct: 301 VIHYQLPKNMESYYQEAGRAGRDGLDSTCILLYSSQDVQVQRFLIDQSTGESRFSNELEK 360
Query: 360 LLAAQRYCLLTTC 372
L YC C
Sbjct: 361 LQNMTDYCHTEQC 373
>gi|148827918|ref|YP_001292671.1| frataxin-like protein [Haemophilus influenzae PittGG]
gi|148719160|gb|ABR00288.1| frataxin-like protein [Haemophilus influenzae PittGG]
Length = 619
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 161/376 (42%), Positives = 224/376 (59%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+S LK FGY FR Q++VI + +D LVVMATG+GKSLCYQ+P L LV+SP
Sbjct: 17 LSVLKSVFGYQSFRKGQEEVINATLNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISP 76
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ GI A+FL S+QT VQ K +G +LL+++PEK ++ SF
Sbjct: 77 LISLMKDQVDQLQANGIEADFLNSSQTLAQQQQVQNKLISGQLKLLYVSPEK--VMTNSF 134
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + + VC A+DEAHCIS+WGHDFR EY QL L+ P +ALTATA + D
Sbjct: 135 FQLISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATADYATQQD 194
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L LKN + I SFDR N+ Y + +++L + +L +G I+YC +
Sbjct: 195 ILRHLNLKNLHKYIGSFDRPNIRY---TLEEKYKPMEQLTRFVLAQKGKSG--IIYCNSR 249
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I+++L+ GV A YH M + RE + F RD ++V+VAT+AFGMGI+K +VR
Sbjct: 250 NKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFGMGINKSNVR 309
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V H+ P+++ESYYQE+GR GRD + + L+Y +++A E QR
Sbjct: 310 FVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILFEKPETPQRQIEQH 369
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 370 KLEAIGEFAESQTCRR 385
>gi|218232745|ref|YP_002367534.1| ATP-dependent DNA helicase RecQ [Bacillus cereus B4264]
gi|218160702|gb|ACK60694.1| ATP-dependent DNA helicase RecQ [Bacillus cereus B4264]
Length = 705
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 227/373 (60%), Gaps = 13/373 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGS----AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
LM+DQV +L Q GI+A ++ S A+ + +Q A+ G+++LL++ PE+ + + F
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISIAEANQRIQL-AKQGHYKLLYVAPER--LDSMEFVD 125
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDI 179
+L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 126 QLIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDI 185
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
N+L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 186 CNTLEINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRK 240
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+
Sbjct: 241 VVDQLYEDLMKAGVSVSKYHAGMSDIDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRY 300
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E
Sbjct: 301 VIHYQLPKNMESYYQEAGRAGRDGLDSTCILLYSSQDVQVQRFLIDQSTGESRFSNELEK 360
Query: 360 LLAAQRYCLLTTC 372
L YC C
Sbjct: 361 LQNMTDYCHTEQC 373
>gi|401765702|ref|YP_006580709.1| ATP-dependent DNA helicase RecQ [Enterobacter cloacae subsp.
cloacae ENHKU01]
gi|400177236|gb|AFP72085.1| ATP-dependent DNA helicase RecQ [Enterobacter cloacae subsp.
cloacae ENHKU01]
Length = 609
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 157/374 (41%), Positives = 224/374 (59%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L + FGY FRP Q+ +I+ ++E RDCLVVM TG GKSLCYQ+P LV +VVSPLIS
Sbjct: 17 LHETFGYQQFRPGQETIIETVLEGRDCLVVMPTGGGKSLCYQVPALVLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S QT V TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLLANGVAAACLNSTQTREQQQEVMAGCRTGQVRLLYIAPER--LMLDNFLDH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R+DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPELPFMALTATADDTTRLDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +PY+ ++SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPYIQVSSFDRPNIRY---MLMEKFKPLDQLLRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQNRGFSAAAYHAGLENHIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|423469086|ref|ZP_17445830.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG6O-2]
gi|402440437|gb|EJV72430.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG6O-2]
Length = 705
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 226/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLIQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N+L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 NTLEINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDEI VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLGKAGVSVSKYHAGMSDHDRNEQQELFLRDEISVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSECILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|229122366|ref|ZP_04251580.1| ATP-dependent DNA helicase RecQ [Bacillus cereus 95/8201]
gi|228661215|gb|EEL16841.1| ATP-dependent DNA helicase RecQ [Bacillus cereus 95/8201]
Length = 705
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 225/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N+L + + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 NTLGINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLMKAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L YA + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSACILLYASQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|226227108|ref|YP_002761214.1| ATP-dependent DNA helicase RecQ [Gemmatimonas aurantiaca T-27]
gi|226090299|dbj|BAH38744.1| ATP-dependent DNA helicase RecQ [Gemmatimonas aurantiaca T-27]
Length = 598
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 157/352 (44%), Positives = 211/352 (59%), Gaps = 8/352 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+TL +YFGY FRP Q ++ ++ RD L+V+ TG GKSLC+Q+P LV +V+SPL
Sbjct: 19 ATLLRYFGYPDFRPPQIRAVEAVLSGRDALIVLPTGGGKSLCFQVPALVRDGLTIVISPL 78
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSV---QTKAETGYFQLLFMTPEKACIIPISFW 119
ISLM+DQV +L +RGI A ++ S + S V +A G +LL++ PE+ +
Sbjct: 79 ISLMKDQVETLARRGIEAAYINSTLSVSEVADRMARARDGSLRLLYLAPER--MEAGRML 136
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L GV L VDEAHCISEWGHDFR Y+++ +R L VALTATAT +VR DI
Sbjct: 137 QQLRTIGVVLLTVDEAHCISEWGHDFRPSYRRIGYIREQLGSPQTVALTATATPEVRRDI 196
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
L L+ P V + FDR NL Y V V R Q D E L+ GA +VY T K
Sbjct: 197 ARQLLLRQPEVVVGGFDRTNLTYHV-VPTRTQRDKDLTAIEWLRDAPGAA--VVYTPTRK 253
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
VE ++ L + +KA YHG + + R+ A F+ + RV+VAT AFGMGIDKPDVR
Sbjct: 254 AVERVTAVLLRGRIKATAYHGGLDDRQRQRAQDAFMEERSRVIVATSAFGMGIDKPDVRL 313
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTEN 351
V+H+ P TLESYYQE+GR GRDG AS C L ++ + +++ + E
Sbjct: 314 VVHHSMPGTLESYYQEAGRAGRDGQASTCVLLHSYPDRFTHEYFINSTHAER 365
>gi|228959047|ref|ZP_04120748.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|423627884|ref|ZP_17603633.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD154]
gi|228800708|gb|EEM47624.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|401271181|gb|EJR77199.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD154]
Length = 705
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 227/373 (60%), Gaps = 13/373 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGS----AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
LM+DQV +L Q GI+A ++ S A+ + +Q A+ G+++LL++ PE+ + + F
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISIAEANQRIQL-AKQGHYKLLYVAPER--LDSMEFVD 125
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDI 179
+L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 126 QLIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDI 185
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
N+L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 186 CNTLEINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRK 240
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+
Sbjct: 241 VVDQLYEDLMKAGVSVSKYHAGMSDIDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRY 300
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E
Sbjct: 301 VIHYQLPKNMESYYQEAGRAGRDGLDSTCILLYSSQDVQVQRFLIDQSTGESRFSNELEK 360
Query: 360 LLAAQRYCLLTTC 372
L YC C
Sbjct: 361 LQNMTDYCHTEQC 373
>gi|190150443|ref|YP_001968968.1| ATP-dependent DNA helicase RecQ [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|307263787|ref|ZP_07545393.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|189915574|gb|ACE61826.1| ATP-dependent DNA helicase RecQ [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|306870908|gb|EFN02646.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 602
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 162/375 (43%), Positives = 218/375 (58%), Gaps = 14/375 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L FGY FR Q++VI ++ RDCLV+M TG GKSLCYQ+P L LV+SPLIS
Sbjct: 12 LNNVFGYQSFRHGQQEVIDSVLAGRDCLVIMTTGGGKSLCYQVPALCLDGITLVISPLIS 71
Query: 65 LMQDQVMSLKQRGINAEFLGSAQ---TDSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L GI A FL S Q V+ KA +G +LL+++PEK ++ F+
Sbjct: 72 LMKDQVDQLLTNGIEAGFLNSTQIFEEQQLVEQKALSGQLKLLYLSPEK--VMTQGFFHF 129
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
+ + L AVDEAHC+S+WGHDFR EY L LR VP +ALTATA R DI+
Sbjct: 130 ISLCKISLIAVDEAHCVSQWGHDFRPEYTLLGNLRDTFPNVPLMALTATADPTTRHDILQ 189
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSF--VDELVQEILKSVAGAGSIIVYCMTIK 239
L+L +P+ + SFDR N+ Y V+ + F V++L + I K +G IVYC + K
Sbjct: 190 HLRLTDPHTYLGSFDRPNIRYTVQ-----EKFKPVEQLAKFISKQQGKSG--IVYCNSRK 242
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
VEEI++ L + YH M + RE F RD I+V+VAT+AFGMGI+K +VR
Sbjct: 243 KVEEITEKLASRKISVMGYHAGMSVQQRETVQNAFQRDNIQVVVATIAFGMGINKSNVRF 302
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V+H+ P+++ESYYQE+GR GRD + S L+Y +++A E QR
Sbjct: 303 VVHFDLPRSIESYYQETGRAGRDDLPSEAVLFYDPADYAWLQKVLLEEPESEQRDIKQHK 362
Query: 360 LLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 363 LQAIGAFAESQTCRR 377
>gi|229110265|ref|ZP_04239839.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock1-15]
gi|423586762|ref|ZP_17562849.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD045]
gi|423648707|ref|ZP_17624277.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD169]
gi|228673251|gb|EEL28521.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock1-15]
gi|401230280|gb|EJR36788.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD045]
gi|401284205|gb|EJR90071.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD169]
Length = 705
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 227/373 (60%), Gaps = 13/373 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGS----AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
LM+DQV +L Q GI+A ++ S A+ + +Q A+ G+++LL++ PE+ + + F
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISIAEANQRIQL-AKQGHYKLLYVAPER--LDSMEFVD 125
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDI 179
+L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 126 QLIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDI 185
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
N+L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 186 CNTLEINKENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRK 240
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+
Sbjct: 241 VVDQLYEDLMKAGVSVSKYHAGMSDIDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRY 300
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E
Sbjct: 301 VIHYQLPKNMESYYQEAGRAGRDGLDSTCILLYSSQDVQVQRFLIDQSTGESRFSNELEK 360
Query: 360 LLAAQRYCLLTTC 372
L YC C
Sbjct: 361 LQNMTDYCHTEQC 373
>gi|423642180|ref|ZP_17617798.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD166]
gi|401277123|gb|EJR83067.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD166]
Length = 705
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 227/373 (60%), Gaps = 13/373 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGS----AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
LM+DQV +L Q GI+A ++ S A+ + +Q A+ G+++LL++ PE+ + + F
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISIAEANQRIQL-AKQGHYKLLYVAPER--LDSMEFVD 125
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDI 179
+L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 126 QLIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDI 185
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
N+L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 186 CNTLEINKENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRK 240
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+
Sbjct: 241 VVDQLYEDLMKAGVSVSKYHAGMSDIDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRY 300
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E
Sbjct: 301 VIHYQLPKNMESYYQEAGRAGRDGLDSTCILLYSSQDVQVQRFLIDQSTGESRFSNELEK 360
Query: 360 LLAAQRYCLLTTC 372
L YC C
Sbjct: 361 LQNMTDYCHTEQC 373
>gi|423453794|ref|ZP_17430647.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG5X1-1]
gi|401137476|gb|EJQ45057.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG5X1-1]
Length = 705
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 226/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLIQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N+L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 NTLEINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDEI VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLGKAGVSVSKYHAGMSDHDRNEQQELFLRDEISVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSECILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|319775328|ref|YP_004137816.1| ATP-dependent DNA helicase [Haemophilus influenzae F3047]
gi|319897768|ref|YP_004135965.1| ATP-dependent DNA helicase [Haemophilus influenzae F3031]
gi|329122676|ref|ZP_08251254.1| ATP-dependent helicase RecQ [Haemophilus aegyptius ATCC 11116]
gi|317433274|emb|CBY81649.1| ATP-dependent DNA helicase [Haemophilus influenzae F3031]
gi|317449919|emb|CBY86131.1| ATP-dependent DNA helicase [Haemophilus influenzae F3047]
gi|327472550|gb|EGF17980.1| ATP-dependent helicase RecQ [Haemophilus aegyptius ATCC 11116]
Length = 619
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 161/376 (42%), Positives = 224/376 (59%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+S LK FGY FR Q++VI + +D LVVMATG+GKSLCYQ+P L LV+SP
Sbjct: 17 LSVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISP 76
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ GI A+FL S+QT VQ K +G +LL+++PEK ++ SF
Sbjct: 77 LISLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEK--VMTNSF 134
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + + VC A+DEAHCIS+WGHDFR EY QL L+ P +ALTATA + D
Sbjct: 135 FQLISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATADYATQQD 194
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L LKN + I SFDR N+ Y + +++L + +L +G I+YC +
Sbjct: 195 ILRHLNLKNLHKYIGSFDRPNIRY---TLEEKYKPMEQLTRFVLAQKGKSG--IIYCNSR 249
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I+++L+ GV A YH M + RE + F RD ++V+VAT+AFGMGI+K +VR
Sbjct: 250 NKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFGMGINKSNVR 309
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V H+ P+++ESYYQE+GR GRD + + L+Y +++A E QR
Sbjct: 310 FVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILFEKPETPQRQIEQH 369
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 370 KLEAIGEFAESQTCRR 385
>gi|145628391|ref|ZP_01784192.1| organic solvent tolerance protein [Haemophilus influenzae 22.1-21]
gi|145638475|ref|ZP_01794085.1| organic solvent tolerance protein [Haemophilus influenzae PittII]
gi|260583174|ref|ZP_05850954.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae NT127]
gi|386266538|ref|YP_005830030.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae R2846]
gi|144980166|gb|EDJ89825.1| organic solvent tolerance protein [Haemophilus influenzae 22.1-21]
gi|145272804|gb|EDK12711.1| organic solvent tolerance protein [Haemophilus influenzae PittII]
gi|260093792|gb|EEW77700.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae NT127]
gi|309751607|gb|ADO81591.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae R2866]
gi|309973774|gb|ADO96975.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae R2846]
Length = 619
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 161/376 (42%), Positives = 224/376 (59%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+S LK FGY FR Q++VI + +D LVVMATG+GKSLCYQ+P L LV+SP
Sbjct: 17 LSVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISP 76
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ GI A+FL S+QT VQ K +G +LL+++PEK ++ SF
Sbjct: 77 LISLMKDQVDQLQANGIEADFLNSSQTLAQQQQVQNKLISGQLKLLYVSPEK--VMTNSF 134
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + + VC A+DEAHCIS+WGHDFR EY QL L+ P +ALTATA + D
Sbjct: 135 FQLISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATADYATQQD 194
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L LKN + I SFDR N+ Y + +++L + +L +G I+YC +
Sbjct: 195 ILRHLNLKNLHKYIGSFDRPNIRY---TLEEKYKPMEQLTRFVLAQKGKSG--IIYCNSR 249
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I+++L+ GV A YH M + RE + F RD ++V+VAT+AFGMGI+K +VR
Sbjct: 250 NKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFGMGINKSNVR 309
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V H+ P+++ESYYQE+GR GRD + + L+Y +++A E QR
Sbjct: 310 FVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILFEKPETPQRQIEQH 369
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 370 KLEAIGEFAESQTCRR 385
>gi|145640806|ref|ZP_01796388.1| frataxin-like protein [Haemophilus influenzae R3021]
gi|145274320|gb|EDK14184.1| frataxin-like protein [Haemophilus influenzae 22.4-21]
Length = 619
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 161/376 (42%), Positives = 224/376 (59%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+S LK FGY FR Q++VI + +D LVVMATG+GKSLCYQ+P L LV+SP
Sbjct: 17 LSVLKSIFGYQSFRKGQEEVINATLNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISP 76
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ GI A+FL S+QT VQ K +G +LL+++PEK ++ SF
Sbjct: 77 LISLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEK--VMTNSF 134
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + + VC A+DEAHCIS+WGHDFR EY QL L+ P +ALTATA + D
Sbjct: 135 FQLISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATADYATQQD 194
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L LKN + I SFDR N+ Y + +++L + +L +G I+YC +
Sbjct: 195 ILRHLNLKNLHKYIGSFDRPNIRY---TLEEKYKPMEQLTRFVLAQKGKSG--IIYCNSR 249
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I+++L+ GV A YH M + RE + F RD ++V+VAT+AFGMGI+K +VR
Sbjct: 250 NKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFGMGINKSNVR 309
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V H+ P+++ESYYQE+GR GRD + + L+Y +++A E QR
Sbjct: 310 FVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYESADYAWLQKILLEKPETPQRQIEQH 369
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 370 KLEAIGEFAESQTCRR 385
>gi|229845776|ref|ZP_04465888.1| frataxin-like protein [Haemophilus influenzae 7P49H1]
gi|229810780|gb|EEP46497.1| frataxin-like protein [Haemophilus influenzae 7P49H1]
Length = 619
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 161/376 (42%), Positives = 224/376 (59%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+S LK FGY FR Q++VI + +D LVVMATG+GKSLCYQ+P L LV+SP
Sbjct: 17 LSVLKSVFGYQSFRKGQEEVINATLNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISP 76
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ GI A+FL S+QT VQ K +G +LL+++PEK ++ SF
Sbjct: 77 LISLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEK--VMTNSF 134
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + + VC A+DEAHCIS+WGHDFR EY QL L+ P +ALTATA + D
Sbjct: 135 FQLISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATADYATQQD 194
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L LKN + I SFDR N+ Y + +++L + +L +G I+YC +
Sbjct: 195 ILRHLNLKNLHKYIGSFDRPNIRY---TLEEKYKPMEQLTRFVLAQKGKSG--IIYCNSR 249
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I+++L+ GV A YH M + RE + F RD ++V+VAT+AFGMGI+K +VR
Sbjct: 250 NKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFGMGINKSNVR 309
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V H+ P+++ESYYQE+GR GRD + + L+Y +++A E QR
Sbjct: 310 FVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILFEKPETPQRQIEQH 369
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 370 KLEAIGEFAESQTCRR 385
>gi|189499066|ref|YP_001958536.1| ATP-dependent DNA helicase RecQ [Chlorobium phaeobacteroides BS1]
gi|189494507|gb|ACE03055.1| ATP-dependent DNA helicase RecQ [Chlorobium phaeobacteroides BS1]
Length = 674
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 160/378 (42%), Positives = 225/378 (59%), Gaps = 12/378 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ TL K FG+ FRP Q+++++ I++ RD VM TG GKSLCYQLP ++ T +V+S
Sbjct: 68 LFDTLHKVFGFHSFRPNQENIVRAILDGRDVFAVMPTGGGKSLCYQLPAVLLSGTCVVIS 127
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPIS 117
PLI+LM+DQV + GI A +L S+ + +SVQ + + LL++ PE+ +
Sbjct: 128 PLIALMKDQVDGARANGIRAAYLNSSLSPEEQASVQQELLSDSLDLLYVAPER---FRLE 184
Query: 118 FWSKLL-KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
+ KLL + + + VDEAHCISEWGHDFR +Y L L GVP A TATAT KV+
Sbjct: 185 HFQKLLGEVNISMAVVDEAHCISEWGHDFRPDYLLLSALVQLFPGVPVAAFTATATLKVQ 244
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DI++ L L++P + ASFDR NLFY ++ + +LV ILKS G II Y
Sbjct: 245 QDILHKLSLRDPLLVRASFDRSNLFYDIRFKENANA---QLVS-ILKSNPGQAGII-YRT 299
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K V E + LK G +A YH + + R+ FIRDE ++VAT+AFGMGIDK +
Sbjct: 300 SRKSVNETAALLKAKGFRALPYHAGLSDEERQRNQEAFIRDEADIIVATIAFGMGIDKSN 359
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
+R VIH PK++ESYYQE+GR GRDG + C L +++S+ K F+ E +R
Sbjct: 360 IRLVIHADLPKSIESYYQETGRAGRDGEPARCTLLFSQSDIPKIRFFIDTIVDETERGKA 419
Query: 357 MESLLAAQRYCLLTTCRR 374
+ SL + + CRR
Sbjct: 420 LSSLQKVISFVSTSVCRR 437
>gi|52142697|ref|YP_084132.1| ATP-dependent DNA helicase Q [Bacillus cereus E33L]
gi|51976166|gb|AAU17716.1| ATP-dependent DNA helicase Q [Bacillus cereus E33L]
Length = 705
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 225/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N+L + + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 NTLGINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLMKSGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L YA + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSACILLYASQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|423575539|ref|ZP_17551658.1| ATP-dependent DNA helicase RecQ [Bacillus cereus MSX-D12]
gi|401208864|gb|EJR15624.1| ATP-dependent DNA helicase RecQ [Bacillus cereus MSX-D12]
Length = 705
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 153/372 (41%), Positives = 225/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYVHIHRILDYLPEKPLVLALTATATPQVRDDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N+L + + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 NTLGINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLMKAGVSVSKYHAGMSDNDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSACILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|378696929|ref|YP_005178887.1| ATP-dependent DNA helicase [Haemophilus influenzae 10810]
gi|301169448|emb|CBW29048.1| ATP-dependent DNA helicase [Haemophilus influenzae 10810]
Length = 619
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 161/376 (42%), Positives = 224/376 (59%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+S LK FGY FR Q++VI + +D LVVMATG+GKSLCYQ+P L LV+SP
Sbjct: 17 LSVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISP 76
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ GI A+FL S+QT VQ K +G +LL+++PEK ++ SF
Sbjct: 77 LISLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEK--VMTNSF 134
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + + VC A+DEAHCIS+WGHDFR EY QL L+ P +ALTATA + D
Sbjct: 135 FQLISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATADYATQQD 194
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L LKN + I SFDR N+ Y + +++L + +L +G I+YC +
Sbjct: 195 ILRHLNLKNLHKYIGSFDRPNIRY---TLEEKYKPMEQLTRFVLAQKGKSG--IIYCNSR 249
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I+++L+ GV A YH M + RE + F RD ++V+VAT+AFGMGI+K +VR
Sbjct: 250 NKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFGMGINKSNVR 309
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V H+ P+++ESYYQE+GR GRD + + L+Y +++A E QR
Sbjct: 310 FVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILFEKPETPQRQIEQH 369
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 370 KLEAIGEFAESQTCRR 385
>gi|432566205|ref|ZP_19802760.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE51]
gi|431089461|gb|ELD95275.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE51]
Length = 611
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 157/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR VI
Sbjct: 252 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVI 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|418720023|ref|ZP_13279221.1| ATP-dependent DNA helicase, RecQ family [Leptospira borgpetersenii
str. UI 09149]
gi|418738459|ref|ZP_13294854.1| ATP-dependent DNA helicase, RecQ family [Leptospira borgpetersenii
serovar Castellonis str. 200801910]
gi|421095556|ref|ZP_15556269.1| ATP-dependent DNA helicase, RecQ family [Leptospira borgpetersenii
str. 200801926]
gi|410362266|gb|EKP13306.1| ATP-dependent DNA helicase, RecQ family [Leptospira borgpetersenii
str. 200801926]
gi|410743001|gb|EKQ91744.1| ATP-dependent DNA helicase, RecQ family [Leptospira borgpetersenii
str. UI 09149]
gi|410745952|gb|EKQ98860.1| ATP-dependent DNA helicase, RecQ family [Leptospira borgpetersenii
serovar Castellonis str. 200801910]
Length = 621
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 165/383 (43%), Positives = 237/383 (61%), Gaps = 15/383 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKT-ALVV 59
+ S+LK+ +G S FR QK+ I+ ++ +D LV++ TG GKSL YQLP ++ + LV+
Sbjct: 12 LESSLKEIWGMSRFRIGQKESIESVLGGKDTLVILPTGGGKSLIYQLPAVLDRSSLTLVI 71
Query: 60 SPLISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPI 116
SPLI+LM+DQV SLK +GI AE+ S Q D + ++A TG ++L+++PEKA +
Sbjct: 72 SPLIALMKDQVDSLKAKGIAAEYCNSTQDDLEQLRILSRASTGKIRILYLSPEKA--LSR 129
Query: 117 SFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR-TFLLGVPFVALTATATEKV 175
+ L K +C AVDEAHC+S+WGHDFR EY++L +LR + +P VALTATAT +V
Sbjct: 130 QIFEILPKLPLCRIAVDEAHCVSQWGHDFRPEYRKLYELRDKYHHQIPIVALTATATPRV 189
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILK---SVAGAGSII 232
DI NSL LKNP + SF R+NL + V+ S +EL++ +++ +G I
Sbjct: 190 IQDISNSLGLKNPTLIKGSFYRENLNFCVRFPQNETSKENELLKLLIRGNFQKTESGKAI 249
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
+YC T + VE I LK+ G K G YH +RE+ + + V+VAT AFGMG+
Sbjct: 250 IYCATRQKVESIYNFLKKNGFKVGKYHAGRTDSSREKTQNGYNIGKTNVLVATNAFGMGL 309
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ 352
D PDVR ++HY P +LESYYQE+GR GRDG +S C L+Y S+ +F G+ EN
Sbjct: 310 DNPDVRLIVHYQIPASLESYYQEAGRAGRDGKSSNCILFYHPSDLVTQNFIIGK---ENN 366
Query: 353 RTAIMESLLA-AQRYCLLTTCRR 374
R E+LL+ + Y + CR+
Sbjct: 367 RKG-GETLLSFVKEYAISNRCRQ 388
>gi|423559544|ref|ZP_17535846.1| ATP-dependent DNA helicase RecQ [Bacillus cereus MC67]
gi|401188048|gb|EJQ95117.1| ATP-dependent DNA helicase RecQ [Bacillus cereus MC67]
Length = 705
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 226/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLIQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N+L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 NTLEINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDEI VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLGKAGVSVSKYHAGMSDHDRNEQQELFLRDEISVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSECILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|407790669|ref|ZP_11137761.1| ATP-dependent DNA helicase RecQ [Gallaecimonas xiamenensis 3-C-1]
gi|407203006|gb|EKE72994.1| ATP-dependent DNA helicase RecQ [Gallaecimonas xiamenensis 3-C-1]
Length = 607
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 157/375 (41%), Positives = 222/375 (59%), Gaps = 10/375 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
S L FGY FRP Q+ V+ ++ RD LV+M TG GKSLCYQ+P LV TA+V+SPL
Sbjct: 17 SVLASVFGYDQFRPGQQAVVDAVVAGRDALVIMPTGGGKSLCYQVPALVLPGTAIVISPL 76
Query: 63 ISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLM+DQV L G+ A +L SA V + G LL+++PE+ + F
Sbjct: 77 ISLMKDQVDQLLAMGVRAAYLNSALPRDQQWQVLNQLHHGELDLLYVSPER--LSQPDFQ 134
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+LL+ + LFAVDEAHCIS WGHDFR EY L +L+ VP +ALTATA + R DI
Sbjct: 135 QRLLEIPISLFAVDEAHCISSWGHDFRPEYMALGQLKRHFPQVPLMALTATADKATRQDI 194
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
L L +PY ++SFDR N+ Y V+ + + +++L+Q + +G I+Y + K
Sbjct: 195 QQRLGLDDPYFNLSSFDRPNIRY--LVVEKFKP-INQLLQYLEGQRGQSG--IIYAGSRK 249
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V++I++ L+ G A YH + + R+ F +DE+ ++VAT+AFGMGI+KPDVR
Sbjct: 250 RVDDIAQKLRGQGFNAAGYHAGLSNDERQFVQDAFQKDEVDIVVATVAFGMGINKPDVRF 309
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V H+ PK +ESYYQE+GR GRDG+ S W+ + + A+ S+ E Q+ +
Sbjct: 310 VAHFDLPKNIESYYQETGRAGRDGLPSEAWMLFEPGDVARVRSLIELSENEAQQKVELMK 369
Query: 360 LLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 370 LNAMAGFAEGLTCRR 384
>gi|16272669|ref|NP_438887.1| ATP-dependent DNA helicase [Haemophilus influenzae Rd KW20]
gi|260579821|ref|ZP_05847651.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae RdAW]
gi|2500112|sp|P71359.1|RECQ_HAEIN RecName: Full=ATP-dependent DNA helicase RecQ
gi|1573732|gb|AAC22387.1| ATP-dependent DNA helicase (recQ) [Haemophilus influenzae Rd KW20]
gi|260093105|gb|EEW77038.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae RdAW]
Length = 619
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 161/376 (42%), Positives = 224/376 (59%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+S LK FGY FR Q++VI + +D LVVMATG+GKSLCYQ+P L LV+SP
Sbjct: 17 LSVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISP 76
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ GI A+FL S+QT VQ K +G +LL+++PEK ++ SF
Sbjct: 77 LISLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEK--VMTNSF 134
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + + VC A+DEAHCIS+WGHDFR EY QL L+ P +ALTATA + D
Sbjct: 135 FQLISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATADYATQQD 194
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L LKN + I SFDR N+ Y + +++L + +L +G I+YC +
Sbjct: 195 ILRHLNLKNLHKYIGSFDRPNIRY---TLEEKYKPMEQLTRFVLAQKGKSG--IIYCNSR 249
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I+++L+ GV A YH M + RE + F RD ++V+VAT+AFGMGI+K +VR
Sbjct: 250 NKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFGMGINKSNVR 309
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V H+ P+++ESYYQE+GR GRD + + L+Y +++A E QR
Sbjct: 310 FVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLEKPETPQRQIEQH 369
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 370 KLEAIGEFAESQTCRR 385
>gi|68249329|ref|YP_248441.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae 86-028NP]
gi|229844599|ref|ZP_04464738.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae 6P18H1]
gi|68057528|gb|AAX87781.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae 86-028NP]
gi|229812313|gb|EEP48003.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae 6P18H1]
Length = 619
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 161/376 (42%), Positives = 224/376 (59%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+S LK FGY FR Q++VI + +D LVVMATG+GKSLCYQ+P L LV+SP
Sbjct: 17 LSVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISP 76
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ GI A+FL S+QT VQ K +G +LL+++PEK ++ SF
Sbjct: 77 LISLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEK--VMTNSF 134
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + + VC A+DEAHCIS+WGHDFR EY QL L+ P +ALTATA + D
Sbjct: 135 FQLISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATADYATQKD 194
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L LKN + I SFDR N+ Y + +++L + +L +G I+YC +
Sbjct: 195 ILRHLNLKNLHKYIGSFDRPNIRY---TLEEKYKPMEQLTRFVLAQKGKSG--IIYCNSR 249
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I+++L+ GV A YH M + RE + F RD ++V+VAT+AFGMGI+K +VR
Sbjct: 250 NKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFGMGINKSNVR 309
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V H+ P+++ESYYQE+GR GRD + + L+Y +++A E QR
Sbjct: 310 FVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILFEKPETPQRQIEQH 369
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 370 KLEAIGEFAESQTCRR 385
>gi|42781899|ref|NP_979146.1| ATP-dependent DNA helicase RecQ [Bacillus cereus ATCC 10987]
gi|217960255|ref|YP_002338815.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH187]
gi|222096315|ref|YP_002530372.1| ATP-dependent DNA helicase recq [Bacillus cereus Q1]
gi|229139452|ref|ZP_04268023.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BDRD-ST26]
gi|375284769|ref|YP_005105208.1| ATP-dependent DNA helicase RecQ [Bacillus cereus NC7401]
gi|423352562|ref|ZP_17330189.1| ATP-dependent DNA helicase RecQ [Bacillus cereus IS075]
gi|423372701|ref|ZP_17350041.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AND1407]
gi|423568327|ref|ZP_17544574.1| ATP-dependent DNA helicase RecQ [Bacillus cereus MSX-A12]
gi|42737823|gb|AAS41754.1| ATP-dependent DNA helicase RecQ [Bacillus cereus ATCC 10987]
gi|217065979|gb|ACJ80229.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH187]
gi|221240373|gb|ACM13083.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Q1]
gi|228643999|gb|EEL00260.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BDRD-ST26]
gi|358353296|dbj|BAL18468.1| ATP-dependent DNA helicase RecQ [Bacillus cereus NC7401]
gi|401091661|gb|EJP99801.1| ATP-dependent DNA helicase RecQ [Bacillus cereus IS075]
gi|401099138|gb|EJQ07148.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AND1407]
gi|401210615|gb|EJR17366.1| ATP-dependent DNA helicase RecQ [Bacillus cereus MSX-A12]
Length = 705
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 153/372 (41%), Positives = 225/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N+L + + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 NTLGINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLMKAGVSVSKYHAGMSDNDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSACILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|420376469|ref|ZP_14876214.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 1235-66]
gi|391303394|gb|EIQ61231.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 1235-66]
Length = 609
Score = 291 bits (745), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 157/375 (41%), Positives = 224/375 (59%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLI
Sbjct: 16 VLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLI 75
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q+ V +G +LL++ PE+ ++ +F
Sbjct: 76 SLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRSGQIRLLYIAPER--LMLDNFLE 133
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PFVALTATA E R+DI+
Sbjct: 134 NLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFVALTATADETTRLDIV 193
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 194 RLLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 248
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ AG YH + + R E F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 249 VEDTAARLQSRGISAGAYHAGLENAVRAEVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 308
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I
Sbjct: 309 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPAGQLLDIERHK 367
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 368 LNAMGAFAEAQTCRR 382
>gi|145630467|ref|ZP_01786247.1| ATP-dependent DNA helicase [Haemophilus influenzae R3021]
gi|144983857|gb|EDJ91299.1| ATP-dependent DNA helicase [Haemophilus influenzae R3021]
Length = 619
Score = 291 bits (745), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 161/376 (42%), Positives = 224/376 (59%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+S LK FGY FR Q++VI + +D LVVMATG+GKSLCYQ+P L LV+SP
Sbjct: 17 LSVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISP 76
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ GI A+FL S+QT VQ K +G +LL+++PEK ++ SF
Sbjct: 77 LISLMKDQVDQLQANGIEADFLNSSQTLAQQQQVQNKLISGQLKLLYVSPEK--VMTNSF 134
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + + VC A+DEAHCIS+WGHDFR EY QL L+ P +ALTATA + D
Sbjct: 135 FQLISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATADYATQQD 194
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L LKN + I SFDR N+ Y + +++L + +L +G I+YC +
Sbjct: 195 ILRHLNLKNLHKYIGSFDRPNIRY---TLEEKYKPMEQLTRFVLAQKGKSG--IIYCNSR 249
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I+++L+ GV A YH M + RE + F RD ++V+VAT+AFGMGI+K +VR
Sbjct: 250 NKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFGMGINKSNVR 309
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V H+ P+++ESYYQE+GR GRD + + L+Y +++A E QR
Sbjct: 310 FVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLEKPETPQRQIEQH 369
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 370 KLEAIGEFAESQTCRR 385
>gi|384180700|ref|YP_005566462.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324326784|gb|ADY22044.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 705
Score = 291 bits (745), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 153/372 (41%), Positives = 225/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N+L + + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 NTLGINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLMKAGVSVSKYHAGMSDNDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSACILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|417149341|ref|ZP_11989432.1| ATP-dependent DNA helicase RecQ [Escherichia coli 1.2264]
gi|386161562|gb|EIH23365.1| ATP-dependent DNA helicase RecQ [Escherichia coli 1.2264]
Length = 611
Score = 291 bits (745), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNSLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|423605483|ref|ZP_17581376.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD102]
gi|401242838|gb|EJR49209.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD102]
Length = 705
Score = 291 bits (745), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 153/372 (41%), Positives = 225/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N+L + + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 NTLGINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLMKAGVSVSKYHAGMSDNDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSACILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|410637731|ref|ZP_11348302.1| ATP-dependent DNA helicase RecQ [Glaciecola lipolytica E3]
gi|410142699|dbj|GAC15507.1| ATP-dependent DNA helicase RecQ [Glaciecola lipolytica E3]
Length = 609
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 150/373 (40%), Positives = 229/373 (61%), Gaps = 11/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK+ FGYS FR Q+ VI++++ +RD LV+M TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 22 LKEVFGYSHFRDGQQQVIEQVLSQRDALVLMPTGGGKSLCYQIPALILPGITIVVSPLIS 81
Query: 65 LMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L G+ A F+ S+ + ++ + + G F+LL++ PE+ ++ + F +
Sbjct: 82 LMKDQVDALTASGVAATFINSSIPREQLLNIYRQLQDGKFKLLYVAPER--LMQLEFIDR 139
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + L AVDEAHC+S WGHDFR +Y+ L +L+T +P + LTATA R DI
Sbjct: 140 LHTLNLSLIAVDEAHCVSHWGHDFRQDYRLLGQLKTHFPNIPVMGLTATADIATRADITQ 199
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L+ PYV +SFDR N+ Y + + VD+L+ + K G+G IVYC + V
Sbjct: 200 QLNLQTPYVFRSSFDRPNIRYNLLSKYKA---VDQLIHYV-KGQEGSG--IVYCNSRAKV 253
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
+E+S L + G+ + YH + + RE+ R FI+D + V+VAT+AFGMGI+K +VR+V+
Sbjct: 254 DELSFKLAKQGINSAGYHAGLEPEIREKIQRDFIQDNVDVIVATVAFGMGINKSNVRYVV 313
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+++ESYYQE+GR GRDG+ + L Y + A+ + + + ++
Sbjct: 314 HFDLPRSIESYYQETGRAGRDGMPAEALLLYDEKDAARIRQWIAMGENTERHDVELQKFA 373
Query: 362 AAQRYCLLTTCRR 374
A + + TCRR
Sbjct: 374 AMEAFADAQTCRR 386
>gi|229091823|ref|ZP_04223018.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock3-42]
gi|228691513|gb|EEL45269.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock3-42]
Length = 705
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 153/372 (41%), Positives = 225/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N+L + + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 NTLGINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLMKAGVSVSKYHAGMSDNDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSACILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|456890644|gb|EMG01448.1| ATP-dependent DNA helicase, RecQ family [Leptospira borgpetersenii
str. 200701203]
Length = 481
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 165/383 (43%), Positives = 237/383 (61%), Gaps = 15/383 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKT-ALVV 59
+ S+LK+ +G S FR QK+ I+ ++ +D LV++ TG GKSL YQLP ++ + LV+
Sbjct: 12 LESSLKEIWGMSRFRIGQKESIESVLGGKDTLVILPTGGGKSLIYQLPAVLDRSSLTLVI 71
Query: 60 SPLISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPI 116
SPLI+LM+DQV SLK +GI AE+ S Q D + ++A TG ++L+++PEKA +
Sbjct: 72 SPLIALMKDQVDSLKAKGIAAEYCNSTQDDLEQLRILSRASTGKIRILYLSPEKA--LSR 129
Query: 117 SFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR-TFLLGVPFVALTATATEKV 175
+ L K +C AVDEAHC+S+WGHDFR EY++L +LR + +P VALTATAT +V
Sbjct: 130 QIFEILPKLPLCRIAVDEAHCVSQWGHDFRPEYRKLYELRDKYHHQIPIVALTATATPRV 189
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILK---SVAGAGSII 232
DI NSL LKNP + SF R+NL + V+ S +EL++ +++ +G I
Sbjct: 190 IQDISNSLGLKNPTLIKGSFYRENLNFCVRFPQNETSKENELLKLLIRGNFQKTESGKAI 249
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
+YC T + VE I LK+ G K G YH +RE+ + + V+VAT AFGMG+
Sbjct: 250 IYCATRQKVESIYNFLKKNGFKVGKYHAGRTDSSREKTQNGYNIGKTNVLVATNAFGMGL 309
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ 352
D PDVR ++HY P +LESYYQE+GR GRDG +S C L+Y S+ +F G+ EN
Sbjct: 310 DNPDVRLIVHYQIPASLESYYQEAGRAGRDGKSSNCILFYHPSDLVTQNFIIGK---ENN 366
Query: 353 RTAIMESLLA-AQRYCLLTTCRR 374
R E+LL+ + Y + CR+
Sbjct: 367 RKG-GETLLSFVKEYAISNRCRQ 388
>gi|432855825|ref|ZP_20083516.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE144]
gi|431397110|gb|ELG80571.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE144]
Length = 611
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LTHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|196041721|ref|ZP_03109012.1| ATP-dependent DNA helicase RecQ [Bacillus cereus NVH0597-99]
gi|196027490|gb|EDX66106.1| ATP-dependent DNA helicase RecQ [Bacillus cereus NVH0597-99]
Length = 705
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 224/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + + +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHHILDYLPEKPLVLALTATATPQVRDDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N+L + + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 NTLGINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLMKAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L YA + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSACILLYASQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|7428315|pir||BVECRQ DNA helicase recQ - Escherichia coli (strain K-12)
Length = 610
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|237727934|ref|ZP_04558415.1| ATP-dependent DNA helicase RecQ [Citrobacter sp. 30_2]
gi|226910383|gb|EEH96301.1| ATP-dependent DNA helicase RecQ [Citrobacter sp. 30_2]
Length = 609
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 157/375 (41%), Positives = 224/375 (59%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLI
Sbjct: 16 VLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLI 75
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q+ V +G +LL++ PE+ ++ +F
Sbjct: 76 SLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRSGQIRLLYIAPER--LMLDNFLE 133
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PFVALTATA E R+DI+
Sbjct: 134 HLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFVALTATADETTRLDIV 193
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 194 RLLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 248
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ AG YH + + R E F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 249 VEDTAARLQSRGISAGAYHAGLENAVRAEVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 308
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I
Sbjct: 309 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPAGQLLDIERHK 367
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 368 LNAMGAFAEAQTCRR 382
>gi|165868634|ref|ZP_02213294.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0488]
gi|167631805|ref|ZP_02390132.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0442]
gi|167637571|ref|ZP_02395850.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0193]
gi|170685476|ref|ZP_02876700.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0465]
gi|177649646|ref|ZP_02932648.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0174]
gi|190565352|ref|ZP_03018272.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str.
Tsiankovskii-I]
gi|227814370|ref|YP_002814379.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. CDC 684]
gi|254685381|ref|ZP_05149241.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str.
CNEVA-9066]
gi|254722788|ref|ZP_05184576.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A1055]
gi|254737836|ref|ZP_05195539.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. Western
North America USA6153]
gi|254742990|ref|ZP_05200675.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. Kruger B]
gi|254752151|ref|ZP_05204188.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. Vollum]
gi|254760670|ref|ZP_05212694.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. Australia
94]
gi|386736560|ref|YP_006209741.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. H9401]
gi|421510247|ref|ZP_15957143.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. UR-1]
gi|421636606|ref|ZP_16077205.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. BF1]
gi|164715360|gb|EDR20877.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0488]
gi|167514120|gb|EDR89487.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0193]
gi|167532103|gb|EDR94739.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0442]
gi|170670836|gb|EDT21575.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0465]
gi|172084720|gb|EDT69778.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0174]
gi|190563379|gb|EDV17344.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str.
Tsiankovskii-I]
gi|227007076|gb|ACP16819.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. CDC 684]
gi|384386412|gb|AFH84073.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. H9401]
gi|401819703|gb|EJT18877.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. UR-1]
gi|403397134|gb|EJY94371.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. BF1]
Length = 705
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 225/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEEPLVLALTATATPQVRDDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N+L + + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 NTLGINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLMKAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L YA + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSACILLYASQDVQVQRFLIDQSIGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|419926481|ref|ZP_14444247.1| ATP-dependent DNA helicase RecQ [Escherichia coli 541-15]
gi|388382669|gb|EIL44516.1| ATP-dependent DNA helicase RecQ [Escherichia coli 541-15]
Length = 611
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|300917877|ref|ZP_07134511.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 115-1]
gi|432531614|ref|ZP_19768636.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE234]
gi|300414922|gb|EFJ98232.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 115-1]
gi|431066937|gb|ELD75555.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE234]
Length = 611
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRTKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|332882051|ref|ZP_08449686.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 329
str. F0087]
gi|357048209|ref|ZP_09109763.1| ATP-dependent DNA helicase RecQ [Paraprevotella clara YIT 11840]
gi|332679975|gb|EGJ52937.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 329
str. F0087]
gi|355528792|gb|EHG98270.1| ATP-dependent DNA helicase RecQ [Paraprevotella clara YIT 11840]
Length = 608
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 163/380 (42%), Positives = 226/380 (59%), Gaps = 17/380 (4%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M + LK+YFG+ FRP Q+D+I I+ D +V+M TG GKSLCYQ+P L+ T +V+S
Sbjct: 1 MQNILKRYFGFDSFRPLQEDIIGNILAGHDVVVLMPTGGGKSLCYQVPALMREGTTVVIS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV L+ G+ A L S ++ V+ G +LL+++PE+ ++ +
Sbjct: 61 PLISLMKDQVEGLRANGVPAAALNSMNDEAESARVRAACLRGELKLLYISPER-LMLELP 119
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
+ + +K V LFAVDEAHCIS+WGHDFR EY QL LR VP VALTATA R
Sbjct: 120 YLIRDMK--VSLFAVDEAHCISQWGHDFRPEYAQLGLLRQTFPDVPIVALTATADRLTRE 177
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDE---LVQEILKSVAGAGSIIVY 234
DI L L +P V I+SFDR NL VK RG D+ +++ I + G I+Y
Sbjct: 178 DIQKQLALSDPVVFISSFDRPNLSLDVK---RGYQKKDKDRAILELIARHPDDCG--IIY 232
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C++ K E +++ L+ + A YH + ++ RE A FI D ++V+ AT+AFGMGIDK
Sbjct: 233 CLSKKTTESVAEMLRGHDIAAVAYHAGLPTEERERAQDDFIHDRVQVVCATVAFGMGIDK 292
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
+VR VIHY PK++E +YQE GR GRDG+ + L+Y+ + + + ES QR
Sbjct: 293 SNVRFVIHYNLPKSIEGFYQEIGRAGRDGLPAETVLFYSLGDLVQLSKFAQES---GQRE 349
Query: 355 AIMESLLAAQRYCLLTTCRR 374
ME L Q Y CRR
Sbjct: 350 INMEKLRRMQEYAESDVCRR 369
>gi|301025732|ref|ZP_07189247.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 69-1]
gi|419918818|ref|ZP_14436995.1| ATP-dependent DNA helicase RecQ [Escherichia coli KD2]
gi|300395855|gb|EFJ79393.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 69-1]
gi|388389458|gb|EIL50989.1| ATP-dependent DNA helicase RecQ [Escherichia coli KD2]
Length = 611
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|419938599|ref|ZP_14455425.1| ATP-dependent DNA helicase RecQ [Escherichia coli 75]
gi|388409947|gb|EIL70208.1| ATP-dependent DNA helicase RecQ [Escherichia coli 75]
Length = 611
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQLLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|30064881|ref|NP_839052.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 2a str. 2457T]
gi|56480445|ref|NP_709628.2| ATP-dependent DNA helicase RecQ [Shigella flexneri 2a str. 301]
gi|384545430|ref|YP_005729494.1| ATP-dependent DNA helicase [Shigella flexneri 2002017]
gi|30043141|gb|AAP18863.1| ATP-dependent DNA helicase [Shigella flexneri 2a str. 2457T]
gi|56383996|gb|AAN45335.2| ATP-dependent DNA helicase [Shigella flexneri 2a str. 301]
gi|281603217|gb|ADA76201.1| ATP-dependent DNA helicase [Shigella flexneri 2002017]
Length = 611
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSRGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|423365441|ref|ZP_17342874.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD142]
gi|401090808|gb|EJP98960.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD142]
Length = 705
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 225/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVLEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVREDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N+L + + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 NTLGINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDEI VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLGKAGVSVSKYHAGMSDHDRNEQQELFLRDEISVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSECILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|365103530|ref|ZP_09333396.1| ATP-dependent DNA helicase recQ [Citrobacter freundii 4_7_47CFAA]
gi|363645202|gb|EHL84473.1| ATP-dependent DNA helicase recQ [Citrobacter freundii 4_7_47CFAA]
Length = 604
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 157/375 (41%), Positives = 224/375 (59%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLI
Sbjct: 11 VLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLI 70
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q+ V +G +LL++ PE+ ++ +F
Sbjct: 71 SLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRSGQIRLLYIAPER--LMLDNFLE 128
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PFVALTATA E R+DI+
Sbjct: 129 HLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFVALTATADETTRLDIV 188
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 189 RLLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 243
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ AG YH + + R E F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 244 VEDTAARLQSRGISAGAYHAGLENAVRAEVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 303
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I
Sbjct: 304 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPAGQLLDIERHK 362
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 363 LNAMGAFAEAQTCRR 377
>gi|229196988|ref|ZP_04323727.1| ATP-dependent DNA helicase RecQ [Bacillus cereus m1293]
gi|228586477|gb|EEK44556.1| ATP-dependent DNA helicase RecQ [Bacillus cereus m1293]
Length = 705
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 153/372 (41%), Positives = 225/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N+L + + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 NTLGINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLMKAGVSVSKYHAGMSDNDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSACILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|91091128|ref|XP_969655.1| PREDICTED: similar to werner syndrome helicase [Tribolium
castaneum]
gi|270013136|gb|EFA09584.1| hypothetical protein TcasGA2_TC011701 [Tribolium castaneum]
Length = 874
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 149/342 (43%), Positives = 216/342 (63%), Gaps = 7/342 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L K+FG+ FRP Q ++I I++KRD +M+TG GKSLC+Q P LVVSP
Sbjct: 35 LKVLTKFFGHKTFRPKQWEIIFAIMDKRDVCAIMSTGYGKSLCFQYPSTFLKGVTLVVSP 94
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDS-SVQTKAETGYFQLLFMTPEK-ACIIPISFW 119
LI+LMQDQV++L I A LGSAQ + V + ++++TPE + + +
Sbjct: 95 LIALMQDQVLALTVSNIPACLLGSAQNEQRKVIEDILQNKYSIVYITPEFCSGDLGLELL 154
Query: 120 SKLLKA-GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
K+ + + L A+DEAHCIS WGHDFR +Y+ L LR VP +A+TATAT +VR D
Sbjct: 155 KKMAQQLKIVLIAIDEAHCISSWGHDFRSQYRNLGNLRQIFPRVPVIAVTATATTRVRGD 214
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG---AGSIIVYC 235
I+ SL+L++P + + FDR NL++ V G +F D L + ++ + +G I+YC
Sbjct: 215 IVKSLQLRDPLIVCSGFDRPNLYFEVYQRAGGGAFKD-LTKAMVYEKSEWKFSGPTIIYC 273
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
+T + E++ + LK GV+ YH + K R+EAH F+RD++ V+VAT+AFGMGIDKP
Sbjct: 274 ITRRQTEDLCEILKNCGVRCRVYHAGLSQKERQEAHEEFVRDKVDVIVATIAFGMGIDKP 333
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNF 337
D+R+VIHYG ++ESYYQE GR GRDG+ + C Y+ +F
Sbjct: 334 DIRNVIHYGSSNSVESYYQEVGRAGRDGLPARCVTIYSSGDF 375
>gi|432545657|ref|ZP_19782479.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE236]
gi|432551136|ref|ZP_19787884.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE237]
gi|432624192|ref|ZP_19860204.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE76]
gi|432817612|ref|ZP_20051362.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE115]
gi|431070550|gb|ELD78853.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE236]
gi|431075989|gb|ELD83505.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE237]
gi|431155723|gb|ELE56469.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE76]
gi|431360028|gb|ELG46649.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE115]
Length = 611
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|157963641|ref|YP_001503675.1| ATP-dependent DNA helicase RecQ [Shewanella pealeana ATCC 700345]
gi|157848641|gb|ABV89140.1| ATP-dependent DNA helicase RecQ [Shewanella pealeana ATCC 700345]
Length = 607
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 159/381 (41%), Positives = 228/381 (59%), Gaps = 19/381 (4%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ STL+ FGY FR Q++VI++I +DCLV+M TG GKSLCYQLP LV +VVS
Sbjct: 13 LSSTLQSVFGYRTFREGQREVIEQICAGQDCLVIMPTGGGKSLCYQLPALVLPGLTVVVS 72
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSA-QTDSSVQT--KAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV SL Q G++A +L S+ + S+Q K G +LL+++PE+ ++ S
Sbjct: 73 PLISLMKDQVDSLIQTGVSAAYLNSSLPREESLQVLQKMRYGELKLLYVSPER--LLQAS 130
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
F +L + V LFA+DEAHCIS+WGHDFR EY L +LR VP +ALTATA + R
Sbjct: 131 FIDRLHELNVSLFAIDEAHCISQWGHDFRPEYAALGRLRQQFPQVPIMALTATADKATRA 190
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGV----KVINRGQSFVDELVQEILKSVAGAGSIIV 233
DI L + P+ + SFDR N+ Y V N+ + FVD S IV
Sbjct: 191 DICERLTI-TPHSLLTSFDRPNIRYTVAEKLNAANQLRQFVD---------AQNGASGIV 240
Query: 234 YCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGID 293
YC + + V+E+++ L+ G +A YH + R E F++D++ ++VAT+AFGMGI+
Sbjct: 241 YCSSRRRVDEVAERLRLQGHQAEAYHAGKTQEERAEVQDKFLKDQLDIVVATVAFGMGIN 300
Query: 294 KPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQR 353
K +VR+V+HY PK++ESYYQE+GR GRDG+ S + + ++ + +S+ Q+
Sbjct: 301 KSNVRYVVHYDIPKSVESYYQETGRAGRDGLDSEALMLFDPADIGRVRHLIEQSEPGPQQ 360
Query: 354 TAIMESLLAAQRYCLLTTCRR 374
L + TCRR
Sbjct: 361 QVEFHKLNTMAAFAEAQTCRR 381
>gi|425064148|ref|ZP_18467273.1| ATP-dependent DNA helicase RecQ [Pasteurella multocida subsp.
gallicida X73]
gi|404381741|gb|EJZ78209.1| ATP-dependent DNA helicase RecQ [Pasteurella multocida subsp.
gallicida X73]
Length = 632
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 157/376 (41%), Positives = 227/376 (60%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L FGY FR Q++VI + +D LV+MATG+GKSLCYQ+P L LV+SP
Sbjct: 27 LDVLHAVFGYQSFRKGQEEVIDATLMGKDSLVIMATGNGKSLCYQIPALCFEGLTLVISP 86
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L GI A++L S+QT VQ K +G +LL+++PEK ++ SF
Sbjct: 87 LISLMKDQVDQLLANGIEADYLNSSQTFTEQQQVQNKLMSGTLKLLYVSPEK--VMTTSF 144
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + V A+DEAHCIS+WGHDFR EY QL L++ P +ALTATA R D
Sbjct: 145 FHLISHCKVSFVAIDEAHCISQWGHDFRPEYTQLGGLKSCFPHAPIMALTATADHATRQD 204
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L L++P+V I SFDR N+ Y ++ + + +++L + +L +G I+YC +
Sbjct: 205 ILRHLNLQSPHVYIGSFDRPNIRY--TLVEKFKP-IEQLCRFVLGQKGKSG--IIYCNSR 259
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I+++L+ GV A YH + + RE+ R F RD ++V+VAT+AFGMGI+K +VR
Sbjct: 260 SKVERIAESLRNKGVSAQAYHAGLETAQREQVQRAFQRDNVQVVVATIAFGMGINKSNVR 319
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+H+ P+++ESYYQE+GR GRD + + L+Y +++A E QR
Sbjct: 320 FVVHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLHKILLEKPESPQRQIEAL 379
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 380 KLQAIGEFAESQTCRR 395
>gi|417692248|ref|ZP_12341449.1| ATP-dependent DNA helicase RecQ [Shigella boydii 5216-82]
gi|332084419|gb|EGI89615.1| ATP-dependent DNA helicase RecQ [Shigella boydii 5216-82]
Length = 609
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|425307629|ref|ZP_18697292.1| ATP-dependent DNA helicase RecQ [Escherichia coli N1]
gi|408224965|gb|EKI48662.1| ATP-dependent DNA helicase RecQ [Escherichia coli N1]
Length = 609
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|416333516|ref|ZP_11670743.1| ATP-dependent DNA helicase RecQ [Escherichia coli WV_060327]
gi|320197630|gb|EFW72242.1| ATP-dependent DNA helicase RecQ [Escherichia coli WV_060327]
Length = 609
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|170769878|ref|ZP_02904331.1| ATP-dependent DNA helicase RecQ [Escherichia albertii TW07627]
gi|170121316|gb|EDS90247.1| ATP-dependent DNA helicase RecQ [Escherichia albertii TW07627]
Length = 611
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQQLDVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSRGISAAAYHAGLENDVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|417173851|ref|ZP_12003647.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3.2608]
gi|417185330|ref|ZP_12010731.1| ATP-dependent DNA helicase RecQ [Escherichia coli 93.0624]
gi|386176543|gb|EIH54022.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3.2608]
gi|386182630|gb|EIH65386.1| ATP-dependent DNA helicase RecQ [Escherichia coli 93.0624]
Length = 611
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|293407448|ref|ZP_06651368.1| ATP-dependent DNA helicase RecQ [Escherichia coli FVEC1412]
gi|298383188|ref|ZP_06992782.1| ATP-dependent DNA helicase RecQ [Escherichia coli FVEC1302]
gi|300900624|ref|ZP_07118784.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 198-1]
gi|419937477|ref|ZP_14454373.1| ATP-dependent DNA helicase RecQ [Escherichia coli 576-1]
gi|422335405|ref|ZP_16416404.1| ATP-dependent DNA helicase recQ [Escherichia coli 4_1_47FAA]
gi|432355858|ref|ZP_19599118.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE2]
gi|432404223|ref|ZP_19646965.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE26]
gi|432428490|ref|ZP_19670969.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE181]
gi|432463191|ref|ZP_19705321.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE204]
gi|432478186|ref|ZP_19720170.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE208]
gi|432491658|ref|ZP_19733516.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE213]
gi|432520039|ref|ZP_19757217.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE228]
gi|432540207|ref|ZP_19777097.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE235]
gi|432633771|ref|ZP_19869687.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE80]
gi|432643423|ref|ZP_19879243.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE83]
gi|432668418|ref|ZP_19903986.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE116]
gi|432772598|ref|ZP_20006908.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE54]
gi|432841683|ref|ZP_20075137.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE140]
gi|432889621|ref|ZP_20102893.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE158]
gi|432915492|ref|ZP_20120747.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE190]
gi|433021080|ref|ZP_20209155.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE105]
gi|433055454|ref|ZP_20242605.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE122]
gi|433070190|ref|ZP_20256950.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE128]
gi|433160980|ref|ZP_20345793.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE177]
gi|433180699|ref|ZP_20365069.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE82]
gi|433205578|ref|ZP_20389319.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE95]
gi|291425559|gb|EFE98597.1| ATP-dependent DNA helicase RecQ [Escherichia coli FVEC1412]
gi|298276424|gb|EFI17943.1| ATP-dependent DNA helicase RecQ [Escherichia coli FVEC1302]
gi|300355875|gb|EFJ71745.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 198-1]
gi|373243555|gb|EHP63057.1| ATP-dependent DNA helicase recQ [Escherichia coli 4_1_47FAA]
gi|388397659|gb|EIL58631.1| ATP-dependent DNA helicase RecQ [Escherichia coli 576-1]
gi|430872071|gb|ELB95690.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE2]
gi|430922543|gb|ELC43295.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE26]
gi|430950316|gb|ELC69702.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE181]
gi|430985141|gb|ELD01748.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE204]
gi|431001695|gb|ELD17271.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE208]
gi|431017014|gb|ELD30531.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE213]
gi|431047458|gb|ELD57458.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE228]
gi|431066698|gb|ELD75322.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE235]
gi|431166942|gb|ELE67245.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE80]
gi|431177006|gb|ELE76946.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE83]
gi|431197038|gb|ELE95905.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE116]
gi|431323251|gb|ELG10799.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE54]
gi|431384955|gb|ELG68945.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE140]
gi|431413215|gb|ELG96009.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE158]
gi|431435094|gb|ELH16707.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE190]
gi|431526412|gb|ELI03166.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE105]
gi|431565194|gb|ELI38332.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE122]
gi|431578296|gb|ELI50904.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE128]
gi|431673078|gb|ELJ39309.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE177]
gi|431697564|gb|ELJ62670.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE82]
gi|431715540|gb|ELJ79688.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE95]
Length = 611
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|15804414|ref|NP_290454.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EDL933]
gi|15834006|ref|NP_312779.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
Sakai]
gi|26250563|ref|NP_756603.1| ATP-dependent DNA helicase RecQ [Escherichia coli CFT073]
gi|91213348|ref|YP_543334.1| ATP-dependent DNA helicase RecQ [Escherichia coli UTI89]
gi|117626081|ref|YP_859404.1| ATP-dependent DNA helicase RecQ [Escherichia coli APEC O1]
gi|168750361|ref|ZP_02775383.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4113]
gi|168753724|ref|ZP_02778731.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4401]
gi|168763952|ref|ZP_02788959.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4501]
gi|168768108|ref|ZP_02793115.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4486]
gi|168775622|ref|ZP_02800629.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4196]
gi|168780726|ref|ZP_02805733.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4076]
gi|168786665|ref|ZP_02811672.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC869]
gi|168801109|ref|ZP_02826116.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC508]
gi|193065720|ref|ZP_03046785.1| ATP-dependent DNA helicase RecQ [Escherichia coli E22]
gi|193068067|ref|ZP_03049032.1| ATP-dependent DNA helicase RecQ [Escherichia coli E110019]
gi|194434028|ref|ZP_03066298.1| ATP-dependent DNA helicase RecQ [Shigella dysenteriae 1012]
gi|195938114|ref|ZP_03083496.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4024]
gi|208806062|ref|ZP_03248399.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4206]
gi|208812810|ref|ZP_03254139.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4045]
gi|208821321|ref|ZP_03261641.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4042]
gi|209400089|ref|YP_002273341.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4115]
gi|217325284|ref|ZP_03441368.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
TW14588]
gi|227888592|ref|ZP_04006397.1| ATP-dependent DNA helicase RecQ [Escherichia coli 83972]
gi|237702832|ref|ZP_04533313.1| ATP-dependent DNA helicase recQ [Escherichia sp. 3_2_53FAA]
gi|261225598|ref|ZP_05939879.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
FRIK2000]
gi|261255644|ref|ZP_05948177.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
FRIK966]
gi|291285239|ref|YP_003502057.1| ATP-dependent DNA helicase RecQ [Escherichia coli O55:H7 str.
CB9615]
gi|300818704|ref|ZP_07098911.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 107-1]
gi|300939956|ref|ZP_07154585.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 21-1]
gi|300950413|ref|ZP_07164336.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 116-1]
gi|300955172|ref|ZP_07167569.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 175-1]
gi|300985659|ref|ZP_07177546.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 45-1]
gi|301029039|ref|ZP_07192192.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 196-1]
gi|301047295|ref|ZP_07194381.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 185-1]
gi|301328411|ref|ZP_07221497.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 78-1]
gi|301646111|ref|ZP_07246011.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 146-1]
gi|306815139|ref|ZP_07449292.1| ATP-dependent DNA helicase RecQ [Escherichia coli NC101]
gi|331644555|ref|ZP_08345675.1| ATP-dependent DNA helicase RecQ [Escherichia coli H736]
gi|331655508|ref|ZP_08356501.1| ATP-dependent DNA helicase RecQ [Escherichia coli M718]
gi|331665474|ref|ZP_08366373.1| ATP-dependent DNA helicase RecQ [Escherichia coli TA143]
gi|331675289|ref|ZP_08376040.1| ATP-dependent DNA helicase RecQ [Escherichia coli TA280]
gi|332282668|ref|ZP_08395081.1| ATP-dependent DNA helicase recQ [Shigella sp. D9]
gi|386597646|ref|YP_006094046.1| RecQ familyATP-dependent DNA helicase [Escherichia coli DH1]
gi|386606401|ref|YP_006112701.1| ATP-dependent DNA helicase RecQ [Escherichia coli UM146]
gi|386626719|ref|YP_006146447.1| ATP-dependent DNA helicase [Escherichia coli O7:K1 str. CE10]
gi|386631763|ref|YP_006151483.1| ATP-dependent DNA helicase RecQ [Escherichia coli str. 'clone D
i2']
gi|386636683|ref|YP_006156402.1| ATP-dependent DNA helicase RecQ [Escherichia coli str. 'clone D
i14']
gi|387619114|ref|YP_006122136.1| ATP-dependent DNA helicase RecQ [Escherichia coli O83:H1 str. NRG
857C]
gi|387623474|ref|YP_006131102.1| ATP-dependent DNA helicase RecQ [Escherichia coli DH1]
gi|387885050|ref|YP_006315352.1| ATP-dependent DNA helicase RecQ [Escherichia coli Xuzhou21]
gi|415875441|ref|ZP_11542196.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 79-10]
gi|416261809|ref|ZP_11640557.1| ATP-dependent DNA helicase RecQ [Shigella dysenteriae CDC 74-1112]
gi|416284789|ref|ZP_11647410.1| ATP-dependent DNA helicase RecQ [Shigella boydii ATCC 9905]
gi|416307593|ref|ZP_11654634.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
1044]
gi|416319727|ref|ZP_11662279.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC1212]
gi|416326935|ref|ZP_11667010.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
1125]
gi|416778771|ref|ZP_11876102.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
G5101]
gi|416790129|ref|ZP_11880995.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H- str.
493-89]
gi|416801903|ref|ZP_11885883.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H- str. H
2687]
gi|416812763|ref|ZP_11890805.1| ATP-dependent DNA helicase RecQ [Escherichia coli O55:H7 str.
3256-97]
gi|416823216|ref|ZP_11895422.1| ATP-dependent DNA helicase RecQ [Escherichia coli O55:H7 str. USDA
5905]
gi|416833537|ref|ZP_11900417.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
LSU-61]
gi|417087782|ref|ZP_11954640.1| ATP-dependent DNA helicase RecQ [Escherichia coli cloneA_i1]
gi|417125722|ref|ZP_11973683.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.0246]
gi|417135031|ref|ZP_11979816.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5.0588]
gi|417156682|ref|ZP_11994306.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0497]
gi|417169247|ref|ZP_12001502.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0741]
gi|417249485|ref|ZP_12041269.1| ATP-dependent DNA helicase RecQ [Escherichia coli 4.0967]
gi|417265179|ref|ZP_12052558.1| ATP-dependent DNA helicase RecQ [Escherichia coli 2.3916]
gi|417273258|ref|ZP_12060605.1| ATP-dependent DNA helicase RecQ [Escherichia coli 2.4168]
gi|417279255|ref|ZP_12066565.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3.2303]
gi|417293640|ref|ZP_12080919.1| ATP-dependent DNA helicase RecQ [Escherichia coli B41]
gi|417296259|ref|ZP_12083506.1| ATP-dependent DNA helicase RecQ [Escherichia coli 900105 (10e)]
gi|417868124|ref|ZP_12513155.1| hypothetical protein C22711_5047 [Escherichia coli O104:H4 str.
C227-11]
gi|418040283|ref|ZP_12678529.1| ATP-dependent DNA helicase RecQ [Escherichia coli W26]
gi|418960294|ref|ZP_13512185.1| ATP-dependent DNA helicase RecQ [Escherichia coli J53]
gi|419804829|ref|ZP_14329980.1| ATP-dependent DNA helicase RecQ [Escherichia coli AI27]
gi|419926606|ref|ZP_14444357.1| ATP-dependent DNA helicase RecQ [Escherichia coli 541-1]
gi|419943310|ref|ZP_14459870.1| ATP-dependent DNA helicase RecQ [Escherichia coli HM605]
gi|421777493|ref|ZP_16214088.1| ATP-dependent DNA helicase RecQ [Escherichia coli AD30]
gi|422361452|ref|ZP_16442074.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 110-3]
gi|422364103|ref|ZP_16444631.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 153-1]
gi|422752068|ref|ZP_16805973.1| ATP-dependent DNA helicase RecQ [Escherichia coli H252]
gi|422757541|ref|ZP_16811359.1| ATP-dependent DNA helicase RecQ [Escherichia coli H263]
gi|422764373|ref|ZP_16818123.1| ATP-dependent DNA helicase RecQ [Escherichia coli E1167]
gi|422773902|ref|ZP_16827583.1| ATP-dependent DNA helicase RecQ [Escherichia coli E482]
gi|422818975|ref|ZP_16867187.1| ATP-dependent DNA helicase recQ [Escherichia coli M919]
gi|422836240|ref|ZP_16884288.1| ATP-dependent DNA helicase recQ [Escherichia coli E101]
gi|422842112|ref|ZP_16890078.1| ATP-dependent DNA helicase recQ [Escherichia coli H397]
gi|422963299|ref|ZP_16973143.1| ATP-dependent DNA helicase recQ [Escherichia coli H494]
gi|422990089|ref|ZP_16980861.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
C227-11]
gi|422996987|ref|ZP_16987749.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
C236-11]
gi|423002081|ref|ZP_16992833.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
09-7901]
gi|423005737|ref|ZP_16996482.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
04-8351]
gi|423012298|ref|ZP_17003030.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-3677]
gi|423021529|ref|ZP_17012234.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4404]
gi|423026687|ref|ZP_17017381.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4522]
gi|423032514|ref|ZP_17023200.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4623]
gi|423035353|ref|ZP_17026030.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C1]
gi|423040509|ref|ZP_17031178.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C2]
gi|423047194|ref|ZP_17037853.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C3]
gi|423055733|ref|ZP_17044539.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C4]
gi|423057736|ref|ZP_17046535.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C5]
gi|423703345|ref|ZP_17677777.1| ATP-dependent DNA helicase recQ [Escherichia coli H730]
gi|427807018|ref|ZP_18974085.1| ATP-dependent DNA helicase [Escherichia coli chi7122]
gi|427811606|ref|ZP_18978671.1| ATP-dependent DNA helicase [Escherichia coli]
gi|429721569|ref|ZP_19256483.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429773463|ref|ZP_19305477.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02030]
gi|429778828|ref|ZP_19310793.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02033-1]
gi|429782663|ref|ZP_19314587.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02092]
gi|429788056|ref|ZP_19319942.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02093]
gi|429794495|ref|ZP_19326335.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02281]
gi|429800455|ref|ZP_19332243.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02318]
gi|429804067|ref|ZP_19335823.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02913]
gi|429808715|ref|ZP_19340430.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-03439]
gi|429814414|ref|ZP_19346084.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-04080]
gi|429819617|ref|ZP_19351246.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-03943]
gi|429905937|ref|ZP_19371912.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429910070|ref|ZP_19376031.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429915970|ref|ZP_19381915.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429921018|ref|ZP_19386944.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429926826|ref|ZP_19392736.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429930757|ref|ZP_19396656.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429937299|ref|ZP_19403184.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429942978|ref|ZP_19408849.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429945657|ref|ZP_19411516.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429953220|ref|ZP_19419064.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429956566|ref|ZP_19422396.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec12-0466]
gi|432360276|ref|ZP_19603487.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE4]
gi|432365076|ref|ZP_19608229.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE5]
gi|432367297|ref|ZP_19610409.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE10]
gi|432383719|ref|ZP_19626643.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE15]
gi|432389627|ref|ZP_19632505.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE16]
gi|432394491|ref|ZP_19637307.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE21]
gi|432414086|ref|ZP_19656738.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE39]
gi|432419345|ref|ZP_19661934.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE44]
gi|432434048|ref|ZP_19676469.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE187]
gi|432438779|ref|ZP_19681155.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE188]
gi|432443352|ref|ZP_19685684.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE189]
gi|432448496|ref|ZP_19690791.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE191]
gi|432452089|ref|ZP_19694343.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE193]
gi|432458964|ref|ZP_19701137.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE201]
gi|432483235|ref|ZP_19725182.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE210]
gi|432487578|ref|ZP_19729484.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE212]
gi|432493074|ref|ZP_19734902.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE214]
gi|432506714|ref|ZP_19748431.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE220]
gi|432516211|ref|ZP_19753425.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE224]
gi|432526295|ref|ZP_19763406.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE230]
gi|432528681|ref|ZP_19765751.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE233]
gi|432571096|ref|ZP_19807600.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE53]
gi|432576067|ref|ZP_19812534.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE55]
gi|432578095|ref|ZP_19814540.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE56]
gi|432590276|ref|ZP_19826626.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE58]
gi|432595035|ref|ZP_19831345.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE60]
gi|432600079|ref|ZP_19836347.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE62]
gi|432605259|ref|ZP_19841468.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE67]
gi|432613825|ref|ZP_19849981.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE72]
gi|432629445|ref|ZP_19865409.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE77]
gi|432634727|ref|ZP_19870624.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE81]
gi|432648493|ref|ZP_19884277.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE86]
gi|432653476|ref|ZP_19889212.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE87]
gi|432658058|ref|ZP_19893754.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE93]
gi|432663070|ref|ZP_19898697.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE111]
gi|432672915|ref|ZP_19908432.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE119]
gi|432677001|ref|ZP_19912440.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE142]
gi|432687652|ref|ZP_19922939.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE156]
gi|432689149|ref|ZP_19924414.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE161]
gi|432701337|ref|ZP_19936480.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE169]
gi|432706554|ref|ZP_19941647.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE171]
gi|432739319|ref|ZP_19974046.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE42]
gi|432747796|ref|ZP_19982457.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE43]
gi|432752279|ref|ZP_19986855.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE29]
gi|432756779|ref|ZP_19991322.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE22]
gi|432768201|ref|ZP_20002590.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE50]
gi|432780984|ref|ZP_20015199.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE59]
gi|432785808|ref|ZP_20019983.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE63]
gi|432789848|ref|ZP_20023974.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE65]
gi|432795081|ref|ZP_20029152.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE78]
gi|432796592|ref|ZP_20030625.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE79]
gi|432808068|ref|ZP_20041980.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE91]
gi|432818612|ref|ZP_20052333.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE118]
gi|432824744|ref|ZP_20058407.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE123]
gi|432847043|ref|ZP_20079554.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE141]
gi|432866699|ref|ZP_20089036.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE146]
gi|432878187|ref|ZP_20095636.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE154]
gi|432907645|ref|ZP_20116028.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE194]
gi|432931567|ref|ZP_20131599.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE184]
gi|432940641|ref|ZP_20138542.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE183]
gi|432943514|ref|ZP_20140349.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE196]
gi|432951080|ref|ZP_20144823.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE197]
gi|432964632|ref|ZP_20153702.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE202]
gi|432974095|ref|ZP_20162937.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE207]
gi|432976046|ref|ZP_20164877.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE209]
gi|432987668|ref|ZP_20176378.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE215]
gi|432997605|ref|ZP_20186184.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE218]
gi|433002200|ref|ZP_20190717.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE223]
gi|433002724|ref|ZP_20191232.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE227]
gi|433010024|ref|ZP_20198434.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE229]
gi|433016140|ref|ZP_20204466.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE104]
gi|433025731|ref|ZP_20213696.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE106]
gi|433035751|ref|ZP_20223437.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE112]
gi|433040839|ref|ZP_20228423.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE113]
gi|433045355|ref|ZP_20232827.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE117]
gi|433050297|ref|ZP_20237614.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE120]
gi|433060346|ref|ZP_20247376.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE124]
gi|433065296|ref|ZP_20252196.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE125]
gi|433084749|ref|ZP_20271193.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE133]
gi|433089549|ref|ZP_20275906.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE137]
gi|433103420|ref|ZP_20289488.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE145]
gi|433117753|ref|ZP_20303531.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE153]
gi|433127456|ref|ZP_20312995.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE160]
gi|433132402|ref|ZP_20317821.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE163]
gi|433137074|ref|ZP_20322396.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE166]
gi|433141529|ref|ZP_20326765.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE167]
gi|433146459|ref|ZP_20331588.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE168]
gi|433151482|ref|ZP_20336476.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE174]
gi|433156014|ref|ZP_20340937.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE176]
gi|433165840|ref|ZP_20350564.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE179]
gi|433170836|ref|ZP_20355450.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE180]
gi|433175714|ref|ZP_20360216.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE232]
gi|433190628|ref|ZP_20374713.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE88]
gi|433195880|ref|ZP_20379845.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE90]
gi|433200586|ref|ZP_20384466.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE94]
gi|433209973|ref|ZP_20393634.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE97]
gi|433214852|ref|ZP_20398424.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE99]
gi|442591349|ref|ZP_21009834.1| ATP-dependent DNA helicase RecQ [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|442603448|ref|ZP_21018338.1| ATP-dependent DNA helicase RecQ [Escherichia coli Nissle 1917]
gi|452967363|ref|ZP_21965590.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4009]
gi|12518696|gb|AAG59018.1|AE005613_11 ATP-dependent DNA helicase [Escherichia coli O157:H7 str. EDL933]
gi|26110993|gb|AAN83177.1|AE016769_292 ATP-dependent DNA helicase recQ [Escherichia coli CFT073]
gi|13364228|dbj|BAB38175.1| ATP-dependent DNA helicase [Escherichia coli O157:H7 str. Sakai]
gi|91074922|gb|ABE09803.1| ATP-dependent DNA helicase [Escherichia coli UTI89]
gi|115515205|gb|ABJ03280.1| ATP-dependent DNA helicase [Escherichia coli APEC O1]
gi|187768838|gb|EDU32682.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4196]
gi|188015421|gb|EDU53543.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4113]
gi|189001596|gb|EDU70582.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4076]
gi|189358975|gb|EDU77394.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4401]
gi|189362723|gb|EDU81142.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4486]
gi|189365963|gb|EDU84379.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4501]
gi|189373237|gb|EDU91653.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC869]
gi|189376685|gb|EDU95101.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC508]
gi|192926687|gb|EDV81316.1| ATP-dependent DNA helicase RecQ [Escherichia coli E22]
gi|192958687|gb|EDV89125.1| ATP-dependent DNA helicase RecQ [Escherichia coli E110019]
gi|194417686|gb|EDX33785.1| ATP-dependent DNA helicase RecQ [Shigella dysenteriae 1012]
gi|208725863|gb|EDZ75464.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4206]
gi|208734087|gb|EDZ82774.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4045]
gi|208741444|gb|EDZ89126.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4042]
gi|209161489|gb|ACI38922.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4115]
gi|209753168|gb|ACI74891.1| threonine efflux protein [Escherichia coli]
gi|209753170|gb|ACI74892.1| threonine efflux protein [Escherichia coli]
gi|209753172|gb|ACI74893.1| threonine efflux protein [Escherichia coli]
gi|209753174|gb|ACI74894.1| threonine efflux protein [Escherichia coli]
gi|209753176|gb|ACI74895.1| threonine efflux protein [Escherichia coli]
gi|217321505|gb|EEC29929.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
TW14588]
gi|226903003|gb|EEH89262.1| ATP-dependent DNA helicase recQ [Escherichia sp. 3_2_53FAA]
gi|227834431|gb|EEJ44897.1| ATP-dependent DNA helicase RecQ [Escherichia coli 83972]
gi|260451335|gb|ACX41757.1| ATP-dependent DNA helicase, RecQ family [Escherichia coli DH1]
gi|290765112|gb|ADD59073.1| ATP-dependent DNA helicase RecQ [Escherichia coli O55:H7 str.
CB9615]
gi|299878002|gb|EFI86213.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 196-1]
gi|300300814|gb|EFJ57199.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 185-1]
gi|300317889|gb|EFJ67673.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 175-1]
gi|300408043|gb|EFJ91581.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 45-1]
gi|300450259|gb|EFK13879.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 116-1]
gi|300455218|gb|EFK18711.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 21-1]
gi|300528670|gb|EFK49732.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 107-1]
gi|300845161|gb|EFK72921.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 78-1]
gi|301075637|gb|EFK90443.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 146-1]
gi|305851508|gb|EFM51962.1| ATP-dependent DNA helicase RecQ [Escherichia coli NC101]
gi|307628885|gb|ADN73189.1| ATP-dependent DNA helicase RecQ [Escherichia coli UM146]
gi|312948375|gb|ADR29202.1| ATP-dependent DNA helicase RecQ [Escherichia coli O83:H1 str. NRG
857C]
gi|315138398|dbj|BAJ45557.1| ATP-dependent DNA helicase RecQ [Escherichia coli DH1]
gi|315284755|gb|EFU44200.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 110-3]
gi|315293200|gb|EFU52552.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 153-1]
gi|320176754|gb|EFW51788.1| ATP-dependent DNA helicase RecQ [Shigella dysenteriae CDC 74-1112]
gi|320179831|gb|EFW54778.1| ATP-dependent DNA helicase RecQ [Shigella boydii ATCC 9905]
gi|320191083|gb|EFW65733.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC1212]
gi|320639307|gb|EFX08929.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
G5101]
gi|320644692|gb|EFX13742.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H- str.
493-89]
gi|320650017|gb|EFX18520.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H- str. H
2687]
gi|320655364|gb|EFX23306.1| ATP-dependent DNA helicase RecQ [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320660989|gb|EFX28432.1| ATP-dependent DNA helicase RecQ [Escherichia coli O55:H7 str. USDA
5905]
gi|320666113|gb|EFX33127.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
LSU-61]
gi|323938957|gb|EGB35176.1| ATP-dependent DNA helicase RecQ [Escherichia coli E482]
gi|323949294|gb|EGB45184.1| ATP-dependent DNA helicase RecQ [Escherichia coli H252]
gi|323954029|gb|EGB49827.1| ATP-dependent DNA helicase RecQ [Escherichia coli H263]
gi|324115715|gb|EGC09650.1| ATP-dependent DNA helicase RecQ [Escherichia coli E1167]
gi|326344280|gb|EGD68040.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
1125]
gi|326347892|gb|EGD71606.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
1044]
gi|331036227|gb|EGI08462.1| ATP-dependent DNA helicase RecQ [Escherichia coli H736]
gi|331046829|gb|EGI18913.1| ATP-dependent DNA helicase RecQ [Escherichia coli M718]
gi|331057372|gb|EGI29361.1| ATP-dependent DNA helicase RecQ [Escherichia coli TA143]
gi|331067575|gb|EGI38979.1| ATP-dependent DNA helicase RecQ [Escherichia coli TA280]
gi|332105020|gb|EGJ08366.1| ATP-dependent DNA helicase recQ [Shigella sp. D9]
gi|341921413|gb|EGT71013.1| hypothetical protein C22711_5047 [Escherichia coli O104:H4 str.
C227-11]
gi|342929411|gb|EGU98133.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 79-10]
gi|349740455|gb|AEQ15161.1| ATP-dependent DNA helicase [Escherichia coli O7:K1 str. CE10]
gi|354857604|gb|EHF18058.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
C236-11]
gi|354861156|gb|EHF21596.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
C227-11]
gi|354862964|gb|EHF23400.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
04-8351]
gi|354870560|gb|EHF30963.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
09-7901]
gi|354876413|gb|EHF36774.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-3677]
gi|354885260|gb|EHF45564.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4404]
gi|354888660|gb|EHF48915.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4522]
gi|354892140|gb|EHF52353.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4623]
gi|354904405|gb|EHF64498.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C1]
gi|354907666|gb|EHF67724.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C2]
gi|354910042|gb|EHF70071.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C3]
gi|354912556|gb|EHF72556.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C4]
gi|354920351|gb|EHF80286.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C5]
gi|355349511|gb|EHF98716.1| ATP-dependent DNA helicase RecQ [Escherichia coli cloneA_i1]
gi|355422662|gb|AER86859.1| ATP-dependent DNA helicase RecQ [Escherichia coli str. 'clone D
i2']
gi|355427582|gb|AER91778.1| ATP-dependent DNA helicase RecQ [Escherichia coli str. 'clone D
i14']
gi|371591795|gb|EHN80734.1| ATP-dependent DNA helicase recQ [Escherichia coli H494]
gi|371602176|gb|EHN90887.1| ATP-dependent DNA helicase recQ [Escherichia coli H397]
gi|371609589|gb|EHN98126.1| ATP-dependent DNA helicase recQ [Escherichia coli E101]
gi|383476777|gb|EID68710.1| ATP-dependent DNA helicase RecQ [Escherichia coli W26]
gi|384376901|gb|EIE34801.1| ATP-dependent DNA helicase RecQ [Escherichia coli J53]
gi|384472213|gb|EIE56273.1| ATP-dependent DNA helicase RecQ [Escherichia coli AI27]
gi|385537533|gb|EIF84404.1| ATP-dependent DNA helicase recQ [Escherichia coli M919]
gi|385708484|gb|EIG45496.1| ATP-dependent DNA helicase recQ [Escherichia coli H730]
gi|386145721|gb|EIG92178.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.0246]
gi|386152885|gb|EIH04174.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5.0588]
gi|386165432|gb|EIH31952.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0497]
gi|386170387|gb|EIH42447.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0741]
gi|386219806|gb|EII36270.1| ATP-dependent DNA helicase RecQ [Escherichia coli 4.0967]
gi|386221361|gb|EII43805.1| ATP-dependent DNA helicase RecQ [Escherichia coli 2.3916]
gi|386234435|gb|EII66413.1| ATP-dependent DNA helicase RecQ [Escherichia coli 2.4168]
gi|386238032|gb|EII74972.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3.2303]
gi|386251828|gb|EIJ01520.1| ATP-dependent DNA helicase RecQ [Escherichia coli B41]
gi|386259703|gb|EIJ15177.1| ATP-dependent DNA helicase RecQ [Escherichia coli 900105 (10e)]
gi|386798508|gb|AFJ31542.1| ATP-dependent DNA helicase RecQ [Escherichia coli Xuzhou21]
gi|388409130|gb|EIL69452.1| ATP-dependent DNA helicase RecQ [Escherichia coli 541-1]
gi|388421322|gb|EIL80939.1| ATP-dependent DNA helicase RecQ [Escherichia coli HM605]
gi|408457407|gb|EKJ81203.1| ATP-dependent DNA helicase RecQ [Escherichia coli AD30]
gi|412965200|emb|CCK49130.1| ATP-dependent DNA helicase [Escherichia coli chi7122]
gi|412971785|emb|CCJ46450.1| ATP-dependent DNA helicase [Escherichia coli]
gi|429355564|gb|EKY92252.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02030]
gi|429355754|gb|EKY92439.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02033-1]
gi|429357134|gb|EKY93808.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02092]
gi|429371198|gb|EKZ07757.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02093]
gi|429371402|gb|EKZ07959.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02281]
gi|429375432|gb|EKZ11967.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02318]
gi|429387228|gb|EKZ23670.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02913]
gi|429389790|gb|EKZ26209.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-03439]
gi|429390496|gb|EKZ26908.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-03943]
gi|429400930|gb|EKZ37241.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-04080]
gi|429401897|gb|EKZ38191.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429404472|gb|EKZ40747.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429412703|gb|EKZ48894.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429415644|gb|EKZ51805.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429422963|gb|EKZ59072.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429427510|gb|EKZ63592.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429431815|gb|EKZ67858.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429439320|gb|EKZ75307.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429443687|gb|EKZ79637.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429448312|gb|EKZ84227.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429454076|gb|EKZ89941.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec12-0466]
gi|429458539|gb|EKZ94363.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-9941]
gi|430873088|gb|ELB96667.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE4]
gi|430883034|gb|ELC06041.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE5]
gi|430890837|gb|ELC13397.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE10]
gi|430903003|gb|ELC24748.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE16]
gi|430903107|gb|ELC24851.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE15]
gi|430913882|gb|ELC35001.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE21]
gi|430932536|gb|ELC52957.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE39]
gi|430935905|gb|ELC56200.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE44]
gi|430949889|gb|ELC69284.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE187]
gi|430959658|gb|ELC77969.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE188]
gi|430962773|gb|ELC80625.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE189]
gi|430970881|gb|ELC87926.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE191]
gi|430977239|gb|ELC94090.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE193]
gi|430978984|gb|ELC95773.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE201]
gi|431003540|gb|ELD19023.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE210]
gi|431013410|gb|ELD27143.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE212]
gi|431030698|gb|ELD43704.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE214]
gi|431034609|gb|ELD46535.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE220]
gi|431037921|gb|ELD48891.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE224]
gi|431047355|gb|ELD57356.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE230]
gi|431059796|gb|ELD69143.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE233]
gi|431096876|gb|ELE02331.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE53]
gi|431104206|gb|ELE08809.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE55]
gi|431111518|gb|ELE15417.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE56]
gi|431117383|gb|ELE20622.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE58]
gi|431125535|gb|ELE27937.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE60]
gi|431127306|gb|ELE29608.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE62]
gi|431144281|gb|ELE45988.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE67]
gi|431146062|gb|ELE47661.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE72]
gi|431160135|gb|ELE60653.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE77]
gi|431175867|gb|ELE75854.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE81]
gi|431177503|gb|ELE77427.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE86]
gi|431186593|gb|ELE86133.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE87]
gi|431188169|gb|ELE87668.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE93]
gi|431196510|gb|ELE95436.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE111]
gi|431207204|gb|ELF05474.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE119]
gi|431209667|gb|ELF07738.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE142]
gi|431218899|gb|ELF16324.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE156]
gi|431234396|gb|ELF29797.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE161]
gi|431239716|gb|ELF34188.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE169]
gi|431239876|gb|ELF34342.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE171]
gi|431278992|gb|ELF69963.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE42]
gi|431289696|gb|ELF80437.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE43]
gi|431293209|gb|ELF83589.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE29]
gi|431299667|gb|ELF89238.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE22]
gi|431321465|gb|ELG09066.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE50]
gi|431323834|gb|ELG11300.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE59]
gi|431325714|gb|ELG13095.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE63]
gi|431335017|gb|ELG22161.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE65]
gi|431335488|gb|ELG22626.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE78]
gi|431347763|gb|ELG34641.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE79]
gi|431352550|gb|ELG39319.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE91]
gi|431373433|gb|ELG59039.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE118]
gi|431377686|gb|ELG62812.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE123]
gi|431392085|gb|ELG75688.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE141]
gi|431400822|gb|ELG84186.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE146]
gi|431417427|gb|ELG99890.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE154]
gi|431427140|gb|ELH09183.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE194]
gi|431459357|gb|ELH39670.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE184]
gi|431459691|gb|ELH39983.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE183]
gi|431466733|gb|ELH46750.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE196]
gi|431467349|gb|ELH47359.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE202]
gi|431477546|gb|ELH57314.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE197]
gi|431478399|gb|ELH58147.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE207]
gi|431485180|gb|ELH64844.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE209]
gi|431493841|gb|ELH73433.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE215]
gi|431501796|gb|ELH80772.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE218]
gi|431504472|gb|ELH83098.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE223]
gi|431520867|gb|ELH98186.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE229]
gi|431521765|gb|ELH99004.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE227]
gi|431526226|gb|ELI02985.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE104]
gi|431530167|gb|ELI06852.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE106]
gi|431545604|gb|ELI20252.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE112]
gi|431547922|gb|ELI22215.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE113]
gi|431551988|gb|ELI25951.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE117]
gi|431561551|gb|ELI34918.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE120]
gi|431565593|gb|ELI38672.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE124]
gi|431577598|gb|ELI50229.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE125]
gi|431597335|gb|ELI67242.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE133]
gi|431600495|gb|ELI70165.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE137]
gi|431615751|gb|ELI84873.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE145]
gi|431630352|gb|ELI98689.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE153]
gi|431639691|gb|ELJ07541.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE160]
gi|431642027|gb|ELJ09753.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE163]
gi|431653007|gb|ELJ20124.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE166]
gi|431655382|gb|ELJ22415.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE167]
gi|431657099|gb|ELJ24067.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE168]
gi|431666796|gb|ELJ33421.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE174]
gi|431669744|gb|ELJ36113.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE176]
gi|431683122|gb|ELJ48761.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE179]
gi|431683735|gb|ELJ49363.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE180]
gi|431687667|gb|ELJ53211.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE232]
gi|431701585|gb|ELJ66500.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE88]
gi|431712921|gb|ELJ77188.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE90]
gi|431716632|gb|ELJ80739.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE94]
gi|431727917|gb|ELJ91647.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE97]
gi|431731295|gb|ELJ94801.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE99]
gi|441608587|emb|CCP95671.1| ATP-dependent DNA helicase RecQ [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|441715872|emb|CCQ04315.1| ATP-dependent DNA helicase RecQ [Escherichia coli Nissle 1917]
Length = 611
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|392556563|ref|ZP_10303700.1| ATP-dependent DNA helicase [Pseudoalteromonas undina NCIMB 2128]
Length = 607
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 149/375 (39%), Positives = 229/375 (61%), Gaps = 10/375 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ LK+ FGYS FR Q VI I +D LV++ TG GKS+CYQ+P LV +V+SPL
Sbjct: 17 TVLKQVFGYSEFRDGQSAVIDAAINGQDSLVLLPTGGGKSVCYQIPALVLEGVTIVISPL 76
Query: 63 ISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLMQDQV L+ G+ A ++ ++ + V + G +LL++ PEK ++ F
Sbjct: 77 ISLMQDQVTQLQALGVKAAYINNSLAREEQQLVYQQLHQGLIKLLYVAPEK--VLQREFL 134
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L V LFA+DEAHC+S WGHDFR Y +L++L+ VP +ALTATA + R DI
Sbjct: 135 ERLSHLNVSLFAIDEAHCVSHWGHDFRPHYFRLNELKQRFTHVPMMALTATADKATRFDI 194
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+ LKL+ PY+ SFDR N+ Y ++ + + V +L++ + + + +G I+YC + K
Sbjct: 195 VEQLKLQQPYIHTGSFDRPNIRYTIE--EKFKPMV-QLLRYLKEQKSQSG--IIYCTSRK 249
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V++I++ L G+ A YH M ++ R+ F RD+I+++VAT+AFGMGI+KP+VR
Sbjct: 250 RVDDIAEKLADAGLNAAAYHAGMSNEQRQFVQTGFARDDIQIVVATVAFGMGINKPNVRF 309
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V+HY PK++E+YYQE+GR GRDG+A+ +Y+ ++ + + + E +R +
Sbjct: 310 VLHYDIPKSIEAYYQETGRAGRDGLAAEAIMYFDPADIGRVRRFFEDIDDEQRRRVEEQR 369
Query: 360 LLAAQRYCLLTTCRR 374
A + TCRR
Sbjct: 370 FNAMASFAEAQTCRR 384
>gi|392546619|ref|ZP_10293756.1| ATP-dependent DNA helicase [Pseudoalteromonas rubra ATCC 29570]
Length = 604
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 153/373 (41%), Positives = 230/373 (61%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK+ FGYS FR Q DVIQ ++ RD LV++ TG GKSLCYQ+P L+ T +VVSPLIS
Sbjct: 16 LKEVFGYSDFRDGQLDVIQACLDGRDSLVLLPTGGGKSLCYQVPALILPGTCVVVSPLIS 75
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQT---KAETGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV L+ GI+AEF+ ++ + Q + G +LL++ PEK I+ F +
Sbjct: 76 LMQDQVAQLQALGISAEFINNSLDRAQQQAIYQRLHQGEIKLLYVAPEK--ILQSEFIER 133
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + LFA+DEAHC+S WGHDFR Y +L +L+ VP +ALTATA R DI+
Sbjct: 134 LSHLQLGLFAIDEAHCVSHWGHDFRPHYCRLHELKHRFASVPMMALTATADLATRSDIVT 193
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L+ P++ SFDR N+ Y ++ + S +L++ + +G IVYC + K V
Sbjct: 194 QLGLQTPFIHTGSFDRPNIRYTIEEKFKPLS---QLMRYLRTQKGQSG--IVYCSSRKRV 248
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
++I++ L + G A YH M ++ R+ F RD+I+++VAT+AFGMGI+K +VR+V+
Sbjct: 249 DDIAEKLVEAGFNAAAYHAGMSNEQRQFVQNAFARDDIQIVVATVAFGMGINKSNVRYVL 308
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
HY PK++E+YYQE+GR GRDG+A+ +Y+ ++ + + + + E++R +
Sbjct: 309 HYDIPKSIEAYYQETGRAGRDGLAAEAIMYFDPADIGRVKRFFEDIEDEHRRRVEEQRFS 368
Query: 362 AAQRYCLLTTCRR 374
+ + TCRR
Sbjct: 369 SMASFASAQTCRR 381
>gi|423459146|ref|ZP_17435943.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG5X2-1]
gi|401144224|gb|EJQ51754.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG5X2-1]
Length = 705
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 153/372 (41%), Positives = 225/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LMDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVREDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N+L + + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 NTLGINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLMKAGVSVSKYHAGMSDTDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSACILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|417684666|ref|ZP_12334002.1| ATP-dependent DNA helicase RecQ [Shigella boydii 3594-74]
gi|420327851|ref|ZP_14829589.1| ATP-dependent DNA helicase RecQ [Shigella flexneri CCH060]
gi|420355277|ref|ZP_14856349.1| ATP-dependent DNA helicase RecQ [Shigella boydii 4444-74]
gi|421684822|ref|ZP_16124603.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 1485-80]
gi|332088521|gb|EGI93637.1| ATP-dependent DNA helicase RecQ [Shigella boydii 3594-74]
gi|391245516|gb|EIQ04783.1| ATP-dependent DNA helicase RecQ [Shigella flexneri CCH060]
gi|391273146|gb|EIQ31974.1| ATP-dependent DNA helicase RecQ [Shigella boydii 4444-74]
gi|404335343|gb|EJZ61813.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 1485-80]
Length = 609
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|260846402|ref|YP_003224180.1| ATP-dependent DNA helicase RecQ [Escherichia coli O103:H2 str.
12009]
gi|419302912|ref|ZP_13844902.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC11C]
gi|419869038|ref|ZP_14391264.1| ATP-dependent DNA helicase RecQ [Escherichia coli O103:H2 str.
CVM9450]
gi|257761549|dbj|BAI33046.1| ATP-dependent DNA helicase RecQ [Escherichia coli O103:H2 str.
12009]
gi|378146097|gb|EHX07251.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC11C]
gi|388343371|gb|EIL09335.1| ATP-dependent DNA helicase RecQ [Escherichia coli O103:H2 str.
CVM9450]
Length = 609
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|218707455|ref|YP_002414974.1| ATP-dependent DNA helicase RecQ [Escherichia coli UMN026]
gi|417588964|ref|ZP_12239725.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_C165-02]
gi|218434552|emb|CAR15481.1| ATP-dependent DNA helicase [Escherichia coli UMN026]
gi|345331100|gb|EGW63561.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_C165-02]
Length = 609
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|110807486|ref|YP_691006.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 5 str. 8401]
gi|415859116|ref|ZP_11533441.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 2a str. 2457T]
gi|417704375|ref|ZP_12353472.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-218]
gi|417725388|ref|ZP_12374173.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-304]
gi|417730594|ref|ZP_12379278.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-671]
gi|417735693|ref|ZP_12384331.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 2747-71]
gi|417740471|ref|ZP_12389038.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 4343-70]
gi|417745522|ref|ZP_12394040.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 2930-71]
gi|420344000|ref|ZP_14845461.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-404]
gi|424839868|ref|ZP_18264505.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 5a str. M90T]
gi|110617034|gb|ABF05701.1| ATP-dependent DNA helicase [Shigella flexneri 5 str. 8401]
gi|313647133|gb|EFS11588.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 2a str. 2457T]
gi|332750946|gb|EGJ81351.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 4343-70]
gi|332751036|gb|EGJ81440.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-671]
gi|332752274|gb|EGJ82665.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 2747-71]
gi|332764332|gb|EGJ94567.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 2930-71]
gi|332998187|gb|EGK17790.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-218]
gi|333013511|gb|EGK32880.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-304]
gi|383468920|gb|EID63941.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 5a str. M90T]
gi|391262699|gb|EIQ21714.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-404]
Length = 609
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSRGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|312129258|ref|YP_003996598.1| ATP-dependent DNA helicase recq [Leadbetterella byssophila DSM
17132]
gi|311905804|gb|ADQ16245.1| ATP-dependent DNA helicase RecQ [Leadbetterella byssophila DSM
17132]
Length = 773
Score = 290 bits (743), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 158/378 (41%), Positives = 229/378 (60%), Gaps = 18/378 (4%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
LK+ FG+ FR Q+ +I+ +I ++ V+M TG+GKSLCYQLP V TA+V+SPLI
Sbjct: 13 NLKEIFGFDNFRGEQEKIIKSVISGKNTFVIMPTGAGKSLCYQLPATVLEGTAIVISPLI 72
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFWS 120
+LM++QV L GINA+FL S S V+ +G +LL++ PE +
Sbjct: 73 ALMKNQVDQLTAYGINAQFLNSTLNKSEMNRVKNDVISGVCKLLYIAPE--SLTKEDNLE 130
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQL-DKLRTFLLGVPFVALTATATEKVRIDI 179
L KA + AVDEAHCISEWGHDFR EY+++ D + +P VALTATAT KV++DI
Sbjct: 131 FLKKAKISFVAVDEAHCISEWGHDFRPEYRKIKDIIENIDTALPIVALTATATPKVQLDI 190
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
SL + + + SF+R NL+Y V+ Q+ +L++ + ++ +G IVYC++ K
Sbjct: 191 KKSLNMDDSVIFKTSFNRANLYYEVR---PKQNAKKQLIKFVSQNRGKSG--IVYCLSRK 245
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
VEEI++ L G KA YH + + R + F+ + ++VAT+AFGMGIDKPDVR
Sbjct: 246 KVEEIAELLNVNGFKALPYHAGLDPEVRMKNQDAFLNENCDIVVATIAFGMGIDKPDVRF 305
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGE---SQTENQRTAI 356
V+HY PK+LE YYQE+GR GRDGI C ++YA + K + + + ++ +N + +
Sbjct: 306 VVHYDAPKSLEGYYQETGRAGRDGIDGTCLMFYALDDITKLEKFNKDKNVTERDNAKALL 365
Query: 357 MESLLAAQRYCLLTTCRR 374
ME + Y L CRR
Sbjct: 366 MEMVA----YSSLGVCRR 379
>gi|417228931|ref|ZP_12030689.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5.0959]
gi|386208266|gb|EII12771.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5.0959]
Length = 611
Score = 290 bits (743), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLILISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|82546173|ref|YP_410120.1| ATP-dependent DNA helicase RecQ [Shigella boydii Sb227]
gi|416295404|ref|ZP_11651155.1| ATP-dependent DNA helicase RecQ [Shigella flexneri CDC 796-83]
gi|81247584|gb|ABB68292.1| ATP-dependent DNA helicase [Shigella boydii Sb227]
gi|320186210|gb|EFW60949.1| ATP-dependent DNA helicase RecQ [Shigella flexneri CDC 796-83]
Length = 611
Score = 290 bits (743), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|423407543|ref|ZP_17384692.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG2X1-3]
gi|401658869|gb|EJS76358.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG2X1-3]
Length = 705
Score = 290 bits (743), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 152/372 (40%), Positives = 226/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLLQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPKKPLVLALTATATPQVRDDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N+L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 NTLEINQENTIMTTFERENLSFSVV---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDE+ VM+AT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLGRAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMIATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSECILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|436838278|ref|YP_007323494.1| ATP-dependent DNA helicase RecQ [Fibrella aestuarina BUZ 2]
gi|384069691|emb|CCH02901.1| ATP-dependent DNA helicase RecQ [Fibrella aestuarina BUZ 2]
Length = 735
Score = 290 bits (743), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 227/373 (60%), Gaps = 11/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK+Y+GY FRP Q+ VI+ I+ RD +V+M TG GKS+C+Q+P L+ +VVSPLI+
Sbjct: 27 LKRYYGYDRFRPMQEAVIRSILSGRDTVVLMPTGGGKSVCFQIPALMQPGLCVVVSPLIA 86
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIPISFWSK 121
LM+DQV ++ GI A ++ S+Q ++ E G +LL+++PEK ++ SF++
Sbjct: 87 LMKDQVEAMHLNGIAAAYINSSQGAKEIRAVEENCRKGQIKLLYVSPEK--LLSESFYTF 144
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + +FA+DEAHCIS WGHDFR EY QL+ LR + VP +ALTATA R DI +
Sbjct: 145 LNSLKLSMFAIDEAHCISSWGHDFRPEYTQLNTLRRWFPNVPIIALTATADRLTRQDIAD 204
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L + +P V I SF+R NL ++V+ G + + ++ + L S+ S I+YC++ K
Sbjct: 205 RLAMHDPAVFIDSFNRTNL--SLQVLP-GTNRIGQIAK--LLSLKPDTSGIIYCLSRKSC 259
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E ++ L + G A YH M R F+RD++R+M AT+AFGMGIDK +VR V+
Sbjct: 260 ESVAAKLIEKGYSAAYYHAGMDPNERARVQEAFLRDDVRIMCATIAFGMGIDKSNVRWVM 319
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
HY PK +E YYQE GR GRDG+ S L+Y+ ++ A E+ N + + + L
Sbjct: 320 HYNMPKNIEGYYQEIGRAGRDGLPSQTVLFYSFADVATYKDMLTENNPANLQVQLAK-LE 378
Query: 362 AAQRYCLLTTCRR 374
Q+Y TCRR
Sbjct: 379 RMQQYAEANTCRR 391
>gi|293413264|ref|ZP_06655926.1| ATP-dependent DNA helicase RecQ [Escherichia coli B354]
gi|291468212|gb|EFF10709.1| ATP-dependent DNA helicase RecQ [Escherichia coli B354]
Length = 609
Score = 290 bits (743), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNSLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENNIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|74314334|ref|YP_312753.1| ATP-dependent DNA helicase RecQ [Shigella sonnei Ss046]
gi|157163298|ref|YP_001460616.1| ATP-dependent DNA helicase RecQ [Escherichia coli HS]
gi|162135918|ref|YP_026263.3| ATP-dependent DNA helicase [Escherichia coli str. K-12 substr.
MG1655]
gi|170083303|ref|YP_001732623.1| ATP-dependent DNA helicase RecQ [Escherichia coli str. K-12 substr.
DH10B]
gi|187734194|ref|YP_001882520.1| ATP-dependent DNA helicase RecQ [Shigella boydii CDC 3083-94]
gi|188494940|ref|ZP_03002210.1| ATP-dependent DNA helicase RecQ [Escherichia coli 53638]
gi|218697543|ref|YP_002405210.1| ATP-dependent DNA helicase RecQ [Escherichia coli 55989]
gi|218701485|ref|YP_002409114.1| ATP-dependent DNA helicase RecQ [Escherichia coli IAI39]
gi|222158515|ref|YP_002558654.1| ATP-dependent DNA helicase recQ [Escherichia coli LF82]
gi|238902897|ref|YP_002928693.1| ATP-dependent DNA helicase RecQ [Escherichia coli BW2952]
gi|254795820|ref|YP_003080657.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
TW14359]
gi|260857772|ref|YP_003231663.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
11368]
gi|293468140|ref|ZP_06664552.1| ATP-dependent DNA helicase RecQ [Escherichia coli B088]
gi|383181074|ref|YP_005459079.1| ATP-dependent DNA helicase RecQ [Shigella sonnei 53G]
gi|386601849|ref|YP_006103355.1| ATP-dependent DNA helicase RecQ [Escherichia coli IHE3034]
gi|386616632|ref|YP_006136298.1| ATP-dependent DNA helicase RecQ [Escherichia coli UMNK88]
gi|386641456|ref|YP_006108254.1| ATP-dependent DNA helicase RecQ [Escherichia coli ABU 83972]
gi|387509272|ref|YP_006161528.1| ATP-dependent DNA helicase RecQ [Escherichia coli O55:H7 str.
RM12579]
gi|387609630|ref|YP_006098486.1| ATP-dependent DNA helicase [Escherichia coli 042]
gi|388479428|ref|YP_491620.1| ATP-dependent DNA helicase [Escherichia coli str. K-12 substr.
W3110]
gi|407466829|ref|YP_006786729.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407484445|ref|YP_006781595.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
2011C-3493]
gi|410484991|ref|YP_006772537.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
2009EL-2050]
gi|414578705|ref|ZP_11435867.1| ATP-dependent DNA helicase RecQ [Shigella sonnei 3233-85]
gi|415773800|ref|ZP_11486365.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3431]
gi|415786023|ref|ZP_11493337.1| ATP-dependent DNA helicase RecQ [Escherichia coli EPECa14]
gi|415811064|ref|ZP_11503414.1| ATP-dependent DNA helicase RecQ [Escherichia coli LT-68]
gi|415846355|ref|ZP_11525434.1| ATP-dependent DNA helicase RecQ [Shigella sonnei 53G]
gi|417583446|ref|ZP_12234244.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_B2F1]
gi|417615484|ref|ZP_12265932.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_EH250]
gi|417620493|ref|ZP_12270894.1| ATP-dependent DNA helicase RecQ [Escherichia coli G58-1]
gi|417631303|ref|ZP_12281535.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_MHI813]
gi|417636778|ref|ZP_12286983.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_S1191]
gi|417641842|ref|ZP_12291966.1| ATP-dependent DNA helicase RecQ [Escherichia coli TX1999]
gi|417675001|ref|ZP_12324430.1| ATP-dependent DNA helicase RecQ [Shigella dysenteriae 155-74]
gi|417709647|ref|ZP_12358664.1| ATP-dependent DNA helicase RecQ [Shigella flexneri VA-6]
gi|417807513|ref|ZP_12454440.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
LB226692]
gi|417829992|ref|ZP_12476531.1| ATP-dependent DNA helicase RecQ [Shigella flexneri J1713]
gi|417835254|ref|ZP_12481693.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
01-09591]
gi|417945670|ref|ZP_12588900.1| ATP-dependent DNA helicase RecQ [Escherichia coli XH140A]
gi|417977689|ref|ZP_12618470.1| ATP-dependent DNA helicase RecQ [Escherichia coli XH001]
gi|418269891|ref|ZP_12888068.1| ATP-dependent DNA helicase RecQ [Shigella sonnei str. Moseley]
gi|418305454|ref|ZP_12917248.1| ATP-dependent DNA helicase RecQ [Escherichia coli UMNF18]
gi|419043191|ref|ZP_13590168.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3A]
gi|419053701|ref|ZP_13600566.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3B]
gi|419059737|ref|ZP_13606535.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3C]
gi|419065783|ref|ZP_13612482.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3D]
gi|419072168|ref|ZP_13617765.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3E]
gi|419077975|ref|ZP_13623471.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3F]
gi|419083146|ref|ZP_13628587.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4A]
gi|419089130|ref|ZP_13634478.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4B]
gi|419094916|ref|ZP_13640190.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4C]
gi|419100733|ref|ZP_13645918.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4D]
gi|419101663|ref|ZP_13646838.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4E]
gi|419112709|ref|ZP_13657750.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4F]
gi|419117387|ref|ZP_13662394.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5A]
gi|419123336|ref|ZP_13668272.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5B]
gi|419128635|ref|ZP_13673503.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5C]
gi|419134045|ref|ZP_13678868.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5D]
gi|419139187|ref|ZP_13683976.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5E]
gi|419144930|ref|ZP_13689656.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6A]
gi|419150857|ref|ZP_13695502.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6B]
gi|419156337|ref|ZP_13700890.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6C]
gi|419161695|ref|ZP_13706184.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6D]
gi|419166788|ref|ZP_13711235.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6E]
gi|419172782|ref|ZP_13716653.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7A]
gi|419177507|ref|ZP_13721313.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7B]
gi|419183343|ref|ZP_13726948.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7C]
gi|419188957|ref|ZP_13732459.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7D]
gi|419193893|ref|ZP_13737331.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7E]
gi|419212347|ref|ZP_13755409.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC8C]
gi|419218190|ref|ZP_13761179.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC8D]
gi|419229300|ref|ZP_13772135.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9A]
gi|419235104|ref|ZP_13777867.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9B]
gi|419240508|ref|ZP_13783209.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9C]
gi|419245923|ref|ZP_13788552.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9D]
gi|419251927|ref|ZP_13794490.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9E]
gi|419257379|ref|ZP_13799876.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10A]
gi|419263508|ref|ZP_13805912.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10B]
gi|419264798|ref|ZP_13807187.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10C]
gi|419270449|ref|ZP_13812783.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10D]
gi|419286604|ref|ZP_13828763.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10F]
gi|419292039|ref|ZP_13834121.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC11A]
gi|419297319|ref|ZP_13839353.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC11B]
gi|419308855|ref|ZP_13850743.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC11D]
gi|419393861|ref|ZP_13934658.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15A]
gi|419399220|ref|ZP_13939979.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15B]
gi|419404466|ref|ZP_13945182.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15C]
gi|419409630|ref|ZP_13950311.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15D]
gi|419415188|ref|ZP_13955818.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15E]
gi|419812399|ref|ZP_14337266.1| ATP-dependent DNA helicase RecQ [Escherichia coli O32:H37 str. P4]
gi|419874689|ref|ZP_14396603.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CVM9534]
gi|419879645|ref|ZP_14401076.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CVM9545]
gi|419902626|ref|ZP_14421829.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM9942]
gi|419905653|ref|ZP_14424609.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM10026]
gi|420099093|ref|ZP_14610339.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CVM9455]
gi|420110650|ref|ZP_14620605.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CVM9553]
gi|420113527|ref|ZP_14623259.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM10021]
gi|420119768|ref|ZP_14629022.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM10030]
gi|420126752|ref|ZP_14635465.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM10224]
gi|420131499|ref|ZP_14639935.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM9952]
gi|420272370|ref|ZP_14774716.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA22]
gi|420277955|ref|ZP_14780233.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA40]
gi|420283156|ref|ZP_14785386.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW06591]
gi|420284102|ref|ZP_14786323.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW10246]
gi|420289859|ref|ZP_14792029.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW11039]
gi|420300926|ref|ZP_14802968.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW09109]
gi|420306852|ref|ZP_14808837.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW10119]
gi|420312140|ref|ZP_14814065.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1738]
gi|420317897|ref|ZP_14819765.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1734]
gi|420322644|ref|ZP_14824463.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 2850-71]
gi|420333543|ref|ZP_14835179.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-1770]
gi|420349685|ref|ZP_14851058.1| ATP-dependent DNA helicase RecQ [Shigella boydii 965-58]
gi|420361261|ref|ZP_14862203.1| ATP-dependent DNA helicase RecQ [Shigella sonnei 3226-85]
gi|420365796|ref|ZP_14866655.1| ATP-dependent DNA helicase RecQ [Shigella sonnei 4822-66]
gi|420382758|ref|ZP_14882188.1| ATP-dependent DNA helicase RecQ [Shigella dysenteriae 225-75]
gi|421814877|ref|ZP_16250576.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.0416]
gi|421820625|ref|ZP_16256107.1| ATP-dependent DNA helicase RecQ [Escherichia coli 10.0821]
gi|421826602|ref|ZP_16261954.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK920]
gi|421833458|ref|ZP_16268735.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA7]
gi|423728051|ref|ZP_17701830.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA31]
gi|424080156|ref|ZP_17817094.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA505]
gi|424086551|ref|ZP_17823020.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA517]
gi|424092965|ref|ZP_17828872.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1996]
gi|424099656|ref|ZP_17834892.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1985]
gi|424105849|ref|ZP_17840562.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1990]
gi|424112488|ref|ZP_17846698.1| ATP-dependent DNA helicase RecQ [Escherichia coli 93-001]
gi|424118422|ref|ZP_17852240.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA3]
gi|424124621|ref|ZP_17857901.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA5]
gi|424130785|ref|ZP_17863671.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA9]
gi|424137098|ref|ZP_17869517.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA10]
gi|424143655|ref|ZP_17875490.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA14]
gi|424150024|ref|ZP_17881383.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA15]
gi|424163751|ref|ZP_17886802.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA24]
gi|424257401|ref|ZP_17892343.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA25]
gi|424336089|ref|ZP_17898279.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA28]
gi|424452358|ref|ZP_17903983.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA32]
gi|424458522|ref|ZP_17909602.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA33]
gi|424465052|ref|ZP_17915355.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA39]
gi|424471287|ref|ZP_17921068.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA41]
gi|424477774|ref|ZP_17927073.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA42]
gi|424483558|ref|ZP_17932522.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW07945]
gi|424489753|ref|ZP_17938273.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW09098]
gi|424496448|ref|ZP_17943963.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW09195]
gi|424503074|ref|ZP_17949941.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4203]
gi|424509345|ref|ZP_17955696.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4196]
gi|424516755|ref|ZP_17961322.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW14313]
gi|424522879|ref|ZP_17966967.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW14301]
gi|424528750|ref|ZP_17972445.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4421]
gi|424534892|ref|ZP_17978224.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4422]
gi|424540980|ref|ZP_17983908.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4013]
gi|424547130|ref|ZP_17989443.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4402]
gi|424553325|ref|ZP_17995135.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4439]
gi|424559526|ref|ZP_18000903.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4436]
gi|424565847|ref|ZP_18006833.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4437]
gi|424571976|ref|ZP_18012493.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4448]
gi|424578134|ref|ZP_18018151.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1845]
gi|424583956|ref|ZP_18023586.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1863]
gi|424746311|ref|ZP_18174557.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424756582|ref|ZP_18184393.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CFSAN001630]
gi|425100630|ref|ZP_18503350.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3.4870]
gi|425106704|ref|ZP_18509003.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5.2239]
gi|425112706|ref|ZP_18514611.1| ATP-dependent DNA helicase RecQ [Escherichia coli 6.0172]
gi|425117443|ref|ZP_18519216.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.0566]
gi|425122162|ref|ZP_18523834.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.0569]
gi|425128636|ref|ZP_18529790.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.0586]
gi|425134402|ref|ZP_18535238.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.2524]
gi|425140995|ref|ZP_18541361.1| ATP-dependent DNA helicase RecQ [Escherichia coli 10.0833]
gi|425146671|ref|ZP_18546648.1| ATP-dependent DNA helicase RecQ [Escherichia coli 10.0869]
gi|425152786|ref|ZP_18552384.1| ATP-dependent DNA helicase RecQ [Escherichia coli 88.0221]
gi|425158685|ref|ZP_18557932.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA34]
gi|425165005|ref|ZP_18563876.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA506]
gi|425170752|ref|ZP_18569210.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA507]
gi|425176796|ref|ZP_18574900.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA504]
gi|425182855|ref|ZP_18580536.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1999]
gi|425189156|ref|ZP_18586411.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1997]
gi|425195883|ref|ZP_18592638.1| ATP-dependent DNA helicase RecQ [Escherichia coli NE1487]
gi|425202362|ref|ZP_18598555.1| ATP-dependent DNA helicase RecQ [Escherichia coli NE037]
gi|425208739|ref|ZP_18604521.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK2001]
gi|425214496|ref|ZP_18609883.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA4]
gi|425220623|ref|ZP_18615570.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA23]
gi|425227269|ref|ZP_18621720.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA49]
gi|425233426|ref|ZP_18627450.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA45]
gi|425239348|ref|ZP_18633053.1| ATP-dependent DNA helicase RecQ [Escherichia coli TT12B]
gi|425245582|ref|ZP_18638874.1| ATP-dependent DNA helicase RecQ [Escherichia coli MA6]
gi|425251778|ref|ZP_18644706.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5905]
gi|425257577|ref|ZP_18650057.1| ATP-dependent DNA helicase RecQ [Escherichia coli CB7326]
gi|425263832|ref|ZP_18655808.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC96038]
gi|425269824|ref|ZP_18661435.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5412]
gi|425275115|ref|ZP_18666494.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW15901]
gi|425285691|ref|ZP_18676703.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW00353]
gi|425291039|ref|ZP_18681846.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3006]
gi|425297302|ref|ZP_18687410.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA38]
gi|425313995|ref|ZP_18703147.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1735]
gi|425319977|ref|ZP_18708738.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1736]
gi|425326116|ref|ZP_18714427.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1737]
gi|425332427|ref|ZP_18720224.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1846]
gi|425338604|ref|ZP_18725927.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1847]
gi|425344898|ref|ZP_18731771.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1848]
gi|425350737|ref|ZP_18737180.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1849]
gi|425357009|ref|ZP_18743055.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1850]
gi|425362958|ref|ZP_18748590.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1856]
gi|425369225|ref|ZP_18754286.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1862]
gi|425375530|ref|ZP_18760154.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1864]
gi|425382165|ref|ZP_18766145.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1865]
gi|425388417|ref|ZP_18771960.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1866]
gi|425395144|ref|ZP_18778235.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1868]
gi|425401199|ref|ZP_18783889.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1869]
gi|425407294|ref|ZP_18789499.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1870]
gi|425413652|ref|ZP_18795398.1| ATP-dependent DNA helicase RecQ [Escherichia coli NE098]
gi|425419968|ref|ZP_18801223.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK523]
gi|425431264|ref|ZP_18811857.1| ATP-dependent DNA helicase RecQ [Escherichia coli 0.1304]
gi|428949672|ref|ZP_19021928.1| ATP-dependent DNA helicase RecQ [Escherichia coli 88.1467]
gi|428955744|ref|ZP_19027518.1| ATP-dependent DNA helicase RecQ [Escherichia coli 88.1042]
gi|428961768|ref|ZP_19033029.1| ATP-dependent DNA helicase RecQ [Escherichia coli 89.0511]
gi|428968370|ref|ZP_19039058.1| ATP-dependent DNA helicase RecQ [Escherichia coli 90.0091]
gi|428974146|ref|ZP_19044441.1| ATP-dependent DNA helicase RecQ [Escherichia coli 90.0039]
gi|428980535|ref|ZP_19050328.1| ATP-dependent DNA helicase RecQ [Escherichia coli 90.2281]
gi|428986311|ref|ZP_19055684.1| ATP-dependent DNA helicase RecQ [Escherichia coli 93.0055]
gi|428992459|ref|ZP_19061431.1| ATP-dependent DNA helicase RecQ [Escherichia coli 93.0056]
gi|428998356|ref|ZP_19066931.1| ATP-dependent DNA helicase RecQ [Escherichia coli 94.0618]
gi|429004744|ref|ZP_19072788.1| ATP-dependent DNA helicase RecQ [Escherichia coli 95.0183]
gi|429010783|ref|ZP_19078163.1| ATP-dependent DNA helicase RecQ [Escherichia coli 95.1288]
gi|429017247|ref|ZP_19084107.1| ATP-dependent DNA helicase RecQ [Escherichia coli 95.0943]
gi|429023086|ref|ZP_19089586.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0428]
gi|429029170|ref|ZP_19095125.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0427]
gi|429035310|ref|ZP_19100818.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0939]
gi|429041420|ref|ZP_19106492.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0932]
gi|429047246|ref|ZP_19111942.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0107]
gi|429052597|ref|ZP_19117153.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.0003]
gi|429058154|ref|ZP_19122396.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.1742]
gi|429063674|ref|ZP_19127630.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.0007]
gi|429069876|ref|ZP_19133298.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0672]
gi|429075653|ref|ZP_19138895.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0678]
gi|429080853|ref|ZP_19143978.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0713]
gi|429829081|ref|ZP_19360059.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0109]
gi|429835546|ref|ZP_19365772.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.0010]
gi|443619893|ref|YP_007383749.1| ATP-dependent DNA helicase RecQ [Escherichia coli APEC O78]
gi|444927567|ref|ZP_21246820.1| ATP-dependent DNA helicase RecQ [Escherichia coli 09BKT078844]
gi|444933176|ref|ZP_21252172.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0814]
gi|444938639|ref|ZP_21257361.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0815]
gi|444944245|ref|ZP_21262719.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0816]
gi|444949646|ref|ZP_21267927.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0839]
gi|444955383|ref|ZP_21273438.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0848]
gi|444960749|ref|ZP_21278560.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1753]
gi|444965954|ref|ZP_21283505.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1775]
gi|444972010|ref|ZP_21289338.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1793]
gi|444977298|ref|ZP_21294364.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1805]
gi|444982637|ref|ZP_21299533.1| ATP-dependent DNA helicase RecQ [Escherichia coli ATCC 700728]
gi|444988047|ref|ZP_21304814.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA11]
gi|444993429|ref|ZP_21310059.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA19]
gi|444998607|ref|ZP_21315096.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA13]
gi|445004152|ref|ZP_21320531.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA2]
gi|445009571|ref|ZP_21325789.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA47]
gi|445014650|ref|ZP_21330744.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA48]
gi|445020572|ref|ZP_21336526.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA8]
gi|445025933|ref|ZP_21341746.1| ATP-dependent DNA helicase RecQ [Escherichia coli 7.1982]
gi|445031388|ref|ZP_21347043.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1781]
gi|445036812|ref|ZP_21352329.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1762]
gi|445042490|ref|ZP_21357851.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA35]
gi|445047694|ref|ZP_21362931.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3.4880]
gi|445061301|ref|ZP_21373807.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0670]
gi|450226865|ref|ZP_21897539.1| ATP-dependent DNA helicase RecQ [Escherichia coli O08]
gi|450252923|ref|ZP_21902297.1| ATP-dependent DNA helicase RecQ [Escherichia coli S17]
gi|54041622|sp|P15043.5|RECQ_ECOLI RecName: Full=ATP-dependent DNA helicase RecQ
gi|48994977|gb|AAT48221.1| ATP-dependent DNA helicase [Escherichia coli str. K-12 substr.
MG1655]
gi|73857811|gb|AAZ90518.1| ATP-dependent DNA helicase [Shigella sonnei Ss046]
gi|85676229|dbj|BAE77479.1| ATP-dependent DNA helicase [Escherichia coli str. K12 substr.
W3110]
gi|157068978|gb|ABV08233.1| ATP-dependent DNA helicase RecQ [Escherichia coli HS]
gi|169891138|gb|ACB04845.1| ATP-dependent DNA helicase [Escherichia coli str. K-12 substr.
DH10B]
gi|187431186|gb|ACD10460.1| ATP-dependent DNA helicase RecQ [Shigella boydii CDC 3083-94]
gi|188490139|gb|EDU65242.1| ATP-dependent DNA helicase RecQ [Escherichia coli 53638]
gi|218354275|emb|CAV00962.1| ATP-dependent DNA helicase [Escherichia coli 55989]
gi|218371471|emb|CAR19306.1| ATP-dependent DNA helicase [Escherichia coli IAI39]
gi|222035520|emb|CAP78265.1| ATP-dependent DNA helicase recQ [Escherichia coli LF82]
gi|238860042|gb|ACR62040.1| ATP-dependent DNA helicase [Escherichia coli BW2952]
gi|254595220|gb|ACT74581.1| ATP-dependent DNA helicase [Escherichia coli O157:H7 str. TW14359]
gi|257756421|dbj|BAI27923.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
11368]
gi|284923930|emb|CBG37029.1| ATP-dependent DNA helicase [Escherichia coli 042]
gi|291321518|gb|EFE60956.1| ATP-dependent DNA helicase RecQ [Escherichia coli B088]
gi|294490610|gb|ADE89366.1| ATP-dependent DNA helicase RecQ [Escherichia coli IHE3034]
gi|307555948|gb|ADN48723.1| ATP-dependent DNA helicase RecQ [Escherichia coli ABU 83972]
gi|315618731|gb|EFU99316.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3431]
gi|323155231|gb|EFZ41415.1| ATP-dependent DNA helicase RecQ [Escherichia coli EPECa14]
gi|323167577|gb|EFZ53283.1| ATP-dependent DNA helicase RecQ [Shigella sonnei 53G]
gi|323173439|gb|EFZ59068.1| ATP-dependent DNA helicase RecQ [Escherichia coli LT-68]
gi|332084978|gb|EGI90160.1| ATP-dependent DNA helicase RecQ [Shigella dysenteriae 155-74]
gi|332345801|gb|AEE59135.1| ATP-dependent DNA helicase RecQ [Escherichia coli UMNK88]
gi|332996969|gb|EGK16587.1| ATP-dependent DNA helicase RecQ [Shigella flexneri VA-6]
gi|335573445|gb|EGM59800.1| ATP-dependent DNA helicase RecQ [Shigella flexneri J1713]
gi|339417552|gb|AEJ59224.1| ATP-dependent DNA helicase RecQ [Escherichia coli UMNF18]
gi|340731834|gb|EGR60973.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
01-09591]
gi|340737771|gb|EGR72025.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
LB226692]
gi|342362570|gb|EGU26687.1| ATP-dependent DNA helicase RecQ [Escherichia coli XH140A]
gi|344192682|gb|EGV46771.1| ATP-dependent DNA helicase RecQ [Escherichia coli XH001]
gi|345333780|gb|EGW66227.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_B2F1]
gi|345357660|gb|EGW89852.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_EH250]
gi|345369561|gb|EGX01544.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_MHI813]
gi|345369710|gb|EGX01692.1| ATP-dependent DNA helicase RecQ [Escherichia coli G58-1]
gi|345384846|gb|EGX14704.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_S1191]
gi|345389797|gb|EGX19598.1| ATP-dependent DNA helicase RecQ [Escherichia coli TX1999]
gi|359333954|dbj|BAL40401.1| ATP-dependent DNA helicase [Escherichia coli str. K-12 substr.
MDS42]
gi|374361266|gb|AEZ42973.1| ATP-dependent DNA helicase RecQ [Escherichia coli O55:H7 str.
