BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037567
(374 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O93530|WRN_XENLA Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis
GN=wrn PE=2 SV=1
Length = 1436
Score = 336 bits (862), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 179/380 (47%), Positives = 240/380 (63%), Gaps = 11/380 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRII-EKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+S LK YFG+S F+P Q V+ ++ E+RD LVVMATG GKSLCYQ P+ T +V+
Sbjct: 478 ISCLKTYFGHSSFKPVQWKVVHSVLRERRDNLVVMATGYGKSLCYQFAPVYTSGIGIVIC 537
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ L+ I++ FLGSAQ+ + +Q + G ++++MTPE C IS
Sbjct: 538 PLISLMEDQVLQLEMSNISSCFLGSAQSKNVLQD-VKDGKMRVIYMTPE-FCSRGISLLQ 595
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
L + G+ L A+DEAHCISEWGHDFR Y+ L L+ L VP VALTATA+ +R DI
Sbjct: 596 DLDNRYGITLIAIDEAHCISEWGHDFRSAYRSLGSLKRMLPNVPIVALTATASPSIREDI 655
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAG-----SIIVY 234
SL L NP VT SFDR NL+ + V + + +L Q ++K G+G + IVY
Sbjct: 656 TKSLNLHNPQVTCTSFDRPNLY--LDVARKTTNISIDLRQFLIKKQQGSGWEFEGATIVY 713
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C T K E+++ L +LG+ GTYH MG K R E H F+RDEI +VAT+AFGMGI+K
Sbjct: 714 CPTRKTSEQVTAELIKLGIACGTYHAGMGIKQRREVHHRFMRDEIHCVVATVAFGMGINK 773
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
PD+R VIHYG PK +ESYYQE GR GRDG+ S C +A+++ GE + R
Sbjct: 774 PDIRKVIHYGAPKEMESYYQEIGRAGRDGLPSCCHALWAQADMNFNRHMLGEIPNKGFRE 833
Query: 355 AIMESLLAAQRYCLLTTCRR 374
++ L ++Y +TCRR
Sbjct: 834 YKLKMLTKMEKYLNSSTCRR 853
>sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1
SV=2
Length = 1432
Score = 319 bits (818), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 166/378 (43%), Positives = 241/378 (63%), Gaps = 9/378 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
V+ LK YFG+S F+P Q VI ++E +RD + VMATG GKSLC+Q PP+ GK LV+S
Sbjct: 537 VTCLKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVIS 596
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ LK I A FLGSAQ+++ V T + G ++++++TPE C +
Sbjct: 597 PLISLMEDQVLQLKMSNIPACFLGSAQSEN-VLTDIKLGKYRIVYVTPE-YCSGNMGLLQ 654
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L G+ L AVDEAHCISEWGHDFR +++L L+T L VP VALTATA+ +R DI
Sbjct: 655 QLEADIGITLIAVDEAHCISEWGHDFRDSFRKLGSLKTALPMVPIVALTATASSSIREDI 714
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG---AGSIIVYCM 236
+ L L+NP +T FDR NL+ V+ + + + +L ++K+ + G I+YC
Sbjct: 715 VRCLNLRNPQITCTGFDRPNLYLEVR--RKTGNILQDLQPFLVKTSSHWEFEGPTIIYCP 772
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K ++++ L++L + GTYH M R++ H F+RDEI+ ++AT+AFGMGI+K D
Sbjct: 773 SRKMTQQVTGELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQCVIATIAFGMGINKAD 832
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
+R VIHYG PK +ESYYQE GR GRDG+ S C + +A ++ E + E R
Sbjct: 833 IRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEIRNEKFRLYK 892
Query: 357 MESLLAAQRYCLLTTCRR 374
++ + ++Y + CRR
Sbjct: 893 LKMMAKMEKYLHSSRCRR 910
>sp|O09053|WRN_MOUSE Werner syndrome ATP-dependent helicase homolog OS=Mus musculus
GN=Wrn PE=1 SV=3
Length = 1401
Score = 313 bits (802), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 166/377 (44%), Positives = 237/377 (62%), Gaps = 6/377 (1%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ LK YFG+S F+P Q VI ++E +RD +VVMATG GKSLC+Q PP+ TGK +V+S
Sbjct: 501 INCLKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVIS 560
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ L+ + A LGSAQ+ ++ + G ++++++TPE C +
Sbjct: 561 PLISLMEDQVLQLELSNVPACLLGSAQS-KNILGDVKLGKYRVIYITPE-FCSGNLDLLQ 618
Query: 121 KLLKA-GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L + G+ L AVDEAHCISEWGHDFR ++ L L+T L VP +AL+ATA+ +R DI
Sbjct: 619 QLDSSIGITLIAVDEAHCISEWGHDFRSSFRMLGSLKTALPLVPVIALSATASSSIREDI 678
Query: 180 INSLKLKNPYVTIASFDRKNLFY--GVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
I+ L LK+P +T FDR NL+ G K N Q LV++ + G I+YC +
Sbjct: 679 ISCLNLKDPQITCTGFDRPNLYLEVGRKTGNILQDLKPFLVRKASSAWEFEGPTIIYCPS 738
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K E+++ L +L + TYH M R++ H F+RDEI+ +VAT+AFGMGI+K D+