RM12579]
gi|377889383|gb|EHU53847.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3B]
gi|377900947|gb|EHU65271.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3A]
gi|377901914|gb|EHU66224.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3C]
gi|377903769|gb|EHU68059.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3D]
gi|377906294|gb|EHU70540.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3E]
gi|377916995|gb|EHU81064.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3F]
gi|377923006|gb|EHU86977.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4A]
gi|377926673|gb|EHU90603.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4B]
gi|377937309|gb|EHV01090.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4D]
gi|377937816|gb|EHV01589.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4C]
gi|377952265|gb|EHV15861.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4F]
gi|377957081|gb|EHV20618.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4E]
gi|377957368|gb|EHV20903.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5A]
gi|377960982|gb|EHV24457.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5B]
gi|377969378|gb|EHV32756.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5C]
gi|377970401|gb|EHV33763.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5D]
gi|377980238|gb|EHV43504.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5E]
gi|377988783|gb|EHV51958.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6B]
gi|377989115|gb|EHV52284.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6A]
gi|377992641|gb|EHV55787.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6C]
gi|378003621|gb|EHV66662.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6D]
gi|378006269|gb|EHV69255.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6E]
gi|378010076|gb|EHV73023.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7A]
gi|378020960|gb|EHV83688.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7C]
gi|378023963|gb|EHV86628.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7D]
gi|378028415|gb|EHV91033.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7B]
gi|378035128|gb|EHV97690.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7E]
gi|378048184|gb|EHW10539.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC8C]
gi|378057740|gb|EHW19963.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC8D]
gi|378068432|gb|EHW30533.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9A]
gi|378073450|gb|EHW35501.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9B]
gi|378078658|gb|EHW40639.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9C]
gi|378086522|gb|EHW48397.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9D]
gi|378088985|gb|EHW50834.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9E]
gi|378096895|gb|EHW58661.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10A]
gi|378102153|gb|EHW63835.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10B]
gi|378119748|gb|EHW81237.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10C]
gi|378121916|gb|EHW83364.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10D]
gi|378124653|gb|EHW86058.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC11A]
gi|378125192|gb|EHW86594.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10F]
gi|378138180|gb|EHW99439.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC11B]
gi|378144053|gb|EHX05229.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC11D]
gi|378233768|gb|EHX93852.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15A]
gi|378239942|gb|EHX99919.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15B]
gi|378242825|gb|EHY02776.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15C]
gi|378250902|gb|EHY10804.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15D]
gi|378255628|gb|EHY15485.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15E]
gi|385154769|gb|EIF16778.1| ATP-dependent DNA helicase RecQ [Escherichia coli O32:H37 str. P4]
gi|388350582|gb|EIL15941.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CVM9534]
gi|388370946|gb|EIL34439.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CVM9545]
gi|388373611|gb|EIL36859.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM9942]
gi|388380812|gb|EIL43394.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM10026]
gi|390637133|gb|EIN16689.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1996]
gi|390637513|gb|EIN17059.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA505]
gi|390638307|gb|EIN17820.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA517]
gi|390655763|gb|EIN33679.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1985]
gi|390656665|gb|EIN34525.1| ATP-dependent DNA helicase RecQ [Escherichia coli 93-001]
gi|390659431|gb|EIN37196.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1990]
gi|390673956|gb|EIN50168.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA3]
gi|390677280|gb|EIN53339.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA5]
gi|390680714|gb|EIN56541.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA9]
gi|390691815|gb|EIN66538.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA10]
gi|390696174|gb|EIN70668.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA14]
gi|390697410|gb|EIN71830.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA15]
gi|390711245|gb|EIN84228.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA22]
gi|390717538|gb|EIN90322.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA24]
gi|390718182|gb|EIN90940.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA25]
gi|390724300|gb|EIN96860.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA28]
gi|390736865|gb|EIO08185.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA31]
gi|390737487|gb|EIO08782.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA32]
gi|390741100|gb|EIO12195.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA33]
gi|390755766|gb|EIO25297.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA40]
gi|390758421|gb|EIO27875.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA39]
gi|390761852|gb|EIO31126.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA41]
gi|390764847|gb|EIO34042.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA42]
gi|390779055|gb|EIO46792.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW06591]
gi|390786025|gb|EIO53561.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW07945]
gi|390796590|gb|EIO63861.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW10246]
gi|390799973|gb|EIO67092.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW09098]
gi|390803163|gb|EIO70187.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW11039]
gi|390804554|gb|EIO71520.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW09109]
gi|390813588|gb|EIO80198.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW10119]
gi|390821916|gb|EIO88072.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW09195]
gi|390822385|gb|EIO88509.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4203]
gi|390827531|gb|EIO93291.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4196]
gi|390840654|gb|EIP04669.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW14313]
gi|390842695|gb|EIP06532.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW14301]
gi|390847735|gb|EIP11259.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4421]
gi|390858215|gb|EIP20623.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4422]
gi|390862503|gb|EIP24686.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4013]
gi|390866548|gb|EIP28505.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4402]
gi|390874830|gb|EIP35918.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4439]
gi|390880191|gb|EIP40894.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4436]
gi|390890079|gb|EIP49765.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4437]
gi|390891420|gb|EIP51051.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4448]
gi|390897852|gb|EIP57152.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1738]
gi|390905830|gb|EIP64755.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1734]
gi|390915489|gb|EIP74001.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1845]
gi|390915828|gb|EIP74328.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1863]
gi|391244920|gb|EIQ04196.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 2850-71]
gi|391245159|gb|EIQ04433.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-1770]
gi|391265596|gb|EIQ24564.1| ATP-dependent DNA helicase RecQ [Shigella boydii 965-58]
gi|391277456|gb|EIQ36200.1| ATP-dependent DNA helicase RecQ [Shigella sonnei 3226-85]
gi|391280624|gb|EIQ39291.1| ATP-dependent DNA helicase RecQ [Shigella sonnei 3233-85]
gi|391291630|gb|EIQ50010.1| ATP-dependent DNA helicase RecQ [Shigella sonnei 4822-66]
gi|391297979|gb|EIQ56004.1| ATP-dependent DNA helicase RecQ [Shigella dysenteriae 225-75]
gi|394391248|gb|EJE68134.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM10224]
gi|394402810|gb|EJE78500.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CVM9553]
gi|394411617|gb|EJE85840.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM10021]
gi|394423765|gb|EJE96980.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CVM9455]
gi|394430839|gb|EJF03117.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM10030]
gi|394431778|gb|EJF03941.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM9952]
gi|397894923|gb|EJL11359.1| ATP-dependent DNA helicase RecQ [Shigella sonnei str. Moseley]
gi|406780153|gb|AFS59577.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407056742|gb|AFS76793.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
2011C-3493]
gi|407062864|gb|AFS83911.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408061419|gb|EKG95938.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA7]
gi|408063920|gb|EKG98407.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK920]
gi|408065096|gb|EKG99572.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA34]
gi|408075235|gb|EKH09473.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA506]
gi|408080230|gb|EKH14314.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA507]
gi|408088415|gb|EKH21787.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA504]
gi|408094586|gb|EKH27603.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1999]
gi|408100770|gb|EKH33252.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1997]
gi|408105693|gb|EKH37840.1| ATP-dependent DNA helicase RecQ [Escherichia coli NE1487]
gi|408112433|gb|EKH44083.1| ATP-dependent DNA helicase RecQ [Escherichia coli NE037]
gi|408118686|gb|EKH49805.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK2001]
gi|408125003|gb|EKH55643.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA4]
gi|408134793|gb|EKH64609.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA23]
gi|408136802|gb|EKH66532.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA49]
gi|408143753|gb|EKH73027.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA45]
gi|408152134|gb|EKH80583.1| ATP-dependent DNA helicase RecQ [Escherichia coli TT12B]
gi|408157176|gb|EKH85342.1| ATP-dependent DNA helicase RecQ [Escherichia coli MA6]
gi|408161220|gb|EKH89191.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5905]
gi|408170320|gb|EKH97532.1| ATP-dependent DNA helicase RecQ [Escherichia coli CB7326]
gi|408177268|gb|EKI04083.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC96038]
gi|408180273|gb|EKI06898.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5412]
gi|408189631|gb|EKI15342.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW15901]
gi|408197818|gb|EKI23069.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW00353]
gi|408208793|gb|EKI33413.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3006]
gi|408210666|gb|EKI35226.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA38]
gi|408223507|gb|EKI47276.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1735]
gi|408234880|gb|EKI57873.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1736]
gi|408237737|gb|EKI60587.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1737]
gi|408242911|gb|EKI65462.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1846]
gi|408251792|gb|EKI73509.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1847]
gi|408256146|gb|EKI77539.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1848]
gi|408262801|gb|EKI83715.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1849]
gi|408271059|gb|EKI91208.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1850]
gi|408274185|gb|EKI94210.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1856]
gi|408282088|gb|EKJ01436.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1862]
gi|408288474|gb|EKJ07297.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1864]
gi|408293101|gb|EKJ11565.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1865]
gi|408303336|gb|EKJ20798.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1868]
gi|408304519|gb|EKJ21944.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1866]
gi|408315855|gb|EKJ32154.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1869]
gi|408321307|gb|EKJ37346.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1870]
gi|408323034|gb|EKJ39003.1| ATP-dependent DNA helicase RecQ [Escherichia coli NE098]
gi|408334009|gb|EKJ48917.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK523]
gi|408341948|gb|EKJ56384.1| ATP-dependent DNA helicase RecQ [Escherichia coli 0.1304]
gi|408544804|gb|EKK22250.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5.2239]
gi|408545335|gb|EKK22771.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3.4870]
gi|408545856|gb|EKK23279.1| ATP-dependent DNA helicase RecQ [Escherichia coli 6.0172]
gi|408563231|gb|EKK39371.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.0566]
gi|408563445|gb|EKK39578.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.0586]
gi|408564373|gb|EKK40483.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.0569]
gi|408575663|gb|EKK51316.1| ATP-dependent DNA helicase RecQ [Escherichia coli 10.0833]
gi|408578574|gb|EKK54091.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.2524]
gi|408588317|gb|EKK62900.1| ATP-dependent DNA helicase RecQ [Escherichia coli 10.0869]
gi|408593310|gb|EKK67634.1| ATP-dependent DNA helicase RecQ [Escherichia coli 88.0221]
gi|408599002|gb|EKK72934.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.0416]
gi|408608686|gb|EKK82072.1| ATP-dependent DNA helicase RecQ [Escherichia coli 10.0821]
gi|421948409|gb|EKU05429.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CFSAN001629]
gi|421949627|gb|EKU06557.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CFSAN001630]
gi|427201317|gb|EKV71710.1| ATP-dependent DNA helicase RecQ [Escherichia coli 88.1042]
gi|427201385|gb|EKV71774.1| ATP-dependent DNA helicase RecQ [Escherichia coli 89.0511]
gi|427204734|gb|EKV75006.1| ATP-dependent DNA helicase RecQ [Escherichia coli 88.1467]
gi|427217586|gb|EKV86644.1| ATP-dependent DNA helicase RecQ [Escherichia coli 90.0091]
gi|427221262|gb|EKV90123.1| ATP-dependent DNA helicase RecQ [Escherichia coli 90.2281]
gi|427224265|gb|EKV92982.1| ATP-dependent DNA helicase RecQ [Escherichia coli 90.0039]
gi|427237737|gb|EKW05261.1| ATP-dependent DNA helicase RecQ [Escherichia coli 93.0056]
gi|427238116|gb|EKW05636.1| ATP-dependent DNA helicase RecQ [Escherichia coli 93.0055]
gi|427242488|gb|EKW09895.1| ATP-dependent DNA helicase RecQ [Escherichia coli 94.0618]
gi|427255805|gb|EKW22046.1| ATP-dependent DNA helicase RecQ [Escherichia coli 95.0183]
gi|427257425|gb|EKW23551.1| ATP-dependent DNA helicase RecQ [Escherichia coli 95.0943]
gi|427257996|gb|EKW24110.1| ATP-dependent DNA helicase RecQ [Escherichia coli 95.1288]
gi|427273047|gb|EKW37747.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0428]
gi|427274751|gb|EKW39394.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0427]
gi|427280527|gb|EKW44885.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0939]
gi|427289002|gb|EKW52599.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0932]
gi|427295793|gb|EKW58875.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0107]
gi|427297634|gb|EKW60664.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.0003]
gi|427307738|gb|EKW70166.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.1742]
gi|427310706|gb|EKW72942.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.0007]
gi|427315500|gb|EKW77496.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0672]
gi|427324990|gb|EKW86445.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0678]
gi|427326402|gb|EKW87820.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0713]
gi|429250725|gb|EKY35374.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0109]
gi|429251161|gb|EKY35784.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.0010]
gi|443424401|gb|AGC89305.1| ATP-dependent DNA helicase RecQ [Escherichia coli APEC O78]
gi|444534888|gb|ELV15066.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0814]
gi|444536334|gb|ELV16361.1| ATP-dependent DNA helicase RecQ [Escherichia coli 09BKT078844]
gi|444545204|gb|ELV24138.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0815]
gi|444554349|gb|ELV31919.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0816]
gi|444554556|gb|ELV32113.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0839]
gi|444559217|gb|ELV36456.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0848]
gi|444568882|gb|ELV45531.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1753]
gi|444572276|gb|ELV48715.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1775]
gi|444575846|gb|ELV52071.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1793]
gi|444587827|gb|ELV63229.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1805]
gi|444589282|gb|ELV64624.1| ATP-dependent DNA helicase RecQ [Escherichia coli ATCC 700728]
gi|444589460|gb|ELV64795.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA11]
gi|444603190|gb|ELV77901.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA19]
gi|444603275|gb|ELV77985.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA13]
gi|444612464|gb|ELV86757.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA2]
gi|444618782|gb|ELV92849.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA47]
gi|444620257|gb|ELV94266.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA48]
gi|444626765|gb|ELW00555.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA8]
gi|444635256|gb|ELW08688.1| ATP-dependent DNA helicase RecQ [Escherichia coli 7.1982]
gi|444637104|gb|ELW10480.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1781]
gi|444642183|gb|ELW15387.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1762]
gi|444651734|gb|ELW24530.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA35]
gi|444657008|gb|ELW29510.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3.4880]
gi|444666687|gb|ELW38747.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0670]
gi|449313574|gb|EMD03779.1| ATP-dependent DNA helicase RecQ [Escherichia coli O08]
gi|449314202|gb|EMD04376.1| ATP-dependent DNA helicase RecQ [Escherichia coli S17]
Length = 609
Score = 290 bits (743), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|433323990|ref|ZP_20401319.1| ATP-dependent DNA helicase RecQ [Escherichia coli J96]
gi|433327299|ref|ZP_20403746.1| ATP-dependent DNA helicase RecQ [Escherichia coli J96]
gi|432344992|gb|ELL39536.1| ATP-dependent DNA helicase RecQ [Escherichia coli J96]
gi|432347541|gb|ELL42000.1| ATP-dependent DNA helicase RecQ [Escherichia coli J96]
Length = 609
Score = 290 bits (743), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|15895945|ref|NP_349294.1| DNA helicase [Clostridium acetobutylicum ATCC 824]
gi|337737898|ref|YP_004637345.1| DNA helicase [Clostridium acetobutylicum DSM 1731]
gi|384459408|ref|YP_005671828.1| RecQ protein, superfamily II DNA helicase [Clostridium
acetobutylicum EA 2018]
gi|15025719|gb|AAK80634.1|AE007766_7 RecQ protein, superfamily II DNA helicase [Clostridium
acetobutylicum ATCC 824]
gi|325510097|gb|ADZ21733.1| RecQ protein, superfamily II DNA helicase [Clostridium
acetobutylicum EA 2018]
gi|336293149|gb|AEI34283.1| DNA helicase [Clostridium acetobutylicum DSM 1731]
Length = 714
Score = 290 bits (743), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 153/379 (40%), Positives = 228/379 (60%), Gaps = 12/379 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ + LKKYFGYS FR Q+++IQ I++ D +M TG GKS+CYQ+P L +V++
Sbjct: 5 IFNILKKYFGYSSFRRGQENIIQSILDGNDTFAIMPTGGGKSICYQVPALYMKGLTIVIT 64
Query: 61 PLISLMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L++ G+NA ++ S ++ + + A +G+ ++L++ PE+ +
Sbjct: 65 PLISLMKDQVDTLRENGVNASYINSTLSSKETNDILMSALSGHLKILYVAPER--LEQDY 122
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVA-LTATATEKVR 176
F + + + + A+DEAHC+S+WGHDFR+ YK++ P VA TATAT++V+
Sbjct: 123 FRNAIKDLTISMVAIDEAHCVSQWGHDFRVSYKRIVPFINIFDKRPIVAAFTATATDEVK 182
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DIIN L+LK P I FDR NLF+ I + ++ D + + + K +G I+Y
Sbjct: 183 KDIINLLELKEPNCFITGFDRDNLFFS---IVKNENKFDFITKYLSKHKELSG--IIYAA 237
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
T K+V+ + + L G G YH MG K R E+ LF+ DE ++M+AT AFGMGIDK +
Sbjct: 238 TRKEVDSLHQKLISQGYSVGKYHAGMGDKERSESQDLFLYDETKLMIATNAFGMGIDKSN 297
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY PK LESYYQE+GR GRDG S C + ++ + F +S R I
Sbjct: 298 VRFVIHYNMPKNLESYYQEAGRAGRDGEKSECIILFSGQDIQIQKFLIKQSIPSFDRQRI 357
Query: 357 -MESLLAAQRYCLLTTCRR 374
++ L YC+ T+C R
Sbjct: 358 ELKKLNDMINYCMTTSCLR 376
>gi|424818190|ref|ZP_18243341.1| ATP-dependent DNA helicase RecQ [Escherichia fergusonii ECD227]
gi|325499210|gb|EGC97069.1| ATP-dependent DNA helicase RecQ [Escherichia fergusonii ECD227]
Length = 609
Score = 290 bits (743), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIINTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENDVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|445053267|ref|ZP_21368273.1| ATP-dependent DNA helicase RecQ [Escherichia coli 95.0083]
gi|444659629|gb|ELW32037.1| ATP-dependent DNA helicase RecQ [Escherichia coli 95.0083]
Length = 603
Score = 290 bits (743), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 11 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 70
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 71 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 128
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 129 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 188
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 189 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 243
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 244 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 303
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 304 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 362
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 363 NAMGAFAEAQTCRR 376
>gi|417714622|ref|ZP_12363574.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-272]
gi|417719543|ref|ZP_12368424.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-227]
gi|332998230|gb|EGK17832.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-272]
gi|333013771|gb|EGK33134.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-227]
Length = 609
Score = 290 bits (743), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKQQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|37927351|pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 290 bits (743), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|423402487|ref|ZP_17379660.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG2X1-2]
gi|423476816|ref|ZP_17453531.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG6X1-1]
gi|401650759|gb|EJS68328.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG2X1-2]
gi|402433123|gb|EJV65178.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG6X1-1]
Length = 705
Score = 290 bits (743), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 153/372 (41%), Positives = 225/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRIVDYLPEKPLVLALTATATPQVREDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N+L + + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 NTLGINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLMKAGVSVSKYHAGMSDNDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSACILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHSEQC 373
>gi|78187521|ref|YP_375564.1| ATP-requiring DNA helicase RecQ [Chlorobium luteolum DSM 273]
gi|78167423|gb|ABB24521.1| ATP-dependent DNA helicase RecQ [Chlorobium luteolum DSM 273]
Length = 615
Score = 290 bits (743), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 153/374 (40%), Positives = 218/374 (58%), Gaps = 10/374 (2%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FG+ FRP Q++V++ I+E RD VM TG GKSLCYQLP ++ T +VVSPLI
Sbjct: 13 ALQRVFGFQAFRPNQREVVRAILEGRDVFAVMPTGGGKSLCYQLPAVLLPGTCIVVSPLI 72
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKA---ETGYFQLLFMTPEKACIIPISFWS 120
+LM+DQV + GI A FL S+Q Q A ++G +LL++ PE+ + SF +
Sbjct: 73 ALMKDQVDGARANGIRAAFLNSSQLPEERQMVANALQSGELELLYVAPERFAVD--SFRA 130
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L + + +DEAHCISEWGHDFR +Y L L P A TATATE+V+ D +
Sbjct: 131 MLRGIRISMAVIDEAHCISEWGHDFRPDYLSLSALVDLAGMAPVAAFTATATERVQADTL 190
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L++P++ ASFDR NL Y V + D + IL+ +G II Y + K
Sbjct: 191 LRLALRDPFLVRASFDRPNLSYEVLF----KDSADRQILSILRRFSGKAGII-YRASRKS 245
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V + + L+ G +A YH + + RE+ FIRDE+ V++AT+AFGMGIDK ++R V
Sbjct: 246 VNDTAAMLRAKGFRALPYHAGLDDREREQNQNAFIRDEVDVIIATVAFGMGIDKSNIRFV 305
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IH PK++E+YYQE+GR GRDG + C L Y++ + AK F+ +R + +L
Sbjct: 306 IHADLPKSIENYYQETGRAGRDGEPAHCTLLYSQGDIAKVRFFIDAMADGEERARALFAL 365
Query: 361 LAAQRYCLLTTCRR 374
+ CRR
Sbjct: 366 STVSAFAASAVCRR 379
>gi|290513154|ref|ZP_06552516.1| ATP-dependent DNA helicase RecQ [Klebsiella sp. 1_1_55]
gi|289774365|gb|EFD82371.1| ATP-dependent DNA helicase RecQ [Klebsiella sp. 1_1_55]
Length = 618
Score = 290 bits (743), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 145/338 (42%), Positives = 213/338 (63%), Gaps = 10/338 (2%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+ +I+ ++E RDCLVVM TG GKSLCYQ+P LV G +VVSPLI
Sbjct: 26 VLQETFGYQQFRPGQETIIETVLEGRDCLVVMPTGGGKSLCYQVPALVMGGLTVVVSPLI 85
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q+ V +G +LL++ PE+ ++ +F
Sbjct: 86 SLMKDQVDQLLANGVAAACLNSTQSREQQQEVMAGCRSGQVRLLYIAPER--LMLDNFLE 143
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L + + AVDEAHCIS+WGHDFR EY L +LR L +PF+ALTATA + R DI+
Sbjct: 144 HLANWNLAMLAVDEAHCISQWGHDFRPEYAALGQLRQRLPQIPFMALTATADDTTRRDIV 203
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + ++SFDR N+ Y ++ +D+L++ + +G I+YC +
Sbjct: 204 RLLGLNDPLIQVSSFDRPNIRY---MLMEKFKPLDQLMRYVQDQRGKSG--IIYCNSRSK 258
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 259 VEDTAARLQSRGISAAAYHAGLENAVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 318
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A
Sbjct: 319 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 356
>gi|423662335|ref|ZP_17637504.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VDM022]
gi|401297954|gb|EJS03559.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VDM022]
Length = 705
Score = 290 bits (743), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 225/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVREDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N+L + + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 NTLGINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIHQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDEI VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLGKAGVSVSKYHAGMSDHDRNEQQELFLRDEISVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSECILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|417626000|ref|ZP_12276288.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_H.1.8]
gi|345372046|gb|EGX04013.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_H.1.8]
Length = 609
Score = 290 bits (743), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 224/374 (59%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIHLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|432619136|ref|ZP_19855233.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE75]
gi|431150651|gb|ELE51701.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE75]
Length = 604
Score = 290 bits (743), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 12 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 71
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 72 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 129
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 130 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 189
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 190 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 244
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 245 EDTAARLQSKGISAAAYHAGLENDVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 304
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 305 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 363
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 364 NAMGAFAEAQTCRR 377
>gi|422381292|ref|ZP_16461460.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 57-2]
gi|324007518|gb|EGB76737.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 57-2]
Length = 611
Score = 290 bits (743), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 224/374 (59%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQISLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|419863367|ref|ZP_14385906.1| ATP-dependent DNA helicase RecQ [Escherichia coli O103:H25 str.
CVM9340]
gi|388342947|gb|EIL08948.1| ATP-dependent DNA helicase RecQ [Escherichia coli O103:H25 str.
CVM9340]
Length = 609
Score = 290 bits (743), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTVCRTGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|423510797|ref|ZP_17487328.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuA2-1]
gi|402453750|gb|EJV85550.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuA2-1]
Length = 705
Score = 290 bits (743), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 225/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVREDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N+L + + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 NTLGINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDEI VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLGKAGVSVSKYHAGMSDHDRNEQQELFLRDEISVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSECILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|191174273|ref|ZP_03035782.1| ATP-dependent DNA helicase RecQ [Escherichia coli F11]
gi|300979425|ref|ZP_07174554.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 200-1]
gi|331660168|ref|ZP_08361104.1| ATP-dependent DNA helicase RecQ [Escherichia coli TA206]
gi|386621651|ref|YP_006141231.1| ATP-dependent DNA helicase [Escherichia coli NA114]
gi|387831714|ref|YP_003351651.1| DNA helicase RecQ [Escherichia coli SE15]
gi|417285103|ref|ZP_12072394.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW07793]
gi|419912569|ref|ZP_14431019.1| ATP-dependent DNA helicase RecQ [Escherichia coli KD1]
gi|422371441|ref|ZP_16451821.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 16-3]
gi|422373962|ref|ZP_16454257.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 60-1]
gi|432424226|ref|ZP_19666762.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE178]
gi|432468160|ref|ZP_19710236.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE205]
gi|432473175|ref|ZP_19715210.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE206]
gi|432502379|ref|ZP_19744127.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE216]
gi|432561089|ref|ZP_19797741.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE49]
gi|432585350|ref|ZP_19821740.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE57]
gi|432696687|ref|ZP_19931877.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE162]
gi|432708217|ref|ZP_19943291.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE6]
gi|432715681|ref|ZP_19950704.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE8]
gi|432734575|ref|ZP_19969396.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE45]
gi|432761660|ref|ZP_19996147.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE46]
gi|432891418|ref|ZP_20104136.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE165]
gi|432901413|ref|ZP_20111499.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE192]
gi|432923092|ref|ZP_20125798.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE173]
gi|432929782|ref|ZP_20130734.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE175]
gi|432983329|ref|ZP_20172095.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE211]
gi|433030772|ref|ZP_20218615.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE109]
gi|433075106|ref|ZP_20261740.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE129]
gi|433080034|ref|ZP_20266548.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE131]
gi|433098652|ref|ZP_20284816.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE139]
gi|433108083|ref|ZP_20294040.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE148]
gi|433122440|ref|ZP_20308093.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE157]
gi|433185565|ref|ZP_20369797.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE85]
gi|190905456|gb|EDV65086.1| ATP-dependent DNA helicase RecQ [Escherichia coli F11]
gi|281180871|dbj|BAI57201.1| DNA helicase RecQ [Escherichia coli SE15]
gi|300308016|gb|EFJ62536.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 200-1]
gi|315296805|gb|EFU56097.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 16-3]
gi|324014666|gb|EGB83885.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 60-1]
gi|331052736|gb|EGI24771.1| ATP-dependent DNA helicase RecQ [Escherichia coli TA206]
gi|333972152|gb|AEG38957.1| ATP-dependent DNA helicase [Escherichia coli NA114]
gi|386250344|gb|EII96511.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW07793]
gi|388391428|gb|EIL52895.1| ATP-dependent DNA helicase RecQ [Escherichia coli KD1]
gi|430941449|gb|ELC61596.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE178]
gi|430990518|gb|ELD06948.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE205]
gi|430995341|gb|ELD11638.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE206]
gi|431025701|gb|ELD38799.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE216]
gi|431088285|gb|ELD94181.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE49]
gi|431114336|gb|ELE17880.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE57]
gi|431230687|gb|ELF26462.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE162]
gi|431251083|gb|ELF45101.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE8]
gi|431254661|gb|ELF47929.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE6]
gi|431270562|gb|ELF61725.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE45]
gi|431305336|gb|ELF93665.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE46]
gi|431422057|gb|ELH04252.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE192]
gi|431429823|gb|ELH11658.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE165]
gi|431434505|gb|ELH16154.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE173]
gi|431439929|gb|ELH21260.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE175]
gi|431487979|gb|ELH67620.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE211]
gi|431539939|gb|ELI15573.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE109]
gi|431582631|gb|ELI54644.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE129]
gi|431592999|gb|ELI63564.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE131]
gi|431611967|gb|ELI81226.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE139]
gi|431623503|gb|ELI92172.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE148]
gi|431638407|gb|ELJ06442.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE157]
gi|431701482|gb|ELJ66398.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE85]
Length = 611
Score = 290 bits (743), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 224/374 (59%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQISLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|423517540|ref|ZP_17494021.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuA2-4]
gi|401163812|gb|EJQ71157.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuA2-4]
Length = 705
Score = 290 bits (743), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 225/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVREDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N+L + + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 NTLGINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDEI VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLGKAGVSVSKYHAGMSDHDRNEQQELFLRDEISVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSECILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|331685543|ref|ZP_08386127.1| ATP-dependent DNA helicase RecQ [Escherichia coli H299]
gi|331077244|gb|EGI48458.1| ATP-dependent DNA helicase RecQ [Escherichia coli H299]
Length = 611
Score = 290 bits (743), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSKGISAAAYHAGLENDVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|432804057|ref|ZP_20038006.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE84]
gi|431345148|gb|ELG32075.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE84]
Length = 611
Score = 290 bits (742), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 224/374 (59%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQQLDVMTGCRTGQISLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|229012075|ref|ZP_04169254.1| ATP-dependent DNA helicase RecQ [Bacillus mycoides DSM 2048]
gi|229133703|ref|ZP_04262529.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BDRD-ST196]
gi|229167360|ref|ZP_04295098.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH621]
gi|423487941|ref|ZP_17464623.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BtB2-4]
gi|423493663|ref|ZP_17470307.1| ATP-dependent DNA helicase RecQ [Bacillus cereus CER057]
gi|423499545|ref|ZP_17476162.1| ATP-dependent DNA helicase RecQ [Bacillus cereus CER074]
gi|423599875|ref|ZP_17575875.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD078]
gi|228615922|gb|EEK73009.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH621]
gi|228649738|gb|EEL05747.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BDRD-ST196]
gi|228749163|gb|EEL99009.1| ATP-dependent DNA helicase RecQ [Bacillus mycoides DSM 2048]
gi|401153334|gb|EJQ60761.1| ATP-dependent DNA helicase RecQ [Bacillus cereus CER057]
gi|401156803|gb|EJQ64205.1| ATP-dependent DNA helicase RecQ [Bacillus cereus CER074]
gi|401234562|gb|EJR41040.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD078]
gi|402436006|gb|EJV68039.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BtB2-4]
Length = 705
Score = 290 bits (742), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 225/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVREDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N+L + + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 NTLGINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDEI VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLGKAGVSVSKYHAGMSDHDRNEQQELFLRDEISVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSECILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|262040869|ref|ZP_06014095.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259041758|gb|EEW42803.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 608
Score = 290 bits (742), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 145/337 (43%), Positives = 213/337 (63%), Gaps = 10/337 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+ +I+ +E RDCLVVM TG GKSLCYQ+P LV G +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQETIIETALEGRDCLVVMPTGGGKSLCYQVPALVMGGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQ---TKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S Q+ +Q +G +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLLANGVAAACLNSTQSREQLQEVMAGCRSGQVRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +LR + +PF+ALTATA + R DI+
Sbjct: 135 LANWNLAMLAVDEAHCISQWGHDFRPEYAALGQLRQRMPQIPFMALTATADDTTRRDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + ++SFDR N+ Y ++ +D+L++ + +G I+YC + V
Sbjct: 195 LLGLNDPLIQVSSFDRPNIRY---MLMEKFKPLDQLMRYVQDQRGKSG--IIYCNSRSKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R E F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSRGISAAAYHAGLENDVRAEVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346
>gi|417142416|ref|ZP_11984991.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.0259]
gi|417310399|ref|ZP_12097213.1| ATP-dependent DNA helicase recQ [Escherichia coli PCN033]
gi|338768042|gb|EGP22848.1| ATP-dependent DNA helicase recQ [Escherichia coli PCN033]
gi|386155440|gb|EIH11795.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.0259]
Length = 611
Score = 290 bits (742), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSKGISAAAYHAGLENNIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|432604655|ref|ZP_19840881.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE66]
gi|431136589|gb|ELE38447.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE66]
Length = 611
Score = 290 bits (742), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSKGISAAAYHAGLENNIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|15603292|ref|NP_246366.1| RecQ protein [Pasteurella multocida subsp. multocida str. Pm70]
gi|18202817|sp|Q9CL21.1|RECQ_PASMU RecName: Full=ATP-dependent DNA helicase RecQ
gi|12721804|gb|AAK03511.1| RecQ [Pasteurella multocida subsp. multocida str. Pm70]
Length = 632
Score = 290 bits (742), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 157/376 (41%), Positives = 227/376 (60%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L FGY FR Q++VI + +D LV+MATG+GKSLCYQ+P L LV+SP
Sbjct: 27 LDVLHAVFGYQSFRKGQEEVIDATLMGKDSLVIMATGNGKSLCYQIPALCFEGLTLVISP 86
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L GI A++L S+QT VQ K +G +LL+++PEK ++ SF
Sbjct: 87 LISLMKDQVDQLLANGIEADYLNSSQTFTEQQQVQNKLMSGTLKLLYVSPEK--VMTTSF 144
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + V A+DEAHCIS+WGHDFR EY QL L++ P +ALTATA R D
Sbjct: 145 FHLISHCKVSFVAIDEAHCISQWGHDFRPEYTQLGGLKSCFPHAPIMALTATADHATRQD 204
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L L++P+V I SFDR N+ Y ++ + + +++L + +L +G I+YC +
Sbjct: 205 ILRHLNLQSPHVYIGSFDRPNIRY--TLVEKFKP-MEQLCRFVLGQKGKSG--IIYCNSR 259
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I+++L+ GV A YH + + RE+ R F RD ++V+VAT+AFGMGI+K +VR
Sbjct: 260 SKVERIAESLRNKGVSAQAYHAGLETSQREQVQRAFQRDNVQVVVATIAFGMGINKSNVR 319
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+H+ P+++ESYYQE+GR GRD + + L+Y +++A E QR
Sbjct: 320 FVVHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLHKILLEKPESPQRQIEAL 379
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 380 KLQAIGEFAESQTCRR 395
>gi|422977416|ref|ZP_16977368.1| ATP-dependent DNA helicase recQ [Escherichia coli TA124]
gi|371593264|gb|EHN82147.1| ATP-dependent DNA helicase recQ [Escherichia coli TA124]
Length = 611
Score = 290 bits (742), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQQLDVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSKGISAAAYHAGLENNIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|417854228|ref|ZP_12499548.1| RecQ [Pasteurella multocida subsp. multocida str. Anand1_goat]
gi|338218289|gb|EGP04066.1| RecQ [Pasteurella multocida subsp. multocida str. Anand1_goat]
Length = 632
Score = 290 bits (742), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 157/376 (41%), Positives = 227/376 (60%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L FGY FR Q++VI + +D LV+MATG+GKSLCYQ+P L LV+SP
Sbjct: 27 LDVLHAVFGYQSFRKGQEEVIDATLMGKDSLVIMATGNGKSLCYQIPALCFEGLTLVISP 86
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L GI A++L S+QT VQ K +G +LL+++PEK ++ SF
Sbjct: 87 LISLMKDQVDQLLANGIEADYLNSSQTFTEQQQVQNKLMSGTLKLLYVSPEK--VMTTSF 144
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + V A+DEAHCIS+WGHDFR EY QL L++ P +ALTATA R D
Sbjct: 145 FHLISHCKVSFVAIDEAHCISQWGHDFRPEYTQLGGLKSCFPHAPIMALTATADHATRQD 204
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L L++P+V I SFDR N+ Y ++ + + +++L + +L +G I+YC +
Sbjct: 205 ILRHLNLQSPHVYIGSFDRPNIRY--TLVEKFKP-MEQLCRFVLGQKGKSG--IIYCNSR 259
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I+++L+ GV A YH + + RE+ R F RD ++V+VAT+AFGMGI+K +VR
Sbjct: 260 SKVERIAESLRNKGVSAQAYHAGLETAQREQVQRAFQRDNVQVVVATIAFGMGINKSNVR 319
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+H+ P+++ESYYQE+GR GRD + + L+Y +++A E QR
Sbjct: 320 FVVHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLHKILLEKPESPQRQIEAL 379
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 380 KLQAIGEFAESQTCRR 395
>gi|218550953|ref|YP_002384744.1| ATP-dependent DNA helicase RecQ [Escherichia fergusonii ATCC 35469]
gi|416900390|ref|ZP_11929665.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_7v]
gi|417117601|ref|ZP_11968462.1| ATP-dependent DNA helicase RecQ [Escherichia coli 1.2741]
gi|422803414|ref|ZP_16851902.1| ATP-dependent DNA helicase RecQ [Escherichia coli M863]
gi|422808185|ref|ZP_16856611.1| ATP-dependent DNA helicase RecQ [Escherichia fergusonii B253]
gi|450195654|ref|ZP_21892608.1| ATP-dependent DNA helicase RecQ [Escherichia coli SEPT362]
gi|218358494|emb|CAQ91141.1| ATP-dependent DNA helicase [Escherichia fergusonii ATCC 35469]
gi|323964066|gb|EGB59556.1| ATP-dependent DNA helicase RecQ [Escherichia coli M863]
gi|324111045|gb|EGC05032.1| ATP-dependent DNA helicase RecQ [Escherichia fergusonii B253]
gi|327250673|gb|EGE62379.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_7v]
gi|386140145|gb|EIG81300.1| ATP-dependent DNA helicase RecQ [Escherichia coli 1.2741]
gi|449316195|gb|EMD06316.1| ATP-dependent DNA helicase RecQ [Escherichia coli SEPT362]
Length = 609
Score = 290 bits (742), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENDVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|432399769|ref|ZP_19642542.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE25]
gi|432408892|ref|ZP_19651593.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE28]
gi|432725287|ref|ZP_19960200.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE17]
gi|432729896|ref|ZP_19964768.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE18]
gi|432743585|ref|ZP_19978298.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE23]
gi|432988316|ref|ZP_20176995.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE217]
gi|433113097|ref|ZP_20298944.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE150]
gi|430912931|gb|ELC34103.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE25]
gi|430925933|gb|ELC46529.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE28]
gi|431262506|gb|ELF54496.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE17]
gi|431270666|gb|ELF61828.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE18]
gi|431280876|gb|ELF71785.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE23]
gi|431502029|gb|ELH80922.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE217]
gi|431624586|gb|ELI93202.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE150]
Length = 604
Score = 290 bits (742), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 12 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 71
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 72 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGEIRLLYIAPER--LMLDNFLEH 129
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 130 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPMLPFMALTATADDTTRQDIVR 189
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 190 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 244
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 245 EDTAARLQSRGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 304
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 305 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 363
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 364 NAMGAFAEAQTCRR 377
>gi|423396692|ref|ZP_17373893.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG2X1-1]
gi|401651268|gb|EJS68833.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG2X1-1]
Length = 705
Score = 290 bits (742), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 152/372 (40%), Positives = 226/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLIQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N+L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 NTLEINQENTIMTTFERENLSFSVV---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDE+ VM+AT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLGRAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMIATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSECILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|119470517|ref|ZP_01613220.1| ATP-dependent DNA helicase [Alteromonadales bacterium TW-7]
gi|119446218|gb|EAW27495.1| ATP-dependent DNA helicase [Alteromonadales bacterium TW-7]
Length = 607
Score = 290 bits (742), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 148/375 (39%), Positives = 229/375 (61%), Gaps = 10/375 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ LK+ FGYS FR QK VI + +D LV++ TG GKS+CYQ+P LV +V+SPL
Sbjct: 17 TVLKQVFGYSEFRDGQKAVIDAALNAQDTLVLLPTGGGKSVCYQIPALVLEGVTIVISPL 76
Query: 63 ISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLMQDQV L+ G+ A ++ ++ + V + G +LL++ PEK ++ F
Sbjct: 77 ISLMQDQVAQLQALGVKAAYVNNSLAREEQQRVYQQLHQGLIKLLYVAPEK--VLQRDFL 134
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L + LFA+DEAHC+S WGHDFR Y +L++L+ VP +ALTATA + R DI
Sbjct: 135 ERLSHLKISLFAIDEAHCVSHWGHDFRPHYFRLNELKQRFAHVPMMALTATADKATRFDI 194
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+ LKL+ PY+ SFDR N+ Y ++ + + V +L++ + + +G I+YC + K
Sbjct: 195 VEQLKLQQPYIHTGSFDRPNIRYTIE--EKFKPMV-QLLRYLKEQKNQSG--IIYCTSRK 249
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V++I++ L G+ A YH M ++ R+ F RD+I+++VAT+AFGMGI+KP+VR
Sbjct: 250 RVDDIAEKLADAGLNAAAYHAGMSNEQRQFVQTGFARDDIQIVVATVAFGMGINKPNVRF 309
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V+HY PK++E+YYQE+GR GRDG+A+ +Y+ ++ + + + E +R +
Sbjct: 310 VLHYDIPKSIEAYYQETGRAGRDGLAAEAIMYFDPADIGRVRRFFEDIDDEQRRRVEEQR 369
Query: 360 LLAAQRYCLLTTCRR 374
A + TCRR
Sbjct: 370 FNAMASFAEAQTCRR 384
>gi|417202238|ref|ZP_12018488.1| ATP-dependent DNA helicase RecQ [Escherichia coli 4.0522]
gi|417217784|ref|ZP_12023658.1| ATP-dependent DNA helicase RecQ [Escherichia coli JB1-95]
gi|386187125|gb|EIH75948.1| ATP-dependent DNA helicase RecQ [Escherichia coli 4.0522]
gi|386193223|gb|EIH87519.1| ATP-dependent DNA helicase RecQ [Escherichia coli JB1-95]
Length = 611
Score = 290 bits (742), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQVNGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|359449260|ref|ZP_09238757.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20480]
gi|392537893|ref|ZP_10285030.1| ATP-dependent DNA helicase [Pseudoalteromonas marina mano4]
gi|358044909|dbj|GAA75006.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20480]
Length = 607
Score = 290 bits (742), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 148/375 (39%), Positives = 229/375 (61%), Gaps = 10/375 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ LK+ FGYS FR QK VI + +D LV++ TG GKS+CYQ+P LV +V+SPL
Sbjct: 17 TVLKQVFGYSEFRDGQKAVIDAALNAQDTLVLLPTGGGKSVCYQIPALVLEGVTIVISPL 76
Query: 63 ISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLMQDQV L+ G+ A ++ ++ + V + G +LL++ PEK ++ F
Sbjct: 77 ISLMQDQVAQLQALGVKAAYVNNSLAREEQQRVYQQLHQGLIKLLYVAPEK--VLQRDFL 134
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L + LFA+DEAHC+S WGHDFR Y +L++L+ VP +ALTATA + R DI
Sbjct: 135 ERLSHLKISLFAIDEAHCVSHWGHDFRPHYFRLNELKQRFAHVPMMALTATADKATRFDI 194
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+ LKL+ PY+ SFDR N+ Y ++ + + V +L++ + + +G I+YC + K
Sbjct: 195 VEQLKLQQPYIHTGSFDRPNIRYTIE--EKFKPMV-QLLRYLKEQKNQSG--IIYCTSRK 249
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V++I++ L G+ A YH M ++ R+ F RD+I+++VAT+AFGMGI+KP+VR
Sbjct: 250 RVDDIAEKLADAGLNAAAYHAGMSNEQRQFVQTGFARDDIQIVVATVAFGMGINKPNVRF 309
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V+HY PK++E+YYQE+GR GRDG+A+ +Y+ ++ + + + E +R +
Sbjct: 310 VLHYDIPKSIEAYYQETGRAGRDGLAAEAIMYFDPADIGRVRRFFEDIDDEQRRRVEEQR 369
Query: 360 LLAAQRYCLLTTCRR 374
A + TCRR
Sbjct: 370 FNAMASFAEAQTCRR 384
>gi|229161685|ref|ZP_04289665.1| ATP-dependent DNA helicase RecQ [Bacillus cereus R309803]
gi|228621930|gb|EEK78776.1| ATP-dependent DNA helicase RecQ [Bacillus cereus R309803]
Length = 705
Score = 290 bits (742), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 153/372 (41%), Positives = 225/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LATYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVREDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N+L + + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 NTLGINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLMKAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSACILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|387770728|ref|ZP_10126905.1| ATP-dependent DNA helicase RecQ [Pasteurella bettyae CCUG 2042]
gi|386903739|gb|EIJ68543.1| ATP-dependent DNA helicase RecQ [Pasteurella bettyae CCUG 2042]
Length = 630
Score = 290 bits (742), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 159/376 (42%), Positives = 226/376 (60%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L+ FGY FR Q++VI+ + RD LVVMATG+GKSLCYQ+P L LV+SP
Sbjct: 23 LEVLRSVFGYQSFRKGQEEVIEAALTGRDSLVVMATGNGKSLCYQIPALCFEGLTLVISP 82
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L GI+A+FL S Q+ VQ KA +G +LL+++PEK ++ SF
Sbjct: 83 LISLMKDQVDQLLTNGISADFLNSTQSFEQQQKVQNKAISGELKLLYLSPEK--VMTNSF 140
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + V A+DEAHCIS+WGHDFR EY QL L++ P +ALTATA R D
Sbjct: 141 FQFISLCNVSFIAIDEAHCISQWGHDFRPEYTQLGGLKSCFPNAPVMALTATADRTTRQD 200
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ +L L P++ + SFDR N+ Y ++ + + +D+L ++ +G IVYC +
Sbjct: 201 ILQNLHLNEPHLYVGSFDRPNIRY--TLVEKFKP-MDQLCNFVVAQKGKSG--IVYCNSR 255
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I++ALK+ GV A YH M + R+ + F RD I+V+VAT+AFGMGI+K +VR
Sbjct: 256 SKVERIAEALKKKGVSAAGYHAGMEPQQRDAVQQAFQRDNIQVVVATIAFGMGINKSNVR 315
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V H+ +++E+YYQE+GR GRD + + L+Y +++A E QR
Sbjct: 316 FVAHFDLSRSIEAYYQETGRAGRDDLPAEAVLFYEPADYAWLHKMLLEEPEGPQREIKQH 375
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 376 KLEAIGEFAESQTCRR 391
>gi|417280748|ref|ZP_12068048.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3003]
gi|386245077|gb|EII86807.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3003]
Length = 611
Score = 290 bits (742), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWDPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|404377215|ref|ZP_10982353.1| ATP-dependent DNA helicase recQ [Escherichia sp. 1_1_43]
gi|422769226|ref|ZP_16822947.1| ATP-dependent DNA helicase RecQ [Escherichia coli E1520]
gi|226838725|gb|EEH70753.1| ATP-dependent DNA helicase recQ [Escherichia sp. 1_1_43]
gi|323934125|gb|EGB30560.1| ATP-dependent DNA helicase RecQ [Escherichia coli E1520]
Length = 611
Score = 290 bits (742), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 224/374 (59%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKPG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|328873248|gb|EGG21615.1| ATP-dependent DNA helicase RecQ family protein [Dictyostelium
fasciculatum]
Length = 926
Score = 290 bits (742), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 151/356 (42%), Positives = 229/356 (64%), Gaps = 12/356 (3%)
Query: 3 STLKKYFGYSVFRPYQKDVI-QRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
S LKKYFG++ FR Q D++ Q + + D V ATG+GKSLC+QLPP+V KTALV+SP
Sbjct: 110 SVLKKYFGFNSFRGSQYDIVYQSCVYQSDIYVSAATGAGKSLCFQLPPIVLRKTALVISP 169
Query: 62 LISLMQDQVMSLKQRGINA-EFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
LIS+M DQVM L Q GI A ++ + K GY+ ++FM+PEKA + +
Sbjct: 170 LISIMHDQVMKLTQMGIRACQWSPQCRIGDPTHQKLVGGYYSVVFMSPEKA-MTSLEIIQ 228
Query: 121 KLLKAG-VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L + +C+ A+DE HC+S+WGHDFR +Y L R VP +ALTAT+T ++ ++
Sbjct: 229 ELCETDTLCMVAIDECHCLSQWGHDFRPDYVNLSIFRDMFPNVPIMALTATSTPEIEREV 288
Query: 180 INSLKLKNPYVTIASFDRKNLFYGV--KVINRGQSFVD-ELVQEIL-----KSVAGAGSI 231
I+SLK++ P+++ AS +R N+FY + K G+ D +++ +I+ K + S
Sbjct: 289 ISSLKMRKPFISHASRNRPNIFYQIIQKTKGTGRKEKDWDVITKIIHTMQEKRPNQSNST 348
Query: 232 IVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMG 291
I+YC TI++ E++ LK ++ Y+ ++ + R+ HR F+ + I V+VAT+AFGMG
Sbjct: 349 IIYCPTIEESVELNYFLKTKQIRTVCYNSKVSMEQRKTIHRDFLYNNIDVVVATIAFGMG 408
Query: 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGES 347
IDKPD+R +IHYG K++E YYQESGR GRDG+ S+ +++R +F KGD+ +S
Sbjct: 409 IDKPDIRLIIHYGPSKSIEEYYQESGRGGRDGLPSLSITFFSRQDFIKGDYRITKS 464
>gi|170680861|ref|YP_001746140.1| ATP-dependent DNA helicase RecQ [Escherichia coli SMS-3-5]
gi|170518579|gb|ACB16757.1| ATP-dependent DNA helicase RecQ [Escherichia coli SMS-3-5]
Length = 611
Score = 290 bits (742), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAVCLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|300904077|ref|ZP_07121957.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 84-1]
gi|301303719|ref|ZP_07209840.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 124-1]
gi|415865367|ref|ZP_11538229.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 85-1]
gi|300403957|gb|EFJ87495.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 84-1]
gi|300841019|gb|EFK68779.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 124-1]
gi|315254188|gb|EFU34156.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 85-1]
Length = 611
Score = 290 bits (742), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAILFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|417843805|ref|ZP_12489870.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M21127]
gi|341948268|gb|EGT74898.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M21127]
Length = 619
Score = 290 bits (742), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 160/376 (42%), Positives = 224/376 (59%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+S LK FGY FR Q++VI + +D LVVMATG+GKSLCYQ+P L LV+SP
Sbjct: 17 LSVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFAGLTLVISP 76
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ GI+A+FL S+QT VQ K +G +LL+++PEK ++ SF
Sbjct: 77 LISLMKDQVDQLQANGIDADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEK--VMTNSF 134
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + + V A+DEAHCIS+WGHDFR EY QL L+ P +ALTATA R D
Sbjct: 135 FQLISYSKVSFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPHAPIMALTATADYATRQD 194
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L L+NP+ I SFDR N+ Y + +++L + +L +G I+YC +
Sbjct: 195 ILTHLNLENPHKYIGSFDRPNIRY---TLEEKYKPMEQLTRFVLAQKGKSG--IIYCNSR 249
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I+++L+ GV A YH M + RE + F RD ++V+VAT+AFGMGI+K +VR
Sbjct: 250 NKVERIAESLRNKGVSAAAYHAGMETALRERVQQDFQRDNVQVVVATIAFGMGINKSNVR 309
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V H+ +++ESYYQE+GR GRD + + L+Y +++A E QR
Sbjct: 310 FVAHFDLSRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLEKPETPQRQIEQH 369
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 370 KLEAIGEFAESQTCRR 385
>gi|218556387|ref|YP_002389301.1| ATP-dependent DNA helicase RecQ [Escherichia coli IAI1]
gi|218363156|emb|CAR00797.1| ATP-dependent DNA helicase [Escherichia coli IAI1]
Length = 609
Score = 290 bits (742), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQTCEQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|392399436|ref|YP_006436037.1| ATP-dependent DNA helicase RecQ [Flexibacter litoralis DSM 6794]
gi|390530514|gb|AFM06244.1| ATP-dependent DNA helicase RecQ [Flexibacter litoralis DSM 6794]
Length = 729
Score = 290 bits (742), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 159/377 (42%), Positives = 231/377 (61%), Gaps = 17/377 (4%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
TLK+ FGY+ FR Q+ +IQ +++ ++ V+M TG+GKSLCYQLP +V TA+V+SPLI
Sbjct: 11 TLKEVFGYNQFRGNQETIIQNLLDGKNTFVIMPTGAGKSLCYQLPAIVREGTAIVISPLI 70
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFWS 120
+LM++QV L GINA FL S + S V+ G +LL++ PE +
Sbjct: 71 ALMKNQVDQLNAVGINASFLNSTLSKSESNKVKKSVLAGNTKLLYVAPE--SLTKPENLD 128
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L KA + A+DEAHCISEWGHDFR EY+++ + L +P +ALTATAT KV+ DI
Sbjct: 129 FLAKANLSFIAIDEAHCISEWGHDFRPEYRRIRFIVDSLGDLPIIALTATATPKVQQDIQ 188
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
+L +++ V SF+R+NL+Y V R ++ V + + + LK G II YC++ K
Sbjct: 189 KNLHMEDANVFKTSFNRQNLYYEV----RPKTNVKKQLIKYLKGKKGQSGII-YCLSRKK 243
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VEEI + LK +K+ YH + S R + F+ +E+ ++VAT+AFGMGIDKPDVR V
Sbjct: 244 VEEIHEFLKVNDIKSRPYHAGLDSSIRMQNQDAFLNEEVDIIVATIAFGMGIDKPDVRCV 303
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGE---SQTENQRTAIM 357
IHY PK+LE YYQE+GR GRDG+ + C ++Y+ + K + + + ++ +N R +
Sbjct: 304 IHYDAPKSLEGYYQETGRAGRDGLNADCIMFYSPEDIHKLEKFNKDKPVTERDNARYLLQ 363
Query: 358 ESLLAAQRYCLLTTCRR 374
E Y CRR
Sbjct: 364 E----MADYATSGVCRR 376
>gi|229060489|ref|ZP_04197852.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH603]
gi|228718872|gb|EEL70493.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH603]
Length = 705
Score = 290 bits (742), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 225/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVREDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N+L + + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 NTLGINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDEI VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLGKAGVSVSKYHAGMSDHDRNEQQELFLRDEISVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSECILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|157157237|ref|YP_001465308.1| ATP-dependent DNA helicase RecQ [Escherichia coli E24377A]
gi|157079267|gb|ABV18975.1| ATP-dependent DNA helicase RecQ [Escherichia coli E24377A]
Length = 609
Score = 290 bits (742), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 224/374 (59%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQINSFDRPNIRY---MLMEKFKPLDQLMRYVQEQCGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|415838403|ref|ZP_11520381.1| ATP-dependent DNA helicase RecQ [Escherichia coli RN587/1]
gi|425280271|ref|ZP_18671483.1| ATP-dependent DNA helicase RecQ [Escherichia coli ARS4.2123]
gi|425302722|ref|ZP_18692600.1| ATP-dependent DNA helicase RecQ [Escherichia coli 07798]
gi|323189754|gb|EFZ75033.1| ATP-dependent DNA helicase RecQ [Escherichia coli RN587/1]
gi|408197343|gb|EKI22606.1| ATP-dependent DNA helicase RecQ [Escherichia coli ARS4.2123]
gi|408210381|gb|EKI34946.1| ATP-dependent DNA helicase RecQ [Escherichia coli 07798]
Length = 609
Score = 290 bits (742), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWDPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|387614520|ref|YP_006117636.1| ATP-dependent DNA helicase [Escherichia coli ETEC H10407]
gi|309704256|emb|CBJ03604.1| ATP-dependent DNA helicase [Escherichia coli ETEC H10407]
Length = 609
Score = 290 bits (742), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 224/374 (59%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + G I+YC + V
Sbjct: 195 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKPG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|260870546|ref|YP_003236948.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H- str.
11128]
gi|415821875|ref|ZP_11510656.1| ATP-dependent DNA helicase RecQ [Escherichia coli OK1180]
gi|417594293|ref|ZP_12244979.1| ATP-dependent DNA helicase RecQ [Escherichia coli 2534-86]
gi|419199610|ref|ZP_13742897.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC8A]
gi|419206760|ref|ZP_13749897.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC8B]
gi|419219119|ref|ZP_13762084.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC8E]
gi|419892091|ref|ZP_14412124.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H8 str.
CVM9570]
gi|419893745|ref|ZP_14413707.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H8 str.
CVM9574]
gi|420088554|ref|ZP_14600425.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H8 str.
CVM9602]
gi|420094057|ref|ZP_14605670.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H8 str.
CVM9634]
gi|424768555|ref|ZP_18195825.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H8 str.
CFSAN001632]
gi|257766902|dbj|BAI38397.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H- str.
11128]
gi|323177836|gb|EFZ63420.1| ATP-dependent DNA helicase RecQ [Escherichia coli OK1180]
gi|345331400|gb|EGW63860.1| ATP-dependent DNA helicase RecQ [Escherichia coli 2534-86]
gi|378039987|gb|EHW02463.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC8B]
gi|378042931|gb|EHW05375.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC8A]
gi|378074570|gb|EHW36605.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC8E]
gi|388348402|gb|EIL14007.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H8 str.
CVM9570]
gi|388366194|gb|EIL29940.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H8 str.
CVM9574]
gi|394389845|gb|EJE66943.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H8 str.
CVM9602]
gi|394397257|gb|EJE73536.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H8 str.
CVM9634]
gi|421945970|gb|EKU03140.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H8 str.
CFSAN001632]
Length = 609
Score = 290 bits (742), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQVNGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|218692098|ref|YP_002400310.1| ATP-dependent DNA helicase RecQ [Escherichia coli ED1a]
gi|218429662|emb|CAR10626.2| ATP-dependent DNA helicase [Escherichia coli ED1a]
Length = 609
Score = 290 bits (742), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 224/374 (59%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQISLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|417610582|ref|ZP_12261072.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_DG131-3]
gi|345353354|gb|EGW85588.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_DG131-3]
Length = 603
Score = 290 bits (742), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 224/374 (59%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 11 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 70
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 71 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 128
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 129 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 188
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 189 LLGLNDPLIQINSFDRPNIRY---MLMEKFKPLDQLMRYVQEQCGKSG--IIYCNSRAKV 243
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 244 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 303
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 304 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 362
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 363 NAMGAFAEAQTCRR 376
>gi|410100569|ref|ZP_11295529.1| ATP-dependent DNA helicase RecQ [Parabacteroides goldsteinii
CL02T12C30]
gi|409215604|gb|EKN08603.1| ATP-dependent DNA helicase RecQ [Parabacteroides goldsteinii
CL02T12C30]
Length = 611
Score = 290 bits (742), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 159/373 (42%), Positives = 219/373 (58%), Gaps = 11/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LKK+FGY+ FRP Q ++IQRI+ K D LV+M TG GKS+C+QLP + TA+V+SPLI+
Sbjct: 9 LKKFFGYTSFRPLQAEIIQRILRKEDSLVLMPTGGGKSICFQLPAIYMPGTAVVISPLIA 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L GI A L S + ++ G +LL+++PE ++ W
Sbjct: 69 LMKDQVGGLVANGIPAAALNSMMPEEERHRIKQLCIQGKIKLLYLSPE--ALVGELHWL- 125
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + L A+DEAHCIS WGHDFR EY QL L+ VP VALTATA + R DI+
Sbjct: 126 LPRMDISLIAIDEAHCISHWGHDFRPEYTQLSVLKEQFPKVPIVALTATADKVTRTDIVT 185
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
LKL++P V ++SFDR NL ++ + +V I +G IVYCM+
Sbjct: 186 QLKLRDPEVFVSSFDRPNLSLTIRRGLNKKEKTSAIVHFIHAHRHQSG--IVYCMSRNST 243
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E +++ L G+KA YH + RE+A FI D + V+ AT+AFGMGIDK +VR V+
Sbjct: 244 ENLAEELSSYGIKAVAYHAGLPPVQREKAQDDFINDRVNVVCATVAFGMGIDKSNVRWVV 303
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
HY P ++E+YYQE GR GRDG+ S L+Y+ + + ES QR ++ L
Sbjct: 304 HYNMPGSIENYYQEIGRAGRDGMKSDTLLFYSVGDLLVLRRFAEES---GQRDTNLQKLN 360
Query: 362 AAQRYCLLTTCRR 374
+RYC CRR
Sbjct: 361 RMRRYCEADICRR 373
>gi|229030497|ref|ZP_04186534.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH1271]
gi|228730807|gb|EEL81750.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH1271]
Length = 705
Score = 290 bits (742), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 153/372 (41%), Positives = 225/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVREDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N+L + + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 NTLGINQENTIMTTFERENLSFSVI---KGQDRHAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLMKAGVSVSKYHAGMSDTDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSACILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|215489150|ref|YP_002331581.1| ATP-dependent DNA helicase RecQ [Escherichia coli O127:H6 str.
E2348/69]
gi|312969449|ref|ZP_07783651.1| ATP-dependent DNA helicase RecQ [Escherichia coli 2362-75]
gi|417758250|ref|ZP_12406310.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC2B]
gi|418999282|ref|ZP_13546858.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC1A]
gi|419010310|ref|ZP_13557717.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC1C]
gi|419016012|ref|ZP_13563345.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC1D]
gi|419020937|ref|ZP_13568233.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC1E]
gi|419026389|ref|ZP_13573601.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC2A]
gi|419031540|ref|ZP_13578679.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC2C]
gi|419037099|ref|ZP_13584169.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC2D]
gi|419042238|ref|ZP_13589252.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC2E]
gi|215267222|emb|CAS11670.1| ATP-dependent DNA helicase [Escherichia coli O127:H6 str. E2348/69]
gi|312285996|gb|EFR13914.1| ATP-dependent DNA helicase RecQ [Escherichia coli 2362-75]
gi|377838948|gb|EHU04052.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC1C]
gi|377839035|gb|EHU04137.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC1A]
gi|377852862|gb|EHU17774.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC1D]
gi|377855915|gb|EHU20778.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC1E]
gi|377858259|gb|EHU23102.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC2A]
gi|377870225|gb|EHU34913.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC2B]
gi|377872200|gb|EHU36849.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC2C]
gi|377874232|gb|EHU38861.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC2D]
gi|377886009|gb|EHU50498.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC2E]
Length = 609
Score = 290 bits (742), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 224/374 (59%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQTREQQLDVMTGCRTGQISLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|407685941|ref|YP_006801114.1| ATP-dependent DNA helicase [Alteromonas macleodii str. 'Balearic
Sea AD45']
gi|407289321|gb|AFT93633.1| ATP-dependent DNA helicase [Alteromonas macleodii str. 'Balearic
Sea AD45']
Length = 613
Score = 290 bits (742), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 156/381 (40%), Positives = 231/381 (60%), Gaps = 23/381 (6%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ LK FGY FR Q +VI ++ E +D LV++ TG GKSLCYQ+P LV TA+VVSPL
Sbjct: 22 TVLKDVFGYDAFRDGQGEVIHQVCEGKDALVLLPTGGGKSLCYQIPALVRQGTAIVVSPL 81
Query: 63 ISLMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLMQDQV LK G+ A +L S A + + + G LL+++PE+ ++ F
Sbjct: 82 ISLMQDQVEQLKALGVKAAYLNSTLEADEQARINDALQAGKLDLLYVSPER--LMQYYFQ 139
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
L A + LFA+DEAHC+S WGHDFR +Y+ L ++++ +P + LTATA + DI
Sbjct: 140 QSLAHADIALFAIDEAHCVSHWGHDFRQDYRALGQIKSRFPSIPVIGLTATADSATQADI 199
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+ L L +P V SFDR N+ Y +V+++ ++F D++V + + GS I+YC +
Sbjct: 200 LTQLNLNDPLVYKGSFDRPNIRY--RVMSKYKAF-DQVVAYVKQQ---EGSGIIYCNSRA 253
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+++ L + G + YH M + RE R F+ D+I ++VAT+AFGMGI+K +VR+
Sbjct: 254 KVDDLHAKLFRQGFRCAAYHAGMDNDERELVQRQFLNDKIDIVVATVAFGMGINKSNVRY 313
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYC--GE----SQTENQR 353
V+H+ P+++ESYYQE+GR GRDG+ S L + + A+ + GE +Q E Q+
Sbjct: 314 VVHHDVPRSVESYYQETGRAGRDGLESEALLLFDEKDAARVKQWIEQGEIAERNQIELQK 373
Query: 354 TAIMESLLAAQRYCLLTTCRR 374
A ME+ AQ TCRR
Sbjct: 374 FAAMEAFSEAQ------TCRR 388
>gi|423390942|ref|ZP_17368168.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG1X1-3]
gi|401636775|gb|EJS54528.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG1X1-3]
Length = 705
Score = 290 bits (742), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 227/373 (60%), Gaps = 13/373 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGS----AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
LM+DQV +L Q GI+A ++ S A+ + +Q A+ G+++LL++ PE+ + + F
Sbjct: 69 LMKDQVDTLIQNGISATYINSSISIAEANQRIQL-AKQGHYKLLYVAPER--LDSMEFVD 125
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDI 179
+L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 126 QLIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDI 185
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
++L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 186 CSTLEINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRK 240
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+++ + L + GV YH M R E LF+RDEI VMVAT AFGMGIDK ++R+
Sbjct: 241 VVDQLYEDLGKAGVSVSKYHAGMSDHDRNEQQELFLRDEISVMVATSAFGMGIDKSNIRY 300
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E
Sbjct: 301 VIHYQLPKNMESYYQEAGRAGRDGLDSECILLYSSQDVQVQRFLIDQSTGESRFSNELEK 360
Query: 360 LLAAQRYCLLTTC 372
L YC C
Sbjct: 361 LQNMTDYCYTEQC 373
>gi|163940564|ref|YP_001645448.1| ATP-dependent DNA helicase RecQ [Bacillus weihenstephanensis KBAB4]
gi|163862761|gb|ABY43820.1| ATP-dependent DNA helicase RecQ [Bacillus weihenstephanensis KBAB4]
Length = 705
Score = 290 bits (742), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 225/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLIQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVREDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N+L + + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 NTLGINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDEI VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLGKAGVSVSKYHAGMSDHDRNEQQELFLRDEISVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSECILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|152972806|ref|YP_001337952.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|329997483|ref|ZP_08302785.1| ATP-dependent DNA helicase RecQ [Klebsiella sp. MS 92-3]
gi|449059651|ref|ZP_21737339.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae hvKP1]
gi|150957655|gb|ABR79685.1| ATP-dependent DNA helicase [Klebsiella pneumoniae subsp. pneumoniae
MGH 78578]
gi|328539051|gb|EGF65090.1| ATP-dependent DNA helicase RecQ [Klebsiella sp. MS 92-3]
gi|448874669|gb|EMB09708.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae hvKP1]
Length = 608
Score = 290 bits (742), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 145/337 (43%), Positives = 213/337 (63%), Gaps = 10/337 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+ +I+ +E RDCLVVM TG GKSLCYQ+P LV G +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQETIIETALEGRDCLVVMPTGGGKSLCYQVPALVMGGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S Q+ V +G +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLLANGVAAACLNSTQSREQQQEVMAGCRSGQVRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +LR + +PF+ALTATA + R DI+
Sbjct: 135 LANWNLAMLAVDEAHCISQWGHDFRPEYAALGQLRQRMPQIPFMALTATADDTTRRDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + ++SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQVSSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRSKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R E F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSRGISAAAYHAGLENDVRAEVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346
>gi|322421607|ref|YP_004200830.1| ATP-dependent DNA helicase RecQ [Geobacter sp. M18]
gi|320127994|gb|ADW15554.1| ATP-dependent DNA helicase RecQ [Geobacter sp. M18]
Length = 598
Score = 290 bits (742), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 151/376 (40%), Positives = 223/376 (59%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L FGY FRP Q+++++ ++ +D V+M TG GKSLCYQ+P L TALVVSP
Sbjct: 6 IKILNDIFGYKAFRPRQQEIVETVLAGKDAFVLMPTGGGKSLCYQVPALCLPGTALVVSP 65
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV +L++ G+ A SA ++ V + G +LL++ PE+ ++ F
Sbjct: 66 LISLMKDQVDALRENGVAAACYNSALGEAEARRVLAELHAGELKLLYVAPER--LLSDGF 123
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
++ + LFA+DEAHC+S+WGHDFR EY QL LR +P +ALTATA + + D
Sbjct: 124 LERIKTLPISLFAIDEAHCVSQWGHDFRPEYAQLGVLREIFPQIPMIALTATADAQTKGD 183
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I++ L L++ A FDR N+ YGV + + + F ++L + AG IVY ++
Sbjct: 184 ILSRLGLEDAACFFAGFDRPNIRYGV--MEKNKPF-NQLTAFLATRKDEAG--IVYALSR 238
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K VEE+++ L G+KA YH + K R + F+RD+++++VAT+AFGMGIDK +VR
Sbjct: 239 KRVEEVARKLCGAGIKAAAYHAGLPDKERHQVQEAFLRDDVKIVVATVAFGMGIDKSNVR 298
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+HY PK++ESYYQE+GR GRDG+ + L + + A G E Q +
Sbjct: 299 FVVHYDMPKSIESYYQETGRAGRDGLPADALLLFGYGDIAVARGLIGNGGNEEQNRIELH 358
Query: 359 SLLAAQRYCLLTTCRR 374
L + TCRR
Sbjct: 359 KLNCMVGFAEAQTCRR 374
>gi|409911451|ref|YP_006889916.1| ATP-dependent DNA helicase RecQ [Geobacter sulfurreducens KN400]
gi|298505021|gb|ADI83744.1| ATP-dependent DNA helicase RecQ [Geobacter sulfurreducens KN400]
Length = 603
Score = 290 bits (742), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 147/353 (41%), Positives = 214/353 (60%), Gaps = 15/353 (4%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
++ L+ FGY FRP+Q++++ R+ D V+M TG GKSLCYQ+P LV +V+SP
Sbjct: 6 LAVLRTVFGYRSFRPFQEEIVDRVARGGDTFVLMPTGGGKSLCYQIPSLVRPGVGIVISP 65
Query: 62 LISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV +L++ G+ A S + V + G LL++ PE+ ++ +F
Sbjct: 66 LISLMKDQVDALRENGVAAACYNSTLGERESRQVLARLHGGELDLLYVAPER--LMTDAF 123
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+L + + LFA+DEAHC+S+WGHDFR EY +L +LR VP +ALTATA + R D
Sbjct: 124 LERLREIPIALFAIDEAHCVSQWGHDFRPEYVELGRLRGLFPTVPMIALTATADAQTRGD 183
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L L++ + + FDR N+ Y V+ + + F ++E L + I VYC++
Sbjct: 184 IVTRLGLRDAEMFVTGFDRPNIRY--SVLEKQKPF--RQLEEFLATRPREAGI-VYCLSR 238
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K VEE+++ L+ GV+A YH + R F+RD+IRV+VAT+AFGMGIDKP+VR
Sbjct: 239 KRVEEVAEKLRAAGVEAAAYHAGLADAERSRVQEAFLRDDIRVVVATVAFGMGIDKPNVR 298
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTEN 351
V+HY PK +ESYYQE+GR GRDG+ + L F GD S E+
Sbjct: 299 FVVHYDLPKNIESYYQETGRAGRDGLPAEALLL-----FGYGDIPVSRSLIES 346
>gi|110644147|ref|YP_671877.1| ATP-dependent DNA helicase RecQ [Escherichia coli 536]
gi|419702662|ref|ZP_14230251.1| ATP-dependent DNA helicase RecQ [Escherichia coli SCI-07]
gi|110345739|gb|ABG71976.1| ATP-dependent DNA helicase RecQ [Escherichia coli 536]
gi|380346195|gb|EIA34494.1| ATP-dependent DNA helicase RecQ [Escherichia coli SCI-07]
Length = 609
Score = 290 bits (742), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 224/374 (59%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQISLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|407682057|ref|YP_006797231.1| ATP-dependent DNA helicase [Alteromonas macleodii str. 'English
Channel 673']
gi|407243668|gb|AFT72854.1| ATP-dependent DNA helicase [Alteromonas macleodii str. 'English
Channel 673']
Length = 613
Score = 290 bits (742), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 156/381 (40%), Positives = 231/381 (60%), Gaps = 23/381 (6%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ LK FGY FR Q +VI ++ E +D LV++ TG GKSLCYQ+P LV TA+VVSPL
Sbjct: 22 TVLKDVFGYDAFRDGQGEVIHQVCEGKDALVLLPTGGGKSLCYQIPALVRQGTAIVVSPL 81
Query: 63 ISLMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLMQDQV LK G+ A +L S A + + + G LL+++PE+ ++ F
Sbjct: 82 ISLMQDQVEQLKALGVKAAYLNSTLEADEQARINDALQAGKLDLLYVSPER--LMQYYFQ 139
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
L A + LFA+DEAHC+S WGHDFR +Y+ L ++++ +P + LTATA + DI
Sbjct: 140 QSLAHADIALFAIDEAHCVSHWGHDFRQDYRALGQIKSRFPSIPVIGLTATADSATQADI 199
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+ L L +P V SFDR N+ Y +V+++ ++F D++V + + GS I+YC +
Sbjct: 200 LTQLNLNDPLVYKGSFDRPNIRY--RVMSKYKAF-DQVVAYVKQQ---EGSGIIYCNSRA 253
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+++ L + G + YH M + RE R F+ D+I ++VAT+AFGMGI+K +VR+
Sbjct: 254 KVDDLHAKLFRQGFRCAAYHAGMDNDERELVQRQFLNDKIDIVVATVAFGMGINKSNVRY 313
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYC--GE----SQTENQR 353
V+H+ P+++ESYYQE+GR GRDG+ S L + + A+ + GE +Q E Q+
Sbjct: 314 VVHHDVPRSVESYYQETGRAGRDGLESEALLLFDEKDAARVKQWIEQGEIAERNQIELQK 373
Query: 354 TAIMESLLAAQRYCLLTTCRR 374
A ME+ AQ TCRR
Sbjct: 374 FAAMEAFSEAQ------TCRR 388
>gi|432555903|ref|ZP_19792618.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE47]
gi|431080717|gb|ELD87511.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE47]
Length = 611
Score = 290 bits (742), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRVVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|378775278|ref|YP_005177521.1| ATP-dependent DNA helicase RecQ [Pasteurella multocida 36950]
gi|356597826|gb|AET16552.1| ATP-dependent DNA helicase RecQ [Pasteurella multocida 36950]
Length = 632
Score = 290 bits (742), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 157/376 (41%), Positives = 227/376 (60%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L FGY FR Q++VI + +D LV+MATG+GKSLCYQ+P L LV+SP
Sbjct: 27 LDMLHAVFGYQSFRKGQEEVIDATLMGKDSLVIMATGNGKSLCYQIPALCFEGLTLVISP 86
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L GI A++L S+QT VQ K +G +LL+++PEK ++ SF
Sbjct: 87 LISLMKDQVDQLLANGIEADYLNSSQTFTEQQQVQNKLMSGTLKLLYVSPEK--VMTTSF 144
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + V A+DEAHCIS+WGHDFR EY QL L++ P +ALTATA R D
Sbjct: 145 FHLISHCKVSFVAIDEAHCISQWGHDFRPEYTQLGGLKSCFPHAPIMALTATADHATRQD 204
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L L++P+V I SFDR N+ Y ++ + + +++L + +L +G I+YC +
Sbjct: 205 ILRHLNLQSPHVYIGSFDRPNIRY--TLVEKFKP-MEQLCRFVLGQKGKSG--IIYCNSR 259
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I+++L+ GV A YH + + RE+ R F RD ++V+VAT+AFGMGI+K +VR
Sbjct: 260 SKVERIAESLRNKGVSAQAYHAGLETAQREQVQRAFQRDNVQVVVATIAFGMGINKSNVR 319
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+H+ P+++ESYYQE+GR GRD + + L+Y +++A E QR
Sbjct: 320 FVVHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLHKILLEKPESPQRQIEAL 379
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 380 KLQAIGEFAESQTCRR 395
>gi|191166095|ref|ZP_03027930.1| ATP-dependent DNA helicase RecQ [Escherichia coli B7A]
gi|209921301|ref|YP_002295385.1| ATP-dependent DNA helicase RecQ [Escherichia coli SE11]
gi|300823362|ref|ZP_07103493.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 119-7]
gi|307313604|ref|ZP_07593224.1| ATP-dependent DNA helicase RecQ [Escherichia coli W]
gi|309796230|ref|ZP_07690640.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 145-7]
gi|331670669|ref|ZP_08371506.1| ATP-dependent DNA helicase RecQ [Escherichia coli TA271]
gi|331679934|ref|ZP_08380597.1| ATP-dependent DNA helicase RecQ [Escherichia coli H591]
gi|378715260|ref|YP_005280153.1| ATP-dependent DNA helicase RecQ [Escherichia coli KO11FL]
gi|386611198|ref|YP_006126684.1| ATP-dependent DNA helicase [Escherichia coli W]
gi|386699326|ref|YP_006163163.1| ATP-dependent DNA helicase RecQ [Escherichia coli KO11FL]
gi|386711730|ref|YP_006175451.1| ATP-dependent DNA helicase RecQ [Escherichia coli W]
gi|416345829|ref|ZP_11679244.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4100B]
gi|417221737|ref|ZP_12025177.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.154]
gi|417241736|ref|ZP_12037493.1| ATP-dependent DNA helicase RecQ [Escherichia coli 9.0111]
gi|417269798|ref|ZP_12057158.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3.3884]
gi|419947661|ref|ZP_14463980.1| ATP-dependent DNA helicase RecQ [Escherichia coli CUMT8]
gi|422778553|ref|ZP_16832201.1| ATP-dependent DNA helicase RecQ [Escherichia coli H120]
gi|423708132|ref|ZP_17682512.1| ATP-dependent DNA helicase recQ [Escherichia coli B799]
gi|432379058|ref|ZP_19622038.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE12]
gi|432762684|ref|ZP_19997145.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE48]
gi|432811570|ref|ZP_20045425.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE101]
gi|432829440|ref|ZP_20063054.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE135]
gi|432836825|ref|ZP_20070344.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE136]
gi|432965586|ref|ZP_20154507.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE203]
gi|433094218|ref|ZP_20280465.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE138]
gi|190903871|gb|EDV63585.1| ATP-dependent DNA helicase RecQ [Escherichia coli B7A]
gi|209914560|dbj|BAG79634.1| DNA helicase RecQ [Escherichia coli SE11]
gi|300524148|gb|EFK45217.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 119-7]
gi|306906585|gb|EFN37097.1| ATP-dependent DNA helicase RecQ [Escherichia coli W]
gi|308120112|gb|EFO57374.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 145-7]
gi|315063115|gb|ADT77442.1| ATP-dependent DNA helicase [Escherichia coli W]
gi|320198470|gb|EFW73071.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4100B]
gi|323380821|gb|ADX53089.1| ATP-dependent DNA helicase RecQ [Escherichia coli KO11FL]
gi|323943861|gb|EGB39955.1| ATP-dependent DNA helicase RecQ [Escherichia coli H120]
gi|331062142|gb|EGI34064.1| ATP-dependent DNA helicase RecQ [Escherichia coli TA271]
gi|331072481|gb|EGI43813.1| ATP-dependent DNA helicase RecQ [Escherichia coli H591]
gi|383390853|gb|AFH15811.1| ATP-dependent DNA helicase RecQ [Escherichia coli KO11FL]
gi|383407422|gb|AFH13665.1| ATP-dependent DNA helicase RecQ [Escherichia coli W]
gi|385709045|gb|EIG46047.1| ATP-dependent DNA helicase recQ [Escherichia coli B799]
gi|386201539|gb|EII00530.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.154]
gi|386211853|gb|EII22304.1| ATP-dependent DNA helicase RecQ [Escherichia coli 9.0111]
gi|386228603|gb|EII55959.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3.3884]
gi|388422564|gb|EIL82138.1| ATP-dependent DNA helicase RecQ [Escherichia coli CUMT8]
gi|430895567|gb|ELC17829.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE12]
gi|431315306|gb|ELG03229.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE48]
gi|431359645|gb|ELG46278.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE101]
gi|431381178|gb|ELG65810.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE136]
gi|431382069|gb|ELG66414.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE135]
gi|431476162|gb|ELH55956.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE203]
gi|431606692|gb|ELI76066.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE138]
Length = 611
Score = 290 bits (742), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 224/374 (59%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQINSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|422355837|ref|ZP_16436541.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 117-3]
gi|324016198|gb|EGB85417.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 117-3]
Length = 611
Score = 290 bits (741), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 224/374 (59%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQINSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|421112108|ref|ZP_15572572.1| ATP-dependent DNA helicase, RecQ family [Leptospira santarosai str.
JET]
gi|410802517|gb|EKS08671.1| ATP-dependent DNA helicase, RecQ family [Leptospira santarosai str.
JET]
Length = 621
Score = 290 bits (741), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 161/382 (42%), Positives = 234/382 (61%), Gaps = 13/382 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKT-ALVV 59
+ S+LK+ +G S FR QK+ I+ ++ +D LV++ TG GKSL YQLP ++ G + LV+
Sbjct: 12 LESSLKEIWGMSRFRTGQKESIESVLNGKDTLVILPTGGGKSLVYQLPAVLEGSSLTLVI 71
Query: 60 SPLISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPI 116
SPLI+LM+DQV SLK +GI AE+ S Q D + ++A TG ++L+++PEKA +
Sbjct: 72 SPLIALMKDQVDSLKAKGIAAEYCNSTQDDLEQLRILSRAATGKIRILYLSPEKA--LSR 129
Query: 117 SFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR-TFLLGVPFVALTATATEKV 175
+ L K + AVDEAHC+S+WGHDFR EY++L +LR + +P VALTATAT KV
Sbjct: 130 QVFEILPKLPLDRIAVDEAHCVSQWGHDFRPEYRKLHELRDKYKRPIPIVALTATATPKV 189
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILK---SVAGAGSII 232
DI +SL LK+P + SF R+NL + V+ S +EL++ +++ G I
Sbjct: 190 IQDISDSLGLKDPTLIKGSFYRENLRFSVRFPQNETSKENELLKLLIRGNFQKTENGKAI 249
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
+YC T + VE I LK+ G K G YH +RE+A + + V+VAT AFGMG+
Sbjct: 250 IYCATRQKVESIYNFLKKNGFKVGKYHAGRTDSSREKAQNGYSIGKTNVLVATNAFGMGL 309
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ 352
D P+VR ++HY P +LESYYQE+GR GRDG +S C L+Y ++ +F G+ EN
Sbjct: 310 DNPNVRLIVHYQIPASLESYYQEAGRAGRDGKSSNCVLFYHPADLVTQNFIIGK---ENN 366
Query: 353 RTAIMESLLAAQRYCLLTTCRR 374
R + L + Y + CR+
Sbjct: 367 RKGGVTLLSFVKEYAISNGCRQ 388
>gi|366158888|ref|ZP_09458750.1| ATP-dependent DNA helicase RecQ [Escherichia sp. TW09308]
Length = 609
Score = 290 bits (741), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPMLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENDVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|417604728|ref|ZP_12255290.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_94C]
gi|345347248|gb|EGW79562.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_94C]
Length = 609
Score = 290 bits (741), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 224/374 (59%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQINSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|383316443|ref|YP_005377285.1| ATP-dependent DNA helicase RecQ [Frateuria aurantia DSM 6220]
gi|379043547|gb|AFC85603.1| ATP-dependent DNA helicase RecQ [Frateuria aurantia DSM 6220]
Length = 602
Score = 290 bits (741), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 152/379 (40%), Positives = 230/379 (60%), Gaps = 17/379 (4%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
S L+ FGY+ FR Q+ V++ + E D LV+M TG GKSLCYQ+P L+ +VVSPL
Sbjct: 7 SILQSVFGYTAFRGQQQAVVEHVAEGGDALVLMPTGGGKSLCYQVPALLRSGLGVVVSPL 66
Query: 63 ISLMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
I+LMQDQV +L+Q G+ A +L S A+ +V+ + +G QLL++ PE+ ++
Sbjct: 67 IALMQDQVDALRQLGVAAAYLNSSLDAEAQRAVERQMMSGELQLLYVAPER--LLSPRLL 124
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+ L + + LFA+DEAHC+S+WGHDFR EY++L +L+ VP +ALTATA + R +I
Sbjct: 125 AMLERIEIALFAIDEAHCVSQWGHDFRPEYRELAELQRRFPQVPRIALTATADPRTREEI 184
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
I L L+ ++SFDR N+ Y V +G+ ++ + + S ++YC++ K
Sbjct: 185 IERLGLQQARQFLSSFDRPNIRYRVGQRQQGRKQLEAFLADHRGD-----SGVIYCLSRK 239
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+E + L+ +G A YH + + R E + F+R++ VMVAT+AFGMGIDKPDVR
Sbjct: 240 KVDETAGWLQAMGFNALAYHAGLEAALRSEHQQRFLREDGVVMVATVAFGMGIDKPDVRF 299
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI--- 356
V H P+++E YYQE+GR GRDG+ + W+ Y ++ +S++ + R I
Sbjct: 300 VAHLDLPRSIEGYYQETGRAGRDGLPADAWMVYGLNDVVTMSQMIAQSESADDRKRIERQ 359
Query: 357 -MESLLAAQRYCLLTTCRR 374
+E+LL Y TTCRR
Sbjct: 360 KLEALLG---YAEATTCRR 375
>gi|302337379|ref|YP_003802585.1| ATP-dependent DNA helicase RecQ [Spirochaeta smaragdinae DSM 11293]
gi|301634564|gb|ADK79991.1| ATP-dependent DNA helicase RecQ [Spirochaeta smaragdinae DSM 11293]
Length = 601
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 156/373 (41%), Positives = 230/373 (61%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK FGYS F+ QK+VI I+ RD M TG GKSLCYQ+P L+ +VVSPLI+
Sbjct: 8 LKSVFGYSSFKANQKEVINAILAGRDLFAAMPTGGGKSLCYQIPALLFDGLTVVVSPLIA 67
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT-DSSVQT--KAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV + GI A FL S+Q+ + + +T + G +LL+++PE+ + F +
Sbjct: 68 LMKDQVDAALSLGIPAAFLNSSQSQEDATETYRRLYRGEIKLLYLSPERLAVD--GFTER 125
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L V LFAVDEAHC+SEWGHDFR +Y L +LRT VP A TATAT +V+ DII
Sbjct: 126 LAAFNVSLFAVDEAHCLSEWGHDFRPDYLALAQLRTAFPTVPIAAFTATATVRVQEDIIR 185
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L+L++P++ ASF+RK LFY +V+ + + + ++ Q I +G IVY ++ KD
Sbjct: 186 LLRLEDPFILRASFNRKELFY--QVLPKTE-VLSQIAQYIGAHPDQSG--IVYRLSRKDT 240
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
++ L +LG++A YH M R F D+++V+VAT AFGMGIDK ++R+VI
Sbjct: 241 DKTVDYLGKLGIRALPYHAGMDKDERARNQERFNNDDVQVIVATTAFGMGIDKNNIRYVI 300
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H PK++E YYQE+GR GRDG+ S C L++ ++ A+ +++ + + ++ E+L
Sbjct: 301 HGDLPKSMEGYYQETGRAGRDGLESQCILFFGTADIARLNYFIRQIEDPAEQRRSRENLD 360
Query: 362 AAQRYCLLTTCRR 374
R+ + CRR
Sbjct: 361 RMARFASVNVCRR 373
>gi|449517399|ref|XP_004165733.1| PREDICTED: ATP-dependent DNA helicase RecQ-like [Cucumis sativus]
Length = 280
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 131/190 (68%), Positives = 159/190 (83%)
Query: 185 LKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEI 244
+K+P VTI SFDR NLFYGVK N + ++ELV +I K V GS I+YC TIKDVE+I
Sbjct: 1 MKDPQVTIGSFDRTNLFYGVKFFNHRRLLMNELVLDISKYVGSGGSTIIYCRTIKDVEQI 60
Query: 245 SKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYG 304
SK+LK+ G+ AG YH QM ++R E+HRLF+RDE++VMVAT+AFGMGIDKP++R VIHYG
Sbjct: 61 SKSLKEAGISAGIYHAQMVKESRAESHRLFVRDELQVMVATVAFGMGIDKPNIRLVIHYG 120
Query: 305 CPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLLAAQ 364
CPK+LESYYQESGRCGRDGIASVCWLYY RS+FAK + YCG+S TEN+RTAIMESL+AAQ
Sbjct: 121 CPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKAELYCGDSPTENERTAIMESLMAAQ 180
Query: 365 RYCLLTTCRR 374
+YC + TCRR
Sbjct: 181 QYCSIATCRR 190
>gi|419313842|ref|ZP_13855697.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC11E]
gi|378154783|gb|EHX15854.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC11E]
Length = 454
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|419958981|ref|ZP_14475038.1| ATP-dependent DNA helicase RecQ [Enterobacter cloacae subsp.
cloacae GS1]
gi|388605950|gb|EIM35163.1| ATP-dependent DNA helicase RecQ [Enterobacter cloacae subsp.
cloacae GS1]
Length = 609
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 157/374 (41%), Positives = 223/374 (59%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L + FGY FRP Q+ +I+ ++E RDCLVVM TG GKSLCYQ+P LV +VVSPLIS
Sbjct: 17 LHETFGYQQFRPGQETIIETVLEGRDCLVVMPTGGGKSLCYQVPALVLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S QT V TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLLANGVAAACLNSTQTREQQQEVMAGCRTGQVRLLYIAPER--LMLDNFLDH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPELPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +PY+ ++SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPYIQVSSFDRPNIRY---MLMEKFKPLDQLLRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQNRGFSAAAYHAGLENHIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|255037625|ref|YP_003088246.1| ATP-dependent DNA helicase RecQ [Dyadobacter fermentans DSM 18053]
gi|254950381|gb|ACT95081.1| ATP-dependent DNA helicase RecQ [Dyadobacter fermentans DSM 18053]
Length = 717
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 155/382 (40%), Positives = 225/382 (58%), Gaps = 21/382 (5%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ LKKYFGY FRP Q ++I I+ RDC+V+M TG GKS+C+Q+P ++ +V+SP
Sbjct: 6 LEALKKYFGYDSFRPQQSEIIDTIMANRDCMVLMPTGGGKSVCFQIPAVLRDGLTIVISP 65
Query: 62 LISLMQDQVMSLKQRGINAEFLGS----AQTDSSVQTKAETGYFQLLFMTPEKACIIPIS 117
LI+LM+DQV +L+ GINA FL S A+ D + + G +LL++ PE+ + +
Sbjct: 66 LIALMKDQVEALRGNGINAAFLNSTISGAEQDQ-IMWQIRLGELKLLYIAPER--LFAGN 122
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
+ L + V LFA+DE+HCIS WGHDFR EY+QL+ L+ VP VALTATA R
Sbjct: 123 TFDLLREWNVTLFAIDESHCISSWGHDFRPEYRQLNLLKLRFPDVPIVALTATADRVTRR 182
Query: 178 DIINSLKLKNPYVTIASFDRKNL----FYGVKVINRGQSFVDELVQEILKSVAGAGSIIV 233
DI+ L +++ I+SFDR NL G K I + Q FV+ K G I+
Sbjct: 183 DILKQLNIEHAETFISSFDRPNLSLNVLPGRKRIEQIQRFVN-------KHEGQPG--II 233
Query: 234 YCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGID 293
YC++ K E ++ +L++ G + YH M R + F+RD+I+++VAT+AFGMGID
Sbjct: 234 YCLSRKGTETVAASLQKAGFRVAYYHAGMPGDKRSQVQENFLRDDIQIIVATIAFGMGID 293
Query: 294 KPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN-FAKGDFYCGESQTENQ 352
K +VR VIHY P +ES+YQE GR GRDG ++ L+Y+ + + D Q+ Q
Sbjct: 294 KSNVRWVIHYNLPSNVESFYQEIGRAGRDGASADTVLFYSYLDIITRQDMINNSDQSAEQ 353
Query: 353 RTAIMESLLAAQRYCLLTTCRR 374
+ + L ++Y CRR
Sbjct: 354 KELLHAKLNRMKQYAEADICRR 375
>gi|148826626|ref|YP_001291379.1| prolyl-tRNA synthetase [Haemophilus influenzae PittEE]
gi|148716786|gb|ABQ98996.1| prolyl-tRNA synthetase [Haemophilus influenzae PittEE]
Length = 615
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 160/376 (42%), Positives = 224/376 (59%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+S LK FGY FR Q++VI + +D LVVMATG+GKSLCYQ+P L LV+SP
Sbjct: 17 LSVLKSVFGYQSFRKGQEEVINATLNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISP 76
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ GI A+FL S+QT VQ K +G +LL+++PEK ++ SF
Sbjct: 77 LISLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEK--VMTNSF 134
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + + VC A+DEAHCIS+WGHDFR EY QL L+ P +ALTATA + D
Sbjct: 135 FQLISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATADYATQQD 194
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L LKN + I SFDR N+ Y + +++L + +L +G I+YC +
Sbjct: 195 ILRHLNLKNLHKYIGSFDRPNIRY---TLEEKYKPMEQLTRFVLAQKGKSG--IIYCNSR 249
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I+++L+ GV A YH M + R+ + F RD ++V+VAT+AFGMGI+K +VR
Sbjct: 250 NKVERITESLRNKGVSAAAYHAGMETARRDRVQQDFQRDNVQVVVATIAFGMGINKSNVR 309
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V H+ P+++ESYYQE+GR GRD + + L+Y +++A E QR
Sbjct: 310 FVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLEKPETPQRQIEQH 369
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 370 KLEAIGEFAESQTCRR 385
>gi|441506545|ref|ZP_20988513.1| ATP-dependent DNA helicase RecQ [Photobacterium sp. AK15]
gi|441425751|gb|ELR63245.1| ATP-dependent DNA helicase RecQ [Photobacterium sp. AK15]
Length = 613
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 156/373 (41%), Positives = 221/373 (59%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FR Q++VI+ + E RDCLV+M TG GKSLCYQ+P L+ LVVSPLIS
Sbjct: 21 LQDVFGYQTFRTGQQEVIEAVAEGRDCLVIMPTGGGKSLCYQIPALMCDGLTLVVSPLIS 80
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQT---KAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV LK G+ A L S Q+ ++Q + G +L +++PE+ ++ F +
Sbjct: 81 LMKDQVDQLKANGVAAACLNSTQSREAMQETYRAMQDGEVKLAYVSPER--VMTREFMER 138
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + L AVDEAHCIS+WGHDFR EY L L+ +P +ALTATA E R DI++
Sbjct: 139 LRDMPLSLVAVDEAHCISQWGHDFRPEYAALGTLKQHFDQLPIIALTATADETTRQDILS 198
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P++ + SFDR N+ Y ++ + S + L+ V G I VYC + K V
Sbjct: 199 RLSLTDPHIYLGSFDRPNIRYTLQEKYKPMS----QLSSYLRGVRGQCGI-VYCNSRKRV 253
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+I++ L + G++A YH + R F RD+I ++VAT+AFGMGI+KP+VR V+
Sbjct: 254 EQITEKLCESGIRAAAYHAGLEFDERARVQEDFQRDDIHIVVATVAFGMGINKPNVRFVV 313
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
HY P+ +ESYYQE+GR GRDG+ + ++Y S+ A E + Q+ L
Sbjct: 314 HYDIPRNIESYYQETGRAGRDGLPAEAVMFYDPSDLAWLRRCLDEKEDGAQKQIESHKLN 373
Query: 362 AAQRYCLLTTCRR 374
A + TCRR
Sbjct: 374 AMGAFAEAQTCRR 386
>gi|432374232|ref|ZP_19617263.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE11]
gi|430893654|gb|ELC15978.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE11]
Length = 611
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPMLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSKGISAAAYHAGLENDVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|423419182|ref|ZP_17396271.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG3X2-1]
gi|401105788|gb|EJQ13755.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG3X2-1]
Length = 705
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 227/373 (60%), Gaps = 13/373 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGS----AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
LM+DQV +L Q GI+A ++ S A+ + +Q A+ G+++LL++ PE+ + + F
Sbjct: 69 LMKDQVDTLIQNGISATYINSSISIAEANQRIQL-AKQGHYKLLYVAPER--LDSMEFVD 125
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDI 179
+L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 126 QLIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDI 185
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
++L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 186 CSTLEINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRK 240
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+++ + L + GV YH M R E LF+RDEI VMVAT AFGMGIDK ++R+
Sbjct: 241 VVDQLYEDLGKAGVSVSKYHAGMSDHDRNEQQELFLRDEISVMVATSAFGMGIDKSNIRY 300
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E
Sbjct: 301 VIHYQLPKNMESYYQEAGRAGRDGLDSECILLYSSQDVQVQRFLIDQSTGESRFSNELEK 360
Query: 360 LLAAQRYCLLTTC 372
L YC C
Sbjct: 361 LQNMTDYCHTEQC 373
>gi|77361487|ref|YP_341062.1| ATP-dependent DNA helicase [Pseudoalteromonas haloplanktis TAC125]
gi|76876398|emb|CAI87620.1| ATP-dependent DNA helicase [Pseudoalteromonas haloplanktis TAC125]
Length = 607
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 150/375 (40%), Positives = 229/375 (61%), Gaps = 10/375 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ LK+ FGYS FR QK VI I +D LV++ TG GKS+CYQ+P LV +V+SPL
Sbjct: 17 AVLKQVFGYSEFRDGQKTVIDAAINGQDSLVLLPTGGGKSVCYQIPALVLEGVTIVISPL 76
Query: 63 ISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLMQDQV L+ G+ A ++ ++ + V + G +LL++ PEK ++ F
Sbjct: 77 ISLMQDQVTQLQALGVKAAYINNSLAREEQQQVYQQLHQGLIKLLYVAPEK--VLQREFL 134
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L + LFA+DEAHC+S WGHDFR Y +L +L+ VP +ALTATA + R DI
Sbjct: 135 ERLSHLKISLFAIDEAHCVSHWGHDFRPHYFRLSELKQRFAHVPMMALTATADKATRFDI 194
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+ LKL+ PY+ SFDR N+ Y ++ + + V +L++ + + + +G I+YC + K
Sbjct: 195 VEQLKLQQPYIHTGSFDRPNIRYTIE--EKFKPMV-QLLRYLKEQKSQSG--IIYCTSRK 249
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V++I++ L G+ A YH M ++ R+ F RD+I+++VAT+AFGMGI+KP+VR
Sbjct: 250 RVDDIAEKLADAGLNAAAYHAGMSNEQRQFVQTGFARDDIQIVVATVAFGMGINKPNVRF 309
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V+HY PK++ESYYQE+GR GRDG+A+ +Y+ ++ + + + E +R +
Sbjct: 310 VLHYDIPKSIESYYQETGRAGRDGLAAEAIMYFDPADIGRVRRFFEDIDDEQRRRVEEQR 369
Query: 360 LLAAQRYCLLTTCRR 374
A + TCRR
Sbjct: 370 FNAMASFAEAQTCRR 384
>gi|238892418|ref|YP_002917152.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|365144577|ref|ZP_09348793.1| ATP-dependent DNA helicase recQ [Klebsiella sp. 4_1_44FAA]
gi|378976322|ref|YP_005224463.1| ATP-dependent DNA helicase [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|386037440|ref|YP_005957353.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae KCTC 2242]
gi|402783066|ref|YP_006638612.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|419976110|ref|ZP_14491512.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419981887|ref|ZP_14497157.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419987417|ref|ZP_14502537.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419992987|ref|ZP_14507936.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419999205|ref|ZP_14513983.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420004974|ref|ZP_14519604.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420010567|ref|ZP_14525038.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420016807|ref|ZP_14531094.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420022207|ref|ZP_14536378.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420027870|ref|ZP_14541857.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420033622|ref|ZP_14547424.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|420039320|ref|ZP_14552956.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420045195|ref|ZP_14558666.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420051125|ref|ZP_14564416.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420056758|ref|ZP_14569910.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420061820|ref|ZP_14574803.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420068079|ref|ZP_14580864.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420073504|ref|ZP_14586129.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420079309|ref|ZP_14591756.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420085306|ref|ZP_14597536.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|421908873|ref|ZP_16338705.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|421917229|ref|ZP_16346791.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|424833268|ref|ZP_18257996.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|424930893|ref|ZP_18349265.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|425084062|ref|ZP_18487159.1| ATP-dependent DNA helicase recQ [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|425094091|ref|ZP_18497174.1| ATP-dependent DNA helicase recQ [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|428151187|ref|ZP_18998930.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|428934219|ref|ZP_19007747.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae JHCK1]
gi|428939135|ref|ZP_19012250.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae VA360]
gi|238544734|dbj|BAH61085.1| ATP-dependent DNA helicase [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|339764568|gb|AEK00789.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae KCTC 2242]
gi|363648000|gb|EHL87187.1| ATP-dependent DNA helicase recQ [Klebsiella sp. 4_1_44FAA]
gi|364515733|gb|AEW58861.1| ATP-dependent DNA helicase [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|397341372|gb|EJJ34552.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397342014|gb|EJJ35183.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397344702|gb|EJJ37833.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397358598|gb|EJJ51314.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397359601|gb|EJJ52294.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397363627|gb|EJJ56265.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397374431|gb|EJJ66767.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397378264|gb|EJJ70477.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397385030|gb|EJJ77135.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397392581|gb|EJJ84369.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397394580|gb|EJJ86306.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397403296|gb|EJJ94873.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397409845|gb|EJK01145.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397410215|gb|EJK01502.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397420262|gb|EJK11348.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397427007|gb|EJK17798.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397429873|gb|EJK20579.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397437837|gb|EJK28380.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397443829|gb|EJK34130.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397449321|gb|EJK39461.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|402543905|gb|AFQ68054.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|405597672|gb|EKB70935.1| ATP-dependent DNA helicase recQ [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|405610253|gb|EKB83062.1| ATP-dependent DNA helicase recQ [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|407805080|gb|EKF76331.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|410117240|emb|CCM81330.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|410120477|emb|CCM89416.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|414710718|emb|CCN32422.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|426303386|gb|EKV65559.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae JHCK1]
gi|426304490|gb|EKV66633.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae VA360]
gi|427538860|emb|CCM95068.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
Length = 608
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 145/337 (43%), Positives = 212/337 (62%), Gaps = 10/337 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+ +I+ +E RDCLVVM TG GKSLCYQ+P LV G +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQETIIETALEGRDCLVVMPTGGGKSLCYQVPALVMGGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S Q+ V +G +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLLANGVAAACLNSTQSREQQQEVMAGCRSGQVRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +LR + +PF+ALTATA + R DI+
Sbjct: 135 LANWNLAMLAVDEAHCISQWGHDFRPEYAALGQLRQRMPQIPFMALTATADDTTRRDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + ++SFDR N+ Y ++ +D+L++ + +G I+YC + V
Sbjct: 195 LLGLNDPLIQVSSFDRPNIRY---MLMEKFKPLDQLMRYVQDQRGKSG--IIYCNSRSKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R E F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSRGISAAAYHAGLENDVRAEVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346
>gi|229018126|ref|ZP_04175001.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH1273]
gi|229024308|ref|ZP_04180766.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH1272]
gi|228737002|gb|EEL87539.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH1272]
gi|228743217|gb|EEL93342.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH1273]
Length = 705
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 227/373 (60%), Gaps = 13/373 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGS----AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
LM+DQV +L Q GI+A ++ S A+ + +Q A+ G+++LL++ PE+ + + F
Sbjct: 69 LMKDQVDTLIQNGISATYINSSISIAEANQRIQL-AKQGHYKLLYVAPER--LDSMEFVD 125
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDI 179
+L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 126 QLIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDI 185
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
++L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 186 CSTLEINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRK 240
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+++ + L + GV YH M R E LF+RDEI VMVAT AFGMGIDK ++R+
Sbjct: 241 VVDQLYEDLGKAGVSVSKYHAGMSDHDRNEQQELFLRDEISVMVATSAFGMGIDKSNIRY 300
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E
Sbjct: 301 VIHYQLPKNMESYYQEAGRAGRDGLDSECILLYSSQDVQVQRFLIDQSTGESRFSNELEK 360
Query: 360 LLAAQRYCLLTTC 372
L YC C
Sbjct: 361 LQNMTDYCHTEQC 373
>gi|422007125|ref|ZP_16354111.1| ATP-dependent DNA helicase RecQ [Providencia rettgeri Dmel1]
gi|414097015|gb|EKT58670.1| ATP-dependent DNA helicase RecQ [Providencia rettgeri Dmel1]
Length = 608
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 163/373 (43%), Positives = 219/373 (58%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L FGY FRP Q VI I++KRDCLV+M TG GKSLCYQ+P LV LVVSPLIS
Sbjct: 17 LNSTFGYQSFRPGQDAVIGAILDKRDCLVLMPTGGGKSLCYQVPALVKEGVTLVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+NA L S+QT + E G +LL++ PE+ ++ F S+
Sbjct: 77 LMKDQVDQLRLHGVNAACLNSSQTSQEQRQIMELCSQGEIKLLYVAPER--LLTDYFLSQ 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + L AVDEAHCIS+WGHDFR EY+ L +LR L VP +ALTATA E R DII
Sbjct: 135 LAGWNITLLAVDEAHCISQWGHDFRPEYRALGQLRQSLPNVPVMALTATADETTRADIIR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L+L P V ++SFDR N+ Y + +D+L I AG IVYC + V
Sbjct: 195 LLELHEPLVHVSSFDRPNIRY---TLVEKYKPLDQLWFFIKGQKGKAG--IVYCNSRSKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
EE ++ L++ G+ YH + + RE F++D ++V+VAT+AFGMGI+K +VR V
Sbjct: 250 EETTERLQKRGLSVAAYHAGLEAAQREWVQDAFLKDNLQVVVATVAFGMGINKSNVRFVA 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +E+YYQE+GR GRDG+ + L+Y ++ A E Q+ L
Sbjct: 310 HFDIPRNIEAYYQETGRAGRDGVEAEAILFYDPADMAWLRRCLEEKPAGMQQDIERHKLN 369
Query: 362 AAQRYCLLTTCRR 374
A + TCRR
Sbjct: 370 AIAAFAEAQTCRR 382
>gi|415831473|ref|ZP_11517190.1| ATP-dependent DNA helicase RecQ [Escherichia coli OK1357]
gi|417599262|ref|ZP_12249886.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3030-1]
gi|417669412|ref|ZP_12318948.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_O31]
gi|418943250|ref|ZP_13496459.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H43 str.
T22]
gi|419280425|ref|ZP_13822664.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10E]
gi|419347603|ref|ZP_13888969.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC13A]
gi|419352064|ref|ZP_13893390.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC13B]
gi|419357538|ref|ZP_13898783.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC13C]
gi|419362509|ref|ZP_13903714.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC13D]
gi|419367635|ref|ZP_13908783.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC13E]
gi|419372449|ref|ZP_13913555.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC14A]
gi|419377952|ref|ZP_13918966.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC14B]
gi|419383345|ref|ZP_13924284.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC14C]
gi|419388582|ref|ZP_13929446.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC14D]
gi|425424847|ref|ZP_18805992.1| ATP-dependent DNA helicase RecQ [Escherichia coli 0.1288]
gi|323182595|gb|EFZ67999.1| ATP-dependent DNA helicase RecQ [Escherichia coli OK1357]
gi|345348758|gb|EGW81051.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3030-1]
gi|375321441|gb|EHS67277.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H43 str.
T22]
gi|378124120|gb|EHW85532.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10E]
gi|378182454|gb|EHX43106.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC13A]
gi|378195639|gb|EHX56135.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC13C]
gi|378195725|gb|EHX56220.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC13B]
gi|378198136|gb|EHX58608.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC13D]
gi|378209534|gb|EHX69904.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC13E]
gi|378212157|gb|EHX72481.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC14A]
gi|378214771|gb|EHX75074.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC14B]
gi|378223929|gb|EHX84138.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC14C]
gi|378227658|gb|EHX87827.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC14D]
gi|397783043|gb|EJK93905.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_O31]
gi|408340410|gb|EKJ54905.1| ATP-dependent DNA helicase RecQ [Escherichia coli 0.1288]
Length = 609
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 224/374 (59%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQINSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|240949474|ref|ZP_04753814.1| ATP-dependent DNA helicase RecQ [Actinobacillus minor NM305]
gi|240296047|gb|EER46708.1| ATP-dependent DNA helicase RecQ [Actinobacillus minor NM305]
Length = 604
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 161/377 (42%), Positives = 221/377 (58%), Gaps = 14/377 (3%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ L FGY FR Q++VI+ ++ D LV+M TG GKSLCYQ+P L LV+SPL
Sbjct: 9 AILNNIFGYQQFRQGQQEVIEAVLNGLDTLVIMTTGGGKSLCYQVPALCIEGLTLVISPL 68
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLM+DQV L GI A ++ S QT V+ KA +G +LL+++PEK ++ F+
Sbjct: 69 ISLMKDQVDQLLTNGIEAGYINSTQTFEEQQHVEQKAISGQLKLLYLSPEK--VMTQGFF 126
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+ + L AVDEAHC+S+WGHDFR EY L LR+ VP +ALTATA R DI
Sbjct: 127 HFISHCKISLIAVDEAHCVSQWGHDFRPEYTLLGGLRSTFPNVPMMALTATADPTTRHDI 186
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSF--VDELVQEILKSVAGAGSIIVYCMT 237
I+ L+L+ P+ + SFDR N+ Y V+ + F +++L + I K +G IVYC +
Sbjct: 187 IHHLRLQEPHTYLGSFDRPNIRYTVQ-----EKFKPMEQLAKFIAKQQGKSG--IVYCNS 239
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K VEEI++ L GV YH M + RE F RD I+V+VAT+AFGMGI+K +V
Sbjct: 240 RKKVEEITEKLSARGVSVMGYHAGMTIQQRETVQNAFQRDNIQVVVATIAFGMGINKSNV 299
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R V H+ P+++ESYYQE+GR GRD + S L+Y +++A E QR
Sbjct: 300 RFVAHFDLPRSIESYYQETGRAGRDDLPSEAILFYDPADYAWLQKVLLEEPESEQRNIKQ 359
Query: 358 ESLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 360 HKLQAISAFAESQTCRR 376
>gi|229173465|ref|ZP_04301009.1| ATP-dependent DNA helicase RecQ [Bacillus cereus MM3]
gi|228610159|gb|EEK67437.1| ATP-dependent DNA helicase RecQ [Bacillus cereus MM3]
Length = 705
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 153/372 (41%), Positives = 225/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLIQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVREDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N+L + + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 NTLGINQENTIMTTFERENLSFTVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLMKAGVSVSKYHAGMSDTDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSACILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|441500281|ref|ZP_20982448.1| ATP-dependent DNA helicase RecQ [Fulvivirga imtechensis AK7]
gi|441435974|gb|ELR69351.1| ATP-dependent DNA helicase RecQ [Fulvivirga imtechensis AK7]
Length = 723
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 154/374 (41%), Positives = 223/374 (59%), Gaps = 9/374 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LKK+FGY FR QK++I I+E RD LV+M TG GKSLCYQ+P L+ +V+SPLI+
Sbjct: 13 LKKHFGYDSFRHQQKEIIHHILEGRDALVLMPTGGGKSLCYQVPALIFEGVTIVISPLIA 72
Query: 65 LMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L+ GI+A +L S+ Q + V +LL++ PE+ F +
Sbjct: 73 LMKDQVDALRLNGISAAYLNSSLSQQEQAEVMRLLRDNRLKLLYLAPERLVSGDKGFINF 132
Query: 122 LL-KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L +A + + A+DEAHCIS+WGHDFR EY QL L++ VP VALTATA + + DI+
Sbjct: 133 LKDQAKLSMIAIDEAHCISQWGHDFRPEYTQLATLKSVFPEVPVVALTATADKLTQDDIL 192
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
LKL NP ++SF+R+N++Y V R D+L+Q + K G I+Y ++
Sbjct: 193 QQLKLHNPKKFVSSFNRENIYYFVSPKRRS---YDQLLQFLNKHKDDTG--IIYTLSRAS 247
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
E +++ L G A YH + R++ LFI+D+I+++ AT+AFGMGIDK +VR V
Sbjct: 248 AESLAEQLIADGYDARPYHAGLDRDVRDKHQDLFIKDQIKIITATIAFGMGIDKSNVRFV 307
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H PK +E YYQE+GR GRDG+ S L+Y+ ++ K + Q +++ L
Sbjct: 308 VHMDLPKNIEGYYQETGRAGRDGLKSEALLFYSYADVKKLKSFVEVEGNTQQSEIMLKKL 367
Query: 361 LAAQRYCLLTTCRR 374
Y L TCRR
Sbjct: 368 NEMAEYGELRTCRR 381
>gi|194438627|ref|ZP_03070715.1| ATP-dependent DNA helicase RecQ [Escherichia coli 101-1]
gi|253775552|ref|YP_003038383.1| ATP-dependent DNA helicase RecQ [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254163767|ref|YP_003046875.1| ATP-dependent DNA helicase RecQ [Escherichia coli B str. REL606]
gi|254290517|ref|YP_003056265.1| ATP-dependent DNA helicase [Escherichia coli BL21(DE3)]
gi|300930009|ref|ZP_07145442.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 187-1]
gi|422789266|ref|ZP_16841997.1| ATP-dependent DNA helicase RecQ [Escherichia coli H489]
gi|422794104|ref|ZP_16846795.1| ATP-dependent DNA helicase RecQ [Escherichia coli TA007]
gi|442596884|ref|ZP_21014685.1| ATP-dependent DNA helicase RecQ [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
gi|194422431|gb|EDX38430.1| ATP-dependent DNA helicase RecQ [Escherichia coli 101-1]
gi|253326596|gb|ACT31198.1| ATP-dependent DNA helicase, RecQ family [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253975668|gb|ACT41339.1| ATP-dependent DNA helicase [Escherichia coli B str. REL606]
gi|253979824|gb|ACT45494.1| ATP-dependent DNA helicase [Escherichia coli BL21(DE3)]
gi|300462099|gb|EFK25592.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 187-1]
gi|323959079|gb|EGB54748.1| ATP-dependent DNA helicase RecQ [Escherichia coli H489]
gi|323969335|gb|EGB64634.1| ATP-dependent DNA helicase RecQ [Escherichia coli TA007]
gi|441654632|emb|CCQ00598.1| ATP-dependent DNA helicase RecQ [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
Length = 611
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSKGISAAAYHAGLENNIRVDVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|288937759|ref|YP_003441818.1| ATP-dependent DNA helicase RecQ [Klebsiella variicola At-22]
gi|288892468|gb|ADC60786.1| ATP-dependent DNA helicase RecQ [Klebsiella variicola At-22]
Length = 608
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 144/337 (42%), Positives = 213/337 (63%), Gaps = 10/337 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+ +I+ ++E RDCLVVM TG GKSLCYQ+P LV G +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQETIIETVLEGRDCLVVMPTGGGKSLCYQVPALVMGGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S Q+ V +G +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLLANGVAAACLNSTQSREQQQEVMAGCRSGQVRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +LR + +PF+ALTATA + R DI+
Sbjct: 135 LANWNLAMLAVDEAHCISQWGHDFRPEYAALGQLRQRMPKIPFMALTATADDTTRRDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + ++SFDR N+ Y ++ +D+L++ + +G I+YC + V
Sbjct: 195 LLGLNDPLIQVSSFDRPNIRY---MLMEKFKPLDQLMRYVQDQRGKSG--IIYCNSRSKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSRGISAAAYHAGLENAVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346
>gi|388455906|ref|ZP_10138201.1| ATP-dependent DNA helicase RecQ [Fluoribacter dumoffii Tex-KL]
Length = 607
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 157/376 (41%), Positives = 227/376 (60%), Gaps = 11/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
++ LK+YFG+ FR Q+D+I +IE +D LV+M TG GKSLCYQ+P +V T +VVSP
Sbjct: 15 LAVLKEYFGFDSFRTPQEDIINEVIEGKDVLVLMPTGGGKSLCYQIPAIVRPGTGIVVSP 74
Query: 62 LISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LI+LM+DQV +L+ +GI A + S+ + V + LL++ PE+ ++ SF
Sbjct: 75 LIALMEDQVTALRLQGIRAAYYNSSLSGEESKKVLMQLHHNELDLLYIAPER--LMSPSF 132
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+L + + LFA+DEAHCIS+WGHDFR EY L L+T +P +ALTATA ++ R D
Sbjct: 133 LERLKECHIALFAIDEAHCISQWGHDFRPEYAALGVLKTHFPNIPIIALTATADKQTRQD 192
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
II+ L P IASF+R N+ Y KV+++ + V +L Q L +V II YC T
Sbjct: 193 IIDKLHY-TPRKYIASFNRPNIHY--KVVHKTNA-VKQLGQ-FLHTVERQSGII-YCSTR 246
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE +++ L+++ KA YH + K R E LF D I ++VAT+AFGMGIDK +VR
Sbjct: 247 TAVETLAQKLQEMDFKARAYHAGLPHKERREVQGLFRHDRIDIVVATIAFGMGIDKSNVR 306
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+HY PK +E YYQE+GR GRDG+ + L Y ++ A+ + + + QR +
Sbjct: 307 FVVHYDLPKNIEGYYQETGRAGRDGLPAQALLLYDAADSARLRSWIHNNPLDEQRRVEIN 366
Query: 359 SLLAAQRYCLLTTCRR 374
L + + CRR
Sbjct: 367 KLNHMLAFAEASHCRR 382
>gi|387131108|ref|YP_006293998.1| ATP-dependent DNA helicase RecQ [Methylophaga sp. JAM7]
gi|386272397|gb|AFJ03311.1| ATP-dependent DNA helicase RecQ [Methylophaga sp. JAM7]
Length = 708
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 155/374 (41%), Positives = 222/374 (59%), Gaps = 10/374 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FR Q +++++I D LV+M TG GKSLCYQ+P LV TA+VVSPLI+
Sbjct: 12 LQNVFGYDQFRHNQAAIVEQVINGGDALVLMPTGGGKSLCYQIPALVRPGTAVVVSPLIA 71
Query: 65 LMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV++L++ GI A FL S+ ++V+ + E G LL++ PE+ ++ S
Sbjct: 72 LMQDQVVALQELGIQAAFLNSSLSINEMNAVEFQLEAGEIDLLYVAPER--LLSPRMLSL 129
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + LFA+DEAHC+S+WGHDFR EY+QL L +P +ALTATA ++ R +II
Sbjct: 130 LDRLTISLFAIDEAHCVSQWGHDFRPEYQQLRILHERFPRIPRIALTATADKRTRGEIIE 189
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L+ V + SFDR N+FY + + + + + ++ + AG IVYC++ K V
Sbjct: 190 QLNLQQAEVYLNSFDRNNIFYSIAEARQARQQLWQFIESQHANDAG----IVYCLSRKKV 245
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E + L+Q G A YH + ++ R + F+R+E ++VAT+AFGMGIDKPDVR V
Sbjct: 246 EATADWLQQQGRTALPYHAGLSAELRAHTQQRFLREEGVIIVATIAFGMGIDKPDVRFVA 305
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN-FAKGDFYCGESQTENQRTAIMESL 360
H PK +E+YYQE+GR GRDG+ + W+ Y + F E + L
Sbjct: 306 HLNLPKNIEAYYQETGRAGRDGLPANAWMAYGLQDVITLRQFMQDSDAPEMVKRVEHHKL 365
Query: 361 LAAQRYCLLTTCRR 374
A C L TCRR
Sbjct: 366 EAMLGLCELITCRR 379
>gi|359446850|ref|ZP_09236489.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20439]
gi|358039322|dbj|GAA72738.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20439]
Length = 607
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 149/375 (39%), Positives = 228/375 (60%), Gaps = 10/375 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ LK+ FGYS FR Q VI I +D LV++ TG GKS+CYQ+P LV +V+SPL
Sbjct: 17 TVLKQVFGYSEFRDGQSAVIDAAINGQDSLVLLPTGGGKSVCYQIPALVLEGVTIVISPL 76
Query: 63 ISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLMQDQV L+ G+ A ++ ++ + V + G +LL++ PEK ++ F
Sbjct: 77 ISLMQDQVTQLQALGVKAAYINNSLAREEQQLVYQQLHQGLIKLLYVAPEK--VLQREFL 134
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L V LFA+DEAHC+S WGHDFR Y +L++L+ VP +ALTATA + R DI
Sbjct: 135 ERLSHLNVSLFAIDEAHCVSHWGHDFRPHYFRLNELKQRFTHVPMMALTATADKATRFDI 194
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+ LKL+ PY+ SFDR N+ Y ++ + + V +L++ + + +G I+YC + K
Sbjct: 195 VEQLKLQQPYIHTGSFDRPNIRYTIE--EKFKPMV-QLLRYLKEQKNQSG--IIYCTSRK 249
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V++I++ L G+ A YH M ++ R+ F RD+I+++VAT+AFGMGI+KP+VR
Sbjct: 250 RVDDIAEKLADAGLNAAAYHAGMSNEQRQFVQTGFARDDIQIVVATVAFGMGINKPNVRF 309
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V+HY PK++E+YYQE+GR GRDG+A+ +Y+ ++ + + + E +R +
Sbjct: 310 VLHYDIPKSIEAYYQETGRAGRDGLAAEAIMYFDPADIGRVRRFFEDIDDEQRRRVEEQR 369
Query: 360 LLAAQRYCLLTTCRR 374
A + TCRR
Sbjct: 370 FNAMASFAEAQTCRR 384
>gi|312971887|ref|ZP_07786061.1| ATP-dependent DNA helicase RecQ [Escherichia coli 1827-70]
gi|310334264|gb|EFQ00469.1| ATP-dependent DNA helicase RecQ [Escherichia coli 1827-70]
Length = 609
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 223/374 (59%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQDTFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + G I+YC + V
Sbjct: 195 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKPG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|419765474|ref|ZP_14291711.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
gi|397741738|gb|EJK88959.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
Length = 608
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 145/337 (43%), Positives = 212/337 (62%), Gaps = 10/337 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+ +I+ +E RDCLVVM TG GKSLCYQ+P LV G +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQETIIETALEGRDCLVVMPTGGGKSLCYQVPALVMGGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S Q+ V +G +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLLANGVAAACLNSTQSREQQQEVMAGCRSGQVRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +LR + +PF+ALTATA + R DI+
Sbjct: 135 LANWNLAMLAVDEAHCISQWGHDFRPEYAALGQLRQRMPQIPFMALTATADDTTRRDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + ++SFDR N+ Y ++ +D+L++ + +G I+YC + V
Sbjct: 195 LLGLNDPLIQVSSFDRPNIRY---MLMEKFKPLDQLMRYVQDQRGKSG--IIYCNSRSKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R E F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSRGISAAAYHAGLENDVRAEVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346
>gi|420338400|ref|ZP_14839955.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-315]
gi|391258280|gb|EIQ17384.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-315]
Length = 609
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 224/374 (59%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q ++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQGEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|145637733|ref|ZP_01793385.1| organic solvent tolerance protein [Haemophilus influenzae PittHH]
gi|145269082|gb|EDK09033.1| organic solvent tolerance protein [Haemophilus influenzae PittHH]
Length = 619
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 160/376 (42%), Positives = 223/376 (59%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+S LK FGY FR Q++VI + +D LVVMATG+GKSLCYQ+P L LV+SP
Sbjct: 17 LSVLKSVFGYQSFRKGQEEVINATLNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISP 76
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ GI A+FL S+QT VQ K +G +LL+++PEK ++ SF
Sbjct: 77 LISLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEK--VMTNSF 134
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + + VC A+DEAHCIS+WGHDFR EY QL L+ P +ALTATA + D
Sbjct: 135 FQLISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATADYATQQD 194
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L LKN + I SFDR N+ Y + +++L + +L +G I+YC +
Sbjct: 195 ILRHLNLKNLHKYIGSFDRPNIRY---TLEEKYKPMEQLTRFVLAQKGKSG--IIYCNSR 249
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I+++L+ GV A YH M + RE + F RD ++V+VAT+AFGMGI+K +VR
Sbjct: 250 NKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFGMGINKSNVR 309
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V H+ P+++ESYYQE+GR GRD + + L+Y +++ E QR
Sbjct: 310 FVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYTWLQKILFEKPETPQRQIEQH 369
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 370 KLEAIGEFAESQTCRR 385
>gi|422831064|ref|ZP_16879214.1| ATP-dependent DNA helicase recQ [Escherichia coli B093]
gi|371602955|gb|EHN91637.1| ATP-dependent DNA helicase recQ [Escherichia coli B093]
Length = 611
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQQLDVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSKGISAAAYHAGLENNIRVDVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|206973530|ref|ZP_03234448.1| ATP-dependent DNA helicase RecQ [Bacillus cereus H3081.97]
gi|206747686|gb|EDZ59075.1| ATP-dependent DNA helicase RecQ [Bacillus cereus H3081.97]
Length = 705
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 152/372 (40%), Positives = 224/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + + G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISITEANQRIQLVKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N+L + + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 NTLGINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYENLMKAGVSVSKYHAGMSDNDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSACILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|206578880|ref|YP_002241119.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae 342]
gi|206567938|gb|ACI09714.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae 342]
Length = 608
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 144/337 (42%), Positives = 213/337 (63%), Gaps = 10/337 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+ +I+ ++E RDCLVVM TG GKSLCYQ+P LV G +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQETIIETVLEGRDCLVVMPTGGGKSLCYQVPALVMGGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S Q+ V +G +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLLANGVAAACLNSTQSREQQQEVMAGCRSGQVRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +LR + +PF+ALTATA + R DI+
Sbjct: 135 LANWNLAMLAVDEAHCISQWGHDFRPEYAALGQLRQRMPQIPFMALTATADDTTRRDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + ++SFDR N+ Y ++ +D+L++ + +G I+YC + V
Sbjct: 195 LLGLNDPLIQVSSFDRPNIRY---MLMEKFKPLDQLMRYVQDQRGKSG--IIYCNSRSKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSRGISAAAYHAGLENAVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346
>gi|114778864|ref|ZP_01453663.1| ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQ
[Mariprofundus ferrooxydans PV-1]
gi|114550899|gb|EAU53464.1| ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQ
[Mariprofundus ferrooxydans PV-1]
Length = 724
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 157/380 (41%), Positives = 228/380 (60%), Gaps = 24/380 (6%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK FGY +FRP Q+++I +++ +D V+M TG GKS+CYQ+P ++ T +VVSPLIS
Sbjct: 16 LKDIFGYDMFRPMQEEIICNLLDGKDAFVLMPTGGGKSICYQIPAIMREGTGIVVSPLIS 75
Query: 65 LMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L G+ A + S A V + E G LL++ PE+ ++ SF +K
Sbjct: 76 LMKDQVDALTACGVKAAYYNSSLKAAEAKDVLERFEAGELDLLYVAPER--LLSKSFLTK 133
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L K + +FA+DEAHC+S+WGHDFR EY +L +LR VP +ALTATA E R DI +
Sbjct: 134 LEKLKLSMFAIDEAHCVSQWGHDFRPEYVRLGELREIFPDVPMLALTATADEHTREDISD 193
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG--AGSIIVYCMTIK 239
L+L +ASFDR N+ Y V + Q +IL+ + G S ++YC++ K
Sbjct: 194 RLQLGKAKRFVASFDRPNIRY--LVAEKRQPLT-----QILQFLDGWPNASGVIYCLSRK 246
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
VE+++ L++ G++A YH + ++RE F+RD ++V+VAT+AFGMG+DKP+VR
Sbjct: 247 RVEDLAVNLQRHGIRAAAYHAGIPGRSRERVQDDFLRDRVKVIVATIAFGMGVDKPNVRF 306
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTEN-----QRT 354
VIH+ PK++ESYYQE+GR GRDG+ S + Y GD EN QR
Sbjct: 307 VIHHDLPKSIESYYQETGRAGRDGLESEALMLY-----GSGDVNLVRRLIENVDNIDQRR 361
Query: 355 AIMESLLAAQRYCLLTTCRR 374
+ L + + TCRR
Sbjct: 362 VEVHKLNSMVAFSEALTCRR 381
>gi|359299526|ref|ZP_09185365.1| ATP-dependent DNA helicase RecQ [Haemophilus [parainfluenzae] CCUG
13788]
gi|402304439|ref|ZP_10823509.1| ATP-dependent DNA helicase RecQ [Haemophilus sputorum HK 2154]
gi|400378027|gb|EJP30892.1| ATP-dependent DNA helicase RecQ [Haemophilus sputorum HK 2154]
Length = 601
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 157/377 (41%), Positives = 221/377 (58%), Gaps = 14/377 (3%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ L+ FGY FR Q++VI ++ RDCLV+M TG GKSLCYQ+P L LV+SPL
Sbjct: 9 TVLQNVFGYQQFRQGQQEVIDAVLAGRDCLVIMTTGGGKSLCYQVPALCLEGITLVISPL 68
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLM+DQV L GI A +L S QT +V+ KA +G +LL+++PEK ++ F+
Sbjct: 69 ISLMKDQVDQLLTNGIEAAYLNSTQTQEEQQAVEQKALSGQLKLLYLSPEK--VMTQGFF 126
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+ V AVDEAHC+S+WGHDFR EY L LR +P +ALTATA R DI
Sbjct: 127 RLVSYCKVSFIAVDEAHCVSQWGHDFRPEYTLLGNLRKTFPNIPLMALTATADPTTRADI 186
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSF--VDELVQEILKSVAGAGSIIVYCMT 237
++ L+L +P+ + SFDR N+ Y V+ + F +++L + I +G IVYC +
Sbjct: 187 LHHLRLNDPHTYLGSFDRPNIRYTVQ-----EKFKPMEQLAKFINAQKGKSG--IVYCNS 239
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K VEEI++ L + YH M + RE F RD ++V+VAT+AFGMGI+K +V
Sbjct: 240 RKKVEEITEKLSARHISVMGYHAGMSVQQRETVQNAFQRDNVQVVVATIAFGMGINKSNV 299
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R V+H+ P+++ESYYQE+GR GRD + S ++Y +++A E QR
Sbjct: 300 RFVVHFDLPRSIESYYQETGRAGRDDLPSEAVMFYDPADYAWLQKILLEEPESEQRDIKQ 359
Query: 358 ESLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 360 HKLQAIGAFAESQTCRR 376
>gi|251787081|ref|YP_003001385.1| ATP-dependent DNA helicase [Escherichia coli BL21(DE3)]
gi|242379354|emb|CAQ34167.1| ATP-dependent DNA helicase [Escherichia coli BL21(DE3)]
Length = 609
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENNIRVDVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|124004539|ref|ZP_01689384.1| ATP-dependent DNA helicase RecQ [Microscilla marina ATCC 23134]
gi|123990111|gb|EAY29625.1| ATP-dependent DNA helicase RecQ [Microscilla marina ATCC 23134]
Length = 728
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 158/376 (42%), Positives = 235/376 (62%), Gaps = 17/376 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK+ FGY FR Q+++I+ I+ +++ V+M TG+GKSLCYQLP +V+ +A+V+SPLI+
Sbjct: 13 LKEVFGYGQFRGAQQEIIKSILGEKNTFVIMPTGAGKSLCYQLPAIVSPGSAIVISPLIA 72
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTD---SSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM++QV L GINA+FL S T + V+ G +LL++ PE + S
Sbjct: 73 LMKNQVDQLNALGINAQFLNSTLTKGEITRVKKDVLNGEVKLLYVAPE--SLTKESNVDF 130
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L KA + A+DEAHCISEWGHDFR EY+++ ++ L +P +ALTATAT KV+ DI
Sbjct: 131 LKKAQISFVAIDEAHCISEWGHDFRPEYRKIRQIIDNLGNLPIIALTATATPKVQQDIQR 190
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
+L++++ V +SF+R NL+Y V R + V + + + LK+ G II YC++ K V
Sbjct: 191 NLQMEDASVFKSSFNRPNLYYEV----RPKIHVKKQLIKYLKNKKGESGII-YCLSRKKV 245
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
EEI + LK +KA YH + S R F+ ++ ++VAT+AFGMGIDKPDVR VI
Sbjct: 246 EEIYEFLKVNDIKALPYHAGLDSSVRMRNQDAFLNEDADIIVATIAFGMGIDKPDVRCVI 305
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGE---SQTENQRTAIME 358
HY PK+LE YYQE+GR GRDG+ + C ++Y+ ++ K + + + ++ +N R + E
Sbjct: 306 HYDAPKSLEGYYQETGRAGRDGLNADCIMFYSPNDIQKLEKFNKDKPVTERDNARHLLQE 365
Query: 359 SLLAAQRYCLLTTCRR 374
+ Y CRR
Sbjct: 366 MM----DYATSGVCRR 377
>gi|194429200|ref|ZP_03061728.1| ATP-dependent DNA helicase RecQ [Escherichia coli B171]
gi|300923326|ref|ZP_07139374.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 182-1]
gi|194412712|gb|EDX29006.1| ATP-dependent DNA helicase RecQ [Escherichia coli B171]
gi|300420412|gb|EFK03723.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 182-1]
Length = 611
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSKGISAVAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|425078981|ref|ZP_18482083.1| ATP-dependent DNA helicase recQ [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|425084628|ref|ZP_18487721.1| ATP-dependent DNA helicase recQ [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|405589261|gb|EKB62831.1| ATP-dependent DNA helicase recQ [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|405608866|gb|EKB81789.1| ATP-dependent DNA helicase recQ [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
Length = 608
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 145/337 (43%), Positives = 212/337 (62%), Gaps = 10/337 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+ +I+ +E RDCLVVM TG GKSLCYQ+P LV G +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQETIIETALEGRDCLVVMPTGGGKSLCYQVPALVMGGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S Q+ V +G +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLLANGVAAACLNSTQSREQQQEVMAGCRSGQVRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +LR + +PF+ALTATA + R DI+
Sbjct: 135 LANWNLAMLAVDEAHCISQWGHDFRPEYAALGQLRQRIPQIPFMALTATADDTTRRDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + ++SFDR N+ Y ++ +D+L++ + +G I+YC + V
Sbjct: 195 LLGLNDPLIQVSSFDRPNIRY---MLMEKFKPLDQLMRYVQDQRGKSG--IIYCNSRSKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R E F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSRGISAAAYHAGLENDVRAEVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346
>gi|383311275|ref|YP_005364085.1| ATP-dependent DNA helicase recQ [Pasteurella multocida subsp.
multocida str. HN06]
gi|386835294|ref|YP_006240611.1| ATP-dependent DNA helicase RecQ [Pasteurella multocida subsp.
multocida str. 3480]
gi|380872547|gb|AFF24914.1| ATP-dependent DNA helicase recQ [Pasteurella multocida subsp.
multocida str. HN06]
gi|385201997|gb|AFI46852.1| ATP-dependent DNA helicase RecQ [Pasteurella multocida subsp.
multocida str. 3480]
Length = 632
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 157/376 (41%), Positives = 227/376 (60%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L FGY FR Q++VI + +D LV+MATG+GKSLCYQ+P L LV+SP
Sbjct: 27 LDVLHAVFGYQSFRKGQEEVIDATLMGKDSLVIMATGNGKSLCYQIPALCFEGLTLVISP 86
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L GI A++L S+QT VQ K +G +LL+++PEK ++ SF
Sbjct: 87 LISLMKDQVDQLLANGIEADYLNSSQTFTEQQQVQNKLMSGTLKLLYVSPEK--VMTTSF 144
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + V A+DEAHCIS+WGHDFR EY QL L++ P +ALTATA R D
Sbjct: 145 FHLISHCKVSFVAIDEAHCISQWGHDFRPEYTQLGGLKSCFPYAPIMALTATADHATRQD 204
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L L++P+V I SFDR N+ Y ++ + + +++L + +L +G I+YC +
Sbjct: 205 ILRHLNLQSPHVYIGSFDRPNIRY--TLVEKFKP-MEQLCRFVLGQKGKSG--IIYCNSR 259
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I+++L+ GV A YH + + RE+ R F RD ++V+VAT+AFGMGI+K +VR
Sbjct: 260 SKVERIAESLRNKGVSAQAYHAGLETAQREQVQRAFQRDNVQVVVATIAFGMGINKSNVR 319
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+H+ P+++ESYYQE+GR GRD + + L+Y +++A E QR
Sbjct: 320 FVVHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLHKILLEKPESPQRQIEAL 379
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 380 KLQAIGEFAESQTCRR 395
>gi|423611203|ref|ZP_17587064.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD107]
gi|401248656|gb|EJR54978.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD107]
Length = 705
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 154/373 (41%), Positives = 227/373 (60%), Gaps = 13/373 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGS----AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
LM+DQV +L Q GI+A ++ S A+ + +Q A+ G+++LL++ PE+ + + F
Sbjct: 69 LMKDQVDTLIQNGISATYINSSISIAEANQRIQL-AKQGHYKLLYVAPER--LDSMEFVD 125
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDI 179
+L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 126 QLMDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDI 185
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
++L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 186 CSTLEINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRK 240
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+
Sbjct: 241 VVDQLYEDLGKAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRY 300
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E
Sbjct: 301 VIHYQLPKNMESYYQEAGRAGRDGLDSECILLYSSQDVQVQRFLIDQSTGESRFSNELEK 360
Query: 360 LLAAQRYCLLTTC 372
L YC C
Sbjct: 361 LQNMTDYCHTEQC 373
>gi|297851930|ref|XP_002893846.1| RECQL2 [Arabidopsis lyrata subsp. lyrata]
gi|297339688|gb|EFH70105.1| RECQL2 [Arabidopsis lyrata subsp. lyrata]
Length = 704
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 167/380 (43%), Positives = 233/380 (61%), Gaps = 24/380 (6%)
Query: 9 FGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQD 68
FG S +R QK++I I+ RD LV+MA G GKSLCYQLP ++ G T LVVSPL+SL+QD
Sbjct: 84 FGISKYRANQKEIINAIMAGRDVLVIMAAGGGKSLCYQLPAILRGGTTLVVSPLLSLIQD 143
Query: 69 QVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQL--LFMTPEKACIIPISFWSKLL 123
QVM L GI+A L S + + V E G L L++TPEK F SKL
Sbjct: 144 QVMGLAALGISAYMLTSTSGKENEKFVYKALEKGEHDLKILYVTPEKVSKSK-RFMSKLE 202
Query: 124 K---AG-VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
K AG + L ++DEAHC S+WGHDFR +YK L L+T VP VALTATAT+KV+ D+
Sbjct: 203 KCHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSILKTQFPKVPMVALTATATQKVQNDL 262
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINR-GQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I L + ++S +R NLFY V+ + G+ VDE+ + I +S + S IVYC +
Sbjct: 263 IEMLHIPKCVKFVSSVNRPNLFYSVREKSAVGKVVVDEIAEFIRESYSNNESGIVYCFSR 322
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K+ E+I+ L++ G+ A YH M + RE+ H + +++++V+V T+AFGMGI+KPDVR
Sbjct: 323 KECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 382
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD---FYCGESQTENQRTA 355
VIH+ K++E+YYQESGR GRDG+ S C L++ ++ + FY +
Sbjct: 383 FVIHHSLSKSMETYYQESGRAGRDGLPSECILFFRSADVPRQSSMVFY---------EYS 433
Query: 356 IMESLLAAQRYCL-LTTCRR 374
+++L RYC T CRR
Sbjct: 434 GLQNLYDIVRYCQSKTKCRR 453
>gi|30262788|ref|NP_845165.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. Ames]
gi|47528112|ref|YP_019461.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. 'Ames
Ancestor']
gi|49185634|ref|YP_028886.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. Sterne]
gi|65320112|ref|ZP_00393071.1| COG0514: Superfamily II DNA helicase [Bacillus anthracis str.
A2012]
gi|170704762|ref|ZP_02895228.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0389]
gi|229603340|ref|YP_002867093.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0248]
gi|30257420|gb|AAP26651.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. Ames]
gi|47503260|gb|AAT31936.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. 'Ames
Ancestor']
gi|49179561|gb|AAT54937.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. Sterne]
gi|170130563|gb|EDS99424.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0389]
gi|229267748|gb|ACQ49385.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0248]
Length = 705
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 153/372 (41%), Positives = 224/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++L ++ PE+ + + F +
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLFYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEEPLVLALTATATPQVRDDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N+L + + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 NTLGINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLMKAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L YA + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSACILLYASQDVQVQRFLIDQSIGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|415799701|ref|ZP_11498958.1| ATP-dependent DNA helicase RecQ [Escherichia coli E128010]
gi|419319320|ref|ZP_13861114.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC12A]
gi|419325342|ref|ZP_13867026.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC12B]
gi|419331540|ref|ZP_13873131.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC12C]
gi|419336784|ref|ZP_13878296.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC12D]
gi|419342409|ref|ZP_13883861.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC12E]
gi|420393960|ref|ZP_14893204.1| ATP-dependent DNA helicase RecQ [Escherichia coli EPEC C342-62]
gi|323161113|gb|EFZ47031.1| ATP-dependent DNA helicase RecQ [Escherichia coli E128010]
gi|378161445|gb|EHX22422.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC12B]
gi|378164595|gb|EHX25537.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC12A]
gi|378165464|gb|EHX26398.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC12C]
gi|378179327|gb|EHX40057.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC12D]
gi|378182541|gb|EHX43192.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC12E]
gi|391310039|gb|EIQ67702.1| ATP-dependent DNA helicase RecQ [Escherichia coli EPEC C342-62]
Length = 609
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSKGISAVAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|288940303|ref|YP_003442543.1| ATP-dependent DNA helicase RecQ [Allochromatium vinosum DSM 180]
gi|288895675|gb|ADC61511.1| ATP-dependent DNA helicase RecQ [Allochromatium vinosum DSM 180]
Length = 620
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 161/375 (42%), Positives = 224/375 (59%), Gaps = 12/375 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L + FGY FR Q ++I+ +I D LV+M TG GKSLCYQ+P L+ TA+VVSPLI+
Sbjct: 9 LSRIFGYDRFRGAQAEIIEHLIGGGDALVLMPTGGGKSLCYQIPALIRPGTAIVVSPLIA 68
Query: 65 LMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV +L+Q G+ A FL S+ +V+ G LL++ PE+ ++ S
Sbjct: 69 LMQDQVEALRQLGVRAAFLNSSLDLDEARAVERALRNGTLDLLYVAPER--LLTERCLSL 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + LFA+DEAHC+S+WGHDFR EY QL++L VP +ALTATA R +I+
Sbjct: 127 LDSIEIALFAIDEAHCVSQWGHDFRPEYIQLEQLHARWPQVPRIALTATADAPTRNEIVA 186
Query: 182 SLKLKNPYVTIASFDRKNLFYG-VKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L+L++ ++SFDR N+ Y V+ N + +D L +E +S IVYC++ +
Sbjct: 187 RLRLESARRFVSSFDRPNIRYRIVEKTNPRRQLLDFLRREHPESAG-----IVYCLSRRR 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VEE + L+ G +A YH + S+ R E F+R++ +MVAT+AFGMGIDKPDVR V
Sbjct: 242 VEETAVYLESEGFRALPYHAGLPSEMRREHQARFLREDGLIMVATIAFGMGIDKPDVRFV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI-MES 359
H PK+LESYYQE+GR GRDG+ + W+ Y S+ ES+ E + I +
Sbjct: 302 AHLDLPKSLESYYQETGRAGRDGLPADAWMAYGLSDLVTLRRLIEESEAEERFKRIELHK 361
Query: 360 LLAAQRYCLLTTCRR 374
L A C T CRR
Sbjct: 362 LDAMLGLCETTNCRR 376
>gi|418259306|ref|ZP_12882257.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 6603-63]
gi|397894450|gb|EJL10892.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 6603-63]
Length = 609
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 155/374 (41%), Positives = 224/374 (59%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCL VM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIIDTVLSGRDCLAVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSRGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|418754491|ref|ZP_13310717.1| ATP-dependent DNA helicase, RecQ family [Leptospira santarosai str.
MOR084]
gi|409965211|gb|EKO33082.1| ATP-dependent DNA helicase, RecQ family [Leptospira santarosai str.
MOR084]
Length = 621
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 161/382 (42%), Positives = 233/382 (60%), Gaps = 13/382 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKT-ALVV 59
+ S+LK+ +G S FR QK+ I+ ++ +D LV++ TG GKSL YQLP ++ G + LV+
Sbjct: 12 LESSLKEIWGMSRFRTGQKESIESVLNGKDTLVILPTGGGKSLVYQLPAVLEGSSLTLVI 71
Query: 60 SPLISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPI 116
SPLI+LM+DQV SLK +GI AE+ S Q D + ++A TG ++L+++PEKA +
Sbjct: 72 SPLIALMKDQVDSLKAKGIAAEYCNSTQDDLEQLRILSRAATGKIRILYLSPEKA--LSR 129
Query: 117 SFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR-TFLLGVPFVALTATATEKV 175
+ L K + AVDEAHC+S+WGHDFR EY++L +LR + +P VALTATAT KV
Sbjct: 130 QVFEILPKLPLDRIAVDEAHCVSQWGHDFRPEYRKLHELRDKYKRPIPIVALTATATPKV 189
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILK---SVAGAGSII 232
DI +SL LK+P + SF RKNL + V+ S +EL++ +++ G I
Sbjct: 190 IQDISDSLGLKDPTLIKGSFYRKNLRFSVRFPQNETSKENELLKLLIRGNFQKTENGKAI 249
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
+YC T + VE I LK+ G K G YH +RE+ + + V+VAT AFGMG+
Sbjct: 250 IYCATRQKVESIYNFLKKNGFKVGKYHAGRTDSSREKTQNGYSIGKTNVLVATNAFGMGL 309
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ 352
D P+VR ++HY P +LESYYQE+GR GRDG +S C L+Y ++ +F G+ EN
Sbjct: 310 DNPNVRLIVHYQIPASLESYYQEAGRAGRDGKSSNCVLFYHPADLVTQNFIIGK---ENN 366
Query: 353 RTAIMESLLAAQRYCLLTTCRR 374
R + L + Y + CR+
Sbjct: 367 RKGGVTLLSFVKEYAISNGCRQ 388
>gi|116620087|ref|YP_822243.1| ATP-dependent DNA helicase RecQ [Candidatus Solibacter usitatus
Ellin6076]
gi|116223249|gb|ABJ81958.1| ATP-dependent DNA helicase, RecQ family [Candidatus Solibacter
usitatus Ellin6076]
Length = 602
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 219/375 (58%), Gaps = 10/375 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
S LK+Y+GY FRP Q+ +IQ ++ D VVM TG GKSLCYQLP L G+T +V+SPL
Sbjct: 6 SALKRYWGYDTFRPMQERIIQSLMGGADVAVVMPTGGGKSLCYQLPALALGQTVVVISPL 65
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFW 119
I+LMQDQV L G+ A + S+Q V A G F+L++++PE+ W
Sbjct: 66 IALMQDQVAQLADMGVPAALINSSQASDEQREVMRAATEGAFRLIYISPERLARQDTIGW 125
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
L + + FA+DEAHCISEWGH+FR EY+QL LR P A TA+AT++VR DI
Sbjct: 126 --LQRIPLAFFAIDEAHCISEWGHEFRPEYRQLSSLRENFPDHPIAAFTASATQRVRHDI 183
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINR-GQSFVDELVQEILKSVAGAGSIIVYCMTI 238
+ L+L+ P+ IASF R NL Y V +R + +L+ +++ G S+IVY TI
Sbjct: 184 LAQLRLRQPHKFIASFHRANLRY---VTHRCDKETHQQLLLAAMRAYEGE-SVIVYAPTI 239
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE+ L+ + A YHGQM + R ++ DE+RVMV T+AFG+GI+KP VR
Sbjct: 240 AAVEQTVDFLEGQRIAAVPYHGQMDNGIRRRNQERWMNDEVRVMVGTIAFGLGINKPAVR 299
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
VIH PK++E YYQE+GR GRDG+ + C + + + ++ + Q ++ E
Sbjct: 300 AVIHTSLPKSIEQYYQEAGRAGRDGLPADCVVLWQARDAGLLAYFINQLQDPVEKERGWE 359
Query: 359 SLLAAQRYCLLTTCR 373
+R+ CR
Sbjct: 360 RYRTIRRFVESADCR 374
>gi|315127615|ref|YP_004069618.1| ATP-dependent DNA helicase [Pseudoalteromonas sp. SM9913]
gi|315016129|gb|ADT69467.1| ATP-dependent DNA helicase [Pseudoalteromonas sp. SM9913]
Length = 607
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 149/375 (39%), Positives = 228/375 (60%), Gaps = 10/375 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ LK+ FGYS FR Q VI I +D LV++ TG GKS+CYQ+P LV +V+SPL
Sbjct: 17 TVLKQVFGYSEFRDGQSAVIDAAINGQDSLVLLPTGGGKSVCYQIPALVLEGVTIVISPL 76
Query: 63 ISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLMQDQV L+ G+ A ++ ++ + V + G +LL++ PEK ++ F
Sbjct: 77 ISLMQDQVTQLQALGVKAAYVNNSLAREEQQLVYQQLHQGLIKLLYVAPEK--VLQRDFL 134
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L V LFA+DEAHC+S WGHDFR Y +L++L+ VP +ALTATA + R DI
Sbjct: 135 ERLSHLNVSLFAIDEAHCVSHWGHDFRPHYFRLNELKQRFAHVPMMALTATADKATRFDI 194
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+ LKL+ PY+ SFDR N+ Y ++ + + V +L++ + + +G I+YC + K
Sbjct: 195 VEQLKLQQPYIHTGSFDRPNIRYTIE--EKFKPMV-QLLRYLKEQKNQSG--IIYCTSRK 249
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V++I++ L G+ A YH M ++ R+ F RD+I+++VAT+AFGMGI+KP+VR
Sbjct: 250 RVDDIAEKLADAGLNAAAYHAGMSNEQRQFVQTGFARDDIQIVVATVAFGMGINKPNVRF 309
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V+HY PK++E+YYQE+GR GRDG+A+ +Y+ ++ + + + E +R +
Sbjct: 310 VLHYDIPKSIEAYYQETGRAGRDGLAAEAIMYFDPADIGRVRRFFEDIDDEQRRRVEEQR 369
Query: 360 LLAAQRYCLLTTCRR 374
A + TCRR
Sbjct: 370 FNAMASFAEAQTCRR 384
>gi|170022156|ref|YP_001727110.1| ATP-dependent DNA helicase RecQ [Escherichia coli ATCC 8739]
gi|169757084|gb|ACA79783.1| ATP-dependent DNA helicase, RecQ family [Escherichia coli ATCC
8739]
Length = 609
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLIDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|432682606|ref|ZP_19917956.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE143]
gi|431216878|gb|ELF14470.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE143]
Length = 611
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 155/374 (41%), Positives = 224/374 (59%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKA 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|219870290|ref|YP_002474665.1| ATP-dependent DNA helicase RecQ, superfamily II [Haemophilus
parasuis SH0165]
gi|219690494|gb|ACL31717.1| ATP-dependent DNA helicase RecQ, superfamily II [Haemophilus
parasuis SH0165]
Length = 609
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 157/377 (41%), Positives = 222/377 (58%), Gaps = 14/377 (3%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ L FGY FR Q +VI+ I+ +DCLV+M TG GKSLCYQ+P L LV+SPL
Sbjct: 11 TVLHNVFGYQSFRQGQSEVIEAILSGKDCLVIMTTGGGKSLCYQVPALCFEGITLVISPL 70
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLM+DQV L G+ A ++ S QT +V+ KA +G +LL+++PEK ++ +F+
Sbjct: 71 ISLMKDQVDQLLTNGVEAGYINSTQTIEEQQAVEQKAISGQLKLLYLSPEK--VMTSNFF 128
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+ + L AVDEAHC+S+WGHDFR EY L LR +P VALTATA R DI
Sbjct: 129 QFISLCKISLIAVDEAHCVSQWGHDFRPEYTLLGGLRKTFPNIPLVALTATADPTTRFDI 188
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSF--VDELVQEILKSVAGAGSIIVYCMT 237
I+ LKL++P+ + SFDR N+ Y V+ + F VD+L++ I +G IVYC +
Sbjct: 189 IHHLKLEDPHTYLGSFDRPNIRYTVQ-----EKFKPVDQLIKFISSQQGKSG--IVYCNS 241
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K VEE+++ L YH M + RE F RD I+++VAT+AFGMGI+K +V
Sbjct: 242 RKKVEELTEKLSSHRFSVMGYHAGMTMQQRETVQNAFQRDNIQIVVATVAFGMGINKSNV 301
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R V+H+ P+++E+YYQE+GR GRD + + L+Y +++ E QR
Sbjct: 302 RFVVHFDLPRSIEAYYQETGRAGRDDLPAEAVLFYDPADYGWLHKVLLEKPESEQRQIEQ 361
Query: 358 ESLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 362 HKLQAIGAFAESQTCRR 378
>gi|283834583|ref|ZP_06354324.1| ATP-dependent DNA helicase RecQ [Citrobacter youngae ATCC 29220]
gi|291069712|gb|EFE07821.1| ATP-dependent DNA helicase RecQ [Citrobacter youngae ATCC 29220]
Length = 609
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 157/375 (41%), Positives = 223/375 (59%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLI
Sbjct: 16 VLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLI 75
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q+ V +G +LL++ PE+ ++ +F
Sbjct: 76 SLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRSGQVRLLYIAPER--LMLDNFLE 133
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PFVALTATA E R+DI+
Sbjct: 134 HLGHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFVALTATADETTRLDIV 193
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 194 RLLGLNEPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 248
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ AG YH + + R E F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 249 VEDTAARLQSRGISAGAYHAGLENSVRAEVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 308
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I
Sbjct: 309 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPAGQLLDIERHK 367
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 368 LNAMGAFAEAQTCRR 382
>gi|359437026|ref|ZP_09227101.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20311]
gi|358028285|dbj|GAA63350.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20311]
Length = 607
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 149/375 (39%), Positives = 228/375 (60%), Gaps = 10/375 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ LK+ FGYS FR Q VI I +D LV++ TG GKS+CYQ+P LV +V+SPL
Sbjct: 17 TVLKQVFGYSEFRDGQSAVIDAAINGQDSLVLLPTGGGKSVCYQIPALVLEGVTIVISPL 76
Query: 63 ISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLMQDQV L+ G+ A ++ ++ + V + G +LL++ PEK ++ F
Sbjct: 77 ISLMQDQVAQLQALGVKAAYINNSLAREERQLVYQQLHQGLIKLLYVAPEK--VLQHDFL 134
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L V LFA+DEAHC+S WGHDFR Y +L++L+ VP +ALTATA + R DI
Sbjct: 135 ERLSHLNVSLFAIDEAHCVSHWGHDFRPHYFRLNELKQRFAHVPMMALTATADKATRFDI 194
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+ LKL+ PY+ SFDR N+ Y ++ + + V +L++ + + +G I+YC + K
Sbjct: 195 VEQLKLQQPYIHTGSFDRPNIRYTIE--EKFKPMV-QLLRYLKEQKNQSG--IIYCTSRK 249
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V++I++ L G+ A YH M ++ R+ F RD+I+++VAT+AFGMGI+KP+VR
Sbjct: 250 RVDDIAEKLADAGLNAAAYHAGMSNEQRQFVQTGFARDDIQIVVATVAFGMGINKPNVRF 309
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V+HY PK++E+YYQE+GR GRDG+A+ +Y+ ++ + + + E +R +
Sbjct: 310 VLHYDIPKSIEAYYQETGRAGRDGLAAEAIMYFDPADIGRVRRFFEDIDDEQRRRVEEQR 369
Query: 360 LLAAQRYCLLTTCRR 374
A + TCRR
Sbjct: 370 FNAMASFAEAQTCRR 384
>gi|392981231|ref|YP_006479819.1| ATP-dependent DNA helicase RecQ [Enterobacter cloacae subsp.
dissolvens SDM]
gi|392327164|gb|AFM62117.1| ATP-dependent DNA helicase RecQ [Enterobacter cloacae subsp.
dissolvens SDM]
Length = 609
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 223/374 (59%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L + FGY FRP Q+ +I+ ++E RDCLVVM TG GKSLCYQ+P LV +VVSPLIS
Sbjct: 17 LHETFGYQQFRPGQETIIETVLEGRDCLVVMPTGGGKSLCYQVPALVLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S QT V TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLLANGVAAACLNSTQTREQQQEVMAGCRTGQIRLLYIAPER--LMLDNFLDH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R+DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPELPFMALTATADDTTRLDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + ++SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQVSSFDRPNIRY---MLMEKFKPLDQLLRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQNRGFSAAAYHAGLENHIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|295704335|ref|YP_003597410.1| ATP-dependent DNA helicase RecQ [Bacillus megaterium DSM 319]
gi|294801994|gb|ADF39060.1| ATP-dependent DNA helicase RecQ [Bacillus megaterium DSM 319]
Length = 711
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 157/377 (41%), Positives = 227/377 (60%), Gaps = 14/377 (3%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
++ L+ YFGY FR Q++ I+ ++E + +M TG GKSLCYQ+P L+ T LV+SP
Sbjct: 7 LTHLQSYFGYDSFRKGQEESIRYVLEGHNTACIMPTGGGKSLCYQIPSLLLEGTTLVISP 66
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIPISF 118
LISLM+DQV +L GI A ++ S+ T + VQ + E G ++LL++ PE+ + F
Sbjct: 67 LISLMKDQVDTLNAAGIPATYINSSLTHTEVQQRLEEVALGEYKLLYVAPER--LESPQF 124
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRI 177
+L + L AVDEAHCIS+WGHDFR Y ++++L + L P V LTATAT +VR
Sbjct: 125 LEQLQMLPIPLVAVDEAHCISQWGHDFRPSYLRINELISKLSNAPIVMGLTATATPQVRE 184
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI +L++ Y + F+R+NL + V +GQ + + Q I K+ AG I+Y T
Sbjct: 185 DICRALRINEEYTVMTGFERENLSFAVV---KGQDRISYIEQYIRKNDQEAG--IIYAAT 239
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
KDVEE+ L++ GV YH M + +R+E F++D+++VM+AT AFGMGIDK ++
Sbjct: 240 RKDVEELHARLQKSGVNVSKYHAGMSANSRDEEQNRFLQDDVQVMIATSAFGMGIDKSNI 299
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI- 356
R V+HY PK +ESYYQE+GR GRDG+ S C + Y+ + F E T N + I
Sbjct: 300 RFVLHYQLPKNMESYYQEAGRAGRDGLPSECIVLYSPQDIRVQRFLI-EQSTSNPKKQIQ 358
Query: 357 -MESLLAAQRYCLLTTC 372
+E L YC C
Sbjct: 359 DLEKLQNMVNYCHTEGC 375
>gi|395218411|ref|ZP_10402063.1| ATP-dependent DNA helicase RecQ [Pontibacter sp. BAB1700]
gi|394454486|gb|EJF09132.1| ATP-dependent DNA helicase RecQ [Pontibacter sp. BAB1700]
Length = 624
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 161/381 (42%), Positives = 230/381 (60%), Gaps = 25/381 (6%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
LK YFGY FRP Q+ +I I++++D +V+M TG GKS+CYQ+P +V +VVSPLI
Sbjct: 11 ALKLYFGYEQFRPMQEHIITNILQQKDVVVLMPTGGGKSVCYQVPAVVMPGLCVVVSPLI 70
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFWS 120
+LM+DQV +L GI A +L S+QT ++ K+ G +LL+++PEK ++ F+S
Sbjct: 71 ALMKDQVEALLANGIPAAYLNSSQTADEQYQIEEKSLAGQIKLLYVSPEK--LLSAGFFS 128
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L + V LFAVDEAHCIS WGHDFR EY QL L+ VP VALTATA + + DI
Sbjct: 129 FLKRLQVSLFAVDEAHCISAWGHDFRPEYTQLRALKQQFPAVPVVALTATADKLTQKDIQ 188
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L+L+ P V +ASFDR N+ ++ GQ+ +++ + + G I+YC++ K
Sbjct: 189 EQLQLRQPEVFVASFDRPNINL---MVLPGQNRFNKITDFLSRRHGQPG--IIYCLSRKA 243
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
E ++ L++ G A YH M ++ R +A F+RD++ ++ AT+AFGMGIDK +VR V
Sbjct: 244 TESLAGKLRENGYNATFYHAGMSAQQRSKAQESFLRDDVLIVCATIAFGMGIDKSNVRWV 303
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYA-------RSNFAKGDFYCGESQTENQR 353
IHY PK +E YYQE GR GRDG S L+Y+ R+ + D +SQ E Q
Sbjct: 304 IHYNLPKNVEGYYQEIGRAGRDGAKSDALLFYSFADVMNLRTMLSDND----KSQNELQ- 358
Query: 354 TAIMESLLAAQRYCLLTTCRR 374
+ L Q++ T CRR
Sbjct: 359 ---LVKLERMQQFAEATFCRR 376
>gi|296105298|ref|YP_003615444.1| ATP-dependent DNA helicase RecQ [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295059757|gb|ADF64495.1| ATP-dependent DNA helicase RecQ [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 630
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 156/375 (41%), Positives = 223/375 (59%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L + FGY FRP Q+ +I+ ++E RDCLVVM TG GKSLCYQ+P LV +VVSPLI
Sbjct: 37 VLHETFGYQQFRPGQETIIETVLEGRDCLVVMPTGGGKSLCYQVPALVLNGLTVVVSPLI 96
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S QT V TG +LL++ PE+ ++ +F
Sbjct: 97 SLMKDQVDQLLANGVAAACLNSTQTREQQQEVMAGCRTGQVRLLYIAPER--LMLDNFLD 154
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R+DI+
Sbjct: 155 HLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPELPFMALTATADDTTRLDIV 214
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + ++SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 215 RLLGLNDPLIQVSSFDRPNIRY---MLMEKFKPLDQLLRYVQEQRGKSG--IIYCNSRAK 269
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 270 VEDTAARLQNRGFSAAAYHAGLENHIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 329
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I
Sbjct: 330 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHK 388
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 389 LNAMGAFAEAQTCRR 403
>gi|30692489|ref|NP_174421.2| ATP-dependent DNA helicase Q-like 2 [Arabidopsis thaliana]
gi|75334308|sp|Q9FT73.1|MED34_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit
34; AltName: Full=ATP-dependent DNA helicase Q-like 2;
AltName: Full=RecQ-like protein 2; Short=AtRecQ2;
Short=AtRecQl2
gi|11121445|emb|CAC14866.1| DNA Helicase [Arabidopsis thaliana]
gi|332193225|gb|AEE31346.1| ATP-dependent DNA helicase Q-like 2 [Arabidopsis thaliana]
Length = 705
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 166/380 (43%), Positives = 234/380 (61%), Gaps = 24/380 (6%)
Query: 9 FGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQD 68
FG S +R QK++I I+ RD LV+MA G GKSLCYQLP ++ G T LVVSPL+SL+QD
Sbjct: 85 FGISKYRANQKEIINAIMTGRDVLVIMAAGGGKSLCYQLPAMLRGGTTLVVSPLLSLIQD 144
Query: 69 QVMSLKQRGINAEFLGSA---QTDSSVQTKAETGY--FQLLFMTPEKACIIPISFWSKLL 123
QVM L GI+A L S + + V E G ++L++TPEK F SKL
Sbjct: 145 QVMGLAALGISAYMLTSTSGKENEKFVYKALEKGEDDLKILYVTPEKVSKSK-RFMSKLE 203
Query: 124 K---AG-VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
K AG + L ++DEAHC S+WGHDFR +YK L L+T VP VALTATAT+KV+ D+
Sbjct: 204 KCHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSILKTQFPKVPMVALTATATQKVQNDL 263
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINR-GQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I L + ++S +R NLFY V+ + G+ VDE+ + I +S + S IVYC +
Sbjct: 264 IEMLHIPKCVKFVSSVNRPNLFYSVREKSAVGKLVVDEIAEFIRESYSNNESGIVYCFSR 323
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K+ E+I+ L++ G+ A YH M + RE+ H + +++++V+V T+AFGMGI+KPDVR
Sbjct: 324 KECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 383
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD---FYCGESQTENQRTA 355
VIH+ K++E+YYQESGR GRDG+ S C L++ ++ + FY +
Sbjct: 384 FVIHHSLSKSMETYYQESGRAGRDGLPSECILFFRSADVPRQSSMVFY---------EYS 434
Query: 356 IMESLLAAQRYCL-LTTCRR 374
+++L RYC T CRR
Sbjct: 435 GLQNLYDIVRYCQSKTKCRR 454
>gi|423616875|ref|ZP_17592709.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD115]
gi|401256899|gb|EJR63104.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD115]
Length = 705
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 152/372 (40%), Positives = 225/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ ++E +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLEGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLIQNGISATYINSSISMTEANHRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
+L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 KTLEINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDE+ VM+AT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLMKAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMIATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSECILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|423668466|ref|ZP_17643495.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VDM034]
gi|423675407|ref|ZP_17650346.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VDM062]
gi|401301670|gb|EJS07257.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VDM034]
gi|401308431|gb|EJS13826.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VDM062]
Length = 705
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 224/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVREDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N+L + + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 NTLGINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDEI VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLGKAGVSVSKYHAGMSDHDRNEQQELFLRDEISVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSECILLYYSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|288550569|ref|ZP_05970934.2| ATP-dependent DNA helicase RecQ [Enterobacter cancerogenus ATCC
35316]
gi|288314641|gb|EFC53579.1| ATP-dependent DNA helicase RecQ [Enterobacter cancerogenus ATCC
35316]
Length = 630
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 155/376 (41%), Positives = 223/376 (59%), Gaps = 12/376 (3%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
L + FGY FRP Q+ +I+ ++E RDCLVVM TG GKSLCYQ+P LV +VVSPL
Sbjct: 36 QVLHETFGYQQFRPGQETIIETVLEGRDCLVVMPTGGGKSLCYQVPALVLNGLTVVVSPL 95
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLM+DQV L G+ A L S QT V G +LL++ PE+ ++ +F
Sbjct: 96 ISLMKDQVDQLLANGVAAACLNSTQTREQQQDVMAGCRNGQIRLLYIAPER--LMLDNFL 153
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R+DI
Sbjct: 154 DHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPELPFMALTATADDTTRLDI 213
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+ L L +P++ ++SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 214 VRLLGLNDPFIQVSSFDRPNIRY---MLMEKFKPLDQLLRYVQEQRGKSG--IIYCNSRA 268
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
VE+ + L+ G A YH + + R + F RD+++++VAT+AFGMGI+KP+VR
Sbjct: 269 KVEDTAARLQNRGFSAAAYHAGLENHIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRF 328
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I
Sbjct: 329 VVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERH 387
Query: 360 LLAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 388 KLNAMGAFAEAQTCRR 403
>gi|401676992|ref|ZP_10808972.1| ATP-dependent DNA helicase RecQ [Enterobacter sp. SST3]
gi|400215746|gb|EJO46652.1| ATP-dependent DNA helicase RecQ [Enterobacter sp. SST3]
Length = 609
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 156/376 (41%), Positives = 223/376 (59%), Gaps = 12/376 (3%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
L + FGY FRP Q+ +I+ +++ RDCLVVM TG GKSLCYQ+P LV +VVSPL
Sbjct: 15 QVLHETFGYQQFRPGQETIIETVLQGRDCLVVMPTGGGKSLCYQVPALVLNGLTVVVSPL 74
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLM+DQV L G+ A L S QT V TG +LL++ PE+ ++ +F
Sbjct: 75 ISLMKDQVDQLLANGVAAACLNSTQTREQQQEVMAGCRTGQIRLLYIAPER--LMLDNFL 132
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI
Sbjct: 133 DHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPELPFMALTATADDTTRQDI 192
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+ L L +PY+ ++SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 193 VRLLGLNDPYIQVSSFDRPNIRY---MLMEKFKPLDQLLRYVQEQRGKSG--IIYCNSRA 247
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
VE+ + L+ G A YH + + R + F RD+++++VAT+AFGMGI+KP+VR
Sbjct: 248 KVEDTAARLQNRGFSAAAYHAGLENHIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRF 307
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I
Sbjct: 308 VVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERH 366
Query: 360 LLAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 367 KLNAMGAFAEAQTCRR 382
>gi|344202287|ref|YP_004787430.1| ATP-dependent DNA helicase RecQ [Muricauda ruestringensis DSM
13258]
gi|343954209|gb|AEM70008.1| ATP-dependent DNA helicase RecQ [Muricauda ruestringensis DSM
13258]
Length = 695
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 157/374 (41%), Positives = 223/374 (59%), Gaps = 17/374 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LKK+FG+ F P Q+ ++ I+E D L +M TG GKS+C+QLP L+ TA+VVSPLI+
Sbjct: 12 LKKHFGFDTFLPNQQAIVNSILEGNDLLGIMPTGGGKSVCFQLPALLLHGTAIVVSPLIA 71
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEK-ACIIPISFWS 120
LM+DQV +L+ GI A F S+Q S + K +LL++ PE ++P
Sbjct: 72 LMKDQVDALQANGIPATFYNSSQAAEAQSEILKKLRAQEIKLLYVAPESLPHLMPF---- 127
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L + V LFAVDEAHCIS WGHDFR Y QL KL+ VP A TATA + DI+
Sbjct: 128 -LTEDNVSLFAVDEAHCISAWGHDFRPAYTQLGKLKEVFPNVPIAAFTATADSATQDDIL 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L + N IASFDRKNLF V+ G + ++V+ + + +G I+YC++ K
Sbjct: 187 KQLNITNAERHIASFDRKNLFLEVR---PGTNRFTQIVRFLEQRTDQSG--IIYCLSRKG 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
E++++ L G KA YH M ++AR + F+ D ++VAT+AFGMGIDK +VR V
Sbjct: 242 TEKLAEKLNNNGFKAQAYHAGMDTEARNQVQEDFVNDRTPIIVATIAFGMGIDKSNVRWV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE GR GRD + + L+Y+ S+ + + ES+T+ + A +E +
Sbjct: 302 IHYNMPKNIESYYQEIGRSGRDRLPANTLLFYSFSDVIQLRKFIEESETKEVQLAKLERM 361
Query: 361 LAAQRYCLLTTCRR 374
Q++ +CRR
Sbjct: 362 ---QQFAEALSCRR 372
>gi|295102057|emb|CBK99602.1| ATP-dependent DNA helicase, RecQ family [Faecalibacterium
prausnitzii L2-6]
Length = 525
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 147/338 (43%), Positives = 217/338 (64%), Gaps = 9/338 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
S LKK FGY FRP Q+D+++R+++ +D L VM TG+GKS+CYQ+P L+ +VVSPL
Sbjct: 6 SILKKVFGYDSFRPGQEDIVRRLLDGQDVLAVMPTGAGKSICYQVPALLLPGITIVVSPL 65
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFW 119
+SLM+DQV +L Q G+ A FL ++ TD+ + +A G+++++++ PE+ + +
Sbjct: 66 VSLMKDQVGALVQAGVAAAFLNNSLTDNQKALMLRRAREGWYKIIYVAPERLEMPGFQRF 125
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRID 178
++ + + + VDEAHCIS+WG DFR Y ++ L P V A TATAT +VR D
Sbjct: 126 AQ--EKLISMVTVDEAHCISQWGQDFRPSYLRIKAFVDSLPNRPVVGAFTATATARVRDD 183
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I + L+L+ PY FDR NL++ + Q EL+ +L+ AG IVYC T
Sbjct: 184 IRSHLELRQPYEVTTGFDRPNLYFETRRALPSQK-PKELLDLVLREGDNAG--IVYCSTT 240
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K V+E ++ L+ G++A YH ++ ++ R + F+ D I++MVAT AFGMGIDKP+VR
Sbjct: 241 KQVDETARLLQSRGIRAAAYHAKLDAEVRRKNQDDFLYDRIQIMVATNAFGMGIDKPNVR 300
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN 336
VIHY PK LESYYQE+GR GRDG+ S C L Y+ ++
Sbjct: 301 FVIHYNMPKDLESYYQEAGRAGRDGLPSRCILLYSGTD 338
>gi|56461647|ref|YP_156928.1| superfamily II DNA helicase [Idiomarina loihiensis L2TR]
gi|56180657|gb|AAV83379.1| Superfamily II DNA helicase, RecQ [Idiomarina loihiensis L2TR]
Length = 614
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 156/373 (41%), Positives = 225/373 (60%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FR Q+D++Q ++ RD LV+M TG GKSLCYQLP + LV+SPL+S
Sbjct: 18 LESTFGYHQFRDGQEDIMQAAMQGRDSLVLMPTGGGKSLCYQLPAICGDGLTLVISPLLS 77
Query: 65 LMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV +LK I+A L S +Q + ++G +LL+++PE+ ++ +F +
Sbjct: 78 LMQDQVEALKALDISAATLHSGVSSQESMATMQGLQSGDIKLLYVSPER--VLQPTFIER 135
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + AVDEAHCIS+WGHDFR EY +L LR +L VPF+ALTATA + DII
Sbjct: 136 LQTLKLNFIAVDEAHCISQWGHDFRPEYGKLGVLRNYLPNVPFMALTATADSATQHDIIE 195
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L+ P V +SFDR N+ Y V+ + ++ + K AG I+YC + K
Sbjct: 196 RLCLREPLVHRSSFDRPNIRY---VVQEKYKPLKQVRDYVKKQKGAAG--IIYCGSRKKT 250
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
EE+S++L+Q GV+A YH + + +E R F+RD+I V+VAT+AFGMGI+KP++R VI
Sbjct: 251 EELSESLQQAGVRAAPYHAGIEHQIKESTLRQFLRDDIDVVVATVAFGMGINKPNIRFVI 310
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+++ESYYQE+GR GRDG+ + + Y + + + E +R +
Sbjct: 311 HFDIPRSVESYYQETGRAGRDGLPAEAVMLYDPRDAQWIRRMIEDQENEQRRLVEAQKFS 370
Query: 362 AAQRYCLLTTCRR 374
A Q TCRR
Sbjct: 371 AMQAMAEAQTCRR 383
>gi|408674061|ref|YP_006873809.1| ATP-dependent DNA helicase RecQ [Emticicia oligotrophica DSM 17448]
gi|387855685|gb|AFK03782.1| ATP-dependent DNA helicase RecQ [Emticicia oligotrophica DSM 17448]
Length = 792
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 157/379 (41%), Positives = 232/379 (61%), Gaps = 22/379 (5%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK+ FG+ FR Q+ +I I+ ++ V+M TG+GKSLCYQLP +V TA+V+SPLI+
Sbjct: 14 LKEIFGFDAFRGEQEPIIHNIVSGKNTFVIMPTGAGKSLCYQLPAMVLDGTAIVISPLIA 73
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM++QV + GINA+FL S S V+ +G +LL++ PE + +
Sbjct: 74 LMKNQVDQMSAFGINAQFLNSTLNKSEMTRVKNDVMSGDCKLLYIAPE--SLTKEDNLTF 131
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKL-RTFLLGVPFVALTATATEKVRIDII 180
L KA + AVDEAHCISEWGHDFR EY+++ + +P +ALTATAT KV+ DI
Sbjct: 132 LKKAKLSFIAVDEAHCISEWGHDFRPEYRRIRGIIDDIDPNLPIIALTATATPKVQQDIQ 191
Query: 181 NSLKLKNPYVTIASFDRKNLFYGV--KVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
+L ++ ++ +SF+RKNL+Y + K+ ++ Q L++ I + +G I+YC++
Sbjct: 192 KNLSMEQSHIFKSSFNRKNLYYEIRPKIDSKKQ-----LIKYIANNKGKSG--IIYCLSR 244
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K VEEI+ L G+KA YH + + R + F+ +E ++VAT+AFGMGIDKPDVR
Sbjct: 245 KKVEEIAGLLNVNGIKALPYHAGLDADTRMKNQDAFLNEECDIIVATIAFGMGIDKPDVR 304
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGE---SQTENQRTA 355
VIHY PK+LE YYQE+GR GRDG+ C ++YA + K + + + ++ +N R
Sbjct: 305 FVIHYDAPKSLEGYYQETGRAGRDGLEGNCLMFYAYDDILKLEKFNKDKTVTERDNARAL 364
Query: 356 IMESLLAAQRYCLLTTCRR 374
+ME + Y L CRR
Sbjct: 365 LMEMVA----YSNLGVCRR 379
>gi|154150635|ref|YP_001404253.1| ATP-dependent DNA helicase RecQ [Methanoregula boonei 6A8]
gi|153999187|gb|ABS55610.1| ATP-dependent DNA helicase, RecQ family [Methanoregula boonei 6A8]
Length = 451
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 161/377 (42%), Positives = 220/377 (58%), Gaps = 11/377 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
++ L+KY+GY FRP+Q+ +I II D L +MATGSGKSLCYQLP + G +V+SP
Sbjct: 20 LTLLRKYWGYPAFRPHQEAIIASIIGHNDTLAIMATGSGKSLCYQLPAVYLGGLTIVISP 79
Query: 62 LISLMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISF 118
L++LM+DQV +L RGI A S + S ++ G ++LF++PEK C+ P F
Sbjct: 80 LLALMKDQVDALNARGIPAAAWNSLLDSAGRSRIEAAMRDGRLRILFVSPEK-CLQP-GF 137
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
L + V L A+DEAHCISEWGHDFR EY+ L +LR P +ALTATA +VR D
Sbjct: 138 LEFLQEFPVRLVAIDEAHCISEWGHDFRPEYRDLARLRKCFPSAPVIALTATAVPEVRKD 197
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I L L P + SF R+NL Y +VI + V +L + +G IVYC++
Sbjct: 198 ISRQLGLVKPQSFVGSFCRENLEY--RVIKKKNPLV-QLADICCRHKNESG--IVYCLSK 252
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K+ EE + LK+ G A YH + RE F+++ R++ AT+AFGMGIDKPDVR
Sbjct: 253 KETEECAADLKKRGFTALAYHAGLSRPVREAVQDAFLKNTSRIVCATVAFGMGIDKPDVR 312
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+HY PK++E YYQE+GR GRDG + C L Y+R + + + Q + I +
Sbjct: 313 FVVHYDLPKSVEGYYQETGRAGRDGKPAECVLLYSRGDAVRIRYMLDHDGAGEQASRIAQ 372
Query: 359 SLLAAQR-YCLLTTCRR 374
L YC CRR
Sbjct: 373 KKLRDMTGYCETIGCRR 389
>gi|418020168|ref|ZP_12659486.1| ATP-dependent DNA helicase, partial [Candidatus Regiella
insecticola R5.15]
gi|347604486|gb|EGY29134.1| ATP-dependent DNA helicase [Candidatus Regiella insecticola R5.15]
Length = 534
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 159/373 (42%), Positives = 220/373 (58%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FRP QK++I I+ +DCLV+M TG GKSLCYQ+P LV LVVSPLIS
Sbjct: 17 LRDVFGYQQFRPGQKEIIAAILSGQDCLVIMPTGGGKSLCYQIPALVMKGLTLVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S+QT S V K +G +LL++ PE+ ++ +F +
Sbjct: 77 LMKDQVDQLLAYGVTAACLNSSQTWQQQSEVIAKCRSGKIKLLYIAPER--LVAENFLQQ 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L A+DEAHCIS+WGHDFR EY+ L++L+ +P +ALTATA E R DII
Sbjct: 135 LSFFSPALLAIDEAHCISQWGHDFRPEYRALNQLKLRFPHLPVIALTATADEVTRSDIIR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L P + I SFDR N+ Y +I + + +++L + + K GA S I+YC + V
Sbjct: 195 LLNLHQPLIQINSFDRPNIRY--TLIEKFKP-LEQLYRLVGKQ--GAKSGIIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E L+ G+ YH + S R + F RD+++++VAT+AFGMGI+KP++R VI
Sbjct: 250 ESTVARLQNRGLSVAAYHAGLDSLVRAQVQEAFQRDDLQIVVATVAFGMGINKPNIRFVI 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+T+ESYYQE+GR GRDG+ + L Y S+ E Q+ L
Sbjct: 310 HFDIPRTIESYYQETGRAGRDGLPAEAMLLYDPSDMVWLRHCLEEKPVSEQQNIERHKLN 369
Query: 362 AAQRYCLLTTCRR 374
A + TCRR
Sbjct: 370 AMGAFAEAQTCRR 382
>gi|229103419|ref|ZP_04234101.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock3-28]
gi|228679915|gb|EEL34110.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock3-28]
Length = 705
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 152/372 (40%), Positives = 225/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ ++E +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLEGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLIQNGISATYINSSISMTEANHRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
+L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 KTLEINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDE+ VM+AT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLMKAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMIATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSECILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|456864278|gb|EMF82677.1| ATP-dependent DNA helicase, RecQ family [Leptospira weilii serovar
Topaz str. LT2116]
Length = 514
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 166/383 (43%), Positives = 234/383 (61%), Gaps = 15/383 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKT-ALVV 59
+ S+LK+ +G S FR QK+ I+ ++ +D LV++ TG GKSL YQLP ++ + LV+
Sbjct: 12 LESSLKEIWGISRFRTGQKESIESVLSGKDTLVILPTGGGKSLIYQLPAVLDQSSLTLVI 71
Query: 60 SPLISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPI 116
SPLI+LM+DQV SLK +GI AE+ S Q D + ++A TG Q+L+++PEKA +
Sbjct: 72 SPLIALMKDQVDSLKAKGIAAEYCNSTQDDLEQLRILSRASTGKIQILYLSPEKA--LSR 129
Query: 117 SFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRT-FLLGVPFVALTATATEKV 175
L K + AVDEAHC+S+WGHDFR EY++L +LR + +P VALTATAT KV
Sbjct: 130 QVLEILPKLPLGRIAVDEAHCVSQWGHDFRPEYRKLYELRDKYQRQIPIVALTATATPKV 189
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILK---SVAGAGSII 232
DI NSL LKNP + SF R+NL + V S +EL++ +++ +G I
Sbjct: 190 IQDISNSLGLKNPTLIKGSFYRENLNFSVLFPQNETSKENELLKLLIRGNFQKTESGKAI 249
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
+YC T + VE I LK+ G K G YH +RE+ + + V+VAT AFGMG+
Sbjct: 250 IYCATRQKVESIYNFLKKNGFKVGKYHAGRTDSSREKTQNGYNIGKTNVLVATNAFGMGL 309
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ 352
D PDVR V+H+ P +LESYYQE+GR GRDG +S C L+Y S+ +F G+ EN
Sbjct: 310 DNPDVRLVVHFQIPASLESYYQEAGRAGRDGKSSNCILFYHPSDLVTQNFIIGK---ENN 366
Query: 353 RTAIMESLLA-AQRYCLLTTCRR 374
R E+LL+ + Y + CR+
Sbjct: 367 RKG-GETLLSFVKEYAISDRCRQ 388
>gi|425066310|ref|ZP_18469430.1| ATP-dependent DNA helicase RecQ [Pasteurella multocida subsp.
gallicida P1059]
gi|404381895|gb|EJZ78360.1| ATP-dependent DNA helicase RecQ [Pasteurella multocida subsp.
gallicida P1059]
Length = 632
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 157/376 (41%), Positives = 226/376 (60%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L FGY FR Q++VI + +D LV+MATG+GKSLCYQ+P L LV+SP
Sbjct: 27 LDVLHAVFGYQSFRKGQEEVIDATLMGKDSLVIMATGNGKSLCYQIPALCFEGLTLVISP 86
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L GI A++L S+QT VQ K +G +LL+++PEK ++ SF
Sbjct: 87 LISLMKDQVDQLLANGIEADYLNSSQTFTEQQQVQNKLMSGTLKLLYVSPEK--VMTTSF 144
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + V A+DEAHCIS+WGHDFR EY QL L++ P +ALTATA R D
Sbjct: 145 FHLISHCKVSFVAIDEAHCISQWGHDFRPEYTQLGGLKSCFPHAPIMALTATADHATRQD 204
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L L++P+V I SFDR N+ Y ++ + + +++L + +L +G I+YC +
Sbjct: 205 ILRHLNLQSPHVYIGSFDRPNIRY--TLVEKFKP-MEQLCRFVLGQKGKSG--IIYCNSR 259
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I+++L+ GV A YH + RE+ R F RD ++V+VAT+AFGMGI+K +VR
Sbjct: 260 SKVERIAESLRNKGVSAQAYHAGRETAQREQVQRAFQRDNVQVVVATIAFGMGINKSNVR 319
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+H+ P+++ESYYQE+GR GRD + + L+Y +++A E QR
Sbjct: 320 FVVHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLHKILLEKPESPQRQIEAL 379
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 380 KLQAIGEFAESQTCRR 395
>gi|304414091|ref|ZP_07395459.1| ATP-dependent DNA helicase [Candidatus Regiella insecticola LSR1]
gi|304283305|gb|EFL91701.1| ATP-dependent DNA helicase [Candidatus Regiella insecticola LSR1]
Length = 629
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 159/373 (42%), Positives = 220/373 (58%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FRP QK++I I+ +DCLV+M TG GKSLCYQ+P LV LVVSPLIS
Sbjct: 22 LRDVFGYQQFRPGQKEIIAAILSGQDCLVIMPTGGGKSLCYQIPALVMKGLTLVVSPLIS 81
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S+QT S V +G +LL++ PE+ ++ +F +
Sbjct: 82 LMKDQVDQLLAYGVTAACLNSSQTWQQQSEVIANCRSGKIKLLYIAPER--LVAENFLQQ 139
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY+ L++L+ +P +ALTATA E R DII
Sbjct: 140 LSFFSPALLAVDEAHCISQWGHDFRPEYRALNQLKLRFPHLPVIALTATADEVTRADIIR 199
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I SFDR N+ Y +I + + V++L + + K GA S I+YC + V
Sbjct: 200 LLNLHHPLIQINSFDRPNIRY--TLIEKFKP-VEQLCRLVGKQ--GAKSGIIYCNSRAKV 254
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E L+ G+ YH + S R + F RD+++++V+T+AFGMGI+KP++R VI
Sbjct: 255 ESTVARLQNRGLSVAAYHAGLDSLVRAQVQEAFQRDDLQIVVSTVAFGMGINKPNIRFVI 314
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+T+ESYYQE+GR GRDG+ + L Y S+ E Q+ L
Sbjct: 315 HFDIPRTIESYYQETGRAGRDGLPAEAMLLYDPSDMVWLRHCLEEKPVSEQQNIERHKLN 374
Query: 362 AAQRYCLLTTCRR 374
A + TCRR
Sbjct: 375 AMGAFAEAQTCRR 387
>gi|268592895|ref|ZP_06127116.1| ATP-dependent DNA helicase RecQ [Providencia rettgeri DSM 1131]
gi|291311686|gb|EFE52139.1| ATP-dependent DNA helicase RecQ [Providencia rettgeri DSM 1131]
Length = 608
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 162/373 (43%), Positives = 218/373 (58%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L FGY FRP Q VI I++ RDCLV+M TG GKSLCYQ+P LV LVVSPLIS
Sbjct: 17 LNSTFGYQSFRPGQDAVIGAILDNRDCLVLMPTGGGKSLCYQVPALVKEGVTLVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+NA L S+QT + E G +LL++ PE+ ++ F S+
Sbjct: 77 LMKDQVDQLRLHGVNAACLNSSQTSQEQRQIMELCSQGEIKLLYVAPER--LLTDYFLSQ 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + L AVDEAHCIS+WGHDFR EY+ L +LR L VP +ALTATA E R DII
Sbjct: 135 LAGWNITLLAVDEAHCISQWGHDFRPEYRALGQLRQSLPNVPVMALTATADETTRADIIR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L+L P V ++SFDR N+ Y + +D+L I AG IVYC + V
Sbjct: 195 LLELHEPLVHVSSFDRPNIRY---TLVEKYKPLDQLWFFIKGQKGKAG--IVYCNSRSKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
EE ++ L++ G+ YH + + RE F++D ++V+VAT+AFGMGI+K +VR V
Sbjct: 250 EETTERLQKRGLSVAAYHAGLDAAQREWVQDAFLKDNLQVVVATVAFGMGINKSNVRFVA 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +E+YYQE+GR GRDG+ + L+Y ++ A E Q+ L
Sbjct: 310 HFDIPRNIEAYYQETGRAGRDGVEAEAILFYDPADMAWLRRCLEEKPAGMQQDIERHKLN 369
Query: 362 AAQRYCLLTTCRR 374
A + TCRR
Sbjct: 370 AIAAFAEAQTCRR 382
>gi|294142824|ref|YP_003558802.1| ATP-dependent DNA helicase RecQ [Shewanella violacea DSS12]
gi|293329293|dbj|BAJ04024.1| ATP-dependent DNA helicase RecQ [Shewanella violacea DSS12]
Length = 610
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 152/381 (39%), Positives = 229/381 (60%), Gaps = 19/381 (4%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ S+L+ FGY FR Q++VI++I DCLV+M TG GKSLCYQLP L +VVS
Sbjct: 15 LSSSLQSVFGYRTFRKGQREVIEQICAGVDCLVIMPTGGGKSLCYQLPALQMPGLTIVVS 74
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV SL+Q G+NA +L S+Q + + + +G +LL+++PE+ ++ S
Sbjct: 75 PLISLMKDQVDSLQQMGVNAGYLNSSQAGQESARILREMHSGELKLLYVSPER--LLQAS 132
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
F +L + + LFA+DEAHCIS+WGHDFR EY L +LR + VP +ALTATA + R
Sbjct: 133 FIDRLHELHISLFAIDEAHCISQWGHDFRPEYAALGRLRQYFPHVPIMALTATADQATRQ 192
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGV----KVINRGQSFVDELVQEILKSVAGAGSIIV 233
DI L + P+ + SFDR N+ Y V N+ + FV + S I+
Sbjct: 193 DICQRLTI-TPFSFLTSFDRPNIRYTVAEKLNAANQLRQFV---------TAQNGTSGII 242
Query: 234 YCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGID 293
YC + + V+E+++ L+ G A +YH + R + F++D++ ++VAT+AFGMGI+
Sbjct: 243 YCGSRRRVDEVAERLRLQGHNADSYHAGRTQEERADVQDRFLKDQLDIVVATVAFGMGIN 302
Query: 294 KPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQR 353
K +VR+V+HY PK++ESYYQE+GR GRDG+ S + + ++ + +S+ Q+
Sbjct: 303 KSNVRYVVHYDIPKSVESYYQETGRAGRDGLDSEALMLFDPADIGRVRHLIEQSEPGPQQ 362
Query: 354 TAIMESLLAAQRYCLLTTCRR 374
+ L + TCRR
Sbjct: 363 QVELHKLNTMAAFAEAQTCRR 383
>gi|157144447|ref|YP_001451766.1| ATP-dependent DNA helicase RecQ [Citrobacter koseri ATCC BAA-895]
gi|157081652|gb|ABV11330.1| hypothetical protein CKO_00161 [Citrobacter koseri ATCC BAA-895]
Length = 609
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 154/375 (41%), Positives = 224/375 (59%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+++I+ ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLI
Sbjct: 16 VLQETFGYQQFRPGQEEIIETVVSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLI 75
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q+ V TG +LL++ PE+ ++ +F
Sbjct: 76 SLMKDQVDQLLANGVAAACLNSTQSREQQHEVMAGCRTGQVRLLYIAPER--LMLDNFLE 133
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R+DI+
Sbjct: 134 HLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPSLPFMALTATADDTTRLDIV 193
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 194 RLLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 248
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 249 VEDTAARLQSRGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 308
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I
Sbjct: 309 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPAGQLQDIERHK 367
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 368 LNAMGAFAEAQTCRR 382
>gi|82778997|ref|YP_405346.1| ATP-dependent DNA helicase RecQ [Shigella dysenteriae Sd197]
gi|81243145|gb|ABB63855.1| ATP-dependent DNA helicase [Shigella dysenteriae Sd197]
Length = 611
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 155/374 (41%), Positives = 224/374 (59%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S Q V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQIREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|417840674|ref|ZP_12486783.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M19501]
gi|341950862|gb|EGT77444.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M19501]
Length = 615
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 160/376 (42%), Positives = 224/376 (59%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+S LK FGY FR Q++VI + +D LVVMATG+GKSLCYQ+P L LV+SP
Sbjct: 17 LSVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFEGLTLVISP 76
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ GI A+FL S+QT VQ K +G +LL+++PEK ++ SF
Sbjct: 77 LISLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEK--VMTNSF 134
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + + V A+DEAHCIS+WGHDFR EY QL L+ P +ALTATA R D
Sbjct: 135 FQLISYSKVSFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATADYATRQD 194
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I++ L L+NP+ I SFDR N+ Y + +++L + +L +G I+YC +
Sbjct: 195 ILSHLNLENPHKYIGSFDRPNIRY---TLEEKYKPMEQLTRFVLAQKGKSG--IIYCNSR 249
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I+++L GV A YH M + R+ + F RD ++V+VAT+AFGMGI+K +VR
Sbjct: 250 NKVERIAESLCNKGVSAAAYHAGMETARRDRVQQDFQRDNVQVVVATIAFGMGINKSNVR 309
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V H+ P+++ESYYQE+GR GRD + + L+Y +++A E QR
Sbjct: 310 FVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLEKPETPQRQIEQH 369
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 370 KLEAIGEFAESQTCRR 385
>gi|392969325|ref|ZP_10334740.1| ATP-dependent DNA helicase RecQ [Fibrisoma limi BUZ 3]
gi|387841519|emb|CCH56798.1| ATP-dependent DNA helicase RecQ [Fibrisoma limi BUZ 3]
Length = 736
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 154/373 (41%), Positives = 229/373 (61%), Gaps = 11/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK+ FGYS FR Q+ +I I+ R+ V+M TG+GKSLCYQLP +V+ TA+V+SPLI+
Sbjct: 16 LKEIFGYSQFRGDQEAIIHSILAGRNTFVIMPTGAGKSLCYQLPAIVSDGTAIVISPLIA 75
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM++QV L GINA+FL S + + V+ +G +LL++ PE +
Sbjct: 76 LMKNQVDQLNAFGINAQFLNSTLSKAEMNKVKKDTLSGSLKLLYIAPE--SLTKEENLDF 133
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L KA + A+DEAHCISEWGHDFR EY+++ + + +P +ALTATAT KV+ DI
Sbjct: 134 LKKANISFVAIDEAHCISEWGHDFRPEYRKIRGIVDNIGNLPVIALTATATPKVQQDIQK 193
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
+L++++ + +SF+RKNL+Y +K + +L++ + ++ +G IVYC++ K V
Sbjct: 194 NLQMEDANLYKSSFNRKNLYYEIKPKIDAKK---QLIKYVKQNKGKSG--IVYCLSRKTV 248
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+I++ L +KA YH + R F+ +E+ V+VAT+AFGMGIDKPDVR VI
Sbjct: 249 EDIAELLNVNDIKALPYHAGLDPLTRMNNQDAFLNEEVDVIVATIAFGMGIDKPDVRFVI 308
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
HY PK+LE YYQE+GR GRDG+ C ++Y+ + K + + + + +R L
Sbjct: 309 HYDAPKSLEGYYQETGRAGRDGLEGNCVMFYSYDDIVKLEKF-NKDKPVTERDNAKHLLT 367
Query: 362 AAQRYCLLTTCRR 374
Y L CRR
Sbjct: 368 EMVSYANLGVCRR 380
>gi|423593267|ref|ZP_17569298.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD048]
gi|401226933|gb|EJR33463.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD048]
Length = 705
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 153/372 (41%), Positives = 225/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
+L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 TTLEINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDEI VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLGKAGVSVSKYHAGMSDHDRNEQQELFLRDEISVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSECILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|359727110|ref|ZP_09265806.1| DNA helicase [Leptospira weilii str. 2006001855]
Length = 624
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 164/383 (42%), Positives = 235/383 (61%), Gaps = 15/383 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKT-ALVV 59
+ S+LK+ +G S FR QK+ I+ ++ +D LV++ TG GKSL YQLP ++ + LV+
Sbjct: 12 LESSLKEIWGMSRFRTGQKESIESVLSGKDTLVILPTGGGKSLIYQLPAVLDRSSLTLVI 71
Query: 60 SPLISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPI 116
SPLI+LM+DQV SLK +GI AE+ S Q D + ++A TG ++L+++PEKA +
Sbjct: 72 SPLIALMKDQVDSLKAKGIAAEYCNSTQDDLEQLRILSRASTGKIRILYLSPEKA--LSR 129
Query: 117 SFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR-TFLLGVPFVALTATATEKV 175
+ L K + AVDEAHC+S+WGHDFR EY++L +LR + +P VALTATAT KV
Sbjct: 130 QVFEILPKLSLGRIAVDEAHCVSQWGHDFRPEYRKLYELRDKYQRQIPIVALTATATPKV 189
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILK---SVAGAGSII 232
DI NSL LKNP + SF R+NL + V+ S +EL++ +++ +G I
Sbjct: 190 IQDISNSLGLKNPTLIKGSFYRENLNFSVRFPQNETSKENELLKLLIRGNFQKTESGKAI 249
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
+YC T + VE LK+ G K G YH +RE+ + + V+VAT AFGMG+
Sbjct: 250 IYCATRQKVESTYNFLKKNGFKVGKYHAGRTDSSREKTQNGYNIGKTNVLVATNAFGMGL 309
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ 352
D PDVR V+H+ P +LESYYQE+GR GRDG +S C L+Y S+ +F G+ EN
Sbjct: 310 DNPDVRLVVHFQIPASLESYYQEAGRAGRDGKSSNCILFYHPSDLVTQNFIIGK---ENN 366
Query: 353 RTAIMESLLA-AQRYCLLTTCRR 374
R E+LL+ + Y + CR+
Sbjct: 367 RKG-GETLLSFVKEYAISDRCRQ 388
>gi|293417289|ref|ZP_06659914.1| ATP-dependent DNA helicase RecQ [Escherichia coli B185]
gi|291431057|gb|EFF04052.1| ATP-dependent DNA helicase RecQ [Escherichia coli B185]
Length = 611
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 155/374 (41%), Positives = 224/374 (59%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVVAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMTWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|309784542|ref|ZP_07679180.1| ATP-dependent DNA helicase RecQ [Shigella dysenteriae 1617]
gi|308927648|gb|EFP73117.1| ATP-dependent DNA helicase RecQ [Shigella dysenteriae 1617]
Length = 609
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 155/374 (41%), Positives = 224/374 (59%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S Q V T TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQIREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|15806307|ref|NP_295013.1| DNA helicase RecQ [Deinococcus radiodurans R1]
gi|6459036|gb|AAF10859.1|AE001976_2 DNA helicase RecQ [Deinococcus radiodurans R1]
Length = 824
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 221/374 (59%), Gaps = 10/374 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ +GY FR Q +++Q++ E + LV+M TG GKSLCYQLP L+ T +VVSPLI+
Sbjct: 16 LQTIWGYPAFRGVQGEIVQQVAEGGNALVLMPTGGGKSLCYQLPSLLRPGTGIVVSPLIA 75
Query: 65 LMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L+Q G+ A FL S V+ G LL++ PE+ ++P +
Sbjct: 76 LMKDQVDTLRQNGVRAAFLNSTLLPHEAREVEDALLRGDLDLLYVAPER-LLMPRTL-DL 133
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L +A V LFA+DEAHC+S+WGHDFR EY+QL L +P VALTATA E+ R DI +
Sbjct: 134 LERAPVALFAIDEAHCVSQWGHDFRPEYQQLSVLAERFPELPRVALTATADERTRADIKS 193
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L+L++ ++SFDR N+ Y V + + ++ + ++E AG IVYC++ K V
Sbjct: 194 VLRLEDAPQFVSSFDRPNIQYRVGLKDSPKTQLLHFIREEHPGDAG----IVYCLSRKSV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
EE +K L+ G+ A YH + S R F+ +E ++ AT+AFGMGIDKP+VR V
Sbjct: 250 EETAKWLQAQGIDALAYHAGLSSTERNNVQERFLNEEGVIVCATVAFGMGIDKPNVRFVA 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H PK++E YYQE+GR GRDG+ S W+ Y S+ +S + + S L
Sbjct: 310 HLDLPKSMEGYYQETGRAGRDGLPSTAWMVYGLSDVVNVRRMLAQSDAPEEVKRVEASKL 369
Query: 362 AA-QRYCLLTTCRR 374
A YC TCRR
Sbjct: 370 DALLTYCEAATCRR 383
>gi|432871713|ref|ZP_20091743.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE147]
gi|431407675|gb|ELG90884.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE147]
Length = 611
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCCTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSKGISAAAYHAGLENNIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|313201320|ref|YP_004039978.1| ATP-dependent DNA helicase recq [Methylovorus sp. MP688]
gi|312440636|gb|ADQ84742.1| ATP-dependent DNA helicase RecQ [Methylovorus sp. MP688]
Length = 609
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 160/383 (41%), Positives = 235/383 (61%), Gaps = 26/383 (6%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY+ FR Q+DV++ + + D LV+M TG GKSLCYQ+P L+ A+VVSPLI+
Sbjct: 10 LESIFGYNQFRGPQQDVVEHLAQGGDALVLMPTGGGKSLCYQIPALLRPGLAIVVSPLIA 69
Query: 65 LMQDQVMSLKQRGINAEFLGSA-QTDSS--VQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LMQ+QV +L+Q G+ A FL S+ Q D++ +Q + +G ++L++ PE+ ++ SF S
Sbjct: 70 LMQNQVEALQQLGVEAAFLNSSLQADAAYQLQQRILSGDIKILYVAPER--LMLGSFLSL 127
Query: 122 LLKA----GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
L + G+ LFA+DEAHC+S+WGHDFR EY+QL L VP VALTATA R
Sbjct: 128 LDEVQAHIGLALFAIDEAHCVSQWGHDFRPEYRQLTILHERFPDVPRVALTATADAPTRA 187
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
+II L L++ I+SFDR N+ Y + + N + +++ ++ + AG IVYC++
Sbjct: 188 EIIERLNLEHARQFISSFDRPNIRYRIVLKNNARQQLEQFLETEHPNDAG----IVYCLS 243
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
+ V+E + L+ G A YH + + RE+ R F+R+E +MVAT+AFGMGIDKP+V
Sbjct: 244 RRKVDETAAWLQSRGWNALPYHAGLDAATREKHQRQFLREEGIIMVATIAFGMGIDKPNV 303
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYA-------RSNFAKGDFYCGESQTE 350
R V H PK++ESYYQE+GR GRDG+ + W+ Y R GD + E
Sbjct: 304 RFVAHLDLPKSMESYYQETGRAGRDGLQANAWMAYGLGDVVSMRQMLDSGDAPEERKRVE 363
Query: 351 NQRTAIMESLLAAQRYCLLTTCR 373
Q+ +++LL +C T CR
Sbjct: 364 RQK---LDALLG---FCEATGCR 380
>gi|423523321|ref|ZP_17499794.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuA4-10]
gi|401171563|gb|EJQ78789.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuA4-10]
Length = 705
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 153/372 (41%), Positives = 225/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLIQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + + +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHSILDYLPEKPLVLALTATATPQVRDDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
++L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 STLEINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDEI VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLGKAGVSVSKYHAGMSDHDRNEQQELFLRDEISVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSECILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|410624460|ref|ZP_11335257.1| ATP-dependent DNA helicase RecQ [Glaciecola pallidula DSM 14239 =
ACAM 615]
gi|410155967|dbj|GAC30631.1| ATP-dependent DNA helicase RecQ [Glaciecola pallidula DSM 14239 =
ACAM 615]
Length = 627
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 147/373 (39%), Positives = 223/373 (59%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK FGY+ FR Q +VI +I+ +D L+++ TG GKSLCYQ+P L +VVSPLIS
Sbjct: 39 LKDTFGYAEFRAGQMEVIDKILNGQDALILLPTGGGKSLCYQVPALALEGITIVVSPLIS 98
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIPISFWSK 121
LMQDQV L +G+ A +L S+Q Q E G LL++ PE+ ++ F +
Sbjct: 99 LMQDQVQQLTAQGVKAAYLNSSQDAEESQQITEQLFRGELDLLYVAPER--LLKSYFLNS 156
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + V L AVDEAHC+S WGHDFR +Y+QL +L++ VPF+ALTATA ++DI +
Sbjct: 157 LQRVKVSLIAVDEAHCVSHWGHDFRQDYRQLGRLKSQFQNVPFIALTATADHATQVDIQH 216
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L+L+NP+V FDR N+ Y + +G D++V + + AG IVYC + V
Sbjct: 217 QLQLENPFVFKGGFDRPNIRYNLLAKYKG---FDQVVAFVKQQDGAAG--IVYCNSRAKV 271
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
+++++ L+ G+K YH + RE F++D+++V++AT+AFGMGI+K +VR V+
Sbjct: 272 DDLTQRLQSAGIKCDAYHAGRDTATREFVQTQFLKDDLQVVIATVAFGMGINKSNVRFVV 331
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+++ESYYQE+GR GRDG+ + L + + A+ + ++ M
Sbjct: 332 HHDVPRSVESYYQETGRAGRDGMPAEALLLFDERDAARIKQWISTGTAPDRYDIEMHKFE 391
Query: 362 AAQRYCLLTTCRR 374
A + + TCRR
Sbjct: 392 AMEAFAEAQTCRR 404
>gi|407705241|ref|YP_006828826.1| lipoprotein [Bacillus thuringiensis MC28]
gi|407382926|gb|AFU13427.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis MC28]
Length = 705
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 152/372 (40%), Positives = 225/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ ++E +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLEGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLIQNGISATYINSSISMTEANHRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
+L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 KTLEINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDE+ VM+AT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLMKAGVSISKYHAGMSDHDRNEQQELFLRDEVSVMIATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSECILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|257464903|ref|ZP_05629274.1| ATP-dependent DNA helicase RecQ [Actinobacillus minor 202]
gi|257450563|gb|EEV24606.1| ATP-dependent DNA helicase RecQ [Actinobacillus minor 202]
Length = 604
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 160/377 (42%), Positives = 222/377 (58%), Gaps = 14/377 (3%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ L FGY FR Q+++I+ ++ D LV+M TG GKSLCYQ+P L LV+SPL
Sbjct: 9 AILNNIFGYQQFRQGQQEIIEAVLNGLDTLVIMTTGGGKSLCYQVPALCIEGLTLVISPL 68
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLM+DQV L GI A ++ S QT V+ KA +G +LL+++PEK ++ F+
Sbjct: 69 ISLMKDQVDQLLTNGIEAGYINSTQTFEEQQLVEQKAISGQLKLLYLSPEK--VMTQGFF 126
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+ + L AVDEAHC+S+WGHDFR EY L LR+ VP +ALTATA R DI
Sbjct: 127 HFISHCKISLIAVDEAHCVSQWGHDFRPEYTLLGGLRSAFPKVPMMALTATADPTTRHDI 186
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSF--VDELVQEILKSVAGAGSIIVYCMT 237
I+ L+L++P+ + SFDR N+ Y V+ + F +++L + I K +G IVYC +
Sbjct: 187 IHHLRLQDPHTYLGSFDRPNIRYTVQ-----EKFKPMEQLAKFIAKQQGKSG--IVYCNS 239
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K VEEI++ L GV YH M + RE F RD I+V+VAT+AFGMGI+K +V
Sbjct: 240 RKKVEEITEKLSARGVSVMGYHAGMTIQQRETVQNAFQRDNIQVVVATIAFGMGINKSNV 299
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R V H+ P+++ESYYQE+GR GRD + S L+Y +++A E QR
Sbjct: 300 RFVAHFDLPRSIESYYQETGRAGRDDLPSEAILFYDPADYAWLQKVLLEEPESEQRNIKQ 359
Query: 358 ESLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 360 HKLQAISAFAESQTCRR 376
>gi|440289627|ref|YP_007342392.1| ATP-dependent DNA helicase RecQ [Enterobacteriaceae bacterium
strain FGI 57]
gi|440049149|gb|AGB80207.1| ATP-dependent DNA helicase RecQ [Enterobacteriaceae bacterium
strain FGI 57]
Length = 609
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 144/338 (42%), Positives = 212/338 (62%), Gaps = 10/338 (2%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+++I ++E RDCLVVM TG GKSLCYQ+P LV +VVSPLI
Sbjct: 16 VLQETFGYQQFRPGQENIIDTVLEGRDCLVVMPTGGGKSLCYQIPALVLNGLTVVVSPLI 75
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A + S Q+ V +G +LL++ PE+ ++ +F
Sbjct: 76 SLMKDQVDQLIANGVAAACINSTQSREQQQEVMAGCRSGQIRLLYIAPER--LMLDNFLE 133
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L + AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 134 HLAHWNPVMLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTTRRDIV 193
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 194 RLLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 248
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ AG YH + + R + F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 249 VEDTAARLQSRGISAGAYHAGLDNAVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 308
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A
Sbjct: 309 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346
>gi|406983517|gb|EKE04701.1| hypothetical protein ACD_20C00021G0003 [uncultured bacterium]
Length = 608
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 159/377 (42%), Positives = 217/377 (57%), Gaps = 10/377 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L FGY FR Q ++I II D L++M TG GKSLCYQ+P L +VVSP
Sbjct: 10 LDILHSIFGYEHFRNQQAEIIDHIINGNDALILMPTGGGKSLCYQIPALCLPGVTIVVSP 69
Query: 62 LISLMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LI+LMQDQV SLKQ GI+A L S A+ S V+ K G +++++PE+ + SF
Sbjct: 70 LIALMQDQVESLKQLGISASVLNSTLSARESSEVEEKMRNGELDIIYVSPER--LNTESF 127
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + + + LFA+DEAHC+S+WGHDFR EY + L+ VP +ALTATA E R D
Sbjct: 128 LNNIEQCELALFAIDEAHCVSQWGHDFRPEYLEFSNLKNRFPHVPRIALTATADELTRQD 187
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
II L L+N I+SFDR N+ Y + + + + + E K +G IVYC++
Sbjct: 188 IIKHLGLENGRTFISSFDRPNIRYRIMTKDNEKKQLLNFLNEEHKGDSG----IVYCISR 243
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
V EI+K LK+ G A YH + R + FI+D+ VMVAT+AFGMGI+KPDVR
Sbjct: 244 DKVMEIAKYLKENGYDALPYHAGLNKDKRMKNQDRFIKDDGVVMVATIAFGMGINKPDVR 303
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI-M 357
V H PK++ESYYQE+GR GRDG+ S W+ Y + K + S+ + +
Sbjct: 304 FVAHLDLPKSVESYYQETGRAGRDGLPSDAWMVYGIEDIVKLQQFIIRSKANAEHKMLEY 363
Query: 358 ESLLAAQRYCLLTTCRR 374
+ L A Y CRR
Sbjct: 364 QKLDALLGYVETVKCRR 380
>gi|294499016|ref|YP_003562716.1| ATP-dependent DNA helicase RecQ [Bacillus megaterium QM B1551]
gi|294348953|gb|ADE69282.1| ATP-dependent DNA helicase RecQ [Bacillus megaterium QM B1551]
Length = 711
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 158/377 (41%), Positives = 225/377 (59%), Gaps = 14/377 (3%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
++ L+ YFGY FR Q++ I+ ++E + +M TG GKSLCYQ+P L+ T LV+SP
Sbjct: 7 LTHLQSYFGYDSFRKGQEESIRYVLEGHNTACIMPTGGGKSLCYQIPSLLLEGTTLVISP 66
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIPISF 118
LISLM+DQV +L GI A ++ S+ T + VQ + E G ++LL++ PE+ + F
Sbjct: 67 LISLMKDQVDTLNAAGIPATYINSSLTHTEVQQRLEEVALGEYKLLYVAPER--LESPQF 124
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRI 177
+L + L AVDEAHCIS+WGHDFR Y ++++L + L P V LTATAT +VR
Sbjct: 125 LEQLQMLPIPLVAVDEAHCISQWGHDFRPSYLRINELISKLSNAPIVMGLTATATPQVRE 184
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI +L + Y + F+R+NL + V +GQ + + Q I K+ AG I+Y T
Sbjct: 185 DICRALHINEEYTVMTGFERENLSFAVV---KGQDRISYIEQYIRKNDQEAG--IIYAAT 239
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
KDVEE+ L++ GV YH M +R+E F++D+++VMVAT AFGMGIDK ++
Sbjct: 240 RKDVEELHARLQKSGVNVSKYHAGMNGNSRDEEQNRFLQDDVQVMVATSAFGMGIDKSNI 299
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI- 356
R V+HY PK +ESYYQE+GR GRDG+ S C + Y+ + F E T N + I
Sbjct: 300 RFVLHYQLPKNMESYYQEAGRAGRDGLPSECIVLYSPQDIRVQRFLI-EQSTSNPKKQIQ 358
Query: 357 -MESLLAAQRYCLLTTC 372
+E L YC C
Sbjct: 359 DLEKLQNMVNYCHTEGC 375
>gi|154506622|ref|ZP_02043079.1| hypothetical protein RUMGNA_03889 [Ruminococcus gnavus ATCC 29149]
gi|153793375|gb|EDN75797.1| ATP-dependent DNA helicase RecQ [Ruminococcus gnavus ATCC 29149]
Length = 763
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 157/384 (40%), Positives = 228/384 (59%), Gaps = 22/384 (5%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK YFGY FRP Q+++I +I+ RD L +M TG+GKSLCYQ+P L+ +V+SPLIS
Sbjct: 19 LKTYFGYDSFRPGQEEIIDQILAGRDALAIMPTGAGKSLCYQVPALMMRGITIVISPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM DQV +L + GI+A ++ S+ T++ V A+ G ++++++ PE+ + F
Sbjct: 79 LMMDQVKALNEAGIHAAYINSSLTENQVAKALEFAKAGRYKIVYVAPER--LETPRFLDF 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
A + + +DEAHCIS+WG DFR Y ++ L P V A TATAT++V+ DI
Sbjct: 137 ACHAEISMVTIDEAHCISQWGQDFRPSYVRIVSFIRQLPVRPIVTAFTATATKRVQTDIR 196
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
LKL+NPYV + FDR+NL++ V+ + E ++E L+ + II YC T K+
Sbjct: 197 EVLKLQNPYVAVTGFDRENLYFEVQRTKEKK----ERIREYLEKHSDESGII-YCATRKN 251
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+E+ L+ G G YH MG++AR+ + FI D I+VM+AT AFGMGIDK +VR+V
Sbjct: 252 VDELYLFLESAGFSVGRYHAGMGNEARKSSQEDFIYDRIQVMIATNAFGMGIDKSNVRYV 311
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDF----------YCGESQTE 350
+HY P++LE+YYQE+GR GRD S C +YY+ + F Y E + +
Sbjct: 312 LHYNMPQSLENYYQEAGRAGRDSEPSECIIYYSPQDVVINQFLLESKENYGEYTAE-EMQ 370
Query: 351 NQRTAIMESLLAAQRYCLLTTCRR 374
N + E L YC T C R
Sbjct: 371 NIQVQDRERLQKMTTYCTTTGCLR 394
>gi|242237700|ref|YP_002985881.1| ATP-dependent DNA helicase RecQ [Dickeya dadantii Ech703]
gi|242129757|gb|ACS84059.1| ATP-dependent DNA helicase RecQ [Dickeya dadantii Ech703]
Length = 607
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 157/373 (42%), Positives = 223/373 (59%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+ +I + RDCLV+M TG GKSLCYQ+P LV LVVSPLIS
Sbjct: 17 LRETFGYQQFRPGQQAIIHAAVSGRDCLVIMPTGGGKSLCYQIPALVLDGLTLVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G++A L S QT +V +G +LL++ PE+ + F +
Sbjct: 77 LMKDQVDQLQAYGVSAACLNSTQTREQQMAVIAGCRSGQIRLLYIAPER--LTNEGFLEQ 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L A+DEAHCIS+WGHDFR EY++L ++ +P VALTATA E R DII
Sbjct: 135 FTGWNPSLIAIDEAHCISQWGHDFRPEYRELGYIKQRFPQLPVVALTATADETTRNDIIR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L++P V I+SFDR N+ Y ++ + + +D+L + +G I+YC + V
Sbjct: 195 LLGLRDPLVQISSFDRPNIRY--TLVEKFKP-LDQLWLFVQGQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+IS L+ G+ G YH + ++ R + F+RD+++V+VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDISARLQNRGLSVGAYHAGLDNERRAQVQEAFLRDDLQVVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+T+ESYYQE+GR GRDG+A+ L+Y ++ A E Q L
Sbjct: 310 HFDIPRTIESYYQETGRAGRDGLAAEAALFYDPADMAWLRRCLEEKPASAQLDIERHKLN 369
Query: 362 AAQRYCLLTTCRR 374
A + TCRR
Sbjct: 370 AMGAFAEAQTCRR 382
>gi|386821390|ref|ZP_10108606.1| ATP-dependent DNA helicase RecQ [Joostella marina DSM 19592]
gi|386426496|gb|EIJ40326.1| ATP-dependent DNA helicase RecQ [Joostella marina DSM 19592]
Length = 699
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 157/378 (41%), Positives = 219/378 (57%), Gaps = 17/378 (4%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+++TLK+YFGY FRP Q+++I I+ DCLV+M TG GKS+CYQLP L+ +V+S
Sbjct: 7 ILNTLKEYFGYDSFRPLQREIIDTILNGNDCLVIMPTGGGKSICYQLPALLQDGLTIVIS 66
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQ---TKAETGYFQLLFMTPEKACIIPIS 117
PLI+LM+DQV L GI A FL S+Q+ + + E +LL++ PE +
Sbjct: 67 PLIALMKDQVDGLNVNGIPACFLNSSQSTAEQEVIFNDIEAKKIKLLYVAPESLSYLENI 126
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
F S + L AVDEAHCIS WGHDFR Y QL L+ P +ALTATA + R
Sbjct: 127 FSS----TKISLIAVDEAHCISSWGHDFRPAYTQLGFLKNRFPNTPLIALTATADKATRE 182
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI N L + N +ASFDRKNL V+ G + +++Q + K +G IVYC++
Sbjct: 183 DIANQLNISNAKKFVASFDRKNLSLEVRP---GTDRIKQIIQFLNKRPNESG--IVYCLS 237
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K E I++ L+Q G A YH + R + FI D+ +++ AT+AFGMGIDK +V
Sbjct: 238 RKTTESIAEKLQQAGYNAEAYHAGVNHDGRSKVQEDFINDKTQIVCATVAFGMGIDKSNV 297
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAK-GDFYCGESQTENQRTAI 356
R VIHY PK +E YYQE GR GRDG+ S L+++ ++ + F G +E Q
Sbjct: 298 RWVIHYNLPKNIEGYYQEIGRAGRDGLPSYTLLFHSYADVVQLQKFAEGAGNSEVQ---- 353
Query: 357 MESLLAAQRYCLLTTCRR 374
+ L ++Y +CRR
Sbjct: 354 LAKLERMKQYADALSCRR 371
>gi|336434030|ref|ZP_08613835.1| hypothetical protein HMPREF0991_02954 [Lachnospiraceae bacterium
2_1_58FAA]
gi|336014617|gb|EGN44457.1| hypothetical protein HMPREF0991_02954 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 753
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 157/384 (40%), Positives = 228/384 (59%), Gaps = 22/384 (5%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK YFGY FRP Q+++I +I+ RD L +M TG+GKSLCYQ+P L+ +V+SPLIS
Sbjct: 9 LKTYFGYDSFRPGQEEIIDQILAGRDALAIMPTGAGKSLCYQVPALMMRGITIVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM DQV +L + GI+A ++ S+ T++ V A+ G ++++++ PE+ + F
Sbjct: 69 LMMDQVKALNEAGIHAAYINSSLTENQVAKALEFAKAGRYKIVYVAPER--LETPRFLDF 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
A + + +DEAHCIS+WG DFR Y ++ L P V A TATAT++V+ DI
Sbjct: 127 ACHAEISMVTIDEAHCISQWGQDFRPSYVRIVSFIRQLPVRPIVTAFTATATKRVQTDIR 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
LKL+NPYV + FDR+NL++ V+ + E ++E L+ + II YC T K+
Sbjct: 187 EVLKLQNPYVAVTGFDRENLYFEVQRTKEKK----ERIREYLEKHSDESGII-YCATRKN 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+E+ L+ G G YH MG++AR+ + FI D I+VM+AT AFGMGIDK +VR+V
Sbjct: 242 VDELYLFLESAGFSVGRYHAGMGNEARKSSQEDFIYDRIQVMIATNAFGMGIDKSNVRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDF----------YCGESQTE 350
+HY P++LE+YYQE+GR GRD S C +YY+ + F Y E + +
Sbjct: 302 LHYNMPQSLENYYQEAGRAGRDSEPSECIIYYSPQDVVINQFLLESKENYGEYTAE-EMQ 360
Query: 351 NQRTAIMESLLAAQRYCLLTTCRR 374
N + E L YC T C R
Sbjct: 361 NIQVQDRERLQKMTTYCTTTGCLR 384
>gi|432716451|ref|ZP_19951464.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE9]
gi|431269860|gb|ELF61161.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE9]
Length = 611
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 155/374 (41%), Positives = 224/374 (59%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ DCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGHDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSKGISAAAYHAGLENNIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|423204847|ref|ZP_17191403.1| ATP-dependent DNA helicase RecQ [Aeromonas veronii AMC34]
gi|404625723|gb|EKB22538.1| ATP-dependent DNA helicase RecQ [Aeromonas veronii AMC34]
Length = 611
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 150/376 (39%), Positives = 230/376 (61%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
++ L+ FGY FRP Q ++I++I+ RD LV+ TG GKSLCYQ+P L+ +VVSP
Sbjct: 17 LALLQAVFGYQQFRPGQLEIIEQIVAGRDALVLKPTGGGKSLCYQIPALLRPGLGVVVSP 76
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT-DSSVQTKA--ETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV SL+ G+ A ++ SA + + +Q A G +L++++PE+ ++ F
Sbjct: 77 LISLMKDQVDSLRANGVAAVYINSALSREEMIQNFAAMRRGEIKLVYVSPER--LLQHEF 134
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+L + + LFA+DEAHC+S+WGHDFR EY L +L+ + VP VALTATA E R D
Sbjct: 135 MDRLAELPLGLFAIDEAHCVSQWGHDFRPEYAALGRLKQWFPQVPVVALTATADEATRSD 194
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
+++ L+L +P++ ASFDR N+ Y + + + ++ ++L++ + G IVYC +
Sbjct: 195 MLHRLELNDPFIHTASFDRPNIRYSL--VEKFKA-AEQLLRYVQSQKGNCG--IVYCSSR 249
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VEE+++ L + G KA YH + + R++ F++D+I ++VAT+AFGMGIDKP+VR
Sbjct: 250 NRVEEVAERLSRHGCKAAPYHAGLPLEQRQQTQEAFLKDDIEIVVATVAFGMGIDKPNVR 309
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+HY PK +ESYYQE+GR GRDG + L Y ++ + + Q
Sbjct: 310 FVVHYDIPKNIESYYQETGRAGRDGTPAEALLLYDPADIGRVRRLLDNIENPQQLQVEQY 369
Query: 359 SLLAAQRYCLLTTCRR 374
L + TCRR
Sbjct: 370 KLNVMAAFAEAQTCRR 385
>gi|253999232|ref|YP_003051295.1| ATP-dependent DNA helicase RecQ [Methylovorus glucosetrophus
SIP3-4]
gi|253985911|gb|ACT50768.1| ATP-dependent DNA helicase RecQ [Methylovorus glucosetrophus
SIP3-4]
Length = 609
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 157/381 (41%), Positives = 231/381 (60%), Gaps = 22/381 (5%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY+ FR Q+DV++ + + D LV+M TG GKSLCYQ+P L+ A+VVSPLI+
Sbjct: 10 LESIFGYNQFRGPQQDVVEHLAQGGDALVLMPTGGGKSLCYQIPALLRPGLAIVVSPLIA 69
Query: 65 LMQDQVMSLKQRGINAEFLGSA-QTDSS--VQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LMQ+QV +L+Q G+ A FL S+ Q D + +Q + +G ++L++ PE+ +
Sbjct: 70 LMQNQVEALQQLGVEAAFLNSSLQADEAYQLQQRILSGDIKILYVAPERLMLSSFLSLLD 129
Query: 122 LLKA--GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
++A G+ LFA+DEAHC+S+WGHDFR EY+QL L VP VALTATA R +I
Sbjct: 130 EVQAHIGLALFAIDEAHCVSQWGHDFRPEYRQLTILHERFPDVPRVALTATADAPTRAEI 189
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
I L L++ I+SFDR N+ Y + + N + +++ ++ + AG IVYC++ +
Sbjct: 190 IERLNLEHARQFISSFDRPNIRYRIVLKNNARQQLEQFLETEHPNDAG----IVYCLSRR 245
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+E + L+ G A YH + + RE+ R F+R+E +MVAT+AFGMGIDKP+VR
Sbjct: 246 KVDETAAWLQSRGWNALPYHAGLDAATREKHQRQFLREEGIIMVATIAFGMGIDKPNVRF 305
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYA-------RSNFAKGDFYCGESQTENQ 352
V H PK++ESYYQE+GR GRDG+ + W+ Y R GD + E Q
Sbjct: 306 VAHLDLPKSMESYYQETGRAGRDGLQANAWMAYGLGDVVSMRQMLDSGDAPEERKRVERQ 365
Query: 353 RTAIMESLLAAQRYCLLTTCR 373
+ +++LL +C T CR
Sbjct: 366 K---LDALLG---FCEATGCR 380
>gi|417838967|ref|ZP_12485182.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M19107]
gi|341955862|gb|EGT82310.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M19107]
Length = 619
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 159/376 (42%), Positives = 224/376 (59%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+S LK FGY FR Q++VI + +D LVVMATG+GKSLCYQ+P L LV+SP
Sbjct: 17 LSVLKSVFGYQSFRKGQEEVIHAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISP 76
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ GI A+FL S+QT VQ K +G +LL+++PEK ++ SF
Sbjct: 77 LISLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEK--VMTNSF 134
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + + V A+DEAHCIS+WGH+FR EY QL L+ P +ALTATA R D
Sbjct: 135 FQLISYSKVSFIAIDEAHCISQWGHNFRPEYTQLGGLKASFPHAPIMALTATADYATRQD 194
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L L+NP+ I SFDR N+ Y + +++L++ +L +G I+YC +
Sbjct: 195 ILTHLNLENPHKYIGSFDRPNIRY---TLEEKYKPMEQLIRFVLAQKGKSG--IIYCNSR 249
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I+++L+ GV A YH M + RE + F D ++V+VAT+AFGMGI+K +VR
Sbjct: 250 NKVERIAESLRNKGVSAAAYHAGMETAVRECVQQDFQSDNVQVVVATIAFGMGINKSNVR 309
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V H+ P+++ESYYQE+GR GRD + + L+Y +++A E QR
Sbjct: 310 FVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLEKPETPQRQIEQH 369
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 370 KLEAIGEFAESQTCRR 385
>gi|417664450|ref|ZP_12314029.1| ATP-dependent DNA helicase RecQ [Escherichia coli AA86]
gi|330908124|gb|EGH36643.1| ATP-dependent DNA helicase RecQ [Escherichia coli AA86]
Length = 609
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 155/374 (41%), Positives = 224/374 (59%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RD LVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIIDTVLSGRDSLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFIALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|384047158|ref|YP_005495175.1| ATP-dependent DNA helicase RecQ [Bacillus megaterium WSH-002]
gi|345444849|gb|AEN89866.1| ATP-dependent DNA helicase RecQ [Bacillus megaterium WSH-002]
Length = 711
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 158/377 (41%), Positives = 224/377 (59%), Gaps = 14/377 (3%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
++ L+ YFGY FR Q++ I+ ++E + +M TG GKSLCYQ+P L+ T LV+SP
Sbjct: 7 LTHLQSYFGYDSFRKGQEESIRYVLEGHNTACIMPTGGGKSLCYQIPSLLLEGTTLVISP 66
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIPISF 118
LISLM+DQV +L GI A ++ S+ T + VQ + E G ++LL++ PE+ + F
Sbjct: 67 LISLMKDQVDTLNAAGIPATYINSSLTHTEVQQRLEEVALGEYKLLYVAPER--LESPQF 124
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRI 177
+L + L AVDEAHCIS+WGHDFR Y ++ L T L P V LTATAT +VR
Sbjct: 125 LEQLQMLPIPLVAVDEAHCISQWGHDFRPSYLRISDLITKLSNAPIVMGLTATATPQVRE 184
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI +L + Y + F+R+NL + V +GQ + + Q I K+ AG I+Y T
Sbjct: 185 DICRALHINEEYTVMTGFERENLSFAVV---KGQDRISYIDQYIRKNDQEAG--IIYAAT 239
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
KDVEE+ L++ GV YH M + +R+E F++D+++VM+AT AFGMGIDK ++
Sbjct: 240 RKDVEELHARLQKSGVNVSKYHAGMSANSRDEEQNRFLQDDVQVMIATSAFGMGIDKSNI 299
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI- 356
R V+HY PK +ESYYQE+GR GRDG+ S C + Y+ + F E T N + I
Sbjct: 300 RFVLHYQLPKNMESYYQEAGRAGRDGLPSECIVLYSPQDIRVQRFLI-EQSTSNPKKQIQ 358
Query: 357 -MESLLAAQRYCLLTTC 372
+E L YC C
Sbjct: 359 DLEKLQNMVNYCHTEGC 375
>gi|456877507|gb|EMF92525.1| ATP-dependent DNA helicase, RecQ family [Leptospira santarosai str.
ST188]
Length = 621
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 160/382 (41%), Positives = 233/382 (60%), Gaps = 13/382 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKT-ALVV 59
+ S+LK+ +G S FR QK+ I+ ++ +D LV++ TG GKSL YQLP ++ G + LV+
Sbjct: 12 LESSLKEIWGMSRFRTGQKESIESVLNGKDTLVILPTGGGKSLVYQLPAVLEGSSLTLVI 71
Query: 60 SPLISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPI 116
SPLI+LM+DQV SLK +GI AE+ S Q D + ++A TG ++L+++PEKA +
Sbjct: 72 SPLIALMKDQVDSLKAKGIAAEYCNSTQDDLEQLRILSRAATGKIRILYLSPEKA--LSR 129
Query: 117 SFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR-TFLLGVPFVALTATATEKV 175
+ L K + AVDEAHC+S+WGHDFR EY++L +LR + +P VALTATAT KV
Sbjct: 130 QVFEILPKLPLDRIAVDEAHCVSQWGHDFRPEYRKLHELRDKYKRPIPIVALTATATPKV 189
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILK---SVAGAGSII 232
DI +SL LK+P + SF R+NL + V+ S +EL++ +++ G I
Sbjct: 190 IQDISDSLGLKDPTLIKGSFYRENLRFSVRFPQNETSKENELLKLLIRGNFQKTENGKAI 249
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
+YC T + VE I LK+ G K G YH +RE+ + + V+VAT AFGMG+
Sbjct: 250 IYCATRQKVESIYNFLKKNGFKVGKYHAGRTDSSREKTQNGYSIGKTNVLVATNAFGMGL 309
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ 352
D P+VR ++HY P +LESYYQE+GR GRDG +S C L+Y ++ +F G+ EN
Sbjct: 310 DNPNVRLIVHYQIPASLESYYQEAGRAGRDGKSSNCVLFYHPADLVTQNFIIGK---ENN 366
Query: 353 RTAIMESLLAAQRYCLLTTCRR 374
R + L + Y + CR+
Sbjct: 367 RKGGVTLLSFVKEYAISNGCRQ 388
>gi|422005787|ref|ZP_16352953.1| DNA helicase [Leptospira santarosai serovar Shermani str. LT 821]
gi|417255536|gb|EKT85007.1| DNA helicase [Leptospira santarosai serovar Shermani str. LT 821]
Length = 621
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 160/382 (41%), Positives = 233/382 (60%), Gaps = 13/382 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKT-ALVV 59
+ S+LK+ +G S FR QK+ I+ ++ +D LV++ TG GKSL YQLP ++ G + LV+
Sbjct: 12 LESSLKEIWGMSRFRTGQKESIESVLNGKDTLVILPTGGGKSLVYQLPAVLEGSSLTLVI 71
Query: 60 SPLISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPI 116
SPLI+LM+DQV SLK +GI AE+ S Q D + ++A TG ++L+++PEKA +
Sbjct: 72 SPLIALMKDQVDSLKAKGIAAEYCNSTQDDLEQLRILSRAATGKIRILYLSPEKA--LSR 129
Query: 117 SFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR-TFLLGVPFVALTATATEKV 175
+ L K + AVDEAHC+S+WGHDFR EY++L +LR + +P VALTATAT KV
Sbjct: 130 QVFEILPKLPLDRIAVDEAHCVSQWGHDFRPEYRKLHELRDKYKRPIPIVALTATATPKV 189
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILK---SVAGAGSII 232
DI +SL LK+P + SF R+NL + V+ S +EL++ +++ G I
Sbjct: 190 IQDISDSLGLKDPTLIKGSFYRENLRFSVRFPQNETSKENELLKLLIRGNFQKTENGKAI 249
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
+YC T + VE I LK+ G K G YH +RE+ + + V+VAT AFGMG+
Sbjct: 250 IYCATRQKVESIYNFLKKNGFKVGKYHAGRTDSSREKTQNGYSIGKTNVLVATNAFGMGL 309
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ 352
D P+VR ++HY P +LESYYQE+GR GRDG +S C L+Y ++ +F G+ EN
Sbjct: 310 DNPNVRLIVHYQIPASLESYYQEAGRAGRDGKSSNCVLFYHPADLVTQNFIIGK---ENN 366
Query: 353 RTAIMESLLAAQRYCLLTTCRR 374
R + L + Y + CR+
Sbjct: 367 RKGGVTLLSFIKEYAISNGCRQ 388
>gi|410450850|ref|ZP_11304880.1| ATP-dependent DNA helicase, RecQ family [Leptospira sp. Fiocruz
LV3954]
gi|410015393|gb|EKO77495.1| ATP-dependent DNA helicase, RecQ family [Leptospira sp. Fiocruz
LV3954]
Length = 621
Score = 287 bits (735), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 160/382 (41%), Positives = 233/382 (60%), Gaps = 13/382 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKT-ALVV 59
+ S+LK+ +G S FR QK+ I+ ++ +D LV++ TG GKSL YQLP ++ G + LV+
Sbjct: 12 LESSLKEIWGMSRFRTGQKESIESVLNGKDTLVILPTGGGKSLVYQLPAVLEGSSLTLVI 71
Query: 60 SPLISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPI 116
SPLI+LM+DQV SLK +GI AE+ S Q D + ++A TG ++L+++PEKA +
Sbjct: 72 SPLIALMKDQVDSLKAKGIAAEYCNSTQDDLEQLRILSRAATGKIRILYLSPEKA--LSR 129
Query: 117 SFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR-TFLLGVPFVALTATATEKV 175
+ L K + AVDEAHC+S+WGHDFR EY++L +LR + +P VALTATAT KV
Sbjct: 130 QVFEILPKLPLDRIAVDEAHCVSQWGHDFRPEYRKLHELRDKYKRPIPIVALTATATPKV 189
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILK---SVAGAGSII 232
DI +SL LK+P + SF R+NL + V+ S +EL++ +++ G I
Sbjct: 190 IQDISDSLGLKDPTLIKGSFYRENLRFSVRFPQNETSKENELLKLLIRGNFQKTENGKAI 249
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
+YC T + VE I LK+ G K G YH +RE+ + + V+VAT AFGMG+
Sbjct: 250 IYCATRQKVESIYNFLKKNGFKVGKYHAGRTDSSREKTQNGYSIGKTNVLVATNAFGMGL 309
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ 352
D P+VR ++HY P +LESYYQE+GR GRDG +S C L+Y ++ +F G+ EN
Sbjct: 310 DNPNVRLIVHYQIPASLESYYQEAGRAGRDGKSSNCVLFYHPADLVTQNFIIGK---ENN 366
Query: 353 RTAIMESLLAAQRYCLLTTCRR 374
R + L + Y + CR+
Sbjct: 367 RKGGVTLLSFVKEYAISNGCRQ 388
>gi|418745839|ref|ZP_13302174.1| ATP-dependent DNA helicase, RecQ family [Leptospira santarosai str.
CBC379]
gi|410793223|gb|EKR91143.1| ATP-dependent DNA helicase, RecQ family [Leptospira santarosai str.
CBC379]
Length = 621
Score = 287 bits (735), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 160/382 (41%), Positives = 233/382 (60%), Gaps = 13/382 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKT-ALVV 59
+ S+LK+ +G S FR QK+ I+ ++ +D LV++ TG GKSL YQLP ++ G + LV+
Sbjct: 12 LESSLKEIWGMSRFRTGQKESIESVLNGKDTLVILPTGGGKSLVYQLPAVLEGSSLTLVI 71
Query: 60 SPLISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPI 116
SPLI+LM+DQV SLK +GI AE+ S Q D + ++A TG ++L+++PEKA +
Sbjct: 72 SPLIALMKDQVDSLKAKGIAAEYCNSTQDDLEQLRILSRAATGKIRILYLSPEKA--LSR 129
Query: 117 SFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR-TFLLGVPFVALTATATEKV 175
+ L K + AVDEAHC+S+WGHDFR EY++L +LR + +P VALTATAT KV
Sbjct: 130 QVFEILPKLPLDRIAVDEAHCVSQWGHDFRPEYRKLHELRDKYKRPIPIVALTATATPKV 189
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILK---SVAGAGSII 232
DI +SL LK+P + SF R+NL + V+ S +EL++ +++ G I
Sbjct: 190 IQDISDSLGLKDPTLIKGSFYRENLRFSVRFPQNETSKENELLKLLIRGNFQKTENGKAI 249
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
+YC T + VE I LK+ G K G YH +RE+ + + V+VAT AFGMG+
Sbjct: 250 IYCATRQKVESIYNFLKKNGFKVGKYHAGRTDSSREKTQNGYSIGKTNVLVATNAFGMGL 309
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ 352
D P+VR ++HY P +LESYYQE+GR GRDG +S C L+Y ++ +F G+ EN
Sbjct: 310 DNPNVRLIVHYQIPASLESYYQEAGRAGRDGKSSNCVLFYHPADLVTQNFIIGK---ENN 366
Query: 353 RTAIMESLLAAQRYCLLTTCRR 374
R + L + Y + CR+
Sbjct: 367 RKGGVTLLSFVKEYAISNGCRQ 388
>gi|386817166|ref|ZP_10104384.1| ATP-dependent DNA helicase RecQ [Thiothrix nivea DSM 5205]
gi|386421742|gb|EIJ35577.1| ATP-dependent DNA helicase RecQ [Thiothrix nivea DSM 5205]
Length = 630
Score = 287 bits (735), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 164/377 (43%), Positives = 225/377 (59%), Gaps = 12/377 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L +GY+ FR Q+D+I +++ RD L +M TG GKSLCYQ+P L +VVSPLI+
Sbjct: 11 LNNTYGYADFRLNQQDIIGSLLQGRDVLALMPTGGGKSLCYQIPALARDGVGIVVSPLIA 70
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSV-QTKAE--TGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV +L+Q GI A FL S +V Q + E G LL++ PE+ + +
Sbjct: 71 LMQDQVDALQQLGIRAAFLNSTLNYGTVLQVERELLEGEIDLLYVAPERLLGEKMLALLE 130
Query: 122 LLKA--GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
L + G+ LFA+DEAHC+S+WGHDFR EY+QL L G+P +ALTATA ++ R +I
Sbjct: 131 RLNSSVGIALFAIDEAHCVSQWGHDFRPEYQQLSVLAERFPGIPRIALTATADQRTRQEI 190
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKS-VAGAGSIIVYCMTI 238
I L+L+N V I SFDR N+ Y I +GQ+ +L + I + AG IVYC++
Sbjct: 191 IQQLRLQNADVYINSFDRPNIHY---TIRQGQNARQQLWRFIADNHPQDAG--IVYCLSR 245
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K VE+ + L + G A YH M + R E + F+R++ ++VAT+AFGMGIDKPDVR
Sbjct: 246 KKVEDTALWLAEQGRVALPYHAGMSADTRREHQQRFLREDGVIIVATIAFGMGIDKPDVR 305
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQ-TENQRTAIM 357
V H PK++E+YYQE+GR GRDG S W+ Y + ES +E Q+
Sbjct: 306 FVAHLSLPKSIEAYYQETGRAGRDGQPSNAWMAYGLQDVITLRQMMQESTASEQQKRVEH 365
Query: 358 ESLLAAQRYCLLTTCRR 374
L A C +TTCRR
Sbjct: 366 HKLQAMLGLCEMTTCRR 382
>gi|283787504|ref|YP_003367369.1| ATP-dependent DNA helicase [Citrobacter rodentium ICC168]
gi|282950958|emb|CBG90635.1| ATP-dependent DNA helicase [Citrobacter rodentium ICC168]
Length = 609
Score = 287 bits (735), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 223/375 (59%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+ +I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLI
Sbjct: 16 VLQETFGYQQFRPGQEAIIDTVMSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLI 75
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S QT V +G +LL++ PE+ ++ +F
Sbjct: 76 SLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRSGKIRLLYIAPER--LMLDNFLE 133
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA E R+DI+
Sbjct: 134 HLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTATADETTRLDIV 193
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 194 RLLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 248
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 249 VEDTAARLQSRGLSAAAYHAGLENHVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 308
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I
Sbjct: 309 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHK 367
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 368 LNAMGAFAEAQTCRR 382
>gi|167622376|ref|YP_001672670.1| ATP-dependent DNA helicase RecQ [Shewanella halifaxensis HAW-EB4]
gi|167352398|gb|ABZ75011.1| ATP-dependent DNA helicase RecQ [Shewanella halifaxensis HAW-EB4]
Length = 607
Score = 287 bits (735), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 156/381 (40%), Positives = 228/381 (59%), Gaps = 19/381 (4%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ STL+ FGY FR Q++VI++I +DCLV+M TG GKSLCYQLP L+ +VVS
Sbjct: 13 LSSTLQSVFGYRTFREGQREVIEQICAGQDCLVIMPTGGGKSLCYQLPALIMPGLTVVVS 72
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSA-QTDSSVQT--KAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV SL Q G++A +L S+ + S+Q K G +LL+++PE+ ++ S
Sbjct: 73 PLISLMKDQVDSLIQTGVSAAYLNSSLPREESLQVLQKMRYGELKLLYVSPER--LLQAS 130
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
F +L + V LFA+DEAHCIS+WGHDFR EY L +LR VP +ALTATA + R
Sbjct: 131 FIDRLHELNVSLFAIDEAHCISQWGHDFRPEYAALGRLRQQFPQVPIMALTATADKATRA 190
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGV----KVINRGQSFVDELVQEILKSVAGAGSIIV 233
DI L + P+ + SFDR N+ Y V N+ + FVD S IV
Sbjct: 191 DICERLTI-TPHSLLTSFDRPNIRYTVAEKLNAANQLRQFVD---------AQNGTSGIV 240
Query: 234 YCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGID 293
YC + + V+E+++ L+ G +A YH + R + F++D++ ++VAT+AFGMGI+
Sbjct: 241 YCSSRRRVDEVAERLRLQGHQAEAYHAGKTQEERADVQDRFLKDQLDIVVATVAFGMGIN 300
Query: 294 KPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQR 353
K +VR+V+HY PK++E+YYQE+GR GRDG+ S + + ++ + +S+ Q+
Sbjct: 301 KSNVRYVVHYDIPKSVEAYYQETGRAGRDGLDSEALMLFDPADIGRVRHLIEQSEPGPQQ 360
Query: 354 TAIMESLLAAQRYCLLTTCRR 374
L + TCRR
Sbjct: 361 QVEFHKLNTMAAFAEAQTCRR 381
>gi|422784511|ref|ZP_16837291.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW10509]
gi|323974402|gb|EGB69530.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW10509]
Length = 609
Score = 287 bits (735), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 155/374 (41%), Positives = 224/374 (59%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ DCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIIDTVLSGSDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENDVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|423482562|ref|ZP_17459252.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG6X1-2]
gi|401143866|gb|EJQ51400.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG6X1-2]
Length = 705
Score = 287 bits (735), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 153/372 (41%), Positives = 225/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDILIQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LMDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
++L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 STLEINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDEI VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLGKAGVSVSKYHAGMSDHDRNEQQELFLRDEISVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSECILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|365972647|ref|YP_004954208.1| ATP-dependent DNA helicase recQ [Enterobacter cloacae EcWSU1]
gi|365751560|gb|AEW75787.1| ATP-dependent DNA helicase recQ [Enterobacter cloacae EcWSU1]
Length = 630
Score = 287 bits (735), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 156/375 (41%), Positives = 223/375 (59%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L + FGY FRP Q+ +I+ ++E RDCLVVM TG GKSLCYQ+P LV +VVSPLI
Sbjct: 37 VLHETFGYQQFRPGQETIIETVLEGRDCLVVMPTGGGKSLCYQVPALVLNGLTVVVSPLI 96
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S+QT V TG +LL++ PE+ ++ +F
Sbjct: 97 SLMKDQVDQLLANGVAAACLNSSQTREQQQEVMAGCRTGQVRLLYIAPER--LMLDNFLD 154
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 155 HLSHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPELPFMALTATADDTTRQDIV 214
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + ++SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 215 RLLGLNDPLIQVSSFDRPNIRY---MLMEKFKPLDQLLRYVQEQRGKSG--IIYCNSRAK 269
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 270 VEDTAARLQNRGFSAAAYHAGLENAVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 329
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I
Sbjct: 330 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHK 388
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 389 LNAMGAFAEAQTCRR 403
>gi|374629362|ref|ZP_09701747.1| ATP-dependent DNA helicase, RecQ family [Methanoplanus limicola DSM
2279]
gi|373907475|gb|EHQ35579.1| ATP-dependent DNA helicase, RecQ family [Methanoplanus limicola DSM
2279]
Length = 1165
Score = 287 bits (735), Expect = 5e-75, Method: Composition-based stats.
Identities = 153/374 (40%), Positives = 227/374 (60%), Gaps = 11/374 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK+ FG+S F P+QK +I I+ RD L ++ATGSGKS+CYQLP L+ LV+SPL +
Sbjct: 19 LKEKFGHSEFLPFQKKIIDDILNGRDTLGILATGSGKSICYQLPALLLDGITLVISPLKA 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS--SVQTKAETGYFQLLFMTPEKACIIPISFWSKL 122
LM+DQV +LK GI + S+ ++ +AE ++LF++PE+ + F S L
Sbjct: 79 LMKDQVDNLKINGIPVATINSSNYGKHWEIKKRAENQEIKILFVSPER--VTNNDFISFL 136
Query: 123 LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINS 182
K + L AVDEAHCIS WGH+FR EY+++ LR VP +ALTATA +VR DII
Sbjct: 137 KKLKISLIAVDEAHCISMWGHNFRPEYREIRVLRDTFPDVPIIALTATAIPEVRNDIIKQ 196
Query: 183 LKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVE 242
L+L++P V + SF+R+NL+Y VK + + ++++Q + ++ G I+YC++ K E
Sbjct: 197 LELRDPNVYVGSFNRENLYYYVKEKKKAK---EQILQYLNENHGSCG--IIYCLSRKTTE 251
Query: 243 EISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIH 302
EI+ L+ G A +H + + E F+ + ++ +T+AFGMG+DKPD+R VIH
Sbjct: 252 EIAGFLRNNGFNAKPFHANLQEDVKRETQEEFLYGKTPIICSTVAFGMGVDKPDIRFVIH 311
Query: 303 YGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAK--GDFYCGESQTENQRTAIMESL 360
Y PK LESYYQE+GR GRD S C +Y+ +F+K Y S +R+ M+ +
Sbjct: 312 YDPPKDLESYYQETGRAGRDRENSDCIFFYSLGDFSKIRNMVYEENSGNSGRRSIAMKRI 371
Query: 361 LAAQRYCLLTTCRR 374
+C + CRR
Sbjct: 372 NDLINFCETSQCRR 385
>gi|417781079|ref|ZP_12428834.1| ATP-dependent DNA helicase, RecQ family [Leptospira weilii str.
2006001853]
gi|410778720|gb|EKR63343.1| ATP-dependent DNA helicase, RecQ family [Leptospira weilii str.
2006001853]
Length = 624
Score = 287 bits (735), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 163/383 (42%), Positives = 235/383 (61%), Gaps = 15/383 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKT-ALVV 59
+ S+LK+ +G S FR QK+ I+ ++ +D LV++ TG GKSL YQLP ++ + LV+
Sbjct: 12 LESSLKEIWGMSRFRTGQKESIESVLSGKDTLVILPTGGGKSLIYQLPAVLDRSSLTLVI 71
Query: 60 SPLISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPI 116
SPLI+LM+DQV SLK +GI AE+ S Q D + ++A TG ++L+++PEKA +
Sbjct: 72 SPLIALMKDQVDSLKAKGIAAEYCNSTQDDLEQLRILSRASTGKIRILYLSPEKA--LSR 129
Query: 117 SFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR-TFLLGVPFVALTATATEKV 175
+ L K + AVDEAHC+S+WGHDFR EY++L +LR + +P VALTATAT KV
Sbjct: 130 QVFEILPKLPLGRIAVDEAHCVSQWGHDFRPEYRKLYELRDKYQRQIPIVALTATATPKV 189
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILK---SVAGAGSII 232
DI NSL LKNP + SF R+NL + V+ S +EL++ +++ +G I
Sbjct: 190 IQDISNSLGLKNPTLIKGSFYRENLNFSVRFPQNETSKENELLKLLIRGNFQKTESGKAI 249
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
+YC T + VE LK+ G K G YH +RE+ + + ++VAT AFGMG+
Sbjct: 250 IYCATRQKVESTYNFLKKNGFKVGKYHAGRTDSSREKTQNGYNIGKTNILVATNAFGMGL 309
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ 352
D PDVR V+H+ P +LESYYQE+GR GRDG +S C L+Y S+ +F G+ EN
Sbjct: 310 DNPDVRLVVHFQIPASLESYYQEAGRAGRDGKSSNCILFYHPSDLVTQNFIIGK---ENN 366
Query: 353 RTAIMESLLA-AQRYCLLTTCRR 374
R E+LL+ + Y + CR+
Sbjct: 367 RKG-GETLLSFVKEYAISDRCRQ 388
>gi|423203715|ref|ZP_17190283.1| ATP-dependent DNA helicase RecQ [Aeromonas veronii AER39]
gi|404612493|gb|EKB09554.1| ATP-dependent DNA helicase RecQ [Aeromonas veronii AER39]
Length = 611
Score = 287 bits (735), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 150/376 (39%), Positives = 230/376 (61%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
++ L+ FGY FRP Q ++I++I+ RD LV+ TG GKSLCYQ+P L+ +VVSP
Sbjct: 17 LALLQAVFGYQQFRPGQLEIIEQIVAGRDALVLKPTGGGKSLCYQIPALLRPGLGVVVSP 76
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT-DSSVQTKA--ETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV SL+ G+ A ++ SA + + +Q A G +L++++PE+ ++ F
Sbjct: 77 LISLMKDQVDSLRANGVAAVYINSALSREEMIQNFAAMRRGEIKLVYVSPER--LLQHEF 134
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+L + + LFA+DEAHC+S+WGHDFR EY L +L+ + VP VALTATA E R D
Sbjct: 135 MDRLAELPLGLFAIDEAHCVSQWGHDFRPEYAALGRLKQWFPQVPVVALTATADEATRSD 194
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
+++ L+L +P++ ASFDR N+ Y + + + ++ ++L++ + G IVYC +
Sbjct: 195 MLHRLELNDPFIHTASFDRPNIRYSL--VEKFKA-AEQLLRYVQSQKGNCG--IVYCSSR 249
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VEE+++ L + G KA YH + + R++ F++D+I ++VAT+AFGMGIDKP+VR
Sbjct: 250 NRVEEVAERLSRHGCKAAPYHAGLPLEQRQQTQDAFLKDDIEIVVATVAFGMGIDKPNVR 309
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+HY PK +ESYYQE+GR GRDG + L Y ++ + + Q
Sbjct: 310 FVVHYDIPKNIESYYQETGRAGRDGTPAEALLLYDPADIGRVRRLLDNIENPQQLQVEQY 369
Query: 359 SLLAAQRYCLLTTCRR 374
L + TCRR
Sbjct: 370 KLNVMAAFAEAQTCRR 385
>gi|46201335|ref|ZP_00055249.2| COG0514: Superfamily II DNA helicase [Magnetospirillum
magnetotacticum MS-1]
Length = 607
Score = 287 bits (735), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 158/374 (42%), Positives = 215/374 (57%), Gaps = 7/374 (1%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK FG+ FR Q++VI+ ++E D LV+M TG+GKSLCYQ+P L A+VVSPLI+
Sbjct: 8 LKTVFGFPAFRGQQEEVIRHVVEGGDALVLMPTGAGKSLCYQVPALCRDGVAIVVSPLIA 67
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LMQ+QV +L Q G+ A L SA++ ++ + + G L+++ PE+ ++P F +
Sbjct: 68 LMQNQVEALNQLGVRAAALNSARSPDEARVIERRMQAGELDLVYVAPER-LVLP-GFLAL 125
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + LFA+DEAHC+S+WGHDFR EY QL L VP +ALTATA R DI
Sbjct: 126 LEDCRIALFAIDEAHCVSQWGHDFRPEYLQLALLHERFPSVPRIALTATADGPTRKDIAE 185
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L+ IA FDR N+ Y + N + + + E GA S IVYC++ V
Sbjct: 186 RLNLQEGRQFIAGFDRPNIRYRIATKNNAREQLARFL-EAEHGGPGAESGIVYCLSRAKV 244
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
EE + L G A YH + R + F+R+E VMVAT+AFGMGIDKPDVR V
Sbjct: 245 EETASWLAGKGYTALAYHAGLDQPVRAANQQRFLREEGIVMVATIAFGMGIDKPDVRFVA 304
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAK-GDFYCGESQTENQRTAIMESL 360
H PK+LE+YYQE+GR GRDG+ + W+ Y + K G F ++ Q+ + L
Sbjct: 305 HLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLEDVGKLGQFIASSQASDAQKRIERQKL 364
Query: 361 LAAQRYCLLTTCRR 374
A C T CRR
Sbjct: 365 NALLGLCETTRCRR 378
>gi|219121078|ref|XP_002185770.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209582619|gb|ACI65240.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 449
Score = 287 bits (734), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 176/409 (43%), Positives = 230/409 (56%), Gaps = 55/409 (13%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ TL+ YFGY FRP Q VI+ +++ RD V ATGSGKSL YQ+P L T A+VVS
Sbjct: 2 LTKTLQDYFGYPAFRPGQFPVIEVVLQGRDAAVFWATGSGKSLNYQIPALHTDTVAIVVS 61
Query: 61 PLISLMQDQVMSLK----------QRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEK 110
PLISLMQDQ L Q+ + A FLGS+QTD + KA G + L+++TPEK
Sbjct: 62 PLISLMQDQTHKLNFLSASSASGTQKPV-ATFLGSSQTDPDEEAKALRGEYNLIYVTPEK 120
Query: 111 ACIIPISFWSKLLK-----AGVCLFAVDEAHCISEWGHDFRLEYKQL-DKLRTF--LLGV 162
++ F L K + L A+DE+HC+SEWGHDFR ++ + LRT L +
Sbjct: 121 --LVTSEFLQALEKLHKDYKPIRLIAIDESHCVSEWGHDFRPSFRSVGPSLRTHDVLRQI 178
Query: 163 PFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEIL 222
P +ALTATA +V+ DI+ SL+++NP V SFDR NL VK
Sbjct: 179 PLLALTATAVPRVQEDILTSLQMENPLVVRQSFDRTNLEIIVKP---------------- 222
Query: 223 KSVAGAGSI-----------IVYCMTIKDVEEISKALK---QLGVKAGTYHGQMGSKARE 268
KS G GSI IVY T V+ I+ L+ V+ YH M ++ R
Sbjct: 223 KSTGGTGSIPSAFQSLLADTIVYAPTRSQVDNIASYLQTHAPSNVRIEAYHAGMNAEDRT 282
Query: 269 EAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVC 328
AHR F+ V+VAT+AFGMGI KPD R VIH+G PKTLE YYQ+ GR GRDG+ + C
Sbjct: 283 TAHRNFLTGVTTVIVATVAFGMGIGKPDTRRVIHFGPPKTLEEYYQQIGRAGRDGLPATC 342
Query: 329 WLYYARSNFAK--GDFYCGESQTENQRTAIMESLLAAQRYCL-LTTCRR 374
LY A S+ + DFY G + + A +ES+ A +R+ L TCRR
Sbjct: 343 ILYVASSDLDRYQSDFYLGGLHGK-AKEATLESMEAMKRFSLDAETCRR 390
>gi|330827839|ref|YP_004390791.1| ATP-dependent DNA helicase RecQ [Aeromonas veronii B565]
gi|406674905|ref|ZP_11082097.1| ATP-dependent DNA helicase RecQ [Aeromonas veronii AMC35]
gi|423211489|ref|ZP_17198022.1| ATP-dependent DNA helicase RecQ [Aeromonas veronii AER397]
gi|328802975|gb|AEB48174.1| ATP-dependent DNA helicase RecQ [Aeromonas veronii B565]
gi|404613569|gb|EKB10590.1| ATP-dependent DNA helicase RecQ [Aeromonas veronii AER397]
gi|404628413|gb|EKB25195.1| ATP-dependent DNA helicase RecQ [Aeromonas veronii AMC35]
Length = 611
Score = 287 bits (734), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 150/376 (39%), Positives = 230/376 (61%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
++ L+ FGY FRP Q ++I++I+ RD LV+ TG GKSLCYQ+P L+ +VVSP
Sbjct: 17 LALLQAVFGYQQFRPGQLEIIEQIVAGRDALVLKPTGGGKSLCYQIPALLRPGLGVVVSP 76
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT-DSSVQTKA--ETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV SL+ G+ A ++ SA + + +Q A G +L++++PE+ ++ F
Sbjct: 77 LISLMKDQVDSLRANGVAAVYINSALSREEMIQNFAAMRRGEIKLVYVSPER--LLQHEF 134
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+L + + LFA+DEAHC+S+WGHDFR EY L +L+ + VP VALTATA E R D
Sbjct: 135 MDRLAELPLGLFAIDEAHCVSQWGHDFRPEYAALGRLKQWFPQVPVVALTATADEATRSD 194
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
+++ L+L +P++ ASFDR N+ Y + + + ++ ++L++ + G IVYC +
Sbjct: 195 MLHRLELNDPFIHTASFDRPNIRYSL--VEKFKA-AEQLLRYVQSQKGNCG--IVYCSSR 249
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VEE+++ L + G KA YH + + R++ F++D+I ++VAT+AFGMGIDKP+VR
Sbjct: 250 NRVEEVAERLSRHGCKAAPYHAGLPLEQRQQTQDAFLKDDIEIVVATVAFGMGIDKPNVR 309
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+HY PK +ESYYQE+GR GRDG + L Y ++ + + Q
Sbjct: 310 FVVHYDIPKNIESYYQETGRAGRDGTPAEALLLYDPADIGRVRRLLDNIENPQQLQVEQY 369
Query: 359 SLLAAQRYCLLTTCRR 374
L + TCRR
Sbjct: 370 KLNVMAAFAEAQTCRR 385
>gi|397781220|ref|YP_006545693.1| ATP-dependent DNA helicase RecQ [Methanoculleus bourgensis MS2]
gi|396939722|emb|CCJ36977.1| ATP-dependent DNA helicase RecQ [Methanoculleus bourgensis MS2]
Length = 604
Score = 287 bits (734), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 163/376 (43%), Positives = 226/376 (60%), Gaps = 11/376 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
S L+KYFGY+ F P+Q+++I ++ +RD L VMATG GKSLCYQLP LV G +VVSPL
Sbjct: 6 SILEKYFGYTSFLPHQEEIIDAVLAQRDVLAVMATGGGKSLCYQLPALVFGGLTVVVSPL 65
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFW 119
I+LM+DQV L+ GI A + S+ ++ G ++L+++PE+A + P F
Sbjct: 66 IALMKDQVDGLRANGIPAATINSSLGYGERRIIERVILEGRIRVLYVSPERA-VQPF-FL 123
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
S L KA V L A+DEAHCIS WGH+FR EY++L L+ VP +ALTATA V+ DI
Sbjct: 124 SLLKKADVRLIAIDEAHCISMWGHNFRPEYRRLRVLKERFPAVPVIALTATAIPAVQDDI 183
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
L LKNP + SF+R NL Y +V+ + + F LV+ + + AG I+YC + K
Sbjct: 184 AKQLALKNPARFVGSFNRTNLTY--RVVPKTRYF-PRLVRYLNEHRDDAG--IIYCFSQK 238
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
E++++ L+ G A YH + R+E F ++ ++ AT+AFGMGIDKPDVR
Sbjct: 239 ATEDLAEKLRGKGFSALPYHAGLPDAVRDEHQEAFSHGDVGIICATVAFGMGIDKPDVRF 298
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYC-GESQTENQRTAIME 358
VIH PK LESYYQE+GR GRDG + C L+Y+R ++ + E ++ A
Sbjct: 299 VIHTDLPKDLESYYQETGRAGRDGEPADCILFYSRGDYNTIRYLIEKECADATRKDAAYR 358
Query: 359 SLLAAQRYCLLTTCRR 374
A YC T CRR
Sbjct: 359 KAGAMLDYCETTGCRR 374
>gi|372209002|ref|ZP_09496804.1| ATP-dependent DNA helicase RecQ [Flavobacteriaceae bacterium S85]
Length = 734
Score = 287 bits (734), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 156/385 (40%), Positives = 235/385 (61%), Gaps = 25/385 (6%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ + LKKYFG++ F+ Q+DVI+ + E +D V+M TG GKSLCYQLP L+ TA+VVS
Sbjct: 8 LYTPLKKYFGFNKFKGLQEDVIRSVAEGKDTFVIMPTGGGKSLCYQLPALMKEGTAIVVS 67
Query: 61 PLISLMQDQVMSLKQRGIN-----AEFLGSAQTDSSV-QTKAE--TGYFQLLFMTPEKAC 112
PLI+LM++QV ++ RGI+ A L S+ + V + K++ G +LL++ PE
Sbjct: 68 PLIALMKNQVDAI--RGISDNPGIAHVLNSSLNKTEVAKVKSDIVNGVTKLLYVAPE--S 123
Query: 113 IIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATAT 172
+ + L K + FA+DEAHCISEWGHDFR EY+ L ++ T + VP + LTATAT
Sbjct: 124 LTKDEYVDFLKKQKISFFAIDEAHCISEWGHDFRPEYRNLRRIITRIGDVPIIGLTATAT 183
Query: 173 EKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSII 232
KV+ DII +L + N ASF+R NLFY V+ + + ++++ I + + +G +
Sbjct: 184 PKVQEDIIKTLGMTNANTFKASFNRPNLFYEVRP--KTKDVTSDIIRFIRQRLGKSG--V 239
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
+YC++ K VEEI++ L+ G+ A YH + +K R + +F+ +++ V+VAT+AFGMGI
Sbjct: 240 IYCLSRKKVEEIAQTLQVNGISALPYHAGLDAKTRAKHQDMFLMEDVDVIVATIAFGMGI 299
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ 352
DKPDVR VIH+ PK+LESYYQE+GR GRD C +Y+ + K + + Q
Sbjct: 300 DKPDVRFVIHHDIPKSLESYYQETGRAGRDDGEGYCLAFYSYKDIEKLEKFMANKPVSEQ 359
Query: 353 R---------TAIMESLLAAQRYCL 368
E+ ++ +RY L
Sbjct: 360 ELGHALLQEVVGYAETSMSRRRYLL 384
>gi|385331459|ref|YP_005885410.1| ATP-dependent DNA helicase RecQ [Marinobacter adhaerens HP15]
gi|311694609|gb|ADP97482.1| ATP-dependent DNA helicase RecQ [Marinobacter adhaerens HP15]
Length = 622
Score = 287 bits (734), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 159/375 (42%), Positives = 215/375 (57%), Gaps = 12/375 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L + FGY FRP Q D+I+ + E RD LV+M TG GKSLCYQ+P LV TA+V+SPLI+
Sbjct: 26 LHEVFGYESFRPLQGDIIREVSEGRDALVLMPTGGGKSLCYQVPALVRSGTAIVISPLIA 85
Query: 65 LMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV +LK+ G+ A FL S + + + TG LL+ PE+ +I
Sbjct: 86 LMQDQVAALKELGVRAAFLNSTMDFEQARATEYALMTGELDLLYCAPER--LIQPRTIEL 143
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L A + LFA+DEAHC+S+WGHDFR +Y QL L GVP +ALTATA E+ R +I
Sbjct: 144 LHDASISLFAIDEAHCVSQWGHDFRSDYLQLSMLAEQFPGVPRIALTATADERTRKEIAE 203
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKV-INRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L ++ FDR N+ Y + IN + +D +K+ IVYC++
Sbjct: 204 RLSLTEARHFVSGFDRPNIQYRIAPKINANKQLLD-----FIKAEHEGDCGIVYCLSRNK 258
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+ +K L Q G A YH + S+ R F+R++ ++VAT+AFGMGIDKPDVR V
Sbjct: 259 VDATAKTLAQKGYTALPYHAGLSSEQRAHHQERFLREDGVIIVATIAFGMGIDKPDVRFV 318
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ-RTAIMES 359
H PK+LE+YYQE+GR GRDG S W+ Y + K SQ + + +
Sbjct: 319 AHLDLPKSLEAYYQETGRAGRDGKPSTAWMVYGLQDVIKLRQMLESSQGNDHFKRVERQK 378
Query: 360 LLAAQRYCLLTTCRR 374
L A C +T+CRR
Sbjct: 379 LDAMLGLCEVTSCRR 393
>gi|146313606|ref|YP_001178680.1| ATP-dependent DNA helicase RecQ [Enterobacter sp. 638]
gi|145320482|gb|ABP62629.1| ATP-dependent DNA helicase RecQ [Enterobacter sp. 638]
Length = 609
Score = 287 bits (734), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 155/374 (41%), Positives = 223/374 (59%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+ +I+ ++E RDCLVVM TG GKSLCYQ+P LV +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQETIIETVLEGRDCLVVMPTGGGKSLCYQVPALVLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A + S QT V TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLLANGVAAACINSTQTREQQQDVMAGCRTGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P+ ++SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPFSQVSSFDRPNIRY---MLMEKFKPLDQLLRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQTRGFSAAAYHAGLENHIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQMLDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|83313353|ref|YP_423617.1| superfamily II DNA helicase [Magnetospirillum magneticum AMB-1]
gi|82948194|dbj|BAE53058.1| Superfamily II DNA helicase [Magnetospirillum magneticum AMB-1]
Length = 620
Score = 287 bits (734), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 158/374 (42%), Positives = 215/374 (57%), Gaps = 7/374 (1%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK FG+ FR Q++VI+ ++E D LV+M TG+GKSLCYQ+P L A+VVSPLI+
Sbjct: 13 LKTVFGFPAFRGQQEEVIRHVVEGGDALVLMPTGAGKSLCYQVPALCRDGVAIVVSPLIA 72
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LMQ+QV +L Q G+ A L SA++ ++ + + G L+++ PE+ ++P F S
Sbjct: 73 LMQNQVEALTQLGVRAAALNSARSPDEARVIERRMQAGELDLVYVAPER-LVLP-GFLSL 130
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + LFA+DEAHC+S+WGHDFR EY QL L VP +ALTATA R DI
Sbjct: 131 LEDCRIALFAIDEAHCVSQWGHDFRPEYLQLALLHERFPAVPRIALTATADGPTRRDIAE 190
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L++ +A FDR N+ Y + N + + + E GA S IVYC++ V
Sbjct: 191 RLNLQDGRQFVAGFDRPNIRYRIAAKNNAREQLARFI-EAEHGGPGADSGIVYCLSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
EE + L G A YH + R F+R++ VMVAT+AFGMGIDKPDVR V
Sbjct: 250 EETAAWLAGKGYTALAYHAGLDQSVRAGNQERFLREDGIVMVATIAFGMGIDKPDVRFVA 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAK-GDFYCGESQTENQRTAIMESL 360
H PK+LE+YYQE+GR GRDG + W+ Y + AK G F ++ Q+ + L
Sbjct: 310 HLDLPKSLEAYYQETGRAGRDGQPADAWMAYGLEDVAKLGQFIASSQASDAQKRIEWQKL 369
Query: 361 LAAQRYCLLTTCRR 374
A C T CRR
Sbjct: 370 NALLGLCETTRCRR 383
>gi|363583268|ref|ZP_09316078.1| RecQ-like DEAD box helicase [Flavobacteriaceae bacterium HQM9]
Length = 631
Score = 287 bits (734), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 145/329 (44%), Positives = 210/329 (63%), Gaps = 11/329 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LKK++GY FRP Q ++IQ +I+K+D LV+M TG GKS+CYQ+P L++ LV+SPL++
Sbjct: 8 LKKFWGYDRFRPKQLEIIQSVIDKKDTLVLMPTGGGKSICYQVPALISNGICLVISPLVA 67
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIPISFWSK 121
LMQDQV LK+RGI A L S + S + + G ++ L+++PE+ + +
Sbjct: 68 LMQDQVSHLKERGIKAMSLASGTSFSDLDVLLDNCIHGNYKFLYVSPERLQQEIVK--ER 125
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
+ K V L AVDEAHCIS+WGHDFR Y QL+K+R + P +ALTATAT+ V+ DII
Sbjct: 126 IQKMNVSLIAVDEAHCISQWGHDFRPAYLQLNKVRELVPNTPVIALTATATKTVQQDIIE 185
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L K P S+ R+NL YG+ + + + ++V G+ IVY K
Sbjct: 186 QLAFKTPNFFKTSYQRRNLSYGIYKTSDKKHILLQIVNR------QKGATIVYVPRRKST 239
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+I+ L + ++A TYHG + SK ++ +L++ +E++VMVAT AFGMGIDKPDVR V+
Sbjct: 240 EKIAAYLSENHIRAVTYHGGLHSKTKQSNFKLWVNNEVQVMVATNAFGMGIDKPDVRTVV 299
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWL 330
H P+++ESY+QE+GR GRDG + L
Sbjct: 300 HMHIPQSIESYFQEAGRAGRDGKPAFALL 328
>gi|194335662|ref|YP_002017456.1| ATP-dependent DNA helicase RecQ [Pelodictyon phaeoclathratiforme
BU-1]
gi|194308139|gb|ACF42839.1| ATP-dependent DNA helicase RecQ [Pelodictyon phaeoclathratiforme
BU-1]
Length = 599
Score = 287 bits (734), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 159/377 (42%), Positives = 223/377 (59%), Gaps = 10/377 (2%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M TL+K FG+ FRP Q+ V++ I++KRD L +M TG GKSLCYQLP ++ T +V+S
Sbjct: 1 MFDTLRKVFGFHEFRPNQERVVRAILDKRDVLAIMPTGGGKSLCYQLPAVMMEGTCMVIS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPIS 117
PLI+LM+DQV + GI A FL S+Q V + +G LL++ PE+ I
Sbjct: 61 PLIALMKDQVDGARANGIRAAFLNSSQNPDERDEVLQRLLSGKLDLLYLAPER--FILSH 118
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
F L + + + +DEAHCISEWGHDFR +Y L L T G+P A TATAT +V+
Sbjct: 119 FREILGQVQLSMAVIDEAHCISEWGHDFRPDYLSLSDLVTLFAGIPVAAFTATATTRVQQ 178
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI++ L L+NP + ASFDR NL Y V R + V+ + +LKS G II Y +
Sbjct: 179 DILDKLALRNPLIVRASFDRPNLLYDV----RFKDNVEAQLLSLLKSNPGKAGII-YRTS 233
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K V + + L++ G++A YH + R+ FIRDE V+VAT+AFGMGIDK ++
Sbjct: 234 RKSVSDTATMLQKKGIRALPYHAGLSDAERKGNQEAFIRDEAEVIVATIAFGMGIDKSNI 293
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIH PK++E+YYQE+GR GRDG + C L +A+ + K F+ E +R +
Sbjct: 294 RFVIHADLPKSIENYYQETGRAGRDGEPAQCTLLFAQGDIPKVRFFIDSIIDETERERAL 353
Query: 358 ESLLAAQRYCLLTTCRR 374
+L + + CRR
Sbjct: 354 GALSKVITFASTSVCRR 370
>gi|386287427|ref|ZP_10064600.1| ATP-dependent DNA helicase RecQ [gamma proteobacterium BDW918]
gi|385279559|gb|EIF43498.1| ATP-dependent DNA helicase RecQ [gamma proteobacterium BDW918]
Length = 715
Score = 287 bits (734), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 160/377 (42%), Positives = 223/377 (59%), Gaps = 9/377 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L+ +GY FR Q D++ +I+ D LV+M TG GKSLC+Q+P LV TA+V+SP
Sbjct: 17 LQVLQSVYGYESFRNQQADIVDHVIQGGDALVLMPTGGGKSLCFQVPALVREGTAIVISP 76
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTD---SSVQTKAETGYFQLLFMTPEKACIIPISF 118
LI+LMQDQVM+L+Q GI A FL S+ + V+ + G +LL++ PE+ ++P
Sbjct: 77 LIALMQDQVMALRQNGIKAAFLNSSLNGMEVNEVENQLMNGELELLYIAPER-LMMP-RM 134
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
L A + LFA+DEAHC+S+WGHDFR EY +L L P VALTATA + +
Sbjct: 135 LQLLDNAPLSLFAIDEAHCVSQWGHDFRPEYIKLTILHERFPNTPRVALTATADGPTQRE 194
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
II L L N V FDR N+ Y + N+G + + L++ IL G I VYC++
Sbjct: 195 IIERLSLHNARVFNDGFDRPNIRYRI-TENQGTAR-ENLLRFILNEHEGEAGI-VYCLSR 251
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K V+EI+ L G+ A YH M ++ R++ F+R++ ++VAT+AFGMGIDKPDVR
Sbjct: 252 KKVDEIALWLSGKGMTALPYHAGMSNEQRQQHQERFLREDGVIIVATIAFGMGIDKPDVR 311
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V H PK++E+YYQE+GR GRDG + W+ Y + G S E R + +
Sbjct: 312 FVAHLNLPKSIEAYYQETGRAGRDGQPADAWMAYGLQDVITLRQMQGNSGAEESRKRLEQ 371
Query: 359 SLLAAQ-RYCLLTTCRR 374
L A C LTTCRR
Sbjct: 372 HKLDAMLGLCELTTCRR 388
>gi|331649648|ref|ZP_08350730.1| ATP-dependent DNA helicase RecQ [Escherichia coli M605]
gi|331041518|gb|EGI13666.1| ATP-dependent DNA helicase RecQ [Escherichia coli M605]
Length = 609
Score = 287 bits (734), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 155/374 (41%), Positives = 224/374 (59%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RD LVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIIDTVLSGRDSLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|424775779|ref|ZP_18202769.1| ATP-dependent DNA helicase [Alcaligenes sp. HPC1271]
gi|422888879|gb|EKU31261.1| ATP-dependent DNA helicase [Alcaligenes sp. HPC1271]
Length = 608
Score = 287 bits (734), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 160/377 (42%), Positives = 225/377 (59%), Gaps = 10/377 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L++ FGY FR Q ++I+ +I+ D LV+M TG GKSLCYQ+P LV T +VVSP
Sbjct: 6 LEVLQEVFGYDSFRGSQHEIIETLIQGGDALVLMPTGGGKSLCYQIPALVRTGTGVVVSP 65
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQ---TDSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LI+LMQDQV +L + G+NA +L S Q T V+ + TG LL++ PE+ ++
Sbjct: 66 LIALMQDQVDALNELGVNAAYLNSTQDWQTAREVEREFLTGQLDLLYVAPER--LLTDRC 123
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
L + + LFA+DEAHC+S+WGHDFR EY LD L GVP VALTATAT+ R++
Sbjct: 124 LDLLARGQISLFAIDEAHCVSQWGHDFRPEYLGLDLLAQRWPGVPRVALTATATQLTRVE 183
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I LKL++ +ASFDR N+ Y + N + + +QE AG IVYC++
Sbjct: 184 IAQRLKLEDARHFVASFDRPNICYRIIEKNEVRKQLLSFIQEEHSGDAG----IVYCLSR 239
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE+ ++ L + G+ A YH + ++ R F+R+E VMVAT+AFGMG++KPDVR
Sbjct: 240 SRVEDTAEFLCKNGIHALPYHAGLDAQQRAINQARFLREEGVVMVATIAFGMGVNKPDVR 299
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTE-NQRTAIM 357
V H PK++E YYQE+GR GRDG A+ WL Y + + +SQ + R
Sbjct: 300 FVAHIDLPKSVEGYYQETGRAGRDGEAATAWLAYGLQDVVQLHRMINQSQGDAAHRRQQG 359
Query: 358 ESLLAAQRYCLLTTCRR 374
++L A C +CRR
Sbjct: 360 QALDAMLGLCETISCRR 376
>gi|374261468|ref|ZP_09620050.1| hypothetical protein LDG_6438 [Legionella drancourtii LLAP12]
gi|363538095|gb|EHL31507.1| hypothetical protein LDG_6438 [Legionella drancourtii LLAP12]
Length = 607
Score = 287 bits (734), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 152/376 (40%), Positives = 219/376 (58%), Gaps = 11/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
++ LK+YFG+ FR Q+D+I+ +I D LV+M TG GKSLCYQ+P LV +VVSP
Sbjct: 15 LTVLKEYFGFDSFRNPQEDIIKDVIAGNDVLVLMPTGGGKSLCYQIPSLVRPGVGIVVSP 74
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISF 118
LI+LM+DQV +L+ +GI A + S+ T V + LL++ PE+ +I SF
Sbjct: 75 LIALMEDQVTALRLQGIRAAYYNSSLTSEEAKKVLAQLHNAELDLLYIAPER--LISASF 132
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+L + + LFA+DEAHCIS+WGHDFR EY L L+ +P +ALTATA ++ R D
Sbjct: 133 LERLQECHISLFAIDEAHCISQWGHDFRPEYAALGLLKEHFPTIPIIALTATADKQTRQD 192
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L P IASF+R N+ Y V +++ +Q + + S I+YC T
Sbjct: 193 IVVKLNY-TPKKYIASFNRPNIHYKVVPKTNAAKQLNQFLQSVEQQ-----SGIIYCGTR 246
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE +++ L+ +G KA YH + K R+E LF D I ++VAT+AFGMGIDKP+VR
Sbjct: 247 NSVESLAEKLQDMGFKARAYHAGLSHKERKEVQNLFRYDRIDIVVATIAFGMGIDKPNVR 306
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V H+ PK +E YYQE+GR GRDG+ + L Y ++ A+ + + + QR
Sbjct: 307 FVAHHDLPKNIEGYYQETGRAGRDGLPAQALLLYDAADSARLRSWIINTPLDEQRRVETN 366
Query: 359 SLLAAQRYCLLTTCRR 374
L + + CRR
Sbjct: 367 KLNHMLAFAEASHCRR 382
>gi|294673710|ref|YP_003574326.1| ATP-dependent DNA helicase RecQ [Prevotella ruminicola 23]
gi|294473219|gb|ADE82608.1| ATP-dependent DNA helicase RecQ [Prevotella ruminicola 23]
Length = 607
Score = 287 bits (734), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 156/375 (41%), Positives = 226/375 (60%), Gaps = 15/375 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++YFGYS FR Q+++I+ +I D LV+M TG GKS+CYQ+P L +V+SPLIS
Sbjct: 7 LRQYFGYSSFRQNQEEIIRHVIAGNDALVLMPTGGGKSICYQIPALALPGITIVISPLIS 66
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L+ GI AE L S D+ ++ K G +LL+++PEK + + ++ +
Sbjct: 67 LMKDQVETLRSNGIEAEALNSGNDPTLDTVIRRKCLAGQIKLLYISPEK-LLAEMDYFMQ 125
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L+ + LFA+DEAHCIS WGHDFR EY QL LR VP +ALTATA + R DI+
Sbjct: 126 HLQ--ISLFAIDEAHCISHWGHDFRPEYTQLGVLREKFPNVPMMALTATADKITRQDILT 183
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDEL--VQEILKSVAGAGSIIVYCMTIK 239
LKL+N ++SFDR NL VK RG +++ + +K+ II YC++ K
Sbjct: 184 QLKLRNAREFVSSFDRPNLSLSVK---RGYKSAEKMHFILNFIKARPNDAGII-YCLSRK 239
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
E+++ L++ G+ A YH + S R + F D++ V+ AT+AFGMGIDK +VR
Sbjct: 240 TTEKVAADLRKKGINAAAYHAGLSSLERSQTQEQFKNDQLLVVCATIAFGMGIDKSNVRW 299
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIHY PK++ES+YQE GR GRDG + L+Y+ ++ + + +S Q+ M+
Sbjct: 300 VIHYNMPKSIESFYQEIGRAGRDGAPADTVLFYSLADIIQLTEFARQS---GQQDVNMDK 356
Query: 360 LLAAQRYCLLTTCRR 374
L Q Y CRR
Sbjct: 357 LKRMQEYAESNVCRR 371
>gi|163751804|ref|ZP_02159020.1| ATP-dependent DNA helicase RecQ [Shewanella benthica KT99]
gi|161328289|gb|EDP99450.1| ATP-dependent DNA helicase RecQ [Shewanella benthica KT99]
Length = 610
Score = 287 bits (734), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 151/381 (39%), Positives = 228/381 (59%), Gaps = 19/381 (4%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ S+L+ FGY FR Q++VI++I DCLV+M TG GKSLCYQLP L +VVS
Sbjct: 15 LSSSLQSVFGYRTFRKGQREVIEQICAGIDCLVIMPTGGGKSLCYQLPALQMPGLTIVVS 74
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTD---SSVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV SL+Q G+NA +L S+Q + + + +G +LL+++PE+ ++ S
Sbjct: 75 PLISLMKDQVDSLQQMGVNAGYLNSSQAGEERARILREMHSGELKLLYVSPER--LLQAS 132
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
F +L + + LFA+DEAHCIS+WGHDFR EY L +LR + VP +ALTATA + R
Sbjct: 133 FIERLHELHISLFAIDEAHCISQWGHDFRPEYAALGRLRQYFPHVPIMALTATADQATRQ 192
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGV----KVINRGQSFVDELVQEILKSVAGAGSIIV 233
DI L + P+ + SFDR N+ Y V N+ + FV + S I+
Sbjct: 193 DICQRLTI-TPFSFLTSFDRPNIRYTVAEKLNAANQLRQFV---------TAQNGSSGII 242
Query: 234 YCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGID 293
YC + + V+E+++ L+ G A YH + R + F++D++ ++VAT+AFGMGI+
Sbjct: 243 YCGSRRRVDEVAERLRLQGHNADAYHAGRTQEERTDVQDRFLKDQLDIVVATVAFGMGIN 302
Query: 294 KPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQR 353
K +VR+V+HY PK++ESYYQE+GR GRDG+ + + + ++ + +S+ Q+
Sbjct: 303 KSNVRYVVHYDIPKSVESYYQETGRAGRDGLDAEALMLFDPADIGRVRHLIEQSEPGPQQ 362
Query: 354 TAIMESLLAAQRYCLLTTCRR 374
+ L + TCRR
Sbjct: 363 QVELHKLNTMAAFAEAQTCRR 383
>gi|346311079|ref|ZP_08853089.1| ATP-dependent DNA helicase RecQ [Collinsella tanakaei YIT 12063]
gi|345901773|gb|EGX71570.1| ATP-dependent DNA helicase RecQ [Collinsella tanakaei YIT 12063]
Length = 677
Score = 287 bits (734), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 155/354 (43%), Positives = 218/354 (61%), Gaps = 27/354 (7%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ TLK YFGY FRP Q ++Q I+ RD L VM TG+GKS+CYQ+P L+ LVVSP
Sbjct: 6 LDTLKTYFGYGSFRPGQDRMVQAILSGRDALGVMPTGAGKSICYQVPALMLKGLTLVVSP 65
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
L+SLM DQV SL G + +L S+ T ++V +AE G++Q++++ PE+
Sbjct: 66 LVSLMGDQVRSLLAAGAHPSYLNSSLTVPQQNTVLRRAEDGWYQIMYVAPERLADPRFME 125
Query: 119 WSKLLKA----GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVA-LTATATE 173
+++ L + G+ L AVDEAHC+S+WG DFR Y Q+ L P VA TATATE
Sbjct: 126 FAQRLASPGGYGIPLVAVDEAHCVSQWGQDFRPSYLQISAFIEALPQRPVVAAFTATATE 185
Query: 174 KVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRG------QSFVDELVQEILKSVAG 227
+VR DI++ L L++P + FDR NLF+GV+ + +S+V + QE
Sbjct: 186 RVREDIVHMLDLRSPQTVVTGFDRPNLFFGVEELGDKAKAAWIRSYVAQHNQE------- 238
Query: 228 AGSIIVYCMTIKDVEEISK----ALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMV 283
S I+YC T K V+E+S AL G++AG YH +G+ R + FI D + VMV
Sbjct: 239 --SGIIYCSTRKAVDELSAELSLALMPQGIRAGRYHAGLGNDERTQNQADFIDDRVPVMV 296
Query: 284 ATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNF 337
AT AFGMGIDKP+VR+VIH P+++E+YYQE+GR GRDG + C+L + ++F
Sbjct: 297 ATNAFGMGIDKPNVRYVIHNNVPESIEAYYQEAGRAGRDGDPASCYLLWNGNDF 350
>gi|374334314|ref|YP_005091001.1| ATP-dependent DNA helicase RecQ [Oceanimonas sp. GK1]
gi|372984001|gb|AEY00251.1| ATP-dependent DNA helicase RecQ [Oceanimonas sp. GK1]
Length = 608
Score = 287 bits (734), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 152/373 (40%), Positives = 226/373 (60%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FR Q ++++ + RD +V+M TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 21 LQQVFGYQDFRDGQLEIVEAAVAGRDAMVIMPTGGGKSLCYQIPALLRPGLTVVVSPLIS 80
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQ---TKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L G+ A ++ S+ + ++ T G +LL+++PE+ ++ F +
Sbjct: 81 LMKDQVDTLVANGVAAAYINSSLSRDTMLRHFTALRRGEIKLLYVSPER--LLQHEFMER 138
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + LFA+DEAHCIS+WGHDFR EY +L +L+ + +P +ALTATA E R D++
Sbjct: 139 LGELELGLFAIDEAHCISQWGHDFRPEYAELGRLKQWFPHIPVMALTATADEATRQDMLG 198
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L P + IASFDR N+ Y + +G +D+LV+ + + G IVYC + K V
Sbjct: 199 RLNLTAPLIHIASFDRPNIRYTLVEKFKG---LDQLVRYVAEQNGQCG--IVYCSSRKRV 253
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
EE+++ L G +A +YH + + R+ FIRD++ ++VAT+AFGMGIDKP+VR+V+
Sbjct: 254 EEVAERLLAKGHRAASYHAGLPLELRQSVQERFIRDDLDIVVATVAFGMGIDKPNVRYVV 313
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
HY PK +ESYYQE+GR GRDG+ S L Y + + S E Q + L
Sbjct: 314 HYDIPKNIESYYQETGRGGRDGLPSEALLLYDPGDVGRVRRLLENSDNEQQLQVELYKLN 373
Query: 362 AAQRYCLLTTCRR 374
+ TCRR
Sbjct: 374 VMAAFAESLTCRR 386
>gi|289208024|ref|YP_003460090.1| ATP-dependent DNA helicase RecQ [Thioalkalivibrio sp. K90mix]
gi|288943655|gb|ADC71354.1| ATP-dependent DNA helicase RecQ [Thioalkalivibrio sp. K90mix]
Length = 626
Score = 287 bits (734), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 160/379 (42%), Positives = 222/379 (58%), Gaps = 9/379 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L++ FGYS FR Q+ VI+ + D +V+M TG GKSLCYQ+P L A+V+SP
Sbjct: 21 LDILRETFGYSDFRGQQQAVIEHVTAGGDAVVLMPTGGGKSLCYQIPALARPGCAVVISP 80
Query: 62 LISLMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LI+LMQDQV +L+Q G+ A L S A+T V G LL+++PE+ +
Sbjct: 81 LIALMQDQVAALRQNGVAAASLDSGQNAETARGVLAALHAGELDLLYLSPER--LFASGM 138
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+L + LFA+DEAHC+S+WGHDFR EY QL L VP +ALTATA R +
Sbjct: 139 LERLQGIELALFAIDEAHCVSQWGHDFRPEYGQLAVLAEHFPDVPRMALTATADGPTRQE 198
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVIN--RGQSFVDELVQEILKSVAGAGSIIVYCM 236
I L+L+ I+SFDR N+ Y V + RG + D L++ I + AG I VYC+
Sbjct: 199 IRERLRLEQARAFISSFDRPNIRYRVAQADGGRGGAPRDRLLRFIREEHAGEAGI-VYCL 257
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K V+ +++ L + GV A YH + ++ R E F+R+E VMVAT+AFGMGIDKP+
Sbjct: 258 SRKKVDAVAEWLAEQGVPALPYHAGLSARTRAENQTRFLREEGVVMVATIAFGMGIDKPN 317
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR V H PK+LE YYQE+GR GRDG+ + W+ Y + SQ +R I
Sbjct: 318 VRFVAHMNLPKSLEGYYQETGRAGRDGLPANAWMVYGLQDVVTLRQMLEGSQAGPERQRI 377
Query: 357 MESLLAAQ-RYCLLTTCRR 374
+ L A +C +T+CRR
Sbjct: 378 EQQKLDAMLGFCEITSCRR 396
>gi|358447908|ref|ZP_09158417.1| ATP-dependent DNA helicase RecQ, partial [Marinobacter
manganoxydans MnI7-9]
gi|357227798|gb|EHJ06254.1| ATP-dependent DNA helicase RecQ, partial [Marinobacter
manganoxydans MnI7-9]
Length = 603
Score = 286 bits (733), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 159/375 (42%), Positives = 215/375 (57%), Gaps = 12/375 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L + FGY FRP Q D+I+ + E RD LV+M TG GKSLCYQ+P LV TA+V+SPLI+
Sbjct: 26 LHEVFGYESFRPLQGDIIREVSEGRDALVLMPTGGGKSLCYQVPALVRSGTAIVISPLIA 85
Query: 65 LMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV +LK+ G+ A FL S + + + TG LL+ PE+ +I
Sbjct: 86 LMQDQVAALKELGVRAAFLNSTMDFEQARATEYALMTGELDLLYCAPER--LIQPRTIEL 143
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L A + LFA+DEAHC+S+WGHDFR +Y QL L GVP +ALTATA E+ R +I
Sbjct: 144 LHDASISLFAIDEAHCVSQWGHDFRSDYLQLSMLAEQFPGVPRIALTATADERTRKEIAE 203
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKV-INRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L ++ FDR N+ Y + IN + +D +K+ IVYC++
Sbjct: 204 RLSLTEARHFVSGFDRPNIQYRIAPKINANKQLLD-----FIKAEHEGDCGIVYCLSRNK 258
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+ +K L Q G A YH + S+ R F+R++ ++VAT+AFGMGIDKPDVR V
Sbjct: 259 VDATAKTLAQKGYTALPYHAGLSSEQRAHHQERFLREDGVIIVATIAFGMGIDKPDVRFV 318
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ-RTAIMES 359
H PK+LE+YYQE+GR GRDG S W+ Y + K SQ + + +
Sbjct: 319 AHLDLPKSLEAYYQETGRAGRDGKPSTAWMVYGLQDVIKLRQMLESSQGNDHFKRVERQK 378
Query: 360 LLAAQRYCLLTTCRR 374
L A C +T+CRR
Sbjct: 379 LDAMLGLCEVTSCRR 393
>gi|311281501|ref|YP_003943732.1| ATP-dependent DNA helicase RecQ [Enterobacter cloacae SCF1]
gi|308750696|gb|ADO50448.1| ATP-dependent DNA helicase RecQ [Enterobacter cloacae SCF1]
Length = 609
Score = 286 bits (733), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 222/375 (59%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+ +I+ ++E RDCLVVM TG GKSLCYQ+P LV +VVSPLI
Sbjct: 16 VLQETFGYQQFRPGQETIIETVLEGRDCLVVMPTGGGKSLCYQIPALVLNGLTVVVSPLI 75
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q V TG +LL++ PE+ ++ +F
Sbjct: 76 SLMKDQVDQLLANGVAAACLNSTQNREQQLEVMAGCRTGKIRLLYIAPER--LMLDNFLE 133
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L + AVDEAHCIS+WGHDFR EY L +LR VPF+ALTATA + R+DI+
Sbjct: 134 HLAHWNPVMLAVDEAHCISQWGHDFRPEYAALGQLRQRFPAVPFMALTATADDTTRLDIV 193
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + ++SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 194 RLLGLNDPLIQLSSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRSK 248
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 249 VEDTAARLQSRGYSAAAYHAGLENGVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 308
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I
Sbjct: 309 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPAGQLQDIERHK 367
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 368 LNAMGAFAEAQTCRR 382
>gi|421254067|ref|ZP_15709061.1| RecQ [Pasteurella multocida subsp. multocida str. Anand1_buffalo]
gi|401693064|gb|EJS87299.1| RecQ [Pasteurella multocida subsp. multocida str. Anand1_buffalo]
Length = 632
Score = 286 bits (733), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 225/375 (60%), Gaps = 10/375 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L FGY FR Q++VI + +D LV+MATG+GKSLCYQ+P L LV+SP
Sbjct: 27 LDVLHAVFGYQSFRKGQEEVIDATLMGKDSLVIMATGNGKSLCYQIPALCFEGLTLVISP 86
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L GI A++L S+QT VQ K +G +LL+++PEK ++ SF
Sbjct: 87 LISLMKDQVDQLLANGIEADYLNSSQTFTEQQQVQNKLMSGTLKLLYVSPEK--VMTTSF 144
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + V A+DE HCIS+WGHDFR EY QL L++ P +ALTATA R D
Sbjct: 145 FHLISHCKVSFVAIDETHCISQWGHDFRPEYTQLGGLKSCFPHAPIMALTATADHATRQD 204
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L L++P+V I SFDR N+ Y ++ + + +++L + +L +G I+YC +
Sbjct: 205 ILRHLNLQSPHVYIGSFDRPNIRY--TLVEKFKP-IEQLCRFVLGQKGKSG--IIYCNSR 259
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I+++L+ GV A YH + + RE+ R F RD ++V+VAT+AFGMGI+K +VR
Sbjct: 260 SKVERIAESLRNKGVSAQAYHAGLETAQREQVQRAFQRDNVQVVVATIAFGMGINKSNVR 319
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+H+ P+++ESYYQE+GR GRD + + L+Y +++A E QR
Sbjct: 320 FVVHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLHKILLEKPESPQRQIEAL 379
Query: 359 SLLAAQRYCLLTTCR 373
L A + TCR
Sbjct: 380 KLQAIGEFAESQTCR 394
>gi|290477101|ref|YP_003470014.1| ATP-dependent DNA helicase [Xenorhabdus bovienii SS-2004]
gi|289176447|emb|CBJ83256.1| ATP-dependent DNA helicase [Xenorhabdus bovienii SS-2004]
Length = 608
Score = 286 bits (733), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 155/377 (41%), Positives = 220/377 (58%), Gaps = 18/377 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+K FGY FRP Q+ VI +++ RDCLVVM TG GKSLCYQ+P L+ LVVSPLIS
Sbjct: 17 LRKTFGYQQFRPGQQQVIDAVLDGRDCLVVMPTGGGKSLCYQIPALINNGLTLVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ AE L S Q + + G +LL++ PE+ ++ +F +
Sbjct: 77 LMKDQVDQLRANGVEAECLNSTQNREQQVDIIQRCRQGSIKLLYIAPER--LVTDNFLDQ 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY+ L + R +PF+ALTATA + R DI
Sbjct: 135 LHDWHPVLLAVDEAHCISQWGHDFRPEYRALGQFRRRFPELPFIALTATADKTTRQDITR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGV----KVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
L+L +P + ++SFDR N+ Y + K +++ SFV + G II YC +
Sbjct: 195 LLELHDPLIHLSSFDRPNIRYTLVEKYKPLDQLWSFV--------RGQQGKSGII-YCNS 245
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
VEE ++ L++ G+ YH + + R F RD+++V+VAT+AFGMGI+KP+V
Sbjct: 246 RTKVEETAERLQKRGLSVAPYHAGLDNNQRAWVQDAFQRDDLQVVVATVAFGMGINKPNV 305
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R V+H+ P+ +ESYYQE+GR GRDG+ + L++ ++ A E Q+
Sbjct: 306 RFVVHFDIPRNIESYYQETGRAGRDGLPAEAILFFDPADMAWLRRCLEEKPAGEQQDIER 365
Query: 358 ESLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 366 HKLNAMGAFAEAQTCRR 382
>gi|386743723|ref|YP_006216902.1| ATP-dependent DNA helicase RecQ [Providencia stuartii MRSN 2154]
gi|384480416|gb|AFH94211.1| ATP-dependent DNA helicase RecQ [Providencia stuartii MRSN 2154]
Length = 608
Score = 286 bits (733), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 158/375 (42%), Positives = 219/375 (58%), Gaps = 10/375 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
S L FGY FRP Q+ VI+ I++ RDCLV+M TG GKSLCYQ+P LV LVVSPL
Sbjct: 15 SILNNTFGYQSFRPGQEAVIRAILDNRDCLVLMPTGGGKSLCYQVPALVKEGVTLVVSPL 74
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLM+DQV L+ GI A L S+QT V G +LL++ PE+ ++ F
Sbjct: 75 ISLMKDQVDQLRLHGIKAACLNSSQTAQEQRDVMALCAEGAIKLLYVAPER--LLTDYFL 132
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
S+L + L AVDEAHC+S+WGHDFR EY+ + +LR VP +ALTATA E R DI
Sbjct: 133 SQLSSWNISLLAVDEAHCVSQWGHDFRPEYRAIGQLRQHFPDVPIMALTATADETTRADI 192
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+ L L +P + I+SFDR N+ Y + +D+L I AG IVYC +
Sbjct: 193 VRLLALHDPLIQISSFDRPNIRY---TLVEKYKPLDQLWFFIKAQKGKAG--IVYCNSRS 247
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
VEE ++ L++ G+ YH + ++ RE F++D ++++VAT+AFGMGI+K +VR
Sbjct: 248 KVEETAERLQKRGLSVAAYHAGLDNQQREWVQDAFLKDNLQIVVATVAFGMGINKSNVRF 307
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V H+ P+ +E+YYQE+GR GRDG+ + L+Y ++ A E Q+
Sbjct: 308 VAHFDIPRNIEAYYQETGRAGRDGVEAEAVLFYDPADMAWLRRCLEEKPAGLQQDIERHK 367
Query: 360 LLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 368 LNAIAAFAEAQTCRR 382
>gi|149371063|ref|ZP_01890658.1| ATP-dependent DNA helicase recQ [unidentified eubacterium SCB49]
gi|149355849|gb|EDM44407.1| ATP-dependent DNA helicase recQ [unidentified eubacterium SCB49]
Length = 697
Score = 286 bits (733), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 153/380 (40%), Positives = 224/380 (58%), Gaps = 21/380 (5%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+VS LK +FGY FRP Q+++I ++E +D L +M TG GKSLC+QLP L TA+V+S
Sbjct: 9 IVSLLKTHFGYDSFRPNQEEIINTVLEAKDVLAIMPTGGGKSLCFQLPALALNGTAIVIS 68
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTD---SSVQTKAETGYFQLLFMTPEKACIIPIS 117
PLI+LM+DQV +L GI+A + S Q +++ K T +L+++ PE S
Sbjct: 69 PLIALMKDQVDALNANGISAAYYNSTQPQEEQAAILEKLITRQLKLIYVAPE-------S 121
Query: 118 FWS---KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEK 174
WS L K + L AVDEAHCIS WGHDFR Y QL +L+ G P +ALTATA
Sbjct: 122 IWSLTNHLSKIEINLIAVDEAHCISSWGHDFRPAYTQLSRLKQEFPGTPIIALTATADRA 181
Query: 175 VRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVY 234
+ DI++ LK+ N ++SFDR N++ V+ GQ+ ++ + + + S G S I+Y
Sbjct: 182 TQDDILDQLKISNAKRFVSSFDRPNIYLDVRP---GQNRINHIYKFL--SSRGLQSGIIY 236
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C++ K E I+ LK G A YH + ++ R + FI D ++VAT+AFGMGIDK
Sbjct: 237 CLSRKSTESITAKLKTKGYDAAAYHAGLSAEDRSQIQEDFINDRTPIIVATIAFGMGIDK 296
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
+VR VIHY PK +E YYQE GR GRDG+ + ++Y+ ++ + + T+ +
Sbjct: 297 SNVRWVIHYNMPKNIEGYYQEIGRGGRDGLKARALMFYSYADVLMLRKFAEGTPTQEFQL 356
Query: 355 AIMESLLAAQRYCLLTTCRR 374
A +E + Q++ CRR
Sbjct: 357 AKLERM---QQFSESLNCRR 373
>gi|183600296|ref|ZP_02961789.1| hypothetical protein PROSTU_03856 [Providencia stuartii ATCC 25827]
gi|188020087|gb|EDU58127.1| ATP-dependent DNA helicase RecQ [Providencia stuartii ATCC 25827]
Length = 608
Score = 286 bits (733), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 158/375 (42%), Positives = 219/375 (58%), Gaps = 10/375 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
S L FGY FRP Q+ VI+ I++ RDCLV+M TG GKSLCYQ+P LV LVVSPL
Sbjct: 15 SILNNTFGYQSFRPGQEAVIRAILDNRDCLVLMPTGGGKSLCYQVPALVKEGVTLVVSPL 74
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLM+DQV L+ GI A L S+QT V G +LL++ PE+ ++ F
Sbjct: 75 ISLMKDQVDQLRLHGIKAACLNSSQTAQEQRDVMALCAQGAIKLLYVAPER--LLTDYFL 132
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
S+L + L AVDEAHC+S+WGHDFR EY+ + +LR VP +ALTATA E R DI
Sbjct: 133 SQLSSWNISLLAVDEAHCVSQWGHDFRPEYRAIGQLRQHFPDVPIMALTATADETTRADI 192
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+ L L +P + I+SFDR N+ Y + +D+L I AG IVYC +
Sbjct: 193 VRLLALHDPLIQISSFDRPNIRY---TLVEKYKPLDQLWFFIKAQKGKAG--IVYCNSRS 247
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
VEE ++ L++ G+ YH + ++ RE F++D ++++VAT+AFGMGI+K +VR
Sbjct: 248 KVEETAERLQKRGLSVAAYHAGLDNQQREWVQDAFLKDNLQIVVATVAFGMGINKSNVRF 307
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V H+ P+ +E+YYQE+GR GRDG+ + L+Y ++ A E Q+
Sbjct: 308 VAHFDIPRNIEAYYQETGRAGRDGVEAEAVLFYDPADMAWLRRCLEEKPAGLQQDIERHK 367
Query: 360 LLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 368 LNAIAAFAEAQTCRR 382
>gi|431796165|ref|YP_007223069.1| ATP-dependent DNA helicase RecQ [Echinicola vietnamensis DSM 17526]
gi|430786930|gb|AGA77059.1| ATP-dependent DNA helicase RecQ [Echinicola vietnamensis DSM 17526]
Length = 708
Score = 286 bits (733), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 146/373 (39%), Positives = 228/373 (61%), Gaps = 8/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK ++GY FR Q+ +IQ I++++D +V+M TG GKS+CYQ+P +V LV+SPLI+
Sbjct: 8 LKNFYGYDSFRGQQEAIIQSILKQQDTIVLMPTGGGKSVCYQIPAMVNDGLTLVISPLIA 67
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L GI A +L S+Q+ S V + +G +LL++ PE+
Sbjct: 68 LMKDQVDALNGMGIPAAYLNSSQSASEQRFVSEEIRSGKLKLLYVAPERLFGGAFPLTET 127
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + L A+DEAHC+S+WGHDFR +Y + +LR L VPFVALTATA ++ R DI +
Sbjct: 128 LKTSRLSLVAIDEAHCVSQWGHDFRPDYLMIGRLRQELPDVPFVALTATADKQTRADIAD 187
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L+ P I+SFDR N+ Y +++ + SF ++L+ + +G I+YC++ K+V
Sbjct: 188 KLGLRKPKWFISSFDRPNITY--RIVPKRNSF-EKLLDFLEYHQKNSG--IIYCLSRKNV 242
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+++ L+ G+ A YH + + R FI+D++++MVAT+AFGMGIDK +VR V+
Sbjct: 243 EDMAGRLQAAGLSALPYHAGLDRQTRASHQEKFIKDKVKIMVATIAFGMGIDKSNVRFVV 302
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H P+ +E YYQE+GR GRDG+ S L+Y+ ++ + ++ L
Sbjct: 303 HMNMPQNIEGYYQETGRAGRDGLPSDALLFYSYADVMTLQRMIDTPDNPDYSEVMLAKLE 362
Query: 362 AAQRYCLLTTCRR 374
+++C TCRR
Sbjct: 363 KMKQFCQSNTCRR 375
>gi|238763624|ref|ZP_04624584.1| ATP-dependent DNA helicase recQ [Yersinia kristensenii ATCC 33638]
gi|238698102|gb|EEP90859.1| ATP-dependent DNA helicase recQ [Yersinia kristensenii ATCC 33638]
Length = 610
Score = 286 bits (733), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 224/373 (60%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FRP Q+++I + +DCLVVM TG GKSLCYQ+P LVT LVVSPLIS
Sbjct: 17 LRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVTDGLTLVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S+QT +V +G +LL++ PE+ ++ SF +
Sbjct: 77 LMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQIKLLYIAPER--LVMESFLDQ 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + L AVDEAHCIS+WGHDFR EY+ L +L+ +P +ALTATA E R DI+
Sbjct: 135 LHQWRPALLAVDEAHCISQWGHDFRPEYRALGQLKQRFPDLPVIALTATADEATRGDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L+NP + ++SFDR N+ Y ++ + + +D+L + + +G I+YC + V
Sbjct: 195 LLNLENPLIQVSSFDRPNIRY--TLVEKFKP-LDQLWRFVQDQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ YH + ++ R + F RD+++V+VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+T+ESYYQE+GR GRDG+ + L Y ++ A E Q+ L
Sbjct: 310 HFDIPRTIESYYQETGRAGRDGLPAEAMLLYDPADMAWLRRCLEEKPAGAQQDIERHKLN 369
Query: 362 AAQRYCLLTTCRR 374
A + TCRR
Sbjct: 370 AMGAFAEAQTCRR 382
>gi|433678735|ref|ZP_20510560.1| DNA helicase [Xanthomonas translucens pv. translucens DSM 18974]
gi|430816172|emb|CCP41071.1| DNA helicase [Xanthomonas translucens pv. translucens DSM 18974]
Length = 602
Score = 286 bits (733), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 161/383 (42%), Positives = 228/383 (59%), Gaps = 25/383 (6%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
S L + FGY FR Q+D+++ + +D LV+M TG GKSLCYQ+P L+ T LV+SPL
Sbjct: 7 SVLNRVFGYDQFRGPQQDIVEHVAAGQDALVLMPTGGGKSLCYQIPSLLRDGTGLVISPL 66
Query: 63 ISLMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
I+LMQDQV +L+Q G+ AE+L S A+T V+ + G LL++ PE+ ++ F
Sbjct: 67 IALMQDQVEALRQLGVRAEYLNSTLDAETAQRVERELLAGELDLLYVAPER--LLTPRFL 124
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
S L ++ + LFA+DEAHC+S+WGHDFR EY+QL L +P +ALTATA + +I
Sbjct: 125 SLLERSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWPQIPRIALTATADPPTQREI 184
Query: 180 INSLKLKNPYVTIASFDRKNLFYGV-KVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
L L ++SFDR N+ Y V + N + +D L++ G+ I VYCM+
Sbjct: 185 AERLDLTQARHFVSSFDRPNIRYTVVQKDNSKRQLLD-----FLRAHRGSAGI-VYCMSR 238
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
+ VEE ++ L + G+ A YH + ++ R + R F+R++ VM AT+AFGMGIDKPDVR
Sbjct: 239 RKVEETAEFLAKEGLNALPYHAGLPAEVRADNQRRFLREDGIVMCATIAFGMGIDKPDVR 298
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYA-------RSNFAKGDFYCGESQTEN 351
V H PK+LE YYQE+GR GRDG A+ WL Y + KG+ GE +
Sbjct: 299 FVAHTDLPKSLEGYYQETGRAGRDGEAAEAWLCYGLGDVVLLKQMIEKGE--AGEDRKRV 356
Query: 352 QRTAIMESLLAAQRYCLLTTCRR 374
+R ++ LL YC CRR
Sbjct: 357 ERRK-LDQLLG---YCESMQCRR 375
>gi|386282516|ref|ZP_10060164.1| ATP-dependent DNA helicase recQ [Escherichia sp. 4_1_40B]
gi|386120366|gb|EIG68995.1| ATP-dependent DNA helicase recQ [Escherichia sp. 4_1_40B]
Length = 611
Score = 286 bits (733), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 155/374 (41%), Positives = 224/374 (59%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ DCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 19 LQETFGYQQFRPGQEEIIDTVLSGCDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 78
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 79 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 136
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 137 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 196
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 197 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 251
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 252 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 311
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 312 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 370
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 371 NAMGAFAEAQTCRR 384
>gi|345301389|ref|YP_004830747.1| ATP-dependent DNA helicase RecQ [Enterobacter asburiae LF7a]
gi|345095326|gb|AEN66962.1| ATP-dependent DNA helicase RecQ [Enterobacter asburiae LF7a]
Length = 630
Score = 286 bits (733), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 222/375 (59%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L + FGY FRP Q+ +I ++ RDCLVVM TG GKSLCYQ+P LV +VVSPLI
Sbjct: 37 VLHETFGYQQFRPGQETIIDTVLGGRDCLVVMPTGGGKSLCYQVPALVLNGLTVVVSPLI 96
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S QT V TG +LL++ PE+ ++ +F
Sbjct: 97 SLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQIRLLYIAPER--LMLDNFLE 154
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R+DI+
Sbjct: 155 HLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPELPFMALTATADDTTRLDIV 214
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P++ ++SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 215 RLLGLNDPFIQVSSFDRPNIRY---MLMEKFKPLDQLLRYVQEQRGKSG--IIYCNSRAK 269
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 270 VEDTAARLQNRGFSAAAYHAGLENHIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 329
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I
Sbjct: 330 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHK 388
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 389 LNAMGAFAEAQTCRR 403
>gi|347541663|ref|YP_004849089.1| ATP-dependent DNA helicase RecQ [Pseudogulbenkiania sp. NH8B]
gi|345644842|dbj|BAK78675.1| ATP-dependent DNA helicase RecQ [Pseudogulbenkiania sp. NH8B]
Length = 600
Score = 286 bits (733), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 154/376 (40%), Positives = 219/376 (58%), Gaps = 10/376 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ L+ FGY FR Q +++ + + LV+M TG GKSLCYQ+P L+ A+VVSPL
Sbjct: 6 ALLQTVFGYPAFRGEQAEIVAHVGGGGNALVLMPTGGGKSLCYQIPALLREGVAIVVSPL 65
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQT---KAETGYFQLLFMTPEKACIIPISFW 119
I+LMQDQV +L + G+ A L SA + +A G LL++ PE+ ++ F
Sbjct: 66 IALMQDQVATLSELGVAAACLNSATAPDEARDIVRQARAGTLDLLYVAPER--LLTPRFL 123
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
L + LFA+DEAHC+S WGHDFR EY+QL L VP +ALTATA E+ R DI
Sbjct: 124 ELLNDLRIALFAIDEAHCVSHWGHDFRPEYQQLGILAERFPAVPRIALTATADEQTRADI 183
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
++ L+L V ++SFDR NLFY V + + + +Q+ +G IVYC++ K
Sbjct: 184 LHYLRLAEARVFLSSFDRPNLFYQVVEKHNAKKQLLAFIQQDYPGASG----IVYCLSRK 239
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
VE+ ++ L + G++A YH +G + R+ R F+R++ VMVAT+AFGMGIDKPDVR
Sbjct: 240 RVEDTAQWLVENGIRALPYHAGLGHEVRDRHQREFLREDGVVMVATVAFGMGIDKPDVRF 299
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAK-GDFYCGESQTENQRTAIME 358
V H PK+ E++YQESGR GRDG+ + WL Y ++ + G Q+ +
Sbjct: 300 VAHIDLPKSPENFYQESGRAGRDGLPAASWLCYGLNDMVQLTQMIEGSEMAALQKQVELS 359
Query: 359 SLLAAQRYCLLTTCRR 374
L A +C CRR
Sbjct: 360 KLDAMLAFCETAACRR 375
>gi|339483748|ref|YP_004695534.1| ATP-dependent DNA helicase RecQ [Nitrosomonas sp. Is79A3]
gi|338805893|gb|AEJ02135.1| ATP-dependent DNA helicase RecQ [Nitrosomonas sp. Is79A3]
Length = 599
Score = 286 bits (733), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 158/377 (41%), Positives = 218/377 (57%), Gaps = 10/377 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
++ LK+ FGY FR Q +VI + DCLV+M TG GKSLCYQ+P L+ A+VVSP
Sbjct: 5 LNILKEVFGYPAFRGQQAEVIAHLANGGDCLVLMPTGGGKSLCYQIPALLRDGVAIVVSP 64
Query: 62 LISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LI+LMQ+QV +L + G+ A L S+ Q + V+ + G + LL++ PE+ ++ F
Sbjct: 65 LIALMQNQVAALHEIGVRAAVLNSSLSQQEAAQVEQNLQAGEYDLLYVAPER--LLTARF 122
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + + + LFA+DEAHC+S+WGHDFR EY QL L VP +ALTATA R +
Sbjct: 123 LNLITRIPIALFAIDEAHCVSQWGHDFRPEYSQLSVLHERFSEVPRIALTATADMDTRKE 182
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
II L L V ++SFDR N+ Y + +S + +Q AG IVYC++
Sbjct: 183 IIERLGLDVARVFVSSFDRPNIRYQIIDKTNSRSQLLTFIQAEHPGDAG----IVYCLSR 238
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K VEE + L G++A YH M + R F+R+E +MVAT+AFGMGIDKPDVR
Sbjct: 239 KKVEETTACLVDHGMRAVAYHAGMNMQERSLNQEKFLREEGIIMVATIAFGMGIDKPDVR 298
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ-RTAIM 357
V H PK++E YYQE+GR GRDG A+ W+ Y + + ESQ + + +
Sbjct: 299 FVAHLDLPKSIEGYYQETGRAGRDGQAANAWMVYGLGDVIQQRRMIEESQAQLKFKQVAA 358
Query: 358 ESLLAAQRYCLLTTCRR 374
L A C TTCRR
Sbjct: 359 RKLEAMLSLCETTTCRR 375
>gi|336317637|ref|ZP_08572488.1| ATP-dependent DNA helicase RecQ [Rheinheimera sp. A13L]
gi|335877984|gb|EGM75932.1| ATP-dependent DNA helicase RecQ [Rheinheimera sp. A13L]
Length = 599
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 150/383 (39%), Positives = 232/383 (60%), Gaps = 22/383 (5%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ TLK+ FGYS FR Q +VIQ + +D V+M TG GKSLCYQLP L+ +VVS
Sbjct: 5 LFDTLKQAFGYSQFRHGQLEVIQACLSGQDTFVLMPTGGGKSLCYQLPALMLPYVTVVVS 64
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQT---KAETGYFQLLFMTPEKACIIPIS 117
PL+SLM+DQV +L+ GI AEF+ S+Q+ +Q + +LL++ PE+ ++
Sbjct: 65 PLMSLMKDQVDALQANGIAAEFINSSQSREEIQDVIRRLRNQQLKLLYLAPER--LLQAD 122
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
F S+L + GV LFA+DEAHCIS+WGHDFR Y +L +L+ + VP +ALTATA +
Sbjct: 123 FMSRLAEVGVSLFAIDEAHCISQWGHDFRPHYTELAQLKHYFPHVPMMALTATADPATQK 182
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI L L+ PY+++ SFDR N+ Y V+ R ++++V + +G I+YC +
Sbjct: 183 DISRQLNLQQPYISVGSFDRPNIRYTVQEKFRP---LEQVVNYLKLQEQQSG--IIYCAS 237
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
+ V+E+++ L G + YH + ++ R F +D+I++++AT+AFGMG++K ++
Sbjct: 238 RRKVDELTEQLAGKGFQVAAYHAGLTNEQRNSVQEAFKKDQIQLIIATVAFGMGVNKSNI 297
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIH+ P+T+E+YYQE+GR GRDG+ + + ++ A+ + E N RT +
Sbjct: 298 RFVIHFELPRTIEAYYQETGRAGRDGVPAEALMLVDPADIARMRSWI-EKDENNSRTEV- 355
Query: 358 ESLLAAQRYCLLT------TCRR 374
A QR+ + TCRR
Sbjct: 356 ----ALQRFNQMAAFAQAQTCRR 374
>gi|423198737|ref|ZP_17185320.1| ATP-dependent DNA helicase RecQ [Aeromonas hydrophila SSU]
gi|404629927|gb|EKB26652.1| ATP-dependent DNA helicase RecQ [Aeromonas hydrophila SSU]
Length = 611
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 149/376 (39%), Positives = 231/376 (61%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
++ L+ FGY FRP Q ++I++I+ RD LV+ TG GKSLCYQ+P L+ +VVSP
Sbjct: 17 LALLQAVFGYQQFRPGQLEIIEQIVAGRDALVLKPTGGGKSLCYQIPALLRPGLGVVVSP 76
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT-DSSVQTKA--ETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV SL+ G+ A ++ SA + + +Q A G ++++++PE+ ++ F
Sbjct: 77 LISLMKDQVDSLRANGVAAVYINSALSREEMIQNFAAMRRGEIKIVYVSPER--LLQHEF 134
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+L + + LFA+DEAHC+S+WGHDFR EY L +L+ + VP VALTATA E R D
Sbjct: 135 MDRLAELPLGLFAIDEAHCVSQWGHDFRPEYAALGRLKQWFPQVPVVALTATADEATRSD 194
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
+++ L+L++P++ ASFDR N+ Y + + + ++ ++L++ + G IVYC +
Sbjct: 195 MLHRLELQDPFIHTASFDRPNIRYSL--VEKFKA-AEQLLRYVQSQKGNCG--IVYCSSR 249
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VEE+++ L + G KA YH + + R++ F++D+I ++VAT+AFGMGIDKP+VR
Sbjct: 250 NRVEEVAERLSRHGCKAAPYHAGLPLELRQQTQEAFLKDDIEIVVATVAFGMGIDKPNVR 309
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+HY PK +ESYYQE+GR GRDG + L Y ++ + + Q
Sbjct: 310 FVVHYDIPKNIESYYQETGRAGRDGTPAEALLLYDPADIGRVRRLLDNIENPQQLQVEQY 369
Query: 359 SLLAAQRYCLLTTCRR 374
L + TCRR
Sbjct: 370 KLNVMAAFAEAQTCRR 385
>gi|124005481|ref|ZP_01690321.1| ATP-dependent DNA helicase RecQ [Microscilla marina ATCC 23134]
gi|123988915|gb|EAY28508.1| ATP-dependent DNA helicase RecQ [Microscilla marina ATCC 23134]
Length = 712
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 157/376 (41%), Positives = 222/376 (59%), Gaps = 13/376 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK YFGYS FRP QK++I I+E +D +M TG GKSLCYQ+P L+ +VVSPLI+
Sbjct: 10 LKDYFGYSRFRPLQKEIISAILEGKDVFALMPTGGGKSLCYQVPALMFNGLCVVVSPLIA 69
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM++QV +L Q I A +L S Q++ + ++ K +LL+++PEK + +F +
Sbjct: 70 LMKNQVAALAQYNIPAAYLNSTQSNEAQELIENKCFNKEIKLLYVSPEK--LTSETFLNF 127
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L V +FA+DEAHCIS WGHDFR EY +L K++ F P VALTATA R DIIN
Sbjct: 128 LKIIQVSMFAIDEAHCISAWGHDFRPEYSKLSKIKEFFPTKPMVALTATADTITRQDIIN 187
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L+L + + ASFDR N+ V G ++ +++ + G ++YC+T ++
Sbjct: 188 QLQLTDYELFTASFDRPNIRMNVTT---GFHRIERIIRFLNSRPNQTG--LIYCLTRQET 242
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
EE+SK L++ G A YH + SK R + F+ DE+ ++ AT+AFGMGI K +VR VI
Sbjct: 243 EEMSKKLQEAGFAARCYHAGLNSKERSQVQHGFLNDEVHIVCATVAFGMGIHKNNVRFVI 302
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ---RTAIME 358
HY P+ LESYYQE GR GRD S L+Y+ + ES+T ++ M
Sbjct: 303 HYNMPRNLESYYQEIGRAGRDQEISDVILFYSFKDVIHWRTLIAESKTNHELDNNQLKMA 362
Query: 359 SLLAAQRYCLLTTCRR 374
L Q+Y + CRR
Sbjct: 363 KLARMQQYAEASICRR 378
>gi|334706300|ref|ZP_08522166.1| ATP-dependent DNA helicase RecQ [Aeromonas caviae Ae398]
Length = 611
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 149/376 (39%), Positives = 230/376 (61%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
++ L+ FGY FRP Q ++I++I+ RD LV+ TG GKSLCYQ+P L+ +VVSP
Sbjct: 17 LALLQAVFGYQQFRPGQLEIIEQIVAGRDALVLKPTGGGKSLCYQIPALLRPGLGVVVSP 76
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT-DSSVQTKA--ETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV +L+ G+ A ++ SA + + +Q A G +L++++PE+ ++ F
Sbjct: 77 LISLMKDQVDTLRANGVAAVYINSALSREEMIQNFAAMRRGEIKLVYVSPER--LLQHEF 134
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+L + + LFA+DEAHC+S+WGHDFR EY L +L+ + VP VALTATA E R D
Sbjct: 135 MDRLAELPLGLFAIDEAHCVSQWGHDFRPEYAALGRLKQWFPQVPVVALTATADEATRSD 194
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
+++ L+L +P++ ASFDR N+ Y + + + ++ ++L++ + G IVYC +
Sbjct: 195 MLHRLELNDPFIHTASFDRPNIRYSL--VEKFKA-AEQLLRYVQSQKGNCG--IVYCSSR 249
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VEE+++ L + G KA YH + + R++ F++D+I ++VAT+AFGMGIDKP+VR
Sbjct: 250 NRVEEVAERLSRHGCKAAPYHAGLPLELRQQTQEAFLKDDIEIVVATVAFGMGIDKPNVR 309
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+HY PK +ESYYQE+GR GRDG + L Y ++ + + Q
Sbjct: 310 FVVHYDIPKNIESYYQETGRAGRDGTPAEALLLYDPADIGRVRRLLDNIENPQQLQVEQY 369
Query: 359 SLLAAQRYCLLTTCRR 374
L + TCRR
Sbjct: 370 KLNVMAAFAEAQTCRR 385
>gi|212697541|ref|ZP_03305669.1| hypothetical protein ANHYDRO_02114 [Anaerococcus hydrogenalis DSM
7454]
gi|212675540|gb|EEB35147.1| hypothetical protein ANHYDRO_02114 [Anaerococcus hydrogenalis DSM
7454]
Length = 595
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 159/380 (41%), Positives = 220/380 (57%), Gaps = 15/380 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ LKKYFGY FR Q+++I+ I++ +D L V+ TG GKS+CYQLP L+ LV+S
Sbjct: 3 ILENLKKYFGYDSFRKGQEELIENILDGKDVLGVLPTGGGKSICYQLPALIKDGICLVIS 62
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKA----ETGYFQLLFMTPEKACIIPI 116
PLISLM+DQV SL + GI+A F+ S+Q D TK + ++L+++PE+ +
Sbjct: 63 PLISLMKDQVDSLIENGIDAAFINSSQ-DIETYTKTLREIKNNKIKILYISPER---LEN 118
Query: 117 SFWSKLLKA-GVCLFAVDEAHCISEWGHDFRLEYKQLDKL-RTFLLGVPFVALTATATEK 174
F+ +K + AVDEAHCIS+WGHDFR YK + ++ F + A TATAT
Sbjct: 119 EFFINFIKDLNISFIAVDEAHCISQWGHDFRPSYKIIPQIYDLFDRKIQIAAFTATATSS 178
Query: 175 VRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVY 234
VR DII +LKL NP+V + FDR+NLF+ VK F+ ++ K ++G I+Y
Sbjct: 179 VREDIIKNLKLDNPFVKVTGFDRENLFFEVKKPKDKLGFISTYLKN-KKDMSG----IIY 233
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
T K VE K LK+L K YH + K +++ FI D ++VAT AFGMGIDK
Sbjct: 234 ASTRKRVESCYKYLKKLSYKVTYYHAGLSDKEKKKNQEDFIYDRKNIIVATNAFGMGIDK 293
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
DVR+VIH PK +ESYYQE+GR GRDG S L Y+ + + +SQ N +
Sbjct: 294 SDVRYVIHMNMPKDMESYYQEAGRAGRDGEKSDAILLYSGQDIVVNKYLISQSQNRNYQL 353
Query: 355 AIMESLLAAQRYCLLTTCRR 374
+E L Y C R
Sbjct: 354 VKLEKLQTIINYVNTNQCLR 373
>gi|126179385|ref|YP_001047350.1| ATP-dependent DNA helicase RecQ [Methanoculleus marisnigri JR1]
gi|125862179|gb|ABN57368.1| ATP-dependent DNA helicase RecQ [Methanoculleus marisnigri JR1]
Length = 605
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 162/376 (43%), Positives = 221/376 (58%), Gaps = 11/376 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ L+KYFGY+ F P+Q++++ ++ RD L VMATG GKSLCYQLP LV G +VVSPL
Sbjct: 6 TALEKYFGYTSFLPHQEEIVDAVLAGRDVLAVMATGGGKSLCYQLPALVFGGLTVVVSPL 65
Query: 63 ISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
I+LM+DQV L+ GI A + S+ V+ G ++L+++PE+A + P F
Sbjct: 66 IALMKDQVDGLRANGIPAATINSSLGYGEQKIVERVILEGRIRILYVSPERA-VQPF-FL 123
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
S + KA V L A+DEAHCIS WGH+FR EY++L L+ VP +ALTATA V+ DI
Sbjct: 124 SLIAKADVRLIAIDEAHCISMWGHNFRPEYRRLRVLKERFPTVPVIALTATAIPAVQNDI 183
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
L L NP + SF+RKNL Y +V+ + + F LV + + AG I+YC + K
Sbjct: 184 AVELALSNPARFVGSFNRKNLTY--RVVPKARYF-PRLVAYLNEHKNDAG--IIYCFSQK 238
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
E++K L+ G A YH + R E F R ++ ++ AT+AFGMGIDKPDVR
Sbjct: 239 ATVELAKKLQDKGFSALPYHAGLPDAVRAEHQEAFSRGDVAIICATVAFGMGIDKPDVRF 298
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYC-GESQTENQRTAIME 358
VIH PK +ESYYQE+GR GRDG C LYY+R ++ + E Q+
Sbjct: 299 VIHTDLPKDIESYYQETGRAGRDGEPGDCILYYSRGDYGTIRYIIEKEGADATQKDVAYR 358
Query: 359 SLLAAQRYCLLTTCRR 374
+ A YC CRR
Sbjct: 359 KVGAMLDYCETPGCRR 374
>gi|52841103|ref|YP_094902.1| ATP-dependent DNA helicase RecQ [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|54296889|ref|YP_123258.1| hypothetical protein lpp0930 [Legionella pneumophila str. Paris]
gi|397666546|ref|YP_006508083.1| ATP-dependent DNA helicase [Legionella pneumophila subsp.
pneumophila]
gi|52628214|gb|AAU26955.1| ATP-dependent DNA helicase RecQ [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|53750674|emb|CAH12081.1| hypothetical protein lpp0930 [Legionella pneumophila str. Paris]
gi|395129957|emb|CCD08190.1| ATP-dependent DNA helicase [Legionella pneumophila subsp.
pneumophila]
Length = 608
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 155/376 (41%), Positives = 222/376 (59%), Gaps = 11/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
++ LKKYFG+ FRP Q+ +I+ +I D LV+M TG GKSLCYQ+P +V +VVSP
Sbjct: 15 LAVLKKYFGFDSFRPPQEKIIEDVISGEDVLVLMPTGGGKSLCYQIPAIVRPGVGIVVSP 74
Query: 62 LISLMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LI+LM+DQV +LK +GI A + S A+ +V + LL++ PE+ +I SF
Sbjct: 75 LIALMEDQVTALKLQGIRAAYYNSSLTAEEARNVLNQLHHNELDLLYIAPER--LISTSF 132
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+L + + LFA+DEAHCIS+WGHDFR EY L L+T +P +ALTATA ++ R D
Sbjct: 133 LDRLSECTISLFAIDEAHCISQWGHDFRPEYACLGLLKTNFPDIPMIALTATADKQTRED 192
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L + P + SF+R N+ Y KV+ + + V +L + +G I+YC T
Sbjct: 193 IVTKLNYQ-PKKYVVSFNRPNIHY--KVVPKTNA-VKQLNLFLQSDTQQSG--IIYCGTR 246
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE ++ L++LG KA YH + R E LF D I ++VAT+AFGMGIDKP+VR
Sbjct: 247 HTVEHLTAKLQELGFKARAYHAGLPHAVRREVQNLFRYDRIDIVVATIAFGMGIDKPNVR 306
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+H+ PK++E YYQE+GR GRDG+ + L Y ++ A+ + E QR
Sbjct: 307 FVVHHDLPKSIEGYYQETGRAGRDGLPAKALLLYDAADSARLRSWIMNIPLEEQRHIETN 366
Query: 359 SLLAAQRYCLLTTCRR 374
L + + CRR
Sbjct: 367 KLNHMLAFAEASHCRR 382
>gi|345863268|ref|ZP_08815480.1| ATP-dependent DNA helicase RecQ [endosymbiont of Tevnia jerichonana
(vent Tica)]
gi|345125729|gb|EGW55597.1| ATP-dependent DNA helicase RecQ [endosymbiont of Tevnia jerichonana
(vent Tica)]
Length = 608
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 157/378 (41%), Positives = 225/378 (59%), Gaps = 12/378 (3%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L++ FGY FR Q ++IQ++ E D LV+M TG GKSLCYQ+P L+ ++VSP
Sbjct: 8 LEILRETFGYQQFRGQQAEIIQQLSEGGDALVIMPTGGGKSLCYQIPSLLRDGVGIIVSP 67
Query: 62 LISLMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LI+LMQDQV +L + GI A FL S Q + ++T+ +G LL++ PE+ + P +
Sbjct: 68 LIALMQDQVAALNELGIQAAFLNSTLEPQAAAQIETELRSGTLDLLYLAPER-LLQPRTL 126
Query: 119 WSKLL-KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
KLL ++ + LFA+DEAHC+S+WGHDFR EY QL L+ +P +ALTATA E R
Sbjct: 127 --KLLAQSPIALFAIDEAHCVSQWGHDFRPEYIQLSLLQERFPQIPRIALTATADETTRR 184
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
+I L L+ ++ FDR N+ Y + R + + + +Q S AG IVYC++
Sbjct: 185 EIATRLGLEQAPQFVSGFDRPNIRYHIGQHERQRDALWQFLQREHPSDAG----IVYCLS 240
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K VE +S+ L G A YH + + RE+ F+++E ++VAT+AFGMGIDKPDV
Sbjct: 241 RKKVESVSEWLSNKGRSALPYHAGLPHQLREQHQARFLKEEGVIIVATIAFGMGIDKPDV 300
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQT-ENQRTAI 356
R V H PK++E+YYQE+GR GRDG ++ W+ Y N +S E Q+T
Sbjct: 301 RFVAHLDLPKSIEAYYQETGRAGRDGESANAWMSYGLQNVITLRQMIEQSDAPEAQQTVE 360
Query: 357 MESLLAAQRYCLLTTCRR 374
L A C +T+CRR
Sbjct: 361 RRKLDAMLGLCEITSCRR 378
>gi|336248080|ref|YP_004591790.1| ATP-dependent DNA helicase RecQ [Enterobacter aerogenes KCTC 2190]
gi|444353809|ref|YP_007389953.1| ATP-dependent DNA helicase RecQ [Enterobacter aerogenes EA1509E]
gi|334734136|gb|AEG96511.1| ATP-dependent DNA helicase RecQ [Enterobacter aerogenes KCTC 2190]
gi|443904639|emb|CCG32413.1| ATP-dependent DNA helicase RecQ [Enterobacter aerogenes EA1509E]
Length = 608
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 144/338 (42%), Positives = 211/338 (62%), Gaps = 10/338 (2%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+ +I +E RDCLVVM TG GKSLCYQ+P LV G +VVSPLI
Sbjct: 16 VLQETFGYQQFRPGQESIIATALEGRDCLVVMPTGGGKSLCYQVPALVLGGLTVVVSPLI 75
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q+ V +G +LL++ PE+ ++ +F
Sbjct: 76 SLMKDQVDQLLANGVAAACLNSTQSREQQQEVMAGCRSGQIRLLYIAPER--LMLDNFLE 133
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L + + AVDEAHCIS+WGHDFR EY L +LR + +PF+ALTATA + R DI+
Sbjct: 134 HLSHWNLAMLAVDEAHCISQWGHDFRPEYAALGQLRQRMPHIPFMALTATADDTTRRDIV 193
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + ++SFDR N+ Y ++ +D+L++ + +G I+YC +
Sbjct: 194 RLLGLNDPLIQVSSFDRPNIRY---MLMEKFKPLDQLMRYVQDQRGKSG--IIYCNSRSK 248
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 249 VEDTAARLQSRGISAAAYHAGLENDIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 308
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A
Sbjct: 309 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346
>gi|257066901|ref|YP_003153157.1| ATP-dependent DNA helicase RecQ [Anaerococcus prevotii DSM 20548]
gi|256798781|gb|ACV29436.1| ATP-dependent DNA helicase RecQ [Anaerococcus prevotii DSM 20548]
Length = 594
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 155/377 (41%), Positives = 221/377 (58%), Gaps = 12/377 (3%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ LKKYFGY FR Q+++I+ I+ RD L V+ TG GKS+CYQLP L+ +LV+SP
Sbjct: 5 IRNLKKYFGYDSFREGQEEIIKEILAGRDVLGVLPTGGGKSICYQLPALMMDGISLVISP 64
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDSSVQ---TKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV +L++ GI A + S+ + + ++ +G +L++++PE+ + F
Sbjct: 65 LISLMKDQVDALRENGIAASLINSSLSLEDYKKSLSEIRSGAVKLVYISPER---LENDF 121
Query: 119 WSKLLKA-GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
+ LK V AVDEAHCIS+WGHDFR YK + KL V A TATAT++VR
Sbjct: 122 FIDFLKDFKVSFVAVDEAHCISQWGHDFRPSYKLIPKLYETFDKVQITAFTATATKEVRD 181
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DII +L+L++P+V + FDRKNL + V+ + +++ + + S S I+Y T
Sbjct: 182 DIIENLELEDPFVKVTGFDRKNLLFLVEKPKKKINYLKDFL-----SNHEEDSGIIYAST 236
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K V+ I K LK +G G YH M R+++ FI DE +++VAT AFGMGIDK +V
Sbjct: 237 RKKVDAIHKKLKSMGYACGKYHAGMTESERKKSQDAFIYDEDKIIVATNAFGMGIDKSNV 296
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R+VIHY PK +ESYYQE+GR GRDG + C L Y+ + + +
Sbjct: 297 RYVIHYNMPKDMESYYQEAGRAGRDGEEATCILLYSGQDIIINKHLINMGTNRVYKRIQL 356
Query: 358 ESLLAAQRYCLLTTCRR 374
E L Y T C R
Sbjct: 357 EKLQTIINYVNTTACLR 373
>gi|152975682|ref|YP_001375199.1| ATP-dependent DNA helicase RecQ [Bacillus cytotoxicus NVH 391-98]
gi|152024434|gb|ABS22204.1| ATP-dependent DNA helicase RecQ [Bacillus cytotoxicus NVH 391-98]
Length = 706
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 149/372 (40%), Positives = 225/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 10 LSSYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 69
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 70 LMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 127
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 128 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPIVLALTATATPQVREDIC 187
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
+L + + + +F+R+NL + V +++ E +++ K S I+Y T K
Sbjct: 188 RALDIDPTHTIMTTFERENLSFSVIKGQDRNAYLKEYIRQNQKE-----SGIIYAATRKV 242
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R+E F+RDE+ VMVAT AFGMGIDK ++R+V
Sbjct: 243 VDQLYEELSKAGVSVARYHAGMSDYERDEQQERFLRDEVSVMVATSAFGMGIDKSNIRYV 302
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 303 IHYQLPKNMESYYQEAGRAGRDGLDSECILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 362
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 363 QYMTDYCHTEQC 374
>gi|305664748|ref|YP_003861035.1| ATP-dependent DNA helicase recQ [Maribacter sp. HTCC2170]
gi|88707870|gb|EAR00109.1| ATP-dependent DNA helicase recQ [Maribacter sp. HTCC2170]
Length = 736
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 164/386 (42%), Positives = 242/386 (62%), Gaps = 28/386 (7%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
++LKKYFG+S F+ Q++V++ I++ ++ V+M TG GKSLCYQLP L+ TA++VSPL
Sbjct: 15 ASLKKYFGFSQFKGLQEEVVKNIVQGKNTFVIMPTGGGKSLCYQLPALMQNGTAIIVSPL 74
Query: 63 ISLMQDQVMSLKQRGINAEF-----LGSAQTDSSVQTKAE---TGYFQLLFMTPEKACII 114
I+LM++QV ++ RGI++E+ L S+ + V+ E G +LL++ PE +
Sbjct: 75 IALMKNQVDAI--RGISSEYGIAHVLNSSLNKTEVKQVKEDITNGITKLLYVAPE--SLT 130
Query: 115 PISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFL--LG--VPFVALTAT 170
+ L AG+ AVDEAHCISEWGHDFR EY+ L RT + LG +P + LTAT
Sbjct: 131 KEVYIEFLKSAGISFVAVDEAHCISEWGHDFRPEYRNL---RTIVARLGDSIPIIGLTAT 187
Query: 171 ATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGS 230
AT KV+ DII +L + + V ASF+R NLFY V+ + VD + +K +G S
Sbjct: 188 ATPKVQEDIIKNLGITDAKVFKASFNRANLFYEVRT---KTANVDSDIIRFVKQNSGK-S 243
Query: 231 IIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGM 290
IVYC++ K VEE+++ L+ GV A YH +K R + +F+ +++ V+VAT+AFGM
Sbjct: 244 GIVYCLSRKRVEELAQVLQVNGVSAVPYHAGFDAKTRSKYQDMFLMEDVDVVVATIAFGM 303
Query: 291 GIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD-FYCGESQT 349
GIDKPDVR VIH+ PK++ESYYQE+GR GRDG C +Y+ + K + F G+
Sbjct: 304 GIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDIEKLEKFMSGKPVA 363
Query: 350 ENQ-RTAIMESLLAAQRYCLLTTCRR 374
E + A+++ ++A Y + RR
Sbjct: 364 EQEIGNALLQEVVA---YAETSMSRR 386
>gi|389806094|ref|ZP_10203234.1| ATP-dependent DNA helicase RecQ [Rhodanobacter thiooxydans LCS2]
gi|388446093|gb|EIM02139.1| ATP-dependent DNA helicase RecQ [Rhodanobacter thiooxydans LCS2]
Length = 611
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 153/377 (40%), Positives = 226/377 (59%), Gaps = 17/377 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FR Q+ V++ + E D LV+M TG GKSLCYQ+P L+ T +VVSPLI+
Sbjct: 10 LQSVFGYPSFRGQQQAVVEHLAEGGDALVLMPTGGGKSLCYQIPALLRQGTGIVVSPLIA 69
Query: 65 LMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV +L++ G+ A +L S A+ V+ + G LL++ PE+ ++ F
Sbjct: 70 LMQDQVDALREAGVAAAYLNSSLGAEAQREVERQLLAGELNLLYVAPER--LLTSRFLGL 127
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L V LFA+DEAHC+S+WGHDFR EY++L L VP +ALTATA + R +I+
Sbjct: 128 LESIEVALFAIDEAHCVSQWGHDFRPEYRELVVLHQRFPQVPRIALTATADPRTREEIVE 187
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L+ ++SFDR N+ Y V + + + + E +Q S IVYC++ + V
Sbjct: 188 RLALQEARRFVSSFDRPNIGYRVGLRHNAKRQLAEFLQGHQDE-----SGIVYCLSRRKV 242
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
++ + L + GV+A YH + + R + + F+R++ VMVAT+AFGMGIDKPDVR V
Sbjct: 243 DDTAAWLAESGVEALPYHAGLDAATRAKNQQRFLREDGVVMVATVAFGMGIDKPDVRFVA 302
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI----M 357
H P+++E YYQE+GR GRDG+ + W+ Y S+ +S+++++R + +
Sbjct: 303 HLDLPRSIEGYYQETGRAGRDGLPAEAWMIYGLSDVVTMSQMIAQSESDDERKRVERQKL 362
Query: 358 ESLLAAQRYCLLTTCRR 374
ESLLA Y T CRR
Sbjct: 363 ESLLA---YAEATDCRR 376
>gi|421098511|ref|ZP_15559180.1| ATP-dependent DNA helicase, RecQ family [Leptospira borgpetersenii
str. 200901122]
gi|410798474|gb|EKS00565.1| ATP-dependent DNA helicase, RecQ family [Leptospira borgpetersenii
str. 200901122]
Length = 620
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 163/383 (42%), Positives = 235/383 (61%), Gaps = 15/383 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKT-ALVV 59
+ S+LK+ +G S FR QK+ I+ ++ +D LV++ TG GKSL YQLP ++ + LV+
Sbjct: 12 LESSLKEIWGMSRFRIGQKESIESVLGGKDTLVILPTGGGKSLIYQLPAVLDQSSLTLVI 71
Query: 60 SPLISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPI 116
SPLI+LM+DQV SLK +GI AE+ S Q D + ++A TG ++L+++PEKA +
Sbjct: 72 SPLIALMKDQVDSLKAKGIAAEYCNSTQDDLEQLRILSRASTGKIRILYLSPEKA--LSR 129
Query: 117 SFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR-TFLLGVPFVALTATATEKV 175
+ L K +C AVDEAHC+S+WGHDFR EY++L +LR + +P VALTATAT +V
Sbjct: 130 QVFEILPKLPLCRIAVDEAHCVSQWGHDFRPEYRKLYELRDKYQHQIPIVALTATATPRV 189
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILK---SVAGAGSII 232
DI NSL LKN + SF R+NL + V+ S +EL++ +++ +G I
Sbjct: 190 IQDISNSLGLKNHTLIKGSFYRENLNFSVRFPQNETSKENELLKLLIRGNFQKTESGKAI 249
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
+YC T + VE I LK+ G K G YH +RE+ + + V+VAT AFGMG+
Sbjct: 250 IYCATRQKVESIYNFLKKNGFKVGKYHAGRSDSSREKTQNGYNIGKTNVLVATNAFGMGL 309
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ 352
D PDVR ++HY P +LESYYQE+GR GRD +S C L+Y S+ +F G+ EN
Sbjct: 310 DNPDVRLIVHYQIPASLESYYQEAGRAGRDEKSSNCILFYHPSDLVTQNFIIGK---ENN 366
Query: 353 RTAIMESLLA-AQRYCLLTTCRR 374
R E+LL+ + Y + CR+
Sbjct: 367 RKG-GETLLSFVKEYAISNRCRQ 388
>gi|300714809|ref|YP_003739612.1| ATP-dependent DNA helicase [Erwinia billingiae Eb661]
gi|299060645|emb|CAX57752.1| ATP-dependent DNA helicase [Erwinia billingiae Eb661]
Length = 608
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 149/337 (44%), Positives = 209/337 (62%), Gaps = 10/337 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+ +IQ + RDCLVVM TG GKSLCYQ+P LV LVVSPLIS
Sbjct: 16 LQETFGYQHFRPGQQSIIQASLNGRDCLVVMPTGGGKSLCYQIPALVREGLTLVVSPLIS 75
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G++A L S QT V TG +LL++ PE+ ++ +F
Sbjct: 76 LMKDQVDQLLANGVSAACLNSTQTREEQQEVMAGCRTGKVRLLYIAPER--LMMDNFLDN 133
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
LL + AVDEAHCIS+WGHDFR EY L +LR L VP +ALTATA E R DI
Sbjct: 134 LLHWNPAMLAVDEAHCISQWGHDFRPEYGALGQLRQRLPDVPVMALTATADETTRNDIAR 193
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L+L +P + I+SFDR N+ Y ++ + + ++L++ + G I+YC + V
Sbjct: 194 LLQLDDPLIQISSFDRPNIRY--TLVEKFKP-TEQLLRYVQDQRGKCG--IIYCNSRAKV 248
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ G YH M + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 249 EDTAARLQSRGLSVGAYHAGMDNAHRAQVQEAFQRDDLQIVVATVAFGMGINKPNVRFVV 308
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
H+ P+ +ESYYQE+GR GRDG+ + + Y ++ A
Sbjct: 309 HFDIPRNIESYYQETGRAGRDGLPAEALMLYDPADMA 345
>gi|332664724|ref|YP_004447512.1| ATP-dependent DNA helicase RecQ [Haliscomenobacter hydrossis DSM
1100]
gi|332333538|gb|AEE50639.1| ATP-dependent DNA helicase RecQ [Haliscomenobacter hydrossis DSM
1100]
Length = 732
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 157/383 (40%), Positives = 236/383 (61%), Gaps = 24/383 (6%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+KYFG+ F+ Q+ +IQ ++ + D V+M TG GKSLCYQLP L+ TA+V+SPLI+
Sbjct: 12 LQKYFGFDAFKGNQEAIIQNLLNRDDTFVIMPTGGGKSLCYQLPALMLEGTAIVISPLIA 71
Query: 65 LMQDQVMSLK---QRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIP-IS 117
LM++QV S++ Q A FL S+ T + V+ G +LL++ PE I
Sbjct: 72 LMKNQVDSIRGYSQSDDVAHFLNSSLTKAQMKLVKQAINDGNTKLLYIAPETLTKDENIE 131
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLG----VPFVALTATATE 173
F+ + V AVDEAHCISEWGHDFR EY+ ++R+ L G VP +ALTATAT
Sbjct: 132 FFRTV---NVSFVAVDEAHCISEWGHDFRPEYR---RIRSMLDGIGQEVPIIALTATATP 185
Query: 174 KVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIV 233
KV+ DI+ +L L++ + ++SF+R+NL+Y V+ + + V +++Q ++K + G II
Sbjct: 186 KVQSDILKNLGLRSEHAFMSSFNRENLYYEVRPKGKPEQAVRQIIQ-VIKGMPGQSGII- 243
Query: 234 YCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGID 293
Y + K EEI+K L+ +KA YH + +K R F+ +++ V+VAT+AFGMGID
Sbjct: 244 YVQSRKAAEEIAKVLQVNDIKAAPYHAGLDAKTRTRTQDEFLMEDVDVIVATIAFGMGID 303
Query: 294 KPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQR 353
KPDVR VIH+ PK++E+YYQE+GR GRDG+ C +YA + K + + + +
Sbjct: 304 KPDVRFVIHFDMPKSIENYYQETGRAGRDGLEGRCIAFYAYKDMLKLEKFLRDKPVAERE 363
Query: 354 --TAIMESLLAAQRYCLLTTCRR 374
+ +M+ ++A Y T CRR
Sbjct: 364 MGSQLMQEVMA---YAETTACRR 383
>gi|225025801|ref|ZP_03714993.1| hypothetical protein EUBHAL_00026 [Eubacterium hallii DSM 3353]
gi|224956885|gb|EEG38094.1| putative ATP-dependent DNA helicase RecQ [Eubacterium hallii DSM
3353]
Length = 667
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 144/339 (42%), Positives = 216/339 (63%), Gaps = 8/339 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
TLK YFGY RP Q+++I+ I++++D L +M TG+GKSLCYQ+P L+ +VVSPL
Sbjct: 5 ETLKHYFGYDSLRPGQQELIEGILQRKDVLGIMPTGAGKSLCYQVPALMLDGITIVVSPL 64
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFW 119
ISLM DQV +L Q G++A ++ S+ T++ ++T A G ++++++ PE+ + I F
Sbjct: 65 ISLMTDQVKALNQAGVHAAYINSSLTENQIRTALFYAAQGRYKIIYVAPER--LNTIRFL 122
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRID 178
+ + + VDEAHCIS+WG DFR Y + L P V A TATATE+V+ D
Sbjct: 123 EFACQVDISMVTVDEAHCISQWGQDFRPSYVGIADFLAQLPKRPVVSAFTATATERVKQD 182
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ SL+L+NP + FDR NLF+ V G+ + ++ + K +G I+YC T
Sbjct: 183 IMGSLRLQNPVTVVTGFDRPNLFFRVVTRKGGKETDNSVLNYVKKHEDESG--IIYCATK 240
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K+ ++I L+Q G++AG YH + + R++ F D IRVMVAT AFGMGIDK +VR
Sbjct: 241 KNADKIYGLLQQYGIEAGHYHAGLSLEERKKNQDDFTYDRIRVMVATNAFGMGIDKSNVR 300
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNF 337
+V+HY P++LE YYQE+GR GRDG + C L++++ +
Sbjct: 301 YVLHYNMPQSLEYYYQEAGRAGRDGEEAECVLFFSKQDI 339
>gi|224827278|ref|ZP_03700371.1| ATP-dependent DNA helicase RecQ [Pseudogulbenkiania ferrooxidans
2002]
gi|224600491|gb|EEG06681.1| ATP-dependent DNA helicase RecQ [Pseudogulbenkiania ferrooxidans
2002]
Length = 628
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 154/376 (40%), Positives = 219/376 (58%), Gaps = 10/376 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ L+ FGY FR Q +++ + + LV+M TG GKSLCYQ+P L+ A+VVSPL
Sbjct: 34 ALLQTVFGYPAFRGEQAEIVAHVGGGGNALVLMPTGGGKSLCYQIPALLREGVAIVVSPL 93
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQT---KAETGYFQLLFMTPEKACIIPISFW 119
I+LMQDQV +L + G+ A L SA + +A G LL++ PE+ ++ F
Sbjct: 94 IALMQDQVATLSELGVAAACLNSATAPDEARDIVRQARAGTLDLLYVAPER--LLTPRFL 151
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
L + LFA+DEAHC+S WGHDFR EY+QL L VP +ALTATA E+ R DI
Sbjct: 152 ELLNDLRIALFAIDEAHCVSHWGHDFRPEYQQLGILAERFPAVPRIALTATADEQTRADI 211
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
++ L+L V ++SFDR NLFY V + + + +Q+ +G IVYC++ K
Sbjct: 212 LHYLRLAEARVFLSSFDRPNLFYQVVEKHNAKKQLLAFIQQDYPGASG----IVYCLSRK 267
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
VE+ ++ L + G++A YH +G + R+ R F+R++ VMVAT+AFGMGIDKPDVR
Sbjct: 268 RVEDTAQWLVENGIRALPYHAGLGHEVRDRHQREFLREDGVVMVATVAFGMGIDKPDVRF 327
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAK-GDFYCGESQTENQRTAIME 358
V H PK+ E++YQESGR GRDG+ + WL Y ++ + G Q+ +
Sbjct: 328 VAHIDLPKSPENFYQESGRAGRDGLPAASWLCYGLNDMVQLTQMIEGSEMAVLQKQVELS 387
Query: 359 SLLAAQRYCLLTTCRR 374
L A +C CRR
Sbjct: 388 KLDAMLAFCETAACRR 403
>gi|161505534|ref|YP_001572646.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:- str. RSK2980]
gi|160866881|gb|ABX23504.1| hypothetical protein SARI_03699 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 615
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 156/375 (41%), Positives = 222/375 (59%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+ +I + RDCLVVM TG GKSLCYQ+P L+ +VVSPLI
Sbjct: 22 VLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLI 81
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q+ V T TG +LL++ PE+ ++ +F
Sbjct: 82 SLMKDQVDQLLANGVAAACLNSTQSREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLD 139
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R+DII
Sbjct: 140 HLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTTRLDII 199
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 200 RLLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 254
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 255 VEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 314
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I
Sbjct: 315 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPAGQLQDIERHK 373
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 374 LNAMGAFAEAQTCRR 388
>gi|291526981|emb|CBK92567.1| ATP-dependent DNA helicase, RecQ family [Eubacterium rectale
M104/1]
Length = 659
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 157/382 (41%), Positives = 225/382 (58%), Gaps = 15/382 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
TLK+YFGY R Q+++I I+ +D L +M TG+GKSLCYQLP L+ LV+SPLI
Sbjct: 6 TLKQYFGYDSLRTGQRELINGILAGQDVLGIMPTGAGKSLCYQLPALMLKGITLVISPLI 65
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDSSVQ---TKAETGYFQLLFMTPEKACIIPISFWS 120
SLM DQV +L Q G++A ++ S+ T++ ++ + A G ++++++ PE+ + F
Sbjct: 66 SLMSDQVKALNQAGVHAAYINSSLTENQIRMALSYASQGRYKIIYVAPER--LNTQRFLD 123
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDI 179
A + + VDEAHCIS+WG DFR Y ++ T L P V A TATATE+V+ DI
Sbjct: 124 FAYNADISMLTVDEAHCISQWGQDFRPSYLEIAGFLTRLPRRPIVSAFTATATERVKNDI 183
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+ SL L NP + FDR NLF+ V V RG S D + +K II YC T K
Sbjct: 184 VASLGLNNPVTMVTGFDRPNLFFRV-VTRRGGSQKDNSIINYVKKHEDESGII-YCATKK 241
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
+V+++ L + G+ AG YH + + R++ F D IRVMVAT AFGMGIDK +VR+
Sbjct: 242 NVDKLYTLLNEQGISAGRYHAGLSNDERKQNQEDFTYDRIRVMVATNAFGMGIDKSNVRY 301
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFY------CGESQTENQR 353
V+HY P++LE YYQE+GR GRDG + C L++++ + F G+ ++ Q+
Sbjct: 302 VLHYNMPQSLEYYYQEAGRAGRDGEEAECVLFFSKQDIMINKFLLQNKASAGDVASDMQK 361
Query: 354 TAIMESLLAAQ-RYCLLTTCRR 374
TA + L YC C R
Sbjct: 362 TANDQRKLQLMINYCETDKCLR 383
>gi|238793565|ref|ZP_04637189.1| ATP-dependent DNA helicase recQ [Yersinia intermedia ATCC 29909]
gi|238727155|gb|EEQ18685.1| ATP-dependent DNA helicase recQ [Yersinia intermedia ATCC 29909]
Length = 610
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 156/376 (41%), Positives = 223/376 (59%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
V L+ FGY FRP Q+++I + +DCLVVM TG GKSLCYQ+P LVT LVVSP
Sbjct: 14 VQVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVTDGLTLVVSP 73
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L G+ A L S+QT +V +G +LL++ PE+ ++ SF
Sbjct: 74 LISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQIKLLYIAPER--LVMESF 131
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+L + L AVDEAHCIS+WGHDFR EY+ L +L+ +P +ALTATA E R D
Sbjct: 132 LDQLYQWRPALLAVDEAHCISQWGHDFRPEYRALGQLKQRFPDLPVIALTATADEATRGD 191
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L L P + I+SFDR N+ Y ++ + + +D+L + + +G I+YC +
Sbjct: 192 IVRLLNLDQPLIQISSFDRPNIRY--TLVEKFKP-LDQLWRFVQDQRGKSG--IIYCNSR 246
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE+ + L+ G+ YH + ++ R + F RD+++V+VAT+AFGMGI+KP+VR
Sbjct: 247 AKVEDTTARLQSRGLSVAAYHAGLDNERRGQVQEAFQRDDLQVVVATVAFGMGINKPNVR 306
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+H+ P+T+ESYYQE+GR GRDG+ + L Y ++ A E Q+
Sbjct: 307 FVVHFDIPRTIESYYQETGRAGRDGLPAEAMLLYDPADMAWLRRCLEEKPAGAQQDIERH 366
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 367 KLNAMGAFAEAQTCRR 382
>gi|114797654|ref|YP_759271.1| ATP-dependent DNA helicase RecQ [Hyphomonas neptunium ATCC 15444]
gi|114737828|gb|ABI75953.1| ATP-dependent DNA helicase RecQ [Hyphomonas neptunium ATCC 15444]
Length = 615
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 154/324 (47%), Positives = 204/324 (62%), Gaps = 10/324 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK+ +GY FR Q+DVI+ ++E RD L V+ TG GKSLCYQ+P L+ LVVSPLI+
Sbjct: 14 LKRVYGYDAFRGLQEDVIRDVLEGRDGLAVLPTGGGKSLCYQIPALLRDGIGLVVSPLIA 73
Query: 65 LMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM DQV +LK G+ AE L S+ ++ AE G LL+++PE + + +
Sbjct: 74 LMADQVDALKLAGVRAERLDSSMDFNARTAALDAAERGEMDLLYVSPEG---LGTALADR 130
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + V L AVDEAHC+S+WGHDFR +Y+ L +L+ GVP +A+TATA + R DI+
Sbjct: 131 LARMKVSLIAVDEAHCVSQWGHDFRPDYRALGRLKGLFPGVPRLAVTATADARTRDDILT 190
Query: 182 SLKLKNPYVTIASFDRKNLFYGV--KVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
L L NP V +ASFDR NL K NR V +LV+ + AGA S IVY T
Sbjct: 191 QLNLTNPAVHVASFDRPNLILSAEPKESNRTARVV-QLVKARTGNGAGA-SGIVYAATRN 248
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
VE+++ AL + GV + YH + ++ R E R F+ +E VM AT+AFGMG+DKPDVR
Sbjct: 249 AVEDLADALDKAGVPSLAYHAGLDARVRAERQRRFLLEEGLVMCATVAFGMGVDKPDVRF 308
Query: 300 VIHYGCPKTLESYYQESGRCGRDG 323
VIH PKTLE+Y+QE GR GRDG
Sbjct: 309 VIHADPPKTLEAYWQEVGRGGRDG 332
>gi|378776821|ref|YP_005185258.1| ATP-dependent DNA helicase RecQ [Legionella pneumophila subsp.
pneumophila ATCC 43290]
gi|364507635|gb|AEW51159.1| ATP-dependent DNA helicase RecQ [Legionella pneumophila subsp.
pneumophila ATCC 43290]
Length = 608
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 155/376 (41%), Positives = 222/376 (59%), Gaps = 11/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
++ LKKYFG+ FRP Q+ +I+ +I D LV+M TG GKSLCYQ+P +V +VVSP
Sbjct: 15 LAVLKKYFGFDSFRPPQEKIIEDVISGEDVLVLMPTGGGKSLCYQIPAIVRPGVGIVVSP 74
Query: 62 LISLMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LI+LM+DQV +LK +GI A + S A+ +V + LL++ PE+ +I SF
Sbjct: 75 LIALMEDQVTALKLQGIRAAYYNSSLTAEDARNVLNQLHHNELDLLYIAPER--LISTSF 132
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+L + + LFA+DEAHCIS+WGHDFR EY L L+T +P +ALTATA ++ R D
Sbjct: 133 LDRLSECTISLFAIDEAHCISQWGHDFRPEYACLGLLKTNFPDIPMIALTATADKQTRED 192
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L + P + SF+R N+ Y KV+ + + V +L + +G I+YC T
Sbjct: 193 IVTKLNYQ-PKKYVVSFNRPNIHY--KVVPKTNA-VKQLNLFLQSDTQQSG--IIYCGTR 246
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE ++ L++LG KA YH + R E LF D I ++VAT+AFGMGIDKP+VR
Sbjct: 247 HTVEHLTAKLQELGFKARAYHAGLPHAERREVQNLFRYDRIDIVVATIAFGMGIDKPNVR 306
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+H+ PK++E YYQE+GR GRDG+ + L Y ++ A+ + E QR
Sbjct: 307 FVVHHDLPKSIEGYYQETGRAGRDGLPAKALLLYDAADSARLRSWIMNIPLEEQRHIETN 366
Query: 359 SLLAAQRYCLLTTCRR 374
L + + CRR
Sbjct: 367 KLNHMLAFAEASHCRR 382
>gi|85711574|ref|ZP_01042632.1| Superfamily II DNA helicase, RecQ [Idiomarina baltica OS145]
gi|85694726|gb|EAQ32666.1| Superfamily II DNA helicase, RecQ [Idiomarina baltica OS145]
Length = 613
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 161/374 (43%), Positives = 232/374 (62%), Gaps = 10/374 (2%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
TL FGY+ FR Q+ VIQ+++E RD LV+M TG GKSLCYQLP + +V+SPL+
Sbjct: 16 TLANVFGYTQFRAGQEAVIQQLLEGRDTLVLMPTGGGKSLCYQLPAIHQPGLTVVISPLL 75
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLMQDQV +L+ G+ AE L S + +V + + G LL+++PE+A + +F
Sbjct: 76 SLMQDQVEALQAMGVAAEALHSGLSSEQALNVLRRLQNGEVSLLYVSPERA--LQAAFIE 133
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
+L A+DEAHCIS+WGHDFR EY QL +LR L VPF+ALTATA + DII
Sbjct: 134 RLQTYQPQFIAIDEAHCISQWGHDFRPEYGQLGQLRHVLPNVPFMALTATADAATQQDII 193
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L+ PY +SFDR N+ Y V+ ++ + F + V++ ++ GA II YC + K
Sbjct: 194 ERLGLRQPYCHRSSFDRPNIRYVVQ--DKYKPF--KQVKDYVRKQKGAAGII-YCGSRKK 248
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
E+I+++L+ GV+A YH + S+ +E R F+RD++ V+VAT+AFGMGI+KP++R+V
Sbjct: 249 TEDIAESLQDAGVRAAPYHAGLASELKETTLRQFLRDDLDVVVATVAFGMGINKPNIRYV 308
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IH+ P+++ESYYQE+GR GRDG+ + L Y S+ E E++ +
Sbjct: 309 IHFDIPRSIESYYQETGRAGRDGLPAEALLLYDPSDAQWIRRILDEHDNEHRGIVERQKF 368
Query: 361 LAAQRYCLLTTCRR 374
A Q TCRR
Sbjct: 369 SAMQAMAEAQTCRR 382
>gi|429083282|ref|ZP_19146326.1| ATP-dependent DNA helicase RecQ [Cronobacter condimenti 1330]
gi|426547898|emb|CCJ72367.1| ATP-dependent DNA helicase RecQ [Cronobacter condimenti 1330]
Length = 609
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 146/337 (43%), Positives = 210/337 (62%), Gaps = 10/337 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q +I ++E RDCLVVM TG GKSLCYQ+P LV +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKTGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S Q+ +V TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLLANGVAAACLNSTQSRDEQQAVMAGCRTGQVRLLYIAPER--LMMDNFIDN 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +LR VPF+ALTATA + R DI+
Sbjct: 135 LTYWNLTMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVPFMALTATADDTTRRDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLDDPLIEISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346
>gi|423447358|ref|ZP_17424237.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG5O-1]
gi|401131354|gb|EJQ39008.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG5O-1]
Length = 705
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 151/372 (40%), Positives = 224/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ ++E +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLEGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLIQNGISATYINSSISMTEANHRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
+L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 KTLEINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + V YH M R E LF+RDE+ VM+AT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLMKAEVSVSKYHAGMSDHDRNEQQELFLRDEVSVMIATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSECILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|229116327|ref|ZP_04245717.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock1-3]
gi|423379378|ref|ZP_17356662.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG1O-2]
gi|423546120|ref|ZP_17522478.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuB5-5]
gi|423624078|ref|ZP_17599856.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD148]
gi|228667159|gb|EEL22611.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock1-3]
gi|401181933|gb|EJQ89080.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuB5-5]
gi|401257390|gb|EJR63589.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD148]
gi|401633026|gb|EJS50808.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG1O-2]
Length = 705
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 151/372 (40%), Positives = 224/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ ++E +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLEGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLIQNGISATYINSSISMTEANHRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
+L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 KTLEINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + V YH M R E LF+RDE+ VM+AT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLMKAEVSVSKYHAGMSDHDRNEQQELFLRDEVSVMIATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSECILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|120436098|ref|YP_861784.1| ATP-dependent DNA helicase RecQ [Gramella forsetii KT0803]
gi|117578248|emb|CAL66717.1| ATP-dependent DNA helicase RecQ [Gramella forsetii KT0803]
Length = 702
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 156/378 (41%), Positives = 222/378 (58%), Gaps = 17/378 (4%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ TLK+YFGY FRP QK +I + E +D LV+M TG GKS+CYQLP ++ + LV+S
Sbjct: 6 LFDTLKEYFGYENFRPLQKKIINSVFEGQDNLVIMPTGGGKSICYQLPAILLPEITLVIS 65
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQT---KAETGYFQLLFMTPEKACIIPIS 117
PLI+LM+DQV L G+ A +L S+Q ++ Q K + +LL++ PE +
Sbjct: 66 PLIALMKDQVDGLNANGVPAAYLNSSQEEADKQAIFQKIDNKEIKLLYVAPES-----LQ 120
Query: 118 FWSKLLKAG-VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
F +LL G V L A+DEAHCIS WGHDFR Y QL L+ P +ALTATA + R
Sbjct: 121 FVDRLLVDGKVSLIAIDEAHCISSWGHDFRPAYTQLGYLKNRFPSTPILALTATADKATR 180
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DI L + IASFDRKNL VK G +++ Q + + +G I+YC+
Sbjct: 181 NDICKQLNVPKAKKHIASFDRKNLSLEVKP---GIKRFEQISQFLRNRQSESG--IIYCL 235
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K EE++ LK+ G KA YH + R + FI DE +++ AT+AFGMGIDK +
Sbjct: 236 SRKTTEELASKLKRKGFKAEAYHAGIDHLNRSKIQDDFINDEKQIICATIAFGMGIDKSN 295
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
+R VIHY PK LE YYQE GR GRDG+AS L+++ ++ + + ++ E + A
Sbjct: 296 IRWVIHYNMPKNLEGYYQEIGRAGRDGLASDTLLFHSYADVIQLQKFASNAKNEEVQLAK 355
Query: 357 MESLLAAQRYCLLTTCRR 374
++ + ++Y +CRR
Sbjct: 356 LDRM---KQYSEALSCRR 370
>gi|386389497|ref|ZP_10074311.1| ATP-dependent DNA helicase RecQ [Haemophilus paraphrohaemolyticus
HK411]
gi|385695267|gb|EIG25829.1| ATP-dependent DNA helicase RecQ [Haemophilus paraphrohaemolyticus
HK411]
Length = 601
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 154/377 (40%), Positives = 219/377 (58%), Gaps = 14/377 (3%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ L+ FGY FR Q++VI+ + +D V+M TG GKSLCYQ+P L LV+SPL
Sbjct: 9 TVLQNVFGYQQFRQGQQEVIESTLAGKDTFVIMTTGGGKSLCYQVPALCLEGITLVISPL 68
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLM+DQV L GI A +L S QT +V+ KA G +LL+++PEK ++ F+
Sbjct: 69 ISLMKDQVDQLLTNGIEAAYLNSTQTLEEQRAVEQKALNGQLKLLYLSPEK--VMTQGFY 126
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+ + AVDEAHC+S+WGHDFR EY L LR +P +ALTATA R DI
Sbjct: 127 HFISHCKISFIAVDEAHCVSQWGHDFRPEYTLLGNLRNTFPNIPLMALTATADPTTRADI 186
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG--AGSIIVYCMT 237
++ L+L +P+ + SFDR N+ Y V+ + F + ++++ K +AG S IVYC +
Sbjct: 187 LHHLRLNDPHTYLGSFDRPNIRYTVQ-----EKF--KPMEQLAKFIAGQKGKSGIVYCNS 239
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K VEEI++ L + YH M + RE F RD I+V+VAT+AFGMGI+K +V
Sbjct: 240 RKKVEEITEKLSARNISVMGYHAGMSVQQRETVQNAFQRDNIQVVVATIAFGMGINKSNV 299
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R V+H+ P+++ESYYQE+GR GRD + S ++Y +++A E QR
Sbjct: 300 RFVVHFDLPRSIESYYQETGRAGRDDLPSQAVMFYDPADYAWLQKMLLEEPESEQRDIKQ 359
Query: 358 ESLLAAQRYCLLTTCRR 374
L A + CRR
Sbjct: 360 HKLQAIGAFAESQICRR 376
>gi|429112524|ref|ZP_19174294.1| ATP-dependent DNA helicase RecQ [Cronobacter malonaticus 507]
gi|426313681|emb|CCK00407.1| ATP-dependent DNA helicase RecQ [Cronobacter malonaticus 507]
Length = 609
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 147/337 (43%), Positives = 210/337 (62%), Gaps = 10/337 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q +I ++E RDCLVVM TG GKSLCYQ+P LV +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKTGLTIVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S Q+ +V TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLLANGVAAACLNSTQSRDEQQAVMAGCRTGQVRLLYIAPER--LMMDNFIDT 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +LR VPFVALTATA + R DI+
Sbjct: 135 LGYWDLAMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVPFVALTATADDTTRRDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLDDPLIEISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346
>gi|410029263|ref|ZP_11279099.1| ATP-dependent DNA helicase RecQ [Marinilabilia sp. AK2]
Length = 726
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 157/377 (41%), Positives = 231/377 (61%), Gaps = 16/377 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LKK FG+S FR Q+ ++ I+ +++ V+M TG+GKSLCYQLP ++ TA+V+SPLI+
Sbjct: 9 LKKIFGFSQFRGNQEPIVDNILGQKNTFVIMPTGAGKSLCYQLPAVIQEGTAIVISPLIA 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM++QV L GINA FL S S V+ + +G +LL++ PE +
Sbjct: 69 LMKNQVDQLNAFGINAHFLNSTLNKSETNKVKKEVLSGKTKLLYVAPESLTKEENILF-- 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFL-LGVPFVALTATATEKVRIDII 180
L A + A+DEAHCISEWGHDFR EY+++ + L +P +ALTATAT KV+ DI
Sbjct: 127 LKDAKLSFVAIDEAHCISEWGHDFRPEYRKIKSIIAQLGKELPIIALTATATPKVQQDIQ 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG--AGSIIVYCMTI 238
+L+++ + +SF+R NL+Y ++ +E ++I+K + S I+YC++
Sbjct: 187 RNLQMEEADLFKSSFNRTNLYYEIR-----PKLKNETKKQIIKYIKSQKGKSGIIYCLSR 241
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K VEEI++ LK G+KA YH + R + F+ +E+ V+VAT+AFGMGIDKPDVR
Sbjct: 242 KKVEEIAELLKVNGIKAAPYHAGLDQSVRIKNQDDFLNEEVDVIVATIAFGMGIDKPDVR 301
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD-FYCGESQTENQRTAIM 357
+VIHY PK+LE YYQE+GR GRDG+ C ++Y + K + F + TE + I+
Sbjct: 302 YVIHYDVPKSLEGYYQETGRAGRDGLEGHCLMFYRYEDIIKLEKFNKDKPVTERENAKIL 361
Query: 358 ESLLAAQRYCLLTTCRR 374
+AA Y + CRR
Sbjct: 362 LQEMAA--YAESSICRR 376
>gi|344201636|ref|YP_004786779.1| RecQ familyATP-dependent DNA helicase [Muricauda ruestringensis DSM
13258]
gi|343953558|gb|AEM69357.1| ATP-dependent DNA helicase, RecQ family [Muricauda ruestringensis
DSM 13258]
Length = 733
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 168/382 (43%), Positives = 233/382 (60%), Gaps = 20/382 (5%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
S+LKKYFG+S F+ Q+DVIQ I+ D V+M TG GKSLCYQLP ++ TA+VVSPL
Sbjct: 10 SSLKKYFGFSKFKGLQEDVIQNILSGNDTFVIMPTGGGKSLCYQLPAIMEEGTAIVVSPL 69
Query: 63 ISLMQDQVMSLK----QRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIP 115
I+LM++QV +++ Q GI A L S+ T + V+ E G +LL++ PE
Sbjct: 70 IALMKNQVDAIRGISEQHGI-AHVLNSSLTKTEVRQVKEDITKGVTKLLYVAPESLTKEE 128
Query: 116 ISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFL-LGVPFVALTATATEK 174
+ K +K + AVDEAHCISEWGHDFR EY+ L + L +P + LTATAT K
Sbjct: 129 NVDFLKNVK--LSFVAVDEAHCISEWGHDFRPEYRNLRGIINRLGDNIPIIGLTATATPK 186
Query: 175 VRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVY 234
V+ DII +L + + V ASF+R NLFY V+ + VD + +K G II Y
Sbjct: 187 VQEDIIKNLGMTDAKVFKASFNRPNLFYEVRPKTKD---VDADIIRFVKQNQGKSGII-Y 242
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C++ K VEE+++ L+ GV A YH +K R + +F+ +E+ V+VAT+AFGMGIDK
Sbjct: 243 CLSRKRVEELAQVLQVNGVSAVPYHAGFDAKTRSKYQDMFLMEEVDVVVATIAFGMGIDK 302
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD-FYCGESQTENQ- 352
PDVR VIH+ PK++ESYYQE+GR GRDG C YYA + K + F G+ E +
Sbjct: 303 PDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAYYAYKDVEKLEKFMSGKPVAEQEI 362
Query: 353 RTAIMESLLAAQRYCLLTTCRR 374
A+++ ++A Y + RR
Sbjct: 363 GNALLQEIVA---YAETSMSRR 381
>gi|52426136|ref|YP_089273.1| RecQ protein [Mannheimia succiniciproducens MBEL55E]
gi|52308188|gb|AAU38688.1| RecQ protein [Mannheimia succiniciproducens MBEL55E]
Length = 637
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 162/380 (42%), Positives = 222/380 (58%), Gaps = 18/380 (4%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L FGY FR Q++VIQ + RD LVVMATG+GKSLCYQ+P L LV+SP
Sbjct: 30 LDVLHSVFGYQTFRKGQQEVIQAALSGRDSLVVMATGNGKSLCYQIPALCFAGLTLVISP 89
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L GI A+FL S Q+ VQ KA +G +LL+++PEK ++ SF
Sbjct: 90 LISLMKDQVDQLLANGIAADFLNSTQSLEQQQQVQNKAISGELKLLYLSPEK--VMTNSF 147
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + V A+DEAHCIS+WGHDFR EY QL L+ P +ALTATA R D
Sbjct: 148 FQFISLCNVSFIAIDEAHCISQWGHDFRPEYTQLGGLKGCFPHAPIMALTATADSTTRQD 207
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDEL--VQEILKSVAG--AGSIIVY 234
I+ +L L P++ + SFDR N+ Y + V++ ++++ VA S IVY
Sbjct: 208 ILQNLSLNEPHLYVGSFDRPNIRY---------TLVEKFKPMEQLCNFVAAQKGKSGIVY 258
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C + VE I++ALK+ G+ A YH M S RE + F RD I+V+VAT+AFGMGI+K
Sbjct: 259 CNSRSKVERIAEALKKRGISAAAYHAGMESSQREAVQQAFQRDNIQVVVATIAFGMGINK 318
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
+VR V H+ +++E+YYQE+GR GRD + + L+Y +++A E QR
Sbjct: 319 SNVRFVAHFDLSRSIEAYYQETGRAGRDDLPAEAVLFYEPADYAWLHKILLEEPESPQRD 378
Query: 355 AIMESLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 379 IKRHKLEAIGEFAESQTCRR 398
>gi|255037353|ref|YP_003087974.1| ATP-dependent DNA helicase RecQ [Dyadobacter fermentans DSM 18053]
gi|254950109|gb|ACT94809.1| ATP-dependent DNA helicase RecQ [Dyadobacter fermentans DSM 18053]
Length = 737
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 226/373 (60%), Gaps = 11/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK+ FGYS FR Q+ +IQ I+ ++ V+M TG+GKSLCYQLP LV+ +V+SPLI+
Sbjct: 17 LKEIFGYSQFRGDQEVIIQNILLGKNTFVIMPTGAGKSLCYQLPALVSDGLTIVISPLIA 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM++QV L GINA+FL S T + V+T A G +LL++ PE +
Sbjct: 77 LMKNQVDQLTAFGINAQFLNSTLTKAEMTRVKTDALDGTLKLLYIAPE--SLTKEDNLDF 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + A+DEAHCISEWGHDFR EY+++ + + +P +ALTATAT KV+ DI
Sbjct: 135 LKRVKISFVAIDEAHCISEWGHDFRPEYRRIHGIIENIGNLPIIALTATATPKVQQDIRK 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
+L+++ +SF+RKNL+Y ++ + +L++ I + +G IVYC++ K V
Sbjct: 195 NLQMEEAETFKSSFNRKNLYYEIRP---KKDVKKQLIRYIRNNKGKSG--IVYCLSRKTV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
EE+++ L V+A YH + + R F+ +E V+VAT+AFGMGIDKPDVR VI
Sbjct: 250 EEVAELLNVNDVRALPYHAGLDANTRMANQDAFLNEECDVIVATIAFGMGIDKPDVRFVI 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
HY PK+LE YYQE+GR GRDG+ C ++Y+ + K + + + +T +R L
Sbjct: 310 HYDVPKSLEGYYQETGRAGRDGLEGNCLMFYSYDDIQKLEKF-NKDKTVTERDNARHLLN 368
Query: 362 AAQRYCLLTTCRR 374
Y L CRR
Sbjct: 369 EMVAYSTLGVCRR 381
>gi|150025301|ref|YP_001296127.1| ATP-dependent DNA helicase RecQ1 [Flavobacterium psychrophilum
JIP02/86]
gi|149771842|emb|CAL43316.1| ATP-dependent DNA helicase RecQ1 [Flavobacterium psychrophilum
JIP02/86]
Length = 731
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 160/379 (42%), Positives = 234/379 (61%), Gaps = 19/379 (5%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LKKYFG++ F+ Q+ VI+ I+ K + V+M TG GKSLCYQLP L+ G TA+VVSPLI+
Sbjct: 12 LKKYFGFNQFKGLQEQVIKSIVAKHNSFVIMPTGGGKSLCYQLPALMQGGTAIVVSPLIA 71
Query: 65 LMQDQVMSLK----QRGINAEFLGSAQTDSSV-QTKAE--TGYFQLLFMTPEKACIIPIS 117
LM++QV +++ + GI A L S+ T + + Q K + +G +LL++ PE +
Sbjct: 72 LMKNQVDAIRSLSSEAGI-AHVLNSSLTKTEIAQVKKDISSGLTKLLYVAPE--SLTKEE 128
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
+ + L K + A+DEAHCISEWGHDFR EY+ L + L VP + LTATAT KV+
Sbjct: 129 YVTFLQKEKISFVAIDEAHCISEWGHDFRPEYRNLKNIIKLLGDVPIIGLTATATPKVQE 188
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI+ +L + N ASF+R NL+Y V+ + V+ + +K G II YC++
Sbjct: 189 DILKNLDMANANTFKASFNRPNLYYEVRTKTKN---VESDIIRFIKQHKGKSGII-YCLS 244
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K VE I++ L+ G+ A YH + +K R + +F+ +++ V+VAT+AFGMGIDKPDV
Sbjct: 245 RKKVEAIAQVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGMGIDKPDV 304
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD-FYCGESQTENQRT-A 355
R VIH+ PK+LESYYQE+GR GRDG C YY+ + K + F G+ E + A
Sbjct: 305 RFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDVEKLEKFMSGKPVAEQEVGFA 364
Query: 356 IMESLLAAQRYCLLTTCRR 374
+++ ++A Y + RR
Sbjct: 365 LLQEVVA---YAETSMSRR 380
>gi|296106447|ref|YP_003618147.1| Superfamily II DNA helicase [Legionella pneumophila 2300/99 Alcoy]
gi|295648348|gb|ADG24195.1| Superfamily II DNA helicase [Legionella pneumophila 2300/99 Alcoy]
Length = 608
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 154/376 (40%), Positives = 223/376 (59%), Gaps = 11/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
++ LKKYFG+ FRP Q+ +I+ +I D LV+M TG GKSLCYQ+P +V +VVSP
Sbjct: 15 LAVLKKYFGFDSFRPPQEKIIEDVISGEDVLVLMPTGGGKSLCYQIPAIVRPGVGIVVSP 74
Query: 62 LISLMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LI+LM+DQV +LK +GI A + S A+ +V + LL++ PE+ +I SF
Sbjct: 75 LIALMEDQVTALKLQGIRAAYYNSSLTAEEARNVLNQLHHNELDLLYIAPER--LISTSF 132
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+L + + LFA+DEAHCIS+WGHDFR EY L L+T +P +ALTATA ++ R D
Sbjct: 133 LDRLSECTISLFAIDEAHCISQWGHDFRPEYACLGLLKTNFPDIPMIALTATADKQTRED 192
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L + P + SF+R N+ Y KV+ + + V +L + +G I+YC T
Sbjct: 193 IVTKLNYQ-PKKYVVSFNRPNIHY--KVVPKTNA-VKQLNLFLQSDTQQSG--IIYCGTR 246
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE ++ L++LG+KA YH + R E LF D I ++VAT+AFGMGIDKP+VR
Sbjct: 247 HTVEHLTAKLQELGLKARAYHAGLSHTERREVQNLFRYDRIDIVVATIAFGMGIDKPNVR 306
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+H+ PK++E YYQE+GR GRDG+ + L Y ++ A+ + + QR
Sbjct: 307 FVVHHDLPKSIEGYYQETGRAGRDGLPAKALLLYDAADSARLRSWIMNIPLDEQRHIETN 366
Query: 359 SLLAAQRYCLLTTCRR 374
L + + CRR
Sbjct: 367 KLNHMLAFAEASHCRR 382
>gi|113971918|ref|YP_735711.1| ATP-dependent DNA helicase RecQ [Shewanella sp. MR-4]
gi|113886602|gb|ABI40654.1| ATP-dependent DNA helicase RecQ [Shewanella sp. MR-4]
Length = 607
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 151/373 (40%), Positives = 227/373 (60%), Gaps = 11/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L + FGY FR Q++VI+R+ DCLV+M TG GKSLCYQLP L+ +VVSPLIS
Sbjct: 17 LAQVFGYRDFRDGQREVIERVCSGEDCLVIMPTGGGKSLCYQLPALLMPGITIVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT-DSSVQT--KAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV SL Q G+NA +L S+Q + SV+ + G +LL+++PE+ ++ F +
Sbjct: 77 LMKDQVDSLLQTGVNAAYLNSSQPREQSVEVLRQLHRGELKLLYVSPER--LLTADFIER 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
+ + +FA+DEAHCIS+WGHDFR EY L +L+ VP +ALTATA + R +I
Sbjct: 135 MRSLPLSMFAIDEAHCISQWGHDFRPEYAALGQLKQLFPHVPMMALTATADQATRQNICE 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L + NP+ ++SFDR N+ Y V + ++L Q +L+ +G IVYC + + V
Sbjct: 195 RLGI-NPFKLLSSFDRPNIRYTVA---EKLNAANQLRQFLLQQNGSSG--IVYCSSRRRV 248
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
+E+++ L G A YH M + R E F++D+I ++VAT+AFGMGI+K +VR V+
Sbjct: 249 DEVAERLTLQGFHAKAYHAGMTPQERGEVQDSFLKDQIDIVVATVAFGMGINKSNVRFVV 308
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
HY PK++E+YYQE+GR GRDG+ + ++ + ++ + +S+ Q+ L
Sbjct: 309 HYDIPKSIEAYYQETGRAGRDGLEAEAFMLFDPADIGRVRHLIEQSEPGPQQQVDFHKLN 368
Query: 362 AAQRYCLLTTCRR 374
+ TCRR
Sbjct: 369 TMAAFAEAQTCRR 381
>gi|238786204|ref|ZP_04630153.1| ATP-dependent DNA helicase recQ [Yersinia bercovieri ATCC 43970]
gi|238712894|gb|EEQ04957.1| ATP-dependent DNA helicase recQ [Yersinia bercovieri ATCC 43970]
Length = 610
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 156/376 (41%), Positives = 223/376 (59%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
V L+ FGY FRP Q+++I +E +DCLVVM TG GKSLCYQ+P LVT LVVSP
Sbjct: 14 VQVLRDTFGYQQFRPGQQEIINATLEGQDCLVVMPTGGGKSLCYQIPALVTDGLTLVVSP 73
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L G+ A L S+QT +V +G +LL++ PE+ ++ SF
Sbjct: 74 LISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQIKLLYIAPER--LVMESF 131
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+L + L AVDEAHCIS+WGHDFR EY+ L +L+ +P +ALTATA E R D
Sbjct: 132 LDQLHQWRPALLAVDEAHCISQWGHDFRPEYRALGQLKQRFPHLPVIALTATADEATRGD 191
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L L P + ++SFDR N+ Y ++ + + +D+L + + +G I+YC +
Sbjct: 192 IVRLLNLHQPLIQVSSFDRPNIRY--TLVEKFKP-LDQLWRFVQDQRGKSG--IIYCNSR 246
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE+ + L+ G+ YH + ++ R F RD+++V+VAT+AFGMGI+KP+VR
Sbjct: 247 AKVEDTTARLQSRGLSVAAYHAGLDNERRAHVQEAFQRDDLQVVVATVAFGMGINKPNVR 306
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+H+ P+T+ESYYQE+GR GRDG+ + L Y ++ A E Q+
Sbjct: 307 FVVHFDIPRTIESYYQETGRAGRDGLPAEAVLLYDPADMAWLRRCLEEKPAGAQQDIERH 366
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 367 KLNAMGAFAEAQTCRR 382
>gi|22124312|ref|NP_667735.1| ATP-dependent DNA helicase RecQ [Yersinia pestis KIM10+]
gi|45442967|ref|NP_994506.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Microtus
str. 91001]
gi|51594557|ref|YP_068748.1| ATP-dependent DNA helicase RecQ [Yersinia pseudotuberculosis IP
32953]
gi|108806187|ref|YP_650103.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Antiqua]
gi|108810297|ref|YP_646064.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Nepal516]
gi|145600700|ref|YP_001164776.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Pestoides F]
gi|153947607|ref|YP_001399215.1| ATP-dependent DNA helicase RecQ [Yersinia pseudotuberculosis IP
31758]
gi|153997111|ref|ZP_02022244.1| ATP-dependent DNA helicase [Yersinia pestis CA88-4125]
gi|162418857|ref|YP_001605148.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Angola]
gi|165926240|ref|ZP_02222072.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165939115|ref|ZP_02227666.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Orientalis
str. IP275]
gi|166011675|ref|ZP_02232573.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166213635|ref|ZP_02239670.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167401854|ref|ZP_02307342.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167421077|ref|ZP_02312830.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167426281|ref|ZP_02318034.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|167469646|ref|ZP_02334350.1| ATP-dependent DNA helicase RecQ [Yersinia pestis FV-1]
gi|218930836|ref|YP_002348711.1| ATP-dependent DNA helicase RecQ [Yersinia pestis CO92]
gi|229837162|ref|ZP_04457327.1| ATP-dependent DNA helicase [Yersinia pestis Pestoides A]
gi|229839522|ref|ZP_04459681.1| ATP-dependent DNA helicase [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229900085|ref|ZP_04515222.1| ATP-dependent DNA helicase [Yersinia pestis biovar Orientalis str.
India 195]
gi|229900469|ref|ZP_04515598.1| ATP-dependent DNA helicase [Yersinia pestis Nepal516]
gi|270488824|ref|ZP_06205898.1| ATP-dependent DNA helicase RecQ [Yersinia pestis KIM D27]
gi|294505497|ref|YP_003569559.1| ATP-dependent DNA helicase [Yersinia pestis Z176003]
gi|384123966|ref|YP_005506586.1| ATP-dependent DNA helicase [Yersinia pestis D106004]
gi|384127827|ref|YP_005510441.1| ATP-dependent DNA helicase [Yersinia pestis D182038]
gi|384138308|ref|YP_005521010.1| ATP-dependent DNA helicase RecQ [Yersinia pestis A1122]
gi|384413065|ref|YP_005622427.1| ATP-dependent DNA helicase [Yersinia pestis biovar Medievalis str.
Harbin 35]
gi|420549046|ref|ZP_15046797.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-01]
gi|420554379|ref|ZP_15051553.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-02]
gi|420560006|ref|ZP_15056434.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-03]
gi|420565382|ref|ZP_15061272.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-04]
gi|420581390|ref|ZP_15075799.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-07]
gi|420586787|ref|ZP_15080681.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-08]
gi|420591869|ref|ZP_15085252.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-09]
gi|420597248|ref|ZP_15090090.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-10]
gi|420602944|ref|ZP_15095145.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-11]
gi|420608335|ref|ZP_15100039.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-12]
gi|420613725|ref|ZP_15104865.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-13]
gi|420619086|ref|ZP_15109540.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-14]
gi|420624397|ref|ZP_15114328.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-15]
gi|420629378|ref|ZP_15118846.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-16]
gi|420639815|ref|ZP_15128223.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-25]
gi|420645253|ref|ZP_15133196.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-29]
gi|420650581|ref|ZP_15137995.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-32]
gi|420661646|ref|ZP_15147913.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-36]
gi|420666997|ref|ZP_15152736.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-42]
gi|420671856|ref|ZP_15157169.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-45]
gi|420682761|ref|ZP_15167043.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-47]
gi|420688171|ref|ZP_15171857.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-48]
gi|420693441|ref|ZP_15176465.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-52]
gi|420699163|ref|ZP_15181511.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-53]
gi|420705063|ref|ZP_15186161.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-54]
gi|420710327|ref|ZP_15190893.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-55]
gi|420721372|ref|ZP_15200506.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-58]
gi|420726804|ref|ZP_15205306.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-59]
gi|420732302|ref|ZP_15210251.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-60]
gi|420737293|ref|ZP_15214760.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-61]
gi|420742774|ref|ZP_15219685.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-63]
gi|420753919|ref|ZP_15229361.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-65]
gi|420765089|ref|ZP_15238752.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-71]
gi|420780906|ref|ZP_15252870.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-88]
gi|420797138|ref|ZP_15267335.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-91]
gi|420802233|ref|ZP_15271911.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-92]
gi|420812973|ref|ZP_15281585.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-94]
gi|420818445|ref|ZP_15286557.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-95]
gi|420823785|ref|ZP_15291325.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-96]
gi|420828848|ref|ZP_15295891.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-98]
gi|420834430|ref|ZP_15300927.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-99]
gi|420839377|ref|ZP_15305399.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-100]
gi|420844579|ref|ZP_15310118.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-101]
gi|420850225|ref|ZP_15315189.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-102]
gi|420855965|ref|ZP_15320020.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-103]
gi|420861052|ref|ZP_15324517.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-113]
gi|421765358|ref|ZP_16202143.1| ATP-dependent DNA helicase RecQ [Yersinia pestis INS]
gi|21957085|gb|AAM83986.1|AE013640_5 ATP-dependent DNA helicase [Yersinia pestis KIM10+]
gi|45437834|gb|AAS63383.1| ATP-dependent DNA helicase [Yersinia pestis biovar Microtus str.
91001]
gi|51587839|emb|CAH19442.1| ATP-dependent DNA helicase [Yersinia pseudotuberculosis IP 32953]
gi|108773945|gb|ABG16464.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Nepal516]
gi|108778100|gb|ABG12158.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Antiqua]
gi|115349447|emb|CAL22420.1| ATP-dependent DNA helicase [Yersinia pestis CO92]
gi|145212396|gb|ABP41803.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Pestoides F]
gi|149289417|gb|EDM39495.1| ATP-dependent DNA helicase [Yersinia pestis CA88-4125]
gi|152959102|gb|ABS46563.1| ATP-dependent DNA helicase RecQ [Yersinia pseudotuberculosis IP
31758]
gi|162351672|gb|ABX85620.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Angola]
gi|165912888|gb|EDR31514.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Orientalis
str. IP275]
gi|165921764|gb|EDR38961.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165989444|gb|EDR41745.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166205308|gb|EDR49788.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166961206|gb|EDR57227.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167048747|gb|EDR60155.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167054800|gb|EDR64604.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|229682488|gb|EEO78575.1| ATP-dependent DNA helicase [Yersinia pestis Nepal516]
gi|229686865|gb|EEO78944.1| ATP-dependent DNA helicase [Yersinia pestis biovar Orientalis str.
India 195]
gi|229695888|gb|EEO85935.1| ATP-dependent DNA helicase [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229706105|gb|EEO92114.1| ATP-dependent DNA helicase [Yersinia pestis Pestoides A]
gi|262363562|gb|ACY60283.1| ATP-dependent DNA helicase [Yersinia pestis D106004]
gi|262367491|gb|ACY64048.1| ATP-dependent DNA helicase [Yersinia pestis D182038]
gi|270337328|gb|EFA48105.1| ATP-dependent DNA helicase RecQ [Yersinia pestis KIM D27]
gi|294355956|gb|ADE66297.1| ATP-dependent DNA helicase [Yersinia pestis Z176003]
gi|320013569|gb|ADV97140.1| ATP-dependent DNA helicase [Yersinia pestis biovar Medievalis str.
Harbin 35]
gi|342853437|gb|AEL71990.1| ATP-dependent DNA helicase RecQ [Yersinia pestis A1122]
gi|391421158|gb|EIQ83878.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-01]
gi|391421371|gb|EIQ84073.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-02]
gi|391421448|gb|EIQ84143.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-03]
gi|391436188|gb|EIQ97169.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-04]
gi|391453252|gb|EIR12582.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-07]
gi|391453411|gb|EIR12729.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-08]
gi|391455260|gb|EIR14393.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-09]
gi|391469060|gb|EIR26879.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-10]
gi|391469818|gb|EIR27555.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-11]
gi|391471272|gb|EIR28850.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-12]
gi|391484954|gb|EIR41152.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-13]
gi|391486455|gb|EIR42485.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-15]
gi|391486548|gb|EIR42569.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-14]
gi|391501084|gb|EIR55520.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-16]
gi|391506158|gb|EIR60104.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-25]
gi|391517115|gb|EIR69950.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-29]
gi|391518917|gb|EIR71596.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-32]
gi|391531438|gb|EIR82932.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-36]
gi|391534305|gb|EIR85494.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-42]
gi|391536661|gb|EIR87623.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-45]
gi|391550077|gb|EIR99727.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-47]
gi|391550347|gb|EIR99969.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-48]
gi|391564613|gb|EIS12805.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-52]
gi|391566044|gb|EIS14081.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-53]
gi|391569386|gb|EIS16980.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-54]
gi|391579599|gb|EIS25700.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-55]
gi|391591637|gb|EIS36175.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-58]
gi|391595137|gb|EIS39212.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-60]
gi|391595868|gb|EIS39867.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-59]
gi|391609696|gb|EIS52066.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-61]
gi|391610048|gb|EIS52385.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-63]
gi|391623135|gb|EIS63973.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-65]
gi|391633409|gb|EIS72815.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-71]
gi|391648413|gb|EIS85930.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-88]
gi|391666018|gb|EIT01535.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-91]
gi|391675612|gb|EIT10109.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-92]
gi|391675850|gb|EIT10329.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-94]
gi|391689548|gb|EIT22669.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-95]
gi|391691498|gb|EIT24422.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-96]
gi|391693223|gb|EIT25990.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-98]
gi|391706602|gb|EIT38024.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-99]
gi|391707573|gb|EIT38908.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-100]
gi|391710357|gb|EIT41433.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-101]
gi|391722570|gb|EIT52360.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-102]
gi|391722697|gb|EIT52473.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-103]
gi|391723511|gb|EIT53184.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-113]
gi|411173338|gb|EKS43383.1| ATP-dependent DNA helicase RecQ [Yersinia pestis INS]
Length = 610
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 156/376 (41%), Positives = 223/376 (59%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
V L+ FGY FRP Q+++I + +DCLVVM TG GKSLCYQ+P LVT LVVSP
Sbjct: 14 VQVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVTDGLTLVVSP 73
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L G+ A L S+QT +V +G +LL++ PE+ ++ SF
Sbjct: 74 LISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQIKLLYIAPER--LVMESF 131
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+L + L AVDEAHCIS+WGHDFR EY+ L +L+ +P +ALTATA E R D
Sbjct: 132 LDQLYQWRPALLAVDEAHCISQWGHDFRPEYRALGQLKQRFPDLPVIALTATADEATRGD 191
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L L P + I+SFDR N+ Y ++ + + +D+L + + +G I+YC +
Sbjct: 192 IVRLLNLDQPLIQISSFDRPNIRY--TLVEKFKP-LDQLWRFVQDQRGKSG--IIYCNSR 246
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE+ + L+ G+ YH + ++ R + F RD+++V+VAT+AFGMGI+KP+VR
Sbjct: 247 AKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFGMGINKPNVR 306
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+H+ P+T+ESYYQE+GR GRDG+ + L Y ++ A E Q+
Sbjct: 307 FVVHFDIPRTIESYYQETGRAGRDGLPAEAVLLYDPADMAWLRRCLEEKPAGAQQDIERH 366
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 367 KLNAMGAFAEAQTCRR 382
>gi|393759811|ref|ZP_10348623.1| ATP-dependent DNA helicase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
gi|393161623|gb|EJC61685.1| ATP-dependent DNA helicase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
Length = 608
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 160/377 (42%), Positives = 224/377 (59%), Gaps = 10/377 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L++ FGY FR Q ++I+ +I+ D LV+M TG GKSLCYQ+P LV T +VVSP
Sbjct: 6 LEVLQEVFGYDSFRGSQHEIIETLIQGGDALVLMPTGGGKSLCYQIPALVRPGTGVVVSP 65
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQ---TDSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LI+LMQDQV +L + G+NA +L S Q T V+ + TG LL++ PE+ ++
Sbjct: 66 LIALMQDQVDALTELGVNAAYLNSTQDWQTAREVEREFLTGQLDLLYVAPER--LLTDRC 123
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
L + + LFA+DEAHC+S+WGHDFR EY LD L GVP VALTATAT+ R++
Sbjct: 124 LDLLARGQISLFAIDEAHCVSQWGHDFRPEYLGLDLLAQRWPGVPRVALTATATQLTRVE 183
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I LKL+ +ASFDR N+ Y + N + + +QE AG IVYC++
Sbjct: 184 IAQRLKLEQARHFVASFDRPNICYRIIEKNEVRKQLLSFIQEEHAGDAG----IVYCLSR 239
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE+ ++ L + G+ A YH + ++ R F+R+E VMVAT+AFGMG++KPDVR
Sbjct: 240 SRVEDTAEFLCKNGIHALPYHAGLDAQQRAINQARFLREEGVVMVATIAFGMGVNKPDVR 299
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTE-NQRTAIM 357
V H PK++E YYQE+GR GRDG A+ WL Y + + +SQ + R
Sbjct: 300 FVAHIDLPKSVEGYYQETGRAGRDGEAATAWLAYGLQDVVQLHRMINQSQGDAAHRRQQG 359
Query: 358 ESLLAAQRYCLLTTCRR 374
++L A C +CRR
Sbjct: 360 QALDAMLGLCETISCRR 376
>gi|149191369|ref|ZP_01869621.1| ATP-dependent DNA helicase RecQ [Vibrio shilonii AK1]
gi|148834786|gb|EDL51771.1| ATP-dependent DNA helicase RecQ [Vibrio shilonii AK1]
Length = 611
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 154/373 (41%), Positives = 219/373 (58%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FRP Q++VI IE D LV+M TG GKSLCYQ+P LV LV+SPLIS
Sbjct: 20 LESVFGYQEFRPGQQEVIDSAIEGNDGLVIMPTGGGKSLCYQIPALVRSGITLVISPLIS 79
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV LK G+ AE + S Q+ + + + G +L++++PE+ ++ F +
Sbjct: 80 LMKDQVDQLKADGVAAECINSTQSKETLIDIYRRMNNGQLKLIYVSPER--VLMHDFIER 137
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +L+ + VP VALTATA + R DII+
Sbjct: 138 LEHLELSMIAVDEAHCISQWGHDFRPEYAALGRLKEWFPFVPMVALTATADDATRKDIIH 197
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L NP+ + SFDR N+ Y + V ++V+ + ++ G+G I+YC + K V
Sbjct: 198 RLNLNNPHEYLGSFDRPNIRY---TLVEKHKPVSQIVRFLGENKGGSG--IIYCGSRKKV 252
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E +++ L V+A YH M R F RD+I+V+VAT+AFGMGI+KP+VR V
Sbjct: 253 EMLTEKLCANHVRAAGYHAGMDMDERAYVQDAFQRDDIQVVVATVAFGMGINKPNVRFVA 312
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + + Y ++ E + Q+ L
Sbjct: 313 HFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADIGWLRRMLDEKEEGPQKQVESHKLN 372
Query: 362 AAQRYCLLTTCRR 374
A + TCRR
Sbjct: 373 AMNAFAEAQTCRR 385
>gi|123494887|ref|XP_001326616.1| ATP-dependent DNA helicase, RecQ family protein [Trichomonas
vaginalis G3]
gi|121909533|gb|EAY14393.1| ATP-dependent DNA helicase, RecQ family protein [Trichomonas
vaginalis G3]
Length = 1447
Score = 285 bits (730), Expect = 2e-74, Method: Composition-based stats.
Identities = 156/382 (40%), Positives = 229/382 (59%), Gaps = 15/382 (3%)
Query: 6 KKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISL 65
KK F +S FR Q+D I + D V+M TG GKSLCYQLP + +V+SPLISL
Sbjct: 359 KKVFKHSHFRGRQRDAIAAALNGEDVFVLMPTGGGKSLCYQLPGFIQMGVTIVISPLISL 418
Query: 66 MQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS---FW 119
+QDQV SL + G++A G T + + K G + LFMTPEK + I+
Sbjct: 419 IQDQVRSLTELGLDAMAYGQETTAADYNEIVRKINNGRLRFLFMTPEKIMMGSINTRFIG 478
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
S K + F +D+AHC+S+WGHDFR +Y QL L+T +P +ALTATAT+ V+ DI
Sbjct: 479 SIYEKKRLTRFVIDKAHCVSQWGHDFRPDYTQLGVLKTMYPDIPIMALTATATDAVQRDI 538
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
L ++N +V +SF+R N+FY +VI + ++ DE+++ I + I++CMT
Sbjct: 539 KEILNIRNCHVFKSSFNRPNIFY--EVIQKEENSKDEMIRWIKAHGYENSTGIIFCMTTP 596
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
+ +S+ + G YHG+M + R++ +++ ++IRV+VAT+AFGMGIDKPDVR+
Sbjct: 597 ETVNLSQYMNTKGFNTAYYHGKMENADRKKVQEMWMNNQIRVIVATLAFGMGIDKPDVRY 656
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ-----RT 354
VIH P++LE+YYQESGR GRDG S C L+++ + A+ +++E Q R
Sbjct: 657 VIHMTMPRSLEAYYQESGRAGRDGKQSHCLLFFSMGDKARVHRLISYTESEEQIKNKDRL 716
Query: 355 AIMESLLA--AQRYCLLTTCRR 374
+ E+LL A+ TTCRR
Sbjct: 717 EVEENLLEHMAEYGLDKTTCRR 738
>gi|343083870|ref|YP_004773165.1| ATP-dependent DNA helicase RecQ [Cyclobacterium marinum DSM 745]
gi|342352404|gb|AEL24934.1| ATP-dependent DNA helicase RecQ [Cyclobacterium marinum DSM 745]
Length = 709
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 156/379 (41%), Positives = 223/379 (58%), Gaps = 14/379 (3%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ LKK++GY FR Q+ VI+++IEK+DC+ +M TG+GKS+CYQ+P +V LV+SP
Sbjct: 4 IDVLKKFYGYDSFRGQQESVIRQVIEKKDCIALMPTGAGKSVCYQVPAMVLPGLTLVISP 63
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISF 118
LI+LM+DQV +L + GI A FL S S V +A G +LL++ PE+
Sbjct: 64 LIALMKDQVDALNEIGIPAAFLNSTMDISEQRYVSDQAMKGGIKLLYVAPERLFSGTHPL 123
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ L + + L AVDEAHC+S+WGHDFR EY +L LR PF+ALTATA ++ R D
Sbjct: 124 VNALKEMNLSLVAVDEAHCVSQWGHDFRPEYLKLGALRKAFPDTPFLALTATADKQTRKD 183
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I L L P I+SFDR N+ Y V + + G +LV + AG IVYC++
Sbjct: 184 ISARLHLNKPEWFISSFDRPNITYRVTLRSDG---FGKLVDFLQHRPNDAG--IVYCLSR 238
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K VE + L G A YH + + R+E FI+DE++++VAT+AFGMGIDK +VR
Sbjct: 239 KSVENTAAKLNANGFSALPYHAGLSKENRQENQEKFIKDEVKIIVATIAFGMGIDKSNVR 298
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTEN---QRTA 355
V+H P+ +ESYYQE+GR GRDG+ L+Y+ + + E A
Sbjct: 299 FVVHTNMPQNIESYYQETGRAGRDGLPGEALLFYSLGDSITLKRMIESADNEEYVRHMKA 358
Query: 356 IMESLLAAQRYCLLTTCRR 374
M++++A +C +CRR
Sbjct: 359 KMDTMVA---FCQTKSCRR 374
>gi|145345256|ref|XP_001417132.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577359|gb|ABO95425.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 465
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 170/390 (43%), Positives = 228/390 (58%), Gaps = 22/390 (5%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+TLK FG FRP Q++V++ ++ RD V +TGSGKSL YQL +GK+A+VVSPL
Sbjct: 54 ATLKARFGLDAFRPGQREVVEAVLAGRDACVFWSTGSGKSLPYQLAAFASGKSAVVVSPL 113
Query: 63 ISLMQDQVMSLK--------QRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACII 114
ISLMQDQV +L + G A FLGSAQ D + + G +++++ TPEK
Sbjct: 114 ISLMQDQVTALNNTVGRGDGKDGDVAVFLGSAQMDHGAEARVFEGAYEIVYCTPEK-LTA 172
Query: 115 PISFWSKL----LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTAT 170
SF + L + + L A+DEAHCIS WGHDFR Y QL LR + VP +ALTAT
Sbjct: 173 SDSFLNGLKSLAARGRLGLIAIDEAHCISAWGHDFRPSYTQLHMLRDAIPNVPIMALTAT 232
Query: 171 ATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVD-ELVQEILKSVAGAG 229
A VR DI L+L++PYV++ S DR NL + V+ R D + + E +++ A
Sbjct: 233 AVRHVRDDISKILRLRDPYVSVNSVDRTNLH--INVVRRTDFSRDLDYIVERVRAGARVS 290
Query: 230 SIIVYCMTIKDVEEISKALKQ-LGVK-AGTYHGQMGSKAREEAHRLFIRDEIRVMVATMA 287
IVYC TI +V +++ ALKQ LG YHGQM R +AH F+ V+VAT A
Sbjct: 291 PAIVYCPTIAEVVKVAGALKQRLGDDVVRMYHGQMSPPERHDAHMDFLTSRSPVIVATTA 350
Query: 288 FGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAK--GDFYCG 345
FGMGIDKPDVR + G KT+E +YQ+ GR GRDG+AS + + +F + DFY
Sbjct: 351 FGMGIDKPDVRAITLLGASKTMEEFYQQIGRAGRDGLASEVSMLFTDGDFTRYASDFYT- 409
Query: 346 ESQTENQRTAIMESLLAAQRYCL-LTTCRR 374
+ T R A +S A + + L TCRR
Sbjct: 410 KDLTPQARDAQAKSTNALKEFALNRETCRR 439
>gi|119943986|ref|YP_941666.1| ATP-dependent DNA helicase RecQ [Psychromonas ingrahamii 37]
gi|119862590|gb|ABM02067.1| ATP-dependent DNA helicase RecQ [Psychromonas ingrahamii 37]
Length = 602
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 150/373 (40%), Positives = 223/373 (59%), Gaps = 18/373 (4%)
Query: 9 FGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQD 68
FGY+ FR Q+ +I ++ E RD LVVM TG GKSLC+Q+P LV V+SPLISLM+D
Sbjct: 17 FGYNEFREGQELIINQLCEGRDALVVMPTGGGKSLCFQIPALVKPGICFVISPLISLMKD 76
Query: 69 QVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKA 125
QV +L+ G+ A +L S+ Q + V +G +L++M PE+ ++ F S+L
Sbjct: 77 QVDALRACGVAAAYLNSSLSYQQQNQVLNDMHSGQLKLVYMAPER--LLRPDFLSRLDNL 134
Query: 126 GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKL 185
+ LFA+DEAHCIS+WGHDFR EY L +L+ +P VALTATA + DI+ L+
Sbjct: 135 PINLFAIDEAHCISQWGHDFRPEYALLGQLKQRFPDIPLVALTATADYATQQDILARLQF 194
Query: 186 KNPYVTIASFDRKNLFYGV----KVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
+P + I SFDR N+ Y + + +N+ +++DE E S I+YC + +
Sbjct: 195 NDPLIAIHSFDRPNIEYLLIEKYRPLNQLANYLDEHKNE---------SGIIYCTSRRRT 245
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
EE+++ L+ G+ YH M + R+ LFI+D++ ++VAT+AFGMGIDKP+VR V+
Sbjct: 246 EELAEKLRVKGLSVRCYHAGMMIEERQSVQDLFIKDKVDIVVATVAFGMGIDKPNVRFVV 305
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
HY PK +ESYYQE+GR GRDG+ + L+Y ++ + ++ E Q+ + L
Sbjct: 306 HYEIPKNIESYYQETGRAGRDGLPAQAMLFYDPADAGRVRSMLEKNTNEQQQRIELHKLN 365
Query: 362 AAQRYCLLTTCRR 374
+ TCRR
Sbjct: 366 TMVAFAEAQTCRR 378
>gi|313677434|ref|YP_004055430.1| ATP-dependent DNA helicase recQ [Marivirga tractuosa DSM 4126]
gi|312944132|gb|ADR23322.1| ATP-dependent DNA helicase RecQ [Marivirga tractuosa DSM 4126]
Length = 725
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 150/374 (40%), Positives = 231/374 (61%), Gaps = 13/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK+ FGY+ FR Q+ ++Q +I ++ V+M TG+GKSLCYQLP + TALVVSPLI+
Sbjct: 13 LKEVFGYNQFRGNQELIMQNLINGKNTFVIMPTGAGKSLCYQLPAISREGTALVVSPLIA 72
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM++QV +L G+NA FL S T + V+ + +G +LL++ PE +
Sbjct: 73 LMKNQVDTLVALGVNAAFLNSTLTKTETKRVKKEVMSGNLKLLYVAPE--SLTKEENVEF 130
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L +A + A+DEAHCISEWGHDFR EY+++ + + +P +ALTATAT KV++DI
Sbjct: 131 LKQANISFAAIDEAHCISEWGHDFRPEYRRIKSILQQISNIPIIALTATATPKVQLDIQK 190
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
+L ++ V +SF+R+NL+Y V+ N+ + +L++ + + G ++YC++ K V
Sbjct: 191 NLNMEEANVFKSSFNRENLYYEVRPKNQAKK---QLIRFLNERKGKCG--VIYCLSRKKV 245
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
EEI++ L G A YH + R + F+ +++ ++VAT+AFGMGIDKPDVR VI
Sbjct: 246 EEIAEFLNVNGFNAAPYHAGLEGATRMKNQDDFLNEDVDIIVATIAFGMGIDKPDVRFVI 305
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD-FYCGESQTENQRTAIMESL 360
HY PK++E YYQE+GR GRDG+ C ++Y+ ++ K + F + TE + ++ L
Sbjct: 306 HYDTPKSVEGYYQETGRAGRDGLVGDCLMFYSYNDILKLEKFNKDKPVTEKENAKLL--L 363
Query: 361 LAAQRYCLLTTCRR 374
Y + CRR
Sbjct: 364 EEMSSYAESSVCRR 377
>gi|257458284|ref|ZP_05623433.1| ATP-dependent DNA helicase RecQ [Treponema vincentii ATCC 35580]
gi|257444311|gb|EEV19405.1| ATP-dependent DNA helicase RecQ [Treponema vincentii ATCC 35580]
Length = 650
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 156/375 (41%), Positives = 225/375 (60%), Gaps = 11/375 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ LK FGY+ FRP QK+VI ++ RD L VM TG GKSLCYQ+P L+ LVVSPL
Sbjct: 24 AVLKTRFGYNEFRPMQKEVIASVLSGRDTLAVMPTGGGKSLCYQIPALLFSGITLVVSPL 83
Query: 63 ISLMQDQVMSLKQRGINAEFLGSA-QTDSSVQT--KAETGYFQLLFMTPEKACIIPISFW 119
ISLMQDQV SL + G++A FL S+ + D + + ++G +L++++PE
Sbjct: 84 ISLMQDQVASLVENGVSALFLNSSLEWDEYLDAVQRIKSGSVKLVYLSPEALAAERTQSI 143
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
V +DEAHCISEWGHDFR Y ++ +R G +ALTATAT +VR DI
Sbjct: 144 LHDASVPVSCITIDEAHCISEWGHDFRPGYLEISNVRAQFSGAVCLALTATATAQVRADI 203
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+L+++ P V IA F+R N+F V+ ++ + E++ I K +G I+YC +
Sbjct: 204 TVNLRMQAPEVFIAGFNRPNIFLEVRP---KRNALREVIACIEKHSGESG--IIYCFSRN 258
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+ +++ LK G YH + + R++ + FIRD+IR+MVAT+AFGMGIDKP+VR
Sbjct: 259 QVDTLTEKLKDSGYSVLNYHAGLSDEERKDHQQQFIRDKIRIMVATVAFGMGIDKPNVRF 318
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIHY PK+LE YYQE GR GRDG+AS L Y+ + K + ++ ++++
Sbjct: 319 VIHYDLPKSLEEYYQEIGRAGRDGLASHALLLYSAGDARKIRSFFSDAADSANSERLLQA 378
Query: 360 LLAAQRYCLLTTCRR 374
+L ++ TCRR
Sbjct: 379 ML---KFASARTCRR 390
>gi|404449892|ref|ZP_11014879.1| ATP-dependent DNA helicase RecQ [Indibacter alkaliphilus LW1]
gi|403764371|gb|EJZ25272.1| ATP-dependent DNA helicase RecQ [Indibacter alkaliphilus LW1]
Length = 726
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 158/382 (41%), Positives = 233/382 (60%), Gaps = 22/382 (5%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
LK+ FG+S FR Q+ ++ ++ + V+M TG+GKSLCYQLP ++ TA+V+SPL
Sbjct: 7 ENLKRIFGFSQFRGNQEPIVDNVLRGNNTFVIMPTGAGKSLCYQLPAVIQDGTAIVISPL 66
Query: 63 ISLMQDQVMSLKQRGINAEFLGSA--QTDSS-VQTKAETGYFQLLFMTPEKACIIPISFW 119
I+LM++QV L GINA FL S +T+++ V+ + +G +LL++ PE +
Sbjct: 67 IALMKNQVDQLNAFGINAHFLNSTLNKTETNKVKKEVLSGKTKLLYVAPESLTKEENVLF 126
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLL----GVPFVALTATATEKV 175
L A + A+DEAHCISEWGHDFR EY+ K++T + +P VALTATAT KV
Sbjct: 127 --LKDAKLSFVAIDEAHCISEWGHDFRPEYR---KIKTIIAQIGSNLPIVALTATATPKV 181
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG--AGSIIV 233
+ DI +L+++ + +SF+R NL+Y V+ +E ++I+K + S I+
Sbjct: 182 QQDIQRNLQMEEADLFKSSFNRTNLYYEVR-----PKVKNETKKQIIKYIKSQKGKSGII 236
Query: 234 YCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGID 293
YC++ K VEEI+ LK G+KA YH + R + F+ +E+ V+VAT+AFGMGID
Sbjct: 237 YCLSRKKVEEIANLLKVNGIKAAPYHAGLEQNVRVKNQDDFLNEEVDVIVATIAFGMGID 296
Query: 294 KPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD-FYCGESQTENQ 352
KPDVR+VIHY PK+LE YYQE+GR GRDG+ C ++Y + K + F + TE +
Sbjct: 297 KPDVRYVIHYDVPKSLEGYYQETGRAGRDGLEGHCLMFYKYDDIVKLEKFNKDKPVTERE 356
Query: 353 RTAIMESLLAAQRYCLLTTCRR 374
I+ +AA Y + CRR
Sbjct: 357 NAKILLQEMAA--YAESSICRR 376
>gi|392373492|ref|YP_003205325.1| ATP-dependent DNA helicase RecQ [Candidatus Methylomirabilis
oxyfera]
gi|258591185|emb|CBE67480.1| ATP-dependent DNA helicase RecQ [Candidatus Methylomirabilis
oxyfera]
Length = 622
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 147/339 (43%), Positives = 207/339 (61%), Gaps = 12/339 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
T+K+ +GY P Q++ I ++ +RD +V++ TG GKSLCYQ P GK A+VVSPLI
Sbjct: 7 TVKRVWGYDALLPLQEEAIGAVLARRDSIVILPTGGGKSLCYQAPAAAMGKLAVVVSPLI 66
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFWS 120
+LM+DQV L G+ A FL S+ T + V+ G + LL++ PE+ P
Sbjct: 67 ALMKDQVDGLTTAGVPAAFLNSSLTPNERRLVEGNVANGRYHLLYVAPERLVFPPCL--- 123
Query: 121 KLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+LLK AGV FA+DEAHCIS+WGHDFR EY+QL +R V A TATAT +VR DI
Sbjct: 124 RLLKQAGVAFFAIDEAHCISQWGHDFRPEYRQLKVVREAFPDVAIHAFTATATPRVRADI 183
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
L L+ P + + SFDR NL Y V+ R + ++ + + + AG I+YC+
Sbjct: 184 ATELALREPEILVGSFDRPNLVYRVR---RRTDRLQQVTEALERHRGTAG--IIYCIRRA 238
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
+V++++ AL++ G +A YH + R FI + V+VAT+AFGMGID+ DVR+
Sbjct: 239 EVDQLTDALRRRGYRAVAYHAGLADAERRRTQDDFIAERADVVVATVAFGMGIDRSDVRY 298
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
VIH G PK++E Y QE+GR GRDG+ S C L Y+ +F
Sbjct: 299 VIHAGMPKSIEHYQQEAGRAGRDGLPSECLLLYSGGDFG 337
>gi|238750693|ref|ZP_04612192.1| ATP-dependent DNA helicase recQ [Yersinia rohdei ATCC 43380]
gi|238711083|gb|EEQ03302.1| ATP-dependent DNA helicase recQ [Yersinia rohdei ATCC 43380]
Length = 610
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 155/373 (41%), Positives = 223/373 (59%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FRP Q+++I + +DCLVVM TG GKSLCYQ+P LVT LVVSPLIS
Sbjct: 17 LRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVTEGLTLVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S+QT +V +G +LL++ PE+ ++ SF +
Sbjct: 77 LMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQIKLLYIAPER--LVMESFLDQ 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + L AVDEAHCIS+WGHDFR EY+ L +L+ +P +ALTATA E R DI+
Sbjct: 135 LHQWRPALLAVDEAHCISQWGHDFRPEYRALGQLKQRFPDLPVIALTATADEATRGDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L+NP + ++SFDR N+ Y ++ + + +D+L + + +G I+YC + V
Sbjct: 195 LLNLENPLIQVSSFDRPNIRY--TLVEKFKP-LDQLWRFVQDQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ YH + ++ R F RD+++V+VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTTARLQSRGLSVAAYHAGLDNERRAHVQEAFQRDDLQVVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+T+ESYYQE+GR GRDG+ + L Y ++ A E Q+ L
Sbjct: 310 HFDIPRTIESYYQETGRAGRDGLPAEAMLLYDPADMAWLRRCLEEKPAGAQQDIERHKLN 369
Query: 362 AAQRYCLLTTCRR 374
A + TCRR
Sbjct: 370 AMGAFAEAQTCRR 382
>gi|148360486|ref|YP_001251693.1| ATP-dependent DNA helicase RecQ [Legionella pneumophila str. Corby]
gi|148282259|gb|ABQ56347.1| ATP-dependent DNA helicase RecQ [Legionella pneumophila str. Corby]
Length = 608
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 154/376 (40%), Positives = 223/376 (59%), Gaps = 11/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
++ LKKYFG+ FRP Q+ +I+ +I D LV+M TG GKSLCYQ+P +V +VVSP
Sbjct: 15 LAVLKKYFGFDSFRPPQEKIIEDVISGEDVLVLMPTGGGKSLCYQIPAIVRRGVGIVVSP 74
Query: 62 LISLMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LI+LM+DQV +LK +GI A + S A+ +V + LL++ PE+ +I SF
Sbjct: 75 LIALMEDQVTALKLQGIRAAYYNSSLTAEEARNVLNQLHHNELDLLYIAPER--LISTSF 132
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+L + + LFA+DEAHCIS+WGHDFR EY L L+T +P +ALTATA ++ R D
Sbjct: 133 LDRLSECTISLFAIDEAHCISQWGHDFRPEYACLGLLKTNFPDIPMIALTATADKQTRED 192
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L + P + SF+R N+ Y KV+ + + V +L + +G I+YC T
Sbjct: 193 IVTKLNYQ-PKKYVVSFNRPNIHY--KVVPKTNA-VKQLNLFLQSDTQQSG--IIYCGTR 246
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE ++ L++LG+KA YH + R E LF D I ++VAT+AFGMGIDKP+VR
Sbjct: 247 HTVEHLTAKLQELGLKARAYHAGLSHTERREVQNLFRYDRIDIVVATIAFGMGIDKPNVR 306
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+H+ PK++E YYQE+GR GRDG+ + L Y ++ A+ + + QR
Sbjct: 307 FVVHHDLPKSIEGYYQETGRAGRDGLPAKALLLYDAADSARLRSWIMNIPLDEQRHIETN 366
Query: 359 SLLAAQRYCLLTTCRR 374
L + + CRR
Sbjct: 367 KLNHMLAFAEASHCRR 382
>gi|148266306|ref|YP_001233012.1| ATP-dependent DNA helicase RecQ [Geobacter uraniireducens Rf4]
gi|146399806|gb|ABQ28439.1| ATP-dependent DNA helicase RecQ [Geobacter uraniireducens Rf4]
Length = 715
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 158/383 (41%), Positives = 219/383 (57%), Gaps = 25/383 (6%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+TL K FGY+ FR Q+++++ +I D V+M TG GKSLCYQ+P L +VVSPL
Sbjct: 7 ATLLKVFGYNTFRQPQQEIVEGLIRGDDAFVIMPTGGGKSLCYQIPALHRPGVGIVVSPL 66
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTD---SSVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLM+DQV +L+ G+ A F S+ + V + L+++ PE+ P F
Sbjct: 67 ISLMKDQVDALRANGVRAAFYNSSLGEVEARRVLAELHNQALDLIYVAPERLMSEP--FL 124
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L + + LFA+DEAHC+S+WGHDFR EY QL +LR VP +ALTATA + R DI
Sbjct: 125 ERLKEMEIALFAIDEAHCVSQWGHDFRPEYVQLGRLRRLFPQVPMIALTATADAQTRGDI 184
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAG---SIIVYCM 236
I L L+ +A FDR N+ Y V+ + + FV ++ +AG G + IVY +
Sbjct: 185 IERLGLQGAACHVAGFDRPNIRY--TVMEKQKPFV-----QLTTFLAGRGRDEAGIVYAL 237
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K VEE+++ L G+ A YH + + R F RDE++V+VAT+AFGMGIDKP+
Sbjct: 238 SRKRVEEVAERLSAAGIAAAPYHAGLPDRERSRVQEAFQRDELQVVVATVAFGMGIDKPN 297
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTEN----- 351
VR V+HY PK +ESYYQE+GR GRDG+ + L F GD S EN
Sbjct: 298 VRFVVHYDLPKNIESYYQETGRSGRDGLPAEALLL-----FGYGDIAVARSLIENGGNAE 352
Query: 352 QRTAIMESLLAAQRYCLLTTCRR 374
Q + L A + TCRR
Sbjct: 353 QNRIELHKLNAMVGFAEAVTCRR 375
>gi|307609659|emb|CBW99166.1| hypothetical protein LPW_09501 [Legionella pneumophila 130b]
Length = 608
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 154/376 (40%), Positives = 223/376 (59%), Gaps = 11/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
++ LKKYFG+ FRP Q+ +I+ +I D LV+M TG GKSLCYQ+P +V +VVSP
Sbjct: 15 LAVLKKYFGFDSFRPPQEKIIEDVISGEDVLVLMPTGGGKSLCYQIPAIVRRGVGIVVSP 74
Query: 62 LISLMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LI+LM+DQV +LK +GI A + S A+ +V + LL++ PE+ +I SF
Sbjct: 75 LIALMEDQVTALKLQGIRAAYYNSSLTAEEARNVLNQLHHNELDLLYIAPER--LISTSF 132
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+L + + LFA+DEAHCIS+WGHDFR EY L L+T +P +ALTATA ++ R D
Sbjct: 133 LDRLSECTISLFAIDEAHCISQWGHDFRPEYACLGLLKTNFPDIPMIALTATADKQTRED 192
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L + P + SF+R N+ Y KV+ + + V +L + +G I+YC T
Sbjct: 193 IVTKLNYQ-PKKYVVSFNRPNIHY--KVVPKTNA-VKQLNLFLQSDTQQSG--IIYCGTR 246
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE ++ L++LG+KA YH + R E LF D I ++VAT+AFGMGIDKP+VR
Sbjct: 247 HTVEHLTAKLQELGLKARAYHAGLSHTERREVQNLFRYDRIDIVVATIAFGMGIDKPNVR 306
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+H+ PK++E YYQE+GR GRDG+ + L Y ++ A+ + + QR
Sbjct: 307 FVVHHDLPKSIEGYYQETGRAGRDGLPAKALLLYDAADSARLRSWIMNIPLDEQRHIETN 366
Query: 359 SLLAAQRYCLLTTCRR 374
L + + CRR
Sbjct: 367 KLNHMLAFAEASHCRR 382
>gi|330844596|ref|XP_003294206.1| hypothetical protein DICPUDRAFT_159167 [Dictyostelium purpureum]
gi|325075373|gb|EGC29269.1| hypothetical protein DICPUDRAFT_159167 [Dictyostelium purpureum]
Length = 849
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 155/382 (40%), Positives = 230/382 (60%), Gaps = 16/382 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LKKYFG + FRP Q ++I+ ++ D V +ATG GKSLCYQLP L+ KT V+SPL S
Sbjct: 20 LKKYFGLTTFRPKQLEIIKHTLKGYDSFVSIATGGGKSLCYQLPSLLLKKTTFVISPLKS 79
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQ-TKAETGYFQLLFMTPEKACIIPISFWSKLL 123
L+ DQ + L+ GI A L S DSS + G ++++F+TPE+ +S +
Sbjct: 80 LISDQTIKLRSLGIKAIKLSSDIKDSSKEYNDIFKGLYRIVFITPERLVNEVMSINKLVE 139
Query: 124 KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSL 183
GVCLFAVDE HC+S+WG DFR Y++LD LR VP +ALTAT+T +V DII L
Sbjct: 140 NNGVCLFAVDECHCVSQWGTDFRPSYRRLDILRNMFPNVPTMALTATSTTEVENDIIEVL 199
Query: 184 KLKNPYVTI--ASFDRKNLFYGV---KVINRGQSFVDELVQEILKSVAG-AGSIIVYCMT 237
+L+N I + +R+N+FY + N+ + +++ E KS+ G + S I+YC T
Sbjct: 200 QLQNDNFKIFRSPKNRENIFYKAIYKETENKDYEMILKIINETRKSIGGVSNSTIIYCPT 259
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
I+ ++++ L+ + + YH QM RE+ + F+ ++ V+ AT+AFGMGIDK D+
Sbjct: 260 IQTSIDLNQYLQANKILSNCYHSQMSDPQREQVLKQFLFNKTEVVCATIAFGMGIDKHDI 319
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDF---YCGESQTENQRT 354
R +IHYG K++E YYQESGR GRDG+ S+ ++++ +F KG + G QT++ +
Sbjct: 320 RVIIHYGPSKSVEEYYQESGRAGRDGLPSLSLVFFSLQDFTKGSLRINFGGNHQTKSNKI 379
Query: 355 AIMESL--LAAQRYCLLTTCRR 374
+ L + R T CRR
Sbjct: 380 DKLTQLKNIMVNR----TECRR 397
>gi|345879659|ref|ZP_08831273.1| hypothetical protein Rifp1Sym_fy00030 [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|344223322|gb|EGV49811.1| hypothetical protein Rifp1Sym_fy00030 [endosymbiont of Riftia
pachyptila (vent Ph05)]
Length = 612
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 157/378 (41%), Positives = 224/378 (59%), Gaps = 12/378 (3%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L++ FGY FR Q ++IQ++ E D LV+M TG GKSLCYQ+P L+ ++VSP
Sbjct: 8 LEILRETFGYQQFRGQQAEIIQQLSEGGDALVIMPTGGGKSLCYQIPSLLRDGVGIIVSP 67
Query: 62 LISLMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LI+LMQDQV +L + GI A FL S Q + ++T+ +G LL++ PE+ + P +
Sbjct: 68 LIALMQDQVAALNELGIQAAFLNSTLEPQAAAQIETELRSGTLDLLYLAPER-LLQPRTL 126
Query: 119 WSKLL-KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
KLL ++ + LFA+DEAHC+S+WGHDFR EY QL L+ +P +ALTATA E R
Sbjct: 127 --KLLAQSPIALFAIDEAHCVSQWGHDFRPEYIQLSLLQERFPQIPRIALTATADETTRR 184
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
+I L L+ ++ FDR N+ Y + R + + + +Q S AG IVYC++
Sbjct: 185 EIATRLGLEQAPQFVSGFDRPNIRYHIGQHERQRDALWQFLQREHPSDAG----IVYCLS 240
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K VE +S+ L G A YH + + RE+ F+++E ++VAT+AFGMGIDKPDV
Sbjct: 241 RKKVESVSEWLSNKGRSALPYHAGLPHQLREQHQARFLKEEGVIIVATIAFGMGIDKPDV 300
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQT-ENQRTAI 356
R V H PK++E+YYQE+GR GRDG + W+ Y N +S E Q+T
Sbjct: 301 RFVAHLDLPKSIEAYYQETGRAGRDGEPANAWMSYGLQNVITLRQMIEQSDAPEAQQTVE 360
Query: 357 MESLLAAQRYCLLTTCRR 374
L A C +T+CRR
Sbjct: 361 RRKLDAMLGLCEITSCRR 378
>gi|429091857|ref|ZP_19154510.1| ATP-dependent DNA helicase RecQ [Cronobacter dublinensis 1210]
gi|429099036|ref|ZP_19161142.1| ATP-dependent DNA helicase RecQ [Cronobacter dublinensis 582]
gi|426285376|emb|CCJ87255.1| ATP-dependent DNA helicase RecQ [Cronobacter dublinensis 582]
gi|426743518|emb|CCJ80623.1| ATP-dependent DNA helicase RecQ [Cronobacter dublinensis 1210]
Length = 609
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 146/342 (42%), Positives = 212/342 (61%), Gaps = 18/342 (5%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q +I ++E RDCLVVM TG GKSLCYQ+P LV +VVSPLI
Sbjct: 16 VLQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKTGLTVVVSPLI 75
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKAC----IIPI 116
SLM+DQV L G+ A L S Q+ +V +G +LL++ PE+ I +
Sbjct: 76 SLMKDQVDQLLANGVAAACLNSTQSRDEQQAVMAGCRSGQVRLLYIAPERLMMDNFIDSL 135
Query: 117 SFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
S+W+ + + AVDEAHCIS+WGHDFR EY L +LR VPF+ALTATA + R
Sbjct: 136 SYWN------LAMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVPFMALTATADDTTR 189
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DI+ L L++P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC
Sbjct: 190 RDIVRLLGLEDPLIEISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCN 244
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ VE+ + L+ G+ A YH + + R F RD+++++VAT+AFGMGI+KP+
Sbjct: 245 SRAKVEDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQIVVATVAFGMGINKPN 304
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
VR V+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A
Sbjct: 305 VRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346
>gi|229085593|ref|ZP_04217828.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock3-44]
gi|228697741|gb|EEL50491.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock3-44]
Length = 705
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 151/372 (40%), Positives = 224/372 (60%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LMDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVREDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
+L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 RALEINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNKKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E F+RDE+ VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLYKSGVSVARYHAGMNDHDRNEQQERFLRDEVSVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSECILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QHMTDYCHTEQC 373
>gi|145297285|ref|YP_001140126.1| ATP-dependent DNA helicase RecQ [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418362038|ref|ZP_12962682.1| ATP-dependent DNA helicase RecQ [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|142850057|gb|ABO88378.1| ATP-dependent DNA helicase RecQ [Aeromonas salmonicida subsp.
salmonicida A449]
gi|356686673|gb|EHI51266.1| ATP-dependent DNA helicase RecQ [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 607
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 149/376 (39%), Positives = 229/376 (60%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
++ L+ FGY FRP Q ++I++I+ RD +V+ TG GKSLC+Q+P L+ +VVSP
Sbjct: 13 LALLQAVFGYQQFRPGQLEIIEQIVAGRDAMVLKPTGGGKSLCFQIPALLRPGLGVVVSP 72
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT-DSSVQTKA--ETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV SL+ G+ A ++ SA + + +Q A G +LL+++PE+ ++ F
Sbjct: 73 LISLMKDQVDSLRANGVAAIYINSALSREEMIQNFAAMRRGEIKLLYVSPER--LLQHEF 130
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+L + + LFA+DEAHC+S+WGHDFR EY L +L+ + VP VALTATA E R D
Sbjct: 131 MDRLAELPLGLFAIDEAHCVSQWGHDFRPEYAALGRLKQWFPQVPVVALTATADEATRSD 190
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
+++ L+L +P++ ASFDR N+ Y + + + ++ ++L++ + G IVYC +
Sbjct: 191 MLHRLELNDPFIHTASFDRPNIRYSL--VEKFKA-AEQLLRYVQSQKGNCG--IVYCSSR 245
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VEE+++ L + G KA YH + R++ F++D+I ++VAT+AFGMGIDKP+VR
Sbjct: 246 NRVEEVAERLSRHGSKAAPYHAGLPLAQRQQTQDAFLKDDIEIVVATVAFGMGIDKPNVR 305
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+HY PK +ESYYQE+GR GRDG + L Y ++ + + Q
Sbjct: 306 FVVHYDIPKNIESYYQETGRAGRDGTPAEALLLYDPADIGRVRRLLDNIENPQQLQVEQY 365
Query: 359 SLLAAQRYCLLTTCRR 374
L + TCRR
Sbjct: 366 KLNVMAAFAEAQTCRR 381
>gi|260062261|ref|YP_003195341.1| ATP-dependent DNA helicase [Robiginitalea biformata HTCC2501]
gi|88783823|gb|EAR14994.1| putative ATP-dependent DNA helicase [Robiginitalea biformata
HTCC2501]
Length = 733
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 162/381 (42%), Positives = 233/381 (61%), Gaps = 18/381 (4%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
++LKKYFG+S F+ Q+DVI+ I++ RD V+M TG GKSLCYQLP L+ TA+VVSPL
Sbjct: 10 ASLKKYFGFSQFKGLQEDVIKNIVQGRDTFVIMPTGGGKSLCYQLPALIGEGTAIVVSPL 69
Query: 63 ISLMQDQVMSLKQRGIN---AEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPI 116
I+LM++QV +++ N A L S+ T V+ E +G +LL++ PE +
Sbjct: 70 IALMKNQVDAIRGVSDNDGVAHVLNSSLTKGEVKAVKEDITSGVTKLLYVAPE--SLTKE 127
Query: 117 SFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFL-LGVPFVALTATATEKV 175
+ L + A+DEAHCISEWGHDFR EY+ L + L +P +ALTATAT KV
Sbjct: 128 EYVDFLQGVTLSFVAIDEAHCISEWGHDFRPEYRNLRSIIDRLGDDIPIIALTATATPKV 187
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYC 235
+ DI+ +L + V ASF+R NL+Y V+ + VD + +K AG II YC
Sbjct: 188 QEDILKNLGIPEAEVFKASFNRPNLYYEVQPKTKN---VDADIIRFVKKNAGKSGII-YC 243
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
++ K VEE+++ L+ GV A YH +K R +F+ +E+ V+VAT+AFGMGIDKP
Sbjct: 244 LSRKRVEELAQVLQVNGVSAVPYHAGFDAKTRSRYQDMFLMEEVDVVVATIAFGMGIDKP 303
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD-FYCGESQTENQ-R 353
DVR+VIH+ PK++ESYYQE+GR GRDG C +Y+ + K + F G+ E +
Sbjct: 304 DVRYVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEKFMAGKPVAEQEIG 363
Query: 354 TAIMESLLAAQRYCLLTTCRR 374
A+++ ++A Y + RR
Sbjct: 364 NALLQEIVA---YAETSVSRR 381
>gi|411011638|ref|ZP_11387967.1| ATP-dependent DNA helicase RecQ [Aeromonas aquariorum AAK1]
Length = 611
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 148/376 (39%), Positives = 230/376 (61%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
++ L+ FGY FRP Q ++I++I+ RD LV+ TG GKSLCYQ+P L+ +VVSP
Sbjct: 17 LALLQAVFGYQQFRPGQLEIIEQIVAGRDALVLKPTGGGKSLCYQIPALLRPGLGVVVSP 76
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT-DSSVQTKA--ETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV +L+ G+ A ++ SA + + +Q A G ++++++PE+ ++ F
Sbjct: 77 LISLMKDQVDTLRANGVAAVYINSALSREEMIQNFAAMRRGEIKIVYVSPER--LLQHEF 134
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+L + + LFA+DEAHC+S+WGHDFR EY L +L+ + VP VALTATA E R D
Sbjct: 135 MDRLAELPLGLFAIDEAHCVSQWGHDFRPEYAALGRLKQWFPQVPVVALTATADEATRSD 194
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
+++ L+L +P++ ASFDR N+ Y + + + ++ ++L++ + G IVYC +
Sbjct: 195 MLHRLELNDPFIHTASFDRPNIRYSL--VEKFKA-AEQLLRYVQSQKGNCG--IVYCSSR 249
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VEE+++ L + G KA YH + + R++ F++D+I ++VAT+AFGMGIDKP+VR
Sbjct: 250 NRVEEVAERLSRHGCKAAPYHAGLPLELRQQTQEAFLKDDIEIVVATVAFGMGIDKPNVR 309
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+HY PK +ESYYQE+GR GRDG + L Y ++ + + Q
Sbjct: 310 FVVHYDIPKNIESYYQETGRAGRDGTPAEALLLYDPADIGRVRRLLDNIENPQQLQVEQY 369
Query: 359 SLLAAQRYCLLTTCRR 374
L + TCRR
Sbjct: 370 KLNVMAAFAEAQTCRR 385
>gi|117621322|ref|YP_858553.1| ATP-dependent DNA helicase RecQ [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117562729|gb|ABK39677.1| ATP-dependent DNA helicase RecQ [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 611
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 149/376 (39%), Positives = 229/376 (60%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
++ L+ FGY FRP Q ++I++I+ RD LV+ TG GKSLCYQ+P L+ +VVSP
Sbjct: 17 LALLQAVFGYQQFRPGQLEIIEQIVAGRDALVLKPTGGGKSLCYQIPALLRPGLGVVVSP 76
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT-DSSVQTKA--ETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV SL+ G+ A ++ SA + + +Q A G ++++++PE+ ++ F
Sbjct: 77 LISLMKDQVDSLRANGVAAVYINSALSREEMIQNFAAMRRGEIKIVYVSPER--LLQHEF 134
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+L + + LFA+DEAHC+S+WGHDFR EY L +L+ + VP VALTATA E R D
Sbjct: 135 MDRLAELPLGLFAIDEAHCVSQWGHDFRPEYAALGRLKQWFPQVPVVALTATADEATRSD 194
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
+++ L+L +P++ ASFDR N+ Y + + + ++ ++L++ + G IVYC +
Sbjct: 195 MLHRLELHDPFIHTASFDRPNIRYSL--VEKFKA-AEQLLRYVQSQKGNCG--IVYCSSR 249
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VEE+++ L + G KA YH + + R+ F++D+I ++VAT+AFGMGIDKP+VR
Sbjct: 250 NRVEEVAERLSRHGCKAAPYHAGLPLELRQRTQESFLKDDIEIVVATVAFGMGIDKPNVR 309
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+HY PK +ESYYQE+GR GRDG + L Y ++ + + Q
Sbjct: 310 FVVHYDIPKNIESYYQETGRAGRDGTPAEALLLYDPADIGRVRRLLDNIENPQQLQVEQY 369
Query: 359 SLLAAQRYCLLTTCRR 374
L + TCRR
Sbjct: 370 KLNVMAAFAEAQTCRR 385
>gi|387771794|ref|ZP_10127951.1| ATP-dependent DNA helicase RecQ [Haemophilus parahaemolyticus
HK385]
gi|386908179|gb|EIJ72877.1| ATP-dependent DNA helicase RecQ [Haemophilus parahaemolyticus
HK385]
Length = 601
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 155/377 (41%), Positives = 220/377 (58%), Gaps = 14/377 (3%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ L+ FGY FR Q++VI+ + +D LV+M TG GKSLCYQ+P L LV+SPL
Sbjct: 9 TILQNVFGYQQFRQGQQEVIEATLAGKDTLVIMTTGGGKSLCYQVPSLCLEGITLVISPL 68
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLM+DQV L GI A +L S+QT ++ KA +G +LL+++PEK ++ F+
Sbjct: 69 ISLMKDQVDQLLTNGIEAGYLNSSQTLEEQRVIEQKALSGQLKLLYLSPEK--VMTQGFY 126
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+ + AVDEAHC+S+WGHDFR EY L LR +P +ALTATA R DI
Sbjct: 127 HFISHCKISFIAVDEAHCVSQWGHDFRPEYTLLGNLRNTFPNIPLMALTATADPTTRADI 186
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG--AGSIIVYCMT 237
+ L+L P+ + SFDR N+ Y V+ + F + ++++ K +AG S IVYC +
Sbjct: 187 LLHLRLNEPHTYLGSFDRPNIRYTVQ-----EKF--KPMEQLAKFIAGQKGKSGIVYCNS 239
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K VEEI++ L + YH M + RE F RD I+V+VAT+AFGMGI+K +V
Sbjct: 240 RKKVEEITEKLSARNISVMGYHAGMSVQQRETVQNAFQRDNIQVVVATVAFGMGINKSNV 299
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R V+H+ P+++ESYYQE+GR GRD + S ++Y +++A E QR
Sbjct: 300 RFVVHFDLPRSIESYYQETGRAGRDDLPSQAVMFYDPADYAWLQKMLLEEPESEQRDIKQ 359
Query: 358 ESLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 360 HKLQAVGAFAESQTCRR 376
>gi|410942002|ref|ZP_11373794.1| ATP-dependent DNA helicase, RecQ family [Leptospira noguchii str.
2006001870]
gi|410782996|gb|EKR71995.1| ATP-dependent DNA helicase, RecQ family [Leptospira noguchii str.
2006001870]
Length = 624
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 163/379 (43%), Positives = 226/379 (59%), Gaps = 15/379 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKT-ALVVSPLI 63
LKK +G FR QK+ I+ +I +D L ++ TG GKSL YQ P ++ + LV+SPLI
Sbjct: 16 LKKKWGLPKFRSGQKEAIESLIAGKDTLAILPTGGGKSLIYQFPAILDETSLTLVISPLI 75
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFWS 120
+LM+DQV SLK +GI AE+ S Q D + ++A TG ++L+++PEKA + +
Sbjct: 76 ALMKDQVDSLKAKGIAAEYCNSTQDDLEQLRILSRAATGKIRILYLSPEKA--LGRQVFE 133
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR-TFLLGVPFVALTATATEKVRIDI 179
L K + AVDEAHC+S+WGHDFR EY++L +LR + +P +ALTATAT KV DI
Sbjct: 134 ILSKFPLARIAVDEAHCVSQWGHDFRPEYRKLYELRDKYPKPIPVIALTATATSKVIKDI 193
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKV----INRGQSFVDELVQEILKSVAGAGSIIVYC 235
NSL L NP + SF R+NL + V+ I+R + L+Q + ++ +G IVYC
Sbjct: 194 SNSLGLNNPTLIKGSFYRENLRFSVRFPQNEISRENELLKLLIQGNFQKIS-SGRAIVYC 252
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
T + VE + LK+ G K G YH +RE A + + V+VAT AFGMG+DKP
Sbjct: 253 ATRQKVETVYGFLKKNGFKVGKYHAGRTDSSRERAQDGYNNGKTNVLVATNAFGMGLDKP 312
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTA 355
DVR V+HY P +LESYYQE+GR GRDG +S C L+Y S+ F G+ EN R
Sbjct: 313 DVRLVVHYQVPASLESYYQEAGRAGRDGKSSDCVLFYHPSDLVTQGFIIGK---ENNRKG 369
Query: 356 IMESLLAAQRYCLLTTCRR 374
L + Y + CR+
Sbjct: 370 GETLLSHLKEYSISNKCRQ 388
>gi|390943602|ref|YP_006407363.1| ATP-dependent DNA helicase RecQ [Belliella baltica DSM 15883]
gi|390417030|gb|AFL84608.1| ATP-dependent DNA helicase RecQ [Belliella baltica DSM 15883]
Length = 725
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 157/379 (41%), Positives = 228/379 (60%), Gaps = 16/379 (4%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
LK+ FG+S FR Q+ ++ I+ + V+M TG+GKSLCYQLP ++ TA+V+SPL
Sbjct: 7 ENLKEIFGFSQFRGNQEAIVDNILGGSNTFVIMPTGAGKSLCYQLPAVIKNGTAVVISPL 66
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFW 119
I+LM++QV L GINA FL S S V+ + G +LL++ PE +
Sbjct: 67 IALMKNQVDQLNAFGINAYFLNSTLNKSETNKVKKEVLAGNTKLLYVAPE--SLTKEENV 124
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFL-LGVPFVALTATATEKVRID 178
L +A + A+DEAHCISEWGHDFR EY+++ + + +P +ALTATAT KV+ D
Sbjct: 125 KFLKEANISFVAIDEAHCISEWGHDFRPEYRRIKSIIAQIGEKLPIIALTATATPKVQQD 184
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG--AGSIIVYCM 236
I +L+++ + +SF+R NL+Y V+ +E ++I+K + G S I+YC+
Sbjct: 185 IQRNLQMEEADLFKSSFNRTNLYYEVR-----PKIKNETKKQIIKYIKGQKGKSGIIYCL 239
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K VEEI+ LK G+ A YH + R + F+ +E+ V+VAT+AFGMGIDKPD
Sbjct: 240 SRKKVEEIASLLKVNGINAAPYHAGLDQNVRIKNQDDFLNEELDVIVATIAFGMGIDKPD 299
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD-FYCGESQTENQRTA 355
VR+VIHY PK+LE YYQE+GR GRDG+ C ++Y + K D F + TE +
Sbjct: 300 VRYVIHYDVPKSLEGYYQETGRAGRDGLEGHCLMFYKYDDIIKLDKFNKDKPVTERENAK 359
Query: 356 IMESLLAAQRYCLLTTCRR 374
I+ +AA Y + CRR
Sbjct: 360 ILLQEMAA--YAESSICRR 376
>gi|389798157|ref|ZP_10201184.1| ATP-dependent DNA helicase RecQ [Rhodanobacter sp. 116-2]
gi|388445812|gb|EIM01870.1| ATP-dependent DNA helicase RecQ [Rhodanobacter sp. 116-2]
Length = 609
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 153/377 (40%), Positives = 226/377 (59%), Gaps = 17/377 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FR Q+ V++ + E D LV+M TG GKSLCYQ+P L+ T +VVSPLI+
Sbjct: 9 LQSVFGYPSFRGQQQAVVEHLGEGGDALVLMPTGGGKSLCYQIPALLRQGTGIVVSPLIA 68
Query: 65 LMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV +L++ G+ A +L S A+ V+ + G LL++ PE+ ++ F
Sbjct: 69 LMQDQVDALREAGVAAAYLNSSLGAEAQREVERQLLAGELNLLYVAPER--LLTSRFQGL 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L V LFA+DEAHC+S+WGHDFR EY++L L VP +ALTATA + R +I+
Sbjct: 127 LESIEVALFAIDEAHCVSQWGHDFRPEYRELAILHQRFPQVPRIALTATADPRTREEIVE 186
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L++ ++SFDR N+ Y V + + + + E +Q S IVYC++ + V
Sbjct: 187 RLSLQHARQFVSSFDRPNIGYRVGLRHNAKRQLGEFLQGHQGE-----SGIVYCLSRRKV 241
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
++ + L + GV+A YH + + R + + F+R++ VMVAT+AFGMGIDKPDVR V
Sbjct: 242 DDTAAWLAESGVEALPYHAGLDAATRAKNQQRFLREDGVVMVATVAFGMGIDKPDVRFVA 301
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI----M 357
H P+++E YYQE+GR GRDG+ + W+ Y S+ +S++ ++R + +
Sbjct: 302 HLDLPRSIEGYYQETGRAGRDGLPAEAWMIYGLSDVVTMSQMIAQSESADERKRVERQKL 361
Query: 358 ESLLAAQRYCLLTTCRR 374
ESLLA Y T CRR
Sbjct: 362 ESLLA---YAEATGCRR 375
>gi|238798601|ref|ZP_04642077.1| ATP-dependent DNA helicase recQ [Yersinia mollaretii ATCC 43969]
gi|238717557|gb|EEQ09397.1| ATP-dependent DNA helicase recQ [Yersinia mollaretii ATCC 43969]
Length = 610
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 155/376 (41%), Positives = 223/376 (59%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
V L+ FGY FRP Q+++I + +DCLVVM TG GKSLCYQ+P LVT LVVSP
Sbjct: 14 VQVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVTDGLTLVVSP 73
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L G+ A L S+QT +V +G +LL++ PE+ ++ SF
Sbjct: 74 LISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQIKLLYIAPER--LVMESF 131
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+L + L AVDEAHCIS+WGHDFR EY+ L +L+ +P +ALTATA E R D
Sbjct: 132 LDQLHQWRPALLAVDEAHCISQWGHDFRPEYRALGQLKQRFPNLPVIALTATADEATRGD 191
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L L P + ++SFDR N+ Y ++ + + +D+L + + +G I+YC +
Sbjct: 192 IVRLLNLDQPLIQVSSFDRPNIRY--TLVEKFKP-LDQLWRFVQDQRGKSG--IIYCNSR 246
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE+ + L+ G+ YH + ++ R + F RD+++V+VAT+AFGMGI+KP+VR
Sbjct: 247 AKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFGMGINKPNVR 306
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+H+ P+T+ESYYQE+GR GRDG+ + L Y ++ A E Q+
Sbjct: 307 FVVHFDIPRTIESYYQETGRAGRDGLPAEAVLLYDPADMAWLRRCLEEKPAGAQQDIERH 366
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 367 KLNAMGAFAEAQTCRR 382
>gi|440733531|ref|ZP_20913242.1| DNA helicase superfamily II protein [Xanthomonas translucens
DAR61454]
gi|440360758|gb|ELP98016.1| DNA helicase superfamily II protein [Xanthomonas translucens
DAR61454]
Length = 602
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 161/383 (42%), Positives = 227/383 (59%), Gaps = 25/383 (6%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
S L + FGY FR Q+D+++ + +D LV+M TG GKSLCYQ+P L+ T LV+SPL
Sbjct: 7 SVLNRVFGYDQFRGPQQDIVEHVAAGQDALVLMPTGGGKSLCYQIPSLLRDGTGLVISPL 66
Query: 63 ISLMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
I+LMQDQV +L+Q G+ AE+L S A+T V+ + G LL++ PE+ ++ F
Sbjct: 67 IALMQDQVEALRQLGVRAEYLNSTLDAETAQRVERELLAGELDLLYVAPER--LLTPRFL 124
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
S L ++ + LFA+DEAHC+S+WGHDFR EY+QL L +P +ALTATA + +I
Sbjct: 125 SLLERSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWPQIPRIALTATADPPTQREI 184
Query: 180 INSLKLKNPYVTIASFDRKNLFYGV-KVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
L L ++SFDR N+ Y V + N + +D L++ G+ I VYCM+
Sbjct: 185 AERLDLTQARHFVSSFDRPNIRYTVVQKENSKRQLLD-----FLRAHRGSAGI-VYCMSR 238
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
+ VEE ++ L + G+ A YH + ++ R R F+R++ VM AT+AFGMGIDKPDVR
Sbjct: 239 RKVEETAEFLAKEGLNALPYHAGLPAEVRAGNQRRFLREDGIVMCATIAFGMGIDKPDVR 298
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYA-------RSNFAKGDFYCGESQTEN 351
V H PK+LE YYQE+GR GRDG A+ WL Y + KG+ GE +
Sbjct: 299 FVAHTDLPKSLEGYYQETGRAGRDGEAAEAWLCYGLGDVVLLKQMIEKGE--AGEDRKRV 356
Query: 352 QRTAIMESLLAAQRYCLLTTCRR 374
+R ++ LL YC CRR
Sbjct: 357 ERRK-LDQLLG---YCESMQCRR 375
>gi|399927001|ref|ZP_10784359.1| ATP-dependent DNA helicase RecQ1 [Myroides injenensis M09-0166]
Length = 731
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 151/356 (42%), Positives = 228/356 (64%), Gaps = 15/356 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK++FG+S F+ Q+DV++ II + V+M TG GKSLCYQLP LV TA+VVSPLI+
Sbjct: 12 LKRFFGFSQFKGLQEDVVKSIISGHNTFVIMPTGGGKSLCYQLPALVLEGTAIVVSPLIA 71
Query: 65 LMQDQVMSLK----QRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPIS 117
LM++QV +++ + GI A L S+ T S + E +G +LL++ PE +
Sbjct: 72 LMKNQVDAIRSLSTEHGI-AHVLNSSLTKSEINQVKEDIKSGVTKLLYVAPE--SLTKEE 128
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
+ S L + + A+DEAHCISEWGHDFR EY+ L + L +P + LTATAT KV+
Sbjct: 129 YVSFLKEVKLSFVAIDEAHCISEWGHDFRPEYRNLRNIIRQLGDIPMIGLTATATPKVQE 188
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI+ +L++ + V ASF+R NLFY ++ + ++ ++++ I ++ +G ++YC++
Sbjct: 189 DILKNLEIPDANVFKASFNRPNLFYEIRP--KTKNIESDIIRFIKQNAGKSG--VIYCLS 244
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K VEEI+ L+ G+ A YH + +K R + +F+ +++ V+VAT+AFGMGIDKPDV
Sbjct: 245 RKKVEEIANVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGMGIDKPDV 304
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD-FYCGESQTENQ 352
R+VIH+ PK+LESYYQE+GR GRDG C YY+ + K + F G+ E +
Sbjct: 305 RYVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDIEKLEKFMAGKPIAEQE 360
>gi|429102817|ref|ZP_19164791.1| ATP-dependent DNA helicase RecQ [Cronobacter turicensis 564]
gi|426289466|emb|CCJ90904.1| ATP-dependent DNA helicase RecQ [Cronobacter turicensis 564]
Length = 609
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 146/337 (43%), Positives = 210/337 (62%), Gaps = 10/337 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q +I ++E RDCLVVM TG GKSLCYQ+P LV +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKTGLTIVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S Q+ +V TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLLANGVAAACLNSTQSRDEQQAVMAGCRTGEVRLLYIAPER--LMMDNFIDT 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +LR VPF+ALTATA + R DI+
Sbjct: 135 LGYWDLAMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVPFIALTATADDTTRRDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLDDPLIEISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346
>gi|284040794|ref|YP_003390724.1| ATP-dependent DNA helicase RecQ [Spirosoma linguale DSM 74]
gi|283820087|gb|ADB41925.1| ATP-dependent DNA helicase RecQ [Spirosoma linguale DSM 74]
Length = 736
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 157/375 (41%), Positives = 231/375 (61%), Gaps = 15/375 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK+ FGYS FR Q+ +I I+ R+ V+M TG+GKSLCYQLP +V+ TA+V+SPLI+
Sbjct: 16 LKEIFGYSQFRGEQEAIIYSILAGRNTFVIMPTGAGKSLCYQLPAIVSEGTAVVISPLIA 75
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSV-QTKAET--GYFQLLFMTPEKACIIPISFWSK 121
LM++QV L GINA+FL S + + + + K +T G +LL++ PE +
Sbjct: 76 LMKNQVDQLNAFGINAQFLNSTLSKAEMNKVKKDTLNGTLKLLYIAPE--SLTKEENLDF 133
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L KA + A+DEAHCISEWGHDFR EY+++ + + +P +ALTATAT KV+ DI
Sbjct: 134 LKKANISFVAIDEAHCISEWGHDFRPEYRKIRGIVDNIGNLPVIALTATATPKVQQDIQK 193
Query: 182 SLKLKNPYVTIASFDRKNLFYGV--KVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+L++++ + SF+RKNL+Y + KV + Q L++ I ++ +G I+YC++ K
Sbjct: 194 NLQMEDANLYKTSFNRKNLYYEIRPKVDAKKQ-----LIKYIKQNKGKSG--IIYCLSRK 246
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
VEEI++ L+ VKA YH + R F+ +++ V+ AT+AFGMGIDKPDVR
Sbjct: 247 TVEEIAELLRVNDVKALPYHAGLDPVTRMNNQDAFLNEDVDVICATIAFGMGIDKPDVRF 306
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIHY PK+LE YYQE+GR GRDG+ C ++Y+ + K + + + + +R
Sbjct: 307 VIHYDAPKSLEGYYQETGRAGRDGLEGNCLMFYSFDDIVKLEKF-NKDKPVTERDNAKHL 365
Query: 360 LLAAQRYCLLTTCRR 374
L Y L CRR
Sbjct: 366 LTEMVSYANLGVCRR 380
>gi|238760167|ref|ZP_04621314.1| ATP-dependent DNA helicase recQ [Yersinia aldovae ATCC 35236]
gi|238701603|gb|EEP94173.1| ATP-dependent DNA helicase recQ [Yersinia aldovae ATCC 35236]
Length = 605
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 156/376 (41%), Positives = 223/376 (59%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
V L+ FGY FRP Q+++I + +DCLVVM TG GKSLCYQ+P LVT LVVSP
Sbjct: 9 VQVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVTDGLTLVVSP 68
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L G+ A L S+QT +V +G +LL++ PE+ ++ SF
Sbjct: 69 LISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQIKLLYIAPER--LVMESF 126
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+L + L AVDEAHCIS+WGHDFR EY+ L +L+ +P +ALTATA E R D
Sbjct: 127 LDQLHQWRPALLAVDEAHCISQWGHDFRPEYRALGQLKQRFPDLPVIALTATADEATRGD 186
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L L P V ++SFDR N+ Y ++ + + +D+L + + +G I+YC +
Sbjct: 187 ILRLLNLSQPLVQVSSFDRPNIRY--TLVEKFKP-LDQLWRFVQDQRGKSG--IIYCNSR 241
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE+ + L+ G+ YH + ++ R + F RD+++V+VAT+AFGMGI+KP+VR
Sbjct: 242 AKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFGMGINKPNVR 301
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+H+ P+T+ESYYQE+GR GRDG+ + L Y ++ A E Q+
Sbjct: 302 FVVHFDIPRTIESYYQETGRAGRDGLPAEAVLLYDPADMAWLRRCLEEKPAGAQQDIERH 361
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 362 KLNAMGAFAEAQTCRR 377
>gi|421497331|ref|ZP_15944503.1| ATP-dependent DNA helicase RecQ [Aeromonas media WS]
gi|407183677|gb|EKE57562.1| ATP-dependent DNA helicase RecQ [Aeromonas media WS]
Length = 607
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 151/376 (40%), Positives = 225/376 (59%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
++ L+ FGY FRP Q ++I++I+ RD LV+ TG GKSLCYQ+P L+ +VVSP
Sbjct: 13 LALLQAVFGYQQFRPGQLEIIEQIVAGRDALVLKPTGGGKSLCYQIPALLRPGLGVVVSP 72
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT-DSSVQTKA--ETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV SL+ G+ A ++ SA + + VQ A G +L++++PE+ ++ F
Sbjct: 73 LISLMKDQVDSLRANGVAAVYINSALSREEMVQNFAAMRRGEIKLVYVSPER--LLQHEF 130
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+L + + LFA+DEAHC+S+WGHDFR EY L +L+ + VP VALTATA E R D
Sbjct: 131 LDRLAELPLGLFAIDEAHCVSQWGHDFRPEYAALGRLKQWFPQVPVVALTATADEATRSD 190
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
+++ L+L +P++ ASFDR N+ Y + +G ++L++ + G IVYC +
Sbjct: 191 MLHRLELHDPFIHTASFDRPNIRYSLVEKFKG---AEQLLRYVQSQKGNCG--IVYCSSR 245
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VEE+++ L + G KA YH + R F++D++ ++VAT+AFGMGIDKP+VR
Sbjct: 246 NRVEEVAERLSRHGCKASPYHAGLPLDQRLRTQDAFLKDDVEIVVATVAFGMGIDKPNVR 305
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+HY PK +ESYYQE+GR GRDG + L Y ++ + + Q
Sbjct: 306 FVVHYDIPKNIESYYQETGRAGRDGTPAEALLLYDPADIGRVRRLLDNIENPQQLQVEQY 365
Query: 359 SLLAAQRYCLLTTCRR 374
L + TCRR
Sbjct: 366 KLNVMAAFAEAQTCRR 381
>gi|295133000|ref|YP_003583676.1| ATP-dependent DNA helicase RecQ [Zunongwangia profunda SM-A87]
gi|294981015|gb|ADF51480.1| ATP-dependent DNA helicase RecQ [Zunongwangia profunda SM-A87]
Length = 731
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 159/381 (41%), Positives = 233/381 (61%), Gaps = 22/381 (5%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LKKYFG+S F+ Q+DV+ I+ K D V+M TG GKSLCYQLP L+ TA+VVSPLI+
Sbjct: 12 LKKYFGFSQFKGLQEDVVASIVHKNDTFVIMPTGGGKSLCYQLPALIEEGTAIVVSPLIA 71
Query: 65 LMQDQVMSLKQRGINAEF-----LGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPI 116
LM++QV ++ RGI++E+ L S+ + V+ E G +LL++ PE +
Sbjct: 72 LMKNQVDAI--RGISSEYGVAHVLNSSLNKTEVKQVKEDIINGVTKLLYVAPE--SLTKE 127
Query: 117 SFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKL-RTFLLGVPFVALTATATEKV 175
+ L + + A+DEAHCISEWGHDFR EY+ L ++ + +P +ALTATAT KV
Sbjct: 128 DYVDFLKEQKISFLAIDEAHCISEWGHDFRPEYRNLRQIIKRIGENIPIIALTATATPKV 187
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYC 235
+ DI+ +L + ASF+R NL+Y V+ + VD + +K G II YC
Sbjct: 188 QEDILKNLGIPKAKTFKASFNRPNLYYEVRPKTKN---VDADIIRFVKQNNGKSGII-YC 243
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
++ K VEE+++ L+ G+ A YH + +K R + +F+ +E+ V+VAT+AFGMGIDKP
Sbjct: 244 LSRKKVEELAQTLQVNGINAIPYHAGLDAKTRSKHQDMFLMEEVDVVVATIAFGMGIDKP 303
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD-FYCGESQTENQ-R 353
DVR VIH+ PK++ESYYQE+GR GRDG C +YA + K + F G+ E +
Sbjct: 304 DVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYAYKDIEKLEKFMSGKPVAEQEVG 363
Query: 354 TAIMESLLAAQRYCLLTTCRR 374
A+++ ++A Y + RR
Sbjct: 364 HALLQEVVA---YAETSISRR 381
>gi|397162702|ref|ZP_10486172.1| ATP-dependent DNA helicase RecQ [Enterobacter radicincitans DSM
16656]
gi|396095746|gb|EJI93286.1| ATP-dependent DNA helicase RecQ [Enterobacter radicincitans DSM
16656]
Length = 608
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 146/339 (43%), Positives = 209/339 (61%), Gaps = 10/339 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
L++ FGY FRP Q+D+I ++ RDCLVVM TG GKSLCYQ+P LV +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQQDIIDTVLSGRDCLVVMPTGGGKSLCYQIPALVLQGLTVVVSPL 74
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLM+DQV L G+ A L S Q+ V G +LL++ PE+ ++ +F
Sbjct: 75 ISLMKDQVDQLLANGVAAACLNSTQSREQQFDVINGCRNGQIRLLYIAPER--LMLDNFL 132
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L + L AVDEAHCIS+WGHDFR EY L LR L VPF+ALTATA + R DI
Sbjct: 133 DQLRQWNPVLLAVDEAHCISQWGHDFRPEYAALGHLRQMLPSVPFMALTATADDTTRRDI 192
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
L L +P + ++SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 193 ERLLGLNDPLIQVSSFDRPNIRY---MLMEKFKPLDQLLRYVQEQRGKSG--IIYCNSRA 247
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
VE+ + L+ G A YH + ++ R F RD+++++VAT+AFGMGI+KP+VR
Sbjct: 248 KVEDTAARLQSRGFSAAAYHAGLDNELRARVQEQFQRDDLQIVVATVAFGMGINKPNVRF 307
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
V+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A
Sbjct: 308 VVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346
>gi|339445528|ref|YP_004711532.1| hypothetical protein EGYY_20410 [Eggerthella sp. YY7918]
gi|338905280|dbj|BAK45131.1| hypothetical protein EGYY_20410 [Eggerthella sp. YY7918]
Length = 674
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 159/386 (41%), Positives = 226/386 (58%), Gaps = 20/386 (5%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ L+++FGY FRP Q+ V+ I++ RD L VM TG+GKS+CYQ+P +V LVVSPL
Sbjct: 9 AALREHFGYEAFRPGQEGVVGAILDGRDALAVMPTGAGKSVCYQVPGIVLEGLTLVVSPL 68
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
+SLM DQV +L G+ +L S T ++V +A G +Q++++ PE+ + F
Sbjct: 69 VSLMGDQVRALLDAGVRGAYLNSTLTPGQQATVLRRALAGAYQIMYVAPER--LTDARFL 126
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVA-LTATATEKVRID 178
+ +A + L AVDEAHC+S+WG DFR Y + L P VA TATATE+VR D
Sbjct: 127 AFASEARIPLVAVDEAHCVSQWGQDFRPSYLTIGDFIAQLPMRPVVAAFTATATERVRRD 186
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L L++PY + FDR NL++GV+ + + + L+ +G IVYC T
Sbjct: 187 IVRLLALRDPYEAVTGFDRPNLYFGVERMEPKKKLA-WIASYALEHPGDSG--IVYCSTR 243
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
KD E++ AL GV+A YH M S AR E+ + FI D+ VMVAT AFGMGIDK +VR
Sbjct: 244 KDTEKVHDALVAAGVRATCYHAGMSSAARIESQQAFIADDAPVMVATNAFGMGIDKSNVR 303
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ------ 352
+V+H+ P +LE+YYQE+GR GRDG S C L ++ + + F+ E ++ N+
Sbjct: 304 YVVHHNMPGSLEAYYQEAGRAGRDGEPSTCMLLWSDGDVSTCRFFI-EQESGNEELTLEE 362
Query: 353 ----RTAIMESLLAAQRYCLLTTCRR 374
R + L A YC T C R
Sbjct: 363 AEAVRASRRRLLAAMTGYCNTTGCLR 388
>gi|224074554|ref|XP_002304389.1| predicted protein [Populus trichocarpa]
gi|222841821|gb|EEE79368.1| predicted protein [Populus trichocarpa]
Length = 718
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 161/381 (42%), Positives = 233/381 (61%), Gaps = 26/381 (6%)
Query: 9 FGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQD 68
FG +R QK++I I+ RD LV+MA G GKSLCYQLP ++ ALV+SPL+SL+QD
Sbjct: 89 FGIPSYRQNQKEIINAIMSGRDVLVIMAAGGGKSLCYQLPAILRDGVALVISPLLSLIQD 148
Query: 69 QVMSLKQRGINAEFLGSAQTDSSVQ------TKAETGYFQLLFMTPEKACIIPISFWSKL 122
QVM L GI A L S + + + K E G ++L++TPEK F SKL
Sbjct: 149 QVMGLTALGIPAFMLTSTTSKENEKFIYKALEKGE-GELKILYVTPEKISKSK-RFMSKL 206
Query: 123 LK---AG-VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
K AG + L ++DEAHC S+WGHDFR +YK L L+T VP VALTATAT+KV+ D
Sbjct: 207 EKCHNAGRLSLISIDEAHCCSQWGHDFRPDYKSLSILKTQFSNVPVVALTATATQKVQYD 266
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINR-GQSFVDELVQEILKSVAGAGSIIVYCMT 237
++ L++ +++ +R NLFY V+ + G+ VDE+ + I +S + + S IVYC +
Sbjct: 267 VMEMLRIPKCVKFVSTVNRPNLFYTVRSKSSVGKVVVDEIAEFIQESYSNSESGIVYCFS 326
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K+ E+++ L++ G+ A YH M ARE+ H + +++++V+V T+AFGMGI+KPDV
Sbjct: 327 RKECEQVAAELRERGIAADYYHADMDVNAREKVHTWWSKNKLQVIVGTVAFGMGINKPDV 386
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD---FYCGESQTENQRT 354
R VIH+ K++E+YYQESGR GRDG+ S C L+Y ++ + FY
Sbjct: 387 RFVIHHSLSKSMETYYQESGRAGRDGLPSECVLFYRPADVPRQSSMVFY---------EN 437
Query: 355 AIMESLLAAQRYCLLT-TCRR 374
+ +++L RYC CRR
Sbjct: 438 SGLQNLYDIVRYCQSKRQCRR 458
>gi|260596045|ref|YP_003208616.1| ATP-dependent DNA helicase RecQ [Cronobacter turicensis z3032]
gi|260215222|emb|CBA27089.1| ATP-dependent DNA helicase recQ [Cronobacter turicensis z3032]
Length = 635
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 146/337 (43%), Positives = 210/337 (62%), Gaps = 10/337 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q +I ++E RDCLVVM TG GKSLCYQ+P LV +VVSPLIS
Sbjct: 43 LQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKTGLTIVVSPLIS 102
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S Q+ +V TG +LL++ PE+ ++ +F
Sbjct: 103 LMKDQVDQLLANGVAAACLNSTQSRDEQHAVMAGCRTGEVRLLYIAPER--LMMDNFIDT 160
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +LR VPF+ALTATA + R DI+
Sbjct: 161 LGYWDLAMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVPFIALTATADDTTRRDIVR 220
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 221 LLGLDDPLIEISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 275
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 276 EDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 335
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A
Sbjct: 336 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 372
>gi|212556507|gb|ACJ28961.1| ATP-dependent DNA helicase RecQ [Shewanella piezotolerans WP3]
Length = 607
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 150/381 (39%), Positives = 226/381 (59%), Gaps = 19/381 (4%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ ++L+ FGY FR Q++VI++I +DCLV+M TG GKSLCYQLP L +VVS
Sbjct: 13 LSASLQSVFGYRTFRDGQREVIEQICAGQDCLVIMPTGGGKSLCYQLPALQLPGLTVVVS 72
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV SL Q G++A +L S+Q + + G +LL+++PE+ ++ S
Sbjct: 73 PLISLMKDQVDSLIQTGVSAAYLNSSQPREESLKILQQMRYGELKLLYVSPER--LLQAS 130
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
F +L + + LFA+DEAHCIS+WGHDFR EY L +LR VP +ALTATA R+
Sbjct: 131 FIDRLHELNISLFAIDEAHCISQWGHDFRPEYAALGRLRQQFPLVPIMALTATADNATRV 190
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGV----KVINRGQSFVDELVQEILKSVAGAGSIIV 233
DI L ++ P+ + SFDR N+ Y V N+ + F+D S IV
Sbjct: 191 DICERLTIE-PFSLLTSFDRPNIRYTVAEKLNAANQLRQFID---------AQNGNSGIV 240
Query: 234 YCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGID 293
YC + + V+E+++ L+ G +A YH + R + F++D++ ++VAT+AFGMGI+
Sbjct: 241 YCSSRRRVDEVAERLRMQGHQAEAYHAGKTQEERADVQDRFLKDQLDIVVATVAFGMGIN 300
Query: 294 KPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQR 353
K +VR+V+HY PK++E+YYQE+GR GRDG+ S + + ++ + +S+ Q+
Sbjct: 301 KSNVRYVVHYDIPKSVEAYYQETGRAGRDGLDSEALMLFDPADIGRVRHLIEQSEPGPQQ 360
Query: 354 TAIMESLLAAQRYCLLTTCRR 374
L + TCRR
Sbjct: 361 QVEFHKLNTMAAFAEAQTCRR 381
>gi|372271783|ref|ZP_09507831.1| ATP-dependent DNA helicase RecQ [Marinobacterium stanieri S30]
Length = 711
Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 156/375 (41%), Positives = 221/375 (58%), Gaps = 12/375 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L FG+ FRP Q +V++ +IE RD LVVM TG GKSLCYQLP LV +V+SPLI+
Sbjct: 9 LADVFGFESFRPPQDEVVKTLIEGRDALVVMPTGGGKSLCYQLPALVREGCGVVISPLIA 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQT---KAETGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV +L Q GI A L S+ T +Q + TG LL++ PE+ + +
Sbjct: 69 LMQDQVSALSQLGIRAGCLNSSMTLEDLQETEHQLRTGELDLLYVAPER--LQSPRTQNL 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + LFA+DEAHC+S+WGHDFR EY QL++L+ GVP +ALTATA + R +II+
Sbjct: 127 LSQCRLSLFAIDEAHCVSQWGHDFRPEYMQLNQLKQLFPGVPRIALTATADARTRQEIID 186
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L+L N I FDR N+ Y + +R + + ++E G +VYC++ K V
Sbjct: 187 RLELTNAQRFICGFDRPNIRYRIGQKDRAREQLLRFIREEHPQDVG----VVYCLSRKRV 242
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
EE ++ L + G A YH + + R+ F+ +E +MVAT+AFGMGIDKP+VR V
Sbjct: 243 EETAEWLCERGFNALPYHAGLDAGLRQHHQHRFLTEESVIMVATIAFGMGIDKPNVRFVA 302
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN--FAKGDFYCGESQTENQRTAIMES 359
H P+++E+YYQE+GR GRDG + W+ Y + F + G + Q+ +
Sbjct: 303 HLDLPRSIEAYYQETGRAGRDGQPANAWMVYGLQDVIFLR-QMLEGSGAEDAQKQIERQK 361
Query: 360 LLAAQRYCLLTTCRR 374
L A C +T+CRR
Sbjct: 362 LEAMLGLCEITSCRR 376
>gi|340382607|ref|XP_003389810.1| PREDICTED: Werner syndrome ATP-dependent helicase homolog, partial
[Amphimedon queenslandica]
Length = 864
Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 148/321 (46%), Positives = 195/321 (60%), Gaps = 14/321 (4%)
Query: 34 VMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQ 93
+ +TG GKSLCYQ P + +LV+SPLISLM+DQV L R I + FLGSAQ D +
Sbjct: 4 IFSTGYGKSLCYQYPAVYCNGLSLVISPLISLMEDQVTQLNVRNIPSCFLGSAQFDEAAA 63
Query: 94 TKA-ETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQL 152
K +G ++LF+TPE A F K G+ L A+DEAHC+S+WGHDFR Y++L
Sbjct: 64 KKNILSGNIRVLFITPEYADRSNKFFIEVCEKVGITLVAIDEAHCVSQWGHDFRDSYRRL 123
Query: 153 DKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQS 212
+R + VP +ALTATAT VR DII+SL+L NP + SFDR NL+ IN
Sbjct: 124 GNIRHHIPNVPLLALTATATPAVRKDIISSLRLTNPLMVTTSFDRPNLYIE---INPKSG 180
Query: 213 FVDELVQEILKSVAGA----------GSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQM 262
E + +L + G IVYC EEI+ LK +GV GTYH +
Sbjct: 181 LPSEDFKPLLLATKDPATNRTVHSFEGPTIVYCRKKAVTEEITSVLKSMGVSCGTYHADI 240
Query: 263 GSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRD 322
K R+E H F+RDE++ +VAT+AFGMGIDKPDVR ++HY P+ +E YYQE GR GRD
Sbjct: 241 PLKERKEVHHKFLRDELQCVVATIAFGMGIDKPDVRLIVHYSAPQDIECYYQEIGRAGRD 300
Query: 323 GIASVCWLYYARSNFAKGDFY 343
G S C+++Y+ S+F F+
Sbjct: 301 GSPSKCYMFYSDSDFNLNRFF 321
>gi|241664540|ref|YP_002982900.1| ATP-dependent DNA helicase RecQ [Ralstonia pickettii 12D]
gi|240866567|gb|ACS64228.1| ATP-dependent DNA helicase RecQ [Ralstonia pickettii 12D]
Length = 636
Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 160/385 (41%), Positives = 224/385 (58%), Gaps = 20/385 (5%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGK----TALV 58
+ L FGYS FR Q +++ + + DCLV+M TG GKSLCYQ+P LV + +V
Sbjct: 24 AVLHDVFGYSAFRGPQAEIVAHVADGGDCLVLMPTGGGKSLCYQIPALVRHRRGQGAGIV 83
Query: 59 VSPLISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIP 115
VSPLI+LMQDQV +L++ G+ A +L SA T + V+ G L+++ PE+ ++
Sbjct: 84 VSPLIALMQDQVAALEEAGVRAAYLNSALTGAEAAQVERDLAAGRLDLVYVAPER--LMT 141
Query: 116 ISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
F L ++ + LFA+DEAHC+S+WGHDFR EY QL L VP +ALTATA
Sbjct: 142 PRFLELLERSRIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPHVPRIALTATADAVT 201
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGV--KVINRGQSFVDELVQEILKSVAGAGSIIV 233
R +I+ L L + V ++SFDR N+ Y + K R Q + + AG IV
Sbjct: 202 RDEIVERLALTDARVFLSSFDRPNIRYTIVEKDSARQQLLRFIRAEHMDGDTCDAG--IV 259
Query: 234 YCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGID 293
YC++ K VEE ++ L + G++A YH M S+ R +F ++E VMVAT+AFGMGID
Sbjct: 260 YCLSRKKVEETAQWLAEQGIRALPYHAGMDSQVRARHQAIFRKEEGVVMVATIAFGMGID 319
Query: 294 KPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQR 353
KPDVR V H PK+LE YYQE+GR GRDG+ + W+ Y ++ + ES ++
Sbjct: 320 KPDVRFVAHLDLPKSLEGYYQETGRAGRDGLPANAWMAYGLADVVQQRRMIDESDADDVH 379
Query: 354 ----TAIMESLLAAQRYCLLTTCRR 374
TA +E+LL C TCRR
Sbjct: 380 KRVSTAKLEALLG---LCEAATCRR 401
>gi|379729697|ref|YP_005321893.1| ATP-dependent DNA helicase RecQ [Saprospira grandis str. Lewin]
gi|378575308|gb|AFC24309.1| ATP-dependent DNA helicase RecQ [Saprospira grandis str. Lewin]
Length = 737
Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 156/383 (40%), Positives = 235/383 (61%), Gaps = 15/383 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ + LKKYFG+ F+ Q+++IQ I+ +D V+M TG GKSLCYQLP L++ TA+VVS
Sbjct: 8 LTTALKKYFGFEQFKGQQEEIIQSILSGQDTFVIMPTGGGKSLCYQLPALLSEGTAIVVS 67
Query: 61 PLISLMQDQVMSLKQRGIN---AEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACI- 113
PLI+LM++QV +++ + A FL S+ + + V+ + +G +LL++ PE
Sbjct: 68 PLIALMKNQVDAVRSYAESDQVAHFLNSSLSRAKVKEVKQDIVSGATKLLYIAPETLTKE 127
Query: 114 IPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKL-RTFLLGVPFVALTATAT 172
+ F S++ V AVDEAHCISEWGHDFR EY+++ + +P +ALTATAT
Sbjct: 128 DTLRFLSQI---KVSFVAVDEAHCISEWGHDFRPEYRRIRSMIENIEQEIPIIALTATAT 184
Query: 173 EKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSII 232
KVR+DI+ +L+L+ P + SF+R NLFY V+ + + + +VQ +K A S I
Sbjct: 185 PKVRMDIVKTLRLEEPREFMDSFNRDNLFYEVQPKGKKEDVLRRIVQ-FIKDKAPNESGI 243
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
+Y K EE++K L +KA YH + +K R + F+ +++ V+VAT+AFGMGI
Sbjct: 244 IYVQNRKTTEEVAKVLSVNDIKAAPYHAGLEAKLRSDTQDAFLMEKVDVIVATIAFGMGI 303
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD-FYCGESQTEN 351
DKPDVR VIHY PK++E+YYQE+GR GRDG + C +Y+ + + + F + E
Sbjct: 304 DKPDVRFVIHYDIPKSIENYYQETGRAGRDGQHAHCLTFYSYKDILRLEKFLRDKPVAER 363
Query: 352 QRTAIMESLLAAQRYCLLTTCRR 374
+ A + + + A Y T CRR
Sbjct: 364 EMGAQLLAEMIA--YAETTACRR 384
>gi|417792738|ref|ZP_12440060.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii E899]
gi|429117792|ref|ZP_19178710.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii 701]
gi|449309964|ref|YP_007442320.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii SP291]
gi|333953169|gb|EGL71149.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii E899]
gi|426320921|emb|CCK04823.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii 701]
gi|449099997|gb|AGE88031.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii SP291]
Length = 609
Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 146/337 (43%), Positives = 210/337 (62%), Gaps = 10/337 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q +I ++E RDCLVVM TG GKSLCYQ+P LV +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKTGLTIVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S Q+ +V TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLLANGVAAACLNSTQSREEQQAVMAGCRTGQVRLLYIAPER--LMMDNFIDT 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +LR VPF+ALTATA + R DI+
Sbjct: 135 LGYWDLAMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVPFMALTATADDTTRRDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLDDPLIEISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346
>gi|359787299|ref|ZP_09290357.1| ATP-dependent DNA helicase RecQ [Halomonas sp. GFAJ-1]
gi|359295428|gb|EHK59697.1| ATP-dependent DNA helicase RecQ [Halomonas sp. GFAJ-1]
Length = 608
Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 150/377 (39%), Positives = 220/377 (58%), Gaps = 9/377 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L++ FGY FR Q+ +I+ +I D LV+M TG GKSLCYQ+P L+ TA+VVSP
Sbjct: 10 LKVLQEVFGYDSFRGPQQAIIEHVIAGGDALVLMPTGGGKSLCYQIPALLREGTAIVVSP 69
Query: 62 LISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LI+LMQDQV +L+Q G+ A +L S+ V+ + G LL++ PE+ + +
Sbjct: 70 LIALMQDQVAALEQNGVRAAYLNSSLDYHEAVDVENRLRAGELDLLYVAPERLAMPRMQM 129
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
L + + LFA+DEAHC+S+WGHDFR EY+QL L VP +ALTATA R D
Sbjct: 130 L--LEQTQIALFAIDEAHCVSQWGHDFRPEYRQLSHLHQRFPQVPRIALTATADVPTRGD 187
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L+L+N + + FDR N+ Y I Q E + ++ + IVYC++
Sbjct: 188 IMEHLQLQNAALYNSGFDRPNIRYH---IAENQGNAKEQLLRFIREHHNGEAGIVYCLSR 244
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
+ VEE + L++ G+ A YH + ++ R+ F+R++ V+VAT+AFGMGIDKPDVR
Sbjct: 245 RKVEETAAWLERQGLTALPYHAGLPAEQRQHHQTRFLREDGVVIVATIAFGMGIDKPDVR 304
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN-FAKGDFYCGESQTENQRTAIM 357
V H PK++E+YYQE+GR GRDG+ + W+ Y + G S + Q+
Sbjct: 305 FVAHLNLPKSIEAYYQETGRAGRDGLPADAWMAYGLQDVITLRQMQQGSSAADQQKRIEQ 364
Query: 358 ESLLAAQRYCLLTTCRR 374
+ L A C + +CRR
Sbjct: 365 QKLDAMLGLCEIISCRR 381
>gi|429107085|ref|ZP_19168954.1| ATP-dependent DNA helicase RecQ [Cronobacter malonaticus 681]
gi|426293808|emb|CCJ95067.1| ATP-dependent DNA helicase RecQ [Cronobacter malonaticus 681]
Length = 609
Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 146/337 (43%), Positives = 210/337 (62%), Gaps = 10/337 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q +I ++E RDCLVVM TG GKSLCYQ+P LV +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKTGLTIVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S Q+ +V TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLLANGVAAACLNSTQSRDEQQAVMAGCRTGQVRLLYIAPER--LMMDNFIDT 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +LR VPF+ALTATA + R DI+
Sbjct: 135 LGYWDLAMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVPFMALTATADDTTRRDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLDDPLIEISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346
>gi|261854926|ref|YP_003262209.1| ATP-dependent DNA helicase RecQ [Halothiobacillus neapolitanus c2]
gi|261835395|gb|ACX95162.1| ATP-dependent DNA helicase RecQ [Halothiobacillus neapolitanus c2]
Length = 609
Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 150/332 (45%), Positives = 204/332 (61%), Gaps = 7/332 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L FGY FR Q +VI ++ RD LV+M TG GKSLCYQ+P L TA+VVSPLI+
Sbjct: 13 LNTVFGYPAFRGPQAEVIDTVMSGRDALVLMPTGGGKSLCYQVPALALSGTAIVVSPLIA 72
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQ---TKAETGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV +L+Q G+ A FL S QT Q + G LL++ PE+ ++ S
Sbjct: 73 LMQDQVAALRQAGVAAAFLNSTQTGEEAQLVRKQLRAGTLDLLYVAPER--LLNADTLSL 130
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L A + L A+DEAHC+S+WGHDFR EY +L +L + +P +ALTATA + +I+
Sbjct: 131 LRDASINLIAIDEAHCVSQWGHDFRPEYIRLGELGQYFPDIPRIALTATADGTTQQEILY 190
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L N V I+SFDR N+ Y + N S D L++ I + A I VYC++ K V
Sbjct: 191 RLGLNNARVFISSFDRPNIRYHI-AQNHAGSARDALLRFIRDNHANEAGI-VYCLSRKRV 248
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
EEI+ L G+ A YH + + RE+ R F+ ++ ++VAT+AFGMGIDKPDVR V
Sbjct: 249 EEIAAWLSDQGLTALAYHAGLPATQREQTLRRFLDEDGVIVVATIAFGMGIDKPDVRFVA 308
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYA 333
H PK++E+YYQE+GR GRDG+ + W+ Y
Sbjct: 309 HLNLPKSIEAYYQETGRAGRDGLPAEAWMRYG 340
>gi|429218110|ref|YP_007179754.1| ATP-dependent DNA helicase RecQ [Deinococcus peraridilitoris DSM
19664]
gi|429128973|gb|AFZ65988.1| ATP-dependent DNA helicase RecQ [Deinococcus peraridilitoris DSM
19664]
Length = 726
Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 151/338 (44%), Positives = 206/338 (60%), Gaps = 9/338 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
V LK FGY FR Q D+++ + D LV+M TG GKSLCYQ+P L+ G TA+VVSP
Sbjct: 10 VQVLKTVFGYDAFRGPQADIVRHVAAGADALVLMPTGGGKSLCYQVPALLRGATAIVVSP 69
Query: 62 LISLMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LI+LM+DQV +L+Q G+ A +L S A V+ G QLL++ PE+ ++ F
Sbjct: 70 LIALMKDQVDALRQLGVRAAYLNSSLGAYEAREVEEALRHGELQLLYVAPER--LMTPRF 127
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
L ++ V LFA+DEAHC+S+WGHDFR EY QL L VP +ALTATA E R +
Sbjct: 128 LDLLDRSEVSLFAIDEAHCVSQWGHDFRPEYLQLAVLAERYPHVPRLALTATADEATRRE 187
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L L+ I+SFDR N+ Y +++ + + L E +++ + IVYC++
Sbjct: 188 IVEKLHLQGARQFISSFDRPNIHY--RIVEKNNALRQLL--EFIRAEHDGDAGIVYCLSR 243
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K VEE + L GV A YH +G + R F+R+E VMVAT+AFGMGIDKP+VR
Sbjct: 244 KSVEESAAWLAAQGVSALPYHAGLGPEVRARHQERFLREEGLVMVATVAFGMGIDKPNVR 303
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN 336
V H PK+LE YYQE+GR GRDG+ S + Y ++
Sbjct: 304 FVAHLDLPKSLEGYYQETGRAGRDGLPSTVLMTYGLAD 341
>gi|139438705|ref|ZP_01772189.1| Hypothetical protein COLAER_01191 [Collinsella aerofaciens ATCC
25986]
gi|133775785|gb|EBA39605.1| putative ATP-dependent DNA helicase RecQ [Collinsella aerofaciens
ATCC 25986]
Length = 659
Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 163/398 (40%), Positives = 236/398 (59%), Gaps = 31/398 (7%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ TL YFGY+ FRP Q ++ I+ RD L VM TG+GKS+CYQ+P L+ VVSP
Sbjct: 10 LDTLGAYFGYTSFRPGQDRMVDAILAGRDALGVMPTGAGKSICYQVPALMLPGITFVVSP 69
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDSSVQT---KAETGYFQLLFMTPEKACIIPISF 118
L+SLM+DQ +L G +L S+ T + T +A G +QL+++ PE+ ++ F
Sbjct: 70 LLSLMEDQTRALLAAGARPSYLNSSLTPAQQNTVLKRAREGRYQLMYVAPER--LLEPRF 127
Query: 119 WSKLLKA------GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVA-LTATA 171
+ +A GV L A+DEAHC+S+WG DFR Y Q+ + L P VA TATA
Sbjct: 128 LAFAQEAAGSAGIGVPLVAIDEAHCVSQWGQDFRPAYLQIREFIDSLPQRPIVAAFTATA 187
Query: 172 TEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSI 231
TE+VR DI L L+NP + FDRKNL++G + + G V++ + + + + S
Sbjct: 188 TERVRADIQQMLGLQNPATVVTGFDRKNLYFGCEEM--GDKAKTAWVRDYVIAHS-SESG 244
Query: 232 IVYCMTIKDVE----EISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMA 287
IVYC T K V+ E+++AL G++ G YH MG+ AR ++ R FI D+I+VMVAT A
Sbjct: 245 IVYCSTRKTVDALAGELAEALGPSGIRVGRYHAGMGNDARRQSQRAFIDDDIQVMVATNA 304
Query: 288 FGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNF-------AKG 340
FGMGIDKP+VR+VIH P+++E+YYQE+GR GRDG + C+L + ++F +G
Sbjct: 305 FGMGIDKPNVRYVIHNNVPESIEAYYQEAGRAGRDGDPASCYLLWNGNDFRMRRFLIDRG 364
Query: 341 DFYCGESQTENQRTAIMES----LLAAQRYCLLTTCRR 374
D E+ + QR +++ L + YC T C R
Sbjct: 365 D-AADEALDDEQRAWALQNRYRLLSQMEGYCNTTGCLR 401
>gi|269103722|ref|ZP_06156419.1| ATP-dependent DNA helicase RecQ [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268163620|gb|EEZ42116.1| ATP-dependent DNA helicase RecQ [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 613
Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 159/380 (41%), Positives = 228/380 (60%), Gaps = 20/380 (5%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ L+ FGY FR Q+D+I + + D LV+M TG GKSLCYQ+P L+ LV+SPL
Sbjct: 17 TLLEDVFGYQQFRDGQQDIITTALNRSDSLVIMPTGGGKSLCYQIPALLLDGLTLVISPL 76
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQT---KAETGYFQLLFMTPEKACIIPISFW 119
ISLM+DQV L GI A + SA T ++T + E+G +LL+++PE+ ++ F
Sbjct: 77 ISLMKDQVDQLVANGIQAACIHSALTRDEIETVFSQLESGELKLLYVSPER--VLMRDFI 134
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
++L + + L AVDEAHCIS+WGHDFR EY +L +L+ +P +ALTATA E R DI
Sbjct: 135 ARLQQVKLALLAVDEAHCISQWGHDFRPEYAELGQLKQMFAPLPVMALTATADETTRQDI 194
Query: 180 INSLKLKNPYVTIASFDRKNLFYGV----KVINRGQSFVDELVQEILKSVAGAGSIIVYC 235
I+ L L+ P++ + SFDR N+ Y + K +++ S+ L SV G II YC
Sbjct: 195 ISRLALEQPHIHLGSFDRPNIRYTLLEKYKPLSQLLSY--------LASVRGQCGII-YC 245
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
+ K VE+I + L + G++A YH M R F RD+I ++VAT+AFGMGI+KP
Sbjct: 246 NSRKRVEQICEKLCENGLRAAAYHAGMSVNDRAYVQEAFQRDDIHIVVATVAFGMGINKP 305
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTA 355
+VR VIH+ P+ +ESYYQE+GR GRDG+ + L Y ++ A C + + +
Sbjct: 306 NVRFVIHHDIPRNIESYYQETGRAGRDGLPAEAVLLYDPADMAWLR-RCLDEKPDGATRE 364
Query: 356 IMESLLAAQR-YCLLTTCRR 374
+ E L A R + TCRR
Sbjct: 365 VEEHKLNAMRDFAEAQTCRR 384
>gi|397663426|ref|YP_006504964.1| ATP-dependent DNA helicase [Legionella pneumophila subsp.
pneumophila]
gi|395126837|emb|CCD05020.1| ATP-dependent DNA helicase [Legionella pneumophila subsp.
pneumophila]
Length = 608
Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 154/376 (40%), Positives = 222/376 (59%), Gaps = 11/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
++ LKKYFG+ FRP Q+ +I+ +I D LV+M TG GKSLCYQ+P +V +VVSP
Sbjct: 15 LAVLKKYFGFDSFRPPQEKIIEDVISGEDVLVLMPTGGGKSLCYQIPAIVRPGVGIVVSP 74
Query: 62 LISLMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LI+LM+DQV +LK +GI A + S A+ +V + LL++ PE+ +I SF
Sbjct: 75 LIALMEDQVTALKLQGIRAAYYNSSLTAEEARNVLNQLHHNELDLLYIAPER--LISTSF 132
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+L + + LFA+DEAHCIS+WGHDFR EY L L+T +P +ALTATA ++ R D
Sbjct: 133 LDRLSECTISLFAIDEAHCISQWGHDFRPEYACLGLLKTNFPDIPMIALTATADKQTRED 192
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L + P + SF+R N+ Y KV+ + + V +L + +G I+YC T
Sbjct: 193 IVTKLNYQ-PKKYVVSFNRPNIHY--KVVPKTNA-VKQLNLFLQSDTQQSG--IIYCGTR 246
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE ++ L++LG KA YH + R E LF D I ++VAT+AFGMGIDKP+VR
Sbjct: 247 HTVEHLTAKLQELGFKARAYHAGLPHAERREVQNLFRYDRIDIVVATIAFGMGIDKPNVR 306
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+H+ PK++E YYQE+GR GRDG+ + L Y ++ A+ + + QR
Sbjct: 307 FVVHHDLPKSIEGYYQETGRAGRDGLPAKALLLYDAADSARLRSWIMNIPLDEQRHIETN 366
Query: 359 SLLAAQRYCLLTTCRR 374
L + + CRR
Sbjct: 367 KLNHMLAFAEASHCRR 382
>gi|429089133|ref|ZP_19151865.1| ATP-dependent DNA helicase RecQ [Cronobacter universalis NCTC 9529]
gi|426508936|emb|CCK16977.1| ATP-dependent DNA helicase RecQ [Cronobacter universalis NCTC 9529]
Length = 609
Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 146/337 (43%), Positives = 210/337 (62%), Gaps = 10/337 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q +I ++E RDCLVVM TG GKSLCYQ+P LV +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKTGLTIVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S Q+ +V TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLLANGVAAACLNSTQSRDEQQAVLAGCRTGEVRLLYIAPER--LMMDNFIDT 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +LR VPF+ALTATA + R DI+
Sbjct: 135 LGYWDLAMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVPFIALTATADDTTRRDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLDDPLIEISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346
>gi|393763185|ref|ZP_10351808.1| ATP-dependent DNA helicase RecQ [Alishewanella agri BL06]
gi|392606102|gb|EIW88990.1| ATP-dependent DNA helicase RecQ [Alishewanella agri BL06]
Length = 606
Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 143/377 (37%), Positives = 229/377 (60%), Gaps = 10/377 (2%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+++ LK+ FGYS +R Q ++I + RDC V++ TG GKSLCYQLP L K +VVS
Sbjct: 5 LLTALKQIFGYSSWRDGQAEIIAAALAGRDCFVLLPTGGGKSLCYQLPALQLPKVTVVVS 64
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQ---TKAETGYFQLLFMTPEKACIIPIS 117
PL+SLM+DQV +L+ GI A ++ S+ + +V + +LL++ PE+ ++
Sbjct: 65 PLMSLMKDQVDTLQANGIAAAYVNSSLSREAVLEVLNQLRYDELKLLYVAPER--LLQPQ 122
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
F +L + GV LFA+DEAHC+S+WGHDFR +Y L +LR GVP +ALTATA +
Sbjct: 123 FIERLQEVGVSLFAIDEAHCVSQWGHDFRPDYMALAQLRQHFPGVPVMALTATADPATQQ 182
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI+ L L+ P++ SFDR N+ Y V+ R +++L+ + + +G I+YC +
Sbjct: 183 DIVQQLALQQPFIHRGSFDRPNIRYTVQEKFRP---LEQLLAYLKQQENHSG--IIYCSS 237
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
+ V+E++ L++ G KA YH + R++ F RD++ ++VAT+AFGMG+DKP++
Sbjct: 238 RRKVDELTAQLQEKGFKAAAYHAGHDATHRQQVQDAFKRDDLALIVATVAFGMGVDKPNI 297
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R V+H+ P+T+E+YYQE+GR GRDG+A+ L + ++ + + + +
Sbjct: 298 RFVVHFELPRTIEAYYQETGRAGRDGVAAEALLLFDPADIGRMKRWLQTEENNLRAEVTW 357
Query: 358 ESLLAAQRYCLLTTCRR 374
+ L+ + TCRR
Sbjct: 358 QRFLSMAAFAEAQTCRR 374
>gi|374598547|ref|ZP_09671549.1| ATP-dependent DNA helicase, RecQ family [Myroides odoratus DSM
2801]
gi|423323213|ref|ZP_17301055.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CIP 103059]
gi|373910017|gb|EHQ41866.1| ATP-dependent DNA helicase, RecQ family [Myroides odoratus DSM
2801]
gi|404609764|gb|EKB09128.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CIP 103059]
Length = 731
Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 156/379 (41%), Positives = 238/379 (62%), Gaps = 19/379 (5%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK++FG+S F+ Q+DV++ II + V+M TG GKSLCYQLP LV TA+VVSPLI+
Sbjct: 12 LKRFFGFSQFKGLQEDVVKSIISGHNTFVIMPTGGGKSLCYQLPALVLDGTAIVVSPLIA 71
Query: 65 LMQDQVMSLK----QRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIPIS 117
LM++QV +++ ++GI A L S+ T + V E G +LL++ PE +
Sbjct: 72 LMKNQVDAIRSLSTEQGI-AHVLNSSLTKTEVNQVKEDIKQGITKLLYVAPE--SLTKEE 128
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
+ + L + + A+DEAHCISEWGHDFR EY+ L + L +P + LTATAT KV+
Sbjct: 129 YVNFLQEVKLSFVAIDEAHCISEWGHDFRPEYRNLRNIIRQLGDIPIIGLTATATPKVQE 188
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI+ +L++ N V ASF+R NL+Y +K + ++ ++++ I + +G ++YC++
Sbjct: 189 DILKNLEIPNANVFKASFNRPNLYYEIK--PKTKNIESDIIRFIKQRKGKSG--VIYCLS 244
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K VEEI+ L+ G+ A YH + +K R + +F+ +++ V+VAT+AFGMGIDKPDV
Sbjct: 245 RKKVEEIANVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGMGIDKPDV 304
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD-FYCGESQTENQ-RTA 355
R+VIH+ PK+LESYYQE+GR GRDG C YY+ + K + F G+ E + A
Sbjct: 305 RYVIHHDIPKSLESYYQETGRAGRDGGEGWCLAYYSYKDIEKLEKFMAGKPIAEQEIGIA 364
Query: 356 IMESLLAAQRYCLLTTCRR 374
+++ ++A Y + RR
Sbjct: 365 LLQEVVA---YAETSMSRR 380
>gi|423465493|ref|ZP_17442261.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG6O-1]
gi|402417308|gb|EJV49610.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG6O-1]
Length = 705
Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 151/372 (40%), Positives = 223/372 (59%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ ++E +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLEGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + F +
Sbjct: 69 LMKDQVDTLIQNGISATYINSSISMTEANHRIQLAKQGHYKLLYVAPER--LDSREFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
+L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 KTLEINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + V YH M R E LF+RDE+ VM+AT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLMKAEVSVSKYHAGMSDHDRNEQQELFLRDEVSVMIATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSECILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|170026209|ref|YP_001722714.1| ATP-dependent DNA helicase RecQ [Yersinia pseudotuberculosis YPIII]
gi|186893559|ref|YP_001870671.1| ATP-dependent DNA helicase RecQ [Yersinia pseudotuberculosis PB1/+]
gi|420570412|ref|ZP_15065845.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-05]
gi|420576075|ref|ZP_15070964.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-06]
gi|420634593|ref|ZP_15123519.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-19]
gi|420656190|ref|ZP_15143047.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-34]
gi|420677196|ref|ZP_15162026.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-46]
gi|420715828|ref|ZP_15195768.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-56]
gi|420748668|ref|ZP_15224634.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-64]
gi|420759919|ref|ZP_15234148.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-66]
gi|420770307|ref|ZP_15243422.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-72]
gi|420775288|ref|ZP_15247941.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-76]
gi|420786536|ref|ZP_15257793.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-89]
gi|420791561|ref|ZP_15262319.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-90]
gi|420807567|ref|ZP_15276750.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-93]
gi|169752743|gb|ACA70261.1| ATP-dependent DNA helicase RecQ [Yersinia pseudotuberculosis YPIII]
gi|186696585|gb|ACC87214.1| ATP-dependent DNA helicase RecQ [Yersinia pseudotuberculosis PB1/+]
gi|391437458|gb|EIQ98312.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-05]
gi|391441078|gb|EIR01593.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-06]
gi|391501167|gb|EIR55597.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-19]
gi|391518233|gb|EIR70963.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-34]
gi|391549862|gb|EIR99531.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-46]
gi|391581169|gb|EIS27080.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-56]
gi|391611365|gb|EIS53551.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-64]
gi|391626018|gb|EIS66438.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-66]
gi|391635100|gb|EIS74299.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-72]
gi|391645325|gb|EIS83215.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-76]
gi|391652808|gb|EIS89836.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-89]
gi|391658455|gb|EIS94858.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-90]
gi|391675277|gb|EIT09812.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-93]
Length = 597
Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 155/376 (41%), Positives = 223/376 (59%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L+ FGY FRP Q+++I + +DCLVVM TG GKSLCYQ+P LVT LVVSP
Sbjct: 1 MQVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVTDGLTLVVSP 60
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L G+ A L S+QT +V +G +LL++ PE+ ++ SF
Sbjct: 61 LISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQIKLLYIAPER--LVMESF 118
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+L + L AVDEAHCIS+WGHDFR EY+ L +L+ +P +ALTATA E R D
Sbjct: 119 LDQLYQWRPALLAVDEAHCISQWGHDFRPEYRALGQLKQRFPDLPVIALTATADEATRGD 178
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L L P + I+SFDR N+ Y ++ + + +D+L + + +G I+YC +
Sbjct: 179 IVRLLNLDQPLIQISSFDRPNIRY--TLVEKFKP-LDQLWRFVQDQRGKSG--IIYCNSR 233
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE+ + L+ G+ YH + ++ R + F RD+++V+VAT+AFGMGI+KP+VR
Sbjct: 234 AKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFGMGINKPNVR 293
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+H+ P+T+ESYYQE+GR GRDG+ + L Y ++ A E Q+
Sbjct: 294 FVVHFDIPRTIESYYQETGRAGRDGLPAEAVLLYDPADMAWLRRCLEEKPAGAQQDIERH 353
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 354 KLNAMGAFAEAQTCRR 369
>gi|225444694|ref|XP_002277754.1| PREDICTED: ATP-dependent DNA helicase Q-like 3-like [Vitis
vinifera]
Length = 730
Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 156/394 (39%), Positives = 237/394 (60%), Gaps = 26/394 (6%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+V L+ +FG++ FR Q + I+ I+ RDC +M TG GKS+CYQ+P L LVV
Sbjct: 24 LVKLLRWHFGHAEFRGRQLEAIEAILSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVC 83
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTD---SSVQTKAETG--YFQLLFMTPEKACIIP 115
PLI+LM++QVM+LK++GI AEFL S QT + ++G +LL++TPE I
Sbjct: 84 PLIALMENQVMALKEKGIAAEFLSSTQTTKVRDKIHEDLQSGKPSLRLLYVTPE--LIAT 141
Query: 116 ISFWSKLLKAG----VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATA 171
F S+L K + L A+DEAHCIS WGHDFR Y++L LR L VP +ALTATA
Sbjct: 142 PGFMSRLTKIHARGLLNLIAIDEAHCISSWGHDFRPSYRKLSSLRNHLPDVPILALTATA 201
Query: 172 TEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSI 231
KV+ D+I SL L+NP V +SF+R N++Y V R + +D++ ++ K + G++
Sbjct: 202 VPKVQKDVIESLCLQNPLVLKSSFNRPNIYYEV----RYKDLLDDVYADLSKLLKSCGNV 257
Query: 232 --IVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFG 289
IVYC+ +E+S L + G+ + YH + +K R +I +I+V+VAT+AFG
Sbjct: 258 CGIVYCLERTTCDELSAHLSKNGISSAAYHAGLNNKLRSSVLDDWISSKIQVVVATVAFG 317
Query: 290 MGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQT 349
MGID+ DVR V H+ PK++E++YQESGR GRD + S LYY + + +F +++
Sbjct: 318 MGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSRSLLYYGIDDRKRMEFILSNAES 377
Query: 350 ENQRTAIMESLLAAQ---------RYCLLTTCRR 374
+ +++ + ++ + YC ++CRR
Sbjct: 378 KKLQSSSSQDGMSKKSLADFSHMVEYCEGSSCRR 411
>gi|253580372|ref|ZP_04857638.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848465|gb|EES76429.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 629
Score = 284 bits (726), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 159/387 (41%), Positives = 227/387 (58%), Gaps = 23/387 (5%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
V TLK YFGY FR Q+ V++ I+E RD L +M TG+GKS+CYQ+P L+ +V+SP
Sbjct: 6 VQTLKTYFGYDTFREGQESVVESILEHRDVLAIMPTGAGKSICYQVPALMLSGITIVISP 65
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISF 118
LISLMQDQV +L + GI+A F+ S+ ++S + A G ++++++ PE+ + F
Sbjct: 66 LISLMQDQVKALNEAGIHAAFINSSLSESQISKALYLAAGGRYKIIYVAPER--LENYEF 123
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRI 177
+ + + VDEAHCIS+WG DFR Y ++ L G P V A TATATE+V+
Sbjct: 124 LEFARQVEISMVTVDEAHCISQWGQDFRPSYVKIVDFVKNLPGRPIVSAFTATATEEVKN 183
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI+ +LKL++P V I FDRKNL+Y V+ I R FV + + S I+YC T
Sbjct: 184 DILCTLKLEDPKVVITGFDRKNLYYSVENIRRKDDFVMDYIDR-----HPTESGIIYCST 238
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K+V+ + + L Q GV YH + ++ R++ FI D V++AT AFGMGIDK +V
Sbjct: 239 RKNVDNLFELLFQKGVAVTRYHAGLNNETRKKNQDDFIYDRTPVIIATNAFGMGIDKSNV 298
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYA-------RSNFAKGDFYCGESQTE 350
R+VIHY P+++E+YYQE+GR GRDG S C L ++ R DF + + E
Sbjct: 299 RYVIHYNMPQSMENYYQEAGRAGRDGENSQCVLLFSAQDVIIDRMLLDNKDFSDVDEEDE 358
Query: 351 ---NQRTAIMESLLAAQRYCLLTTCRR 374
QR + L + YC T C R
Sbjct: 359 FLIRQRD--IRRLQIMEGYCKTTGCLR 383
>gi|110833596|ref|YP_692455.1| ATP-dependent DNA helicase RecQ [Alcanivorax borkumensis SK2]
gi|110646707|emb|CAL16183.1| ATP-dependent DNA helicase RecQ [Alcanivorax borkumensis SK2]
Length = 713
Score = 284 bits (726), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 159/382 (41%), Positives = 223/382 (58%), Gaps = 22/382 (5%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
S L+ FGY FR Q+ VI +I+ D LV+M TG GKSLCYQ+P LV T +V+SPL
Sbjct: 7 SVLEHVFGYHQFRGEQQTVIDTLIQGDDALVLMPTGGGKSLCYQIPALVRTGTGVVISPL 66
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFW 119
I+LMQDQV +LK G+ A FL S ++++ G +L++ PE+ +I
Sbjct: 67 IALMQDQVDALKALGVRAAFLNSTLAHDQARALESALLQGELDMLYIAPER--LIQPRTL 124
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+ L +A + LFA+DEAHC+S+WGHDFR +Y QL L VP +ALTATA ++ R +I
Sbjct: 125 ALLKQAEIALFAIDEAHCVSQWGHDFRNDYLQLSLLHREFPDVPRIALTATADQRTRTEI 184
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
L L ++SFDR N+ Y I R ++L++ + AG I VYC++
Sbjct: 185 AERLDLTQARHFVSSFDRPNIQY---RIERKDGARNQLLRLLRAEHAGEAGI-VYCLSRN 240
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+ +++ L Q G+ A YH + RE+ + F+R++ VMVAT+AFGMGIDKPDVR
Sbjct: 241 KVDRVAEWLCQQGINALPYHAGLSGPMREKHQQRFLREDGIVMVATIAFGMGIDKPDVRF 300
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYA-------RSNFAKGDFYCGESQTENQ 352
V H PK++ESYYQE+GR GRDG + W+ Y + A+G + ENQ
Sbjct: 301 VAHLDLPKSIESYYQETGRAGRDGNPATAWMAYGLEDAIKLKQMLAQGSGNEQHKRNENQ 360
Query: 353 RTAIMESLLAAQRYCLLTTCRR 374
R +ES+L C +T CRR
Sbjct: 361 R---LESMLG---LCEITHCRR 376
>gi|229097332|ref|ZP_04228294.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock3-29]
gi|423442425|ref|ZP_17419331.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG4X2-1]
gi|423534838|ref|ZP_17511256.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuB2-9]
gi|228686143|gb|EEL40059.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock3-29]
gi|402414277|gb|EJV46610.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG4X2-1]
gi|402462569|gb|EJV94274.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuB2-9]
Length = 705
Score = 284 bits (726), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 151/372 (40%), Positives = 223/372 (59%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ ++E +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLEGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + F +
Sbjct: 69 LMKDQVDTLIQNGISATYINSSISMTEANHRIQLAKQGHYKLLYVAPER--LDSREFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
+L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 KTLEINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + V YH M R E LF+RDE+ VM+AT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLMKAEVSVSKYHAGMSDHDRNEQQELFLRDEVSVMIATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSECILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|309782826|ref|ZP_07677546.1| ATP-dependent DNA helicase RecQ [Ralstonia sp. 5_7_47FAA]
gi|404397522|ref|ZP_10989312.1| ATP-dependent DNA helicase RecQ [Ralstonia sp. 5_2_56FAA]
gi|308918250|gb|EFP63927.1| ATP-dependent DNA helicase RecQ [Ralstonia sp. 5_7_47FAA]
gi|348612707|gb|EGY62321.1| ATP-dependent DNA helicase RecQ [Ralstonia sp. 5_2_56FAA]
Length = 637
Score = 284 bits (726), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 160/385 (41%), Positives = 223/385 (57%), Gaps = 20/385 (5%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGK----TALV 58
+ L FGYS FR Q +++ + + DCLV+M TG GKSLCYQ+P LV + +V
Sbjct: 24 AVLHDVFGYSAFRGPQAEIVAHVADGGDCLVLMPTGGGKSLCYQIPALVRHRRGQGAGIV 83
Query: 59 VSPLISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIP 115
VSPLI+LMQDQV +L++ G+ A +L SA T + V+ G L+++ PE+ ++
Sbjct: 84 VSPLIALMQDQVAALEEAGVRAAYLNSALTGAEAAQVERDLAAGRLDLVYVAPER--LMT 141
Query: 116 ISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
F L ++ + LFA+DEAHC+S+WGHDFR EY QL L VP +ALTATA
Sbjct: 142 PRFLDLLERSRIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPHVPRIALTATADAVT 201
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGV--KVINRGQSFVDELVQEILKSVAGAGSIIV 233
R +I+ L L + V ++SFDR N+ Y + K R Q + + AG IV
Sbjct: 202 RDEIVERLALTDARVFLSSFDRPNIRYTIVEKDSARQQLLRFIRAEHMDGDTCDAG--IV 259
Query: 234 YCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGID 293
YC++ K VEE ++ L + G++A YH M S R +F ++E VMVAT+AFGMGID
Sbjct: 260 YCLSRKKVEETAQWLAEQGIRALPYHAGMDSDVRARHQAIFRKEEGVVMVATIAFGMGID 319
Query: 294 KPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQR 353
KPDVR V H PK+LE YYQE+GR GRDG+ + W+ Y ++ + ES ++
Sbjct: 320 KPDVRFVAHLDLPKSLEGYYQETGRAGRDGLPANAWMAYGLADVVQQRRMIDESDADDVH 379
Query: 354 ----TAIMESLLAAQRYCLLTTCRR 374
TA +E+LL C TCRR
Sbjct: 380 KRVSTAKLEALLG---LCEAATCRR 401
>gi|222053514|ref|YP_002535876.1| ATP-dependent DNA helicase RecQ [Geobacter daltonii FRC-32]
gi|221562803|gb|ACM18775.1| ATP-dependent DNA helicase RecQ [Geobacter daltonii FRC-32]
Length = 605
Score = 284 bits (726), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 154/374 (41%), Positives = 210/374 (56%), Gaps = 9/374 (2%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
TL K FGY FR Q+++++ +I D V+M TG GKSLCYQ+P L A+VVSPLI
Sbjct: 8 TLLKVFGYKSFRQPQQEIVEGLIRGEDAFVIMPTGGGKSLCYQIPALHRPGVAIVVSPLI 67
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV +L+ G+ A F S+ +++ V + LL++ PE+ P F
Sbjct: 68 SLMKDQVDALQANGVKAAFYNSSLSEAKARQVLAQMHDDALDLLYVAPERLMSEP--FLE 125
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
+L V LFA+DEAHC+S+WGHDFR EY QL +LR VP +ALTATA + R DII
Sbjct: 126 RLEDVKVALFAIDEAHCVSQWGHDFRPEYVQLGRLRQLFPQVPLIALTATADPQTRNDII 185
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +A FDR N+ Y ++ D+L + L S IVY ++ K
Sbjct: 186 ERLGLGTAACYVAGFDRPNIRY---LVTEKHKPFDQL-RSFLSSRQPGEPGIVYALSRKR 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VEE++ L Q GV A YH + + R F RDE++V+VAT+AFGMGIDK ++R V
Sbjct: 242 VEEVAARLVQSGVAAAPYHAGLPERERSRVQEAFQRDELQVVVATVAFGMGIDKSNIRFV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+HY PK +ESYYQE+GR GRDG+ + L + + A Q+ + L
Sbjct: 302 VHYDLPKNIESYYQETGRAGRDGLPAEALLLFGYGDIAVARGLIENGTNAEQKRIELHKL 361
Query: 361 LAAQRYCLLTTCRR 374
A + TCRR
Sbjct: 362 NAMVGFAEAVTCRR 375
>gi|374587401|ref|ZP_09660493.1| ATP-dependent DNA helicase RecQ [Leptonema illini DSM 21528]
gi|373876262|gb|EHQ08256.1| ATP-dependent DNA helicase RecQ [Leptonema illini DSM 21528]
Length = 617
Score = 284 bits (726), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 157/377 (41%), Positives = 226/377 (59%), Gaps = 14/377 (3%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
S LK+ FGY FRP+Q++VI ++ +RD L V+ TG+GKSLCYQ+P LV K ++VVSPL
Sbjct: 25 SILKEVFGYDSFRPFQREVIDNVLSRRDTLAVLPTGAGKSLCYQIPALVFEKLSVVVSPL 84
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIPISFW 119
I+LM DQV L+ G+ A L S+ + Q + G ++L++ PE ++
Sbjct: 85 IALMNDQVQQLRAAGVPAVMLNSSLSPQEYQRNIDALQKGDARILYVAPE--TLLSPRVT 142
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
L + L +DEAHCIS+WGHDFR EY+Q+ +R +ALTATATE+VR DI
Sbjct: 143 DLLASLPLDLLTIDEAHCISDWGHDFRPEYRQIAAVRRRFPRAVCLALTATATERVRHDI 202
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDEL-VQEILKSVAGAGSIIVYCMTI 238
+ +L L +A FDR NLF ++V+ + + L E + AG I+YC +
Sbjct: 203 LTALGLDEAAQFVAGFDRPNLF--IEVLPKQNALTQTLRFLEERRDQAG----IIYCFSR 256
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
+ V++++ AL Q G A YH +G R F+RD+I+++VAT+AFGMGI+KP+VR
Sbjct: 257 RQVDDLAAALVQKGFSARPYHAGLGDAERAANQEAFLRDDIQIIVATIAFGMGINKPNVR 316
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
VIHY PK++E YYQE GR GRDG+ S C L Y+ + AK + + + E++R +E
Sbjct: 317 FVIHYDLPKSIEGYYQEIGRAGRDGLPSHCLLLYSYGDVAKLRHFIDQKE-EDERLVALE 375
Query: 359 SLLAAQRYC-LLTTCRR 374
L A R+ CRR
Sbjct: 376 HLDALVRFAEQHAGCRR 392
>gi|110636721|ref|YP_676928.1| ATP-dependent DNA helicase RecQ [Cytophaga hutchinsonii ATCC 33406]
gi|110279402|gb|ABG57588.1| ATP-dependent DNA helicase RecQ [Cytophaga hutchinsonii ATCC 33406]
Length = 725
Score = 284 bits (726), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 153/378 (40%), Positives = 230/378 (60%), Gaps = 12/378 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+++ LK FGY FR Q+++I ++ +D V+M TG+GKSLCYQLP + A+V+S
Sbjct: 9 VINKLKSVFGYDRFRGEQEEIINNVLSGKDTFVIMPTGAGKSLCYQLPAISLPGVAIVIS 68
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSV-QTKAET--GYFQLLFMTPEKACIIPIS 117
PLI+LM++QV L G+NA+FL S T + + + K ET G +LL++ PE
Sbjct: 69 PLIALMKNQVDQLNAFGVNAQFLNSTLTKAEINRVKKETLNGEIKLLYVAPESLTKEDNI 128
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKL-RTFLLGVPFVALTATATEKVR 176
+ L KA + A+DEAHCISEWGHDFR EY+++ + + +P +ALTATAT KV+
Sbjct: 129 LF--LKKAAISFVAIDEAHCISEWGHDFRPEYRKIHSIIESINNNIPIIALTATATPKVQ 186
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
+DI +L++ + + +SF+R+NLFY V R + + + + +K+ G II YC+
Sbjct: 187 LDIQKNLQMDDAVLFKSSFNRENLFYEV----RPKGDTKKKLIKFIKARKGQSGII-YCL 241
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K VEEI++ L+ VKA YH + R F+ ++ V+VAT+AFGMGIDKPD
Sbjct: 242 SRKKVEEIAELLRVNDVKALPYHAGLEPAVRMGNQDAFLNEDADVIVATIAFGMGIDKPD 301
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR V+HY PK+LE YYQE+GR GRDG C ++Y+ ++ K + + + +T +R
Sbjct: 302 VRFVVHYDTPKSLEGYYQETGRAGRDGNEGHCLMFYSMNDIIKLEKF-NKDKTVTERENA 360
Query: 357 MESLLAAQRYCLLTTCRR 374
+ L Y + CRR
Sbjct: 361 RQLLNEMSSYAESSVCRR 378
>gi|406659948|ref|ZP_11068084.1| ATP-dependent DNA helicase recQ [Cecembia lonarensis LW9]
gi|405556351|gb|EKB51290.1| ATP-dependent DNA helicase recQ [Cecembia lonarensis LW9]
Length = 726
Score = 284 bits (726), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 158/380 (41%), Positives = 230/380 (60%), Gaps = 22/380 (5%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LKK FG+S FR Q+ ++ I++ ++ V+M TG+GKSLCYQLP ++ TA+V+SPLI+
Sbjct: 9 LKKIFGFSQFRGNQEPIVDNILKGKNTFVIMPTGAGKSLCYQLPAVIQDGTAIVISPLIA 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM++QV L GINA FL S S V+ + +G +LL++ PE +
Sbjct: 69 LMKNQVDQLNAFGINAHFLNSTLNKSETNKVKKEVLSGKTKLLYVAPESLTKEENILF-- 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGV----PFVALTATATEKVRI 177
L A + A+DEAHCISEWGHDFR EY+ K+++ + V P +ALTATAT KV+
Sbjct: 127 LKDAKLSFVAIDEAHCISEWGHDFRPEYR---KIKSIIAQVGESLPIIALTATATPKVQQ 183
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG--AGSIIVYC 235
DI +L ++ + +SF+R NL+Y V+ +E ++I+K + S I+YC
Sbjct: 184 DIQRNLHMEEADLYKSSFNRTNLYYEVR-----PKIKNETKKQIIKYIKSHKGKSGIIYC 238
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
++ K VEEI+ LK G+KA YH + R + F+ +E+ V+VAT+AFGMGIDKP
Sbjct: 239 LSRKKVEEIADLLKVNGIKAAPYHAGLDQSVRIKNQDDFLNEEVDVIVATIAFGMGIDKP 298
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD-FYCGESQTENQRT 354
DVR+VIHY PK+LE YYQE+GR GRDG+ C ++Y + K + F + TE +
Sbjct: 299 DVRYVIHYDVPKSLEGYYQETGRAGRDGLEGHCLMFYRYEDIIKLEKFNKDKPVTERENA 358
Query: 355 AIMESLLAAQRYCLLTTCRR 374
++ +AA Y + CRR
Sbjct: 359 KVLLQEMAA--YAESSICRR 376
>gi|123440598|ref|YP_001004592.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122087559|emb|CAL10340.1| ATP-dependent DNA helicase [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 616
Score = 284 bits (726), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 154/373 (41%), Positives = 222/373 (59%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FRP Q+++I + +DCLVVM TG GKSLCYQ+P LVT LVVSPLIS
Sbjct: 17 LRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVTDGLTLVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S+QT +V +G +LL++ PE+ ++ SF +
Sbjct: 77 LMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQIKLLYIAPER--LVMESFLDQ 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + L AVDEAHCIS+WGHDFR EY+ L +L+ +P +ALTATA E R DI+
Sbjct: 135 LHQWRPALLAVDEAHCISQWGHDFRPEYRALGQLKQRFPNLPVIALTATADEATRGDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L P + ++SFDR N+ Y ++ + + +D+L + + +G I+YC + V
Sbjct: 195 LLNLDQPLIQVSSFDRPNIRY--TLVEKFKP-LDQLWRFVQDQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ YH + ++ R + F RD+++V+VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+T+ESYYQE+GR GRDG+ + L Y ++ A E Q+ L
Sbjct: 310 HFDIPRTIESYYQETGRAGRDGLPAEAMLLYDPADMAWLRRCLEEKPAGAQQDIERHKLN 369
Query: 362 AAQRYCLLTTCRR 374
A + TCRR
Sbjct: 370 AMGAFAEAQTCRR 382
>gi|332159828|ref|YP_004296405.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|386310846|ref|YP_006006902.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica subsp.
palearctica Y11]
gi|418243645|ref|ZP_12870111.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|420261107|ref|ZP_14763764.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|433548693|ref|ZP_20504742.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica IP 10393]
gi|318607629|emb|CBY29127.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325664058|gb|ADZ40702.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330862578|emb|CBX72731.1| ATP-dependent DNA helicase recQ [Yersinia enterocolitica W22703]
gi|351776862|gb|EHB19136.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|404511396|gb|EKA25274.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|431790342|emb|CCO67782.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica IP 10393]
Length = 616
Score = 284 bits (726), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 154/373 (41%), Positives = 222/373 (59%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FRP Q+++I + +DCLVVM TG GKSLCYQ+P LVT LVVSPLIS
Sbjct: 17 LRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVTDGLTLVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S+QT +V +G +LL++ PE+ ++ SF +
Sbjct: 77 LMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQIKLLYIAPER--LVMESFLDQ 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + L AVDEAHCIS+WGHDFR EY+ L +L+ +P +ALTATA E R DI+
Sbjct: 135 LHQWRPALLAVDEAHCISQWGHDFRPEYRALGQLKQRFPNLPVIALTATADEATRGDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L P + ++SFDR N+ Y ++ + + +D+L + + +G I+YC + V
Sbjct: 195 LLNLDQPLIQVSSFDRPNIRY--TLVEKFKP-LDQLWRFVQDQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ YH + ++ R + F RD+++V+VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+T+ESYYQE+GR GRDG+ + L Y ++ A E Q+ L
Sbjct: 310 HFDIPRTIESYYQETGRAGRDGLPAEAMLLYDPADMAWLRRCLEEKPAGAQQDIERHKLN 369
Query: 362 AAQRYCLLTTCRR 374
A + TCRR
Sbjct: 370 AMGAFAEAQTCRR 382
>gi|423539895|ref|ZP_17516286.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuB4-10]
gi|401173430|gb|EJQ80642.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuB4-10]
Length = 705
Score = 284 bits (726), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 151/372 (40%), Positives = 223/372 (59%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ ++E +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLEGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + F +
Sbjct: 69 LMKDQVDTLIQNGISATYINSSISMTEANHRIQLAKQGHYKLLYVAPER--LDSREFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVRDDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
+L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 KTLEINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + V YH M R E LF+RDE+ VM+AT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLMKAEVSVSKYHAGMSDHDRNEQQELFLRDEVSVMIATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSECILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>gi|399018929|ref|ZP_10721080.1| ATP-dependent DNA helicase RecQ [Herbaspirillum sp. CF444]
gi|398098859|gb|EJL89138.1| ATP-dependent DNA helicase RecQ [Herbaspirillum sp. CF444]
Length = 614
Score = 284 bits (726), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 156/375 (41%), Positives = 225/375 (60%), Gaps = 12/375 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGYS FR Q D+++ +++ D LV+M TG GKSLCYQ+P LV +VVSPLI+
Sbjct: 20 LETVFGYSSFRGQQGDIVRHVVQGGDALVLMPTGGGKSLCYQIPALVRDGVGVVVSPLIA 79
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT-DSSVQT--KAETGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV +L + G+ A FL S QT D ++Q + +G +L++ PE+ + P +
Sbjct: 80 LMQDQVDALAEVGVRAAFLNSTQTFDEAMQIERRVRSGDLDVLYVAPER-LMTPRCL--E 136
Query: 122 LLKAG-VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
LL+A + LFA+DEAHC+S+WGHDFR EY +L L VP +ALTATA ++ R +II
Sbjct: 137 LLEAAHIALFAIDEAHCVSQWGHDFRPEYIKLSVLHERFPNVPRIALTATADQQTREEII 196
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
+ L+L++ ++SFDR N+ Y + G+ + + ++ AG +VYC++ K
Sbjct: 197 HRLQLEDARQFVSSFDRPNIRYQIVEKANGRKQLLDFIESEHADDAG----VVYCLSRKK 252
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VEE ++ LKQ G+ A YH M R F+R++ VMVAT+AFGMGIDKPDVR V
Sbjct: 253 VEETAEFLKQSGINALPYHAGMDYAKRTANQARFLREDKIVMVATIAFGMGIDKPDVRFV 312
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME-S 359
H PK++E YYQE+GR GRDG+ + W+ Y + + ES+ + ++
Sbjct: 313 AHLDLPKSIEGYYQETGRAGRDGLPANAWMAYGLQDVVQQRRMIAESEADETFKRVLGIK 372
Query: 360 LLAAQRYCLLTTCRR 374
L A C CRR
Sbjct: 373 LDAMLGLCETLHCRR 387
>gi|445060297|ref|YP_007385701.1| ATP-dependent DNA helicase RecQ [Staphylococcus warneri SG1]
gi|443426354|gb|AGC91257.1| ATP-dependent DNA helicase RecQ [Staphylococcus warneri SG1]
Length = 592
Score = 284 bits (726), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 160/377 (42%), Positives = 220/377 (58%), Gaps = 12/377 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M TL YFGY FRP Q+++I +II+ R+ L V+ TG GKS+CYQ+P L+ G T +V+S
Sbjct: 1 MQETLSHYFGYDTFRPGQEEIISKIIDHRNVLGVLPTGGGKSICYQVPGLMLGGTTIVIS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV LK GINA F+ S+ T ++ +G+ Q L++ PE+
Sbjct: 61 PLISLMKDQVDQLKAMGINAAFINSSLTQKQQKEIEQDLISGHIQFLYVAPER--FENQY 118
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQ-LDKLRTFLLGVPFVALTATATEKVR 176
F S+L K + L A DEAHCIS+WGHDFR Y+ + K+ T VALTATAT +V+
Sbjct: 119 FLSQLRKVNIRLVAFDEAHCISKWGHDFRPSYQNVIQKVFTLPQDFAIVALTATATAEVQ 178
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DI++ L ++ S R+NL + V + Q FV + V E AG I+YC
Sbjct: 179 QDIMDKLNIEANDEVKTSTKRRNLIFKVNPTYQRQKFVVDYVTE---HDEEAG--IIYCS 233
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
T K VEE+ + L+ VK YH + +K RE A F+ D + V++AT AFGMGIDK +
Sbjct: 234 TRKQVEELQEVLESHKVKCTIYHAGLTNKEREAAQNDFLYDRVNVVIATNAFGMGIDKSN 293
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY P LESYYQE+GR GRDG+ S C L ++ + +++ SQ ++
Sbjct: 294 VRFVIHYNMPGDLESYYQEAGRAGRDGLKSECILLFSERDRGLHEYFISVSQADDDYKEK 353
Query: 357 M-ESLLAAQRYCLLTTC 372
M E L +Y C
Sbjct: 354 MGEKLTKMLQYTKTKKC 370
>gi|443244229|ref|YP_007377454.1| ATP-dependent DNA helicase [Nonlabens dokdonensis DSW-6]
gi|442801628|gb|AGC77433.1| ATP-dependent DNA helicase [Nonlabens dokdonensis DSW-6]
Length = 730
Score = 284 bits (726), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 155/346 (44%), Positives = 216/346 (62%), Gaps = 17/346 (4%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
LKKYFG+ FR QK VI ++ K DC V+M TG GKSLCYQLP L+ TA+VVSPL
Sbjct: 10 ENLKKYFGFEQFRGLQKQVITSLLNKEDCFVIMPTGGGKSLCYQLPALMQEGTAIVVSPL 69
Query: 63 ISLMQDQVMSLKQRGIN-----AEFLGSAQTDSSVQ---TKAETGYFQLLFMTPEKACII 114
I+LM++QV ++ RG++ A L S+ + + VQ E G +LL++ PE +
Sbjct: 70 IALMKNQVDAI--RGVSDHDGVAHVLNSSLSKTDVQQVKDDIENGITKLLYVAPE--SLT 125
Query: 115 PISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFL-LGVPFVALTATATE 173
+ L + + AVDEAHCISEWGHDFR EY+ L K+ + +P + LTATAT
Sbjct: 126 KEEYVDFLKQQKISFLAVDEAHCISEWGHDFRPEYRNLRKIIDRIGSDIPIIGLTATATP 185
Query: 174 KVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIV 233
KV+ DI+ +L++ + ASF+R NLFY V+ + VD + +K G S IV
Sbjct: 186 KVQEDILKNLQITDATTFQASFNRPNLFYEVR---PKTANVDADITRFIKQNEGK-SGIV 241
Query: 234 YCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGID 293
YC++ K VEE+++ L+ G+KA YH + +K R + +F+ ++ V+VAT+AFGMGID
Sbjct: 242 YCLSRKRVEELAQVLQVNGIKAVPYHAGLDAKTRVKHQDMFLMEDTDVVVATIAFGMGID 301
Query: 294 KPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAK 339
KPDVR VIH+ PK++ESYYQE+GR GRDG C YY+ + K
Sbjct: 302 KPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAYYSYKDIEK 347
>gi|407717397|ref|YP_006838677.1| ATP-dependent DNA helicase RecQ [Cycloclasticus sp. P1]
gi|407257733|gb|AFT68174.1| ATP-dependent DNA helicase RecQ [Cycloclasticus sp. P1]
Length = 704
Score = 284 bits (726), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 157/379 (41%), Positives = 222/379 (58%), Gaps = 16/379 (4%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
S L+ FGY FR Q ++I + + RD V+M TG GKSLCYQ+P ++ TA+VVSPL
Sbjct: 6 SILQSTFGYDAFREPQGEIIHELEQGRDAFVLMPTGGGKSLCYQIPAVLRDGTAIVVSPL 65
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFW 119
I+LMQDQV +L Q GI A +L S + V+ + G LL++ PE+ + PI
Sbjct: 66 IALMQDQVDALNQLGIKAAYLNSTLNVAEAREVEAQLLNGALDLLYVAPER-LLNPIML- 123
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
S L + + LFA+DEAHC+S+WGHDFR EY++L L VP +ALTATA ++ R +I
Sbjct: 124 SLLERCHIALFAIDEAHCVSQWGHDFRPEYQKLRVLHERFPQVPRIALTATADQRTRDEI 183
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
I L+L+ V I SFDR N+ Y + N + + +QE AG IVYC++ K
Sbjct: 184 IAQLQLEGARVFINSFDRPNIHYAISEGNNPKLRLWRFIQENHAQDAG----IVYCLSRK 239
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
VE ++ L + G A YH + + R++ + F+RDE ++VAT+AFGMGIDKPDVR
Sbjct: 240 KVEATAEWLTEQGRIALPYHAGLSQELRQKNQQRFLRDEGVIIVATIAFGMGIDKPDVRF 299
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI--- 356
V H PK++E+YYQE+GR GRDG + W+ Y + + S+ + +
Sbjct: 300 VAHLSLPKSIEAYYQETGRAGRDGEPANAWMAYGLQDVLTLRQFMQNSKADEAHKRVEHN 359
Query: 357 -MESLLAAQRYCLLTTCRR 374
+ES+L C L CRR
Sbjct: 360 KLESMLG---LCELIACRR 375
>gi|421359294|ref|ZP_15809589.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|421361216|ref|ZP_15811481.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|421369214|ref|ZP_15819397.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|421370097|ref|ZP_15820268.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|421375163|ref|ZP_15825277.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|421381841|ref|ZP_15831895.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|421383689|ref|ZP_15833723.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|421388254|ref|ZP_15838246.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|421395342|ref|ZP_15845279.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|421399721|ref|ZP_15849615.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|421401736|ref|ZP_15851603.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|421408846|ref|ZP_15858644.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|421410862|ref|ZP_15860634.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|421417923|ref|ZP_15867631.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|421420145|ref|ZP_15869824.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|421424283|ref|ZP_15873927.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|421428799|ref|ZP_15878402.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|421436041|ref|ZP_15885575.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|421438465|ref|ZP_15887961.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|421442493|ref|ZP_15891943.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|421447151|ref|ZP_15896554.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|423142444|ref|ZP_17130082.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
gi|436590140|ref|ZP_20511973.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|436773695|ref|ZP_20520937.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|436801171|ref|ZP_20524764.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|436806449|ref|ZP_20526657.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|436813890|ref|ZP_20532071.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|436846021|ref|ZP_20539079.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|436847880|ref|ZP_20539851.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|436859968|ref|ZP_20547789.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|436867019|ref|ZP_20552419.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|436868646|ref|ZP_20553305.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|436876222|ref|ZP_20557703.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|436890157|ref|ZP_20565743.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|436898410|ref|ZP_20570408.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|436901964|ref|ZP_20572847.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|436908529|ref|ZP_20575758.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|436917083|ref|ZP_20580671.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|436922688|ref|ZP_20584694.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|436937839|ref|ZP_20592942.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|436940075|ref|ZP_20594112.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|436948403|ref|ZP_20598638.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|436958486|ref|ZP_20603161.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|436967336|ref|ZP_20607279.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|436980997|ref|ZP_20613386.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|437000083|ref|ZP_20620555.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|437008856|ref|ZP_20623591.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|437014194|ref|ZP_20625395.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|437026436|ref|ZP_20629799.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|437037336|ref|ZP_20634192.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|437053403|ref|ZP_20642484.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|437061353|ref|ZP_20646907.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|437063066|ref|ZP_20647795.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|437071962|ref|ZP_20652217.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|437083523|ref|ZP_20659197.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|437092191|ref|ZP_20663717.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|437098966|ref|ZP_20665653.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|437119083|ref|ZP_20670704.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|437131539|ref|ZP_20677442.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|437139344|ref|ZP_20681754.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|437142342|ref|ZP_20683688.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|437149724|ref|ZP_20688293.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|437158406|ref|ZP_20693315.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|437165051|ref|ZP_20697379.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|437173698|ref|ZP_20701890.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|437184963|ref|ZP_20708690.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|437234431|ref|ZP_20713723.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
gi|437257290|ref|ZP_20715882.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|437265075|ref|ZP_20720272.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|437273609|ref|ZP_20724778.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|437284293|ref|ZP_20729497.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|437318852|ref|ZP_20738133.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|437320960|ref|ZP_20738439.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|437342283|ref|ZP_20745299.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|437395546|ref|ZP_20751328.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22558]
gi|437419348|ref|ZP_20754380.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|437439041|ref|ZP_20757093.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 40-18]
gi|437463867|ref|ZP_20763421.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|437472396|ref|ZP_20765495.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|437487635|ref|ZP_20769971.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|437512325|ref|ZP_20777246.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|437529101|ref|ZP_20780305.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|437557237|ref|ZP_20785110.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|437569652|ref|ZP_20787960.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|437582271|ref|ZP_20792322.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|437599758|ref|ZP_20797007.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|437620810|ref|ZP_20804300.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|437630225|ref|ZP_20806226.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|437656115|ref|ZP_20810623.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|437674556|ref|ZP_20816555.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|437689555|ref|ZP_20820139.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|437703289|ref|ZP_20824415.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|437727903|ref|ZP_20830344.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|437778162|ref|ZP_20836273.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|437809292|ref|ZP_20840588.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|437899536|ref|ZP_20849750.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 6.0562-1]
gi|438058078|ref|ZP_20856562.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
gi|438088905|ref|ZP_20860120.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|438102051|ref|ZP_20864758.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|438107411|ref|ZP_20866718.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|440762769|ref|ZP_20941820.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Agona str. SH11G1113]
gi|440766569|ref|ZP_20945558.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Agona str. SH08SF124]
gi|440771658|ref|ZP_20950571.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|445130940|ref|ZP_21381550.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
gi|445141894|ref|ZP_21385681.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|445150436|ref|ZP_21389723.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|445174893|ref|ZP_21397165.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|445204757|ref|ZP_21401335.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|445230566|ref|ZP_21405428.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|445303745|ref|ZP_21411560.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 436]
gi|445328683|ref|ZP_21413170.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|445345133|ref|ZP_21418007.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|445358858|ref|ZP_21422890.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
gi|379050373|gb|EHY68266.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
gi|395982718|gb|EJH91917.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|395985586|gb|EJH94755.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|395993696|gb|EJI02788.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|395999768|gb|EJI08784.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|396005742|gb|EJI14716.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|396007658|gb|EJI16603.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|396012742|gb|EJI21637.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|396020771|gb|EJI29610.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|396021181|gb|EJI30008.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|396026583|gb|EJI35349.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|396026668|gb|EJI35433.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|396034171|gb|EJI42873.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|396039462|gb|EJI48088.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|396045947|gb|EJI54537.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|396047582|gb|EJI56154.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|396055399|gb|EJI63885.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|396060547|gb|EJI68990.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|396060632|gb|EJI69074.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|396072908|gb|EJI81215.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|396073411|gb|EJI81713.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|396075234|gb|EJI83509.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|434958340|gb|ELL51900.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|434961813|gb|ELL55066.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|434969388|gb|ELL62095.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|434974710|gb|ELL67042.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|434978162|gb|ELL70220.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|434980142|gb|ELL72071.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|434987107|gb|ELL78757.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|434991131|gb|ELL82651.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|434993686|gb|ELL85085.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|435003891|gb|ELL94890.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|435006652|gb|ELL97528.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|435010977|gb|ELM01723.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|435013508|gb|ELM04143.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|435020275|gb|ELM10688.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|435030324|gb|ELM20355.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|435031946|gb|ELM21892.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|435034925|gb|ELM24781.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|435043992|gb|ELM33691.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|435046917|gb|ELM36526.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|435055947|gb|ELM45352.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|435056032|gb|ELM45436.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|435059378|gb|ELM48656.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|435061695|gb|ELM50916.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|435067089|gb|ELM56159.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|435067431|gb|ELM56472.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|435085682|gb|ELM74230.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|435086732|gb|ELM75262.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|435088035|gb|ELM76493.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|435089334|gb|ELM77771.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|435089411|gb|ELM77847.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|435103456|gb|ELM91546.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|435108066|gb|ELM96043.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|435110863|gb|ELM98770.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|435112004|gb|ELM99887.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|435124000|gb|ELN11483.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|435126022|gb|ELN13434.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|435130597|gb|ELN17826.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|435131711|gb|ELN18918.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|435142463|gb|ELN29364.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|435147536|gb|ELN34299.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|435151498|gb|ELN38139.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|435154464|gb|ELN41044.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|435158385|gb|ELN44787.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|435160339|gb|ELN46619.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|435167446|gb|ELN53370.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|435177494|gb|ELN62817.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|435177804|gb|ELN63075.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|435178514|gb|ELN63722.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|435185584|gb|ELN70443.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|435192097|gb|ELN76651.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
gi|435193062|gb|ELN77563.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|435196876|gb|ELN81195.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|435198704|gb|ELN82860.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22558]
gi|435201681|gb|ELN85570.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|435212790|gb|ELN95748.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 40-18]
gi|435217896|gb|ELO00304.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|435226055|gb|ELO07650.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|435230671|gb|ELO11962.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|435232525|gb|ELO13620.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|435241056|gb|ELO21444.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|435245892|gb|ELO25920.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|435250142|gb|ELO29884.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|435256685|gb|ELO35980.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|435263151|gb|ELO42218.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|435264044|gb|ELO43066.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|435272436|gb|ELO50837.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|435278119|gb|ELO55991.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|435282011|gb|ELO59650.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|435284000|gb|ELO61512.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|435291040|gb|ELO67927.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|435293720|gb|ELO70384.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|435299379|gb|ELO75529.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|435303382|gb|ELO79270.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|435314209|gb|ELO87664.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
gi|435317076|gb|ELO90139.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|435321829|gb|ELO94188.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 6.0562-1]
gi|435323956|gb|ELO95934.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|435333513|gb|ELP04315.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|436420777|gb|ELP18634.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|436421917|gb|ELP19757.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Agona str. SH11G1113]
gi|436422492|gb|ELP20328.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Agona str. SH08SF124]
gi|444850160|gb|ELX75264.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|444851274|gb|ELX76366.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
gi|444856864|gb|ELX81883.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|444858827|gb|ELX83800.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|444861272|gb|ELX86157.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|444864271|gb|ELX89075.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|444878165|gb|ELY02289.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 436]
gi|444879443|gb|ELY03543.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|444879737|gb|ELY03830.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|444885738|gb|ELY09515.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
Length = 609
Score = 284 bits (726), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 221/375 (58%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+ +I + RDCLVVM TG GKSLCYQ+P L+ +VVSPLI
Sbjct: 16 VLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLI 75
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q+ V TG +LL++ PE+ ++ +F
Sbjct: 76 SLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQIRLLYIAPER--LMLDNFLD 133
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R+DII
Sbjct: 134 HLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTTRLDII 193
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 194 RLLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 248
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 249 VEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 308
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I
Sbjct: 309 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPAGQLQDIERHK 367
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 368 LNAMGAFAEAQTCRR 382
>gi|385786868|ref|YP_005817977.1| ATP-dependent DNA helicase RecQ [Erwinia sp. Ejp617]
gi|310766140|gb|ADP11090.1| ATP-dependent DNA helicase RecQ [Erwinia sp. Ejp617]
Length = 610
Score = 284 bits (726), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 157/374 (41%), Positives = 219/374 (58%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FRP Q+ +IQ + RDCLVVM TG GKSLCYQ+P LV LVVSPLIS
Sbjct: 17 LRDTFGYQQFRPGQQTIIQESLNGRDCLVVMPTGGGKSLCYQIPALVRQGLTLVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S Q +V +G +LL++ PE+ ++ +F +
Sbjct: 77 LMKDQVDQLLANGVAAACLNSTQNREEQQNVMAGCRSGTVRLLYIAPER--LMMDNFLEQ 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + AVDEAHCIS+WGHDFR EY L +LR L VP +ALTATA E R DI
Sbjct: 135 LTHCNPAMLAVDEAHCISQWGHDFRPEYGALGQLRQRLPDVPVMALTATADETTRNDIAR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L+L +P + I+SFDR N+ Y ++ + + ++L++ + G I+YC + V
Sbjct: 195 LLRLNDPLIQISSFDRPNIRY--TLVEKFKP-TEQLLRYVQDQRGKCG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ G YH M + R F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSRGLSVGAYHAGMDNAHRAHVQEAFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L Y ++ A C E +T+ I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEALLLYDPADMAWLR-RCMEEKTQGPLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|438141963|ref|ZP_20875172.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
gi|434939609|gb|ELL46400.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
Length = 609
Score = 284 bits (726), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 221/375 (58%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+ +I + RDCLVVM TG GKSLCYQ+P L+ +VVSPLI
Sbjct: 16 VLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLI 75
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q+ V TG +LL++ PE+ ++ +F
Sbjct: 76 SLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQIRLLYIAPER--LMLDNFLD 133
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R+DII
Sbjct: 134 HLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTTRLDII 193
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 194 RLLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 248
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 249 VEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 308
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I
Sbjct: 309 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPAGQLQDIERHK 367
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 368 LNAMGAFAEAQTCRR 382
>gi|340001407|ref|YP_004732291.1| ATP-dependent DNA helicase [Salmonella bongori NCTC 12419]
gi|339514769|emb|CCC32539.1| ATP-dependent DNA helicase [Salmonella bongori NCTC 12419]
Length = 609
Score = 284 bits (726), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 221/375 (58%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+ +I + RDCLVVM TG GKSLCYQ+P L+ +VVSPLI
Sbjct: 16 VLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLI 75
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q+ V TG +LL++ PE+ ++ +F
Sbjct: 76 SLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQIRLLYIAPER--LMLDNFLD 133
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R+DII
Sbjct: 134 HLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTTRLDII 193
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 194 RLLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 248
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 249 VEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 308
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I
Sbjct: 309 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPAGQLQDIERHK 367
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 368 LNAMGAFAEAQTCRR 382
>gi|418576852|ref|ZP_13140984.1| ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
gi|379324517|gb|EHY91663.1| ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
Length = 592
Score = 284 bits (726), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 157/356 (44%), Positives = 216/356 (60%), Gaps = 13/356 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M STL YFGY +RP QK++I R++ ++ L V+ TG GKS+CYQ+P L+ G T +V+S
Sbjct: 1 MESTLSHYFGYDTYRPGQKEIITRVMNHQNVLGVLPTGGGKSICYQVPGLMLGGTTIVIS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV LK GI+A +L S+ T ++T+ G Q L++ PE+ +
Sbjct: 61 PLISLMKDQVDQLKAMGIHAAYLNSSLTQKQQKEIETQLRKGEIQFLYVAPER--FDNVY 118
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPF--VALTATATEKV 175
F L + + L A DEAHCIS+WGHDFR Y+ + + F L F VALTATAT +V
Sbjct: 119 FIRLLQQLSIHLVAFDEAHCISKWGHDFRPSYQDVIH-KVFALPQDFTIVALTATATIEV 177
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYC 235
+ DI+ L + S R+NL + V + Q FV E V+E K+ AG I+YC
Sbjct: 178 QKDIMERLNIGKHDEVKTSTKRRNLVFKVNPTYQRQKFVMEYVKE-HKNAAG----IIYC 232
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
T K VEE+ AL+ GV + YH + +K RE A F+ D +RV+VAT AFGMGIDK
Sbjct: 233 STRKQVEELHDALENNGVDSTIYHAGLSNKEREAAQNDFVYDRVRVVVATNAFGMGIDKS 292
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTEN 351
+VR VIHY P LESYYQE+GR GRDG+ S C L ++ + ++ S+ ++
Sbjct: 293 NVRFVIHYNMPGDLESYYQEAGRAGRDGLNSDCILLFSERDIGLHQYFISSSKADD 348
>gi|378957075|ref|YP_005214562.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|357207686|gb|AET55732.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
Length = 615
Score = 284 bits (726), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 221/375 (58%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+ +I + RDCLVVM TG GKSLCYQ+P L+ +VVSPLI
Sbjct: 22 VLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLI 81
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q+ V TG +LL++ PE+ ++ +F
Sbjct: 82 SLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQIRLLYIAPER--LMLDNFLD 139
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R+DII
Sbjct: 140 HLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTTRLDII 199
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 200 RLLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 254
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 255 VEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 314
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I
Sbjct: 315 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPAGQLQDIERHK 373
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 374 LNAMGAFAEAQTCRR 388
>gi|73663307|ref|YP_302088.1| ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72495822|dbj|BAE19143.1| ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 592
Score = 284 bits (726), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 157/356 (44%), Positives = 216/356 (60%), Gaps = 13/356 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M STL YFGY +RP QK++I R++ ++ L V+ TG GKS+CYQ+P L+ G T +V+S
Sbjct: 1 MESTLSHYFGYDTYRPGQKEIITRVMNHQNVLGVLPTGGGKSICYQVPGLMLGGTTIVIS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV LK GI+A +L S+ T ++T+ G Q L++ PE+ +
Sbjct: 61 PLISLMKDQVDQLKAMGIHAAYLNSSLTQKQQKEIETQLRKGEIQFLYVAPER--FDNVY 118
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPF--VALTATATEKV 175
F L + + L A DEAHCIS+WGHDFR Y+ + + F L F VALTATAT +V
Sbjct: 119 FIRLLQQLSIHLVAFDEAHCISKWGHDFRPSYQDVIH-KVFALPQDFTIVALTATATIEV 177
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYC 235
+ DI+ L + S R+NL + V + Q FV E V+E K+ AG I+YC
Sbjct: 178 QKDIMERLNIGKHDEVKTSTKRRNLVFKVNPTYQRQKFVMEYVKE-HKNAAG----IIYC 232
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
T K VEE+ AL+ GV + YH + +K RE A F+ D +RV+VAT AFGMGIDK
Sbjct: 233 STRKQVEELHDALENNGVDSTIYHAGLSNKEREAAQNDFVYDRVRVVVATNAFGMGIDKS 292
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTEN 351
+VR VIHY P LESYYQE+GR GRDG+ S C L ++ + ++ S+ ++
Sbjct: 293 NVRFVIHYNMPGDLESYYQEAGRAGRDGLNSDCILLFSERDIGLHQYFISSSKADD 348
>gi|307132960|ref|YP_003884976.1| ATP-dependent DNA helicase [Dickeya dadantii 3937]
gi|306530489|gb|ADN00420.1| ATP-dependent DNA helicase [Dickeya dadantii 3937]
Length = 614
Score = 284 bits (726), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 146/340 (42%), Positives = 210/340 (61%), Gaps = 10/340 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L++ FGY FRP Q+ +I + RDCLV+M TG GKSLCYQ+P LV LVVSP
Sbjct: 19 MQVLRETFGYQQFRPGQQAIINAAVSGRDCLVIMPTGGGKSLCYQIPALVLEGLTLVVSP 78
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDSSVQ---TKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ G+ A L S QT Q + G +LL++ PE+ + F
Sbjct: 79 LISLMKDQVDQLQAYGVAAACLNSTQTREQQQAVFSACRRGELKLLYIAPER--LTTDGF 136
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+L L A+DEAHCIS+WGHDFR EY+ L +++ L +P VALTATA E R D
Sbjct: 137 LEQLTHWNTTLIAIDEAHCISQWGHDFRPEYRALGQIKQQLPALPIVALTATADETTRQD 196
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I L L++P + I+SFDR N+ Y ++ + + +D+L + +G IVYC +
Sbjct: 197 IARLLDLRDPLINISSFDRPNIRY--TLVEKFKP-LDQLWLFVQGQRGKSG--IVYCNSR 251
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE++ L+ G+ G YH + + R + F+RD+++V+VAT+AFGMGI+KP+VR
Sbjct: 252 AKVEDLCARLQNRGLSVGAYHAGLDNDRRSQVQEAFLRDDLQVVVATVAFGMGINKPNVR 311
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
V+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A
Sbjct: 312 FVVHFDIPRNIESYYQETGRAGRDGLPAEAALFYDPADMA 351
>gi|119773474|ref|YP_926214.1| ATP-dependent DNA helicase RecQ [Shewanella amazonensis SB2B]
gi|119765974|gb|ABL98544.1| ATP-dependent DNA helicase RecQ [Shewanella amazonensis SB2B]
Length = 607
Score = 284 bits (726), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 158/374 (42%), Positives = 226/374 (60%), Gaps = 13/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q++V+ R+ + DCLV+M TG GKSLCYQ+P LV LVVSPLIS
Sbjct: 17 LQQVFGYRDFRPGQREVMTRVCQGEDCLVIMPTGGGKSLCYQVPALVLPGVTLVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV SL Q G+ A +L S+Q V + G +LL+++PE+ ++ F S+
Sbjct: 77 LMKDQVDSLIQSGVAAAYLNSSQPREQAIEVLRQLRFGELKLLYVSPER--LLQGDFLSR 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + LFAVDEAHCISEWGHDFR EY L +L+ VP +ALTATA E R I
Sbjct: 135 LDELHISLFAVDEAHCISEWGHDFRPEYAALGQLKQRFPHVPVMALTATADEATRSSICE 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGV-KVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L ++ P+ +ASFDR N+ Y V + +N +++ ++S GA I VYC + +
Sbjct: 195 RLGIQ-PFQHLASFDRPNIRYTVAEKLNAANQ-----LRQFIQSQKGANGI-VYCSSRRR 247
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+E+++ L+Q G A YH M R F++D+I V+VAT+AFGMGI+K +VR V
Sbjct: 248 VDEVAERLRQQGFYAEGYHAGMTQDERASVQDRFLKDQIDVVVATVAFGMGINKSNVRFV 307
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+HY PK++ESYYQE+GR GRDG+ + L + ++ + + + Q+ L
Sbjct: 308 VHYDIPKSIESYYQETGRAGRDGLDAEALLLFDPADIGRVRHLIEQQEPGPQQQVEFHKL 367
Query: 361 LAAQRYCLLTTCRR 374
+ + TCRR
Sbjct: 368 YSMAAFAEAQTCRR 381
>gi|379710384|ref|YP_005265589.1| ATP-dependent DNA helicase [Nocardia cyriacigeorgica GUH-2]
gi|374847883|emb|CCF64955.1| ATP-dependent DNA helicase [Nocardia cyriacigeorgica GUH-2]
Length = 623
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 153/378 (40%), Positives = 222/378 (58%), Gaps = 18/378 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FR Q +++ ++ D LV+M TG GKSLCYQ+P LV +VVSPLI+
Sbjct: 26 LRRVFGYDSFRGNQAEIVGHVVAGGDALVLMPTGGGKSLCYQVPALVRPGVGVVVSPLIA 85
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV +L G+ A FL S Q V+ + G LL++ PE+ + + ++
Sbjct: 86 LMQDQVDALSALGVRAGFLNSTQNPDQRRMVEAQYVAGELDLLYLAPER---LRLESTAR 142
Query: 122 LLKAG-VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
LL+ G + LFA+DEAHC+S+WGHDFR +Y L L VP +ALTATATEK R +II
Sbjct: 143 LLERGTIALFAIDEAHCVSQWGHDFRPDYLALSLLHERWPEVPRIALTATATEKTRDEII 202
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +ASFDR N+ Y ++ NR D + + +++ + IVYC++
Sbjct: 203 ERLDLGGARRFVASFDRPNIQYRIEPKNR----PDRQLLDFIRAEHAGDAGIVYCLSRNS 258
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L + G++A YH + ++ R E F+R++ V+VAT+AFGMGIDKPDVR V
Sbjct: 259 VEKTAAFLTENGIRAVPYHAGLDNRTRAENQARFLREDGLVVVATIAFGMGIDKPDVRFV 318
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKG----DFYCGESQTENQRTAI 356
H PK++E YYQE+GR GRDG+ S W+ Y ++ + D G++ Q
Sbjct: 319 AHLDLPKSVEGYYQETGRAGRDGLPSTAWMVYGLNDVVQQRKLIDASDGDAAHRRQLQLH 378
Query: 357 MESLLAAQRYCLLTTCRR 374
++++LA C CRR
Sbjct: 379 LDAMLA---LCETVHCRR 393
>gi|297538336|ref|YP_003674105.1| ATP-dependent DNA helicase RecQ [Methylotenera versatilis 301]
gi|297257683|gb|ADI29528.1| ATP-dependent DNA helicase RecQ [Methylotenera versatilis 301]
Length = 609
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 155/380 (40%), Positives = 221/380 (58%), Gaps = 14/380 (3%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ TL FGYS FR Q+ +++ + D LV+M TG GKSLCYQLP L+ +VVSP
Sbjct: 7 LQTLHDVFGYSTFRGEQQAIVEHVTAGGDALVLMPTGGGKSLCYQLPALLREGVGIVVSP 66
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQ-TDSSVQTKAE--TGYFQLLFMTPEKACIIPISF 118
LI+LMQDQV +LKQ G+ A FL S+Q D + + A+ G+ Q++++ PE+ +
Sbjct: 67 LIALMQDQVDALKQLGVRAAFLNSSQDADEAREITAQLMRGHLQIVYVAPERLLMSSFLS 126
Query: 119 WSKLLK--AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
++ AG+ LFA+DEAHC+S+WGHDFR EY++L L VP +ALTATA R
Sbjct: 127 LLDEIEEGAGIALFAIDEAHCVSQWGHDFRPEYRKLTVLHERFPHVPRIALTATADAPTR 186
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGV--KVINRGQSFVDELVQEILKSVAGAGSIIVY 234
+I+ LKL+ ++SFDR N+ Y V K R Q ++ L S + I+Y
Sbjct: 187 AEIVERLKLEEARQFVSSFDRPNIKYRVTQKANARQQ------LEAFLDSEHANDAGIIY 240
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C++ K VEE ++ LK G A YH + + R + R F+R+E +MVAT+AFGMGIDK
Sbjct: 241 CLSRKKVEETAEWLKSRGWDALPYHAGLDASVRNQNQRRFLREEGVIMVATVAFGMGIDK 300
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
P+VR V H PK++E YYQE+GR GRD + + W+ Y + +R
Sbjct: 301 PNVRFVAHLDLPKSMEGYYQETGRAGRDDLPANAWMTYGLGDVVSMRKMLDSGDAPEERK 360
Query: 355 AI-MESLLAAQRYCLLTTCR 373
A+ + L A +C T+CR
Sbjct: 361 AVERQKLDALLGFCESTSCR 380
>gi|298209031|ref|YP_003717210.1| ATP-dependent DNA helicase [Croceibacter atlanticus HTCC2559]
gi|83848958|gb|EAP86827.1| putative ATP-dependent DNA helicase [Croceibacter atlanticus
HTCC2559]
Length = 734
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 158/380 (41%), Positives = 234/380 (61%), Gaps = 20/380 (5%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LKKYFG+S F+ Q+ VI+ I+ D V+M TG GKSLCYQLP L+ TA+VVSPLI+
Sbjct: 12 LKKYFGFSQFKGLQEQVIKSIVSNEDTFVIMPTGGGKSLCYQLPALIKDGTAIVVSPLIA 71
Query: 65 LMQDQVMSLK----QRGINAEFLGSAQTDSSV-QTKAE--TGYFQLLFMTPEKACIIPIS 117
LM++QV +L+ Q GI A L S+ + + Q K + G +LL++ PE +
Sbjct: 72 LMKNQVDALRSISSQEGI-AHVLNSSLNKTEINQVKLDITNGVTKLLYVAPE--SLTKDE 128
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKL-RTFLLGVPFVALTATATEKVR 176
+ L + + A+DEAHCISEWGHDFR EY+ L K+ + +P + LTATAT KV+
Sbjct: 129 YVDFLKEQTISFLAIDEAHCISEWGHDFRPEYRNLKKIIKRIGDDIPIIGLTATATPKVQ 188
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DI+ +L + N ASF+R NL+Y V+ + + ++++ I K +G I+YC+
Sbjct: 189 EDILKNLNMSNANTFKASFNRPNLYYEVRP--KTKEVFSDIIRFIKKRTGKSG--IIYCL 244
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K VEE+++ L+ G+ A YH + +K R + +F+ +++ V+VAT+AFGMGIDKPD
Sbjct: 245 SRKSVEELAQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGMGIDKPD 304
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD-FYCGESQTENQ-RT 354
VR VIH+ PK+LESYYQE+GR GRDG C +YA + K + F G+ E +
Sbjct: 305 VRFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAFYAYKDIEKLEKFMSGKPVAEQEIGH 364
Query: 355 AIMESLLAAQRYCLLTTCRR 374
A+++ ++A Y + RR
Sbjct: 365 ALLQEVVA---YAETSMSRR 381
>gi|359395140|ref|ZP_09188193.1| ATP-dependent DNA helicase recQ [Halomonas boliviensis LC1]
gi|357972387|gb|EHJ94832.1| ATP-dependent DNA helicase recQ [Halomonas boliviensis LC1]
Length = 605
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 153/377 (40%), Positives = 227/377 (60%), Gaps = 9/377 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L++ FGY FR Q+ +I+ +I D LV+M TG GKSLCYQ+P L+ TA+VVSP
Sbjct: 10 LKVLQEVFGYDRFRGPQQAIIEHVIAGGDALVLMPTGGGKSLCYQIPALLREGTAIVVSP 69
Query: 62 LISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LI+LMQDQV +LKQ G+ A++L S+ V+ + G LL++ PE+ +
Sbjct: 70 LIALMQDQVAALKQNGVRADYLNSSLDYHEAVEVENRLRAGELDLLYVAPERLATARLQM 129
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
L + + LFA+DEAHC+S+WGHDFR EY+QL L VP +ALTATA R D
Sbjct: 130 L--LEQTQIALFAIDEAHCVSQWGHDFRPEYRQLSHLHQRFPQVPRIALTATADVPTRGD 187
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L+L+ + + FDR N+ Y + N+G++ ++L+Q I + G I VYC++
Sbjct: 188 IMEHLQLQEAALYNSGFDRPNIRYHI-AENQGKA-KEQLLQFIREHHDGEAGI-VYCLSR 244
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
+ VEE + L++ G+ A YH + ++ R+ F+R++ V+VAT+AFGMGIDKPDVR
Sbjct: 245 RKVEETAAWLERQGLTALPYHAGLPAEQRQHHQTRFLREDGVVIVATIAFGMGIDKPDVR 304
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V H PK++E+YYQE+GR GRDG+ + W+ Y + +S +Q+ I +
Sbjct: 305 FVAHLNLPKSIEAYYQETGRAGRDGLPADAWMAYGLQDVITLRQMQQDSSAADQQKRIEQ 364
Query: 359 SLLAAQ-RYCLLTTCRR 374
L A C + +CRR
Sbjct: 365 QKLDAMLGLCEIISCRR 381
>gi|389842669|ref|YP_006344753.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii ES15]
gi|387853145|gb|AFK01243.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii ES15]
Length = 609
Score = 283 bits (725), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 146/337 (43%), Positives = 210/337 (62%), Gaps = 10/337 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q +I ++E RDCLVVM TG GKSLCYQ+P LV +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKTGLTIVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S Q+ +V TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLLANGVAAACLNSTQSREEQQAVLAGCRTGQVRLLYIAPER--LMMDNFIDT 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +LR VPF+ALTATA + R DI+
Sbjct: 135 LGYWDLAMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVPFMALTATADDTTRRDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLDDPLIEISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346
>gi|238922686|ref|YP_002936199.1| hypothetical protein EUBREC_0261 [Eubacterium rectale ATCC 33656]
gi|238874358|gb|ACR74065.1| hypothetical protein EUBREC_0261 [Eubacterium rectale ATCC 33656]
Length = 659
Score = 283 bits (725), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 152/386 (39%), Positives = 223/386 (57%), Gaps = 23/386 (5%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
TLK+YFGY R Q+++I I+ D L +M TG+GKSLCYQLP L+ LV+SPLI
Sbjct: 6 TLKQYFGYDSLRTGQEELINGILAGHDVLGIMPTGAGKSLCYQLPALMLKGITLVISPLI 65
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDSSVQ---TKAETGYFQLLFMTPEKACIIPISFWS 120
SLM DQV +L Q G++A ++ S+ T++ ++ + A G ++++++ PE+ + F
Sbjct: 66 SLMSDQVKALNQAGVHAAYINSSLTENQIRMALSYASQGRYKIIYVAPER--LNTPRFLD 123
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDI 179
A + + VDEAHCIS+WG DFR Y ++ T L P V A TATATE+V+ DI
Sbjct: 124 FACNADISMLTVDEAHCISQWGQDFRPSYLEIAGFLTRLPRRPIVSAFTATATERVKNDI 183
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+ SL L NP + FDR NLF+ V G + ++ + K +G I+YC T K
Sbjct: 184 VASLGLNNPVTMVTGFDRPNLFFRVVTRKGGSQKDNSIINYVKKHEDESG--IIYCATKK 241
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
+V+++ L + G+ AG YH + + R++ F D IRVMVAT AFGMGIDK +VR+
Sbjct: 242 NVDKLYTLLNEQGISAGRYHAGLSNDERKQNQEDFTYDRIRVMVATNAFGMGIDKSNVRY 301
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNF-----------AKGDFYCGESQ 348
V+HY P++LE YYQE+GR GRDG + C L++++ + + GD +
Sbjct: 302 VLHYNMPQSLEYYYQEAGRAGRDGEEAECVLFFSKQDIMINKFLLQNKASAGDVASDMQK 361
Query: 349 TENQRTAIMESLLAAQRYCLLTTCRR 374
T N R + + + YC C R
Sbjct: 362 TANDRRKLQQMI----NYCETDKCLR 383
>gi|197247389|ref|YP_002148883.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|198243255|ref|YP_002217887.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|205354483|ref|YP_002228284.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|207859158|ref|YP_002245809.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|238912961|ref|ZP_04656798.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|375121408|ref|ZP_09766575.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Dublin str. SD3246]
gi|375125367|ref|ZP_09770531.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
gi|197211092|gb|ACH48489.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197937771|gb|ACH75104.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|205274264|emb|CAR39283.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|206710961|emb|CAR35329.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|326625675|gb|EGE32020.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Dublin str. SD3246]
gi|326629617|gb|EGE35960.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
Length = 615
Score = 283 bits (725), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 221/375 (58%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+ +I + RDCLVVM TG GKSLCYQ+P L+ +VVSPLI
Sbjct: 22 VLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLI 81
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q+ V TG +LL++ PE+ ++ +F
Sbjct: 82 SLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQIRLLYIAPER--LMLDNFLD 139
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R+DII
Sbjct: 140 HLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTTRLDII 199
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 200 RLLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 254
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 255 VEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 314
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I
Sbjct: 315 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPAGQLQDIERHK 373
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 374 LNAMGAFAEAQTCRR 388
>gi|228997737|ref|ZP_04157342.1| ATP-dependent DNA helicase RecQ [Bacillus mycoides Rock3-17]
gi|229005275|ref|ZP_04162990.1| ATP-dependent DNA helicase RecQ [Bacillus mycoides Rock1-4]
gi|228755914|gb|EEM05244.1| ATP-dependent DNA helicase RecQ [Bacillus mycoides Rock1-4]
gi|228761979|gb|EEM10920.1| ATP-dependent DNA helicase RecQ [Bacillus mycoides Rock3-17]
Length = 705
Score = 283 bits (725), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 151/372 (40%), Positives = 223/372 (59%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ ++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLAGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVREDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
+L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 RALEINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNKKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E F+RDE+ VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLYKAGVSVARYHAGMNDHDRNEQQERFLRDEVSVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSECILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QHMTDYCHTEQC 373
>gi|156935855|ref|YP_001439771.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii ATCC
BAA-894]
gi|424801979|ref|ZP_18227521.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii 696]
gi|429119492|ref|ZP_19180209.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii 680]
gi|156534109|gb|ABU78935.1| hypothetical protein ESA_03738 [Cronobacter sakazakii ATCC BAA-894]
gi|423237700|emb|CCK09391.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii 696]
gi|426326019|emb|CCK10946.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii 680]
Length = 609
Score = 283 bits (725), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 146/337 (43%), Positives = 210/337 (62%), Gaps = 10/337 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q +I ++E RDCLVVM TG GKSLCYQ+P LV +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKTGLTIVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S Q+ +V TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLLANGVAAACLNSTQSREEQQAVLAGCRTGQVRLLYIAPER--LMMDNFIDT 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +LR VPF+ALTATA + R DI+
Sbjct: 135 LGYWDLAMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVPFMALTATADDTTRRDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLDDPLIEISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346
>gi|402492603|ref|ZP_10839363.1| ATP-dependent DNA helicase RecQ [Aquimarina agarilytica ZC1]
Length = 728
Score = 283 bits (725), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 154/368 (41%), Positives = 237/368 (64%), Gaps = 17/368 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LKKYFG+S FR Q+ VI+ +++K D V+M TG GKSLCYQLP L++ TA+VVSPLI+
Sbjct: 10 LKKYFGFSQFRGLQEQVIKSLLKKEDTFVIMPTGGGKSLCYQLPALMSEGTAIVVSPLIA 69
Query: 65 LMQDQVMSLK----QRGINAEFLGSA--QTD-SSVQTKAETGYFQLLFMTPEKACIIPIS 117
LM++QV +++ + GI A L S+ +TD ++V+ G +LL++ PE ++
Sbjct: 70 LMKNQVDAIRSISSENGI-AHVLNSSLNKTDVATVKADISNGITKLLYVAPE--SLVKEE 126
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKL-RTFLLGVPFVALTATATEKVR 176
+ L + AVDEAHCISEWGHDFR EY+ L ++ ++ +P + LTATAT KV+
Sbjct: 127 YAEFLASQTISFLAVDEAHCISEWGHDFRPEYRNLRRIIQSIGDNIPIIGLTATATPKVQ 186
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DI+ +L + ASF+R NLFY V+ + + ++++ + ++ +G I+YC+
Sbjct: 187 EDILKNLGISGANTFKASFNRPNLFYEVR--PKTANVETDIIRFVKQNTGKSG--IIYCL 242
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K VEE+++AL+ G+ A YH + +K R + +F+ +++ V+VAT+AFGMGIDKPD
Sbjct: 243 SRKRVEELAQALQVNGINAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGMGIDKPD 302
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD-FYCGESQTENQ-RT 354
VR V+HY PK++ESYYQE+GR GRDG C YYA + K + F G+ E +
Sbjct: 303 VRFVVHYDIPKSIESYYQETGRAGRDGGEGHCLAYYAYKDIEKLEKFMSGKPVAEQEIGN 362
Query: 355 AIMESLLA 362
A+++ ++A
Sbjct: 363 ALLQEVVA 370
>gi|291526484|emb|CBK92071.1| ATP-dependent DNA helicase, RecQ family [Eubacterium rectale DSM
17629]
Length = 659
Score = 283 bits (725), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 153/382 (40%), Positives = 224/382 (58%), Gaps = 15/382 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
TLK+YFGY R Q+++I I+ D L +M TG+GKSLCYQLP L+ LV+SPLI
Sbjct: 6 TLKQYFGYDSLRTGQEELINGILAGHDVLGIMPTGAGKSLCYQLPALMLKGITLVISPLI 65
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDSSVQ---TKAETGYFQLLFMTPEKACIIPISFWS 120
SLM DQV +L Q G++A ++ S+ T++ ++ + A G ++++++ PE+ + F
Sbjct: 66 SLMSDQVKALNQAGVHAAYINSSLTENQIRMALSYASQGRYKIIYVAPER--LNTPRFLD 123
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDI 179
A + + VDEAHCIS+WG DFR Y ++ T L P V A TATATE+V+ DI
Sbjct: 124 FACNADISMLTVDEAHCISQWGQDFRPSYLEIAGFLTRLPRRPIVSAFTATATERVKNDI 183
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+ SL L NP + FDR NLF+ V G + ++ + K +G I+YC T K
Sbjct: 184 VASLGLNNPVTMVTGFDRPNLFFRVVTRKGGSQKDNSIINYVKKHEDESG--IIYCATKK 241
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
+V+++ L + G+ AG YH + + R++ F D IRVMVAT AFGMGIDK +VR+
Sbjct: 242 NVDKLYTLLNEQGISAGRYHAGLSNDERKQNQEDFTYDRIRVMVATNAFGMGIDKSNVRY 301
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFY------CGESQTENQR 353
V+HY P++LE YYQE+GR GRDG + C L++++ + F G+ ++ Q+
Sbjct: 302 VLHYNMPQSLEYYYQEAGRAGRDGEEAECVLFFSKQDIMINKFLLQNKASAGDVASDMQK 361
Query: 354 TAIMESLLAAQ-RYCLLTTCRR 374
TA + L YC C R
Sbjct: 362 TANDQRKLQQMINYCETDKCLR 383
>gi|358410697|gb|AEU10083.1| ATP-dependent DNA helicase RecQ [Photobacterium damselae subsp.
piscicida]
Length = 613
Score = 283 bits (725), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 159/380 (41%), Positives = 228/380 (60%), Gaps = 20/380 (5%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ L+ FGY FR Q+D+I + D LV+M TG GKSLCYQ+P L+ LV+SPL
Sbjct: 17 TLLEDVFGYQQFRDGQQDIITTALNHSDSLVIMPTGGGKSLCYQIPALLLDGLTLVISPL 76
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQT---KAETGYFQLLFMTPEKACIIPISFW 119
ISLM+DQV L GI A + SA T ++T + E+G +LL+++PE+ ++ F
Sbjct: 77 ISLMKDQVDQLVANGIPAACIHSALTRDEIETVFSQLESGELKLLYVSPER--VLMRDFI 134
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
++L + + L AVDEAHCIS+WGHDFR EY +L +L+ +P +ALTATA E R DI
Sbjct: 135 ARLQQVKLALLAVDEAHCISQWGHDFRPEYAELGQLKQMFAPLPVMALTATADETTRQDI 194
Query: 180 INSLKLKNPYVTIASFDRKNLFYGV----KVINRGQSFVDELVQEILKSVAGAGSIIVYC 235
I+ L L+ PY+ + SF+R N+ Y + K +++ S+ L SV G II YC
Sbjct: 195 ISRLALEQPYIHLGSFERPNIRYTLLEKYKPLSQLLSY--------LASVRGQCGII-YC 245
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
+ K VE+I + L + G++A YH M R F RD+I ++VAT+AFGMGI+KP
Sbjct: 246 NSRKRVEQICEKLCENGLRAAAYHAGMSVNDRAYVQEAFQRDDIHIVVATVAFGMGINKP 305
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTA 355
+VR VIH+ P+ +ESYYQE+GR GRDG+ + L Y ++ A C + + +
Sbjct: 306 NVRFVIHHDIPRNIESYYQETGRAGRDGLPAEAVLLYDPADMAWLR-RCLDEKLDGATRE 364
Query: 356 IMESLLAAQR-YCLLTTCRR 374
+ E L A R + + TCRR
Sbjct: 365 VEEHKLNAMRDFAVAQTCRR 384
>gi|397655279|ref|YP_006495981.1| ATP-dependent DNA helicase RecQ [Klebsiella oxytoca E718]
gi|394344006|gb|AFN30127.1| ATP-dependent DNA helicase RecQ [Klebsiella oxytoca E718]
Length = 608
Score = 283 bits (725), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 143/337 (42%), Positives = 210/337 (62%), Gaps = 10/337 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+ +I + RDCLVVM TG GKSLCYQ+P LV G +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQETIIDTALAGRDCLVVMPTGGGKSLCYQVPALVLGGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S Q+ V +G +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLLANGVAAACLNSTQSREQQQDVMAGCRSGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +LR + +PF+ALTATA + R DI+
Sbjct: 135 LTHWNLSMVAVDEAHCISQWGHDFRPEYAALGQLRQRIPQIPFMALTATADDTTRRDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + ++SFDR N+ Y ++ +D+L++ + +G I+YC + V
Sbjct: 195 LLDLNDPLIQVSSFDRPNIRY---MLMEKFKPLDQLMRYVQDQRGKSG--IIYCNSRSKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSRGISAAAYHAGLENHIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346
>gi|24375725|ref|NP_719768.1| ATP-dependent DNA helicase RecQ [Shewanella oneidensis MR-1]
gi|24350662|gb|AAN57212.1|AE015857_5 ATP-dependent DNA helicase RecQ [Shewanella oneidensis MR-1]
Length = 607
Score = 283 bits (725), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 149/373 (39%), Positives = 224/373 (60%), Gaps = 11/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L + FGY FR Q++VI+R+ DCLV+M TG GKSLCYQLP L+ +VVSPLIS
Sbjct: 17 LAQVFGYRDFRDGQREVIERVCRGEDCLVIMPTGGGKSLCYQLPALMMHGITIVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV SL Q G+NA +L S+Q V + G +LL+++PE+ ++ F +
Sbjct: 77 LMKDQVDSLLQTGVNAAYLNSSQPRELSLEVLRQLHLGELKLLYVSPER--LLTADFIER 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
+ + +FA+DEAHCIS+WGHDFR EY L +L+ VP +ALTATA + R +I
Sbjct: 135 MQSLPLSMFAIDEAHCISQWGHDFRPEYAALGQLKQLFPHVPMMALTATADQATRQNICE 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L + NP+ ++SFDR N+ Y V + ++L Q +L+ +G I+YC + + V
Sbjct: 195 RLGI-NPFKLLSSFDRPNIRYTVA---EKLNAANQLRQFLLQQNGSSG--IIYCSSRRRV 248
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
+E+++ L G A YH M + R E F++D+I ++VAT+AFGMGI+K +VR V+
Sbjct: 249 DEVAERLTLQGFHAKAYHAGMTPEERGEVQDSFLKDQIDIVVATVAFGMGINKSNVRFVV 308
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
HY PK++E+YYQE+GR GRDG+ + ++ + ++ + +S+ Q+ L
Sbjct: 309 HYDIPKSIEAYYQETGRAGRDGLEAEAFMLFDPADIGRVRHLIEQSEPGPQQQVEFHKLN 368
Query: 362 AAQRYCLLTTCRR 374
+ TCRR
Sbjct: 369 TMAAFAEAQTCRR 381
>gi|114045876|ref|YP_736426.1| ATP-dependent DNA helicase RecQ [Shewanella sp. MR-7]
gi|113887318|gb|ABI41369.1| ATP-dependent DNA helicase RecQ [Shewanella sp. MR-7]
Length = 607
Score = 283 bits (725), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 150/373 (40%), Positives = 224/373 (60%), Gaps = 11/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L + FGY FR Q++VI+R+ DCLV+M TG GKSLCYQLP L+ +VVSPLIS
Sbjct: 17 LAQVFGYRDFRDGQREVIERVCSGEDCLVIMPTGGGKSLCYQLPALLMPGITIVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV SL Q G+NA +L S+Q V + G +LL+++PE+ ++ F +
Sbjct: 77 LMKDQVDSLLQTGVNAAYLNSSQPREQSLEVLRQLHRGELKLLYVSPER--LLTADFIER 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
+ + +FA+DEAHCIS+WGHDFR EY L +L+ VP +ALTATA + R +I
Sbjct: 135 MRSLPLSMFAIDEAHCISQWGHDFRPEYAALGQLKQLFPLVPMMALTATADQATRQNICE 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L + NP+ ++SFDR N+ Y V + ++L Q +L+ +G IVYC + + V
Sbjct: 195 RLGI-NPFKLLSSFDRPNIRYTVA---EKLNAANQLRQFLLQQNGSSG--IVYCSSRRRV 248
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
+E+++ L G A YH M + R E F++D+I ++VAT+AFGMGI+K +VR V+
Sbjct: 249 DEVAERLTLQGFHAKAYHAGMTPQERGEVQDSFLKDQIDIVVATVAFGMGINKSNVRFVV 308
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
HY PK++E+YYQE+GR GRDG+ + ++ + ++ + +S+ Q+ L
Sbjct: 309 HYDIPKSIEAYYQETGRAGRDGLEAEAFMLFDPADIGRVRHLIEQSEPGPQQQVDFHKLN 368
Query: 362 AAQRYCLLTTCRR 374
+ TCRR
Sbjct: 369 TMAAFAEAQTCRR 381
>gi|300727023|ref|ZP_07060442.1| ATP-dependent DNA helicase RecQ [Prevotella bryantii B14]
gi|299775567|gb|EFI72158.1| ATP-dependent DNA helicase RecQ [Prevotella bryantii B14]
Length = 642
Score = 283 bits (725), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 226/374 (60%), Gaps = 13/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LKKY+GY FRP Q+D+I ++ +DC V+M TG GKSLCYQ+P L TA++VSPLIS
Sbjct: 7 LKKYYGYDSFRPNQEDIINEVMAGKDCFVLMPTGGGKSLCYQIPALAMPGTAVIVSPLIS 66
Query: 65 LMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM DQV +LK GI AE L S + ++ ++ + +G +L++++PEK + I + K
Sbjct: 67 LMHDQVEALKANGIPAEALNSENNPEEETIIRRRCLSGDLKLIYVSPEK-LLSEIPYLFK 125
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
+K + LFA+DEAHCIS+WGHDFR EY L + G+P +ALTATA + R DI+
Sbjct: 126 SIK--ISLFAIDEAHCISQWGHDFRPEYANLGIIHESFPGIPVMALTATADKLTRQDIVK 183
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L N I+SFDR NL VK R + + + + + + AG I+YC++ K+
Sbjct: 184 LLHL-NGRTFISSFDRPNLSLAVKRGYRKKEKLQYISRLMQRHPGEAG--IIYCLSRKNA 240
Query: 242 EEISKALK-QLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
E++++ L G+ YH M ++ R F D+I+V+ AT+AFGMGIDK +VR V
Sbjct: 241 EKVAEELSASTGINCEAYHAGMSTQERARIQEGFKMDQIQVVCATIAFGMGIDKSNVRWV 300
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+HY PK++ES+YQE GR GRDG + L+Y+ ++ + + +S Q+ ME L
Sbjct: 301 VHYNLPKSIESFYQEIGRAGRDGAPAETVLFYSLADIIQLRKFAEDS---GQQGINMEKL 357
Query: 361 LAAQRYCLLTTCRR 374
Q Y CRR
Sbjct: 358 KRMQEYAEAQVCRR 371
>gi|356531519|ref|XP_003534325.1| PREDICTED: ATP-dependent DNA helicase Q-like 2-like [Glycine max]
Length = 695
Score = 283 bits (725), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 166/377 (44%), Positives = 228/377 (60%), Gaps = 19/377 (5%)
Query: 9 FGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQD 68
FG S +R Q+++I I+ RD LV+MA G GKSLCYQLP ++ ALVVSPL+SL+QD
Sbjct: 84 FGISSYRANQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLRDGIALVVSPLLSLIQD 143
Query: 69 QVMSLKQRGINAEFLGSAQTDSS-----VQTKAETGYFQLLFMTPEKACIIPISFWSKLL 123
QVM L GI A L S K E G ++L++TPEK F SKL
Sbjct: 144 QVMGLTALGIPAYMLTSTNKGDEKFIYKTLEKGE-GELKILYVTPEKISKSK-RFMSKLE 201
Query: 124 K---AG-VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
K AG + L ++DEAHC S+WGHDFR +YK L L+T VP VALTATAT++V+ D+
Sbjct: 202 KCHHAGRLSLISIDEAHCCSQWGHDFRPDYKSLSILKTQFPRVPIVALTATATQRVQNDL 261
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINR-GQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I L + +++ +R NLFY VK + G+ +DE+ + I +S S IVYC +
Sbjct: 262 IEMLHIPRCVKFVSTVNRPNLFYMVKEKSSVGKVVIDEIAEFIQESYPNNESGIVYCFSR 321
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K+ E+++K L++ G+ A YH M ARE+ H + ++++V+V T+AFGMGI+KPDVR
Sbjct: 322 KECEQVAKELRERGISADYYHADMDVNAREKVHMRWSNNKLQVIVGTVAFGMGINKPDVR 381
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
VIH+ K++E+YYQESGR GRDG+ S C LY F GD S + + ++
Sbjct: 382 FVIHHSLSKSMETYYQESGRAGRDGLPSECLLY-----FRPGDAPRQSSMVFYENSG-LQ 435
Query: 359 SLLAAQRYCLLT-TCRR 374
+L RYCL CRR
Sbjct: 436 NLYDIVRYCLSKRQCRR 452
>gi|70727172|ref|YP_254088.1| ATP-dependent DNA helicase [Staphylococcus haemolyticus JCSC1435]
gi|68447898|dbj|BAE05482.1| ATP-dependent DNA helicase [Staphylococcus haemolyticus JCSC1435]
Length = 592
Score = 283 bits (725), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 159/377 (42%), Positives = 222/377 (58%), Gaps = 12/377 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M +TL YFGY FRP QK++I +I++ + L V+ TG GKS+CYQ+P L+ G T +V+S
Sbjct: 1 MEATLSHYFGYDKFRPGQKEIITKIMDHHNVLGVLPTGGGKSICYQVPGLMLGGTTIVIS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV LK GI A FL S+ T ++ G+ Q L++ PE+
Sbjct: 61 PLISLMKDQVDQLKAMGIKAAFLNSSLTKKQQKEIEDDLRKGHIQFLYVAPER--FDNQY 118
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQ-LDKLRTFLLGVPFVALTATATEKVR 176
F S L + + L A DEAHCIS+WGHDFR Y+ + K+ T VALTATAT +V+
Sbjct: 119 FLSLLSRIDIHLIAFDEAHCISKWGHDFRPSYQSVIKKVFTLPQNFTIVALTATATAEVQ 178
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DI+ L + S R+NL + V + Q FV + VQ+ K AG I+YC
Sbjct: 179 QDIMEKLNIDRRDEVKTSTKRRNLIFKVNPTYQRQKFVVDYVQK-HKEQAG----IIYCS 233
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
T K VEE+ +AL + V + YH + +K RE A F+ D+++V++AT AFGMGIDK +
Sbjct: 234 TRKQVEELQEALDVINVSSAIYHAGLTNKEREAAQNEFVYDKVKVVIATNAFGMGIDKSN 293
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQT-ENQRTA 355
VR+VIHY P LESYYQE+GR GRDG+ S C L ++ + +++ SQ E+ +
Sbjct: 294 VRYVIHYNMPGDLESYYQEAGRAGRDGLESECILLFSERDKGLHEYFITVSQADEDYKDK 353
Query: 356 IMESLLAAQRYCLLTTC 372
+ E L +Y C
Sbjct: 354 MGEKLTKMIQYTKTKKC 370
>gi|228991633|ref|ZP_04151574.1| ATP-dependent DNA helicase RecQ [Bacillus pseudomycoides DSM 12442]
gi|228768071|gb|EEM16693.1| ATP-dependent DNA helicase RecQ [Bacillus pseudomycoides DSM 12442]
Length = 705
Score = 283 bits (725), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 151/372 (40%), Positives = 223/372 (59%), Gaps = 11/372 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ ++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLAGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ + + + A+ G+++LL++ PE+ + + F +
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQVREDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
+L++ + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 RTLEIDQKNTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNKKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E F+RDE+ VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLYKAGVSVARYHAGMNDHDRNEQQERFLRDEVSVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L Y+ + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSECILLYSSQDVQVQRFLIDQSTGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QHMTDYCHTEQC 373
>gi|418513709|ref|ZP_13079934.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|366081267|gb|EHN45216.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
Length = 615
Score = 283 bits (725), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 221/375 (58%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+ +I + RDCLVVM TG GKSLCYQ+P L+ +VVSPLI
Sbjct: 22 VLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLI 81
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q+ V TG +LL++ PE+ ++ +F
Sbjct: 82 SLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQVRLLYIAPER--LMLDNFLD 139
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R+DII
Sbjct: 140 HLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTTRLDII 199
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 200 RLLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 254
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 255 VEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 314
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I
Sbjct: 315 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPAGQLQDIERHK 373
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 374 LNAMGAFAEAQTCRR 388
>gi|117922195|ref|YP_871387.1| ATP-dependent DNA helicase RecQ [Shewanella sp. ANA-3]
gi|117614527|gb|ABK49981.1| ATP-dependent DNA helicase RecQ [Shewanella sp. ANA-3]
Length = 607
Score = 283 bits (725), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 151/373 (40%), Positives = 227/373 (60%), Gaps = 11/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L + FGY FR Q++VI+R+ DCLV+M TG GKSLCYQLP L+ +VVSPLIS
Sbjct: 17 LAQVFGYRDFRDGQREVIERVCSGEDCLVIMPTGGGKSLCYQLPALLMPGITIVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT-DSSVQT--KAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV SL Q G+NA +L S+Q + SV+ + G +LL+++PE+ ++ F +
Sbjct: 77 LMKDQVDSLLQTGVNAAYLNSSQPREQSVEVLRQLHRGELKLLYVSPER--LLTGDFIER 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
+ + +FA+DEAHCIS+WGHDFR EY L +L+ VP +ALTATA + R +I
Sbjct: 135 MRSLPLSMFAIDEAHCISQWGHDFRPEYAALGQLKQLFPHVPMMALTATADQATRQNICE 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L + NP+ ++SFDR N+ Y V + ++L Q +L+ +G IVYC + + V
Sbjct: 195 RLGI-NPFRLLSSFDRPNIRYTVA---EKLNAANQLRQFLLQQNGSSG--IVYCSSRRRV 248
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
+E+++ L G A YH M + R E F++D+I ++VAT+AFGMGI+K +VR V+
Sbjct: 249 DEVAERLILQGFHAKAYHAGMTPQERGEVQDSFLKDQIDIVVATVAFGMGINKSNVRFVV 308
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
HY PK++E+YYQE+GR GRDG+ + ++ + ++ + +S+ Q+ L
Sbjct: 309 HYDIPKSIEAYYQETGRAGRDGLEAEAFMLFDPADIGRVRHLIEQSEPGPQQQVDFHKLN 368
Query: 362 AAQRYCLLTTCRR 374
+ TCRR
Sbjct: 369 TMAAFAEAQTCRR 381
>gi|423126736|ref|ZP_17114415.1| ATP-dependent DNA helicase recQ [Klebsiella oxytoca 10-5250]
gi|376396730|gb|EHT09369.1| ATP-dependent DNA helicase recQ [Klebsiella oxytoca 10-5250]
Length = 608
Score = 283 bits (725), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 143/337 (42%), Positives = 210/337 (62%), Gaps = 10/337 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+ +I + RDCLVVM TG GKSLCYQ+P LV G +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQETIIDTALAGRDCLVVMPTGGGKSLCYQVPALVLGGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S Q+ V +G +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLLANGVAAACLNSTQSREQQQDVMAGCRSGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +LR + +PF+ALTATA + R DI+
Sbjct: 135 LTHWNLSMVAVDEAHCISQWGHDFRPEYAALGQLRQRIPHIPFMALTATADDTTRRDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + ++SFDR N+ Y ++ +D+L++ + +G I+YC + V
Sbjct: 195 LLDLNDPLIQVSSFDRPNIRY---MLMEKFKPLDQLMRYVQDQRGKSG--IIYCNSRSKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSRGISAAAYHAGLENHIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346
>gi|451820169|ref|YP_007456370.1| putative ATP-dependent DNA helicase RecQ [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451786148|gb|AGF57116.1| putative ATP-dependent DNA helicase RecQ [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 818
Score = 283 bits (725), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 147/333 (44%), Positives = 204/333 (61%), Gaps = 11/333 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+KY+GY FR Q+D+I +II D L +M TG GKS+CYQ+P L+ +V+SPLIS
Sbjct: 11 LEKYYGYKTFRKGQEDIINKIINGEDVLAIMPTGGGKSICYQIPALILEGITVVISPLIS 70
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +LK GIN + S + ++ V + + G ++L++ PE+ + F +
Sbjct: 71 LMKDQVDTLKDMGINGALINSTLSSVEENQVIEQLQDGEIKILYIAPER--LESFEFLNV 128
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
+ K + AVDEAHCIS+WGHDFR Y+++ L P V A TATA+E+VR DII
Sbjct: 129 ISKCCISQIAVDEAHCISQWGHDFRSSYRKISDFINLLQNRPIVTAFTATASEEVREDII 188
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N LKLKNP V I FDR+NL V + ++ + + E K V+G I+Y T K+
Sbjct: 189 NLLKLKNPKVFITGFDRENLLINVVKNGNKKEYLFKYI-ENNKEVSG----IIYAATRKE 243
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+ + + L G K YH + R+E FI D+ +MVAT AFGMGIDKP++R+V
Sbjct: 244 VDLVYEMLNAKGYKVAHYHAGLSENTRKENQENFIYDQANIMVATNAFGMGIDKPNIRYV 303
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYA 333
+HY PK +ESYYQE GR GRDG S C L ++
Sbjct: 304 VHYNMPKNIESYYQEIGRAGRDGGESECILLFS 336
>gi|417321543|ref|ZP_12108080.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus 10329]
gi|328471322|gb|EGF42221.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus 10329]
Length = 611
Score = 283 bits (725), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 148/373 (39%), Positives = 221/373 (59%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FR Q++VI+ +E +D LV+M TG GKSLCYQ+P LV LV+SPLIS
Sbjct: 20 LEEVFGYQTFRDGQQEVIESAVEGKDSLVIMPTGGGKSLCYQIPALVRSGITLVISPLIS 79
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV LK G+ AE + S + SV + +G +L++++PE+ ++ F +
Sbjct: 80 LMKDQVDQLKANGVAAECVNSTMSREELLSVYNRMHSGQLKLVYVSPER--VLMRDFIER 137
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +L+ VPF+ALTATA + R DI+
Sbjct: 138 LENLPLAMIAVDEAHCISQWGHDFRPEYAALGQLKQHFSHVPFMALTATADDATRRDILE 197
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L+L P+V + SFDR N+ Y + ++ V ++++ + G I+YC + K V
Sbjct: 198 RLRLHEPHVHLGSFDRPNIRYNLVEKHKP---VSQIIRYLDTQKGNCG--IIYCGSRKKV 252
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E +++ L ++A YH M + R F RD+I+++VAT+AFGMGI+KP+VR V+
Sbjct: 253 EMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRFVV 312
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + + Y ++ + E Q+ L
Sbjct: 313 HFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGPQKQVESHKLN 372
Query: 362 AAQRYCLLTTCRR 374
A + TCRR
Sbjct: 373 AMSAFAEAQTCRR 385
>gi|375258339|ref|YP_005017509.1| ATP-dependent DNA helicase RecQ [Klebsiella oxytoca KCTC 1686]
gi|402839822|ref|ZP_10888300.1| ATP-dependent DNA helicase RecQ [Klebsiella sp. OBRC7]
gi|423105828|ref|ZP_17093529.1| ATP-dependent DNA helicase recQ [Klebsiella oxytoca 10-5242]
gi|365907817|gb|AEX03270.1| ATP-dependent DNA helicase RecQ [Klebsiella oxytoca KCTC 1686]
gi|376379689|gb|EHS92440.1| ATP-dependent DNA helicase recQ [Klebsiella oxytoca 10-5242]
gi|402287439|gb|EJU35887.1| ATP-dependent DNA helicase RecQ [Klebsiella sp. OBRC7]
Length = 608
Score = 283 bits (725), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 143/337 (42%), Positives = 210/337 (62%), Gaps = 10/337 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+ +I + RDCLVVM TG GKSLCYQ+P LV G +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQETIIDTALAGRDCLVVMPTGGGKSLCYQVPALVLGGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S Q+ V +G +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLLANGVAAACLNSTQSREQQQEVMAGCRSGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +LR + +PF+ALTATA + R DI+
Sbjct: 135 LTHWNLSMVAVDEAHCISQWGHDFRPEYAALGQLRQRIPQIPFMALTATADDTTRRDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + ++SFDR N+ Y ++ +D+L++ + +G I+YC + V
Sbjct: 195 LLDLNDPLIQVSSFDRPNIRY---MLMEKFKPLDQLMRYVQDQRGKSG--IIYCNSRSKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSRGISAAAYHAGLENHIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346
>gi|417542867|ref|ZP_12194198.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Wandsworth str. A4-580]
gi|353657835|gb|EHC98179.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Wandsworth str. A4-580]
Length = 609
Score = 283 bits (725), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 221/375 (58%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+ +I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLI
Sbjct: 16 VLQETFGYQQFRPGQEAIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLI 75
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q+ V TG +LL++ PE+ ++ +F
Sbjct: 76 SLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQIRLLYIAPER--LMLDNFLD 133
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DII
Sbjct: 134 HLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTTRQDII 193
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 194 RLLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 248
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 249 VEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 308
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I
Sbjct: 309 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPAGQLQDIERHK 367
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 368 LNAMGAFAEAQTCRR 382
>gi|166240117|ref|XP_001732947.1| ATP-dependent DNA helicase RecQ family protein [Dictyostelium
discoideum AX4]
gi|165988751|gb|EDR41122.1| ATP-dependent DNA helicase RecQ family protein [Dictyostelium
discoideum AX4]
Length = 1136
Score = 283 bits (725), Expect = 8e-74, Method: Composition-based stats.
Identities = 148/360 (41%), Positives = 223/360 (61%), Gaps = 8/360 (2%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ LKKYFG FRP Q +VI+ I D + MATG+GKSLC+Q+PPL KTA+VVS
Sbjct: 289 IIEILKKYFGLHSFRPNQLEVIKHTISGGDSFLSMATGTGKSLCFQIPPLYLNKTAIVVS 348
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTK-AETGYFQLLFMTPEKACIIPISFW 119
PL+SL+ DQ + LK GI L S SS + + GY+ L+++TPE+ S
Sbjct: 349 PLVSLITDQTLKLKSLGIKVTKLSSDIKSSSKEYELIFKGYYNLVYITPERIINEYQSIG 408
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+ +CLFA+DEAHCIS+WGH FR Y++L +LR VP +A+TATAT+ + DI
Sbjct: 409 ELVRNEKICLFAIDEAHCISQWGHSFRESYRKLQELRNQFPTVPIMAVTATATKSIESDI 468
Query: 180 INSLKLKNPYVTI--ASFDRKNLFYGV----KVINRGQSFVDELVQEILKSVAG-AGSII 232
IN+L + N + +S +R N++Y V K+++ + +++ E K++ + S I
Sbjct: 469 INNLGIGNGNCKMFKSSKNRPNIYYKVIIKDKLVSNDFKMILDILLETRKTIGVVSNSTI 528
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
+YC TI+ E+++ L +++ YH Q+G K R+E + F+ ++ V+VAT+AFGMGI
Sbjct: 529 IYCTTIQIANELNRFLCDNKIQSNVYHSQLGDKQRDETLKNFLFNKTEVIVATIAFGMGI 588
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ 352
DK DVR +I+YG K++E +YQESGR GRDG+ S+ + Y+ +F K F + N+
Sbjct: 589 DKHDVRLIINYGASKSVEDFYQESGRAGRDGLQSLSLIIYSLQDFVKSSFLLRNNNNYNK 648
>gi|90414260|ref|ZP_01222240.1| putative ATP-dependent DNA helicase RecQ [Photobacterium profundum
3TCK]
gi|90324707|gb|EAS41248.1| putative ATP-dependent DNA helicase RecQ [Photobacterium profundum
3TCK]
Length = 615
Score = 283 bits (725), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 150/373 (40%), Positives = 217/373 (58%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FR Q++VI+ +IE +DCLV+M TG GKSLCYQ+P L+ LV+SPLIS
Sbjct: 21 LQDVFGYQSFRIGQQEVIEAVIEGQDCLVIMPTGGGKSLCYQIPALIMPGITLVISPLIS 80
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A ++ S + V G +L++++PE+ ++ F +
Sbjct: 81 LMKDQVDQLNANGVAAAYINSTMSREEVMETFLAMREGDLKLVYVSPER--VLMRDFIER 138
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + + AVDEAHC+S+WGHDFR EY L L+ +P +ALTATA + R DI +
Sbjct: 139 LYETPLSMVAVDEAHCVSQWGHDFRPEYAALGTLKQHFENLPIMALTATADDTTRNDITS 198
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L NP+ + SFDR N+ Y ++ + + + L V G I VYC + K V
Sbjct: 199 RLGLTNPHAYLGSFDRPNIRY--TLLEKHKPMTQ--LTRYLTGVRGQCGI-VYCNSRKRV 253
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+I++ L+ GV+A YH + R F RD+I ++VAT+AFGMGI+KP+VR V+
Sbjct: 254 EQIAEKLRDSGVRAAAYHAGLDHDERGRVQESFQRDDIHIVVATVAFGMGINKPNVRFVV 313
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
HY P+ +ESYYQE+GR GRDG+ + ++Y S+ A E + Q+ L
Sbjct: 314 HYDIPRNIESYYQETGRAGRDGLPAEAVMFYDPSDLAWLRRCLDEKEDGAQKQVESHKLN 373
Query: 362 AAQRYCLLTTCRR 374
A + TCRR
Sbjct: 374 AMGAFAEAQTCRR 386
>gi|152978031|ref|YP_001343660.1| ATP-dependent DNA helicase RecQ [Actinobacillus succinogenes 130Z]
gi|150839754|gb|ABR73725.1| ATP-dependent DNA helicase RecQ [Actinobacillus succinogenes 130Z]
Length = 614
Score = 283 bits (725), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 159/373 (42%), Positives = 223/373 (59%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK+ FGY FR Q++ I ++ +D LVVMATG+GKSLCYQLP L LV+SPLIS
Sbjct: 14 LKEVFGYQAFRLGQEEAINAALQGQDSLVVMATGNGKSLCYQLPALCFPGLTLVISPLIS 73
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L GI A++L S QT VQ KA +G +LL+++PEK ++ SF+S
Sbjct: 74 LMKDQVDQLLANGIEADYLNSTQTFEQQQQVQNKAISGQLKLLYLSPEK--VMTNSFFSF 131
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
+ V A+DEAHCIS+WGHDFR EY QL L+ P +ALTATA R DI+
Sbjct: 132 ISLCQVSFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATADSTTRQDILQ 191
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
+L+L P++ + SFDR N+ Y ++ + + V++L ++ +G IVYC +
Sbjct: 192 NLRLNRPHLYVGSFDRPNIRY--TLVEKFKP-VEQLCNFVVAQKGKSG--IVYCNSRNKS 246
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E++++ALK+ GV A YH M RE R F D I+V+VAT+AFGMGI+K +VR V
Sbjct: 247 EKVTEALKKRGVSAEFYHAGMDVTERERVQRAFQHDNIQVVVATIAFGMGINKSNVRFVA 306
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ +++E+YYQE+GR GRD + + L+Y S++ E QR + L
Sbjct: 307 HFDLSRSIEAYYQETGRAGRDDLPAEAVLFYEPSDYGWLHKILMEEPESPQRDIKLHKLE 366
Query: 362 AAQRYCLLTTCRR 374
A + TCRR
Sbjct: 367 AIGEFAESQTCRR 379
>gi|189345599|ref|YP_001942128.1| ATP-dependent DNA helicase RecQ [Chlorobium limicola DSM 245]
gi|189339746|gb|ACD89149.1| ATP-dependent DNA helicase RecQ [Chlorobium limicola DSM 245]
Length = 615
Score = 283 bits (725), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 152/377 (40%), Positives = 220/377 (58%), Gaps = 10/377 (2%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ TL+K FG+ FRP Q+ +++ I+ KRD VM TG GKSLCYQLP ++ T +V+S
Sbjct: 10 LFDTLRKVFGFREFRPNQERIVRAILNKRDVFAVMPTGGGKSLCYQLPAVLLPGTCMVIS 69
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPIS 117
PLI+LM+DQV + GI A L S+ + ++V + LL++ PE+ +
Sbjct: 70 PLIALMKDQVDGARANGIRAAHLNSSLCPEERTAVMHDLLSNSLDLLYVAPERFTLE--Q 127
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
F L + + + +DEAHCISEWGHDFR +Y L L T +P A TATAT V+
Sbjct: 128 FREMLGRVNISMAVIDEAHCISEWGHDFRPDYLSLSALVTLFPDLPVTAFTATATHLVQQ 187
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI++ L L++P V ASFDR NLFY + R + E + I++S G II Y +
Sbjct: 188 DILDKLSLRDPLVVRASFDRGNLFYDI----RFKENSGEQIAAIVRSNQGKAGII-YRTS 242
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K+V + + LK G +A YH +G + R+ FIRDE V+VAT+AFGMGIDK ++
Sbjct: 243 RKNVNDTTAMLKAKGFRALPYHAGLGDEERKRNQDAFIRDEADVIVATVAFGMGIDKSNI 302
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIH PK++E+YYQE+GR GRDG A+ C L +++ + K F+ E +R ++
Sbjct: 303 RFVIHADLPKSIENYYQETGRAGRDGEAAQCTLLFSQGDIPKVRFFIDTITDEAERARVL 362
Query: 358 ESLLAAQRYCLLTTCRR 374
+ + + CRR
Sbjct: 363 AAFSKVIAFASTSVCRR 379
>gi|253702373|ref|YP_003023562.1| ATP-dependent DNA helicase RecQ [Geobacter sp. M21]
gi|251777223|gb|ACT19804.1| ATP-dependent DNA helicase RecQ [Geobacter sp. M21]
Length = 599
Score = 283 bits (725), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 151/376 (40%), Positives = 219/376 (58%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L FG+ FR Q ++++ ++ RD V+M TG GKSLCYQ+P L TALVVSP
Sbjct: 6 IQILNDVFGFKSFRSPQHEIVETVLSGRDAFVLMPTGGGKSLCYQIPALCFPGTALVVSP 65
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV +L++ GI+A SA ++ V + G +LL++ PE+ ++ F
Sbjct: 66 LISLMKDQVDALRENGISAACYNSALGEAEARRVLAQLHAGELKLLYVAPER--LLSDGF 123
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
++ + LFA+DEAHC+S+WGHDFR EY QL LR +P +ALTATA + R D
Sbjct: 124 LERIKPLSISLFAIDEAHCVSQWGHDFRPEYAQLGVLREIFPEIPMIALTATADAQTRGD 183
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I++ L L+ A FDR N+ Y VI++ + F ++L + AG IVY ++
Sbjct: 184 ILSRLGLQGATCYCAGFDRPNIRY--SVIDKNKPF-NQLTGFLSSRKDEAG--IVYALSR 238
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K VEE+++ L G+KA YH + K R F++D+I+++VAT+AFGMGIDK +VR
Sbjct: 239 KRVEEVARKLCAAGIKAAAYHAGLPDKERHRVQEAFLKDDIKIVVATVAFGMGIDKSNVR 298
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+HY PK++ESYYQE+GR GRDG+ + L + + A G Q +
Sbjct: 299 FVVHYDMPKSIESYYQETGRAGRDGLPADALLLFGYGDVAVARGLIGNGGNAEQNRIELH 358
Query: 359 SLLAAQRYCLLTTCRR 374
L + TCRR
Sbjct: 359 KLNCMTGFAEAQTCRR 374
>gi|352085481|ref|ZP_08953101.1| ATP-dependent DNA helicase RecQ [Rhodanobacter sp. 2APBS1]
gi|351681902|gb|EHA65016.1| ATP-dependent DNA helicase RecQ [Rhodanobacter sp. 2APBS1]
Length = 612
Score = 283 bits (724), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 152/377 (40%), Positives = 225/377 (59%), Gaps = 17/377 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FR Q+ V++ + E D LV+M TG GKSLCYQ+P L+ T +VVSPLI+
Sbjct: 12 LQSVFGYPSFRGQQQAVVEHLGEGGDALVLMPTGGGKSLCYQIPALLRQGTGIVVSPLIA 71
Query: 65 LMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV +L++ G+ A +L S A+ V+ + G LL++ PE+ ++ F
Sbjct: 72 LMQDQVDALREAGVAAAYLNSSLSAEAQREVERQLLAGELNLLYVAPER--LLTPRFLGL 129
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L V LFA+DEAHC+S+WGHDFR EY++L L P +ALTATA + R +I+
Sbjct: 130 LESIEVALFAIDEAHCVSQWGHDFRPEYRELAILHQRFPHAPRIALTATADPRTREEIVE 189
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L++ ++SFDR N+ Y V + + + + E +Q S IVYC++ + V
Sbjct: 190 RLSLQHARQFVSSFDRPNIGYRVGLRHNAKRQLTEFLQGHQGE-----SGIVYCLSRRKV 244
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
++ + L + GV+A YH + + R + + F+R++ VMVAT+AFGMGIDKPDVR V
Sbjct: 245 DDTAAWLAESGVEALPYHAGLDAATRAKNQQRFLREDGVVMVATVAFGMGIDKPDVRFVA 304
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI----M 357
H P+++E YYQE+GR GRDG+ + W+ Y S+ +S++ ++R + +
Sbjct: 305 HLDLPRSIEGYYQETGRAGRDGLPAEAWMIYGLSDVVTMSQMIAQSESADERKRVERQKL 364
Query: 358 ESLLAAQRYCLLTTCRR 374
ESLLA Y T CRR
Sbjct: 365 ESLLA---YAEATGCRR 378
>gi|424030704|ref|ZP_17770183.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HENC-01]
gi|408881586|gb|EKM20462.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HENC-01]
Length = 611
Score = 283 bits (724), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 152/373 (40%), Positives = 218/373 (58%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FR Q+ VI +E RD LV++ TG GKSLCYQ+P LV LV+SPLIS
Sbjct: 20 LEDVFGYQEFRDGQQLVIDAAVEGRDSLVILPTGGGKSLCYQIPALVRSGITLVISPLIS 79
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV LK G+ AE + S SV + TG+ +L++++PE+ ++ F +
Sbjct: 80 LMKDQVDQLKANGVAAECINSTMPREELLSVYNRMHTGHLKLVYVSPER--VLMRDFIER 137
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +L+ VPF+ALTATA + R DI+
Sbjct: 138 LENLPLSMIAVDEAHCISQWGHDFRPEYAALGQLKQQFSHVPFMALTATADDATRRDILE 197
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L+L NP V + SFDR N+ Y + ++ V ++V+ + G I+YC + K V
Sbjct: 198 RLQLNNPEVYLGSFDRPNIRYNLVEKHKP---VSQIVRYLETQKGNCG--IIYCGSRKKV 252
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E +++ L ++A YH M + R F RD+I+++VAT+AFGMGI+KP+VR V+
Sbjct: 253 EMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRFVV 312
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + + Y +N + E Q+ L
Sbjct: 313 HFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPANISWLRRMLDEKDDGPQKQVETHKLN 372
Query: 362 AAQRYCLLTTCRR 374
A + TCRR
Sbjct: 373 AMSAFAEAQTCRR 385
>gi|197265653|ref|ZP_03165727.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197243908|gb|EDY26528.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
Length = 615
Score = 283 bits (724), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 221/375 (58%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+ +I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLI
Sbjct: 22 VLQETFGYQQFRPGQEAIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLI 81
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q+ V TG +LL++ PE+ ++ +F
Sbjct: 82 SLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQIRLLYIAPER--LMLDNFLD 139
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DII
Sbjct: 140 HLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTTRQDII 199
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 200 RLLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 254
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 255 VEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 314
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I
Sbjct: 315 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPAGQLQDIERHK 373
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 374 LNAMGAFAEAQTCRR 388
>gi|221134099|ref|ZP_03560404.1| ATP-dependent DNA helicase [Glaciecola sp. HTCC2999]
Length = 596
Score = 283 bits (724), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 157/378 (41%), Positives = 229/378 (60%), Gaps = 18/378 (4%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+TLK FGYS FR Q+ +I+ + ++DCLV+M TG GKSLCYQ+P ++ +VVSPL
Sbjct: 8 TTLKNTFGYSDFRKGQQAIIEASLAQQDCLVLMPTGGGKSLCYQVPAVINTGLTIVVSPL 67
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTD----SSVQTKAETGYFQLLFMTPEKACIIPISF 118
ISLMQDQ+ GI A+ + S+Q D + V + G +LF+ PE+ I+ F
Sbjct: 68 ISLMQDQMEQCLAVGIRADMI-SSQLDGAEITQVYQRLHNGQTDILFVAPER--ILQPYF 124
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+L + + L AVDEAHC+S WGHDFR +Y+ L +LR +P +ALTATA R D
Sbjct: 125 IERLSELDISLIAVDEAHCVSHWGHDFRQDYRNLGQLRQIFPYIPIMALTATADIATRED 184
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSV-AGAGSIIVYCMT 237
I L L +P+V +ASFDR N+ Y VI + + +++I++ + A GS I+YC +
Sbjct: 185 IQTQLHLNHPHVHLASFDRPNIRY--TVIPKFKP-----LEQIVRFIHAHEGSGIIYCSS 237
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
V+E+ L G K G YH + + R +A R F D I +MVAT+AFGMGI+K +V
Sbjct: 238 RNKVDEVRNKLYAKGFKCGAYHAGLTQEERAQAQRDFQNDNIDIMVATVAFGMGINKSNV 297
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI- 356
R+V+H+ P+++E+YYQE+GR GRDG+AS L + + A+ + S E+ R +
Sbjct: 298 RYVVHHDLPRSIEAYYQETGRAGRDGLASEALLLFDEKDAARIKQWIESS--ESHRIEVE 355
Query: 357 MESLLAAQRYCLLTTCRR 374
+E A +R+ TCRR
Sbjct: 356 LEKFEAMERFGDAQTCRR 373
>gi|383192105|ref|YP_005202233.1| ATP-dependent DNA helicase RecQ [Rahnella aquatilis CIP 78.65 =
ATCC 33071]
gi|371590363|gb|AEX54093.1| ATP-dependent DNA helicase RecQ [Rahnella aquatilis CIP 78.65 =
ATCC 33071]
Length = 610
Score = 283 bits (724), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 152/373 (40%), Positives = 217/373 (58%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FRP Q+ +I I RDCLVVM TG GKSLCYQ+P LV LVVSPLIS
Sbjct: 17 LRDTFGYQQFRPGQQTIINTAISGRDCLVVMPTGGGKSLCYQIPALVMDGLTLVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S QT V G ++L++ PE+ ++ F +
Sbjct: 77 LMKDQVDQLMAAGVEAGCLNSTQTREQQLDVMAGCRAGRIKMLYIAPER--LMMGDFLEQ 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY+ L +L+ +P +ALTATA E R DI+
Sbjct: 135 LQQWNPAMLAVDEAHCISQWGHDFRPEYRALGQLKLRYPQLPVIALTATADEATRNDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L+L +P + ++SFDR N+ Y ++ + + D+L++ + +G I+YC + V
Sbjct: 195 LLELNDPLIQVSSFDRPNIRY--TLVEKFKPL-DQLIRFVQDQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ G YH + + R F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSRGLSVGAYHAGLDNDTRARVQEGFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+T+ESYYQE+GR GRDG+ + L Y ++ A E Q+ L
Sbjct: 310 HFDIPRTIESYYQETGRAGRDGLPAEAVLLYDPADMAWLRRCLEEKPAGAQQDVERHKLN 369
Query: 362 AAQRYCLLTTCRR 374
A + TCRR
Sbjct: 370 AMNAFAEAQTCRR 382
>gi|344345505|ref|ZP_08776355.1| ATP-dependent DNA helicase RecQ [Marichromatium purpuratum 984]
gi|343802948|gb|EGV20864.1| ATP-dependent DNA helicase RecQ [Marichromatium purpuratum 984]
Length = 523
Score = 283 bits (724), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 158/380 (41%), Positives = 221/380 (58%), Gaps = 16/380 (4%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L + FGY FR Q +I R+++ D LV+M TG GKSLCYQ+P L+ TA+VVSP
Sbjct: 6 LQILNRVFGYERFRGDQAKIIDRLLDGDDALVLMPTGGGKSLCYQIPALLRPGTAIVVSP 65
Query: 62 LISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LI+LMQDQV +L+Q G+ A +L S+ + V+ G LL++ PE+ ++ F
Sbjct: 66 LIALMQDQVDALRQLGVAAAYLNSSLDPEAAQDVEQALRAGTLDLLYVAPER--LLTERF 123
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ L +A + LFA+DEAHC+S+WGHDFR EY QL L VP +ALTATA R +
Sbjct: 124 LALLGEARIALFAIDEAHCVSQWGHDFRPEYIQLGLLHARWPEVPRIALTATADAPTRAE 183
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRG---QSFVDELVQEILKSVAGAGSIIVYC 235
I++ L L+ + ++SFDR N+ Y +V+ + Q +D L +E + IVYC
Sbjct: 184 IVSRLGLERAHQFVSSFDRPNIRY--RVVEKASPRQQLLDFLRREHPQDAG-----IVYC 236
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
++ K VEE + L G A YH + ++ R F+RDE VMVAT+AFGMGIDKP
Sbjct: 237 LSRKRVEETAAFLAAEGFTALPYHAGLAAEQRRAHQARFLRDEGVVMVATIAFGMGIDKP 296
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTA 355
DVR V H PK+LESYYQE+GR GRDG+ + W+ Y + +S+ + +
Sbjct: 297 DVRFVAHLDLPKSLESYYQETGRAGRDGLPADAWMTYGIGDLVTLRRIIEDSEADERFKR 356
Query: 356 I-MESLLAAQRYCLLTTCRR 374
I + L YC CRR
Sbjct: 357 IERQKLDGMLGYCETIACRR 376
>gi|311746386|ref|ZP_07720171.1| ATP-dependent DNA helicase RecQ [Algoriphagus sp. PR1]
gi|126575272|gb|EAZ79604.1| ATP-dependent DNA helicase RecQ [Algoriphagus sp. PR1]
Length = 725
Score = 283 bits (724), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 160/378 (42%), Positives = 233/378 (61%), Gaps = 18/378 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LKK FG+S FR Q+ ++ ++ R+ V+M TG+GKSLCYQLP +V+ TA+V+SPLI+
Sbjct: 9 LKKIFGFSQFRGNQEPIVDNLLGHRNTFVIMPTGAGKSLCYQLPAVVSNGTAIVISPLIA 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS-SVQTKAE--TGYFQLLFMTPEKACIIPISFWSK 121
LM++QV LK GINA FL S S S + K E + +LL++ PE + +
Sbjct: 69 LMKNQVDQLKAIGINAHFLNSTLNKSESTKVKNEVLSKKTKLLYVAPE--SLTKEENIAF 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLL----GVPFVALTATATEKVRI 177
L A + A+DEAHCISEWGHDFR EY+ K++T + +P +ALTATAT KV+
Sbjct: 127 LKSAELSFVAIDEAHCISEWGHDFRPEYR---KIKTIVAQIAPNLPIIALTATATPKVQQ 183
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI +L+++ + +SF+R NLFY V+ + +S +L++ I +G I+YC++
Sbjct: 184 DIQRNLQMEEADLFKSSFNRTNLFYEVRPKMKNES-KKQLIKFIKNHKGKSG--IIYCLS 240
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K VEEI++ L+ + A YH + S R + F+ +E+ V+VAT+AFGMGIDKPDV
Sbjct: 241 RKKVEEIAQLLQVNQINAAPYHAGLDSAIRIKNQDDFLNEELDVIVATIAFGMGIDKPDV 300
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD-FYCGESQTENQRTAI 356
R+VIHY PK+LE YYQE+GR GRDG+ C ++Y + K + F + TE + +
Sbjct: 301 RYVIHYDVPKSLEGYYQETGRAGRDGLEGHCLMFYRYEDIVKLEKFNKDKPVTERENARV 360
Query: 357 MESLLAAQRYCLLTTCRR 374
+ +AA Y CRR
Sbjct: 361 LLHEMAA--YAETGVCRR 376
>gi|187930372|ref|YP_001900859.1| ATP-dependent DNA helicase RecQ [Ralstonia pickettii 12J]
gi|187727262|gb|ACD28427.1| ATP-dependent DNA helicase RecQ [Ralstonia pickettii 12J]
Length = 637
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 161/385 (41%), Positives = 222/385 (57%), Gaps = 20/385 (5%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGK----TALV 58
+ L FGYS FR Q +++ + + DCLV+M TG GKSLCYQ+P LV + +V
Sbjct: 24 AVLHDVFGYSAFRGPQAEIVAHVADGGDCLVLMPTGGGKSLCYQIPALVRHRRGQGAGIV 83
Query: 59 VSPLISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIP 115
VSPLI+LMQDQV +L++ G+ A +L SA T + V+ G L+++ PE+ ++
Sbjct: 84 VSPLIALMQDQVAALEEAGVRAAYLNSALTGAEAAQVERDLAAGRLDLVYVAPER--LMT 141
Query: 116 ISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
F L ++ + LFA+DEAHC+S+WGHDFR EY QL L VP +ALTATA
Sbjct: 142 PRFLELLERSRIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPHVPRIALTATADAVT 201
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGV--KVINRGQSFVDELVQEILKSVAGAGSIIV 233
R +II L L V ++SFDR N+ Y + K R Q + + AG IV
Sbjct: 202 RDEIIERLALTGSRVFLSSFDRPNIRYTIVEKDSARQQLLRFIRAEHMDGDTCDAG--IV 259
Query: 234 YCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGID 293
YC++ K VEE ++ L + G++A YH M S R +F ++E VMVAT+AFGMGID
Sbjct: 260 YCLSRKKVEETAQWLAEQGIRALPYHAGMDSDVRARHQAIFRKEEGVVMVATIAFGMGID 319
Query: 294 KPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQR 353
KPDVR V H PK+LE YYQE+GR GRDG+ + W+ Y ++ + ES ++
Sbjct: 320 KPDVRFVAHLDLPKSLEGYYQETGRAGRDGMPANAWMAYGLADVVQQRRMIDESDADDVH 379
Query: 354 ----TAIMESLLAAQRYCLLTTCRR 374
TA +E+LL C TCRR
Sbjct: 380 KRVSTAKLEALLG---LCEAATCRR 401
>gi|424790625|ref|ZP_18217151.1| DNA helicase [Xanthomonas translucens pv. graminis ART-Xtg29]
gi|422797927|gb|EKU26107.1| DNA helicase [Xanthomonas translucens pv. graminis ART-Xtg29]
Length = 602
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 160/383 (41%), Positives = 227/383 (59%), Gaps = 25/383 (6%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
S L + FGY FR Q+D+++ + +D LV+M TG GKSLCYQ+P L+ T +V+SPL
Sbjct: 7 SVLGRVFGYDQFRGPQQDIVEHVAAGQDALVLMPTGGGKSLCYQIPSLLRDGTGIVISPL 66
Query: 63 ISLMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
I+LMQDQV +L+Q G+ AE+L S A+T V+ + G LL++ PE+ ++ F
Sbjct: 67 IALMQDQVEALRQLGVRAEYLNSTLDAETAQRVERELLAGELDLLYVAPER--LLTPRFL 124
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
S L ++ + LFA+DEAHC+S+WGHDFR EY+QL L +P +ALTATA + +I
Sbjct: 125 SLLERSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWPQIPRIALTATADPPTQREI 184
Query: 180 INSLKLKNPYVTIASFDRKNLFYGV-KVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
L L ++SFDR N+ Y V + N + +D L++ G+ I VYCM+
Sbjct: 185 AERLDLTQARHFVSSFDRPNIRYTVVQKDNSKRQLLD-----FLRAHRGSAGI-VYCMSR 238
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
+ VEE ++ L + G+ A YH + ++ R R F+R++ VM AT+AFGMGIDKPDVR
Sbjct: 239 RKVEETAEFLAKEGLNALPYHAGLPAEVRAGNQRRFLREDGIVMCATIAFGMGIDKPDVR 298
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYA-------RSNFAKGDFYCGESQTEN 351
V H PK+LE YYQE+GR GRDG A+ WL Y + KG+ GE +
Sbjct: 299 FVAHTDLPKSLEGYYQETGRAGRDGEAAEAWLCYGLGDVVLLKQMIEKGE--AGEDRKRV 356
Query: 352 QRTAIMESLLAAQRYCLLTTCRR 374
+R ++ LL YC CRR
Sbjct: 357 ERRK-LDQLLG---YCESMQCRR 375
>gi|456985305|gb|EMG21152.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
serovar Copenhageni str. LT2050]
Length = 550
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 161/380 (42%), Positives = 226/380 (59%), Gaps = 15/380 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKT-ALVVSPL 62
TLKK +G S FR QK+ I+ ++ +D L ++ TG GKSL YQ P ++ + LV+SPL
Sbjct: 22 TLKKKWGLSKFRSGQKNAIESLMAGKDTLAILPTGGGKSLIYQFPAVLDETSLTLVISPL 81
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFW 119
I+LM+DQV SLK +GI AE+ S Q D + ++A TG ++L+++PEKA +
Sbjct: 82 IALMKDQVDSLKAKGIAAEYCNSTQDDLEQLRILSRAVTGKIRILYLSPEKA--LGRQVL 139
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR-TFLLGVPFVALTATATEKVRID 178
L K + AVDEAHC+S+WGHDFR EY+++ +LR + +P +ALTATAT +V D
Sbjct: 140 EILPKFPLARIAVDEAHCVSQWGHDFRPEYRKIHELREKYPKSIPVIALTATATSRVIKD 199
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKV----INRGQSFVDELVQEILKSVAGAGSIIVY 234
I +SL LKNP + SF R+NL + V+ I+R + L Q + ++ +G IVY
Sbjct: 200 ISDSLGLKNPILIKGSFYRENLSFSVRFPQNEISRENELLKLLAQGNFQKIS-SGRAIVY 258
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C T + VE + LK+ G K G YH +RE A + + ++VAT AFGMG+D+
Sbjct: 259 CATRQKVESVYGFLKKNGFKVGKYHAGRTDSSRERAQDGYNNGKTNILVATNAFGMGLDQ 318
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
PDVR VIHY P +LESYYQE+GR GRDG S C L+Y S+ F G+ EN R
Sbjct: 319 PDVRLVIHYQIPASLESYYQEAGRAGRDGKPSDCILFYHPSDLVTQGFIIGK---ENNRK 375
Query: 355 AIMESLLAAQRYCLLTTCRR 374
L + Y + CR+
Sbjct: 376 GGETLLSHLKEYSIANKCRQ 395
>gi|170728871|ref|YP_001762897.1| ATP-dependent DNA helicase RecQ [Shewanella woodyi ATCC 51908]
gi|169814218|gb|ACA88802.1| ATP-dependent DNA helicase RecQ [Shewanella woodyi ATCC 51908]
Length = 608
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 153/378 (40%), Positives = 222/378 (58%), Gaps = 19/378 (5%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
+L+ FGY FR QK+VI++ DCLV+M TG GKSLCYQLP L LVVSPLI
Sbjct: 16 SLQSVFGYRTFRDGQKEVIEQSCSGYDCLVIMPTGGGKSLCYQLPALQLPGLTLVVSPLI 75
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV SL Q G++A +L S+Q + + + +G +LL+++PE+ ++ F
Sbjct: 76 SLMKDQVDSLIQMGVSAAYLNSSQPREESARILQQMHSGELKLLYVSPER--LLQGHFID 133
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
+L + + LFA+DEAHCIS+WGHDFR EY L KLR VP +ALTATA + R DI
Sbjct: 134 RLHELNLSLFAIDEAHCISQWGHDFRPEYAALGKLREVFPHVPIMALTATADQATRKDIC 193
Query: 181 NSLKLKNPYVTIASFDRKNLFYGV----KVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
+ L + PY + SFDR N+ Y V N+ + FV + S I+YC
Sbjct: 194 DRLTI-TPYSLLTSFDRPNIRYTVAEKLNAANQLRQFV---------AAQNGNSGIIYCS 243
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ + V+E+++ L+ G A YH + R + F++D++ ++VAT+AFGMGI+K +
Sbjct: 244 SRRRVDEVAERLRLQGHNAEAYHAGKTQEERADVQDRFLKDQLDIVVATVAFGMGINKSN 303
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR+V+HY PK++ESYYQE+GR GRDG+ S L + ++ + +S+ Q+
Sbjct: 304 VRYVVHYDIPKSVESYYQETGRAGRDGLESEALLLFDPADIGRVRHLIEQSEPGPQQQVE 363
Query: 357 MESLLAAQRYCLLTTCRR 374
L + TCRR
Sbjct: 364 FHKLNTMAAFAEAQTCRR 381
>gi|91775306|ref|YP_545062.1| ATP-dependent DNA helicase RecQ [Methylobacillus flagellatus KT]
gi|91775450|ref|YP_545206.1| ATP-dependent DNA helicase RecQ [Methylobacillus flagellatus KT]
gi|91709293|gb|ABE49221.1| ATP-dependent DNA helicase RecQ [Methylobacillus flagellatus KT]
gi|91709437|gb|ABE49365.1| ATP-dependent DNA helicase RecQ [Methylobacillus flagellatus KT]
gi|167042457|gb|ABZ07183.1| putative DEAD/DEAH box helicase [uncultured marine microorganism
HF4000_ANIW133B20]
Length = 611
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 155/377 (41%), Positives = 223/377 (59%), Gaps = 14/377 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGYS FR Q+ ++ +++ D LV+M TG GKSLCYQ+P L+ +VVSPLI+
Sbjct: 11 LEQTFGYSAFRGEQEAIVNHVVDGGDALVLMPTGGGKSLCYQIPSLLRPGVGIVVSPLIA 70
Query: 65 LMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV +L+Q GI A FL S A T V G ++L++ PE+ ++ SF S
Sbjct: 71 LMQDQVDALRQLGIQAAFLNSSLDADTARHVYQALMRGELKVLYVAPER--LMTPSFLST 128
Query: 122 L----LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
L + G+ LFA+DEAHC+S+WGHDFR EY+QL L VP +ALTATA R
Sbjct: 129 LHDIQQRFGIALFAIDEAHCVSQWGHDFRPEYRQLTVLHEEFPEVPRIALTATADTPTRN 188
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
+I+ L L++ I+SFDR N+ Y V + N + + ++ + AG I+YC++
Sbjct: 189 EIVERLGLEHARQFISSFDRPNIRYRVALKNNARKQLLGFLESEHPNDAG----IIYCLS 244
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
+ VEE + LK+ G A YH + + R+ + F+R+E +MVAT+AFGMGIDKP+V
Sbjct: 245 RRKVEETAAWLKEQGWDALPYHAGLDATVRQANQQRFLREEGIIMVATVAFGMGIDKPNV 304
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI- 356
R V+H PK++E YYQE+GR GRDG+ + W+ Y + S T +R +
Sbjct: 305 RFVVHLDLPKSMEGYYQETGRAGRDGLDADAWMVYGLGDVVNMRQLLDGSDTPEERKRLE 364
Query: 357 MESLLAAQRYCLLTTCR 373
+ L A +C T CR
Sbjct: 365 RQKLDALLGFCESTACR 381
>gi|308188864|ref|YP_003932995.1| ATP-dependent DNA helicase RecQ [Pantoea vagans C9-1]
gi|308059374|gb|ADO11546.1| ATP-dependent DNA helicase RecQ [Pantoea vagans C9-1]
Length = 609
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 146/337 (43%), Positives = 206/337 (61%), Gaps = 10/337 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FRP Q+ +I + RDCLVVM TG GKSLCYQ+P LV LVVSPLIS
Sbjct: 17 LQDTFGYQQFRPGQQTIINEALSGRDCLVVMPTGGGKSLCYQIPALVREGLTLVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQT---KAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A +L S T QT TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLLANGVAAAYLNSTMTRDQQQTVMADCRTGRVKLLYIAPER--LMMDNFLES 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + AVDEAHCIS+WGHDFR EY L K+R +P +ALTATA E R DI+N
Sbjct: 135 LAHWQPAMLAVDEAHCISQWGHDFRPEYGALGKMRQRFPELPVMALTATADETTRNDIVN 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L +++P + I+SFDR N+ Y ++ + + D+L++ + G I+YC + V
Sbjct: 195 LLHMQDPLIQISSFDRPNIRY--TLVEKFKP-TDQLLRYVQDQRGKCG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G G YH + S+ R F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSRGFSVGAYHAGIDSEQRARVQEAFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
H+ P+ +ESYYQE+GR GRDG+ + + Y ++ A
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMA 346
>gi|421724743|ref|ZP_16163951.1| ATP-dependent DNA helicase RecQ [Klebsiella oxytoca M5al]
gi|410374417|gb|EKP29090.1| ATP-dependent DNA helicase RecQ [Klebsiella oxytoca M5al]
Length = 608
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 143/337 (42%), Positives = 209/337 (62%), Gaps = 10/337 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q +I + RDCLVVM TG GKSLCYQ+P LV G +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQDTIIDTALAGRDCLVVMPTGGGKSLCYQVPALVLGGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S Q+ V +G +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLLANGVAAACLNSTQSREQQQEVMAGCRSGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +LR + +PF+ALTATA + R DI+
Sbjct: 135 LTHWNLSMVAVDEAHCISQWGHDFRPEYAALGQLRQRIPHIPFMALTATADDTTRRDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + ++SFDR N+ Y ++ +D+L++ + +G I+YC + V
Sbjct: 195 LLDLNDPLIQVSSFDRPNIRY---MLMEKFKPLDQLMRYVQDQRGKSG--IIYCNSRSKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSRGISAAAYHAGLENHIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346
>gi|194735447|ref|YP_002116885.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|194710949|gb|ACF90170.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
Length = 615
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 220/375 (58%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+ +I + RDCLVVM TG GKSLCYQ+P L+ +VVSPLI
Sbjct: 22 VLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLI 81
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q+ V TG +LL++ PE+ ++ +F
Sbjct: 82 SLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQIRLLYIAPER--LMLDNFLD 139
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DII
Sbjct: 140 HLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTTRQDII 199
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 200 RQLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 254
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 255 VEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 314
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I
Sbjct: 315 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPAGQLQDIERHK 373
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 374 LNAMGAFAEAQTCRR 388
>gi|163803190|ref|ZP_02197072.1| ATP-dependent DNA helicase RecQ [Vibrio sp. AND4]
gi|159173011|gb|EDP57845.1| ATP-dependent DNA helicase RecQ [Vibrio sp. AND4]
Length = 611
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 152/373 (40%), Positives = 220/373 (58%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK FGY FR Q+ VI +E RD LV++ TG GKSLCYQ+P LV +V+SPLIS
Sbjct: 20 LKDVFGYQAFRDGQQLVIDAAVEGRDSLVILPTGGGKSLCYQIPALVRSGITIVISPLIS 79
Query: 65 LMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV LK G+ AE + S +T SV + TG+ +L++++PE+ ++ F +
Sbjct: 80 LMKDQVDQLKANGVAAECINSTMPRETLLSVYNRMHTGHLKLVYVSPER--VLMRDFIER 137
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +L+ VPF+ALTATA + R DI+
Sbjct: 138 LENLPLSMIAVDEAHCISQWGHDFRPEYAALGQLKRQFSHVPFMALTATADDATRRDILE 197
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L+L NP V + SFDR N+ Y + ++ V ++V+ + G I+YC + K V
Sbjct: 198 RLQLNNPEVYLGSFDRPNIRYNLVEKHKP---VSQVVRYLDTQKGNCG--IIYCGSRKKV 252
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E +++ L ++A YH M + R F RD+I+++VAT+AFGMGI+KP+VR V+
Sbjct: 253 EMVTEKLCNNHIRAAGYHAGMDADERAYVQDAFQRDDIQIVVATVAFGMGINKPNVRFVV 312
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + + Y ++ + E Q+ L
Sbjct: 313 HFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGPQKQVETHKLN 372
Query: 362 AAQRYCLLTTCRR 374
A + TCRR
Sbjct: 373 AMSAFAEAQTCRR 385
>gi|312881011|ref|ZP_07740811.1| ATP-dependent DNA helicase, RecQ-like [Aminomonas paucivorans DSM
12260]
gi|310784302|gb|EFQ24700.1| ATP-dependent DNA helicase, RecQ-like [Aminomonas paucivorans DSM
12260]
Length = 599
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 162/378 (42%), Positives = 218/378 (57%), Gaps = 13/378 (3%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+S L+ FGY FRP Q+ ++ ++E RD L VM TG+GKSLCYQ+P L LVVSP
Sbjct: 5 LSLLRHVFGYRSFRPGQEPLVTALLEGRDALGVMPTGAGKSLCYQIPALAREGVTLVVSP 64
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV +L++ G+ AE L SA + + + T LL++ PE+ + F
Sbjct: 65 LISLMKDQVDALRESGVAAEALHSALPEGEWPRILRRLRTESPCLLYVAPER---LETPF 121
Query: 119 WSKLLKA-GVCLFAVDEAHCISEWGHDFRLEYKQL-DKLRTFLLGVPFVALTATATEKVR 176
+ ++L++ V LF VDEAHC+S+WGHDFR Y ++ + L P A TATAT +VR
Sbjct: 122 FLQVLESLWVNLFVVDEAHCVSQWGHDFRPSYLRIPEALARLSHRPPLGAFTATATPEVR 181
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DI+ L L++P V FDR NL + V+ ++F+ + + G+ S IVYC
Sbjct: 182 EDIVLRLGLRDPLVLSTGFDRPNLSFRVERPRDKKAFLRDFL-----GPRGSRSGIVYCA 236
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
T K VEE+ L+ GV A YH + + RE F+RD VMVAT AFGMGIDK D
Sbjct: 237 TRKAVEEVCAFLRDRGVGAVRYHAGLEDEEREANQEAFVRDRAPVMVATNAFGMGIDKSD 296
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR V+HY P +L+ YYQE+GR GRDG S C L YA + A F G+++ E R
Sbjct: 297 VRFVVHYNMPLSLDGYYQEAGRAGRDGERSECLLLYAPGDVATARFLVGQAEGEEARRQG 356
Query: 357 MESLLAAQRYCLLTTCRR 374
L A YC C R
Sbjct: 357 FRKLQAMVDYCHTPRCLR 374
>gi|259906892|ref|YP_002647248.1| ATP-dependent DNA helicase RecQ [Erwinia pyrifoliae Ep1/96]
gi|387869602|ref|YP_005800972.1| ATP-dependent DNA helicase RecQ [Erwinia pyrifoliae DSM 12163]
gi|224962514|emb|CAX53969.1| ATP-dependent DNA helicase [Erwinia pyrifoliae Ep1/96]
gi|283476685|emb|CAY72514.1| ATP-dependent DNA helicase RecQ [Erwinia pyrifoliae DSM 12163]
Length = 610
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 157/374 (41%), Positives = 219/374 (58%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FRP Q+ +IQ + RDCLVVM TG GKSLCYQ+P LV LVVSPLIS
Sbjct: 17 LRDTFGYQQFRPGQQTIIQESLNGRDCLVVMPTGGGKSLCYQIPALVRQGLTLVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S Q +V +G +LL++ PE+ ++ +F +
Sbjct: 77 LMKDQVDQLLANGVAAACLNSTQNREEQQNVMAGCRSGTVRLLYIAPER--LMMDNFLEQ 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + AVDEAHCIS+WGHDFR EY L +LR L VP +ALTATA E R DI
Sbjct: 135 LTHCNPAMLAVDEAHCISQWGHDFRPEYGALGQLRQRLPDVPVMALTATADETTRNDIAR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L+L +P + I+SFDR N+ Y ++ + + ++L++ + G I+YC + V
Sbjct: 195 LLQLNDPLIQISSFDRPNIRY--TLVEKFKP-TEQLLRYVQDQRGKCG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ G YH M + R F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSRGLSVGAYHAGMDNAHRAHVQEAFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L Y ++ A C E +T+ I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEALLLYDPADMAWLR-RCLEEKTQGPLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>gi|218710963|ref|YP_002418584.1| ATP-dependent DNA helicase RecQ [Vibrio splendidus LGP32]
gi|218323982|emb|CAV20344.1| RecQ [Vibrio splendidus LGP32]
Length = 612
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 148/373 (39%), Positives = 222/373 (59%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FR Q++VI +E +D LV+M TG GKSLCYQ+P LV LV+SPLIS
Sbjct: 21 LQDVFGYQSFRDGQQEVIDLAVEGKDSLVIMPTGGGKSLCYQIPALVRDGLTLVISPLIS 80
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV LK G+ AE + S+ SV + +G ++++ +PE+ ++ F +
Sbjct: 81 LMKDQVDQLKANGVAAECINSSMPRDQLLSVFNRMNSGQLKMVYASPER--VLMRDFIER 138
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +L+ + VP++ALTATA + R DII+
Sbjct: 139 LQGLPLSMIAVDEAHCISQWGHDFRPEYASLGQLKQYFPHVPYMALTATADDATRKDIIS 198
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L+L +P+ + SFDR N+ Y + ++ V ++V+ + G I+YC + K V
Sbjct: 199 RLQLVDPHTHLGSFDRPNIRYNLVEKHKP---VSQVVRYLETQKGNCG--IIYCGSRKKV 253
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E +++ L G++A YH M + R F RD+I+++VAT+AFGMGI+KP+VR V+
Sbjct: 254 EMVTEKLCNNGIRAAGYHAGMDTDERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRFVV 313
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + + + ++ E + Q+ M L
Sbjct: 314 HFDIPRNIESYYQETGRAGRDGLPAEAMMLFDPADMGWLRRMLDEKEEGPQKQVEMHKLN 373
Query: 362 AAQRYCLLTTCRR 374
A + TCRR
Sbjct: 374 AMSAFAEAQTCRR 386
>gi|271502372|ref|YP_003335398.1| ATP-dependent DNA helicase RecQ [Dickeya dadantii Ech586]
gi|270345927|gb|ACZ78692.1| ATP-dependent DNA helicase RecQ [Dickeya dadantii Ech586]
Length = 614
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 146/340 (42%), Positives = 210/340 (61%), Gaps = 10/340 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L++ FGY FRP Q+D+I I RDCLV+M TG GKSLCYQ+P LV LVVSP
Sbjct: 19 MQVLRETFGYQQFRPGQQDIINAAINGRDCLVIMPTGGGKSLCYQIPALVLDGLTLVVSP 78
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDSSVQ---TKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ G+ A L S Q+ Q G +LL++ PE+ + F
Sbjct: 79 LISLMKDQVDQLQAYGVAAACLNSTQSREQQQAVFNACRRGELKLLYIAPER--LSTDGF 136
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+L+ L A+DEAHCIS+WGHDFR EY+ L +++ +P VALTATA + R D
Sbjct: 137 LDQLVHWNTSLIAIDEAHCISQWGHDFRPEYRALGQIKQQCPTLPIVALTATADDTTRQD 196
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I L L++P V ++SFDR N+ Y ++ + + +D+L I +G IVYC +
Sbjct: 197 IARLLDLRDPLVNVSSFDRPNIRY--TLVEKFKP-LDQLWLFIHGQRGKSG--IVYCNSR 251
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE++ L+ G+ G YH + + R + F+RD+++V+VAT+AFGMGI+KP+VR
Sbjct: 252 AKVEDLCARLQNRGLSVGAYHAGLDNDRRSQVQEAFLRDDLQVVVATVAFGMGINKPNVR 311
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
V+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A
Sbjct: 312 FVVHFDIPRNIESYYQETGRAGRDGLPAEAALFYDPADMA 351
>gi|84393647|ref|ZP_00992398.1| ATP-dependent DNA helicase RecQ [Vibrio splendidus 12B01]
gi|84375715|gb|EAP92611.1| ATP-dependent DNA helicase RecQ [Vibrio splendidus 12B01]
Length = 612
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 148/375 (39%), Positives = 224/375 (59%), Gaps = 10/375 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ L+ FGY FR Q++VI +E +D LV+M TG GKSLCYQ+P LV LV+SPL
Sbjct: 19 TILQDVFGYQSFRDGQQEVIDLAVEGKDSLVIMPTGGGKSLCYQIPALVREGLTLVISPL 78
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLM+DQV LK G+ AE + S+ SV + +G ++++++PE+ ++ F
Sbjct: 79 ISLMKDQVDQLKANGVAAECINSSMPRENLISVFNRMNSGQLKMVYVSPER--VLMRDFI 136
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L + + AVDEAHCIS+WGHDFR EY L +L+ + VP++ALTATA + R DI
Sbjct: 137 ERLQGLPLSMIAVDEAHCISQWGHDFRPEYASLGQLKQYFPHVPYMALTATADDATRKDI 196
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
I+ L+L +P+ + SFDR N+ Y + ++ V ++V+ + G I+YC + K
Sbjct: 197 ISRLQLVDPHTHLGSFDRPNIRYNLVEKHKP---VSQVVRYLETQKGNCG--IIYCGSRK 251
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
VE +++ L G++A YH M + R F RD+I+++VAT+AFGMGI+KP+VR
Sbjct: 252 KVEMVTEKLCNNGIRAAGYHAGMDTDERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRF 311
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V+H+ P+ +ESYYQE+GR GRDG+ + + + ++ E + Q+ M
Sbjct: 312 VVHFDIPRNIESYYQETGRAGRDGLPAEAMMLFDPADMGWLRRMLDEKEEGPQKQVEMHK 371
Query: 360 LLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 372 LNAMSAFAEAQTCRR 386
>gi|455789814|gb|EMF41721.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
serovar Lora str. TE 1992]
Length = 624
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 161/380 (42%), Positives = 226/380 (59%), Gaps = 15/380 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKT-ALVVSPL 62
TLKK +G S FR QK+ I+ ++ +D L ++ TG GKSL YQ P ++ + LV+SPL
Sbjct: 15 TLKKKWGLSKFRSGQKNAIESLMAGKDTLAILPTGGGKSLIYQFPAVLDETSLTLVISPL 74
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFW 119
I+LM+DQV SLK +GI AE+ S Q D + ++A TG ++L+++PEKA +
Sbjct: 75 IALMKDQVDSLKAKGIAAEYCNSTQDDLEQLRILSRAVTGKIRILYLSPEKA--LGRQVL 132
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR-TFLLGVPFVALTATATEKVRID 178
L K + AVDEAHC+S+WGHDFR EY+++ +LR + +P +ALTATAT +V D
Sbjct: 133 EILPKFPLARIAVDEAHCVSQWGHDFRPEYRKIHELREKYPKSIPVIALTATATSRVIKD 192
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKV----INRGQSFVDELVQEILKSVAGAGSIIVY 234
I +SL LKNP + SF R+NL + V+ I+R + L Q + ++ +G IVY
Sbjct: 193 ISDSLGLKNPILIKGSFYRENLSFSVRFPQNEISRENELLKLLAQGNFQKIS-SGRAIVY 251
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C T + VE + LK+ G K G YH +RE A + + ++VAT AFGMG+D+
Sbjct: 252 CATRQKVESVYGFLKKNGFKVGKYHAGRTDSSRERAQDGYNNGKTNILVATNAFGMGLDQ 311
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
PDVR VIHY P +LESYYQE+GR GRDG S C L+Y S+ F G+ EN R
Sbjct: 312 PDVRLVIHYQIPASLESYYQEAGRAGRDGKPSDCILFYHPSDLVTQGFIIGK---ENNRK 368
Query: 355 AIMESLLAAQRYCLLTTCRR 374
L + Y + CR+
Sbjct: 369 GGETLLSHLKEYSIANKCRQ 388
>gi|418690087|ref|ZP_13251205.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
str. FPW2026]
gi|400360810|gb|EJP16780.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
str. FPW2026]
Length = 624
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 161/380 (42%), Positives = 226/380 (59%), Gaps = 15/380 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKT-ALVVSPL 62
TLKK +G S FR QK+ I+ ++ +D L ++ TG GKSL YQ P ++ + LV+SPL
Sbjct: 15 TLKKKWGLSKFRSGQKNAIESLMAGKDTLAILPTGGGKSLIYQFPAVLDETSLTLVISPL 74
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFW 119
I+LM+DQV SLK +GI AE+ S Q D + ++A TG ++L+++PEKA +
Sbjct: 75 IALMKDQVDSLKAKGIAAEYCNSTQDDLEQLRILSRAVTGKIRILYLSPEKA--LGRQVL 132
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR-TFLLGVPFVALTATATEKVRID 178
L K + AVDEAHC+S+WGHDFR EY+++ +LR + +P +ALTATAT +V D
Sbjct: 133 EILPKFPLARIAVDEAHCVSQWGHDFRPEYRKIHELREKYPKSIPVIALTATATSRVIKD 192
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKV----INRGQSFVDELVQEILKSVAGAGSIIVY 234
I +SL LKNP + SF R+NL + V+ I+R + L Q + ++ +G IVY
Sbjct: 193 ISDSLGLKNPILIKGSFYRENLSFSVRFPQNEISRENELLKLLAQGNFQKIS-SGRAIVY 251
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C T + VE + LK+ G K G YH +RE A + + ++VAT AFGMG+D+
Sbjct: 252 CATRQKVESVYGFLKKNGFKVGKYHAGRTDSSRERAQDGYNNGKTNILVATNAFGMGLDQ 311
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
PDVR VIHY P +LESYYQE+GR GRDG S C L+Y S+ F G+ EN R
Sbjct: 312 PDVRLVIHYQIPASLESYYQEAGRAGRDGKPSDCILFYHPSDLVTQGFIIGK---ENNRK 368
Query: 355 AIMESLLAAQRYCLLTTCRR 374
L + Y + CR+
Sbjct: 369 GGETLLSHLKEYSIANKCRQ 388
>gi|431795569|ref|YP_007222473.1| ATP-dependent DNA helicase RecQ [Echinicola vietnamensis DSM 17526]
gi|430786334|gb|AGA76463.1| ATP-dependent DNA helicase RecQ [Echinicola vietnamensis DSM 17526]
Length = 725
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 156/377 (41%), Positives = 233/377 (61%), Gaps = 12/377 (3%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
LKK FG++ FR Q+ ++ I++ + V+M TG+GKSLCYQLP + TA+V+SPL
Sbjct: 7 ENLKKIFGFNQFRGNQEAIVDNILQGNNTFVIMPTGAGKSLCYQLPAVTKEGTAIVISPL 66
Query: 63 ISLMQDQVMSLKQRGINAEFLGS--AQTDSS-VQTKAETGYFQLLFMTPEKACIIPISFW 119
I+LM++QV L GINA FL S ++T+++ V+ + +G +LL++ PE +
Sbjct: 67 IALMKNQVDQLNAFGINAHFLNSTLSKTETNKVKKEVLSGATKLLYVAPE--SLTKEENV 124
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFL-LGVPFVALTATATEKVRID 178
L A + A+DEAHCISEWGHDFR EY+++ + + +P +ALTATAT KV+ D
Sbjct: 125 EFLKSAQLSFVAIDEAHCISEWGHDFRPEYRKIKSIIAQIGDALPIIALTATATPKVQQD 184
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I +L ++ + +SF+R NLFY V+ + +S + + + +KS G II YC++
Sbjct: 185 IQRNLNMEEADLFKSSFNRTNLFYEVRP--KAKSDTKKHLIKYVKSQKGKSGII-YCLSR 241
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K VEEI++ LK G+ A YH + S R + F+ +E+ V+VAT+AFGMGIDKPDVR
Sbjct: 242 KKVEEIAELLKVNGINAAPYHAGLESAMRIKNQDDFLNEEVDVVVATIAFGMGIDKPDVR 301
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD-FYCGESQTENQRTAIM 357
+VIHY PK+LE YYQE+GR GRDG+ C ++Y + K + F + E + ++
Sbjct: 302 YVIHYDVPKSLEGYYQETGRAGRDGLEGHCLMFYKYEDIVKLEKFNKDKPVNERENAKVL 361
Query: 358 ESLLAAQRYCLLTTCRR 374
+AA Y + CRR
Sbjct: 362 LQEMAA--YAESSVCRR 376
>gi|30690461|ref|NP_195299.2| ATP-dependent DNA helicase Q-like 3 [Arabidopsis thaliana]
gi|75334307|sp|Q9FT72.1|RQL3_ARATH RecName: Full=ATP-dependent DNA helicase Q-like 3; AltName:
Full=RecQ-like protein 3; Short=AtRecQ3; Short=AtRecQl3
gi|11121447|emb|CAC14867.1| DNA Helicase [Arabidopsis thaliana]
gi|332661156|gb|AEE86556.1| ATP-dependent DNA helicase Q-like 3 [Arabidopsis thaliana]
Length = 713
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 158/390 (40%), Positives = 230/390 (58%), Gaps = 25/390 (6%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+V L+ +FG++ FR Q + IQ ++ RDC +M TG GKS+CYQ+P L LVVS
Sbjct: 24 LVKLLRWHFGHADFRGKQLEAIQAVVSGRDCFCLMPTGGGKSICYQIPALAKPGIVLVVS 83
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETG--YFQLLFMTPEKACIIP 115
PLI+LM++QVM+LK++GI AE+L S Q + + ++G +LL++TPE I
Sbjct: 84 PLIALMENQVMALKEKGIAAEYLSSTQATHVKNKIHEDLDSGKPSVRLLYVTPE--LIAT 141
Query: 116 ISFWSKLLKAG----VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATA 171
F KL K + L A+DEAHCIS WGHDFR Y+QL LR L VP +ALTATA
Sbjct: 142 KGFMLKLRKLHSRGLLNLIAIDEAHCISSWGHDFRPSYRQLSTLRDSLADVPVLALTATA 201
Query: 172 TEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSI 231
KV+ D+I+SL L+NP V +SF+R N+FY V R + +D ++ + G+I
Sbjct: 202 APKVQKDVIDSLNLRNPLVLKSSFNRPNIFYEV----RYKDLLDNAYTDLGNLLKSCGNI 257
Query: 232 --IVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFG 289
I+YC+ +++S L +G+ + YH + SK R ++ + +++VAT+AFG
Sbjct: 258 CAIIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFG 317
Query: 290 MGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQT 349
MGIDK DVR V H+ PK++ES+YQESGR GRD + S LYY + K ++ S+
Sbjct: 318 MGIDKKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSRSVLYYGVDDRKKMEYLLRNSEN 377
Query: 350 ENQR-----TAIMESLLAAQRYCLLTTCRR 374
+ T+ E ++ YC + CRR
Sbjct: 378 KKSSSSKKPTSDFEQIVT---YCEGSGCRR 404
>gi|455737381|ref|YP_007503647.1| ATP-dependent DNA helicase RecQ [Morganella morganii subsp.
morganii KT]
gi|455418944|gb|AGG29274.1| ATP-dependent DNA helicase RecQ [Morganella morganii subsp.
morganii KT]
Length = 608
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 222/375 (59%), Gaps = 10/375 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ L++ FGY FR Q D+I + RDCLVVM TG GKSLCYQ+P L+ +VVSPL
Sbjct: 15 AILRQVFGYQQFRAGQSDIIDTVTGGRDCLVVMPTGGGKSLCYQIPALMLPGLTVVVSPL 74
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFW 119
ISLM+DQV L+ G+ A +L SAQT Q E +LL++ PE+ ++ SF
Sbjct: 75 ISLMKDQVDQLRLLGVEAGYLNSAQTAQEQQKVLEGCHNNRIKLLYVAPER--LLMSSFI 132
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L + L AVDEAHCIS+WGHDFR EY + +LR L GVP +ALTATA R DI
Sbjct: 133 RQLQQWQPSLLAVDEAHCISQWGHDFRPEYCAIGELRQHLPGVPVIALTATADNTTRSDI 192
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+ L+L +P + I+SFDR N+ Y ++ + ++F D+L + G I+YC +
Sbjct: 193 CSRLRLSDPLIHISSFDRPNIRY--TLVEKYKAF-DQLWMFVRGQKGQCG--IIYCNSRN 247
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
VE+++ L++ G+ YH + + RE F++D ++V+VAT+AFGMGI+K +VR
Sbjct: 248 KVEDVAARLQKRGLSVAAYHAGLDNSQREWVQDAFLKDNLQVVVATVAFGMGINKSNVRF 307
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V H+ P+ +ESYYQE+GR GRDG+++ L+Y ++ A E Q+
Sbjct: 308 VAHFDIPRNIESYYQETGRAGRDGVSAEAVLFYDPADMAWLRRCLDEKPAGPQKDIEQHK 367
Query: 360 LLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 368 LNAMGAFAQAQTCRR 382
>gi|218134965|ref|ZP_03463769.1| hypothetical protein BACPEC_02870 [[Bacteroides] pectinophilus ATCC
43243]
gi|217990350|gb|EEC56361.1| ATP-dependent DNA helicase RecQ [[Bacteroides] pectinophilus ATCC
43243]
Length = 641
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 156/391 (39%), Positives = 232/391 (59%), Gaps = 33/391 (8%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
STLK YFGY FR Q++V+ I+E RD L +M TG+GKS+CYQ+P L+ +VVSPL
Sbjct: 5 STLKHYFGYDSFRGGQEEVVNAILEGRDVLAIMPTGAGKSICYQIPALMLDGITIVVSPL 64
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFW 119
ISLMQDQV +L + G++A ++ S+ T+S + A G ++++++ PE+ + +
Sbjct: 65 ISLMQDQVKALNKAGVHAAYINSSLTESQISKALFLASQGTYKIIYVAPERLGGYEFNAF 124
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVP----FVALTATATEKV 175
++ A + + +DEAHCIS+WG DFR Y K+ F+ G+P A TATAT++V
Sbjct: 125 AR--SAHISMVTIDEAHCISQWGQDFRPAYL---KILDFVNGLPKRPVVSAFTATATKEV 179
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYC 235
+ DI+ L L P V I FDR+NL+Y V+ + + +F+ + ++E S I+YC
Sbjct: 180 KDDILCILNLNAPKVVITGFDRQNLYYRVEQVRKKDAFIVDYIKEHPDQ-----SGIIYC 234
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
T K+ + + + LK G++A YH +G++ R+ FI D + V+VAT AFGMGIDKP
Sbjct: 235 ATRKNTDAVCELLKSEGIRASEYHAGLGTEQRKNNQDDFIYDRVDVIVATNAFGMGIDKP 294
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYA-------RSNFAKGDFYCGESQ 348
DVR VIHY P+++E+YYQE+GR GRDG + C L ++ R DF ++
Sbjct: 295 DVRFVIHYNMPQSMENYYQEAGRAGRDGEPAECILLFSPQDVVINRMLLDSKDF--SDTD 352
Query: 349 TEN-----QRTAIMESLLAAQRYCLLTTCRR 374
E+ QR M L + YC T C R
Sbjct: 353 IEDIELIKQRD--MYRLRVMENYCRTTECLR 381
>gi|28899781|ref|NP_799386.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus RIMD
2210633]
gi|153839097|ref|ZP_01991764.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus AQ3810]
gi|260362513|ref|ZP_05775439.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus K5030]
gi|260877193|ref|ZP_05889548.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus AN-5034]
gi|260897237|ref|ZP_05905733.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus Peru-466]
gi|260901369|ref|ZP_05909764.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus AQ4037]
gi|28808033|dbj|BAC61270.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus RIMD
2210633]
gi|149747393|gb|EDM58357.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus AQ3810]
gi|308088951|gb|EFO38646.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus Peru-466]
gi|308094160|gb|EFO43855.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus AN-5034]
gi|308107192|gb|EFO44732.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus AQ4037]
gi|308112667|gb|EFO50207.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus K5030]
Length = 611
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 147/373 (39%), Positives = 221/373 (59%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FR Q++VI+ +E +D LV+M TG GKSLCYQ+P LV LV+SPLIS
Sbjct: 20 LEEVFGYQTFRDGQQEVIESAVEGKDSLVIMPTGGGKSLCYQIPALVRSGITLVISPLIS 79
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV LK G+ AE + S + SV + +G +L++++PE+ ++ F +
Sbjct: 80 LMKDQVDQLKANGVAAECVNSTMSREELLSVYNRMHSGQLKLVYVSPER--VLMRDFIER 137
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +L+ VPF+ALTATA + R DI+
Sbjct: 138 LENLPLAMIAVDEAHCISQWGHDFRPEYAALGQLKQHFSHVPFMALTATADDATRRDILE 197
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L+L P+V + SFDR N+ Y + ++ + ++++ + G I+YC + K V
Sbjct: 198 RLRLHEPHVHLGSFDRPNIRYNLVEKHKP---ISQIIRYLDTQKGNCG--IIYCGSRKKV 252
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E +++ L ++A YH M + R F RD+I+++VAT+AFGMGI+KP+VR V+
Sbjct: 253 EMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRFVV 312
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + + Y ++ + E Q+ L
Sbjct: 313 HFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGPQKQVESHKLN 372
Query: 362 AAQRYCLLTTCRR 374
A + TCRR
Sbjct: 373 AMSAFAEAQTCRR 385
>gi|381403551|ref|ZP_09928235.1| ATP-dependent DNA helicase RecQ [Pantoea sp. Sc1]
gi|380736750|gb|EIB97813.1| ATP-dependent DNA helicase RecQ [Pantoea sp. Sc1]
Length = 608
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 147/337 (43%), Positives = 207/337 (61%), Gaps = 10/337 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FRP Q+ +I + + RDCLVVM TG GKSLCYQ+P LV LVVSPLIS
Sbjct: 17 LQDTFGYQQFRPGQQTIINQALSGRDCLVVMPTGGGKSLCYQIPALVREGLTLVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQT---KAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S T QT TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLLANGVAAACLNSTMTREQQQTVMADCRTGRVKLLYIAPER--LMMDNFLDN 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + AVDEAHCIS+WGHDFR EY L +LR VP +ALTATA E R DI+N
Sbjct: 135 LAHWQPVMLAVDEAHCISQWGHDFRPEYGALGRLRERFPEVPVMALTATADETTRNDIVN 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L +++P + I+SFDR N+ Y ++ + + D+L++ + G I+YC + V
Sbjct: 195 LLHMQDPLIQISSFDRPNIRY--TLVEKFKP-TDQLLRYVQDQRGKCG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ G YH + S+ R F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSRGLSVGAYHAGIDSEQRARVQEAFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
H+ P+ +ESYYQE+GR GRDG+ + + Y ++ A
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMA 346
>gi|456826055|gb|EMF74425.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
serovar Canicola str. LT1962]
Length = 624
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 161/380 (42%), Positives = 226/380 (59%), Gaps = 15/380 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKT-ALVVSPL 62
TLKK +G S FR QK+ I+ ++ +D L ++ TG GKSL YQ P ++ + LV+SPL
Sbjct: 15 TLKKKWGLSKFRSGQKNAIESLMAGKDTLAILPTGGGKSLIYQFPAVLDETSLTLVISPL 74
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFW 119
I+LM+DQV SLK +GI AE+ S Q D + ++A TG ++L+++PEKA +
Sbjct: 75 IALMKDQVDSLKAKGIAAEYCNSTQDDLEQLRILSRAVTGKIRILYLSPEKA--LGRQVL 132
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR-TFLLGVPFVALTATATEKVRID 178
L K + AVDEAHC+S+WGHDFR EY+++ +LR + +P +ALTATAT +V D
Sbjct: 133 EILPKFPLARIAVDEAHCVSQWGHDFRPEYRKIHELREKYPKSIPVIALTATATSRVIKD 192
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKV----INRGQSFVDELVQEILKSVAGAGSIIVY 234
I +SL LKNP + SF R+NL + V+ I+R + L Q + ++ +G IVY
Sbjct: 193 ISDSLGLKNPILIKGSFYRENLSFSVRFPQNEISRENELLKLLAQGNFQKIS-SGRAIVY 251
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C T + VE + LK+ G K G YH +RE A + + ++VAT AFGMG+D+
Sbjct: 252 CATRQKVESVYGFLKKNGFKVGKYHAGRTDSSRERAQDGYNNGKTNILVATNAFGMGLDQ 311
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
PDVR VIHY P +LESYYQE+GR GRDG S C L+Y S+ F G+ EN R
Sbjct: 312 PDVRLVIHYQIPASLESYYQEAGRAGRDGKPSDCILFYHPSDLVTQGFIIGK---ENNRK 368
Query: 355 AIMESLLAAQRYCLLTTCRR 374
L + Y + CR+
Sbjct: 369 GGETLLSHLKEYSIANKCRQ 388
>gi|300721460|ref|YP_003710735.1| ATP-dependent DNA helicase [Xenorhabdus nematophila ATCC 19061]
gi|297627952|emb|CBJ88501.1| ATP-dependent DNA helicase [Xenorhabdus nematophila ATCC 19061]
Length = 608
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 154/378 (40%), Positives = 220/378 (58%), Gaps = 18/378 (4%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
TL+K FGY FRP Q+ VI +++ DCLVVM TG GKSLCYQ+P LV LVVSPLI
Sbjct: 16 TLRKTFGYQQFRPGQQQVIDAVLDGLDCLVVMPTGGGKSLCYQIPALVKDGLTLVVSPLI 75
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L+ G+ AE L S Q+ + + G +LL++ PE+ ++ +F
Sbjct: 76 SLMKDQVDQLRANGVEAECLNSTQSREQQFDIIQRCRQGSIKLLYIAPER--LVTDNFLE 133
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
+L + AVDEAHCIS+WGHDFR EY+ L +LR +P +ALTATA R DI+
Sbjct: 134 QLHDWRPVVLAVDEAHCISQWGHDFRPEYRALGQLRRRFPNLPVIALTATADNTTRQDIV 193
Query: 181 NSLKLKNPYVTIASFDRKNLFYGV----KVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
L+L P + ++SFDR N+ Y + K +++ SFV ++ G II YC
Sbjct: 194 RLLELHEPIIHLSSFDRPNIRYTLVEKYKPLDQLWSFV--------RAQQGKSGII-YCN 244
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ VEE ++ L++ G+ YH + + R F RD+++++VAT+AFGMGI+KP+
Sbjct: 245 SRTKVEETAERLQKRGLSVAPYHAGLENDQRAWVQDAFQRDDLQIVVATVAFGMGINKPN 304
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR V+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ E Q+
Sbjct: 305 VRFVVHFNIPRNIESYYQETGRAGRDGLPAEAVLFYDPADMVWLRRCLEEKPAGEQQDIE 364
Query: 357 MESLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 365 RHKLNAMGAFAEAQTCRR 382
>gi|255020906|ref|ZP_05292962.1| ATP-dependent DNA helicase RecQ [Acidithiobacillus caldus ATCC
51756]
gi|254969697|gb|EET27203.1| ATP-dependent DNA helicase RecQ [Acidithiobacillus caldus ATCC
51756]
Length = 611
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 161/374 (43%), Positives = 222/374 (59%), Gaps = 9/374 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FG+S FRP Q VI R++ D LV+M TG GKSLCYQ+P L TA+VVSPLI+
Sbjct: 12 LQHVFGFSDFRPPQDAVIARLLGGGDALVLMPTGGGKSLCYQVPALTLPGTAVVVSPLIA 71
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L+Q G++A L S Q E G +LL++ PE+ ++
Sbjct: 72 LMEDQVQALQQYGVSAHALHSGLGVDETQRIEEALSRGEIKLLYVAPER--LLQERSLRL 129
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + LFA+DEAHC+S+WGHDFR EY +L L VP VALTATA + R +I +
Sbjct: 130 LARLDISLFAIDEAHCVSQWGHDFRPEYLRLQLLHERFPSVPRVALTATADPRTREEIRS 189
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L V SFDR N+ Y ++ + G+S +L+ I + A S IVYC++ K V
Sbjct: 190 RLGLLQAPVFQRSFDRPNIHY--RLQSGGESGRQQLLHFIHQYHA-KDSGIVYCLSRKRV 246
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
EE ++ LK+ G+ A YH + + R +F DE+R++VAT+AFGMGIDKPDVR V
Sbjct: 247 EETAQWLKEQGLSALPYHAGLDAATRRRHQAMFQNDEVRIVVATIAFGMGIDKPDVRFVA 306
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI-MESL 360
H PK+LESYYQE+GR GRDG+ + WL+Y + + +S+ + A+ +E L
Sbjct: 307 HLNLPKSLESYYQETGRAGRDGLPADAWLHYGLQDVVQLRQMIQQSEADAAHKALELERL 366
Query: 361 LAAQRYCLLTTCRR 374
A C CRR
Sbjct: 367 EAMLGLCETVGCRR 380
>gi|418669215|ref|ZP_13230605.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
serovar Pyrogenes str. 2006006960]
gi|421085029|ref|ZP_15545884.1| ATP-dependent DNA helicase, RecQ family [Leptospira santarosai str.
HAI1594]
gi|421102091|ref|ZP_15562701.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
serovar Icterohaemorrhagiae str. Verdun LP]
gi|421123463|ref|ZP_15583743.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
str. Brem 329]
gi|410343514|gb|EKO94745.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
str. Brem 329]
gi|410368236|gb|EKP23614.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
serovar Icterohaemorrhagiae str. Verdun LP]
gi|410432422|gb|EKP76778.1| ATP-dependent DNA helicase, RecQ family [Leptospira santarosai str.
HAI1594]
gi|410755050|gb|EKR16689.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
serovar Pyrogenes str. 2006006960]
Length = 624
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 161/380 (42%), Positives = 226/380 (59%), Gaps = 15/380 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKT-ALVVSPL 62
TLKK +G S FR QK+ I+ ++ +D L ++ TG GKSL YQ P ++ + LV+SPL
Sbjct: 15 TLKKKWGLSKFRSGQKNAIESLMAGKDTLAILPTGGGKSLIYQFPAVLDETSLTLVISPL 74
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFW 119
I+LM+DQV SLK +GI AE+ S Q D + ++A TG ++L+++PEKA +
Sbjct: 75 IALMKDQVDSLKAKGIAAEYCNSTQDDLEQLRILSRAVTGKIRILYLSPEKA--LGRQVL 132
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR-TFLLGVPFVALTATATEKVRID 178
L K + AVDEAHC+S+WGHDFR EY+++ +LR + +P +ALTATAT +V D
Sbjct: 133 EILPKFPLARIAVDEAHCVSQWGHDFRPEYRKIHELREKYPKSIPVIALTATATSRVIKD 192
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKV----INRGQSFVDELVQEILKSVAGAGSIIVY 234
I +SL LKNP + SF R+NL + V+ I+R + L Q + ++ +G IVY
Sbjct: 193 ISDSLGLKNPILIKGSFYRENLSFSVRFPQNEISRENELLKLLAQGNFQKIS-SGRAIVY 251
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C T + VE + LK+ G K G YH +RE A + + ++VAT AFGMG+D+
Sbjct: 252 CATRQKVESVYGFLKKNGFKVGKYHAGRTDSSRERAQDGYNNGKTNILVATNAFGMGLDQ 311
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
PDVR VIHY P +LESYYQE+GR GRDG S C L+Y S+ F G+ EN R
Sbjct: 312 PDVRLVIHYQIPASLESYYQEAGRAGRDGKPSDCILFYHPSDLVTQGFIIGK---ENNRK 368
Query: 355 AIMESLLAAQRYCLLTTCRR 374
L + Y + CR+
Sbjct: 369 GGETLLSHLKEYSIANKCRQ 388
>gi|417761986|ref|ZP_12409982.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
str. 2002000624]
gi|418670944|ref|ZP_13232304.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
str. 2002000623]
gi|409942175|gb|EKN87796.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
str. 2002000624]
gi|410582060|gb|EKQ49861.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
str. 2002000623]
Length = 631
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 161/380 (42%), Positives = 226/380 (59%), Gaps = 15/380 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKT-ALVVSPL 62
TLKK +G S FR QK+ I+ ++ +D L ++ TG GKSL YQ P ++ + LV+SPL
Sbjct: 22 TLKKKWGLSKFRSGQKNAIESLMAGKDTLAILPTGGGKSLIYQFPAVLDETSLTLVISPL 81
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFW 119
I+LM+DQV SLK +GI AE+ S Q D + ++A TG ++L+++PEKA +
Sbjct: 82 IALMKDQVDSLKAKGIAAEYCNSTQDDLEQLRILSRAVTGKIRILYLSPEKA--LGRQVL 139
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR-TFLLGVPFVALTATATEKVRID 178
L K + AVDEAHC+S+WGHDFR EY+++ +LR + +P +ALTATAT +V D
Sbjct: 140 EILPKFPLARIAVDEAHCVSQWGHDFRPEYRKIHELREKYPKSIPVIALTATATSRVIKD 199
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKV----INRGQSFVDELVQEILKSVAGAGSIIVY 234
I +SL LKNP + SF R+NL + V+ I+R + L Q + ++ +G IVY
Sbjct: 200 ISDSLGLKNPILIKGSFYRENLSFSVRFPQNEISRENELLKLLAQGNFQKIS-SGRAIVY 258
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C T + VE + LK+ G K G YH +RE A + + ++VAT AFGMG+D+
Sbjct: 259 CATRQKVESVYGFLKKNGFKVGKYHAGRTDSSRERAQDGYNNGKTNILVATNAFGMGLDQ 318
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
PDVR VIHY P +LESYYQE+GR GRDG S C L+Y S+ F G+ EN R
Sbjct: 319 PDVRLVIHYQIPASLESYYQEAGRAGRDGKPSDCVLFYHPSDLVTQGFIIGK---ENNRK 375
Query: 355 AIMESLLAAQRYCLLTTCRR 374
L + Y + CR+
Sbjct: 376 GGETLLSHLKEYSIANKCRQ 395
>gi|417765675|ref|ZP_12413632.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
serovar Bulgarica str. Mallika]
gi|400352034|gb|EJP04241.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
serovar Bulgarica str. Mallika]
Length = 624
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 161/380 (42%), Positives = 226/380 (59%), Gaps = 15/380 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKT-ALVVSPL 62
TLKK +G S FR QK+ I+ ++ +D L ++ TG GKSL YQ P ++ + LV+SPL
Sbjct: 15 TLKKKWGLSKFRSGQKNAIESLMAGKDTLAILPTGGGKSLIYQFPAVLDETSLTLVISPL 74
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFW 119
I+LM+DQV SLK +GI AE+ S Q D + ++A TG ++L+++PEKA +
Sbjct: 75 IALMKDQVDSLKAKGIAAEYCNSTQDDLEQLRILSRAVTGKIRILYLSPEKA--LGRQVL 132
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR-TFLLGVPFVALTATATEKVRID 178
L K + AVDEAHC+S+WGHDFR EY+++ +LR + +P +ALTATAT +V D
Sbjct: 133 EILPKFPLARIAVDEAHCVSQWGHDFRPEYRKIHELREKYPKSIPVIALTATATSRVIKD 192
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKV----INRGQSFVDELVQEILKSVAGAGSIIVY 234
I +SL LKNP + SF R+NL + V+ I+R + L Q + ++ +G IVY
Sbjct: 193 ISDSLGLKNPILIKGSFYRENLSFSVRFPQNEISRENELLKLLAQGNFQKIS-SGRAIVY 251
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C T + VE + LK+ G K G YH +RE A + + ++VAT AFGMG+D+
Sbjct: 252 CATRQKVESVYGFLKKNGFKVGKYHAGRTDSSRERAQDGYNNGKTNILVATNAFGMGLDQ 311
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
PDVR VIHY P +LESYYQE+GR GRDG S C L+Y S+ F G+ EN R
Sbjct: 312 PDVRLVIHYQIPASLESYYQEAGRAGRDGKPSDCILFYHPSDLVTQGFIIGK---ENNRK 368
Query: 355 AIMESLLAAQRYCLLTTCRR 374
L + Y + CR+
Sbjct: 369 GGETLLSHLKEYSIANKCRQ 388
>gi|424842508|ref|ZP_18267133.1| ATP-dependent DNA helicase RecQ [Saprospira grandis DSM 2844]
gi|395320706|gb|EJF53627.1| ATP-dependent DNA helicase RecQ [Saprospira grandis DSM 2844]
Length = 737
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 156/383 (40%), Positives = 235/383 (61%), Gaps = 15/383 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ + LKKYFG+ F+ Q+++IQ I+ +D V+M TG GKSLCYQLP L++ TA+VVS
Sbjct: 8 LTTALKKYFGFEQFKGQQEEIIQSILGGQDTFVIMPTGGGKSLCYQLPALLSEGTAIVVS 67
Query: 61 PLISLMQDQVMSLKQRGIN---AEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACI- 113
PLI+LM++QV +++ + A FL S+ + + V+ + +G +LL++ PE
Sbjct: 68 PLIALMKNQVDAVRSYAESDQVAHFLNSSLSRAKVKEVKQDIVSGATKLLYIAPETLTKE 127
Query: 114 IPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKL-RTFLLGVPFVALTATAT 172
+ F S++ V AVDEAHCISEWGHDFR EY+++ + +P +ALTATAT
Sbjct: 128 DTLRFLSQI---KVSFVAVDEAHCISEWGHDFRPEYRRIRSMIENIEQEIPIIALTATAT 184
Query: 173 EKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSII 232
KVR+DI+ +L+L+ P + SF+R NLFY V+ + + + +VQ +K A S I
Sbjct: 185 PKVRMDIVKTLRLEAPREFMDSFNRDNLFYEVQPKGKKEDVLRRIVQ-FIKDKAPNESGI 243
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
+Y K EE++K L +KA YH + +K R + F+ +++ V+VAT+AFGMGI
Sbjct: 244 IYVQNRKTTEEVAKVLSVNDIKAAPYHAGLEAKLRSDTQDAFLMEKVDVIVATIAFGMGI 303
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD-FYCGESQTEN 351
DKPDVR VIHY PK++E+YYQE+GR GRDG + C +Y+ + + + F + E
Sbjct: 304 DKPDVRFVIHYDIPKSIENYYQETGRAGRDGQHAHCLTFYSYKDILRLEKFLRDKPVAER 363
Query: 352 QRTAIMESLLAAQRYCLLTTCRR 374
+ A + + + A Y T CRR
Sbjct: 364 EMGAQLLAEMIA--YAETTACRR 384
>gi|417775238|ref|ZP_12423094.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
str. 2002000621]
gi|410574933|gb|EKQ37959.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
str. 2002000621]
Length = 624
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 161/380 (42%), Positives = 226/380 (59%), Gaps = 15/380 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKT-ALVVSPL 62
TLKK +G S FR QK+ I+ ++ +D L ++ TG GKSL YQ P ++ + LV+SPL
Sbjct: 15 TLKKKWGLSKFRSGQKNAIESLMAGKDTLAILPTGGGKSLIYQFPAVLDETSLTLVISPL 74
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFW 119
I+LM+DQV SLK +GI AE+ S Q D + ++A TG ++L+++PEKA +
Sbjct: 75 IALMKDQVDSLKAKGIAAEYCNSTQDDLEQLRILSRAVTGKIRILYLSPEKA--LGRQVL 132
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR-TFLLGVPFVALTATATEKVRID 178
L K + AVDEAHC+S+WGHDFR EY+++ +LR + +P +ALTATAT +V D
Sbjct: 133 EILPKFPLARIAVDEAHCVSQWGHDFRPEYRKIHELREKYPKSIPVIALTATATSRVIKD 192
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKV----INRGQSFVDELVQEILKSVAGAGSIIVY 234
I +SL LKNP + SF R+NL + V+ I+R + L Q + ++ +G IVY
Sbjct: 193 ISDSLGLKNPILIKGSFYRENLSFSVRFPQNEISRENELLKLLAQGNFQKIS-SGRAIVY 251
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C T + VE + LK+ G K G YH +RE A + + ++VAT AFGMG+D+
Sbjct: 252 CATRQKVESVYGFLKKNGFKVGKYHAGRTDSSRERAQDGYNNGKTNILVATNAFGMGLDQ 311
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
PDVR VIHY P +LESYYQE+GR GRDG S C L+Y S+ F G+ EN R
Sbjct: 312 PDVRLVIHYQIPASLESYYQEAGRAGRDGKPSDCVLFYHPSDLVTQGFIIGK---ENNRK 368
Query: 355 AIMESLLAAQRYCLLTTCRR 374
L + Y + CR+
Sbjct: 369 GGETLLSHLKEYSIANKCRQ 388
>gi|423111286|ref|ZP_17098981.1| ATP-dependent DNA helicase recQ [Klebsiella oxytoca 10-5243]
gi|423117298|ref|ZP_17104989.1| ATP-dependent DNA helicase recQ [Klebsiella oxytoca 10-5245]
gi|376376415|gb|EHS89194.1| ATP-dependent DNA helicase recQ [Klebsiella oxytoca 10-5245]
gi|376377058|gb|EHS89832.1| ATP-dependent DNA helicase recQ [Klebsiella oxytoca 10-5243]
Length = 608
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 143/337 (42%), Positives = 210/337 (62%), Gaps = 10/337 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+ +I + RDCLVVM TG GKSLCYQ+P LV G +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQETIIDTALAGRDCLVVMPTGGGKSLCYQVPALVLGGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S Q+ V +G +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLLANGVAAACLNSTQSREQQQEVMAGCRSGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +LR + +PF+ALTATA + R DI+
Sbjct: 135 LTHWNLSMVAVDEAHCISQWGHDFRPEYAALGQLRQRIPQIPFMALTATADDTTRRDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + ++SFDR N+ Y ++ +D+L++ + +G I+YC + V
Sbjct: 195 LLGLSDPLIQVSSFDRPNIRY---MLMEKFKPLDQLMRYVQDQRGKSG--IIYCNSRSKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSRGISAAAYHAGLENHIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346
>gi|418702081|ref|ZP_13262996.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
serovar Bataviae str. L1111]
gi|410758896|gb|EKR25118.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
serovar Bataviae str. L1111]
Length = 631
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 161/380 (42%), Positives = 226/380 (59%), Gaps = 15/380 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKT-ALVVSPL 62
TLKK +G S FR QK+ I+ ++ +D L ++ TG GKSL YQ P ++ + LV+SPL
Sbjct: 22 TLKKKWGLSKFRSGQKNAIESLMAGKDTLAILPTGGGKSLIYQFPAVLDETSLTLVISPL 81
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFW 119
I+LM+DQV SLK +GI AE+ S Q D + ++A TG ++L+++PEKA +
Sbjct: 82 IALMKDQVDSLKAKGIAAEYCNSTQDDLEQLRILSRAVTGKIRILYLSPEKA--LGRQML 139
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR-TFLLGVPFVALTATATEKVRID 178
L K + AVDEAHC+S+WGHDFR EY+++ +LR + +P +ALTATAT +V D
Sbjct: 140 EILPKFPLARIAVDEAHCVSQWGHDFRPEYRKIHELREKYPKSIPVIALTATATSRVIKD 199
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKV----INRGQSFVDELVQEILKSVAGAGSIIVY 234
I +SL LKNP + SF R+NL + V+ I+R + L Q + ++ +G IVY
Sbjct: 200 ISDSLGLKNPILIKGSFYRENLSFSVRFPQNEISRENELLKLLAQGNFQKIS-SGRAIVY 258
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C T + VE + LK+ G K G YH +RE A + + ++VAT AFGMG+D+
Sbjct: 259 CATRQKVESVYGFLKKNGFKVGKYHAGRTDSSRERAQDGYNNGKTNILVATNAFGMGLDQ 318
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
PDVR VIHY P +LESYYQE+GR GRDG S C L+Y S+ F G+ EN R
Sbjct: 319 PDVRLVIHYQIPASLESYYQEAGRAGRDGKPSDCVLFYHPSDLVTQGFIIGK---ENNRK 375
Query: 355 AIMESLLAAQRYCLLTTCRR 374
L + Y + CR+
Sbjct: 376 GGETLLSHLKEYSISNKCRQ 395
>gi|292486686|ref|YP_003529556.1| ATP-dependent DNA helicase RecQ [Erwinia amylovora CFBP1430]
gi|292897923|ref|YP_003537292.1| ATP-dependent DNA helicase [Erwinia amylovora ATCC 49946]
gi|428783612|ref|ZP_19001107.1| ATP-dependent DNA helicase RecQ [Erwinia amylovora ACW56400]
gi|291197771|emb|CBJ44866.1| ATP-dependent DNA helicase [Erwinia amylovora ATCC 49946]
gi|291552103|emb|CBA19140.1| ATP-dependent DNA helicase RecQ [Erwinia amylovora CFBP1430]
gi|312170752|emb|CBX79014.1| ATP-dependent DNA helicase RecQ [Erwinia amylovora ATCC BAA-2158]
gi|426277898|gb|EKV55621.1| ATP-dependent DNA helicase RecQ [Erwinia amylovora ACW56400]
Length = 610
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 147/337 (43%), Positives = 207/337 (61%), Gaps = 10/337 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FRP Q+ +IQ + RDCLVVM TG GKSLCYQ+P LV LVVSPLIS
Sbjct: 17 LRDTFGYQQFRPGQQTIIQESLNGRDCLVVMPTGGGKSLCYQIPALVRQGLTLVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S Q +V +G +LL++ PE+ ++ +F +
Sbjct: 77 LMKDQVDQLLANGVAAACLNSTQNREEQQNVMAGCRSGKVRLLYIAPER--LMMDNFLEQ 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + AVDEAHCIS+WGHDFR EY L +LR L VP +ALTATA E R DI
Sbjct: 135 LTHCNPAMLAVDEAHCISQWGHDFRPEYGALGQLRQRLPDVPVMALTATADETTRNDIAR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L+L +P + I+SFDR N+ Y ++ + + ++L++ + G I+YC + V
Sbjct: 195 LLQLNDPLIQISSFDRPNIRY--TLVEKFKP-TEQLLRYVQDQRGKCG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ G YH M + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSRGLSVGAYHAGMDNAHRAQVQEAFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
H+ P+ +ESYYQE+GR GRDG+ + L Y ++ A
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEALLLYDPADMA 346
>gi|365875470|ref|ZP_09414998.1| ATP-dependent DNA helicase RecQ [Elizabethkingia anophelis Ag1]
gi|442588734|ref|ZP_21007544.1| ATP-dependent DNA helicase RecQ [Elizabethkingia anophelis R26]
gi|365756729|gb|EHM98640.1| ATP-dependent DNA helicase RecQ [Elizabethkingia anophelis Ag1]
gi|442561492|gb|ELR78717.1| ATP-dependent DNA helicase RecQ [Elizabethkingia anophelis R26]
Length = 735
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 156/384 (40%), Positives = 231/384 (60%), Gaps = 24/384 (6%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ +LKKYFG++ F+ YQ+ +I ++E D V+M TG GKSLCYQLP L++ TA+VVS
Sbjct: 8 IAESLKKYFGFTTFKGYQEQIISSLLEGSDVFVLMPTGGGKSLCYQLPALMSEGTAIVVS 67
Query: 61 PLISLMQDQVMSLK----QRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACI 113
PLI+LM++QV ++ + G+ A L S+ + +T + G +LL++ PE +
Sbjct: 68 PLIALMKNQVDAVNGLSSEEGV-AHVLNSSLNKTQTKTVMDDIRNGRTKLLYVAPE--SL 124
Query: 114 IPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATE 173
I + + + FA+DEAHCISEWGHDFR EY+ L + + VP +ALTATAT
Sbjct: 125 IKEEYIDFFKEVPISFFAIDEAHCISEWGHDFRPEYRNLKSIIDKIADVPVIALTATATP 184
Query: 174 KVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIV 233
KV+ DI +L + N V SF+R NLFY V R + +D+ + + +K+ G S IV
Sbjct: 185 KVQDDIQKTLGMTNALVYKESFNRPNLFYEV----RPKVNIDKEIVKFIKAQNGK-SGIV 239
Query: 234 YCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGID 293
YC++ + VEE ++ L+ G+ A YH + +K R F+ +E+ V+VAT+AFGMGID
Sbjct: 240 YCLSRRKVEEFAQLLQVNGLNALPYHAGLDAKTRVANQDKFLMEEVDVIVATIAFGMGID 299
Query: 294 KPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGES------ 347
KPDVR VIHY PK+LESYYQE+GR GRDG C +Y + K + + +
Sbjct: 300 KPDVRFVIHYDIPKSLESYYQETGRAGRDGGEGHCIAFYDPKDIEKLEKFLAQKPVSERE 359
Query: 348 ---QTENQRTAIMESLLAAQRYCL 368
Q N+ +E+ ++ ++Y L
Sbjct: 360 IGLQLLNEVVGYVETSMSRRQYLL 383
>gi|304398161|ref|ZP_07380036.1| ATP-dependent DNA helicase RecQ [Pantoea sp. aB]
gi|440760554|ref|ZP_20939663.1| ATP-dependent DNA helicase RecQ [Pantoea agglomerans 299R]
gi|304354447|gb|EFM18819.1| ATP-dependent DNA helicase RecQ [Pantoea sp. aB]
gi|436425719|gb|ELP23447.1| ATP-dependent DNA helicase RecQ [Pantoea agglomerans 299R]
Length = 609
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 146/337 (43%), Positives = 207/337 (61%), Gaps = 10/337 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FRP Q+ +I + + RDCLVVM TG GKSLCYQ+P LV LVVSPLIS
Sbjct: 17 LQDTFGYQHFRPGQQTIIHQALSGRDCLVVMPTGGGKSLCYQIPALVREGLTLVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQT---KAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A +L S T QT TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLLANGVAAAYLNSTMTRDQQQTVMADCRTGRVKLLYIAPER--LMMDNFLES 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + AVDEAHCIS+WGHDFR EY L K+R +P +ALTATA E R DI+N
Sbjct: 135 LAHWQPAMLAVDEAHCISQWGHDFRPEYGALGKMRQRFPELPVMALTATADETTRNDIVN 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L +++P + I+SFDR N+ Y ++ + + D+L++ + G I+YC + V
Sbjct: 195 LLHMQDPLIQISSFDRPNIRY--TLVEKFKP-TDQLLRYVQDQRGKCG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G G YH + S+ R F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSRGFSVGAYHAGIDSEQRGRVQEAFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
H+ P+ +ESYYQE+GR GRDG+ + + Y ++ A
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMA 346
>gi|24213325|ref|NP_710806.1| ATP-dependent DNA helicase RecQ [Leptospira interrogans serovar Lai
str. 56601]
gi|45658788|ref|YP_002874.1| ATP-dependent DNA helicase [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|386072985|ref|YP_005987302.1| ATP-dependent DNA helicase RecQ [Leptospira interrogans serovar Lai
str. IPAV]
gi|417786130|ref|ZP_12433826.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
str. C10069]
gi|24194069|gb|AAN47824.1| ATP-dependent DNA helicase RecQ [Leptospira interrogans serovar Lai
str. 56601]
gi|45602032|gb|AAS71511.1| ATP-dependent DNA helicase [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|353456774|gb|AER01319.1| ATP-dependent DNA helicase RecQ [Leptospira interrogans serovar Lai
str. IPAV]
gi|409950675|gb|EKO05198.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
str. C10069]
Length = 631
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 161/380 (42%), Positives = 226/380 (59%), Gaps = 15/380 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKT-ALVVSPL 62
TLKK +G S FR QK+ I+ ++ +D L ++ TG GKSL YQ P ++ + LV+SPL
Sbjct: 22 TLKKKWGLSKFRSGQKNAIESLMAGKDTLAILPTGGGKSLIYQFPAVLDETSLTLVISPL 81
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFW 119
I+LM+DQV SLK +GI AE+ S Q D + ++A TG ++L+++PEKA +
Sbjct: 82 IALMKDQVDSLKAKGIAAEYCNSTQDDLEQLRILSRAVTGKIRILYLSPEKA--LGRQVL 139
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR-TFLLGVPFVALTATATEKVRID 178
L K + AVDEAHC+S+WGHDFR EY+++ +LR + +P +ALTATAT +V D
Sbjct: 140 EILPKFPLARIAVDEAHCVSQWGHDFRPEYRKIHELREKYPKSIPVIALTATATSRVIKD 199
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKV----INRGQSFVDELVQEILKSVAGAGSIIVY 234
I +SL LKNP + SF R+NL + V+ I+R + L Q + ++ +G IVY
Sbjct: 200 ISDSLGLKNPILIKGSFYRENLSFSVRFPQNEISRENELLKLLAQGNFQKIS-SGRAIVY 258
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C T + VE + LK+ G K G YH +RE A + + ++VAT AFGMG+D+
Sbjct: 259 CATRQKVESVYGFLKKNGFKVGKYHAGRTDSSRERAQDGYNNGKTNILVATNAFGMGLDQ 318
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
PDVR VIHY P +LESYYQE+GR GRDG S C L+Y S+ F G+ EN R
Sbjct: 319 PDVRLVIHYQIPASLESYYQEAGRAGRDGKPSDCILFYHPSDLVTQGFIIGK---ENNRK 375
Query: 355 AIMESLLAAQRYCLLTTCRR 374
L + Y + CR+
Sbjct: 376 GGETLLSHLKEYSIANKCRQ 395
>gi|423123017|ref|ZP_17110701.1| ATP-dependent DNA helicase recQ [Klebsiella oxytoca 10-5246]
gi|376391770|gb|EHT04440.1| ATP-dependent DNA helicase recQ [Klebsiella oxytoca 10-5246]
Length = 608
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 143/337 (42%), Positives = 210/337 (62%), Gaps = 10/337 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+ +I + RDCLVVM TG GKSLCYQ+P LV G +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQETIIDTALGGRDCLVVMPTGGGKSLCYQVPALVLGGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S Q+ V +G +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLLANGVAAACLNSTQSREQQQEVMAGCRSGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +LR + +PF+ALTATA + R DI+
Sbjct: 135 LSHWNLAMVAVDEAHCISQWGHDFRPEYAALGQLRQRVPQIPFMALTATADDTTRRDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + ++SFDR N+ Y ++ +D+L++ + +G I+YC + V
Sbjct: 195 LLGLNDPLIQVSSFDRPNIRY---MLMEKFKPLDQLMRYVQDQRGKSG--IIYCNSRSKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSRGISAAAYHAGLENDVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346
>gi|418711648|ref|ZP_13272405.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
serovar Grippotyphosa str. UI 08368]
gi|410768134|gb|EKR43390.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
serovar Grippotyphosa str. UI 08368]
Length = 631
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 162/383 (42%), Positives = 228/383 (59%), Gaps = 21/383 (5%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKT-ALVVSPL 62
TLKK +G S FR QK+ I+ ++ +D L ++ TG GKSL YQ P ++ + LV+SPL
Sbjct: 22 TLKKKWGLSKFRSGQKNAIESLMAGKDTLAILPTGGGKSLIYQFPAVLDETSLTLVISPL 81
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKAC---IIPI 116
I+LM+DQV SLK +GI AE+ S Q D + ++A TG ++L+++PEKA ++ I
Sbjct: 82 IALMKDQVDSLKAKGIAAEYCNSTQDDLEQLRILSRAVTGKIRILYLSPEKALGRQVLEI 141
Query: 117 SFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR-TFLLGVPFVALTATATEKV 175
L K + AVDEAHC+S+WGHDFR EY+++ +LR + +P +ALTATAT +V
Sbjct: 142 -----LPKFPLARIAVDEAHCVSQWGHDFRPEYRKIHELREKYPKSIPVIALTATATSRV 196
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKV----INRGQSFVDELVQEILKSVAGAGSI 231
DI +SL LKNP + SF R+NL + V+ I+R + L Q + ++ +G
Sbjct: 197 IKDISDSLGLKNPILIKGSFYRENLSFSVRFPQNEISRENELLKLLAQGNFQKIS-SGRA 255
Query: 232 IVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMG 291
IVYC T + VE + LK+ G K G YH +RE A + + ++VAT AFGMG
Sbjct: 256 IVYCATRQKVESVYGFLKKNGFKVGKYHAGRTDSSRERAQDGYNNGKTNILVATNAFGMG 315
Query: 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTEN 351
+D+PDVR VIHY P +LESYYQE+GR GRDG S C L+Y S+ F G+ EN
Sbjct: 316 LDQPDVRLVIHYQIPASLESYYQEAGRAGRDGKPSDCILFYHPSDLVTQGFIIGK---EN 372
Query: 352 QRTAIMESLLAAQRYCLLTTCRR 374
R L + Y + CR+
Sbjct: 373 NRKGGETLLSHLKEYSISNKCRQ 395
>gi|404416333|ref|ZP_10998155.1| ATP-dependent DNA helicase RecQ [Staphylococcus arlettae CVD059]
gi|403491211|gb|EJY96734.1| ATP-dependent DNA helicase RecQ [Staphylococcus arlettae CVD059]
Length = 592
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 159/379 (41%), Positives = 226/379 (59%), Gaps = 16/379 (4%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M +TL YFGY FRP QK++I +II+ R+ L V+ TG GKS+CYQ+P L+ G T +V+S
Sbjct: 1 METTLSHYFGYETFRPGQKEIISKIIDHRNVLGVLPTGGGKSICYQVPGLMLGGTTIVIS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV L GINA +L S+ T +V+ + G Q L++ PE+
Sbjct: 61 PLISLMKDQVDQLNAAGINAAYLNSSMTQKQQKAVEQELLRGEVQFLYVAPER---FDNG 117
Query: 118 FWSKLLKA-GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPF--VALTATATEK 174
++ LL+ + L A DEAHCIS+WGHDFR Y+++ + F L F VALTATAT +
Sbjct: 118 YFVNLLQQLTIPLVAFDEAHCISKWGHDFRPSYQEVIH-KVFALPQDFAIVALTATATTE 176
Query: 175 VRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVY 234
V+ DI+ L + S R+NL + V + Q FV + V+E VAG I+Y
Sbjct: 177 VQKDIMQRLNINKNDEIKTSTKRRNLVFKVNPTYQRQKFVLDYVKE-HSDVAG----IIY 231
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C T K VEE+ +A + +++ YH + +K RE+A F+ D +RV+VAT AFGMGIDK
Sbjct: 232 CSTRKQVEELHEAFQDQNIQSTIYHAGLSNKEREQAQNDFVYDRVRVVVATNAFGMGIDK 291
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ-R 353
+VR+VIHY P LESYYQE+GR GRDG+ S C L ++ + ++ S+ ++ +
Sbjct: 292 SNVRYVIHYNMPGDLESYYQEAGRAGRDGLNSDCILLFSERDIGLHQYFISVSKADDDYK 351
Query: 354 TAIMESLLAAQRYCLLTTC 372
+ E L +Y C
Sbjct: 352 DKMGEKLTKMIQYTKTKKC 370
>gi|325283330|ref|YP_004255871.1| ATP-dependent DNA helicase RecQ [Deinococcus proteolyticus MRP]
gi|324315139|gb|ADY26254.1| ATP-dependent DNA helicase RecQ [Deinococcus proteolyticus MRP]
Length = 614
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 158/377 (41%), Positives = 218/377 (57%), Gaps = 16/377 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ +GY FR Q +++ ++ D LV+M TG GKSLCYQLP L+ +VVSPLI+
Sbjct: 20 LRDLWGYGSFRWRQGEIVAQLAAGGDALVLMPTGGGKSLCYQLPSLLRPGVGVVVSPLIA 79
Query: 65 LMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV +L+Q GI A FL S A+ V+ G LL++ PE+ ++
Sbjct: 80 LMQDQVDTLRQLGIRAAFLNSSLSAEGVREVEAALRAGELDLLYVAPER--LLMEGTLRL 137
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L V LFA+DEAHC+S+WGHDFR EY+ L L GVP +ALTATA ++ R D+++
Sbjct: 138 LAGVEVALFAIDEAHCVSQWGHDFRPEYQGLGVLAERFPGVPRIALTATADDRTRADMVS 197
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L+ +ASFDR N+ Y + G+ + E +++ + IVYC++ K V
Sbjct: 198 VLGLEGAPQFVASFDRPNIQYRIA----GKDNAKRQLLEFIRTEHAGDAGIVYCLSRKSV 253
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ ++ L GV A YH + R+EA F+R+E V+VAT+AFGMGIDKPDVR V
Sbjct: 254 EDTAQFLSDSGVPALAYHAGLDHAQRQEAQARFLREEGLVVVATVAFGMGIDKPDVRFVA 313
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAK-GDFYCGESQTENQR---TAIM 357
H PK++E YYQE+GR GRDG S W+ Y + G + E R A +
Sbjct: 314 HLDLPKSMEGYYQETGRAGRDGEPSTAWMVYGLGDVVNLRRMLAGSAAPEWVRRIEGAKL 373
Query: 358 ESLLAAQRYCLLTTCRR 374
++LLA YC T CRR
Sbjct: 374 DALLA---YCETTACRR 387
>gi|372276821|ref|ZP_09512857.1| ATP-dependent DNA helicase RecQ [Pantoea sp. SL1_M5]
Length = 609
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 146/337 (43%), Positives = 206/337 (61%), Gaps = 10/337 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FRP Q+ +I + RDCLVVM TG GKSLCYQ+P LV LVVSPLIS
Sbjct: 17 LQDTFGYQHFRPGQQTIINEALSGRDCLVVMPTGGGKSLCYQIPALVREGLTLVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQT---KAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A +L S T QT TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLLANGVAAAYLNSTMTRDQQQTVMADCRTGRVKLLYIAPER--LMMDNFLDS 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + AVDEAHCIS+WGHDFR EY L K+R +P +ALTATA E R DI+N
Sbjct: 135 LAHWQPAMLAVDEAHCISQWGHDFRPEYGALGKMRQRFPELPVMALTATADETTRNDIVN 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L +++P + I+SFDR N+ Y ++ + + D+L++ + G I+YC + V
Sbjct: 195 LLHMQDPLIQISSFDRPNIRY--TLVEKFKP-TDQLLRYVQDQRGKCG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G G YH + S+ R F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSRGFSVGAYHAGIDSEQRGRVQEAFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
H+ P+ +ESYYQE+GR GRDG+ + + Y ++ A
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMA 346
>gi|421615254|ref|ZP_16056286.1| ATP-dependent DNA helicase RecQ [Rhodopirellula baltica SH28]
gi|408494014|gb|EKJ98640.1| ATP-dependent DNA helicase RecQ [Rhodopirellula baltica SH28]
Length = 745
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 153/367 (41%), Positives = 221/367 (60%), Gaps = 21/367 (5%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
S L+ +GY FRP Q D +Q +I+ RD LVV+ TG GKSLCYQ+P LV ++VVSPL
Sbjct: 26 SVLRSVWGYDSFRPLQADAVQDVIQGRDSLVVLPTGGGKSLCYQVPALVRDGMSVVVSPL 85
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET------GYFQLLFMTPEKACIIPI 116
ISLM+DQV +L G++A + S Q SV+ K ET G ++L++ PE+ + P
Sbjct: 86 ISLMKDQVDALTSNGVSAALVNSTQ---SVEQKRETAERIRRGEIKILYLAPER-LLTPK 141
Query: 117 SFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
+ L + FA+DEAHC+S WGHDFR EY+ L L+ A TATA+E+VR
Sbjct: 142 TL-DFLRSLPISFFAIDEAHCVSNWGHDFRPEYRGLRILKEQFPSASVHAFTATASEQVR 200
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DI L+L P + + FDR NL Y + R ++++ Q I + +G +VYC+
Sbjct: 201 DDIAEQLQLNQPNILVGDFDRPNLTYRML---RADGKLNQIQQCIAQHPGESG--VVYCI 255
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
T K+VE+ + AL+ +GV+ YH + + R+ FI++++ V+VAT+AFGMGIDK +
Sbjct: 256 TRKEVEQTAAALESMGVRTLPYHAGLPDEVRQANQEAFIQEKVDVIVATVAFGMGIDKSN 315
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIH G PK++E Y QESGR GRDG+A+ C L + + GD + EN +
Sbjct: 316 VRFVIHAGMPKSIEHYQQESGRAGRDGLAAECILLH-----SGGDLMSWKRILENGDRSN 370
Query: 357 MESLLAA 363
+S +A+
Sbjct: 371 FQSAMAS 377
>gi|418726031|ref|ZP_13284643.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
str. UI 12621]
gi|409960812|gb|EKO24565.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
str. UI 12621]
Length = 624
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 162/383 (42%), Positives = 228/383 (59%), Gaps = 21/383 (5%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKT-ALVVSPL 62
TLKK +G S FR QK+ I+ ++ +D L ++ TG GKSL YQ P ++ + LV+SPL
Sbjct: 15 TLKKKWGLSKFRSGQKNAIESLMAGKDTLAILPTGGGKSLIYQFPAVLDETSLTLVISPL 74
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKAC---IIPI 116
I+LM+DQV SLK +GI AE+ S Q D + ++A TG ++L+++PEKA ++ I
Sbjct: 75 IALMKDQVDSLKAKGIAAEYCNSTQDDLEQLRILSRAVTGKIRILYLSPEKALGRQVLEI 134
Query: 117 SFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR-TFLLGVPFVALTATATEKV 175
L K + AVDEAHC+S+WGHDFR EY+++ +LR + +P +ALTATAT +V
Sbjct: 135 -----LPKFPLARIAVDEAHCVSQWGHDFRPEYRKIHELREKYPKSIPVIALTATATSRV 189
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKV----INRGQSFVDELVQEILKSVAGAGSI 231
DI +SL LKNP + SF R+NL + V+ I+R + L Q + ++ +G
Sbjct: 190 IKDISDSLGLKNPILIKGSFYRENLSFSVRFPQNEISRENELLKLLAQGNFQKIS-SGRA 248
Query: 232 IVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMG 291
IVYC T + VE + LK+ G K G YH +RE A + + ++VAT AFGMG
Sbjct: 249 IVYCATRQKVESVYGFLKKNGFKVGKYHAGRTDSSRERAQDGYNNGKTNILVATNAFGMG 308
Query: 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTEN 351
+D+PDVR VIHY P +LESYYQE+GR GRDG S C L+Y S+ F G+ EN
Sbjct: 309 LDQPDVRLVIHYQIPASLESYYQEAGRAGRDGKPSDCILFYHPSDLVTQGFIIGK---EN 365
Query: 352 QRTAIMESLLAAQRYCLLTTCRR 374
R L + Y + CR+
Sbjct: 366 NRKGGETLLSHLKEYSISNKCRQ 388
>gi|390436587|ref|ZP_10225125.1| ATP-dependent DNA helicase RecQ [Pantoea agglomerans IG1]
Length = 609
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 146/337 (43%), Positives = 206/337 (61%), Gaps = 10/337 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FRP Q+ +I + RDCLVVM TG GKSLCYQ+P LV LVVSPLIS
Sbjct: 17 LQDTFGYQHFRPGQQTIINEALSGRDCLVVMPTGGGKSLCYQIPALVREGLTLVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQT---KAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A +L S T QT TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLLANGVAAAYLNSTMTREQQQTVMADCRTGRVKLLYIAPER--LMMDNFLDS 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + AVDEAHCIS+WGHDFR EY L K+R +P +ALTATA E R DI+N
Sbjct: 135 LAHWQPAMLAVDEAHCISQWGHDFRPEYGALGKMRQRFPELPVMALTATADETTRNDIVN 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L +++P + I+SFDR N+ Y ++ + + D+L++ + G I+YC + V
Sbjct: 195 LLHMQDPLIQISSFDRPNIRY--TLVEKFKP-TDQLLRYVQDQRGKCG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G G YH + S+ R F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSRGFSVGAYHAGIDSEQRGRVQEAFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
H+ P+ +ESYYQE+GR GRDG+ + + Y ++ A
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMA 346
>gi|53803827|ref|YP_114305.1| ATP-dependent DNA helicase RecQ [Methylococcus capsulatus str.
Bath]
gi|53757588|gb|AAU91879.1| ATP-dependent DNA helicase RecQ [Methylococcus capsulatus str.
Bath]
Length = 719
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 156/383 (40%), Positives = 228/383 (59%), Gaps = 22/383 (5%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ TL+ FGY FR Q +VI++++ D LV+M TG GKSLCYQ+P L+ T +VVSP
Sbjct: 9 LKTLQTVFGYERFRGLQAEVIEQVLNGGDALVLMPTGGGKSLCYQVPALLRPGTGVVVSP 68
Query: 62 LISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LI+LM+DQV +L Q G+ A FL S+ Q V+++ G LL++ PE+ ++ F
Sbjct: 69 LIALMEDQVGALLQLGVKAAFLNSSLDFQAQREVESRFLAGGLDLLYVAPER--LLTERF 126
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ L + + LFA+DEAHC+S+WGHDFR +Y QL L VP +ALTATA E+ R +
Sbjct: 127 LNLLDRVRIALFAIDEAHCVSQWGHDFRADYWQLSLLHQRFPTVPRIALTATADERTRGE 186
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
II L L V + FDR N+ Y + + + + + E ++ + AG IVYC++
Sbjct: 187 IIERLGLDEARVFCSGFDRSNIRYAIGLKSNPRQQLLEFIRRDHEGDAG----IVYCLSR 242
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K VEE + L G+KA YH + ++ R+ R F+ +E ++VAT+AFGMGIDKP+VR
Sbjct: 243 KKVEETAGWLCSKGLKALPYHAGLSAEIRQHNQRRFLLEEGLIVVATVAFGMGIDKPNVR 302
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYA-------RSNFAKGDFYCGESQTEN 351
V H PK+LE+YYQE+GR GRDG+ + W+ Y RS D + E
Sbjct: 303 FVAHLDLPKSLEAYYQETGRAGRDGLPADAWMVYGLQDVITLRSMVESSDADELHKRVER 362
Query: 352 QRTAIMESLLAAQRYCLLTTCRR 374
+ ++++L +C LT+CRR
Sbjct: 363 HK---LDAMLG---FCELTSCRR 379
>gi|403379590|ref|ZP_10921647.1| ATP-dependent DNA helicase RecQ [Paenibacillus sp. JC66]
Length = 783
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 153/378 (40%), Positives = 223/378 (58%), Gaps = 18/378 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FR Q+ +I R++E +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LQNIFGYKEFRAGQRKIIARLLEGKDTVGIMPTGGGKSICYQIPALVMPGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L GI+A F+ S+ + S + A G ++LL++ PE+ + F +
Sbjct: 69 LMKDQVDALTNLGISAAFINSSLSHSETDQRLRLAAQGEYKLLYVAPER--LDSPRFQAL 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPF----VALTATATEKVRI 177
+ V L A+DEAHC+S+WGHDFR Y+ + TFL +P A TATATE+V
Sbjct: 127 VTMTSVPLIAIDEAHCLSQWGHDFRPSYR---SIVTFLQQLPVRPVVAAFTATATEEVTR 183
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI++ L +K P V I FDR NL ++ RG + D ++ + +G I+Y T
Sbjct: 184 DIVDLLSMKQPQVHITGFDRANLTL---LVRRGVNKTDYILNHLANHPGESG--IIYAST 238
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K+V+E+ + L + G+ AG YH M + R+++ F+ DE ++MVAT AFGMGIDK +V
Sbjct: 239 RKEVDELHQLLNRKGIAAGRYHAGMSDQERKQSQDSFVYDETQIMVATNAFGMGIDKSNV 298
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGES-QTENQRTAI 356
R+VIHY PK +ESYYQE+GR GRDG C L ++ + F +S E++++
Sbjct: 299 RYVIHYNMPKNMESYYQEAGRAGRDGEPGECVLLFSPQDIMTQKFLIEQSVADESRKSNE 358
Query: 357 MESLLAAQRYCLLTTCRR 374
+ L YC C R
Sbjct: 359 YKKLQTMIDYCYTQQCLR 376
>gi|365961574|ref|YP_004943141.1| ATP-dependent DNA helicase RecQ1 [Flavobacterium columnare ATCC
49512]
gi|365738255|gb|AEW87348.1| ATP-dependent DNA helicase RecQ1 [Flavobacterium columnare ATCC
49512]
Length = 731
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 152/355 (42%), Positives = 221/355 (62%), Gaps = 13/355 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LKKYFG+S F+ Q+ V++ I+ + + V+M TG GKSLCYQLP L+ A+VVSPLI+
Sbjct: 12 LKKYFGFSQFKGLQEQVVKSIVSRENTFVIMPTGGGKSLCYQLPALIQEGVAIVVSPLIA 71
Query: 65 LMQDQVMSLKQRGIN---AEFLGSAQTDSSV-QTKAE--TGYFQLLFMTPEKACIIPISF 118
LM++QV +L+ G A L S+ + + Q K + +G+ +LL++ PE + +
Sbjct: 72 LMKNQVDALRSLGSGDAIAHVLNSSLNKTEINQVKKDIASGFTKLLYVAPE--SLTKEEY 129
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
L + + A+DEAHCISEWGHDFR EY+ L + L +P + LTATAT KV+ D
Sbjct: 130 IDFLKEHKISFVAIDEAHCISEWGHDFRPEYRNLRNIIRALGEIPIIGLTATATPKVQED 189
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ +L++ + V ASF+R NLFY V+ + V+ + +K G +I YC++
Sbjct: 190 ILKNLEMSDANVFKASFNRPNLFYEVRTKTKN---VEADIIRFIKQHKGKSGVI-YCLSR 245
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K VEEI++ LK G+ A YH + +K R + +F+ +E+ V+VAT+AFGMGIDKPDVR
Sbjct: 246 KKVEEIAEVLKVNGISAVPYHAGLDAKTRAKHQDMFLMEEVDVVVATIAFGMGIDKPDVR 305
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD-FYCGESQTENQ 352
VIH+ PK+LESYYQE+GR GRDG C YY+ + K + F G+ E +
Sbjct: 306 FVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDVEKLEKFMAGKPIAEQE 360
>gi|440748399|ref|ZP_20927652.1| ATP-dependent DNA helicase RecQ [Mariniradius saccharolyticus AK6]
gi|436483223|gb|ELP39291.1| ATP-dependent DNA helicase RecQ [Mariniradius saccharolyticus AK6]
Length = 725
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 159/378 (42%), Positives = 236/378 (62%), Gaps = 18/378 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LKK FG++ FR Q+ ++ ++ R+ V+M TG+GKSLCYQ P +V+ TA+V+SPLI+
Sbjct: 9 LKKIFGFNNFRGNQEPIVGNVLIGRNTFVIMPTGAGKSLCYQFPAVVSEGTAIVISPLIA 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSV-QTKAE--TGYFQLLFMTPEKACIIPISFWSK 121
LM++QV L G+NA FL S S + + K E +G +LL++ PE + +
Sbjct: 69 LMKNQVDQLNAFGVNAYFLNSTLNKSEITKVKKEVLSGKTKLLYVAPE--SLTKDENIAF 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFL--LG--VPFVALTATATEKVRI 177
L +A + A+DEAHCISEWGHDFR EY+ K+++ + +G +P VALTATAT KV+
Sbjct: 127 LKEAKLSFVAIDEAHCISEWGHDFRPEYR---KIKSIIGQIGPELPIVALTATATPKVQQ 183
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI +L+++ + +SF+R NLFY V+ + ++ + + + +KS G II YC++
Sbjct: 184 DIQRNLQMEEADIFKSSFNRPNLFYEVRPKVKNET--KKAIIKYIKSQKGKSGII-YCLS 240
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K VEEI++ LK G+ A YH + R + F+ +EI V+VAT+AFGMGIDKPDV
Sbjct: 241 RKKVEEIAELLKVNGISAAPYHAGLDQAVRIKNQDDFLNEEIDVIVATIAFGMGIDKPDV 300
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD-FYCGESQTENQRTAI 356
R+VIHY PK+LE YYQE+GR GRDG+ C ++Y + K + F + TE + +
Sbjct: 301 RYVIHYDVPKSLEGYYQETGRAGRDGLEGHCLMFYRYDDIIKLEKFNKDKPVTERENAKV 360
Query: 357 MESLLAAQRYCLLTTCRR 374
+ +AA Y + CRR
Sbjct: 361 LLEEMAA--YAESSMCRR 376
>gi|284006614|emb|CBA71875.1| ATP-dependent DNA helicase [Arsenophonus nasoniae]
Length = 608
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 156/373 (41%), Positives = 220/373 (58%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+ +I I+ K+DCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQQIFGYQQFRPGQEQIINTILTKQDCLVVMPTGGGKSLCYQIPALILPGLTIVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L Q GI A +L S+QT + E G +LL++ PE+ ++ +F +
Sbjct: 77 LMKDQVDQLSQYGIEASYLNSSQTGQQQKQVIEYCRQGKIKLLYIAPER--LVMDNFLDR 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L K L AVDEAHCIS+WGHDFR EY+ L +LR +P +ALTATA + R DII+
Sbjct: 135 LPKLNPVLLAVDEAHCISQWGHDFRPEYRALGQLRRRFSQLPVIALTATADQTTRNDIIH 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L+L P V I+SFDR N+ Y + +D+L I +G IVYC +
Sbjct: 195 GLELCEPLVHISSFDRPNIRY---TLVEKYKPLDQLWFFIKGQKGNSG--IVYCNSRSKA 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
EE ++ L + G+ A YH + + R + F +D+++V+VAT+AFGMGI+K +VR V+
Sbjct: 250 EETAERLHKRGLSAAAYHAGLDNTQRAKVQDAFQKDDLQVVVATVAFGMGINKSNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ + +ESYYQE+GR GRDG+A+ L+Y ++ + E + L
Sbjct: 310 HFDIARNIESYYQETGRAGRDGLAAEAILFYDPADLSWLRRCLAEKPAGQLQEIERHKLN 369
Query: 362 AAQRYCLLTTCRR 374
A + TCRR
Sbjct: 370 AMSAFAEAQTCRR 382
>gi|421126850|ref|ZP_15587075.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
serovar Grippotyphosa str. 2006006986]
gi|410435705|gb|EKP84836.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
serovar Grippotyphosa str. 2006006986]
Length = 624
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 161/380 (42%), Positives = 226/380 (59%), Gaps = 15/380 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKT-ALVVSPL 62
TLKK +G S FR QK+ I+ ++ +D L ++ TG GKSL YQ P ++ + LV+SPL
Sbjct: 15 TLKKKWGLSKFRSGQKNAIESLMAGKDTLAILPTGGGKSLIYQFPAVLDETSLTLVISPL 74
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFW 119
I+LM+DQV SLK +GI AE+ S Q D + ++A TG ++L+++PEKA +
Sbjct: 75 IALMKDQVDSLKAKGIAAEYCNSTQDDLEQLRILSRAVTGKIRILYLSPEKA--LGRQVL 132
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR-TFLLGVPFVALTATATEKVRID 178
L K + AVDEAHC+S+WGHDFR EY+++ +LR + +P +ALTATAT +V D
Sbjct: 133 EILPKFPLARIAVDEAHCVSQWGHDFRPEYRKIHELREKYPKSIPVIALTATATSRVIKD 192
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKV----INRGQSFVDELVQEILKSVAGAGSIIVY 234
I +SL LKNP + SF R+NL + V+ I+R + L Q + ++ +G IVY
Sbjct: 193 ISDSLGLKNPILIKGSFYRENLSFSVRFPQNEISRENELLKLLAQGNFQKIS-SGRAIVY 251
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C T + VE + LK+ G K G YH +RE A + + ++VAT AFGMG+D+
Sbjct: 252 CATRQKVESVYGFLKKNGFKVGKYHAGRTDSSRERAQDGYNNGKTNILVATNAFGMGLDQ 311
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
PDVR VIHY P +LESYYQE+GR GRDG S C L+Y S+ F G+ EN R
Sbjct: 312 PDVRLVIHYQIPASLESYYQEAGRAGRDGKPSDCILFYHPSDLVTQGFIIGK---ENNRK 368
Query: 355 AIMESLLAAQRYCLLTTCRR 374
L + Y + CR+
Sbjct: 369 GGETLLSHLKEYSISNKCRQ 388
>gi|417769518|ref|ZP_12417434.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
serovar Pomona str. Pomona]
gi|418705908|ref|ZP_13266761.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
serovar Hebdomadis str. R499]
gi|418712605|ref|ZP_13273339.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
str. UI 08452]
gi|409948668|gb|EKN98656.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
serovar Pomona str. Pomona]
gi|410764437|gb|EKR35151.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
serovar Hebdomadis str. R499]
gi|410790897|gb|EKR84584.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
str. UI 08452]
Length = 624
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 161/380 (42%), Positives = 226/380 (59%), Gaps = 15/380 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKT-ALVVSPL 62
TLKK +G S FR QK+ I+ ++ +D L ++ TG GKSL YQ P ++ + LV+SPL
Sbjct: 15 TLKKKWGLSKFRSGQKNAIESLMAGKDTLAILPTGGGKSLIYQFPAVLDETSLTLVISPL 74
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFW 119
I+LM+DQV SLK +GI AE+ S Q D + ++A TG ++L+++PEKA +
Sbjct: 75 IALMKDQVDSLKAKGIAAEYCNSTQDDLEQLRILSRAVTGKIRILYLSPEKA--LGRQVL 132
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR-TFLLGVPFVALTATATEKVRID 178
L K + AVDEAHC+S+WGHDFR EY+++ +LR + +P +ALTATAT +V D
Sbjct: 133 EILPKFPLARIAVDEAHCVSQWGHDFRPEYRKIHELREKYPKSIPVIALTATATSRVIKD 192
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKV----INRGQSFVDELVQEILKSVAGAGSIIVY 234
I +SL LKNP + SF R+NL + V+ I+R + L Q + ++ +G IVY
Sbjct: 193 ISDSLGLKNPILIKGSFYRENLSFSVRFPQNEISRENELLKLLAQGNFQKIS-SGRAIVY 251
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C T + VE + LK+ G K G YH +RE A + + ++VAT AFGMG+D+
Sbjct: 252 CATRQKVESVYGFLKKNGFKVGKYHAGRTDSSRERAQDGYNNGKTNILVATNAFGMGLDQ 311
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
PDVR VIHY P +LESYYQE+GR GRDG S C L+Y S+ F G+ EN R
Sbjct: 312 PDVRLVIHYQIPASLESYYQEAGRAGRDGKPSDCVLFYHPSDLVTQGFIIGK---ENNRK 368
Query: 355 AIMESLLAAQRYCLLTTCRR 374
L + Y + CR+
Sbjct: 369 GGETLLSHLKEYSISNKCRQ 388
>gi|418681397|ref|ZP_13242627.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
serovar Pomona str. Kennewicki LC82-25]
gi|418731207|ref|ZP_13289620.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
str. UI 12758]
gi|421117177|ref|ZP_15577546.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
serovar Canicola str. Fiocruz LV133]
gi|400326881|gb|EJO79140.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
serovar Pomona str. Kennewicki LC82-25]
gi|410011306|gb|EKO69428.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
serovar Canicola str. Fiocruz LV133]
gi|410774102|gb|EKR54121.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
str. UI 12758]
gi|455669700|gb|EMF34765.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
serovar Pomona str. Fox 32256]
Length = 631
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 161/380 (42%), Positives = 226/380 (59%), Gaps = 15/380 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKT-ALVVSPL 62
TLKK +G S FR QK+ I+ ++ +D L ++ TG GKSL YQ P ++ + LV+SPL
Sbjct: 22 TLKKKWGLSKFRSGQKNAIESLMAGKDTLAILPTGGGKSLIYQFPAVLDETSLTLVISPL 81
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFW 119
I+LM+DQV SLK +GI AE+ S Q D + ++A TG ++L+++PEKA +
Sbjct: 82 IALMKDQVDSLKAKGIAAEYCNSTQDDLEQLRILSRAVTGKIRILYLSPEKA--LGRQVL 139
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR-TFLLGVPFVALTATATEKVRID 178
L K + AVDEAHC+S+WGHDFR EY+++ +LR + +P +ALTATAT +V D
Sbjct: 140 EILPKFPLARIAVDEAHCVSQWGHDFRPEYRKIHELREKYPKSIPVIALTATATSRVIKD 199
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKV----INRGQSFVDELVQEILKSVAGAGSIIVY 234
I +SL LKNP + SF R+NL + V+ I+R + L Q + ++ +G IVY
Sbjct: 200 ISDSLGLKNPILIKGSFYRENLSFSVRFPQNEISRENELLKLLAQGNFQKIS-SGRAIVY 258
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C T + VE + LK+ G K G YH +RE A + + ++VAT AFGMG+D+
Sbjct: 259 CATRQKVESVYGFLKKNGFKVGKYHAGRTDSSRERAQDGYNNGKTNILVATNAFGMGLDQ 318
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
PDVR VIHY P +LESYYQE+GR GRDG S C L+Y S+ F G+ EN R
Sbjct: 319 PDVRLVIHYQIPASLESYYQEAGRAGRDGKPSDCVLFYHPSDLVTQGFIIGK---ENNRK 375
Query: 355 AIMESLLAAQRYCLLTTCRR 374
L + Y + CR+
Sbjct: 376 GGETLLSHLKEYSISNKCRQ 395
>gi|440712393|ref|ZP_20893014.1| ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQ
[Rhodopirellula baltica SWK14]
gi|436442914|gb|ELP36007.1| ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQ
[Rhodopirellula baltica SWK14]
Length = 745
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 153/367 (41%), Positives = 221/367 (60%), Gaps = 21/367 (5%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
S L+ +GY FRP Q D +Q +I+ RD LVV+ TG GKSLCYQ+P LV ++VVSPL
Sbjct: 26 SVLRSVWGYDSFRPLQADAVQDVIQGRDSLVVLPTGGGKSLCYQVPALVRDGMSVVVSPL 85
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET------GYFQLLFMTPEKACIIPI 116
ISLM+DQV +L G++A + S Q SV+ K ET G ++L++ PE+ + P
Sbjct: 86 ISLMKDQVDALTSNGVSAALVNSTQ---SVEQKRETAERLRRGEIKILYLAPER-LLTPK 141
Query: 117 SFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
+ L + FA+DEAHC+S WGHDFR EY+ L L+ A TATA+E+VR
Sbjct: 142 TL-DFLRSLPISFFAIDEAHCVSNWGHDFRPEYRGLRILKEQFPSASVHAFTATASEQVR 200
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DI L+L P + + FDR NL Y + R ++++ Q I + +G +VYC+
Sbjct: 201 DDIAEQLQLNQPNILVGDFDRPNLTYRML---RADGKLNQIQQCIAQHPGESG--VVYCI 255
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
T K+VE+ + AL+ +GV+ YH + + R+ FI++++ V+VAT+AFGMGIDK +
Sbjct: 256 TRKEVEQTAAALESMGVRTLPYHAGLPDEVRQANQEAFIQEKVDVIVATVAFGMGIDKSN 315
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIH G PK++E Y QESGR GRDG+A+ C L + + GD + EN +
Sbjct: 316 VRFVIHAGMPKSIEHYQQESGRAGRDGLAAECILLH-----SGGDLMSWKRILENGDRSN 370
Query: 357 MESLLAA 363
+S +A+
Sbjct: 371 FQSAMAS 377
>gi|418742803|ref|ZP_13299172.1| ATP-dependent DNA helicase, RecQ family [Leptospira kirschneri
serovar Valbuzzi str. 200702274]
gi|410749546|gb|EKR06530.1| ATP-dependent DNA helicase, RecQ family [Leptospira kirschneri
serovar Valbuzzi str. 200702274]
Length = 621
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 164/379 (43%), Positives = 226/379 (59%), Gaps = 15/379 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKT-ALVVSPLI 63
LKK +G FR QK+ I+ +I +D L ++ TG GKSL YQ P ++ + LV+SPLI
Sbjct: 16 LKKKWGLPKFRSGQKEAIESLISGKDTLAILPTGGGKSLIYQFPTILDETSLTLVISPLI 75
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFWS 120
+LM+DQV SLK +GI AE+ S Q D + ++A TG ++L+++PEKA +
Sbjct: 76 ALMKDQVDSLKAKGIAAEYCNSTQDDLEQLRILSRAVTGKIRILYLSPEKA--LGRQVLE 133
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR-TFLLGVPFVALTATATEKVRIDI 179
L K + AVDEAHC+S+WGHDFR EY++L KLR + +P VALTATAT +V DI
Sbjct: 134 ILPKFPLARIAVDEAHCVSQWGHDFRPEYRKLYKLRDKYPKPIPVVALTATATSRVIKDI 193
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKV----INRGQSFVDELVQEILKSVAGAGSIIVYC 235
+SL LKNP + SF R+NL + V+ I+R + LVQ + V+ +G +IVYC
Sbjct: 194 SDSLGLKNPILIKGSFYRENLSFSVRFPQNEISRENELLKLLVQGNFQKVS-SGRVIVYC 252
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
T + VE + LK+ G K G YH +RE+ + + V+VAT AFGMG+D+P
Sbjct: 253 ATRQKVETVYGFLKKNGFKVGKYHAGRTDSSREKTQDGYNNGKTNVLVATNAFGMGLDQP 312
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTA 355
+VR VIHY P +LESYYQE+GR GRDG S C L+Y S+ F G+ EN R
Sbjct: 313 NVRLVIHYQIPASLESYYQEAGRAGRDGKPSDCVLFYHPSDLVTQGFIIGK---ENNRKG 369
Query: 356 IMESLLAAQRYCLLTTCRR 374
L + Y + CR+
Sbjct: 370 GETLLSHLKEYSISNKCRQ 388
>gi|357008934|ref|ZP_09073933.1| putative ATP-dependent DNA helicase [Paenibacillus elgii B69]
Length = 686
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 158/373 (42%), Positives = 227/373 (60%), Gaps = 12/373 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+KY+GY FR QK VI+ ++ RD L +M TG GKS+CYQ+P L+ T +VVSPLIS
Sbjct: 103 LRKYYGYPDFRDGQKQVIESLLSGRDTLGIMPTGGGKSICYQVPALMMDGTTIVVSPLIS 162
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQT---KAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A ++ S+ + + V+ KAE G ++LL++ PE+ + F
Sbjct: 163 LMKDQVDGLDSIGVPAAYINSSLSYAQVEMRIRKAERGEYKLLYVAPER--LESERFLEL 220
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVA-LTATATEKVRIDII 180
L V + AVDEAHC+S+WGHDFR Y ++++L + L P +A TATAT++VR DI+
Sbjct: 221 LSGLVVPMVAVDEAHCVSQWGHDFRPSYMRINELVSHLPDRPLLAAFTATATDQVREDIV 280
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
LKL P V + F R+NL + V +G++ D L+ I + AG IVY T K+
Sbjct: 281 KHLKLSEPQVFVTGFARENLSFSVI---KGENKRDVLMGYIREHAGEAG--IVYAATRKE 335
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV AG YH + K R +A F+ DE+RVMVA+ AFGMGIDK +VR+V
Sbjct: 336 VDQLCEYLLRQGVAAGKYHAGLTDKERADAQERFLYDEVRVMVASNAFGMGIDKSNVRYV 395
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI-MES 359
+H+ PK +E+YYQE+GR GRDG S C L ++ + F +S ++ +R A
Sbjct: 396 VHFNMPKNMEAYYQEAGRAGRDGEPSDCMLLFSPQDIHIQKFLIEQSVSDPERQAQEYRR 455
Query: 360 LLAAQRYCLLTTC 372
L YC C
Sbjct: 456 LQQMADYCHTPQC 468
>gi|375086937|ref|ZP_09733329.1| ATP-dependent DNA helicase RecQ [Megamonas funiformis YIT 11815]
gi|374563652|gb|EHR34963.1| ATP-dependent DNA helicase RecQ [Megamonas funiformis YIT 11815]
Length = 589
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 152/377 (40%), Positives = 227/377 (60%), Gaps = 16/377 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+K++GY FRP QK V++ ++ K D + +M TG+GKS+C+Q+P L+ LV+SPLIS
Sbjct: 10 LQKFYGYEDFRPGQKKVVESLLNKNDTVAIMPTGAGKSICFQIPALLFEGVTLVISPLIS 69
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKAC--IIPISFW 119
LM+DQV SL+Q GI A ++ S+ + + + + G+++++++ PE+ +P SF
Sbjct: 70 LMKDQVDSLRQLGIAAVYINSSVSKAQLYKDLQDISAGFYKIIYIAPERLTSEYLPDSFK 129
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRID 178
+ + + AVDEAHC+S+WGHDFR Y+ + L P + A TATAT +V+ D
Sbjct: 130 N----LNISMVAVDEAHCLSQWGHDFRPSYRNILNFTNSLRIKPIISAFTATATPEVKTD 185
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
IIN L LK P V + FDR NL++ V RG+ ++ + K AG I+Y T
Sbjct: 186 IINLLGLKQPNVFVTGFDRPNLYFSVL---RGEVKDKFVIDYVKKHQDEAG--IIYVGTR 240
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
KDV+ + L+ G+KAG YH M + R + F+ D + VMVAT AFGMGIDKP+VR
Sbjct: 241 KDVDALQVLLEIKGIKAGRYHAGMTDEERNQMQEDFLYDNLSVMVATNAFGMGIDKPNVR 300
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGES-QTENQRTAIM 357
+VIHY PK +E+YYQE+GR GRDG++ C L Y+ + F +S ++E ++
Sbjct: 301 YVIHYNMPKNMEAYYQEAGRAGRDGLSGNCILLYSPQDTQLQKFLISKSTESEIRQQLEY 360
Query: 358 ESLLAAQRYCLLTTCRR 374
+ L + YC C R
Sbjct: 361 KRLQSMVDYCHTPQCLR 377
>gi|417300406|ref|ZP_12087617.1| ATP-dependent DNA helicase RecQ [Rhodopirellula baltica WH47]
gi|327543280|gb|EGF29713.1| ATP-dependent DNA helicase RecQ [Rhodopirellula baltica WH47]
Length = 745
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 153/367 (41%), Positives = 221/367 (60%), Gaps = 21/367 (5%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
S L+ +GY FRP Q D +Q +I+ RD LVV+ TG GKSLCYQ+P LV ++VVSPL
Sbjct: 26 SVLRSVWGYDSFRPLQADAVQDVIQGRDSLVVLPTGGGKSLCYQVPALVRDGMSVVVSPL 85
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET------GYFQLLFMTPEKACIIPI 116
ISLM+DQV +L G++A + S Q SV+ K ET G ++L++ PE+ + P
Sbjct: 86 ISLMKDQVDALTSNGVSAALVNSTQ---SVEQKRETAERIRRGEIKILYLAPER-LLTPK 141
Query: 117 SFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
+ L + FA+DEAHC+S WGHDFR EY+ L L+ A TATA+E+VR
Sbjct: 142 TL-DFLRSLPISFFAIDEAHCVSNWGHDFRPEYRGLRILKEQFPSASVHAFTATASEQVR 200
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DI L+L P + + FDR NL Y + R ++++ Q I + +G +VYC+
Sbjct: 201 DDIAEQLQLNQPNILVGDFDRPNLTYRML---RADGKLNQIQQCIAQHPGESG--VVYCI 255
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
T K+VE+ + AL+ +GV+ YH + + R+ FI++++ V+VAT+AFGMGIDK +
Sbjct: 256 TRKEVEQTAAALESMGVRTLPYHAGLPDEVRQANQEAFIQEKVDVIVATVAFGMGIDKSN 315
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIH G PK++E Y QESGR GRDG+A+ C L + + GD + EN +
Sbjct: 316 VRFVIHAGMPKSIEHYQQESGRAGRDGLAAECILLH-----SGGDLMSWKRILENGDRSN 370
Query: 357 MESLLAA 363
+S +A+
Sbjct: 371 FQSAMAS 377
>gi|148978460|ref|ZP_01814934.1| ATP-dependent DNA helicase RecQ [Vibrionales bacterium SWAT-3]
gi|145962367|gb|EDK27647.1| ATP-dependent DNA helicase RecQ [Vibrionales bacterium SWAT-3]
Length = 612
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 147/375 (39%), Positives = 224/375 (59%), Gaps = 10/375 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ L+ FGY FR Q++VI ++ RD LV+M TG GKSLCYQ+P LV LV+SPL
Sbjct: 19 NILEDVFGYQSFRDGQQEVIDLAVQGRDSLVIMPTGGGKSLCYQIPALVREGLTLVISPL 78
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLM+DQV LK G+ AE + S+ SV + +G ++++++PE+ ++ F
Sbjct: 79 ISLMKDQVDQLKANGVAAECINSSMPRDQLLSVFNRMNSGQLKMVYVSPER--VLMRDFI 136
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L + + AVDEAHCIS+WGHDFR EY L +L+ + VP++ALTATA + R DI
Sbjct: 137 ERLQGLPLSMIAVDEAHCISQWGHDFRPEYASLGQLKQYFPHVPYMALTATADDATRKDI 196
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
++ L+L +P+ + SFDR N+ Y + ++ V ++V+ + G I+YC + K
Sbjct: 197 VSRLQLVDPHTYLGSFDRPNIRYNLVEKHKP---VSQVVRYLETQKGNCG--IIYCGSRK 251
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
VE +++ L G++A YH M + R F RD+I+++VAT+AFGMGI+KP+VR
Sbjct: 252 KVEMVTEKLCNNGIRAAGYHAGMDTDERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRF 311
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V+H+ P+ +ESYYQE+GR GRDG+ + + + ++ E + Q+ M
Sbjct: 312 VVHFDIPRNIESYYQETGRAGRDGLPAEAMMLFDPADMGWLRRMLDEKEEGPQKQVEMHK 371
Query: 360 LLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 372 LNAMSAFAEAQTCRR 386
>gi|298376827|ref|ZP_06986782.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 3_1_19]
gi|298266705|gb|EFI08363.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 3_1_19]
Length = 611
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 160/370 (43%), Positives = 215/370 (58%), Gaps = 15/370 (4%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQ 69
GY+ FRP Q D+IQRI++K D LV+M TG GKS+C+QLP + TALVVSPLI+LM+DQ
Sbjct: 13 GYTSFRPLQADIIQRILQKEDSLVLMPTGGGKSICFQLPAIYLPGTALVVSPLIALMKDQ 72
Query: 70 VMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFWSKLLKAG 126
V L GI A L S + Q + G +LL+++PE+ + F +L
Sbjct: 73 VEGLIANGIPAAALNSMMPEEEQQQVKQLCVQGKIKLLYISPERIKMEADWFLPRL---D 129
Query: 127 VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLK 186
+ L A+DEAHC+S WGHDFR EY QL L+ VP VALTATA + R DI+ L+L+
Sbjct: 130 ISLIAIDEAHCVSHWGHDFRPEYTQLAILKERFPKVPVVALTATADKITRKDILEQLRLR 189
Query: 187 NPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG--AGSIIVYCMTIKDVEEI 244
P I+SFDR N+ V+ RG + E + I+ + G S I+YCM D E+
Sbjct: 190 EPQTFISSFDRPNISLTVR---RGLN-KKEKIAAIVHFIRGHREQSGIIYCMRRNDTTEL 245
Query: 245 SKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYG 304
+ L +KA YH + RE+A FI D + V+ AT+AFGMGIDK +VR V+HY
Sbjct: 246 ADELAMYNIKAIAYHAGLLPAQREQAQNDFINDRVDVVCATVAFGMGIDKSNVRWVVHYS 305
Query: 305 CPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLLAAQ 364
P ++E+YYQE GR GRDG+ S L+Y+ S+ + ES Q +E L +
Sbjct: 306 MPGSIENYYQEIGRAGRDGMKSDALLFYSLSDLIVLRRFAEES---GQSEVNLEKLNRMR 362
Query: 365 RYCLLTTCRR 374
RYC CRR
Sbjct: 363 RYCESDMCRR 372
>gi|90581058|ref|ZP_01236858.1| putative ATP-dependent DNA helicase RecQ [Photobacterium angustum
S14]
gi|90437754|gb|EAS62945.1| putative ATP-dependent DNA helicase RecQ [Vibrio angustum S14]
Length = 616
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 150/377 (39%), Positives = 219/377 (58%), Gaps = 14/377 (3%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
S L++ FGY FR Q DVI + DCLV+M TG GKSLCYQ+P L+ LV+SPL
Sbjct: 20 SVLQEIFGYQQFRVGQLDVIDAVNRDEDCLVIMPTGGGKSLCYQIPALLKEGITLVISPL 79
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQT---KAETGYFQLLFMTPEKACIIPISFW 119
ISLM+DQV LK G+ A ++ S + T + +L++++PE+ ++ F
Sbjct: 80 ISLMKDQVDQLKANGVAAAYINSTMERDEILTVFNAMKDATVKLVYVSPER--VLTYDFI 137
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L + + AVDEAHCIS+WGHDFR EY L +L+ +P +ALTATA E R DI
Sbjct: 138 DRLRDVPLAMVAVDEAHCISQWGHDFRPEYAALGRLKQSFENLPIMALTATADETTRHDI 197
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSI--IVYCMT 237
I+ L L+ P+ + SFDR N+ Y + ++ + +I++ V G I+YC +
Sbjct: 198 ISRLGLQTPHEYLGSFDRPNIRYTLWEKHKP-------LTQIIRYVEGMRGQCGIIYCNS 250
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K VE+IS+ L+ G++A YH + R F RD+I ++VAT+AFGMGI+KP+V
Sbjct: 251 RKKVEQISEKLRDKGIRAEAYHAGLDHIERANVQEAFQRDDIHIVVATVAFGMGINKPNV 310
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R+V+H+ P+ +ESYYQE+GR GRDG+ + ++Y S+ A E + Q+
Sbjct: 311 RYVVHFDIPRNIESYYQETGRAGRDGLPAEAVMFYDPSDLAWLRRCLDEKEEGQQKDVER 370
Query: 358 ESLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 371 HKLHAMGAFAEAQTCRR 387
>gi|317488471|ref|ZP_07947022.1| ATP-dependent DNA helicase RecQ [Eggerthella sp. 1_3_56FAA]
gi|325831979|ref|ZP_08165076.1| ATP-dependent DNA helicase RecQ [Eggerthella sp. HGA1]
gi|316912403|gb|EFV33961.1| ATP-dependent DNA helicase RecQ [Eggerthella sp. 1_3_56FAA]
gi|325486300|gb|EGC88752.1| ATP-dependent DNA helicase RecQ [Eggerthella sp. HGA1]
Length = 681
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 156/384 (40%), Positives = 223/384 (58%), Gaps = 18/384 (4%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
LK++FGY FRP Q+ V++ I+ +RD L VM TG+GKS+CYQ+P +V ALVVSPL+
Sbjct: 10 ALKQHFGYEAFRPGQEGVVEAILGRRDALAVMPTGAGKSVCYQVPGVVMDGLALVVSPLV 69
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM DQV +L GI +L S T S+V +A G +Q++++ PE+ + F
Sbjct: 70 SLMGDQVRALLDAGIRGAYLNSTLTPGQQSTVLRRALDGAYQIMYVAPER--LADPRFLE 127
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATE-KVRIDI 179
+A + L AVDEAHC+S+WG DFR Y + L P VA +VR DI
Sbjct: 128 FAQRAAIPLVAVDEAHCVSQWGQDFRPSYLTIGDFIAQLPNRPVVAAFTATATARVRADI 187
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+ L L++PY + FDR NL++GV+ ++ + + + L+ +G IVYC T K
Sbjct: 188 VRLLDLRDPYEVVTGFDRPNLYFGVERLDPKRK-IARIAGYALEHAGDSG--IVYCSTRK 244
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
D +++ AL + GV+A YH M + R E+ FI D+ VMVAT AFGMGIDK +VR+
Sbjct: 245 DTDKVHAALLEEGVRAARYHAGMSAADRAESQSAFIADDAPVMVATNAFGMGIDKSNVRY 304
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYC-GESQTENQRTAIME 358
VIH+ P ++E+YYQE+GR GRDG S C LY++ + + F+ ES E E
Sbjct: 305 VIHHNMPGSIEAYYQEAGRAGRDGEPSTCLLYWSDGDVSTCRFFIEQESGNEELSPEEAE 364
Query: 359 SLLAAQR--------YCLLTTCRR 374
++ A++R YC T C R
Sbjct: 365 AVRASRRRLLAAMTGYCHTTGCLR 388
>gi|256840070|ref|ZP_05545579.1| ATP-dependent DNA helicase RecQ [Parabacteroides sp. D13]
gi|423331701|ref|ZP_17309485.1| ATP-dependent DNA helicase RecQ [Parabacteroides distasonis
CL03T12C09]
gi|256739000|gb|EEU52325.1| ATP-dependent DNA helicase RecQ [Parabacteroides sp. D13]
gi|409229542|gb|EKN22414.1| ATP-dependent DNA helicase RecQ [Parabacteroides distasonis
CL03T12C09]
Length = 611
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 160/370 (43%), Positives = 215/370 (58%), Gaps = 15/370 (4%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQ 69
GY+ FRP Q D+IQRI++K D LV+M TG GKS+C+QLP + TALVVSPLI+LM+DQ
Sbjct: 13 GYTSFRPLQADIIQRILQKEDSLVLMPTGGGKSICFQLPAIYLPGTALVVSPLIALMKDQ 72
Query: 70 VMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFWSKLLKAG 126
V L GI A L S + Q + G +LL+++PE+ + F +L
Sbjct: 73 VEGLIANGIPAAALNSMMPEEEQQQVKQLCVQGKIKLLYISPERIKMEADWFLPRL---D 129
Query: 127 VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLK 186
+ L A+DEAHC+S WGHDFR EY QL L+ VP VALTATA + R DI+ L+L+
Sbjct: 130 ISLIAIDEAHCVSHWGHDFRPEYTQLAILKERFPKVPVVALTATADKITRKDILEQLRLR 189
Query: 187 NPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG--AGSIIVYCMTIKDVEEI 244
P I+SFDR N+ V+ RG + E + I+ + G S I+YCM D E+
Sbjct: 190 TPQTFISSFDRPNISLTVR---RGLN-KKEKIAAIVHFIRGHREQSGIIYCMRRNDTTEL 245
Query: 245 SKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYG 304
+ L +KA YH + RE+A FI D + V+ AT+AFGMGIDK +VR V+HY
Sbjct: 246 ADELAMYNIKAIAYHAGLLPAQREQAQNDFINDRVDVVCATVAFGMGIDKSNVRWVVHYS 305
Query: 305 CPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLLAAQ 364
P ++E+YYQE GR GRDG+ S L+Y+ S+ + ES Q +E L +
Sbjct: 306 MPGSIENYYQEIGRAGRDGMKSDALLFYSLSDLIVLRRFAEES---GQSEVNLEKLNRMR 362
Query: 365 RYCLLTTCRR 374
RYC CRR
Sbjct: 363 RYCESDMCRR 372
>gi|421137016|ref|ZP_15597110.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
serovar Grippotyphosa str. Andaman]
gi|410018759|gb|EKO85590.1| ATP-dependent DNA helicase, RecQ family [Leptospira interrogans
serovar Grippotyphosa str. Andaman]
Length = 631
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 161/380 (42%), Positives = 226/380 (59%), Gaps = 15/380 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKT-ALVVSPL 62
TLKK +G S FR QK+ I+ ++ +D L ++ TG GKSL YQ P ++ + LV+SPL
Sbjct: 22 TLKKKWGLSKFRSGQKNAIESLMAGKDTLAILPTGGGKSLIYQFPAVLDETSLTLVISPL 81
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFW 119
I+LM+DQV SLK +GI AE+ S Q D + ++A TG ++L+++PEKA +
Sbjct: 82 IALMKDQVDSLKAKGIAAEYCNSTQDDLEQLRILSRAVTGKIRILYLSPEKA--LGRQVL 139
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR-TFLLGVPFVALTATATEKVRID 178
L K + AVDEAHC+S+WGHDFR EY+++ +LR + +P +ALTATAT +V D
Sbjct: 140 EILPKFPLARIAVDEAHCVSQWGHDFRPEYRKIHELREKYPKSIPVIALTATATSRVIKD 199
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKV----INRGQSFVDELVQEILKSVAGAGSIIVY 234
I +SL LKNP + SF R+NL + V+ I+R + L Q + ++ +G IVY
Sbjct: 200 ISDSLGLKNPILIKGSFYRENLSFSVRFPQNEISRENELLKLLAQGNFQKIS-SGRAIVY 258
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C T + VE + LK+ G K G YH +RE A + + ++VAT AFGMG+D+
Sbjct: 259 CATRQKVESVYGFLKKNGFKVGKYHAGRTDSSRERAQDGYNNGKTNILVATNAFGMGLDQ 318
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
PDVR VIHY P +LESYYQE+GR GRDG S C L+Y S+ F G+ EN R
Sbjct: 319 PDVRLVIHYQIPASLESYYQEAGRAGRDGKPSDCILFYHPSDLVTQGFIIGK---ENNRK 375
Query: 355 AIMESLLAAQRYCLLTTCRR 374
L + Y + CR+
Sbjct: 376 GGETLLSHLKEYSISNKCRQ 395
>gi|238789392|ref|ZP_04633178.1| ATP-dependent DNA helicase recQ [Yersinia frederiksenii ATCC 33641]
gi|238722535|gb|EEQ14189.1| ATP-dependent DNA helicase recQ [Yersinia frederiksenii ATCC 33641]
Length = 610
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 154/373 (41%), Positives = 222/373 (59%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FRP Q+++I + +DCLVVM TG GKSLCYQ+P LVT LVVSPLIS
Sbjct: 17 LRDTFGYQQFRPGQQEIINATLAGQDCLVVMPTGGGKSLCYQIPALVTDGLTLVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S+QT +V +G +LL++ PE+ ++ SF +
Sbjct: 77 LMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQIKLLYIAPER--LVMESFLDQ 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + L AVDEAHCIS+WGHDFR EY+ L +L+ +P +ALTATA E R DI+
Sbjct: 135 LHQWRPGLLAVDEAHCISQWGHDFRPEYRALGQLKQRFPDLPVIALTATADEATRGDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L P + ++SFDR N+ Y ++ + + +D+L + + +G I+YC + V
Sbjct: 195 LLNLDQPLIQVSSFDRPNIRY--TLVEKFKP-LDQLWRFVQDQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ YH + ++ R + F RD+++V+VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+T+ESYYQE+GR GRDG+ + L Y ++ A E Q+ L
Sbjct: 310 HFDIPRTIESYYQETGRAGRDGLPAEAMLLYDPADMAWLRRCLEEKPAGAQQDIERHKLN 369
Query: 362 AAQRYCLLTTCRR 374
A + TCRR
Sbjct: 370 AMGAFAEAQTCRR 382
>gi|322834919|ref|YP_004214946.1| ATP-dependent DNA helicase RecQ [Rahnella sp. Y9602]
gi|384260143|ref|YP_005404077.1| ATP-dependent DNA helicase RecQ [Rahnella aquatilis HX2]
gi|321170120|gb|ADW75819.1| ATP-dependent DNA helicase RecQ [Rahnella sp. Y9602]
gi|380756119|gb|AFE60510.1| ATP-dependent DNA helicase RecQ [Rahnella aquatilis HX2]
Length = 610
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 151/373 (40%), Positives = 217/373 (58%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FRP Q+ +I + RDCLVVM TG GKSLCYQ+P LV LVVSPLIS
Sbjct: 17 LRDTFGYQQFRPGQQTIINTALSGRDCLVVMPTGGGKSLCYQIPALVMDGLTLVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S QT V G ++L++ PE+ ++ F +
Sbjct: 77 LMKDQVDQLMAAGVEAGCLNSTQTREQQLEVMAGCRAGRIKMLYIAPER--LMMGDFLEQ 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY+ L +L+ +P +ALTATA E R DI+
Sbjct: 135 LQQWNPAMLAVDEAHCISQWGHDFRPEYRALGQLKLRYPQLPVIALTATADEATRNDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L+L +P + ++SFDR N+ Y ++ + + D+L++ + +G I+YC + V
Sbjct: 195 LLELNDPLIQVSSFDRPNIRY--TLVEKFKPL-DQLIRFVQDQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ G YH + + R F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSRGLSVGAYHAGLDNDTRARVQEGFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+T+ESYYQE+GR GRDG+ + L Y ++ A E Q+ L
Sbjct: 310 HFDIPRTIESYYQETGRAGRDGLPAEAVLLYDPADMAWLRRCLEEKPAGAQQDVERHKLN 369
Query: 362 AAQRYCLLTTCRR 374
A + TCRR
Sbjct: 370 AMNAFAEAQTCRR 382
>gi|197364742|ref|YP_002144379.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|56130069|gb|AAV79575.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197096219|emb|CAR61816.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
Length = 609
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 220/375 (58%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+ +I + RDCLVVM TG GKSLCYQ+P L+ +VVSPLI
Sbjct: 16 VLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLI 75
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q+ V TG +LL++ PE+ ++ +F
Sbjct: 76 SLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQIRLLYIAPER--LMLDNFLD 133
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DII
Sbjct: 134 HLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTTRQDII 193
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 194 RLLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 248
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 249 VEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 308
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I
Sbjct: 309 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPAGQLQDIERHK 367
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 368 LNAMGAFAEAQTCRR 382
>gi|417951017|ref|ZP_12594128.1| ATP-dependent DNA helicase RecQ [Vibrio splendidus ATCC 33789]
gi|342805457|gb|EGU40720.1| ATP-dependent DNA helicase RecQ [Vibrio splendidus ATCC 33789]
Length = 612
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 147/375 (39%), Positives = 224/375 (59%), Gaps = 10/375 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ L+ FGY FR Q++VI ++ RD LV+M TG GKSLCYQ+P LV LV+SPL
Sbjct: 19 NILEDVFGYQSFRDGQQEVIDLAVQGRDSLVIMPTGGGKSLCYQIPALVREGLTLVISPL 78
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLM+DQV LK G+ AE + S+ SV + +G ++++++PE+ ++ F
Sbjct: 79 ISLMKDQVDQLKANGVAAECINSSMPRDQLLSVFNRMNSGQLKMVYVSPER--VLMRDFI 136
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L + + AVDEAHCIS+WGHDFR EY L +L+ + VP++ALTATA + R DI
Sbjct: 137 ERLQGLPLSMIAVDEAHCISQWGHDFRPEYASLGQLKQYFPHVPYMALTATADDATRKDI 196
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
++ L+L +P+ + SFDR N+ Y + ++ V ++V+ + G I+YC + K
Sbjct: 197 VSRLQLVDPHTYLGSFDRPNIRYNLVEKHKP---VSQVVRYLETQKGNCG--IIYCGSRK 251
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
VE +++ L G++A YH M + R F RD+I+++VAT+AFGMGI+KP+VR
Sbjct: 252 KVEMVTEKLCNNGIRAAGYHAGMDTDERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRF 311
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V+H+ P+ +ESYYQE+GR GRDG+ + + + ++ E + Q+ M
Sbjct: 312 VVHFDIPRNIESYYQETGRAGRDGLPAEAMMLFDPADMGWLRRMLDEKEEGPQKQVEMHK 371
Query: 360 LLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 372 LNAMSAFAEAQTCRR 386
>gi|420248062|ref|ZP_14751435.1| ATP-dependent DNA helicase RecQ [Burkholderia sp. BT03]
gi|398069383|gb|EJL60741.1| ATP-dependent DNA helicase RecQ [Burkholderia sp. BT03]
Length = 615
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 155/382 (40%), Positives = 227/382 (59%), Gaps = 17/382 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTAL----VVS 60
L + FGY FR Q ++++ + DCLV+M TG GKSLCYQ+P LV + L VVS
Sbjct: 8 LNEVFGYPAFRGQQGEIVEHVSSGGDCLVLMPTGGGKSLCYQIPSLVRREAGLGAGIVVS 67
Query: 61 PLISLMQDQVMSLKQRGINAEFLGS--AQTDSSVQTKA-ETGYFQLLFMTPEKACIIPIS 117
PLI+LMQDQV +L++ G+ A +L S + D++ +A G LL++ PE+ ++
Sbjct: 68 PLIALMQDQVAALREVGVRAAYLNSTLSGADAAATERALREGEIDLLYVAPER--LMTPR 125
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
F + +A + LFA+DEAHC+S+WGHDFR EY QL L VP +ALTATA R
Sbjct: 126 FLDLIERARIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPSVPRIALTATADAITRD 185
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQS-FVDELVQEILKSVAGAGSIIVYCM 236
+II+ L L + V ++SFDR N+ Y + + +S +D + E ++ + +VYC+
Sbjct: 186 EIIHRLALDDARVFVSSFDRPNIRYRIVEKDNARSQLLDFIRAEHTRTDGTTDAGVVYCL 245
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ + VEE ++ LK GV+A YH M + R+ +F R+E VM AT+AFGMGIDKPD
Sbjct: 246 SRRKVEETAEWLKGQGVRALPYHAGMEFEVRQRHQEMFQREEGVVMCATIAFGMGIDKPD 305
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ---- 352
VR V H PK++E YYQE+GR GRDG+ + W+ Y + + ES+ ++
Sbjct: 306 VRFVAHLDLPKSVEGYYQETGRAGRDGLPANAWMTYGLGDVVQQRKMIDESEADDAHKRV 365
Query: 353 RTAIMESLLAAQRYCLLTTCRR 374
+T +++LL C TCRR
Sbjct: 366 QTGKLDALLG---LCEAATCRR 384
>gi|260775110|ref|ZP_05884009.1| ATP-dependent DNA helicase RecQ [Vibrio coralliilyticus ATCC
BAA-450]
gi|260609027|gb|EEX35187.1| ATP-dependent DNA helicase RecQ [Vibrio coralliilyticus ATCC
BAA-450]
Length = 611
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 150/379 (39%), Positives = 226/379 (59%), Gaps = 18/379 (4%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
S L+ FGY FR Q++VI+ + +D LV+M TG GKSLCYQ+P LV G LV+SPL
Sbjct: 18 SILEDVFGYQSFRDGQQEVIEAAVNGQDSLVIMPTGGGKSLCYQVPALVRGGLTLVISPL 77
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLM+DQV LK G++AE + S+ SV + ++G +L++++PE+ ++ F
Sbjct: 78 ISLMKDQVDQLKANGVSAECVNSSMPRDELISVYNRMQSGQLKLVYVSPER--VLMRDFI 135
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L + + AVDEAHCIS+WGHDFR EY L +++ VPF+ALTATA + R DI
Sbjct: 136 ERLESLSLSMIAVDEAHCISQWGHDFRPEYASLGQIKQHFPHVPFMALTATADDATRNDI 195
Query: 180 INSLKLKNPYVTIASFDRKNLFYGV----KVINRGQSFVDELVQEILKSVAGAGSIIVYC 235
++ L+L P++ ++SFDR N+ Y + K I++ F+D K G I+YC
Sbjct: 196 MHRLQLNEPHIHLSSFDRPNIRYTLVEKHKPISQVIRFLD-----TQKGNCG----IIYC 246
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
+ K VE +++ L ++A +YH + + R F RD+I+++VAT+AFGMGI+KP
Sbjct: 247 GSRKKVEMVTEKLCNNHIRAASYHAGLEADERAYVQEAFQRDDIQIVVATVAFGMGINKP 306
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTA 355
+VR V+H+ P+ +ESYYQE+GR GRDG+ + + Y ++ + E Q+
Sbjct: 307 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGPQKQV 366
Query: 356 IMESLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 367 EAHKLNAMSAFAEAQTCRR 385
>gi|255013487|ref|ZP_05285613.1| putative ATP-dependent DNA helicase [Bacteroides sp. 2_1_7]
gi|410103659|ref|ZP_11298580.1| ATP-dependent DNA helicase RecQ [Parabacteroides sp. D25]
gi|409236388|gb|EKN29195.1| ATP-dependent DNA helicase RecQ [Parabacteroides sp. D25]
Length = 611
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 160/370 (43%), Positives = 215/370 (58%), Gaps = 15/370 (4%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQ 69
GY+ FRP Q D+IQRI++K D LV+M TG GKS+C+QLP + TALVVSPLI+LM+DQ
Sbjct: 13 GYTSFRPLQADIIQRILQKEDSLVLMPTGGGKSICFQLPAIYLPGTALVVSPLIALMKDQ 72
Query: 70 VMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFWSKLLKAG 126
V L GI A L S + Q + G +LL+++PE+ + F +L
Sbjct: 73 VEGLIANGIPAAALNSMMPEEEQQQVKQLCVQGKIKLLYISPERIKMEADWFLPRL---D 129
Query: 127 VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLK 186
+ L A+DEAHC+S WGHDFR EY QL L+ VP VALTATA + R DI+ L+L+
Sbjct: 130 ISLIAIDEAHCVSHWGHDFRPEYTQLAILKERFPKVPVVALTATADKITRKDILEQLRLR 189
Query: 187 NPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG--AGSIIVYCMTIKDVEEI 244
P I+SFDR N+ V+ RG + E + I+ + G S I+YCM D E+
Sbjct: 190 TPQTFISSFDRPNISLTVR---RGLN-KKEKIAAIVHFIRGHREQSGIIYCMRRNDTTEL 245
Query: 245 SKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYG 304
+ L +KA YH + RE+A FI D + V+ AT+AFGMGIDK +VR V+HY
Sbjct: 246 ADELAMYNIKAIAYHAGLLPAQREQAQNDFINDRVDVVCATVAFGMGIDKSNVRWVVHYS 305
Query: 305 CPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLLAAQ 364
P ++E+YYQE GR GRDG+ S L+Y+ S+ + ES Q +E L +
Sbjct: 306 MPGSIENYYQEIGRAGRDGMKSDALLFYSLSDLIVLRRFAEES---GQSEVNLEKLNRMR 362
Query: 365 RYCLLTTCRR 374
RYC CRR
Sbjct: 363 RYCESDMCRR 372
>gi|417361770|ref|ZP_12135584.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Give str. S5-487]
gi|353583121|gb|EHC43574.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Give str. S5-487]
Length = 609
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 220/375 (58%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+ +I + RDCLVVM TG GKSLCYQ+P L+ +VVSPLI
Sbjct: 16 VLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLI 75
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q+ V TG +LL++ PE+ ++ +F
Sbjct: 76 SLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQIRLLYIAPER--LMLDNFLD 133
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DII
Sbjct: 134 HLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTTRQDII 193
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 194 RLLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 248
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 249 VEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 308
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I
Sbjct: 309 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPAGQLQDIERHK 367
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 368 LNAMGAFAEAQTCRR 382
>gi|390567610|ref|ZP_10247937.1| ATP-dependent DNA helicase RecQ [Burkholderia terrae BS001]
gi|389940427|gb|EIN02229.1| ATP-dependent DNA helicase RecQ [Burkholderia terrae BS001]
Length = 615
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 156/382 (40%), Positives = 226/382 (59%), Gaps = 17/382 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTAL----VVS 60
L + FGY FR Q ++++ + DCLV+M TG GKSLCYQ+P LV + L VVS
Sbjct: 8 LNEVFGYPAFRGQQGEIVEHVSSGGDCLVLMPTGGGKSLCYQIPSLVRREAGLGAGIVVS 67
Query: 61 PLISLMQDQVMSLKQRGINAEFLGS--AQTDSSVQTKA-ETGYFQLLFMTPEKACIIPIS 117
PLI+LMQDQV +L++ G+ A +L S + D++ +A G LL++ PE+ ++
Sbjct: 68 PLIALMQDQVAALREVGVRAAYLNSTLSGADAAATERALREGEIDLLYVAPER--LMTPR 125
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
F + +A + LFA+DEAHC+S+WGHDFR EY QL L VP +ALTATA R
Sbjct: 126 FLDLIERARIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPSVPRIALTATADAITRD 185
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYG-VKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
+II+ L L + V ++SFDR N+ Y V+ N +D + E ++ + +VYC+
Sbjct: 186 EIIHRLALDDARVFVSSFDRPNIRYRIVEKDNARSQLLDFIRAEHTRTDGTTDAGVVYCL 245
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ + VEE ++ LK GV+A YH M + R+ +F R+E VM AT+AFGMGIDKPD
Sbjct: 246 SRRKVEETAEWLKGQGVRALPYHAGMEFEVRQRHQEMFQREEGVVMCATIAFGMGIDKPD 305
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ---- 352
VR V H PK++E YYQE+GR GRDG+ + W+ Y + + ES+ ++
Sbjct: 306 VRFVAHLDLPKSVEGYYQETGRAGRDGLPANAWMTYGLGDVVQQRKMIDESEADDAHKRV 365
Query: 353 RTAIMESLLAAQRYCLLTTCRR 374
+T +++LL C TCRR
Sbjct: 366 QTGKLDALLG---LCEAATCRR 384
>gi|168700649|ref|ZP_02732926.1| ATP-dependent DNA helicase RecQ [Gemmata obscuriglobus UQM 2246]
Length = 741
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 156/381 (40%), Positives = 221/381 (58%), Gaps = 15/381 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ +++++G++ RP Q+ I+ ++ +RD LVV+ TG GKSLC+Q P +V G +VVS
Sbjct: 11 LFDAVQRHWGFASLRPLQEHAIRAVLNRRDSLVVLPTGGGKSLCFQAPAVVQGGLTIVVS 70
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPIS 117
PLI+LM+DQV L + G+ A L S T + E TG +L+F +PE+ ++
Sbjct: 71 PLIALMKDQVDGLTRIGVPAARLDSTLTAAERAATFEGIRTGTTRLVFTSPER--LVNTE 128
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
+ L A AVDEAHC+S WGHDFR EY+QL ++R F A TATATE+VR
Sbjct: 129 IFRLLQSANTHTIAVDEAHCVSHWGHDFRPEYRQLARMREFFPKASVHAYTATATEQVRR 188
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DII L L+ P + + SFDR NL + +V+ R + V+E++ G I VYC+
Sbjct: 189 DIIQQLNLRQPEIHVGSFDRPNLTF--RVLPRVEMHAQ--VREVIDRHPGDAGI-VYCLR 243
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
KDV+E+ ALK G +A YH M + AR F +E V+VAT+AFGMGID+ +V
Sbjct: 244 KKDVDEMCAALKAAGYRAVPYHAGMENAARRATQDAFAAEEADVVVATVAFGMGIDRSNV 303
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTA-- 355
R VIH PKT+E Y QE+GR GRDG+ S C L+Y+ +F + +S E +A
Sbjct: 304 RFVIHAAMPKTIEHYQQETGRAGRDGLESECVLFYSGQDFLSLKWMIEKSGEEGGASAEY 363
Query: 356 ---IMESLLAAQRYCLLTTCR 373
++ L RYC CR
Sbjct: 364 VATSVKHLEEMARYCRGAVCR 384
>gi|395804511|ref|ZP_10483749.1| ATP-dependent DNA helicase RecQ [Flavobacterium sp. F52]
gi|395433398|gb|EJF99353.1| ATP-dependent DNA helicase RecQ [Flavobacterium sp. F52]
Length = 768
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 148/376 (39%), Positives = 227/376 (60%), Gaps = 17/376 (4%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+TLK+ FG+ FRP Q+ +I I+ +D L +M TG GKS+C+QLP L+ +V+SPL
Sbjct: 8 ATLKENFGFEKFRPNQETIINTILSGQDALAIMPTGGGKSICFQLPALILPGITIVISPL 67
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQ---TKAETGYFQLLFMTPEKACIIPISFW 119
I+LM+DQV SLK GI+A ++ S Q+ Q ++ +F+L+++ PE + ++F
Sbjct: 68 IALMKDQVDSLKTNGISACYINSTQSSQEQQYYIDNLKSNHFKLVYVAPESLSYLDMAF- 126
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
S+L + L A+DEAHCIS WGHDFR Y L L++ P +ALTATA + R DI
Sbjct: 127 SEL---NISLIAIDEAHCISSWGHDFRPAYTNLGYLKSRFPSTPILALTATADKATRTDI 183
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVK-VINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
L LKNP IASFDRKNL V+ ++R + +D + + S I+YC++
Sbjct: 184 SKQLNLKNPKTFIASFDRKNLSLEVRPALDRVKQIIDFIENK------PNESGIIYCLSR 237
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K EE+++ L++ G++A YH + ++ R + FI D+ +V+ AT+AFGMGIDK +VR
Sbjct: 238 KATEELAEKLRKNGIEAKAYHAGLDNETRAKTQDQFINDDCQVVCATIAFGMGIDKSNVR 297
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
VIHY PK +E YYQE GR GRDG+ + L+ + ++ + + E + + A ++
Sbjct: 298 WVIHYNLPKNIEGYYQEIGRAGRDGLPAETVLFESYADVIQLQKFASEGLNSDIQLAKLD 357
Query: 359 SLLAAQRYCLLTTCRR 374
+ ++Y +CRR
Sbjct: 358 RM---KQYADAVSCRR 370
>gi|197120051|ref|YP_002140478.1| ATP-dependent DNA helicase RecQ [Geobacter bemidjiensis Bem]
gi|197089411|gb|ACH40682.1| ATP-dependent DNA helicase RecQ [Geobacter bemidjiensis Bem]
Length = 599
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 151/376 (40%), Positives = 220/376 (58%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L FG+ FR Q+++++ ++ RD V+M TG GKSLCYQ+P L TALV+SP
Sbjct: 6 IQILNDVFGFKSFRSPQQEIVETVLSGRDAFVLMPTGGGKSLCYQVPALCFPGTALVISP 65
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV +L++ GI+A SA ++ V + G +LL++ PE+ ++ F
Sbjct: 66 LISLMKDQVDALRENGISAACYNSALGEAEARRVLAQLHAGELKLLYVAPER--LLSDGF 123
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
++ + + LFA+DEAHC+S+WGHDFR EY QL LR +P +ALTATA + R D
Sbjct: 124 LERIKQLPISLFAIDEAHCVSQWGHDFRPEYAQLGVLREIFPEIPMIALTATADAQTRGD 183
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I++ L L+ A FDR N+ Y VI++ + F +L + AG IVY ++
Sbjct: 184 ILSRLGLQGATCYCAGFDRPNIRY--SVIDKNKPF-SQLTGFLSSRKDEAG--IVYALSR 238
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K VEE++K L G+KA YH + K R F++D+I+++VAT+AFGMGIDK +VR
Sbjct: 239 KRVEEVAKKLCAAGIKAAAYHAGLPDKERHRVQDAFLKDDIKIVVATVAFGMGIDKSNVR 298
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+HY PK++ESYYQE+GR GRDG+ + L + + A G Q +
Sbjct: 299 FVVHYDMPKSIESYYQETGRAGRDGLPADALLLFGYGDVAVARGLIGNGGNAEQNRIELH 358
Query: 359 SLLAAQRYCLLTTCRR 374
L + TCRR
Sbjct: 359 KLNCMIGFAEAQTCRR 374
>gi|417377000|ref|ZP_12146033.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Inverness str. R8-3668]
gi|353591293|gb|EHC49598.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Inverness str. R8-3668]
Length = 609
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 220/375 (58%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+ +I + RDCLVVM TG GKSLCYQ+P L+ +VVSPLI
Sbjct: 16 VLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLI 75
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q+ V TG +LL++ PE+ ++ +F
Sbjct: 76 SLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQIRLLYIAPER--LMLDNFLD 133
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DII
Sbjct: 134 HLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTTRQDII 193
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 194 RLLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 248
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 249 VEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 308
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I
Sbjct: 309 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPAGQLQDIERHK 367
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 368 LNAMGAFAEAQTCRR 382
>gi|329297040|ref|ZP_08254376.1| ATP-dependent DNA helicase RecQ [Plautia stali symbiont]
Length = 607
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 146/341 (42%), Positives = 209/341 (61%), Gaps = 18/341 (5%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FRP Q+ +I+ + RDCLVVM TG GKSLCYQ+P LV LVVSPLIS
Sbjct: 17 LQDTFGYQQFRPGQQTIIETALSGRDCLVVMPTGGGKSLCYQIPALVREGLTLVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQ---TKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S QT Q +G +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLLANGVAAACLNSTQTREQQQQVFADCRSGKLRLLYIAPER--LMMDNFLDT 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + AVDEAHCIS+WGHDFR EY L +LR +L +P +ALTATA E R DI++
Sbjct: 135 LQHWNPVMLAVDEAHCISQWGHDFRPEYGALGQLRQRILQLPVMALTATADEATRNDIVH 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDEL--VQEILKSVAG--AGSIIVYCMT 237
L++ +P + I+SFDR N+ Y + V++ +++L+ V S I+YC +
Sbjct: 195 LLQMHDPLIQISSFDRPNIRY---------TLVEKFKPTEQLLRYVQDQRGKSGIIYCNS 245
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
VE+ + L+ G+ G YH + S+ R F RD+++++VAT+AFGMGI+KP+V
Sbjct: 246 RAKVEDTAARLQSRGISVGAYHAGIDSEQRARVQEAFQRDDLQIVVATVAFGMGINKPNV 305
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
R V+H+ P+ +ESYYQE+GR GRDG+ + + Y ++ A
Sbjct: 306 RFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMA 346
>gi|312795768|ref|YP_004028690.1| ATP-dependent DNA helicase recQ [Burkholderia rhizoxinica HKI 454]
gi|312167543|emb|CBW74546.1| ATP-dependent DNA helicase recQ (EC 3.6.1.-) [Burkholderia
rhizoxinica HKI 454]
Length = 636
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 159/385 (41%), Positives = 226/385 (58%), Gaps = 17/385 (4%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTAL---- 57
++ LK+ FGY FR Q D+++ + D LV+M TG GKSLCYQ+P LV + L
Sbjct: 25 LALLKEVFGYPAFRGPQADIVEHVAAGHDSLVLMPTGGGKSLCYQIPALVRHEAGLGAGI 84
Query: 58 VVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACII 114
VVSPLI+LMQDQV +L + G+ A ++ SA T + G QLL++ PE+ ++
Sbjct: 85 VVSPLIALMQDQVAALTEAGVRAAYVNSALTAAEAAATERAFARGELQLLYVAPER--LL 142
Query: 115 PISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEK 174
F L ++ + LFA+DEAHC+S+WGHDFR EY QL L VP +ALTATA
Sbjct: 143 TARFLELLARSRIGLFAIDEAHCVSQWGHDFRPEYMQLSALHERFPQVPRIALTATADAL 202
Query: 175 VRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGA-GSIIV 233
R +II L L N V I+SFDR N+ Y + + ++ + + ++ +V G S IV
Sbjct: 203 TREEIIERLALNNARVFISSFDRPNIRYRIVEKDNARTQLLDFIRAEHTNVDGTTDSGIV 262
Query: 234 YCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGID 293
YC++ + VEE + L Q G++A YH M ++ R+ ++F +E VM AT+AFGMGID
Sbjct: 263 YCLSRRKVEETADWLVQQGLRALPYHAGMDAQLRQRHQQVFQHEEGVVMCATIAFGMGID 322
Query: 294 KPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ- 352
KPDVR V H PK++E YYQE+GR GRDG+AS W+ Y + + ES+ +
Sbjct: 323 KPDVRFVAHLDLPKSIEGYYQETGRAGRDGLASNAWMAYGLGDVVQQRKMIDESEADELH 382
Query: 353 ---RTAIMESLLAAQRYCLLTTCRR 374
+TA +++LL C CRR
Sbjct: 383 KRVQTAKLDALLG---LCETAGCRR 404
>gi|194469151|ref|ZP_03075135.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|416649609|ref|ZP_11809981.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|418492957|ref|ZP_13059431.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|418496841|ref|ZP_13063270.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|418499706|ref|ZP_13066110.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|418506075|ref|ZP_13072415.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|418526484|ref|ZP_13092460.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
gi|194455515|gb|EDX44354.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|366054478|gb|EHN18832.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|366056408|gb|EHN20732.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|366066485|gb|EHN30652.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|366070443|gb|EHN34553.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|366828694|gb|EHN55575.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|372205603|gb|EHP19111.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
Length = 609
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 220/375 (58%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+ +I + RDCLVVM TG GKSLCYQ+P L+ +VVSPLI
Sbjct: 16 VLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLI 75
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q+ V TG +LL++ PE+ ++ +F
Sbjct: 76 SLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQIRLLYIAPER--LMLDNFLD 133
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DII
Sbjct: 134 HLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTTRQDII 193
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 194 RLLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 248
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 249 VEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 308
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I
Sbjct: 309 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPAGQLQDIERHK 367
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 368 LNAMGAFAEAQTCRR 382
>gi|150007804|ref|YP_001302547.1| ATP-dependent DNA helicase [Parabacteroides distasonis ATCC 8503]
gi|149936228|gb|ABR42925.1| putative ATP-dependent DNA helicase [Parabacteroides distasonis
ATCC 8503]
Length = 611
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 160/370 (43%), Positives = 215/370 (58%), Gaps = 15/370 (4%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQ 69
GY+ FRP Q D+IQRI++K D LV+M TG GKS+C+QLP + TALVVSPLI+LM+DQ
Sbjct: 13 GYTSFRPLQADIIQRILQKEDSLVLMPTGGGKSICFQLPAIYLPGTALVVSPLIALMKDQ 72
Query: 70 VMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFWSKLLKAG 126
V L GI A L S + Q + G +LL+++PE+ + F +L
Sbjct: 73 VEGLIANGIPAAALNSMMPEEEQQQVKQLCVQGKIKLLYISPERIKMEADWFLPRL---D 129
Query: 127 VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLK 186
+ L A+DEAHC+S WGHDFR EY QL L+ VP VALTATA + R DI+ L+L+
Sbjct: 130 ISLIAIDEAHCVSHWGHDFRPEYTQLAILKERFPKVPVVALTATADKITRKDILEQLRLR 189
Query: 187 NPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG--AGSIIVYCMTIKDVEEI 244
P I+SFDR N+ V+ RG + E + I+ + G S I+YCM D E+
Sbjct: 190 TPQTFISSFDRPNISLTVR---RGLN-KKEKIAAIVHFIRGHREQSGIIYCMRRNDTTEL 245
Query: 245 SKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYG 304
+ L +KA YH + RE+A FI D + V+ AT+AFGMGIDK +VR V+HY
Sbjct: 246 ADELAMYNIKAIAYHAGLLPAQREQAQNDFINDRVDVVCATVAFGMGIDKSNVRWVVHYS 305
Query: 305 CPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLLAAQ 364
P ++E+YYQE GR GRDG+ S L+Y+ S+ + ES Q +E L +
Sbjct: 306 MPGSIENYYQEIGRAGRDGMKSDTLLFYSLSDLIVLRRFAEES---GQSEVNLEKLNRMR 362
Query: 365 RYCLLTTCRR 374
RYC CRR
Sbjct: 363 RYCESDMCRR 372
>gi|262381687|ref|ZP_06074825.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 2_1_33B]
gi|262296864|gb|EEY84794.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 2_1_33B]
Length = 611
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 160/370 (43%), Positives = 215/370 (58%), Gaps = 15/370 (4%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQ 69
GY+ FRP Q D+IQRI++K D LV+M TG GKS+C+QLP + TALVVSPLI+LM+DQ
Sbjct: 13 GYTSFRPLQADIIQRILQKEDSLVLMPTGGGKSICFQLPAIYLPGTALVVSPLIALMKDQ 72
Query: 70 VMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFWSKLLKAG 126
V L GI A L S + Q + G +LL+++PE+ + F +L
Sbjct: 73 VEGLIANGIPAAALNSMMPEEEQQQVKQLCVQGKIKLLYISPERIKMEADWFLPRL---D 129
Query: 127 VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLK 186
+ L A+DEAHC+S WGHDFR EY QL L+ VP VALTATA + R DI+ L+L+
Sbjct: 130 ISLIAIDEAHCVSHWGHDFRPEYTQLAILKERFPKVPVVALTATADKITRKDILEQLRLR 189
Query: 187 NPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG--AGSIIVYCMTIKDVEEI 244
P I+SFDR N+ V+ RG + E + I+ + G S I+YCM D E+
Sbjct: 190 TPQTFISSFDRPNISLTVR---RGLN-KKEKIAAIVHFIRGHREQSGIIYCMRRNDTTEL 245
Query: 245 SKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYG 304
+ L +KA YH + RE+A FI D + V+ AT+AFGMGIDK +VR V+HY
Sbjct: 246 ADELAMYNIKAIAYHAGLLPAQREQAQNDFINDRVDVVCATVAFGMGIDKSNVRWVVHYS 305
Query: 305 CPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLLAAQ 364
P ++E+YYQE GR GRDG+ S L+Y+ S+ + ES Q +E L +
Sbjct: 306 MPGSIENYYQEIGRAGRDGMKSDALLFYSLSDLIVLRRFAEES---GQSEVNLEKLNRMR 362
Query: 365 RYCLLTTCRR 374
RYC CRR
Sbjct: 363 RYCESDMCRR 372
>gi|340382611|ref|XP_003389812.1| PREDICTED: Werner syndrome ATP-dependent helicase homolog
[Amphimedon queenslandica]
Length = 1072
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 148/315 (46%), Positives = 193/315 (61%), Gaps = 14/315 (4%)
Query: 34 VMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQ 93
+ +TG GKSLCYQ P + +LV+SPLISLM+DQV L R I + FLGSAQ D +
Sbjct: 215 IFSTGYGKSLCYQYPAVYCNGLSLVISPLISLMEDQVTQLNVRNIPSCFLGSAQFDEAAA 274
Query: 94 TKA-ETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQL 152
K +G ++LF+TPE A F K G+ L A+DEAHC+S+WGHDFR Y++L
Sbjct: 275 KKNILSGNIRVLFITPEYADRGNKFFIEVCEKVGITLVAIDEAHCVSQWGHDFRDSYRRL 334
Query: 153 DKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQS 212
+R + VP +ALTATAT VR DII+SL+L NP + SFDR NL+ IN
Sbjct: 335 GNIRQHIPNVPLLALTATATPAVRKDIISSLRLTNPLMVTTSFDRPNLYIE---INPKSG 391
Query: 213 FVDELVQEILKSVAGA----------GSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQM 262
E + +L + G IVYC EEI+ LK +GV GTYH +
Sbjct: 392 LPSEDFKPLLLATKDPATNRTVHSFEGPTIVYCRKKAVTEEITSVLKSMGVSCGTYHADI 451
Query: 263 GSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRD 322
K R+E H F+RDE++ +VAT+AFGMGIDKPDVR +IHY P+ +E YYQE GR GRD
Sbjct: 452 PLKERKEVHHKFLRDELQCVVATIAFGMGIDKPDVRLIIHYSAPQDIECYYQEIGRAGRD 511
Query: 323 GIASVCWLYYARSNF 337
G S C+++Y+ S+F
Sbjct: 512 GSPSKCYMFYSDSDF 526
>gi|381179157|ref|ZP_09888016.1| ATP-dependent DNA helicase RecQ [Treponema saccharophilum DSM 2985]
gi|380768920|gb|EIC02900.1| ATP-dependent DNA helicase RecQ [Treponema saccharophilum DSM 2985]
Length = 624
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 155/374 (41%), Positives = 227/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK FGYS FR Q+++I+ ++E RD L VM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 13 LKTVFGYSGFRLQQEEIIRNVLEGRDTLAVMPTGGGKSLCYQIPALIFDGLTVVVSPLIS 72
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIPISFWSK 121
LMQDQV +L+ GI+A FL SA + + ++ G ++++++PE I+
Sbjct: 73 LMQDQVAALRACGIDAVFLNSAVDWAQYRESMDSIRFGTTKIVYVSPEGLATPRINDLLH 132
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
V +DEAHC+S+WGHDFR +Y ++ +R F+ALTATAT+ VR DII
Sbjct: 133 DANVRVRCVTIDEAHCVSQWGHDFRPDYLEISAVRKQFKDAVFLALTATATDVVRNDIIR 192
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
+L L NP V ++SFDR N+F V+ + + +++V+ I + G I+YC + +DV
Sbjct: 193 NLALNNPAVLLSSFDRPNIFLSVQ--QKRKDGFEQIVECIERHKGECG--IIYCFSKRDV 248
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
+ +++ L+ G A YH + ++ R E FIRD++++MVAT+AFGMGI+KPDVR VI
Sbjct: 249 DSLAERLRAEGYSALNYHAGLTNEVRAENQERFIRDDVQIMVATLAFGMGINKPDVRFVI 308
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H PK++E YYQE GR GRDG+ S L Y+ ++ K +S +++ E LL
Sbjct: 309 HQTMPKSVEQYYQEVGRAGRDGLPSEALLLYSGADLFKIRLLFDDSADKDRS----ERLL 364
Query: 362 AAQR-YCLLTTCRR 374
A R + CRR
Sbjct: 365 AGMRTFVTSQVCRR 378
>gi|168233892|ref|ZP_02658950.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|416427302|ref|ZP_11693481.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|416434870|ref|ZP_11697891.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|416436865|ref|ZP_11698533.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|416447482|ref|ZP_11705890.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|416454710|ref|ZP_11710431.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|416457489|ref|ZP_11712204.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|416464152|ref|ZP_11716248.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|416475377|ref|ZP_11720600.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|416489276|ref|ZP_11726106.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|416496572|ref|ZP_11729198.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|416507871|ref|ZP_11735697.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|416517693|ref|ZP_11739594.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|416547105|ref|ZP_11754394.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|416562017|ref|ZP_11761863.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|416572797|ref|ZP_11767461.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|416574873|ref|ZP_11768042.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|416587458|ref|ZP_11776068.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|416594725|ref|ZP_11780542.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|416596084|ref|ZP_11781178.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|416606167|ref|ZP_11787562.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|416613349|ref|ZP_11791983.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|416624004|ref|ZP_11797748.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|416634922|ref|ZP_11802814.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|416639346|ref|ZP_11804480.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|416660772|ref|ZP_11815207.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|416668613|ref|ZP_11819000.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|416678400|ref|ZP_11822627.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|416689502|ref|ZP_11825608.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|416704588|ref|ZP_11830342.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|416710675|ref|ZP_11834703.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|416717787|ref|ZP_11840028.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|416723406|ref|ZP_11844118.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|416728964|ref|ZP_11847700.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|416742430|ref|ZP_11855812.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|416748208|ref|ZP_11858599.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|416759473|ref|ZP_11864304.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|416764210|ref|ZP_11867845.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|416772766|ref|ZP_11873465.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|418486071|ref|ZP_13055045.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|418507163|ref|ZP_13073488.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|205332102|gb|EDZ18866.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|322613033|gb|EFY09984.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322617379|gb|EFY14279.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322625629|gb|EFY22451.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322627052|gb|EFY23845.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322631232|gb|EFY27995.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322638265|gb|EFY34964.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322642799|gb|EFY39386.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322646959|gb|EFY43461.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322650346|gb|EFY46759.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322656363|gb|EFY52657.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322657588|gb|EFY53858.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322665999|gb|EFY62180.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322666738|gb|EFY62915.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322671019|gb|EFY67149.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322679274|gb|EFY75326.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322681678|gb|EFY77705.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322685995|gb|EFY81983.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323192621|gb|EFZ77849.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323196487|gb|EFZ81637.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323203761|gb|EFZ88782.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323210733|gb|EFZ95609.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323215901|gb|EGA00634.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323221394|gb|EGA05812.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323227588|gb|EGA11744.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323231773|gb|EGA15884.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323236188|gb|EGA20265.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323239575|gb|EGA23623.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323244329|gb|EGA28337.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323249574|gb|EGA33486.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323250334|gb|EGA34220.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323256541|gb|EGA40272.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323259761|gb|EGA43394.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323265169|gb|EGA48667.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323268402|gb|EGA51874.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|363553085|gb|EHL37357.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|363559660|gb|EHL43813.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|363572666|gb|EHL56556.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|363573470|gb|EHL57350.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|366054404|gb|EHN18759.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|366081731|gb|EHN45672.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
Length = 615
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 220/375 (58%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+ +I + RDCLVVM TG GKSLCYQ+P L+ +VVSPLI
Sbjct: 22 VLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLI 81
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q+ V TG +LL++ PE+ ++ +F
Sbjct: 82 SLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQIRLLYIAPER--LMLDNFLD 139
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DII
Sbjct: 140 HLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTTRQDII 199
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 200 RLLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 254
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 255 VEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 314
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I
Sbjct: 315 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPAGQLQDIERHK 373
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 374 LNAMGAFAEAQTCRR 388
>gi|452122263|ref|YP_007472511.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
gi|451911267|gb|AGF83073.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
Length = 609
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 220/375 (58%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+ +I + RDCLVVM TG GKSLCYQ+P L+ +VVSPLI
Sbjct: 16 VLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLI 75
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q+ V TG +LL++ PE+ ++ +F
Sbjct: 76 SLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQIRLLYIAPER--LMLDNFLD 133
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DII
Sbjct: 134 HLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTTRQDII 193
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 194 RLLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 248
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 249 VEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 308
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I
Sbjct: 309 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPAGQLQDIERHK 367
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 368 LNAMGAFAEAQTCRR 382
>gi|161617078|ref|YP_001591043.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|195874257|ref|ZP_02701463.2| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|417329973|ref|ZP_12114685.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Adelaide str. A4-669]
gi|417344998|ref|ZP_12125224.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Baildon str. R6-199]
gi|417353823|ref|ZP_12130421.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Gaminara str. A4-567]
gi|417369413|ref|ZP_12140610.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Hvittingfoss str. A4-620]
gi|417387010|ref|ZP_12151555.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Johannesburg str. S5-703]
gi|417437013|ref|ZP_12161716.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Mississippi str. A4-633]
gi|417477588|ref|ZP_12171587.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Rubislaw str. A4-653]
gi|417514692|ref|ZP_12178426.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Senftenberg str. A4-543]
gi|417521684|ref|ZP_12183331.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Uganda str. R8-3404]
gi|417535132|ref|ZP_12188708.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Urbana str. R8-2977]
gi|418818528|ref|ZP_13373999.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|418821071|ref|ZP_13376497.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|421882876|ref|ZP_16314125.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
gi|25290797|pir||AH0917 ATP-dependent DNA helicase (EC 3.6.1.-) [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16504479|emb|CAD07934.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29139300|gb|AAO70867.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|161366442|gb|ABX70210.1| hypothetical protein SPAB_04911 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|195629971|gb|EDX48631.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|353563441|gb|EHC29792.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Adelaide str. A4-669]
gi|353563459|gb|EHC29807.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Gaminara str. A4-567]
gi|353584285|gb|EHC44436.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Hvittingfoss str. A4-620]
gi|353601643|gb|EHC57226.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Johannesburg str. S5-703]
gi|353613150|gb|EHC65322.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Mississippi str. A4-633]
gi|353633055|gb|EHC79959.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Senftenberg str. A4-543]
gi|353637613|gb|EHC83386.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Rubislaw str. A4-653]
gi|353640818|gb|EHC85699.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Uganda str. R8-3404]
gi|353657336|gb|EHC97802.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Urbana str. R8-2977]
gi|357953490|gb|EHJ80012.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Baildon str. R6-199]
gi|379987516|emb|CCF86398.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
gi|392785390|gb|EJA41969.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|392791354|gb|EJA47842.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
Length = 609
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 220/375 (58%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+ +I + RDCLVVM TG GKSLCYQ+P L+ +VVSPLI
Sbjct: 16 VLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLI 75
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q+ V TG +LL++ PE+ ++ +F
Sbjct: 76 SLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQIRLLYIAPER--LMLDNFLD 133
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DII
Sbjct: 134 HLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTTRQDII 193
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 194 RLLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 248
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 249 VEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 308
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I
Sbjct: 309 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPAGQLQDIERHK 367
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 368 LNAMGAFAEAQTCRR 382
>gi|338212508|ref|YP_004656563.1| ATP-dependent DNA helicase RecQ [Runella slithyformis DSM 19594]
gi|336306329|gb|AEI49431.1| ATP-dependent DNA helicase RecQ [Runella slithyformis DSM 19594]
Length = 746
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 159/378 (42%), Positives = 224/378 (59%), Gaps = 19/378 (5%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK+ FGYS FR Q+ +I I+ + V+M TG+GKSLCYQLP + T A+V+SPLI+
Sbjct: 16 LKEIFGYSQFRGEQEAIINSIMGGNNTFVIMPTGAGKSLCYQLPAITTEGIAIVISPLIA 75
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM++QV L GINA+FL S + V+ A G +LL++ PE +
Sbjct: 76 LMKNQVDQLNAFGINAQFLNSTLNKAEINKVKKDALDGTLKLLYIAPE--SLTKEENLDF 133
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQL----DKLRTFLLGVPFVALTATATEKVRI 177
L +A + AVDEAHCISEWGHDFR EY+++ D + L P +ALTATAT KV+
Sbjct: 134 LQRANISFVAVDEAHCISEWGHDFRPEYRRIRGIIDNINPDL---PLIALTATATPKVQQ 190
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI+ +L+++ + SF+RKNL+Y ++ + +L++ I + +G I+YC++
Sbjct: 191 DIVKNLRMEEAAMFKTSFNRKNLYYEIRP--KLADVNKQLIKYIKNNKGKSG--IIYCLS 246
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K VEE++ L VKA YH + S R F+ +E V+VAT+AFGMGIDKPDV
Sbjct: 247 RKTVEEVANLLNVNDVKALPYHAGLDSSTRMHNQDAFLNEEADVIVATIAFGMGIDKPDV 306
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD-FYCGESQTENQRTAI 356
R VIHY PK+LE YYQE+GR GRDG+ C ++Y + K + F +S TE
Sbjct: 307 RFVIHYDAPKSLEGYYQETGRAGRDGLEGNCVMFYCIDDIQKLEKFNKDKSVTERDNARH 366
Query: 357 MESLLAAQRYCLLTTCRR 374
+ + + A Y L CRR
Sbjct: 367 LLNEMVA--YANLGACRR 382
>gi|161936203|ref|YP_152887.2| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
Length = 614
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 220/375 (58%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+ +I + RDCLVVM TG GKSLCYQ+P L+ +VVSPLI
Sbjct: 21 VLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLI 80
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q+ V TG +LL++ PE+ ++ +F
Sbjct: 81 SLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQIRLLYIAPER--LMLDNFLD 138
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DII
Sbjct: 139 HLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTTRQDII 198
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 199 RLLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 253
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 254 VEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 313
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I
Sbjct: 314 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPAGQLQDIERHK 372
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 373 LNAMGAFAEAQTCRR 387
>gi|149178212|ref|ZP_01856806.1| ATP-dependent DNA helicase RecQ [Planctomyces maris DSM 8797]
gi|148842994|gb|EDL57363.1| ATP-dependent DNA helicase RecQ [Planctomyces maris DSM 8797]
Length = 611
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 159/384 (41%), Positives = 220/384 (57%), Gaps = 27/384 (7%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ L +Y+GY+ FRP Q++ + +++ RD LVV+ TG GKSLCYQ P L TA+VVS
Sbjct: 10 LLDVLHEYWGYAEFRPLQQEAMTAVLDDRDSLVVLPTGGGKSLCYQAPALCREGTAVVVS 69
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV +L+ GI+A L S+ + V G +LL++ PE+
Sbjct: 70 PLISLMKDQVDALRVCGISAACLNSSLDQEESRQVLRDVRAGKIKLLYVAPERL------ 123
Query: 118 FWSKLLKAGVCLFA--------VDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTA 169
+L+ +CL A +DEAHC+S WGHDFR Y++L +L+ A TA
Sbjct: 124 ----MLENMLCLLAEINLTYIVIDEAHCVSMWGHDFRPHYRELSELKNIFPQCGIHAYTA 179
Query: 170 TATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAG 229
TATE+VR DI L LK P + I SFDR NL Y V R F V +L G
Sbjct: 180 TATEEVRSDIAVQLGLKTPEILIGSFDRPNLTYSVA--RRADRF--NQVCAVLDRHPGEP 235
Query: 230 SIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFG 289
+I YC++ DVE +S++L G + YH + + R FI+D + V+VAT+AFG
Sbjct: 236 GVI-YCISRADVESLSESLNDAGYETRPYHAGLEDRERAANQEAFIQDRVDVIVATIAFG 294
Query: 290 MGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQT 349
MGIDKP+VR+VIH G PK+LE+Y QESGR GRDG+ + C L Y+ + E Q
Sbjct: 295 MGIDKPNVRYVIHAGLPKSLENYQQESGRAGRDGLEAECVLLYSEQDAMIWKRIL-EDQP 353
Query: 350 ENQRTAIMESLLAAQRYCLLTTCR 373
+ + + ++SL A Q YC CR
Sbjct: 354 DESKASALQSLQAMQNYCHAFDCR 377
>gi|301310160|ref|ZP_07216099.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 20_3]
gi|423336401|ref|ZP_17314148.1| ATP-dependent DNA helicase RecQ [Parabacteroides distasonis
CL09T03C24]
gi|300831734|gb|EFK62365.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 20_3]
gi|409240876|gb|EKN33650.1| ATP-dependent DNA helicase RecQ [Parabacteroides distasonis
CL09T03C24]
Length = 611
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 160/370 (43%), Positives = 215/370 (58%), Gaps = 15/370 (4%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQ 69
GY+ FRP Q D+IQRI++K D LV+M TG GKS+C+QLP + TALVVSPLI+LM+DQ
Sbjct: 13 GYTSFRPLQADIIQRILQKEDSLVLMPTGGGKSICFQLPAIYLPGTALVVSPLIALMKDQ 72
Query: 70 VMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFWSKLLKAG 126
V L GI A L S + Q + G +LL+++PE+ + F +L
Sbjct: 73 VEGLIANGIPAAALNSMMPEEEQQQVKQLCVQGKIKLLYISPERIKMEADWFLPRL---D 129
Query: 127 VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLK 186
+ L A+DEAHC+S WGHDFR EY QL L+ VP VALTATA + R DI+ L+L+
Sbjct: 130 ISLIAIDEAHCVSHWGHDFRPEYTQLAILKERFPKVPVVALTATADKITRKDILEQLRLR 189
Query: 187 NPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG--AGSIIVYCMTIKDVEEI 244
P I+SFDR N+ V+ RG + E + I+ + G S I+YCM D E+
Sbjct: 190 TPQTFISSFDRPNISLTVR---RGLN-KKEKIAAIVHFIRGHREQSGIIYCMRRNDTTEL 245
Query: 245 SKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYG 304
+ L +KA YH + RE+A FI D + V+ AT+AFGMGIDK +VR V+HY
Sbjct: 246 ADELAMYNIKAIAYHAGLLPAQREQAQNDFINDRVDVVCATVAFGMGIDKSNVRWVVHYS 305
Query: 305 CPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLLAAQ 364
P ++E+YYQE GR GRDG+ S L+Y+ S+ + ES Q +E L +
Sbjct: 306 MPGSIENYYQEIGRAGRDGMKSDTLLFYSLSDLIVLRRFAEES---GQSEVNLEKLNRMR 362
Query: 365 RYCLLTTCRR 374
RYC CRR
Sbjct: 363 RYCESDMCRR 372
>gi|254230201|ref|ZP_04923594.1| ATP-dependent DNA helicase RecQ [Vibrio sp. Ex25]
gi|151937286|gb|EDN56151.1| ATP-dependent DNA helicase RecQ [Vibrio sp. Ex25]
Length = 633
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 149/373 (39%), Positives = 218/373 (58%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FR Q++VI+ IE +D LV+M TG GKSLCYQ+P LV LV+SPLIS
Sbjct: 42 LEEVFGYQTFRDGQQEVIEAAIEGKDSLVIMPTGGGKSLCYQIPALVRSGITLVISPLIS 101
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV LK G+ AE + S SV + +G +L++++PE+ ++ F +
Sbjct: 102 LMKDQVDQLKANGVAAECVNSTMNREELLSVYNRMHSGQLKLVYVSPER--VLMRDFIER 159
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +L+ VPF+ALTATA + R DI+
Sbjct: 160 LENLPLSMIAVDEAHCISQWGHDFRPEYAALGQLKQHFSHVPFMALTATADDATRRDILE 219
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L+L P V + SFDR N+ Y + V ++++ + G I+YC + K V
Sbjct: 220 RLRLHEPQVYLGSFDRPNIRY---TLVEKHKPVSQIIRYLATQKGSCG--IIYCGSRKKV 274
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E +++ L ++A YH M ++ R F RD+I+++VAT+AFGMGI+KP+VR V+
Sbjct: 275 EMVTEKLCNNHIRAAGYHAGMDTEERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRFVV 334
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + + Y ++ + E Q+ L
Sbjct: 335 HFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGPQKQVESHKLN 394
Query: 362 AAQRYCLLTTCRR 374
A + TCRR
Sbjct: 395 AMSAFAEAQTCRR 407
>gi|262392866|ref|YP_003284720.1| ATP-dependent DNA helicase RecQ [Vibrio sp. Ex25]
gi|451976070|ref|ZP_21927241.1| ATP-dependent DNA helicase RecQ [Vibrio alginolyticus E0666]
gi|262336460|gb|ACY50255.1| ATP-dependent DNA helicase RecQ [Vibrio sp. Ex25]
gi|451929977|gb|EMD77700.1| ATP-dependent DNA helicase RecQ [Vibrio alginolyticus E0666]
Length = 611
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 149/373 (39%), Positives = 218/373 (58%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FR Q++VI+ IE +D LV+M TG GKSLCYQ+P LV LV+SPLIS
Sbjct: 20 LEEVFGYQTFRDGQQEVIEAAIEGKDSLVIMPTGGGKSLCYQIPALVRSGITLVISPLIS 79
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV LK G+ AE + S SV + +G +L++++PE+ ++ F +
Sbjct: 80 LMKDQVDQLKANGVAAECVNSTMNREELLSVYNRMHSGQLKLVYVSPER--VLMRDFIER 137
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +L+ VPF+ALTATA + R DI+
Sbjct: 138 LENLPLSMIAVDEAHCISQWGHDFRPEYAALGQLKQHFSHVPFMALTATADDATRRDILE 197
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L+L P V + SFDR N+ Y + V ++++ + G I+YC + K V
Sbjct: 198 RLRLHEPQVYLGSFDRPNIRY---TLVEKHKPVSQIIRYLATQKGSCG--IIYCGSRKKV 252
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E +++ L ++A YH M ++ R F RD+I+++VAT+AFGMGI+KP+VR V+
Sbjct: 253 EMVTEKLCNNHIRAAGYHAGMDTEERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRFVV 312
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + + Y ++ + E Q+ L
Sbjct: 313 HFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGPQKQVESHKLN 372
Query: 362 AAQRYCLLTTCRR 374
A + TCRR
Sbjct: 373 AMSAFAEAQTCRR 385
>gi|291532391|emb|CBL05504.1| ATP-dependent DNA helicase, RecQ-like [Megamonas hypermegale
ART12/1]
Length = 516
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 152/377 (40%), Positives = 227/377 (60%), Gaps = 16/377 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+K++GY FRP QK V++ ++ K D + +M TG+GKS+C+Q+P L+ LV+SPLIS
Sbjct: 10 LQKFYGYEDFRPGQKKVVESLLNKNDTVAIMPTGAGKSICFQIPALLFEGVTLVISPLIS 69
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKAC--IIPISFW 119
LM+DQV SL+Q GI A ++ S+ + + + + G+++++++ PE+ +P SF
Sbjct: 70 LMKDQVDSLRQLGIAAVYINSSVSKAQLYKDLQDISAGFYKIIYIAPERLTSEYLPDSFK 129
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRID 178
+ + + AVDEAHC+S+WGHDFR Y+ + L P + A TATAT +V+ D
Sbjct: 130 N----LNISMVAVDEAHCLSQWGHDFRPSYRNILNFTNSLRIKPIISAFTATATPEVKTD 185
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
IIN L LK P V + FDR NL++ V RG+ ++ + K AG I+Y T
Sbjct: 186 IINLLGLKQPNVFVTGFDRPNLYFSVL---RGEVKDKFVIDYVKKHQDEAG--IIYVGTR 240
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
KDV+ + L+ G+KAG YH M + R + F+ D + VMVAT AFGMGIDKP+VR
Sbjct: 241 KDVDALQVLLEIKGIKAGRYHAGMTDEERNQMQEDFLYDNLSVMVATNAFGMGIDKPNVR 300
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGES-QTENQRTAIM 357
+VIHY PK +E+YYQE+GR GRDG++ C L Y+ + F +S ++E ++
Sbjct: 301 YVIHYNMPKNMEAYYQEAGRAGRDGLSGNCILLYSPQDTQLQKFLISKSTESEIRQQLEY 360
Query: 358 ESLLAAQRYCLLTTCRR 374
+ L + YC C R
Sbjct: 361 KRLQSMVDYCHTPQCLR 377
>gi|161486779|ref|NP_807007.2| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|161501914|ref|NP_457793.2| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|417337681|ref|ZP_12119750.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Alachua str. R6-377]
gi|417471048|ref|ZP_12167106.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. S5-403]
gi|353563828|gb|EHC30067.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Alachua str. R6-377]
gi|353623757|gb|EHC72954.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. S5-403]
Length = 614
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 220/375 (58%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+ +I + RDCLVVM TG GKSLCYQ+P L+ +VVSPLI
Sbjct: 21 VLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLI 80
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q+ V TG +LL++ PE+ ++ +F
Sbjct: 81 SLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQIRLLYIAPER--LMLDNFLD 138
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DII
Sbjct: 139 HLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTTRQDII 198
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 199 RLLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 253
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 254 VEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 313
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I
Sbjct: 314 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPAGQLQDIERHK 372
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 373 LNAMGAFAEAQTCRR 387
>gi|220935100|ref|YP_002513999.1| ATP-dependent DNA helicase RecQ [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219996410|gb|ACL73012.1| ATP-dependent DNA helicase RecQ [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 711
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 154/377 (40%), Positives = 226/377 (59%), Gaps = 15/377 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FRP Q ++++ ++ + LV+M TG GKSLCYQ+P LV T +VVSPLI+
Sbjct: 8 LRDTFGYPDFRPTQGEIVEHLVAGNEALVLMPTGGGKSLCYQIPSLVRSGTGIVVSPLIA 67
Query: 65 LMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV +L+Q G+ A FL S A+T V+ G LL++ PE+ ++
Sbjct: 68 LMQDQVDALRQVGVRAAFLNSSLDARTAREVEQALLAGELDLLYVAPER--LMTERMMDL 125
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L ++ + LFA+DEAHC+S+WGH+FR EY +L L VP VALTATA R +I
Sbjct: 126 LTRSRLALFAIDEAHCVSQWGHNFRPEYLKLSALHERFPEVPRVALTATADAPTRKEIAE 185
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L I+ FDR N+ Y +V + +EL++ I + G I VYC++ K V
Sbjct: 186 RLGLTEARHFISGFDRPNIRY--RVTQKHAGTRNELLRFIKDNHPGEAGI-VYCLSRKKV 242
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
++ ++ L+ G+ A YH + + R++ F+R+E ++VAT+AFGMGIDKP+VR V
Sbjct: 243 DDTAQWLEGKGLTALPYHAGLAQEVRQDHQSRFLREEGVIVVATIAFGMGIDKPNVRFVA 302
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN--FAKGDFYCGESQTENQRT--AIM 357
H PK+LE+YYQE+GR GRDG+ + W+ Y + + E++ ++R A +
Sbjct: 303 HLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVIMLRQMLEASEAEETHKRIERARL 362
Query: 358 ESLLAAQRYCLLTTCRR 374
E++L YC LTTCRR
Sbjct: 363 EAMLG---YCELTTCRR 376
>gi|168238410|ref|ZP_02663468.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|197288782|gb|EDY28157.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
Length = 615
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 220/375 (58%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+ +I + RDCLVVM TG GKSLCYQ+P L+ +VVSPLI
Sbjct: 22 VLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLI 81
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q+ V TG +LL++ PE+ ++ +F
Sbjct: 82 SLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQIRLLYIAPER--LMLDNFLD 139
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DII
Sbjct: 140 HLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTTRQDII 199
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 200 RLLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 254
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 255 VEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 314
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I
Sbjct: 315 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPAGQLQDIERHK 373
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 374 LNAMGAFAEAQTCRR 388
>gi|228475309|ref|ZP_04060033.1| ATP-dependent DNA helicase RecQ [Staphylococcus hominis SK119]
gi|314936980|ref|ZP_07844327.1| ATP-dependent DNA helicase RecQ [Staphylococcus hominis subsp.
hominis C80]
gi|228270685|gb|EEK12099.1| ATP-dependent DNA helicase RecQ [Staphylococcus hominis SK119]
gi|313655599|gb|EFS19344.1| ATP-dependent DNA helicase RecQ [Staphylococcus hominis subsp.
hominis C80]
Length = 592
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 157/378 (41%), Positives = 226/378 (59%), Gaps = 14/378 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M +TL YFGY FRP QK++I +I+ + L V+ TG GKS+CYQ+P L+ G T +V+S
Sbjct: 1 MEATLSHYFGYDTFRPGQKEIISKILNHHNVLGVLPTGGGKSICYQVPGLMLGGTTIVIS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV LK GI A +L S+ + S ++ K T Q L++ PE+ +
Sbjct: 61 PLISLMKDQVDQLKAMGIEAAYLNSSLNKKQQSEIENKLITEGIQFLYVAPER---FESN 117
Query: 118 FWSKLL-KAGVCLFAVDEAHCISEWGHDFRLEYKQ-LDKLRTFLLGVPFVALTATATEKV 175
++ KLL + + L A DEAHCIS+WGHDFR Y+ ++K+ T VALTATAT +V
Sbjct: 118 YFLKLLSQIDINLIAFDEAHCISKWGHDFRPSYQSVINKVFTLPQDFTIVALTATATAEV 177
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYC 235
+ DI+ L ++ S R+NL + V + Q FV E + K AG I+YC
Sbjct: 178 QQDIMEKLNIRKEDEIKTSTKRRNLIFKVNPTYQRQKFVIEYAK-AHKDQAG----IIYC 232
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
T K VEE+ ++L+ + + + YH + +K REEA F+ D I+V++AT AFGMGIDK
Sbjct: 233 STRKQVEELQESLESINIASVIYHAGLTNKEREEAQNDFVYDRIKVVIATNAFGMGIDKS 292
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ-RT 354
+VR+VIHY P LESYYQE+GR GRDG+ S C L ++ + +++ SQ ++ +
Sbjct: 293 NVRYVIHYNMPGDLESYYQEAGRAGRDGLKSECILLFSERDKGLHEYFITVSQADDDYKD 352
Query: 355 AIMESLLAAQRYCLLTTC 372
+ E L +Y C
Sbjct: 353 KMGEKLTKMIQYTKTKKC 370
>gi|62182427|ref|YP_218844.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|168263151|ref|ZP_02685124.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168822671|ref|ZP_02834671.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194446579|ref|YP_002043188.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|213427355|ref|ZP_03360105.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213649567|ref|ZP_03379620.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|224585773|ref|YP_002639572.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|289828697|ref|ZP_06546492.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|375003823|ref|ZP_09728161.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|375116774|ref|ZP_09761944.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
gi|378961517|ref|YP_005219003.1| ATP-dependent DNA helicase recQ [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
gi|409247635|ref|YP_006888331.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|416529343|ref|ZP_11744310.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|416540118|ref|ZP_11750292.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|416548851|ref|ZP_11755065.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|418762505|ref|ZP_13318633.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|418764312|ref|ZP_13320412.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|418773202|ref|ZP_13329193.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|418777929|ref|ZP_13333850.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|418779076|ref|ZP_13334982.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|418785638|ref|ZP_13341468.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|418791453|ref|ZP_13347215.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|418791792|ref|ZP_13347544.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|418797728|ref|ZP_13353411.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|418801455|ref|ZP_13357089.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|418807130|ref|ZP_13362696.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|418811291|ref|ZP_13366825.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|418826243|ref|ZP_13381486.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22462]
gi|418829058|ref|ZP_13384050.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|418836055|ref|ZP_13390945.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|418842971|ref|ZP_13397777.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|418847517|ref|ZP_13402271.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|418851574|ref|ZP_13406284.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|418855043|ref|ZP_13409705.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|418859144|ref|ZP_13413751.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|418862341|ref|ZP_13416883.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|418865911|ref|ZP_13420377.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
gi|419788039|ref|ZP_14313738.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|419792725|ref|ZP_14318356.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|62130060|gb|AAX67763.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|194405242|gb|ACF65464.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|205340978|gb|EDZ27742.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205348083|gb|EDZ34714.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|224470301|gb|ACN48131.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|320088369|emb|CBY98129.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|322716920|gb|EFZ08491.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
gi|353074144|gb|EHB39906.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|363552625|gb|EHL36909.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|363559478|gb|EHL43644.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|363570670|gb|EHL54599.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|374355389|gb|AEZ47150.1| ATP-dependent DNA helicase recQ [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
gi|392618248|gb|EIX00655.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|392618380|gb|EIX00781.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|392730245|gb|EIZ87491.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|392736295|gb|EIZ93459.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|392742663|gb|EIZ99749.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|392743428|gb|EJA00500.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|392751538|gb|EJA08487.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|392753920|gb|EJA10840.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|392755163|gb|EJA12077.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|392768343|gb|EJA25099.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|392769553|gb|EJA26284.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|392779635|gb|EJA36299.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|392780048|gb|EJA36707.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|392780419|gb|EJA37072.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|392802536|gb|EJA58748.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|392805635|gb|EJA61758.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|392806235|gb|EJA62346.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|392807530|gb|EJA63600.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|392808110|gb|EJA64163.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22462]
gi|392817089|gb|EJA73006.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|392822614|gb|EJA78420.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|392830940|gb|EJA86582.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|392836344|gb|EJA91928.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|392840884|gb|EJA96417.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
Length = 615
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 220/375 (58%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+ +I + RDCLVVM TG GKSLCYQ+P L+ +VVSPLI
Sbjct: 22 VLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLI 81
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q+ V TG +LL++ PE+ ++ +F
Sbjct: 82 SLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQIRLLYIAPER--LMLDNFLD 139
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DII
Sbjct: 140 HLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTTRQDII 199
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 200 RLLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 254
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 255 VEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 314
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I
Sbjct: 315 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPAGQLQDIERHK 373
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 374 LNAMGAFAEAQTCRR 388
>gi|213162090|ref|ZP_03347800.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
Length = 431
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 155/374 (41%), Positives = 220/374 (58%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+ +I + RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 23 LQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLIS 82
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S Q+ V TG +LL++ PE+ ++ +F
Sbjct: 83 LMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQIRLLYIAPER--LMLDNFLDH 140
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DII
Sbjct: 141 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTTRQDIIR 200
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 201 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 255
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 256 EDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 315
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I L
Sbjct: 316 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPAGQLQDIERHKL 374
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 375 NAMGAFAEAQTCRR 388
>gi|254429530|ref|ZP_05043237.1| ATP-dependent DNA helicase RecQ [Alcanivorax sp. DG881]
gi|196195699|gb|EDX90658.1| ATP-dependent DNA helicase RecQ [Alcanivorax sp. DG881]
Length = 713
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 159/382 (41%), Positives = 222/382 (58%), Gaps = 22/382 (5%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
S L+ FGY FR Q+ +I +I+ D LV+M TG GKSLCYQ+P LV T +V+SPL
Sbjct: 7 SVLEHVFGYHQFRGEQQTIIDTLIQGDDALVLMPTGGGKSLCYQIPALVRAGTGVVISPL 66
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIPISFW 119
I+LMQDQV +LK G+ A FL S + V+ G +L++ PE+ +I
Sbjct: 67 IALMQDQVDALKALGVKAGFLNSTLSLEQVRELENALLQGQLDMLYIAPER--LIQPRTL 124
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+ L +A + LFA+DEAHC+S+WGHDFR +Y QL L VP +ALTATA ++ R +I
Sbjct: 125 ALLKQAEIALFAIDEAHCVSQWGHDFRNDYLQLSLLHREFPQVPRIALTATADQRTRTEI 184
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
L L ++SFDR N+ Y I R ++L++ + AG I VYC++
Sbjct: 185 AERLDLTQARHFVSSFDRPNIQY---RIERKDGARNQLLRLLRAEHAGEAGI-VYCLSRN 240
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+ +++ L Q G+ A YH + RE+ + F+R++ VMVAT+AFGMGIDKPDVR
Sbjct: 241 KVDRVAEWLCQQGINALPYHAGLSGPVREKHQQRFLREDGIVMVATIAFGMGIDKPDVRF 300
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGES-------QTENQ 352
V H PK++ESYYQE+GR GRDG + W+ Y + K +S + ENQ
Sbjct: 301 VAHLDLPKSIESYYQETGRAGRDGNPATAWMAYGLEDAIKLKQMLAQSSGNEQHKRNENQ 360
Query: 353 RTAIMESLLAAQRYCLLTTCRR 374
R +ES+L C +T CRR
Sbjct: 361 R---LESMLG---LCEITHCRR 376
>gi|204930202|ref|ZP_03221179.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|204320606|gb|EDZ05808.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
Length = 615
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 220/375 (58%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+ +I + RDCLVVM TG GKSLCYQ+P L+ +VVSPLI
Sbjct: 22 VLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLI 81
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q+ V TG +LL++ PE+ ++ +F
Sbjct: 82 SLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQIRLLYIAPER--LMLDNFLD 139
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DII
Sbjct: 140 HLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTTRQDII 199
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 200 RLLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 254
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 255 VEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 314
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I
Sbjct: 315 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPAGQLQDIERHK 373
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 374 LNAMGAFAEAQTCRR 388
>gi|32474001|ref|NP_866995.1| ATP-dependent DNA helicase RecQ [Rhodopirellula baltica SH 1]
gi|32444538|emb|CAD74537.1| ATP-dependent DNA helicase RecQ [Rhodopirellula baltica SH 1]
Length = 749
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 153/367 (41%), Positives = 220/367 (59%), Gaps = 21/367 (5%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
S L+ +GY FRP Q D +Q +I+ RD LVV+ TG GKSLCYQ+P LV ++VVSPL
Sbjct: 30 SVLRSVWGYDSFRPLQADAVQDVIQGRDSLVVLPTGGGKSLCYQVPALVRDGMSVVVSPL 89
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET------GYFQLLFMTPEKACIIPI 116
ISLM+DQV +L G++A + S Q SV+ K ET G ++L++ PE+ + P
Sbjct: 90 ISLMKDQVDALTSNGVSAALVNSTQ---SVEQKRETAERLRRGEIKILYLAPER-LLTPK 145
Query: 117 SFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
+ L + FA+DEAHC+S WGHDFR EY+ L L+ A TATA+E+VR
Sbjct: 146 TL-DFLRSLPISFFAIDEAHCVSNWGHDFRPEYRGLRILKEQFPSASVHAFTATASEQVR 204
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DI L+L P + + FDR NL Y + R ++++ Q I + +G +VYC+
Sbjct: 205 DDIAEQLQLNQPNILVGDFDRPNLTYRML---RADGKLNQIQQCIAQHPGESG--VVYCI 259
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
T K+VE+ + AL+ +GV+ YH + R+ FI++++ V+VAT+AFGMGIDK +
Sbjct: 260 TRKEVEQTAAALESMGVRTLPYHAGLPDDVRQANQEAFIQEKVDVIVATVAFGMGIDKSN 319
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIH G PK++E Y QESGR GRDG+A+ C L + + GD + EN +
Sbjct: 320 VRFVIHAGMPKSIEHYQQESGRAGRDGLAAECILLH-----SGGDLMSWKRILENGDRSN 374
Query: 357 MESLLAA 363
+S +A+
Sbjct: 375 FQSAMAS 381
>gi|410086312|ref|ZP_11283024.1| ATP-dependent DNA helicase RecQ [Morganella morganii SC01]
gi|409767157|gb|EKN51237.1| ATP-dependent DNA helicase RecQ [Morganella morganii SC01]
Length = 608
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 221/375 (58%), Gaps = 10/375 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ L + FGY FR Q D+I + RDCLVVM TG GKSLCYQ+P L+ +VVSPL
Sbjct: 15 AILHQIFGYQQFRAGQSDIIDTVTGGRDCLVVMPTGGGKSLCYQIPALMLPGLTVVVSPL 74
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFW 119
ISLM+DQV L+ G+ A +L SAQT Q E +LL++ PE+ ++ SF
Sbjct: 75 ISLMKDQVDQLRLLGVEAGYLNSAQTAQEQQKVLEGCHNNRIKLLYVAPER--LLMSSFI 132
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L + L AVDEAHCIS+WGHDFR EY + +LR L GVP +ALTATA R DI
Sbjct: 133 RQLQQWQPSLLAVDEAHCISQWGHDFRPEYCAIGELRQHLPGVPVIALTATADNTTRSDI 192
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+ L+L +P + I+SFDR N+ Y ++ + ++F D+L + G I+YC +
Sbjct: 193 CSRLRLSDPLIHISSFDRPNIRY--TLVEKYKAF-DQLWMFVRGQKGQCG--IIYCNSRN 247
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
VE+++ L++ G+ YH + + RE F++D ++V+VAT+AFGMGI+K +VR
Sbjct: 248 KVEDVAARLQKRGLSVAAYHAGLDNSQREWVQDAFLKDNLQVVVATVAFGMGINKSNVRF 307
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V H+ P+ +ESYYQE+GR GRDG+++ L+Y ++ A E Q+
Sbjct: 308 VAHFDIPRNIESYYQETGRAGRDGVSAEAVLFYDPADMAWLRRCLDEKPAGPQKDIEQHK 367
Query: 360 LLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 368 LNAMGAFAQAQTCRR 382
>gi|325110491|ref|YP_004271559.1| ATP-dependent DNA helicase RecQ [Planctomyces brasiliensis DSM
5305]
gi|324970759|gb|ADY61537.1| ATP-dependent DNA helicase RecQ [Planctomyces brasiliensis DSM
5305]
Length = 741
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 152/375 (40%), Positives = 220/375 (58%), Gaps = 11/375 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ LK+Y+GY FRP Q++ I+ ++++RD +VV+ TG GKSLCYQ+P + A+VVSP
Sbjct: 24 AAVLKRYWGYDSFRPLQEEAIRAVLQRRDSVVVLPTGGGKSLCYQVPAALRDGLAVVVSP 83
Query: 62 LISLMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LI+LM+DQV +L GI+A + S A+ + + E G +L++ PE+ C
Sbjct: 84 LIALMKDQVDALTDLGISAAAVNSSLPAEERRQIARRVEAGEISMLYVAPERLC--NERM 141
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
L + V AVDEAHCIS WGH FR EY+ L LR V A TATAT +VR D
Sbjct: 142 LDFLSRQQVSFIAVDEAHCISSWGHQFRPEYRLLGSLRDRFPNVDIHAYTATATAQVRDD 201
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I L L+ P + + +FDR NL Y +V+ R S + ++E+L G II YC++
Sbjct: 202 IAAQLDLREPELHVGNFDRPNLTY--RVVPRQDS--KKQIREVLDRFKGQSGII-YCISR 256
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K V+E+++ L Q G ++ YH + R+ A F+ +++ ++VAT+AFGMGIDKP+VR
Sbjct: 257 KQVDELNEYLNQSGFRSAAYHAGLEHDQRQAAQDAFLSEQVDIVVATVAFGMGIDKPNVR 316
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
VIH K+LE+Y QE+GR GRDG+ + C L+Y +FA + + E A E
Sbjct: 317 FVIHASSTKSLENYQQEAGRAGRDGLPAECHLFYGARDFALWKKMLSDLEGEAGDVA-RE 375
Query: 359 SLLAAQRYCLLTTCR 373
L R+C CR
Sbjct: 376 QLQKMSRFCHTAICR 390
>gi|291615730|ref|YP_003518472.1| RecQ [Pantoea ananatis LMG 20103]
gi|378769205|ref|YP_005197680.1| ATP-dependent DNA helicase RecQ [Pantoea ananatis LMG 5342]
gi|386081281|ref|YP_005994806.1| ATP-dependent DNA helicase RecQ [Pantoea ananatis PA13]
gi|291150760|gb|ADD75344.1| RecQ [Pantoea ananatis LMG 20103]
gi|354990462|gb|AER34586.1| ATP-dependent DNA helicase RecQ [Pantoea ananatis PA13]
gi|365188693|emb|CCF11643.1| ATP-dependent DNA helicase RecQ [Pantoea ananatis LMG 5342]
Length = 608
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 152/373 (40%), Positives = 215/373 (57%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FRP Q+ +I + RDCLVVM TG GKSLCYQ+P LV LVVSPLIS
Sbjct: 17 LQDTFGYQQFRPGQQTIINEALSGRDCLVVMPTGGGKSLCYQIPALVREGLTLVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A L S T V G +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLLANGVAAACLNSTMTREQQQVVMADCRNGRVKLLYIAPER--LMMDNFLDS 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L C+ AVDEAHCIS+WGHDFR EY L ++R +P +ALTATA E R+DIIN
Sbjct: 135 LAHWQPCMLAVDEAHCISQWGHDFRPEYGALGQMRQRFPDLPVMALTATADETTRLDIIN 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L +++P + I+SFDR N+ Y ++ + + ++L++ + G I+YC + V
Sbjct: 195 LLHMQDPLIQISSFDRPNIRY--TLVEKFKP-TEQLLRYVQDQRGKCG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ G YH + S R F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSRGLSVGAYHAGIDSAQRARVQEAFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + + Y ++ A E Q + L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMAWLRKCLEEKQPGPLQDIERHKLN 369
Query: 362 AAQRYCLLTTCRR 374
A + TCRR
Sbjct: 370 AMNAFAEAQTCRR 382
>gi|409202724|ref|ZP_11230927.1| ATP-dependent DNA helicase [Pseudoalteromonas flavipulchra JG1]
Length = 607
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 146/375 (38%), Positives = 222/375 (59%), Gaps = 10/375 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
S LK FGYS FR Q D+IQ + +D LV++ TG GKSLCYQ+P ++ +V+SPL
Sbjct: 17 SVLKDVFGYSTFRDGQLDIIQSSLAGQDTLVLLPTGGGKSLCYQVPAVLFAGVTIVISPL 76
Query: 63 ISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLMQDQV LK +GI AE++ ++ + G +LL++ PEKA + F
Sbjct: 77 ISLMQDQVAQLKAQGIAAEYINNSVAWEQQRDTYDALFQGRLKLLYVAPEKA--LQRDFI 134
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
++ + LFA+DEAHC+S WGHDFR Y +L +LR VP +ALTATA R DI
Sbjct: 135 ERISNCNISLFAIDEAHCVSHWGHDFRPHYFRLKELRQHFPSVPMMALTATADLATRKDI 194
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+ L ++ P++ SFDR N+ Y ++ + S +L++ + + +G I+YC + K
Sbjct: 195 VQQLGMQAPFIYTGSFDRPNIRYTIEEKFKPLS---QLIRYLKEQKGQSG--IIYCGSRK 249
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V++I++ L G A YH + + R+ F RD+I+++VAT+AFGMGI+KP+VR
Sbjct: 250 RVDDIAEKLIDAGFNAAGYHAGLDNDQRQFVQNRFARDDIQIVVATVAFGMGINKPNVRF 309
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V+HY PK++E+YYQE+GR GRD +A+ +Y+ ++ + + + E +R +
Sbjct: 310 VVHYDIPKSVEAYYQETGRAGRDSLAAEAVMYFDPADIPRVRRFFEDIPDEQRRKVEEQR 369
Query: 360 LLAAQRYCLLTTCRR 374
A + TCRR
Sbjct: 370 FQAMSSFAEAQTCRR 384
>gi|433659081|ref|YP_007276460.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus BB22OP]
gi|432509769|gb|AGB11286.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus BB22OP]
Length = 611
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 147/373 (39%), Positives = 220/373 (58%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FR Q++VI +E +D LV+M TG GKSLCYQ+P LV LV+SPLIS
Sbjct: 20 LEEVFGYQTFRDGQQEVIASAVEGKDSLVIMPTGGGKSLCYQIPALVRSGITLVISPLIS 79
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV LK G+ AE + S + SV + +G +L++++PE+ ++ F +
Sbjct: 80 LMKDQVDQLKANGVAAECVNSTMSREELLSVYNRMHSGQLKLVYVSPER--VLMRDFIER 137
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +L+ VPF+ALTATA + R DI+
Sbjct: 138 LENLPLAMIAVDEAHCISQWGHDFRPEYAALGQLKQHFSHVPFMALTATADDATRRDILE 197
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L+L P+V + SFDR N+ Y + ++ + ++++ + G I+YC + K V
Sbjct: 198 RLRLHEPHVHLGSFDRPNIRYNLVEKHKP---ISQIIRYLDTQKGNCG--IIYCGSRKKV 252
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E +++ L ++A YH M + R F RD+I+++VAT+AFGMGI+KP+VR V+
Sbjct: 253 EMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRFVV 312
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + + Y ++ + E Q+ L
Sbjct: 313 HFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGPQKQVESHKLN 372
Query: 362 AAQRYCLLTTCRR 374
A + TCRR
Sbjct: 373 AMSAFAEAQTCRR 385
>gi|269137489|ref|YP_003294189.1| ATP-dependent DNA helicase RecQ [Edwardsiella tarda EIB202]
gi|387866249|ref|YP_005697718.1| ATP-dependent DNA helicase RecQ [Edwardsiella tarda FL6-60]
gi|267983149|gb|ACY82978.1| ATP-dependent DNA helicase RecQ [Edwardsiella tarda EIB202]
gi|304557562|gb|ADM40226.1| ATP-dependent DNA helicase RecQ [Edwardsiella tarda FL6-60]
Length = 609
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 153/374 (40%), Positives = 222/374 (59%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK FGY FRP Q+ +++ I RDCLVVM TG GKSLCYQ+P LV +VVSPLIS
Sbjct: 17 LKDTFGYQQFRPGQQAIVEAAIAGRDCLVVMPTGGGKSLCYQIPALVRDGLTIVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+NA L S + +V +G +LL++ PE+ ++ +
Sbjct: 77 LMKDQVDQLQANGVNAACLNSTLNREQQQAVYAGCRSGEIRLLYIAPER--LMMDNLLDT 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + L AVDEAHCIS+WGHDFR EY L +++ +P +ALTATA + R DI+
Sbjct: 135 LPQWNPTLLAVDEAHCISQWGHDFRPEYSALGQIKRRFPQMPVIALTATADDATRQDILG 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L++P V ++SFDR N+ Y +I + + +D+L + +G I+YC + V
Sbjct: 195 LLDLRDPLVQVSSFDRPNIRY--TLIEKFKP-LDQLWHFVQSQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ G YH + + R E F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSRGLSVGAYHAGLDNGRRAEVQEAFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI-MESL 360
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + E + I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEALLFYDPADMAWLR-RCLEEKPEGAQKEIERHKL 368
Query: 361 LAAQRYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMNAFAEAQTCRR 382
>gi|417392279|ref|ZP_12155173.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Minnesota str. A4-603]
gi|353612508|gb|EHC64868.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Minnesota str. A4-603]
Length = 603
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 220/375 (58%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+ +I + RDCLVVM TG GKSLCYQ+P L+ +VVSPLI
Sbjct: 10 VLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLI 69
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q+ V TG +LL++ PE+ ++ +F
Sbjct: 70 SLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQVRLLYIAPER--LMLDNFLD 127
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DII
Sbjct: 128 HLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTTRQDII 187
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 188 RLLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 242
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 243 VEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 302
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I
Sbjct: 303 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPAGQLQDIERHK 361
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 362 LNAMGAFAEAQTCRR 376
>gi|358051581|ref|ZP_09145765.1| ATP-dependent DNA helicase RecQ [Staphylococcus simiae CCM 7213]
gi|357258915|gb|EHJ08788.1| ATP-dependent DNA helicase RecQ [Staphylococcus simiae CCM 7213]
Length = 592
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 153/356 (42%), Positives = 214/356 (60%), Gaps = 13/356 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M TL YFGY FRP Q+++I R+I ++ L V+ TG GKS+CYQ+P L+ G T +V+S
Sbjct: 1 MQQTLSHYFGYDQFRPGQEEIITRVINHQNVLGVLPTGGGKSICYQVPGLMLGGTTIVIS 60
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPIS 117
PLISLM+DQV LK GINA +L S+ T ++ + + G Q L++ PE+
Sbjct: 61 PLISLMKDQVDQLKAMGINAAYLNSSLTQKEQQRIENELQQGTIQFLYVAPER---FENR 117
Query: 118 FWSKLLKA-GVCLFAVDEAHCISEWGHDFRLEYKQ-LDKLRTFLLGVPFVALTATATEKV 175
F+ LL + L A DEAHCIS+WGHDFR Y+ + K+ T VALTATAT +V
Sbjct: 118 FFVNLLSHINIHLIAFDEAHCISKWGHDFRPSYQNVITKVFTLPQDFTIVALTATATTEV 177
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYC 235
+ DI L + S R NL + V + Q FV + VQ+ + AG IVYC
Sbjct: 178 QQDIRQKLNISLDNEIKTSTKRHNLIFKVNPTYQRQKFVLDYVQQ-HRDEAG----IVYC 232
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
T K VEE+ +AL+ +K+ YH + +K RE+A F+ D ++V++AT AFGMGIDK
Sbjct: 233 STRKQVEELQEALQNQNIKSSIYHAGLSNKEREQAQNDFVYDRVKVVIATNAFGMGIDKS 292
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTEN 351
+VR VIHY P +ESYYQE+GR GRDG+ S C L ++ + +++ SQ ++
Sbjct: 293 NVRFVIHYNMPGDIESYYQEAGRAGRDGLKSECILLFSERDIQLHEYFITISQADD 348
>gi|224025973|ref|ZP_03644339.1| hypothetical protein BACCOPRO_02724 [Bacteroides coprophilus DSM
18228]
gi|224019209|gb|EEF77207.1| hypothetical protein BACCOPRO_02724 [Bacteroides coprophilus DSM
18228]
Length = 727
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 155/382 (40%), Positives = 239/382 (62%), Gaps = 17/382 (4%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ LKKYFG+ F+ Q+ +I+ ++E +D V+M TG GKSLCYQLP L+ TA+V+S
Sbjct: 7 LTEQLKKYFGFDTFKGNQEAIIRNLLEGKDTFVLMPTGGGKSLCYQLPSLLMEGTAIVIS 66
Query: 61 PLISLMQDQVMSLK----QRGINAEFLGSAQTDSSV-QTKAE--TGYFQLLFMTPEKACI 113
PLI+LM++QV +++ + G+ A F+ S+ T S++ Q K++ +G +LL++ PE
Sbjct: 67 PLIALMKNQVDAMRNFSEEDGV-AHFINSSLTKSAIDQVKSDILSGKTKLLYVAPESLTK 125
Query: 114 IPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATE 173
+ K +K + +AVDEAHCISEWGHDFR EY+++ + + P +ALTATAT
Sbjct: 126 EENVGFLKHVK--ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPVIALTATATP 183
Query: 174 KVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIV 233
KV++DI +L + + +SF+R NL+Y V+ + + ++++ I ++ +G I+
Sbjct: 184 KVKMDIQKNLGMTDAVEFKSSFNRPNLYYEVRA--KTANVDRDIIKFIRQNEEKSG--II 239
Query: 234 YCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGID 293
YC++ K VEE+++ L+ G+KA YH M S R F++++I V+VAT+AFGMGID
Sbjct: 240 YCLSRKKVEELAEVLQANGIKARPYHAGMDSATRSANQDAFLKEDIDVIVATIAFGMGID 299
Query: 294 KPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD-FYCGESQTENQ 352
KPDVR VIHY PK+LE YYQE+GR GRDG C +Y+ + K + F G+ +E +
Sbjct: 300 KPDVRFVIHYDVPKSLEGYYQETGRAGRDGGEGQCITFYSNKDLQKLEKFMQGKPVSEQE 359
Query: 353 RTAIMESLLAAQRYCLLTTCRR 374
+ LL Y + CRR
Sbjct: 360 IGKQL--LLETAAYAESSVCRR 379
>gi|83749347|ref|ZP_00946343.1| ATP-dependent DNA helicase recQ [Ralstonia solanacearum UW551]
gi|421895909|ref|ZP_16326308.1| atp-dependent dna helicase protein [Ralstonia solanacearum MolK2]
gi|83723972|gb|EAP71154.1| ATP-dependent DNA helicase recQ [Ralstonia solanacearum UW551]
gi|206587074|emb|CAQ17658.1| atp-dependent dna helicase protein [Ralstonia solanacearum MolK2]
Length = 637
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 154/383 (40%), Positives = 221/383 (57%), Gaps = 16/383 (4%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGK----TALV 58
+ L FGYS FR Q D++ + + DCLV+M TG GKSLCYQ+P LV + +V
Sbjct: 24 AVLHDVFGYSAFRGPQADIVTHVADGGDCLVLMPTGGGKSLCYQIPALVRHRRGQGAGIV 83
Query: 59 VSPLISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIP 115
VSPLI+LMQDQV +L++ G+ A +L SA T + V+ G L+++ PE+ ++
Sbjct: 84 VSPLIALMQDQVAALEEAGVRAAYLNSALTGTEAAQVERDLAAGRLDLVYVAPER--LMT 141
Query: 116 ISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
F L ++ + LFA+DEAHC+S+WGHDFR EY QL L VP +ALTATA
Sbjct: 142 PRFLELLERSRIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPHVPRIALTATADAVT 201
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYC 235
R +I+ L L V ++SFDR N+ Y + + + + ++ G + IVYC
Sbjct: 202 RDEIVERLALGGERVFLSSFDRPNIRYTIVEKDSARQQLLRFIRAEHLGEDGCDAGIVYC 261
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
++ K VEE ++ L + G++A YH M + R +F ++E VMVAT+AFGMGIDKP
Sbjct: 262 LSRKKVEETAQWLAEQGIRALPYHAGMDVETRARHQAIFRKEEGVVMVATIAFGMGIDKP 321
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQR-- 353
DVR V H PK+LE YYQE+GR GRDG+ + W+ Y ++ + ES ++
Sbjct: 322 DVRFVAHLDLPKSLEGYYQETGRAGRDGLPANAWMAYGLADVVQQRRMIDESDADDVHKR 381
Query: 354 --TAIMESLLAAQRYCLLTTCRR 374
TA +++LL C CRR
Sbjct: 382 VSTAKLDALLG---LCESAGCRR 401
>gi|392544476|ref|ZP_10291613.1| ATP-dependent DNA helicase [Pseudoalteromonas piscicida JCM 20779]
Length = 607
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 146/375 (38%), Positives = 222/375 (59%), Gaps = 10/375 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
S LK FGYS FR Q D+IQ + +D LV++ TG GKSLCYQ+P ++ +V+SPL
Sbjct: 17 SVLKDVFGYSTFRDGQLDIIQSSLAGQDTLVLLPTGGGKSLCYQVPAVLFAGVTIVISPL 76
Query: 63 ISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLMQDQV LK +GI AE++ ++ + G +LL++ PEKA + F
Sbjct: 77 ISLMQDQVAQLKAQGIAAEYINNSVAWEQQKDTYDALFQGRLKLLYVAPEKA--LQRDFI 134
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
++ + LFA+DEAHC+S WGHDFR Y +L +LR VP +ALTATA R DI
Sbjct: 135 DRISNCNISLFAIDEAHCVSHWGHDFRPHYFRLKELRQHFPSVPMMALTATADLATRKDI 194
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+ L ++ P++ SFDR N+ Y ++ + S +L++ + + +G I+YC + K
Sbjct: 195 VQQLGMQAPFIYTGSFDRPNIRYTIEEKFKPLS---QLIRYLKEQKGQSG--IIYCGSRK 249
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V++I++ L G A YH + + R+ F RD+I+++VAT+AFGMGI+KP+VR
Sbjct: 250 RVDDIAEKLIDAGFNAAGYHAGLDNDQRQFVQNRFARDDIQIVVATVAFGMGINKPNVRF 309
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V+HY PK++E+YYQE+GR GRD +A+ +Y+ ++ + + + E +R +
Sbjct: 310 VVHYDIPKSVEAYYQETGRAGRDSLAAEAVMYFDPADIPRVRRFFEDIPDEQRRKVEEQR 369
Query: 360 LLAAQRYCLLTTCRR 374
A + TCRR
Sbjct: 370 FQAMSSFAEAQTCRR 384
>gi|300690154|ref|YP_003751149.1| ATP-dependent DNA helicase [Ralstonia solanacearum PSI07]
gi|299077214|emb|CBJ49840.2| ATP-dependent DNA helicase [Ralstonia solanacearum PSI07]
gi|344168960|emb|CCA81281.1| ATP-dependent DNA helicase [blood disease bacterium R229]
Length = 637
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 153/383 (39%), Positives = 223/383 (58%), Gaps = 16/383 (4%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGK----TALV 58
+ L FGYS FR Q D++ + + DCLV+M TG GKSLCYQ+P LV + +V
Sbjct: 24 AVLHDVFGYSAFRGPQADIVAHVADGGDCLVLMPTGGGKSLCYQIPALVRHRRGQGAGIV 83
Query: 59 VSPLISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIP 115
VSPLI+LMQDQV +L++ G+ A +L SA + + V+ G L+++ PE+ ++
Sbjct: 84 VSPLIALMQDQVAALEEAGVRAAYLNSALSGAEAAQVERDLAAGRLDLVYVAPER--LMT 141
Query: 116 ISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
F L ++ + LFA+DEAHC+S+WGHDFR EY QL L VP +ALTATA
Sbjct: 142 PRFLELLERSRIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPHVPRIALTATADAVT 201
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYC 235
R +I+ L L V ++SFDR N+ Y + + + + ++ G + IVYC
Sbjct: 202 RDEIVERLALGGARVFLSSFDRPNIRYTIVEKDSARQQLLRFIRAEHIGEDGCDAGIVYC 261
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
++ K VEE ++ L + G++A YH M ++ R +F ++E VMVAT+AFGMGIDKP
Sbjct: 262 LSRKKVEETAQWLAEQGIRALPYHAGMDAEIRTRHQAIFRKEEGVVMVATIAFGMGIDKP 321
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQR-- 353
DVR V H PK+LE YYQE+GR GRDG+ + W+ Y ++ + ES+ ++
Sbjct: 322 DVRFVAHLDLPKSLEGYYQETGRAGRDGLPANAWMAYGLADVVQQRRMIDESEADDVHKR 381
Query: 354 --TAIMESLLAAQRYCLLTTCRR 374
TA +++LL C CRR
Sbjct: 382 VSTAKLDALLG---LCESAGCRR 401
>gi|91228026|ref|ZP_01262111.1| ATP-dependent DNA helicase RecQ [Vibrio alginolyticus 12G01]
gi|91188255|gb|EAS74554.1| ATP-dependent DNA helicase RecQ [Vibrio alginolyticus 12G01]
Length = 611
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 152/373 (40%), Positives = 218/373 (58%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FR Q+ VI IE RD LV++ TG GKSLCYQ+P LV LV+SPLIS
Sbjct: 20 LEGVFGYQEFRDGQQLVIDAAIEGRDSLVILPTGGGKSLCYQIPALVRSGITLVISPLIS 79
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV LK G+ AE + S SV + TG+ +L++++PE+ ++ F +
Sbjct: 80 LMKDQVDQLKANGVAAECINSTMPREELLSVYNRMHTGHLKLVYVSPER--VLMRDFIER 137
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +L+ VPF+ALTATA + R DI+
Sbjct: 138 LENLPLSMIAVDEAHCISQWGHDFRPEYAALGQLKQQFSHVPFMALTATADDATRRDILE 197
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L+L NP V + SFDR N+ Y + ++ V ++V+ + G I+YC + K V
Sbjct: 198 RLQLNNPEVYLGSFDRPNIRYNLVEKHKP---VSQIVRYLETQKGNCG--IIYCCSRKKV 252
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E +++ L ++A YH M + R F RD+I+++VAT+AFGMGI+KP+VR V+
Sbjct: 253 EMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRFVV 312
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + + Y ++ + E Q+ L
Sbjct: 313 HFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGPQKQVETHKLN 372
Query: 362 AAQRYCLLTTCRR 374
A + TCRR
Sbjct: 373 AMSAFAEAQTCRR 385
>gi|319954189|ref|YP_004165456.1| ATP-dependent DNA helicase recq [Cellulophaga algicola DSM 14237]
gi|319422849|gb|ADV49958.1| ATP-dependent DNA helicase RecQ [Cellulophaga algicola DSM 14237]
Length = 733
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 161/384 (41%), Positives = 239/384 (62%), Gaps = 24/384 (6%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
S+LKKYFG+S F+ Q+ VI I+E ++C VVM TG GKSLCYQLP L+ TA++VSPL
Sbjct: 10 SSLKKYFGFSEFKGLQESVITSILEGKNCFVVMPTGGGKSLCYQLPALMQEGTAIIVSPL 69
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---------TGYFQLLFMTPEKACI 113
I+LM++QV ++ RGI++E G A +S TK E +G +LL++ PE +
Sbjct: 70 IALMKNQVDAI--RGISSEH-GIAHVLNSSLTKTEIKQVKSDITSGITKLLYVAPE--SL 124
Query: 114 IPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLG-VPFVALTATAT 172
+ L + AVDEAHCISEWGHDFR EY+ L + + L +P + LTATAT
Sbjct: 125 TKDEYVEFLQSVKLSFVAVDEAHCISEWGHDFRPEYRNLRSIISRLDDTIPIIGLTATAT 184
Query: 173 EKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSII 232
KV+ DII +L + + + ASF+R NLFY V+ + Q+ ++++ + ++ +G I
Sbjct: 185 PKVQEDIIKNLGITDADLFKASFNRPNLFYEVR--PKTQNIEADIIRFVKQNTGKSG--I 240
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
+YC++ K VEE+++ L+ GV A YH +K R + +F+ + + V+VAT+AFGMGI
Sbjct: 241 IYCLSRKKVEELAQILQVNGVSAVPYHAGFDTKTRSKYQDMFLMEGVDVVVATIAFGMGI 300
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD-FYCGESQTEN 351
DKPDVR VIH+ PK++ESYYQE+GR GRDG C +Y+ + K + F G+ E
Sbjct: 301 DKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDIEKLEKFMSGKPVAEQ 360
Query: 352 Q-RTAIMESLLAAQRYCLLTTCRR 374
+ A+++ ++A Y + RR
Sbjct: 361 EIGNALLQEMVA---YAETSMSRR 381
>gi|363580415|ref|ZP_09313225.1| ATP-dependent DNA helicase RecQ [Flavobacteriaceae bacterium HQM9]
Length = 728
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 155/368 (42%), Positives = 236/368 (64%), Gaps = 17/368 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LKKYFG+S FR Q+ VI+ +++K D V+M TG GKSLCYQLP L++ TA+VVSPLI+
Sbjct: 10 LKKYFGFSQFRGLQEQVIKSLLKKEDTFVIMPTGGGKSLCYQLPALMSEGTAIVVSPLIA 69
Query: 65 LMQDQVMSLK----QRGINAEFLGSA--QTD-SSVQTKAETGYFQLLFMTPEKACIIPIS 117
LM++QV +++ + GI A L S+ +TD ++V+ G +LL++ PE ++
Sbjct: 70 LMKNQVDAIRSISSENGI-AHVLNSSLNKTDVANVKMDISNGVTKLLYVAPE--SLVKEE 126
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKL-RTFLLGVPFVALTATATEKVR 176
+ L + AVDEAHCISEWGHDFR EY+ L ++ + +P + LTATAT KV+
Sbjct: 127 YAEFLASQTISFLAVDEAHCISEWGHDFRPEYRNLRRIIKGIGDNIPIIGLTATATPKVQ 186
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DI+ +L + ASF+R NLFY V+ + + ++++ + ++ +G I+YC+
Sbjct: 187 EDILKNLGISGANTFKASFNRPNLFYEVRP--KTANVETDIIRFVKQNSEKSG--IIYCL 242
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K VEE+++AL+ G+ A YH + +K R + +F+ ++I V+VAT+AFGMGIDKPD
Sbjct: 243 SRKKVEELAQALQVNGIIAVPYHAGLDAKTRAKHQDMFLMEDIDVVVATIAFGMGIDKPD 302
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD-FYCGESQTENQ-RT 354
VR V+HY PK++ESYYQE+GR GRDG C YYA + K + F G+ E +
Sbjct: 303 VRFVVHYDIPKSIESYYQETGRAGRDGGEGHCLAYYAYKDIEKLEKFMSGKPVAEQEIGN 362
Query: 355 AIMESLLA 362
A+++ ++A
Sbjct: 363 ALLQEVVA 370
>gi|269962279|ref|ZP_06176631.1| ATP-dependent DNA helicase RecQ [Vibrio harveyi 1DA3]
gi|269832982|gb|EEZ87089.1| ATP-dependent DNA helicase RecQ [Vibrio harveyi 1DA3]
Length = 665
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 151/373 (40%), Positives = 218/373 (58%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FR Q+ VI +E RD LV++ TG GKSLCYQ+P LV LV+SPLIS
Sbjct: 74 LEDVFGYQEFRDGQQLVIDAAVEGRDSLVILPTGGGKSLCYQIPALVRSGITLVISPLIS 133
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV LK G+ AE + S SV + TG+ +L++++PE+ ++ F +
Sbjct: 134 LMKDQVDQLKANGVAAECINSTMPREELLSVYNRMHTGHLKLVYVSPER--VLMRDFIER 191
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +L+ VPF+ALTATA + R DI+
Sbjct: 192 LENLPLSMIAVDEAHCISQWGHDFRPEYAALGQLKQQFSHVPFMALTATADDATRRDILE 251
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L+L NP V + SFDR N+ Y + ++ V ++V+ + G I+YC + K V
Sbjct: 252 RLQLNNPEVYLGSFDRPNIRYNLVEKHKP---VSQIVRYLETQKGNCG--IIYCGSRKKV 306
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E +++ L ++A YH M + R F RD+I+++VAT+AFGMGI+KP+VR V+
Sbjct: 307 EMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRFVV 366
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + + Y ++ + E Q+ L
Sbjct: 367 HFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGPQKQVETHKLN 426
Query: 362 AAQRYCLLTTCRR 374
A + TCRR
Sbjct: 427 AMSAFAEAQTCRR 439
>gi|414595339|ref|ZP_11444964.1| ATP-dependent DNA helicase RecQ [Escherichia blattae NBRC 105725]
gi|403193686|dbj|GAB82616.1| ATP-dependent DNA helicase RecQ [Escherichia blattae NBRC 105725]
Length = 630
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 146/338 (43%), Positives = 212/338 (62%), Gaps = 10/338 (2%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+ +I I+ +D LVVM TG GKSLCYQ+P L+ +VVSPLI
Sbjct: 37 VLQETFGYQQFRPGQEAIIDAILGGQDSLVVMPTGGGKSLCYQIPALILDGLTVVVSPLI 96
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q+ +V G +LL++ PE+ ++ S
Sbjct: 97 SLMKDQVDQLLANGVPAACLNSTQSREQQLAVMNGCRHGEIRLLYVAPER--LMMDSLID 154
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
+L + + L AVDEAHCIS+WGHDFR EY L +LR VPFVALTATA + R+DI+
Sbjct: 155 QLSQWKLALLAVDEAHCISQWGHDFRPEYALLGQLRHRFSEVPFVALTATADDTTRLDIV 214
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L LK+P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 215 RLLGLKDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 269
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ AG YH + + R F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 270 VEDTAARLQSRGISAGAYHAGLENDIRARVQEQFQRDDLQIVVATVAFGMGINKPNVRFV 329
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A
Sbjct: 330 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 367
>gi|350565839|ref|ZP_08934569.1| ATP-dependent helicase RecQ [Peptoniphilus indolicus ATCC 29427]
gi|348663378|gb|EGY79961.1| ATP-dependent helicase RecQ [Peptoniphilus indolicus ATCC 29427]
Length = 711
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 152/374 (40%), Positives = 213/374 (56%), Gaps = 17/374 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LKKYFGY FR Q+D+I I+ +D L V+ TG GKS+CYQ+P ++ + +SPLI+
Sbjct: 7 LKKYFGYDNFRSGQEDLINNILNGKDVLGVLPTGGGKSICYQIPAMLIDGLTIFISPLIA 66
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ +GI A + S+Q V+ + E G +LL++ PE+ + + W+K
Sbjct: 67 LMKDQVDDLRLKGIPARLMNSSQDFTQTGEVKNEIENGNIKLLYIAPERLENVFFTQWAK 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L + VDEAHCIS+WGHDFR Y+ + L P V A TATA + VR DII
Sbjct: 127 NL--NISQIVVDEAHCISQWGHDFRPSYRTISSFIQNLNIRPVVSAFTATANQLVRKDII 184
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N L P++ ++SFDR N+++ V+ + + EL+ + S I+YC T K
Sbjct: 185 NQLDQVEPFIHVSSFDRPNIYFAVEEPKDKKERLLELLDK-------CQSQIIYCSTRKL 237
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+EI L+ G G YH + R F++DEI +MV T AFGMGIDKPDVR V
Sbjct: 238 VDEIKDFLQDRGYSVGKYHAGIDITQRNAIQNAFLKDEISIMVCTNAFGMGIDKPDVRQV 297
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG + L ++ + F +S +N +E +
Sbjct: 298 IHYNMPKDIESYYQEAGRAGRDGEPANAILLFSPQDIVTNKFLI-KSNNDNYSYKKLEQM 356
Query: 361 LAAQRYCLLTTCRR 374
+A YC T C R
Sbjct: 357 IA---YCYSTKCLR 367
>gi|421890438|ref|ZP_16321299.1| ATP-dependent DNA helicase [Ralstonia solanacearum K60-1]
gi|378964211|emb|CCF98047.1| ATP-dependent DNA helicase [Ralstonia solanacearum K60-1]
Length = 637
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 154/383 (40%), Positives = 221/383 (57%), Gaps = 16/383 (4%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGK----TALV 58
+ L FGYS FR Q D++ + + DCLV+M TG GKSLCYQ+P LV + +V
Sbjct: 24 AVLHDVFGYSAFRGPQADIVTHVADGGDCLVLMPTGGGKSLCYQIPALVRHRRGQGAGIV 83
Query: 59 VSPLISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIP 115
VSPLI+LMQDQV +L++ G+ A +L SA T + V+ G L+++ PE+ ++
Sbjct: 84 VSPLIALMQDQVAALEEAGVRAAYLNSALTGAEAAQVERDLAAGRLDLVYVAPER--LMT 141
Query: 116 ISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
F L ++ + LFA+DEAHC+S+WGHDFR EY QL L VP +ALTATA
Sbjct: 142 PRFLELLERSRIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPHVPRIALTATADAVT 201
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYC 235
R +I+ L L V ++SFDR N+ Y + + + + ++ G + IVYC
Sbjct: 202 RDEIVERLALGGERVFLSSFDRPNIRYTIVEKDSARQQLLRFIRAEHLGEDGCDAGIVYC 261
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
++ K VEE ++ L + G++A YH M + R +F ++E VMVAT+AFGMGIDKP
Sbjct: 262 LSRKKVEETAQWLAEQGIRALPYHAGMDVETRARHQAIFRKEEGVVMVATIAFGMGIDKP 321
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQR-- 353
DVR V H PK+LE YYQE+GR GRDG+ + W+ Y ++ + ES ++
Sbjct: 322 DVRFVAHLDLPKSLEGYYQETGRAGRDGLPANAWMAYGLADVVQQRRMIDESDADDVHKR 381
Query: 354 --TAIMESLLAAQRYCLLTTCRR 374
TA +++LL C CRR
Sbjct: 382 VSTAKLDALLG---LCESAGCRR 401
>gi|344172736|emb|CCA85390.1| ATP-dependent DNA helicase [Ralstonia syzygii R24]
Length = 637
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 153/383 (39%), Positives = 223/383 (58%), Gaps = 16/383 (4%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGK----TALV 58
+ L FGYS FR Q D++ + + DCLV+M TG GKSLCYQ+P LV + +V
Sbjct: 24 AVLHDVFGYSAFRGPQADIVAHVADGGDCLVLMPTGGGKSLCYQIPALVRHRRGQGAGIV 83
Query: 59 VSPLISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIP 115
VSPLI+LMQDQV +L++ G+ A +L SA + + V+ G L+++ PE+ ++
Sbjct: 84 VSPLIALMQDQVAALEEAGVRAAYLNSALSGAEAAQVERDLAAGRLDLVYVAPER--LMT 141
Query: 116 ISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
F L ++ + LFA+DEAHC+S+WGHDFR EY QL L VP +ALTATA
Sbjct: 142 PRFLELLERSRIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPHVPRIALTATADAVT 201
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYC 235
R +I+ L L V ++SFDR N+ Y + + + + ++ G + IVYC
Sbjct: 202 RDEIVERLALGGARVFLSSFDRPNIRYTIVEKDSARQQLLRFIRAEHIGEDGCDAGIVYC 261
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
++ K VEE ++ L + G++A YH M ++ R +F ++E VMVAT+AFGMGIDKP
Sbjct: 262 LSRKKVEETAQWLAEQGIRALPYHAGMDAEIRTRHQAIFRKEEGVVMVATIAFGMGIDKP 321
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQR-- 353
DVR V H PK+LE YYQE+GR GRDG+ + W+ Y ++ + ES+ ++
Sbjct: 322 DVRFVAHLDLPKSLEGYYQETGRAGRDGLPANAWMAYGLADVVQQRRMIDESEADDVHKR 381
Query: 354 --TAIMESLLAAQRYCLLTTCRR 374
TA +++LL C CRR
Sbjct: 382 VSTAKLDALLG---LCESAGCRR 401
>gi|153834682|ref|ZP_01987349.1| ATP-dependent DNA helicase RecQ [Vibrio harveyi HY01]
gi|148868878|gb|EDL67938.1| ATP-dependent DNA helicase RecQ [Vibrio harveyi HY01]
Length = 611
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 151/373 (40%), Positives = 218/373 (58%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FR Q+ VI +E RD LV++ TG GKSLCYQ+P LV LV+SPLIS
Sbjct: 20 LEDVFGYQEFRDGQQLVIDAAVEGRDSLVILPTGGGKSLCYQIPALVRSGITLVISPLIS 79
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV LK G+ AE + S SV + TG+ +L++++PE+ ++ F +
Sbjct: 80 LMKDQVDQLKANGVAAECINSTMPREELLSVYNRMHTGHLKLVYVSPER--VLMRDFIER 137
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +L+ VPF+ALTATA + R DI+
Sbjct: 138 LENLPLSMIAVDEAHCISQWGHDFRPEYAALGQLKQQFSHVPFMALTATADDATRRDILE 197
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L+L NP V + SFDR N+ Y + ++ V ++V+ + G I+YC + K V
Sbjct: 198 RLQLNNPEVYLGSFDRPNIRYNLVEKHKP---VSQIVRYLETQKGNCG--IIYCGSRKKV 252
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E +++ L ++A YH M + R F RD+I+++VAT+AFGMGI+KP+VR V+
Sbjct: 253 EMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRFVV 312
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + + Y ++ + E Q+ L
Sbjct: 313 HFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGPQKQVETHKLN 372
Query: 362 AAQRYCLLTTCRR 374
A + TCRR
Sbjct: 373 AMSAFAEAQTCRR 385
>gi|424044511|ref|ZP_17782123.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HENC-03]
gi|408887908|gb|EKM26398.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HENC-03]
Length = 611
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 151/373 (40%), Positives = 218/373 (58%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FR Q+ VI +E RD LV++ TG GKSLCYQ+P LV LV+SPLIS
Sbjct: 20 LEDVFGYQEFRDGQQLVIDAAVEGRDSLVILPTGGGKSLCYQIPALVRSGITLVISPLIS 79
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV LK G+ AE + S SV + TG+ +L++++PE+ ++ F +
Sbjct: 80 LMKDQVDQLKANGVAAECINSTMPREELLSVYNRMHTGHLKLVYVSPER--VLMRDFIER 137
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +L+ VPF+ALTATA + R DI+
Sbjct: 138 LENLPLSMIAVDEAHCISQWGHDFRPEYAALGQLKQQFSHVPFMALTATADDATRRDILE 197
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L+L NP V + SFDR N+ Y + ++ V ++V+ + G I+YC + K V
Sbjct: 198 RLQLNNPEVYLGSFDRPNIRYNLVEKHKP---VSQIVRYLETQKGNCG--IIYCGSRKKV 252
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E +++ L ++A YH M + R F RD+I+++VAT+AFGMGI+KP+VR V+
Sbjct: 253 EMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRFVV 312
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + + Y ++ + E Q+ L
Sbjct: 313 HFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGPQKQVETHKLN 372
Query: 362 AAQRYCLLTTCRR 374
A + TCRR
Sbjct: 373 AMSAFAEAQTCRR 385
>gi|449132273|ref|ZP_21768377.1| ATP-dependent DNA helicase RecQ [Rhodopirellula europaea 6C]
gi|448888483|gb|EMB18799.1| ATP-dependent DNA helicase RecQ [Rhodopirellula europaea 6C]
Length = 745
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 156/381 (40%), Positives = 223/381 (58%), Gaps = 25/381 (6%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
S L+ +GY FRP Q D +Q +I+ RD LVV+ TG GKSLCYQ+P LV ++VVSPL
Sbjct: 26 SVLRSVWGYDSFRPLQADAVQDVIQGRDSLVVLPTGGGKSLCYQVPALVRDGMSVVVSPL 85
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET------GYFQLLFMTPEKACIIPI 116
ISLM+DQV +L G++A + S Q SV+ K ET G ++L++ PE+ + P
Sbjct: 86 ISLMKDQVDALTSNGVSAALVNSTQ---SVEQKRETAERIRRGEIKILYLAPER-LLTPK 141
Query: 117 SFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
+ L + FA+DEAHC+S WGHDFR EY+ L L+ A TATA+E+VR
Sbjct: 142 TL-DFLRSLPISFFAIDEAHCVSNWGHDFRPEYRGLRILKEQFPSASVHAFTATASEQVR 200
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DI L+L P V + FDR NL Y + R ++++ Q I + +G +VYC+
Sbjct: 201 DDIAEQLQLNQPNVLVGDFDRPNLTYRML---RADGKLNQIQQCIAQHPGESG--VVYCI 255
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
T K+VE+ + AL+ +G++ YH + + R+ FI++++ V+VAT+AFGMGIDK +
Sbjct: 256 TRKEVEQTAGALESMGIRTLPYHAGLPDEVRQANQEAFIQEKVDVIVATVAFGMGIDKSN 315
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCG----ESQTENQ 352
VR VIH G PK++E Y QESGR GRDG+A+ C L + + GD E+ N
Sbjct: 316 VRFVIHAGMPKSIEHYQQESGRAGRDGLAAECILLH-----SGGDLMSWKRILENGDRNN 370
Query: 353 RTAIMESLLAAQRYCLLTTCR 373
+ M S+ + C CR
Sbjct: 371 FQSAMASVESMAALCNGVKCR 391
>gi|340781475|ref|YP_004748082.1| ATP-dependent DNA helicase RecQ [Acidithiobacillus caldus SM-1]
gi|340555628|gb|AEK57382.1| ATP-dependent DNA helicase RecQ [Acidithiobacillus caldus SM-1]
Length = 611
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 161/374 (43%), Positives = 221/374 (59%), Gaps = 9/374 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FG+S FRP Q VI R++ D LV+M TG GKSLCYQ+P L TA+VVSPLI+
Sbjct: 12 LQHVFGFSDFRPPQDAVIARLLGGGDALVLMPTGGGKSLCYQVPALTLPGTAVVVSPLIA 71
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET---GYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L+Q G++A L S Q E G +LL++ PE+ ++
Sbjct: 72 LMEDQVQALQQYGVSAHALHSGLGVDETQRIEEALSRGEIKLLYVAPER--LLQERSLRL 129
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + LFA+DEAHC+S+WGHDFR EY +L L VP VALTATA + R +I +
Sbjct: 130 LARLDISLFAIDEAHCVSQWGHDFRPEYLRLQLLHERFPSVPRVALTATADPRTREEIRS 189
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L V SFDR N+ Y ++ + G+S +L+ I + A S IVYC++ K V
Sbjct: 190 RLGLLQAPVFQRSFDRPNIHY--RLQSGGESGRQQLLHFIHQYHA-KDSGIVYCLSRKRV 246
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
EE ++ LK+ G+ A YH + + R +F DE+R++VAT+AFGMGIDKPDVR V
Sbjct: 247 EETAQWLKEQGLSALPYHAGLDAATRRRHQAMFQNDEVRIVVATIAFGMGIDKPDVRFVA 306
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI-MESL 360
H PK+LESYYQE+GR GRDG+ + WL+Y + + +S + A+ +E L
Sbjct: 307 HLNLPKSLESYYQETGRAGRDGLPADAWLHYGLQDVVQLRQMIQQSGADAAHKALELERL 366
Query: 361 LAAQRYCLLTTCRR 374
A C CRR
Sbjct: 367 EAMLGLCETVGCRR 380
>gi|200386748|ref|ZP_03213360.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|205358016|ref|ZP_02574990.2| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|419729880|ref|ZP_14256835.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|419733429|ref|ZP_14260327.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|419739272|ref|ZP_14266022.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|419744302|ref|ZP_14270957.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|419747546|ref|ZP_14274055.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|421568554|ref|ZP_16014270.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|421573152|ref|ZP_16018793.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|421577825|ref|ZP_16023409.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|421585417|ref|ZP_16030915.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|422028195|ref|ZP_16374511.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|422033246|ref|ZP_16379328.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|427556417|ref|ZP_18929834.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|427573922|ref|ZP_18934425.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|427595457|ref|ZP_18939339.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|427620224|ref|ZP_18944221.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|427643553|ref|ZP_18949109.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|427658213|ref|ZP_18953833.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|427663471|ref|ZP_18958735.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|427680435|ref|ZP_18963628.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
gi|427801523|ref|ZP_18969078.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm5]
gi|19859341|sp|P40724.3|RECQ_SALTY RecName: Full=ATP-dependent DNA helicase RecQ
gi|199603846|gb|EDZ02391.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|205328138|gb|EDZ14902.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|381295573|gb|EIC36683.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|381299619|gb|EIC40690.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|381300148|gb|EIC41212.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|381309157|gb|EIC49998.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|381316946|gb|EIC57683.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|402526073|gb|EJW33352.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|402529061|gb|EJW36309.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|402529843|gb|EJW37071.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|402530062|gb|EJW37285.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|414012332|gb|EKS96254.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|414013685|gb|EKS97561.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|414013736|gb|EKS97610.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|414027502|gb|EKT10730.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|414028451|gb|EKT11639.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|414030693|gb|EKT13785.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|414041738|gb|EKT24296.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|414042549|gb|EKT25086.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|414046946|gb|EKT29251.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|414055658|gb|EKT37543.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
gi|414061964|gb|EKT43335.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm5]
Length = 609
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 220/375 (58%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+ +I + RDCLVVM TG GKSLCYQ+P L+ +VVSPLI
Sbjct: 16 VLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLI 75
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q+ V TG +LL++ PE+ ++ +F
Sbjct: 76 SLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQIRLLYIAPER--LMLDNFLD 133
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DII
Sbjct: 134 HLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTTRQDII 193
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 194 RLLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 248
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 249 VEDTAARLQSRGISAAAYHAGLENAIRVDVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 308
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I
Sbjct: 309 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPAGQLQDIERHK 367
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 368 LNAMGAFAEAQTCRR 382
>gi|410639269|ref|ZP_11349819.1| ATP-dependent DNA helicase RecQ [Glaciecola chathamensis S18K6]
gi|410648965|ref|ZP_11359360.1| ATP-dependent DNA helicase RecQ [Glaciecola agarilytica NO2]
gi|410131472|dbj|GAC07759.1| ATP-dependent DNA helicase RecQ [Glaciecola agarilytica NO2]
gi|410141191|dbj|GAC08006.1| ATP-dependent DNA helicase RecQ [Glaciecola chathamensis S18K6]
Length = 604
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 146/376 (38%), Positives = 227/376 (60%), Gaps = 13/376 (3%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ LK FGY FR Q++VI++I++ +D LV+M TG GKSLCYQ+P LV +V+SPL
Sbjct: 16 NVLKNVFGYDAFRDGQREVIEQILQGKDVLVLMPTGGGKSLCYQIPALVLDGLTIVISPL 75
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFW 119
I+LM+DQV +L G++A ++ S ++ +V + G ++L+++ PE+ ++ F
Sbjct: 76 IALMKDQVDALVASGVSAAYINSNLSNEEMLNVYRGMQDGRYKLIYVAPER--LMQFDFI 133
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L V LFAVDEAHC+S WGHDFR EY+QL +++ GVP V LTATA R DI
Sbjct: 134 QRLHSLNVALFAVDEAHCVSHWGHDFRKEYRQLGQIKQQFPGVPVVGLTATADITTRSDI 193
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGA-GSIIVYCMTI 238
+ L L+ P+V SFDR N+ Y Q F + ++++ V GS I+YC +
Sbjct: 194 LQQLALEQPFVFKGSFDRPNIRYN-------QLFKYKATDQVIQYVKQQDGSGIIYCNSR 246
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K V+++S AL + G+ YH + R++ R FI+D + ++VAT+AFGMGI+K +VR
Sbjct: 247 KKVDDLSIALAKQGINCAGYHAGLEGPIRDKIQRDFIQDNVDIIVATVAFGMGINKSNVR 306
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+H+ P+++E+YYQE+GR GRDG+ + L + + A+ + G + ++
Sbjct: 307 FVVHFDLPRSVEAYYQETGRAGRDGMPAEALLLFDEKDAARIRQWIGMGDNPARLDIELQ 366
Query: 359 SLLAAQRYCLLTTCRR 374
A + + TCRR
Sbjct: 367 KFAAMEAFAEAQTCRR 382
>gi|350529733|ref|ZP_08908674.1| ATP-dependent DNA helicase RecQ [Vibrio rotiferianus DAT722]
Length = 611
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 151/373 (40%), Positives = 218/373 (58%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FR Q+ VI +E RD LV++ TG GKSLCYQ+P LV LV+SPLIS
Sbjct: 20 LEDVFGYQEFRDGQQLVIDAAVEGRDSLVILPTGGGKSLCYQIPALVRSGITLVISPLIS 79
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV LK G+ AE + S SV + TG+ +L++++PE+ ++ F +
Sbjct: 80 LMKDQVDQLKANGVAAECINSTMPREELLSVYNRMHTGHLKLVYVSPER--VLMRDFIER 137
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +L+ VPF+ALTATA + R DI+
Sbjct: 138 LENLPLSMIAVDEAHCISQWGHDFRPEYAALGQLKQQFSHVPFMALTATADDATRRDILE 197
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L+L NP V + SFDR N+ Y + ++ V ++V+ + G I+YC + K V
Sbjct: 198 RLQLNNPEVYLGSFDRPNIRYNLVEKHKP---VSQIVRYLETQKGNCG--IIYCGSRKKV 252
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E +++ L ++A YH M + R F RD+I+++VAT+AFGMGI+KP+VR V+
Sbjct: 253 EMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRFVV 312
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + + Y ++ + E Q+ L
Sbjct: 313 HFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGPQKQVETHKLN 372
Query: 362 AAQRYCLLTTCRR 374
A + TCRR
Sbjct: 373 AMSAFAEAQTCRR 385
>gi|348026653|ref|YP_004766458.1| ATP-dependent DNA helicase RecQ [Megasphaera elsdenii DSM 20460]
gi|341822707|emb|CCC73631.1| ATP-dependent DNA helicase RecQ [Megasphaera elsdenii DSM 20460]
Length = 606
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 156/378 (41%), Positives = 223/378 (58%), Gaps = 14/378 (3%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
S LK+YFGY+ FRP Q +VIQ ++E RDCL +M TG+GKS+C+QLP L+ LV+SPL
Sbjct: 5 SLLKQYFGYTSFRPGQHEVIQTLLEGRDCLAIMPTGAGKSICFQLPALMMPGVTLVISPL 64
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFW 119
ISLM+DQV SL + I A ++ S T + + G +L++++PE+ + F+
Sbjct: 65 ISLMKDQVDSLVNQEIPATYINSQCTFEEAKARFAAIRAGRVKLVYISPER---LENEFF 121
Query: 120 SKLLKA-GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRI 177
+ +++ + +F +DEAHC+S+WGHDFR Y + L P V A TATATEKV+
Sbjct: 122 TSFMQSLPISMFIIDEAHCVSQWGHDFRPSYCAIKDWIVALPRRPVVGAFTATATEKVKE 181
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
D++ L L+ + I FDR NL++ V NR F VQ+ + S I+Y T
Sbjct: 182 DMMTLLGLEKERIFIGGFDRPNLYFRVVRTNRKLDFALAYVQQHQED-----SGIIYAAT 236
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K+V+ + + L + G++AG YH + R F D ++V+VAT AFGMGIDK +V
Sbjct: 237 RKEVDRVYEELTRRGIRAGRYHAGLSDDVRRTMQDAFTYDRLQVIVATNAFGMGIDKSNV 296
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R+VIHY PK +ESYYQE+GR GRDG C L ++R + F +S + Q+ A+
Sbjct: 297 RYVIHYQMPKNIESYYQEAGRAGRDGAPGECILLFSRQDIMIQKFLIEQSVHDPQQQAVE 356
Query: 358 ESLLAAQ-RYCLLTTCRR 374
LL A RYC C R
Sbjct: 357 FRLLNAMVRYCEGNHCLR 374
>gi|387891019|ref|YP_006321317.1| ATP-dependent DNA helicase RecQ [Escherichia blattae DSM 4481]
gi|386925852|gb|AFJ48806.1| ATP-dependent DNA helicase RecQ [Escherichia blattae DSM 4481]
Length = 609
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 146/338 (43%), Positives = 212/338 (62%), Gaps = 10/338 (2%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+ +I I+ +D LVVM TG GKSLCYQ+P L+ +VVSPLI
Sbjct: 16 VLQETFGYQQFRPGQEAIIDAILGGQDSLVVMPTGGGKSLCYQIPALILDGLTVVVSPLI 75
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q+ +V G +LL++ PE+ ++ S
Sbjct: 76 SLMKDQVDQLLANGVPAACLNSTQSREQQLAVMNGCRHGEIRLLYVAPER--LMMDSLID 133
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
+L + + L AVDEAHCIS+WGHDFR EY L +LR VPFVALTATA + R+DI+
Sbjct: 134 QLSQWKLALLAVDEAHCISQWGHDFRPEYALLGQLRHRFSEVPFVALTATADDTTRLDIV 193
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L LK+P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 194 RLLGLKDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 248
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ AG YH + + R F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 249 VEDTAARLQSRGISAGAYHAGLENDIRARVQEQFQRDDLQIVVATVAFGMGINKPNVRFV 308
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A
Sbjct: 309 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346
>gi|386332140|ref|YP_006028309.1| atp-dependent dna helicase protein [Ralstonia solanacearum Po82]
gi|334194588|gb|AEG67773.1| atp-dependent dna helicase protein [Ralstonia solanacearum Po82]
Length = 648
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 154/383 (40%), Positives = 221/383 (57%), Gaps = 16/383 (4%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGK----TALV 58
+ L FGYS FR Q D++ + + DCLV+M TG GKSLCYQ+P LV + +V
Sbjct: 35 AVLHDVFGYSAFRGPQADIVTHVADGGDCLVLMPTGGGKSLCYQIPALVRHRRGQGAGIV 94
Query: 59 VSPLISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIP 115
VSPLI+LMQDQV +L++ G+ A +L SA T + V+ G L+++ PE+ ++
Sbjct: 95 VSPLIALMQDQVAALEEAGVRAAYLNSALTGTEAAQVERDLAAGRLDLVYVAPER--LMT 152
Query: 116 ISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
F L ++ + LFA+DEAHC+S+WGHDFR EY QL L VP +ALTATA
Sbjct: 153 PRFLELLERSRIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPHVPRIALTATADAVT 212
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYC 235
R +I+ L L V ++SFDR N+ Y + + + + ++ G + IVYC
Sbjct: 213 RDEIVERLALGGERVFLSSFDRPNIRYTIVEKDSARQQLLRFIRAEHLGEDGCDAGIVYC 272
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
++ K VEE ++ L + G++A YH M + R +F ++E VMVAT+AFGMGIDKP
Sbjct: 273 LSRKKVEETAQWLAEQGIRALPYHAGMDVETRARHQAIFRKEEGVVMVATIAFGMGIDKP 332
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQR-- 353
DVR V H PK+LE YYQE+GR GRDG+ + W+ Y ++ + ES ++
Sbjct: 333 DVRFVAHLDLPKSLEGYYQETGRAGRDGLPANAWMAYGLADVVQQRRMIDESDADDVHKR 392
Query: 354 --TAIMESLLAAQRYCLLTTCRR 374
TA +++LL C CRR
Sbjct: 393 VSTAKLDALLG---LCESAGCRR 412
>gi|257790820|ref|YP_003181426.1| ATP-dependent DNA helicase RecQ [Eggerthella lenta DSM 2243]
gi|257474717|gb|ACV55037.1| ATP-dependent DNA helicase RecQ [Eggerthella lenta DSM 2243]
Length = 681
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 158/384 (41%), Positives = 223/384 (58%), Gaps = 18/384 (4%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
LK++FGY FRP Q+ V++ I+ RD L VM TG+GKS+CYQ+P +V ALVVSPL+
Sbjct: 10 ALKQHFGYEAFRPGQEGVVEAILGCRDALAVMPTGAGKSVCYQVPGVVMDGLALVVSPLV 69
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM DQV +L GI +L S T S+V +A G +Q++++ PE+ + F
Sbjct: 70 SLMGDQVRALLDAGIRGAYLNSTLTPGQQSTVLRRALDGAYQIMYVAPER--LADPRFLE 127
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATE-KVRIDI 179
+A + L AVDEAHC+S+WG DFR Y + L P VA +VR DI
Sbjct: 128 FAQRAAIPLVAVDEAHCVSQWGQDFRPSYLTIGDFIAQLPSRPVVAAFTATATARVRADI 187
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+ L L++PY + FDR NL++GV+ ++ + + + L+ +G IVYC T K
Sbjct: 188 VRLLDLRDPYEVVTGFDRPNLYFGVERLDPKRK-IARIAGYALEHAGDSG--IVYCSTRK 244
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
D +++ AL + G++A YH M + R E+ R FI D+ VMVAT AFGMGIDK +VR+
Sbjct: 245 DTDKVHAALLEAGIRAARYHAGMSAADRAESQRAFIADDAPVMVATNAFGMGIDKSNVRY 304
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYC-----GESQTENQRT 354
VIH+ P ++E+YYQE+GR GRDG S C LY++ + + F+ E T +
Sbjct: 305 VIHHNMPGSIEAYYQEAGRAGRDGEPSTCLLYWSDGDVSTCRFFIEQESGNEELTPEEAD 364
Query: 355 AIMES---LLAAQR-YCLLTTCRR 374
A+ S LLAA YC T C R
Sbjct: 365 AVRASRRRLLAAMTGYCHTTGCLR 388
>gi|383766435|ref|YP_005445416.1| ATP-dependent DNA helicase RecQ [Phycisphaera mikurensis NBRC
102666]
gi|381386703|dbj|BAM03519.1| ATP-dependent DNA helicase RecQ [Phycisphaera mikurensis NBRC
102666]
Length = 657
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 158/400 (39%), Positives = 227/400 (56%), Gaps = 34/400 (8%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKT----- 55
+++ LK+ FG+ FRP Q+ +++ + RD LV++ TG GKSLCYQLP + +
Sbjct: 9 LLAPLKRAFGHGGFRPMQQRIVEDAVAGRDVLVILPTGGGKSLCYQLPAVAEAEAWEQRR 68
Query: 56 ------ALVVSPLISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFM 106
+VVSPLI+LMQ+QV +L+ G+ A +L S+ + VQ +AETG L+++
Sbjct: 69 EGPRPMTVVVSPLIALMQNQVEALRANGVKAGYLNSSMDFEEARRVQHEAETGGLDLVYL 128
Query: 107 TPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFL----LGV 162
PE+ W L + V FA+DEAHCIS WGHDFR EY+ L +LRT GV
Sbjct: 129 APERMMSEHGRAW--LSRLHVTRFAIDEAHCISAWGHDFRPEYRMLGELRTGFGDRFRGV 186
Query: 163 PFVALTATATEKVRIDIINSLKLKNPY---------VTIASFDRKNLFYGVKVINRGQSF 213
P +ALTATAT +V D++ L L V F+R NLFY V R +
Sbjct: 187 PMMALTATATPRVADDVVAQLGLGGDAKPGEAGAVAVHRGGFERPNLFYEV----RPKRK 242
Query: 214 VDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRL 273
V E + +L++ A I VYC + K EEI++ L+ G+ A YH + ++ R E
Sbjct: 243 VVEQIAAMLEADDTAEGI-VYCGSRKKCEEIAEQLQAAGLPALPYHAGLDAETRAENQHG 301
Query: 274 FIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYA 333
FI + R++ AT+AFGMG+DKPDVR V+H P+ LE YYQE+GR GRDG+ C L+Y+
Sbjct: 302 FIYGDCRLVAATIAFGMGVDKPDVRFVVHADLPQNLEGYYQETGRAGRDGLPGKCVLFYS 361
Query: 334 RSNFAKGDFYCGESQTENQRTAIMESLLAAQRYCLLTTCR 373
+ A+ +F+ + + +R E L +YC T CR
Sbjct: 362 GGDRARVEFFINKKEDPQEREHAQEQLEKMIKYCHTTGCR 401
>gi|262273198|ref|ZP_06051014.1| ATP-dependent DNA helicase RecQ [Grimontia hollisae CIP 101886]
gi|262222776|gb|EEY74085.1| ATP-dependent DNA helicase RecQ [Grimontia hollisae CIP 101886]
Length = 616
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 153/375 (40%), Positives = 217/375 (57%), Gaps = 10/375 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ L++ FGY +R QK++I I RD LV+M TG GKSLCYQ+P LV +V+SPL
Sbjct: 18 TVLQQVFGYHSYRDGQKEIIDATIGGRDALVIMPTGGGKSLCYQIPALVRDGVTIVISPL 77
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFW 119
ISLM+DQV L G+ A L S+ T S + G +LL+++PE+ I+ F
Sbjct: 78 ISLMKDQVDQLLANGVQAACLNSSMTPESQSDTWQALRNGNLKLLYVSPER--ILMRDFI 135
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L + L AVDEAHCIS+WGHDFR EY QL L+ GVP +ALTATA + R DI
Sbjct: 136 ERLQAVTLGLIAVDEAHCISQWGHDFRPEYAQLGSLKQHFPGVPVMALTATADDTTRQDI 195
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
L L +P++ + SFDR N+ Y ++ + + +L Q + +G IVYC + K
Sbjct: 196 CQRLALVDPHIYLGSFDRPNIRY--TLVEKHKPLA-QLTQFLATQSGQSG--IVYCNSRK 250
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
VE++++ L ++A YH M + R F RD+++++VAT+AFGMGI+KP+VR
Sbjct: 251 RVEQVAEKLMGSNIRAAAYHAGMTADQRAWVQEAFQRDDVQIVVATVAFGMGINKPNVRF 310
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V+HY P+ +ESYYQE+GR GRDG+ + L+Y S+ E Q+
Sbjct: 311 VVHYDIPRNIESYYQETGRAGRDGLPAEAILFYDPSDIGWLHRCLEEKPDGEQKRVESHK 370
Query: 360 LLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 371 LNAMGAFAEALTCRR 385
>gi|207744581|ref|YP_002260973.1| atp-dependent dna helicase protein [Ralstonia solanacearum IPO1609]
gi|206595987|emb|CAQ62914.1| atp-dependent dna helicase protein [Ralstonia solanacearum IPO1609]
Length = 648
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 154/383 (40%), Positives = 221/383 (57%), Gaps = 16/383 (4%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGK----TALV 58
+ L FGYS FR Q D++ + + DCLV+M TG GKSLCYQ+P LV + +V
Sbjct: 35 AVLHDVFGYSAFRGPQADIVTHVADGGDCLVLMPTGGGKSLCYQIPALVRHRRGQGAGIV 94
Query: 59 VSPLISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIP 115
VSPLI+LMQDQV +L++ G+ A +L SA T + V+ G L+++ PE+ ++
Sbjct: 95 VSPLIALMQDQVAALEEAGVRAAYLNSALTGTEAAQVERDLAAGRLDLVYVAPER--LMT 152
Query: 116 ISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
F L ++ + LFA+DEAHC+S+WGHDFR EY QL L VP +ALTATA
Sbjct: 153 PRFLELLERSRIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPHVPRIALTATADAVT 212
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYC 235
R +I+ L L V ++SFDR N+ Y + + + + ++ G + IVYC
Sbjct: 213 RDEIVERLALGGERVFLSSFDRPNIRYTIVEKDSARQQLLRFIRAEHLGEDGCDAGIVYC 272
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
++ K VEE ++ L + G++A YH M + R +F ++E VMVAT+AFGMGIDKP
Sbjct: 273 LSRKKVEETAQWLAEQGIRALPYHAGMDVETRARHQAIFRKEEGVVMVATIAFGMGIDKP 332
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQR-- 353
DVR V H PK+LE YYQE+GR GRDG+ + W+ Y ++ + ES ++
Sbjct: 333 DVRFVAHLDLPKSLEGYYQETGRAGRDGLPANAWMAYGLADVVQQRRMIDESDADDVHKR 392
Query: 354 --TAIMESLLAAQRYCLLTTCRR 374
TA +++LL C CRR
Sbjct: 393 VSTAKLDALLG---LCESAGCRR 412
>gi|16767228|ref|NP_462843.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|168244648|ref|ZP_02669580.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|194447354|ref|YP_002047969.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|374979455|ref|ZP_09720791.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|378447302|ref|YP_005234934.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|378452860|ref|YP_005240220.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|378701824|ref|YP_005183782.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|378986647|ref|YP_005249803.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|378991246|ref|YP_005254410.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|379703206|ref|YP_005244934.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|383498567|ref|YP_005399256.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
serovar Typhimurium str. 798]
gi|386589323|ref|YP_006085723.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. B182]
gi|6960244|gb|AAF33434.1| S. typhimurium DNA-dependent ATPase DNA helicase (RECQ)
(SP:P40724); contains similarity to Pfam families PF0057
(HRDC domain, score=130.4, E=3.3e-35, N=1), PF00270
(DEAD/DEAH box helicase, score=121.6, E=1.5e-37, N=1)
and PF00271 (Helicases conserved C-terminal domain,
score=99.8, E=5.3e-26, N=1) [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|16422522|gb|AAL22802.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|194405658|gb|ACF65877.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|205336505|gb|EDZ23269.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|261249081|emb|CBG26942.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267996239|gb|ACY91124.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301160473|emb|CBW20003.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312915076|dbj|BAJ39050.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|321225476|gb|EFX50533.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|323132305|gb|ADX19735.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|332990793|gb|AEF09776.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|380465388|gb|AFD60791.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
serovar Typhimurium str. 798]
gi|383796367|gb|AFH43449.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. B182]
Length = 615
Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 220/375 (58%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+ +I + RDCLVVM TG GKSLCYQ+P L+ +VVSPLI
Sbjct: 22 VLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLI 81
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q+ V TG +LL++ PE+ ++ +F
Sbjct: 82 SLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQIRLLYIAPER--LMLDNFLD 139
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DII
Sbjct: 140 HLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTTRQDII 199
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 200 RLLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 254
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 255 VEDTAARLQSRGISAAAYHAGLENAIRVDVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 314
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I
Sbjct: 315 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPAGQLQDIERHK 373
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 374 LNAMGAFAEAQTCRR 388
>gi|398338006|ref|ZP_10522711.1| DNA helicase [Leptospira kmetyi serovar Malaysia str. Bejo-Iso9]
Length = 626
Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 160/383 (41%), Positives = 234/383 (61%), Gaps = 15/383 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKT-ALVV 59
+ S+LK+ +G S FR Q++ I+ ++ +D LV++ TG GKSL YQLP + + LV+
Sbjct: 12 LESSLKEIWGMSRFRIGQREAIESVLGGKDTLVILPTGGGKSLIYQLPAAIDSSSLTLVI 71
Query: 60 SPLISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPI 116
SPLI+LM+DQV SLK +GI+AE+ S Q D + ++A TG ++L+++PEKA +
Sbjct: 72 SPLIALMKDQVDSLKAKGISAEYCNSTQDDLEQLRILSRAATGKIRILYLSPEKA--LSR 129
Query: 117 SFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR-TFLLGVPFVALTATATEKV 175
+ L K + AVDEAHC+S+WGHDFR EY++L +LR F VP +ALTATAT +V
Sbjct: 130 QVFEILPKLPLGRIAVDEAHCVSQWGHDFRPEYRKLYELRDKFPKFVPIIALTATATSRV 189
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILK---SVAGAGSII 232
DI +SL LK P + SF R+NL + ++ S EL++ +++ +G I
Sbjct: 190 IQDISDSLGLKEPALVKGSFFRENLNFSIRFPQNETSRESELLKLLIQGNFQKTASGRAI 249
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
+YC T + VE + + LK+ G K G YH +RE+ + + V+VAT AFGMG+
Sbjct: 250 IYCATRQKVESVYEFLKKNGFKVGKYHAGRTDSSREKTQDGYSAGKTNVLVATNAFGMGL 309
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ 352
D PDVR V+HY P +LESYYQE+GR GRDG +S C L+Y S+ F G+ E+
Sbjct: 310 DSPDVRLVVHYQSPASLESYYQEAGRAGRDGKSSSCVLFYHPSDLVTQSFIIGK---ESN 366
Query: 353 RTAIMESLLA-AQRYCLLTTCRR 374
R E+LL+ + Y + CR+
Sbjct: 367 RKG-GETLLSFVKEYAVSNRCRQ 388
>gi|333894935|ref|YP_004468810.1| ATP-dependent DNA helicase [Alteromonas sp. SN2]
gi|332994953|gb|AEF05008.1| ATP-dependent DNA helicase [Alteromonas sp. SN2]
Length = 612
Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 146/375 (38%), Positives = 224/375 (59%), Gaps = 11/375 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ LK FGY FR Q DVI + D LV++ TG GKS+CYQ+P L+ T +VVSPL
Sbjct: 22 NVLKNVFGYDEFREGQGDVIHHVCHGGDALVLLPTGGGKSMCYQIPALIRAGTGIVVSPL 81
Query: 63 ISLMQDQVMSLKQRGINAEFLGS--AQTD-SSVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLMQDQV LK G+ A +L S +Q D +S+ + + LL+++PE+ ++ F
Sbjct: 82 ISLMQDQVEQLKALGVKAAYLNSTLSQEDQASISEQMVSNQLDLLYVSPER--LLQFGFQ 139
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
L V LFA+DEAHC+S WGHDFR +Y+ L +++ +P + LTATA + DI
Sbjct: 140 QTLRTTEVALFAIDEAHCVSHWGHDFRHDYRALGQIKARFPDIPVIGLTATADIATQSDI 199
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+ L+L +P V SFDR N+ Y +V+++ ++F E V +K G+G I+YC +
Sbjct: 200 LTQLQLNDPLVYKGSFDRPNIRY--RVMSKYKAF--EQVVTYVKQQEGSG--IIYCNSRA 253
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+++ L + G + YH M + RE R F+ D+I ++VAT+AFGMGI+K +VR+
Sbjct: 254 KVDDLHAKLFKQGFRCAAYHAGMDADERELVQRQFLNDKIDIVVATVAFGMGINKSNVRY 313
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V+H+ P+++ESYYQE+GR GRDG+ S L + + A+ + + + ++ ++
Sbjct: 314 VVHHDVPRSVESYYQETGRAGRDGLESEAMLLFDEKDAARVRQWIEQGEQADRNAIELQK 373
Query: 360 LLAAQRYCLLTTCRR 374
A + + TCRR
Sbjct: 374 FAAMEAFSEAQTCRR 388
>gi|237747534|ref|ZP_04578014.1| ATP-dependent DNA helicase [Oxalobacter formigenes OXCC13]
gi|229378896|gb|EEO28987.1| ATP-dependent DNA helicase [Oxalobacter formigenes OXCC13]
Length = 608
Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 156/380 (41%), Positives = 218/380 (57%), Gaps = 16/380 (4%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L+ FGYS FR Q+++I I D LV+M TG GKSLCYQ+P LV +V+SP
Sbjct: 10 LEILQSVFGYSSFRDQQEEIIAEIASGHDALVLMPTGGGKSLCYQIPALVRDGVGIVISP 69
Query: 62 LISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LI+LMQDQV +L+ G+ A +L S + S ++ L+++ PE+
Sbjct: 70 LIALMQDQVDALETAGVRAAYLNSTLSYEEASRIERAVLKNELDLVYIAPERLVTERCLN 129
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
W L K + LFA+DEAHC+S+WGHDFR EY QL L + VP +ALTATA R +
Sbjct: 130 W--LSKTKIALFAIDEAHCVSQWGHDFRPEYIQLSILHEYFPAVPRIALTATADAHTRAE 187
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I++ LKL+N I+SFDR N+ Y + G+ + + +Q AG IVYC++
Sbjct: 188 ILSRLKLENSRQFISSFDRPNIRYCIVEKENGRHQLLDFIQSEHPGDAG----IVYCLSR 243
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K V+E+ L + + A YH M ++ R F+R+E VMVAT+AFGMGIDKPDVR
Sbjct: 244 KKVDEMVAFLLEHHINALPYHAGMDTQTRSVNQSRFLREEGIVMVATIAFGMGIDKPDVR 303
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQT--ENQRTAI 356
V H PK++E YYQE+GR GRDG + W+ Y + + ES E++R I
Sbjct: 304 FVAHLDLPKSMEGYYQETGRAGRDGNPATAWMSYGLQDVVQQRRMIDESDADPEHRRIQI 363
Query: 357 --MESLLAAQRYCLLTTCRR 374
+++LL +C TCRR
Sbjct: 364 GKLDALLG---FCETLTCRR 380
>gi|37927349|pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 154/376 (40%), Positives = 220/376 (58%), Gaps = 16/376 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVV TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVXPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
L +DQV L+ G+ A L S QT V T TG +LL++ PE+ + +F
Sbjct: 77 LXKDQVDQLQANGVAAACLNSTQTREQQLEVXTGCRTGQIRLLYIAPERLXLD--NFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFXALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSF--VDELVQEILKSVAGAGSIIVYCMTIK 239
L L +P + I+SFDR N+ Y + + F +D+L + + + +G I+YC +
Sbjct: 195 LLGLNDPLIQISSFDRPNIRYXLX-----EKFKPLDQLXRYVQEQRGKSG--IIYCNSRA 247
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
VE+ + L+ G+ A YH + + R + F RD+++++VAT+AFG GI+KP+VR
Sbjct: 248 KVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGXGINKPNVRF 307
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI-ME 358
V+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I
Sbjct: 308 VVHFDIPRNIESYYQETGRAGRDGLPAEAXLFYDPADXAWLR-RCLEEKPQGQLQDIERH 366
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 367 KLNAXGAFAEAQTCRR 382
>gi|394988714|ref|ZP_10381549.1| ATP-dependent DNA helicase RecQ [Sulfuricella denitrificans skB26]
gi|393792093|dbj|GAB71188.1| ATP-dependent DNA helicase RecQ [Sulfuricella denitrificans skB26]
Length = 616
Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 158/385 (41%), Positives = 221/385 (57%), Gaps = 30/385 (7%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L FGYS FR Q+ +++ + D LV+M TG GKSLCYQLP L+ +VVSPLI+
Sbjct: 10 LHDVFGYSAFRDEQQAIVEHVTSGGDALVLMPTGGGKSLCYQLPALLRHGVGIVVSPLIA 69
Query: 65 LMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV +LKQ G+ A FL S A V + G +L++ PE+ ++ +F S
Sbjct: 70 LMQDQVDALKQLGVKAAFLNSSLAADAARDVFGRLMRGDLDILYVAPER--LLMANFLSA 127
Query: 122 LLK----AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
L + G+ LFA+DEAHC+S+WGHDFR EY++L L VP +ALTATA R
Sbjct: 128 LEQVQAGPGLALFAIDEAHCVSQWGHDFRPEYRELTVLHERFPAVPRIALTATADAPTRR 187
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGV--KVINRGQSFVDELVQEILKSVAGAGSIIVYC 235
+I+ L L+ + ++SFDR N+ Y V K R Q +Q L++ + IVYC
Sbjct: 188 EIVERLALEQAHQFVSSFDRPNIRYRVALKANARNQ------LQAFLETEHANDAGIVYC 241
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
++ K V+E + LK+ G A YH + + R R F+R+E +MVAT+AFGMGIDKP
Sbjct: 242 LSRKKVDETAAWLKEKGWDALPYHAGLDAATRNANQRRFLREEGVIMVATVAFGMGIDKP 301
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYA-------RSNFAKGDFYCGESQ 348
+VR V H PK++E YYQE+GR GRDG+ + W+ Y R + GD +
Sbjct: 302 NVRFVAHLDLPKSMEGYYQETGRAGRDGLPADAWMTYGLGDVVSMRQMLSSGDAPAERKR 361
Query: 349 TENQRTAIMESLLAAQRYCLLTTCR 373
E Q+ +++LL +C T CR
Sbjct: 362 VELQK---LDALLG---FCEATACR 380
>gi|373111502|ref|ZP_09525757.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CCUG 10230]
gi|423131855|ref|ZP_17119530.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CCUG 12901]
gi|423135590|ref|ZP_17123236.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CIP 101113]
gi|423330145|ref|ZP_17307945.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CCUG 3837]
gi|371640169|gb|EHO05774.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CCUG 10230]
gi|371640694|gb|EHO06290.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CIP 101113]
gi|371640856|gb|EHO06450.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CCUG 12901]
gi|404602617|gb|EKB02313.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CCUG 3837]
Length = 731
Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 156/379 (41%), Positives = 233/379 (61%), Gaps = 19/379 (5%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK++FG+S F+ Q+DV++ II + V+M TG GKSLCYQLP LV TA+VVSPLI+
Sbjct: 12 LKRFFGFSQFKGLQEDVVKSIISGHNTFVIMPTGGGKSLCYQLPALVLEGTAIVVSPLIA 71
Query: 65 LMQDQVMSLK----QRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPIS 117
LM++QV +++ + G+ A L S+ T + V+ ++G +LL++ PE +
Sbjct: 72 LMKNQVDAIRSLSSEHGV-AHVLNSSLTKTEIAQVKEDIKSGITKLLYVAPE--SLTKEE 128
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
+ S L + A+DEAHCISEWGHDFR EY+ L + L +P + LTATAT KV+
Sbjct: 129 YVSFLQGEKLSFVAIDEAHCISEWGHDFRPEYRNLRNIIRSLGDIPIIGLTATATPKVQE 188
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI+ +L++ N ASF+R NLFY ++ + V+ + +K G +I YC++
Sbjct: 189 DILKNLEIPNANTFKASFNRPNLFYEIRPKTKN---VETDIIRFIKQHQGKSGVI-YCLS 244
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K VEEI+ L+ G+ A YH + +K R + +F+ +++ V+VAT+AFGMGIDKPDV
Sbjct: 245 RKKVEEIANVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGMGIDKPDV 304
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD-FYCGESQTENQ-RTA 355
R+VIH+ PK+LESYYQE+GR GRDG C YY+ + K + F G+ E + A
Sbjct: 305 RYVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDIEKLEKFMAGKPVAEQEIGYA 364
Query: 356 IMESLLAAQRYCLLTTCRR 374
+++ ++A Y + RR
Sbjct: 365 LLQEVVA---YAETSMSRR 380
>gi|54310561|ref|YP_131581.1| ATP-dependent DNA helicase RecQ [Photobacterium profundum SS9]
gi|46915004|emb|CAG21779.1| putative ATP-dependent DNA helicase RecQ [Photobacterium profundum
SS9]
Length = 615
Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 149/373 (39%), Positives = 216/373 (57%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FR Q++VI+ ++E +DCLV+M TG GKSLCYQ+P L+ LV+SPLIS
Sbjct: 21 LQDVFGYQSFRIGQQEVIEAVVEGQDCLVIMPTGGGKSLCYQIPALIMPGITLVISPLIS 80
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L G+ A ++ S + V G +L++++PE+ ++ F +
Sbjct: 81 LMKDQVDQLNANGVAAAYINSTMSREEVMETFLAMREGDLKLVYVSPER--VLMRDFIER 138
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + + AVDEAHC+S+WGHDFR EY L L+ +P +ALTATA + R DI +
Sbjct: 139 LYETPLSMVAVDEAHCVSQWGHDFRPEYAALGTLKQHFENLPIMALTATADDTTRNDITS 198
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L NP+ + SFDR N+ Y ++ + + + L V G I VYC + K V
Sbjct: 199 RLGLTNPHDYLGSFDRPNIRY--TLLEKHKPMTQ--LTRYLTGVRGQCGI-VYCNSRKRV 253
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+I+ L+ GV+A YH + R F RD+I ++VAT+AFGMGI+KP+VR V+
Sbjct: 254 EQIAGKLRDSGVRAAAYHAGLDHDERGRVQESFQRDDIHIVVATVAFGMGINKPNVRFVV 313
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
HY P+ +ESYYQE+GR GRDG+ + ++Y S+ A E + Q+ L
Sbjct: 314 HYDIPRNIESYYQETGRAGRDGLPAEAVMFYDPSDLAWLRRCLDEKEEGAQKQVESHKLN 373
Query: 362 AAQRYCLLTTCRR 374
A + TCRR
Sbjct: 374 AMGAFAEAQTCRR 386
>gi|300702774|ref|YP_003744375.1| ATP-dependent DNA helicase [Ralstonia solanacearum CFBP2957]
gi|299070436|emb|CBJ41731.1| ATP-dependent DNA helicase [Ralstonia solanacearum CFBP2957]
Length = 637
Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 154/383 (40%), Positives = 221/383 (57%), Gaps = 16/383 (4%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGK----TALV 58
+ L FGYS FR Q D++ + + DCLV+M TG GKSLCYQ+P LV + +V
Sbjct: 24 AVLHDVFGYSAFRGPQADIVTHVADGGDCLVLMPTGGGKSLCYQIPALVRHRRGQGAGIV 83
Query: 59 VSPLISLMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIP 115
VSPLI+LMQDQV +L++ G+ A +L SA T + V+ G L+++ PE+ ++
Sbjct: 84 VSPLIALMQDQVAALEEAGVRAAYLNSALTGAEAARVERDLAAGRLDLVYVAPER--LMT 141
Query: 116 ISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
F L ++ + LFA+DEAHC+S+WGHDFR EY QL L VP +ALTATA
Sbjct: 142 PRFLELLERSRIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPHVPRIALTATADAVT 201
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYC 235
R +I+ L L V ++SFDR N+ Y + + + + ++ G + IVYC
Sbjct: 202 RDEIVERLALGGERVFLSSFDRPNIRYTIVEKDSARQQLLRFIRAEHLGEDGCDAGIVYC 261
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
++ K VEE ++ L + G++A YH M + R +F ++E VMVAT+AFGMGIDKP
Sbjct: 262 LSRKKVEETAQWLAEQGIRALPYHAGMDVETRARHQAIFRKEEGVVMVATIAFGMGIDKP 321
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQR-- 353
DVR V H PK+LE YYQE+GR GRDG+ + W+ Y ++ + ES ++
Sbjct: 322 DVRFVAHLDLPKSLEGYYQETGRAGRDGLPANAWMAYGLADVVQQRRMIDESDADDVHKR 381
Query: 354 --TAIMESLLAAQRYCLLTTCRR 374
TA +++LL C CRR
Sbjct: 382 VSTAKLDALLG---LCESAGCRR 401
>gi|357406115|ref|YP_004918039.1| ATP-dependent DNA helicase RecQ [Methylomicrobium alcaliphilum 20Z]
gi|351718780|emb|CCE24454.1| ATP-dependent DNA helicase RecQ [Methylomicrobium alcaliphilum 20Z]
Length = 711
Score = 281 bits (718), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 145/335 (43%), Positives = 207/335 (61%), Gaps = 9/335 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L FGY FR Q+DVI ++ RD LV+M TG GKSLCYQ+P L+ +V+SP
Sbjct: 6 LDVLNTVFGYDRFRGQQQDVIDELLAGRDALVLMPTGGGKSLCYQIPSLLRPGVGIVISP 65
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISF 118
LI+LMQDQV +L Q G+NA FL S T S++ + LL++ PE+ +
Sbjct: 66 LIALMQDQVSALHQLGVNAAFLNSTLTGEEARSIENRLRDDQLDLLYIAPER--LNSART 123
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
S L + LFA+DEAHC+S+WGHDFR +Y QL L +P +ALTATA E+ R +
Sbjct: 124 LSLLDNLNIALFAIDEAHCVSQWGHDFRADYLQLSMLHERYPSIPRIALTATADERTRQE 183
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
II+ L L + ++SFDR N+ Y +++ + Q+ +L+Q I G I VYC++
Sbjct: 184 IISRLALDQAKLFVSSFDRPNIRY--RIVQK-QNARQQLLQFIQSEHFGDAGI-VYCLSR 239
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K VE ++ L+ G++A YH M + AR++ F+ +E V+VAT+AFGMGIDKP+VR
Sbjct: 240 KKVESTAEWLQSKGIRALPYHAGMDNAARQQHQHRFLMEEGLVIVATIAFGMGIDKPNVR 299
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYA 333
V H PK++E+YYQE+GR GRDG+ + W+ Y
Sbjct: 300 FVAHLDLPKSIEAYYQETGRAGRDGLPADAWMAYG 334
>gi|407072033|ref|ZP_11102871.1| ATP-dependent DNA helicase RecQ [Vibrio cyclitrophicus ZF14]
Length = 612
Score = 281 bits (718), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 148/375 (39%), Positives = 223/375 (59%), Gaps = 10/375 (2%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ L+ FGY FR Q++VI +E +D LV+M TG GKSLCYQ+P LV LV+SPL
Sbjct: 19 NILQDVFGYQSFRDGQQEVIDLAVEGKDSLVIMPTGGGKSLCYQIPALVREGLTLVISPL 78
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFW 119
ISLM+DQV LK G+ AE + S+ SV + +G ++++++PE+ ++ F
Sbjct: 79 ISLMKDQVDQLKANGVAAECINSSMPREKLISVFNRMNSGQLKMVYVSPER--VLMRDFI 136
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L + + AVDEAHCIS+WGHDFR EY L +L+ + VP++ALTATA + R DI
Sbjct: 137 ERLQGLPLSMIAVDEAHCISQWGHDFRPEYASLGQLKQYFPHVPYMALTATADDATRKDI 196
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
I+ L+L P+ + SFDR N+ Y + ++ V ++V+ + G I+YC + K
Sbjct: 197 ISRLQLVEPHTYLGSFDRPNIRYNLVEKHKP---VSQVVRYLETQKGNCG--IIYCGSRK 251
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
VE +++ L G++A YH M + R F RD+I+++VAT+AFGMGI+KP+VR
Sbjct: 252 KVEMVTEKLCNNGLRAAGYHAGMDTDERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRF 311
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
V+H+ P+ +ESYYQE+GR GRDG+ + + + ++ E + Q+ M
Sbjct: 312 VVHFDIPRNIESYYQETGRAGRDGLPAEAMMLFDPADMGWLRRMLDEKEEGPQKQVEMHK 371
Query: 360 LLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 372 LNAMSAFAEAQTCRR 386
>gi|352106026|ref|ZP_08961137.1| ATP-dependent DNA helicase RecQ [Halomonas sp. HAL1]
gi|350598118|gb|EHA14242.1| ATP-dependent DNA helicase RecQ [Halomonas sp. HAL1]
Length = 608
Score = 281 bits (718), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 148/377 (39%), Positives = 219/377 (58%), Gaps = 9/377 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L++ FGY FR Q+ +I+ +I D LV+M TG GKSLCYQ+P L+ TA+VVSP
Sbjct: 10 LKVLQEVFGYDSFRGPQQAIIEHVIAGGDALVLMPTGGGKSLCYQIPALLREGTAIVVSP 69
Query: 62 LISLMQDQVMSLKQRGINAEFLGSA---QTDSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LI+LMQDQV +L+Q G+ A +L S+ ++ + G LL++ PE+ +
Sbjct: 70 LIALMQDQVAALEQNGVRAAYLNSSLDYHEAVEIENRLRAGELDLLYVAPERLATPRMQM 129
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
L + + LFA+DEAHC+S+WGHDFR EY+QL L VP +ALTATA R D
Sbjct: 130 L--LEQNQIALFAIDEAHCVSQWGHDFRPEYRQLSHLHQRFPQVPRIALTATADVPTRHD 187
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L+L+ + + FDR N+ Y I Q E + ++ + IVYC++
Sbjct: 188 IMEHLQLQEAALYNSGFDRPNIRYH---IAENQGNAKEQLLRFIREHHDGEAGIVYCLSR 244
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
+ VEE + L++ G+ A YH + ++ R++ F+R++ V+VAT+AFGMGIDKPDVR
Sbjct: 245 RKVEETAAWLERQGLTALPYHAGLPAEQRQQHQTRFLREDGVVVVATIAFGMGIDKPDVR 304
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN-FAKGDFYCGESQTENQRTAIM 357
V H PK++E+YYQE+GR GRDG+ + W+ Y + G S + Q+
Sbjct: 305 FVAHLNLPKSIEAYYQETGRAGRDGLPADAWMAYGLQDVITLRQMQQGSSAADQQKRIEQ 364
Query: 358 ESLLAAQRYCLLTTCRR 374
+ L A C + +CRR
Sbjct: 365 QKLDAMLGLCEIISCRR 381
>gi|154248226|ref|YP_001419184.1| ATP-dependent DNA helicase RecQ [Xanthobacter autotrophicus Py2]
gi|154162311|gb|ABS69527.1| ATP-dependent DNA helicase RecQ [Xanthobacter autotrophicus Py2]
Length = 607
Score = 281 bits (718), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 161/381 (42%), Positives = 221/381 (58%), Gaps = 25/381 (6%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FR +QK++++ + D LV+M TG GKSLCYQ+P LV TA+VVSPLI+
Sbjct: 16 LRHVFGYEAFRGHQKEIVEHVAAGGDALVLMPTGGGKSLCYQVPALVRPGTAIVVSPLIA 75
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM DQV +L+Q G+ A L S+ V+ G LL++ PE+ ++ SF +
Sbjct: 76 LMHDQVQALRQLGVKAAMLNSSLAPGEARQVERALAMGDLDLLYVAPER--LLTDSFLTL 133
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L A + LFA+DEAHC+S+WGHDFR EY+QL L GVP +ALTATA R +I+
Sbjct: 134 LDGARISLFAIDEAHCVSQWGHDFRPEYRQLTILHERFPGVPRLALTATADGPTRREIME 193
Query: 182 SLKLKNPYVTIASFDRKNLFYGV--KVINRGQ--SFVDELVQEILKSVAGAGSIIVYCMT 237
L L+ V ++SFDR N+ Y + K R Q +F+D E AG IVYCM+
Sbjct: 194 RLALEEGRVFLSSFDRPNIRYRIEPKANPRAQLRAFLDAHADE-------AG--IVYCMS 244
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
VE ++ L G A YH + + R F+++E VMVAT+AFGMGIDKPDV
Sbjct: 245 RAKVEATAEILSTEGRTALPYHAGLDADTRARHQDRFLKEEGVVMVATVAFGMGIDKPDV 304
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI- 356
R V+H PK++E+YYQE+GR GRDG+ S L Y + AK + S + R +
Sbjct: 305 RFVVHLDLPKSIEAYYQETGRAGRDGLPSEALLLYGVEDVAKLIQFVESSDSPEARKRVE 364
Query: 357 ---MESLLAAQRYCLLTTCRR 374
+++LL C +CRR
Sbjct: 365 RGKLDALLG---LCETASCRR 382
>gi|328948910|ref|YP_004366247.1| RecQ familyATP-dependent DNA helicase [Treponema succinifaciens DSM
2489]
gi|328449234|gb|AEB14950.1| ATP-dependent DNA helicase, RecQ family [Treponema succinifaciens
DSM 2489]
Length = 520
Score = 281 bits (718), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 155/376 (41%), Positives = 230/376 (61%), Gaps = 17/376 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK FGY FRP Q+ +IQ +++ RD L VM TG GKSLCY++P L+ +VVSPLI+
Sbjct: 14 LKSVFGYESFRPMQRKIIQNVLDGRDTLAVMPTGGGKSLCYEIPALILPGITVVVSPLIA 73
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACIIPISFWSK 121
LMQDQV L+ GI+A L S+ + Q E +G +LL+++PE + +
Sbjct: 74 LMQDQVAQLESYGISAVCLNSSLERNHYQKCCEKILSGKIKLLYVSPEGLNSGRMIRLLQ 133
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
K+ V A+DEAHCISEWGHDFR +Y ++ +R F+ALTATAT++V+ DII
Sbjct: 134 ESKSSVDCIAIDEAHCISEWGHDFRPDYMEITHIRNQFPKSVFLALTATATKQVQADIIK 193
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG--AGSIIVYCMTIK 239
+L+++NP + +ASF+R N+F ++VI + D+ ++++L + S I+YC + K
Sbjct: 194 NLRMENPEIFMASFNRPNIF--LQVIKK-----DKPIEQVLNFIENHPNQSGIIYCFSRK 246
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V+ +++ L +KA +YH + R + + FI D+ +MVAT+AFGMGI+KPDVR
Sbjct: 247 QVDLVAQELHINRIKALSYHAGLNDAQRTKNQQDFISDKADIMVATVAFGMGINKPDVRF 306
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIH+ PK++E YYQE GR GRDG+ S L Y+ + K ++ +N +A E+
Sbjct: 307 VIHFDMPKSIEQYYQEIGRAGRDGLESEALLLYSAGDIHKIRYFF----KDNFDSAKSEN 362
Query: 360 LLAAQ-RYCLLTTCRR 374
LL YC + CRR
Sbjct: 363 LLQGMINYCENSVCRR 378
>gi|409195579|ref|ZP_11224242.1| putative ATP-dependent DNA helicase [Marinilabilia salmonicolor JCM
21150]
Length = 726
Score = 281 bits (718), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 160/383 (41%), Positives = 233/383 (60%), Gaps = 20/383 (5%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ S LK++FG+ F+ Q+ +IQ +++ D V+M TG GKSLCYQLP L+ TA+++S
Sbjct: 7 LSSYLKRHFGFDTFKGNQEAIIQNVLDGNDTFVLMPTGGGKSLCYQLPALILDGTAIIIS 66
Query: 61 PLISLMQDQVMSLKQ----RGINAEFLGSAQTDSSVQTKAE---TGYFQLLFMTPEKACI 113
PLI+LM++QV +++ GI A FL S+ T S++Q + +G +LL++ PE +
Sbjct: 67 PLIALMKNQVDAMRNFSEDDGI-AHFLNSSLTKSAIQQVKDDVISGKTRLLYVAPE--SL 123
Query: 114 IPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATE 173
L + + +AVDEAHCISEWGHDFR EY+++ + + + P +ALTATAT
Sbjct: 124 TKEDNIQFLKQVKISFYAVDEAHCISEWGHDFRPEYRRIRPIISEIGDAPVIALTATATP 183
Query: 174 KVRIDIINSLKLKNPYVTIASFDRKNLFYGVKV-INRGQSFVDELVQEILKSVAGAGSII 232
KV+ DI +L + N +V +SF+R NLFY V+ +N + + +ILK G S I
Sbjct: 184 KVQHDIQKNLGMLNAHVYKSSFNRANLFYEVRPKVNATREII-----KILKENTGK-SAI 237
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
+YC++ K VEE+++ L G+KA YH M + R F+ +EI V+VAT+AFGMGI
Sbjct: 238 IYCLSRKKVEELAETLVVNGIKALPYHAGMDAATRSGNQDKFLMEEIDVIVATIAFGMGI 297
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD-FYCGESQTEN 351
DKPDVR VIHY PK+LE YYQE+GR GRDG C +Y+ + K + F G+ E
Sbjct: 298 DKPDVRIVIHYDIPKSLEGYYQETGRAGRDGGEGRCIAFYSYKDIQKLEKFMQGKPLAEQ 357
Query: 352 QRTAIMESLLAAQRYCLLTTCRR 374
+ + LL Y + CRR
Sbjct: 358 EIGKQL--LLETVAYAESSVCRR 378
>gi|390953896|ref|YP_006417654.1| ATP-dependent DNA helicase RecQ [Aequorivita sublithincola DSM
14238]
gi|390419882|gb|AFL80639.1| ATP-dependent DNA helicase RecQ [Aequorivita sublithincola DSM
14238]
Length = 692
Score = 281 bits (718), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 154/378 (40%), Positives = 223/378 (58%), Gaps = 17/378 (4%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ LK +FGY F P Q+++I I++++D + +M TG GKSLC+QLP L TA+V+S
Sbjct: 9 IADLLKTHFGYDKFLPNQEEIINNILDQKDTIAIMPTGGGKSLCFQLPALALDGTAIVIS 68
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPIS 117
PLI+LM+DQV +LK GI+A F S+Q V + + G +LL++ PE + ++
Sbjct: 69 PLIALMKDQVDALKANGISATFFNSSQPYEEQQQVLKELQNGNLKLLYVAPE--SLPQLN 126
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
F +K + LFA+DEAHCIS WGHDFR Y QL L+ VP +ALTATA R
Sbjct: 127 FILNSIK--INLFAIDEAHCISSWGHDFRPAYTQLKSLKEQFPTVPLIALTATADRATRE 184
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKV-INRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DI L + N IASFDR NL+ V+ NR + +D L +I + G I+YC+
Sbjct: 185 DIAAQLSIPNAKTFIASFDRPNLYLDVRPGQNRNKQILDFL--KIHRDECG----IIYCL 238
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K E+++ L G KA YH + S+ R + FI D ++VAT+AFGMGIDK +
Sbjct: 239 SRKSTEKLAATLSSKGYKAEAYHAGLTSEERTQIQENFINDVSPIIVATIAFGMGIDKSN 298
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
VR VIHY PK ++ YYQE GR GRDG+ + L+Y+ ++ + ++TE + A
Sbjct: 299 VRWVIHYNMPKNIDGYYQEIGRSGRDGLPAHTILFYSFADVIMLRKFAEGTETEAYQLAK 358
Query: 357 MESLLAAQRYCLLTTCRR 374
+E + Q++ +CRR
Sbjct: 359 LERM---QQFAEALSCRR 373
>gi|269964536|ref|ZP_06178775.1| ATP-dependent DNA helicase RecQ [Vibrio alginolyticus 40B]
gi|269830663|gb|EEZ84883.1| ATP-dependent DNA helicase RecQ [Vibrio alginolyticus 40B]
Length = 640
Score = 281 bits (718), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 151/373 (40%), Positives = 218/373 (58%), Gaps = 10/373 (2%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FGY FR Q+ VI +E RD LV++ TG GKSLCYQ+P LV LV+SPLIS
Sbjct: 49 LEDVFGYQEFRDGQQLVIDAAVEGRDSLVILPTGGGKSLCYQIPALVRSGITLVISPLIS 108
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV LK G+ AE + S SV + TG+ +L++++PE+ ++ F +
Sbjct: 109 LMKDQVDQLKANGVAAECINSTMPREELLSVYNRMHTGHLKLVYVSPER--VLMRDFIER 166
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +L+ VPF+ALTATA + R DI+
Sbjct: 167 LENLPLSMIAVDEAHCISQWGHDFRPEYAALGQLKQQFSHVPFMALTATADDATRRDILE 226
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L+L NP V + SFDR N+ Y + ++ V ++V+ + G I+YC + K V
Sbjct: 227 RLQLNNPEVYLGSFDRPNIRYNLVEKHKP---VSQIVRYLETQKGNCG--IIYCGSRKKV 281
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E +++ L ++A YH M + R F RD+I+++VAT+AFGMGI+KP+VR V+
Sbjct: 282 EMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRFVV 341
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + + Y ++ + E Q+ L
Sbjct: 342 HFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGPQKQVETHKLN 401
Query: 362 AAQRYCLLTTCRR 374
A + TCRR
Sbjct: 402 AMSAFAEAQTCRR 414
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.324 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,385,173,629
Number of Sequences: 23463169
Number of extensions: 211711222
Number of successful extensions: 791207
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 29774
Number of HSP's successfully gapped in prelim test: 9840
Number of HSP's that attempted gapping in prelim test: 716319
Number of HSP's gapped (non-prelim): 59223
length of query: 374
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 230
effective length of database: 8,980,499,031
effective search space: 2065514777130
effective search space used: 2065514777130
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 77 (34.3 bits)