Sbjct: 739 RKMTEQVTAELGKLNLACRTYHAGMKISERKDVHHRFLRDEIQCVVATVAFGMGINKADI 798
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHYG PK +ESYYQE GR GRDG+ S C L +A ++F E E R +
Sbjct: 799 RKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNTSRNLLIEIHDEKFRLYKL 858
Query: 358 ESLLAAQRYCLLTTCRR 374
+ ++ ++Y + CRR
Sbjct: 859 KMMVKMEKYLHSSQCRR 875
>sp|Q19546|WRN_CAEEL Probable Werner syndrome ATP-dependent helicase homolog 1
OS=Caenorhabditis elegans GN=wrn-1 PE=3 SV=2
Length = 1056
Score = 295 bits (756), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 159/387 (41%), Positives = 239/387 (61%), Gaps = 23/387 (5%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
++ L ++FG+ FR Q DV++ ++ +D V+M+TG GKS+CYQLP L+ +VVSP
Sbjct: 216 LNALNEFFGHKGFREKQWDVVRNVLGGKDQFVLMSTGYGKSVCYQLPSLLLNSMTVVVSP 275
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGY-FQLLFMTPEKACIIPISFWS 120
LISLM DQV +L +GI+A L T A + + ++M+PE ++
Sbjct: 276 LISLMNDQVTTLVSKGIDAVKLDGHSTQIEWDQVANNMHRIRFIYMSPE---MVTSQKGL 332
Query: 121 KLL---KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR--TFLLGVPFVALTATATEKV 175
+LL + + L A+DEAHC+S+WGHDFR Y+ L ++R + L +P +ALTATAT +V
Sbjct: 333 ELLTSCRKHISLLAIDEAHCVSQWGHDFRNSYRHLAEIRNRSDLCNIPMIALTATATVRV 392
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDEL----VQEILKSVAGAGSI 231
R D+I +L+L+ P +T SFDRKNL+ V + + ++L + +K G
Sbjct: 393 RDDVIANLRLRKPLITTTSFDRKNLYISV---HSSKDMAEDLGLFMKTDEVKGRHFGGPT 449
Query: 232 IVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMG 291
I+YC T + V++++ L+++GV++ YH + RE+AH F+RD+I +VAT+AFGMG
Sbjct: 450 IIYCQTKQMVDDVNCVLRRIGVRSAHYHAGLTKNQREKAHTDFMRDKITTIVATVAFGMG 509
Query: 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTEN 351
IDKPDVR+VIHYGCP +ESYYQE GR GRDG S+C +++A + F SQ
Sbjct: 510 IDKPDVRNVIHYGCPNNIESYYQEIGRAGRDGSPSICRVFWAPKDLNTIKFKLRNSQ--- 566
Query: 352 QRTAIMESL--LAAQRYCLLTT--CRR 374
Q+ ++E+L + Q +LTT CRR
Sbjct: 567 QKEEVVENLTMMLRQLELVLTTVGCRR 593
>sp|P71359|RECQ_HAEIN ATP-dependent DNA helicase RecQ OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=recQ PE=3 SV=1
Length = 619
Score = 291 bits (745), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 161/376 (42%), Positives = 224/376 (59%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+S LK FGY FR Q++VI + +D LVVMATG+GKSLCYQ+P L LV+SP
Sbjct: 17 LSVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISP 76
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L+ GI A+FL S+QT VQ K +G +LL+++PEK ++ SF
Sbjct: 77 LISLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEK--VMTNSF 134
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + + VC A+DEAHCIS+WGHDFR EY QL L+ P +ALTATA + D
Sbjct: 135 FQLISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATADYATQQD 194
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L LKN + I SFDR N+ Y + +++L + +L +G I+YC +
Sbjct: 195 ILRHLNLKNLHKYIGSFDRPNIRY---TLEEKYKPMEQLTRFVLAQKGKSG--IIYCNSR 249
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I+++L+ GV A YH M + RE + F RD ++V+VAT+AFGMGI+K +VR
Sbjct: 250 NKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFGMGINKSNVR 309
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V H+ P+++ESYYQE+GR GRD + + L+Y +++A E QR
Sbjct: 310 FVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLEKPETPQRQIEQH 369
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 370 KLEAIGEFAESQTCRR 385
>sp|P15043|RECQ_ECOLI ATP-dependent DNA helicase RecQ OS=Escherichia coli (strain K12)
GN=recQ PE=1 SV=5
Length = 609
Score = 290 bits (743), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ ++ +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER--LMLDNFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>sp|Q9CL21|RECQ_PASMU ATP-dependent DNA helicase RecQ OS=Pasteurella multocida (strain
Pm70) GN=recQ PE=3 SV=1
Length = 632
Score = 290 bits (742), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 157/376 (41%), Positives = 227/376 (60%), Gaps = 10/376 (2%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L FGY FR Q++VI + +D LV+MATG+GKSLCYQ+P L LV+SP
Sbjct: 27 LDVLHAVFGYQSFRKGQEEVIDATLMGKDSLVIMATGNGKSLCYQIPALCFEGLTLVISP 86
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV L GI A++L S+QT VQ K +G +LL+++PEK ++ SF
Sbjct: 87 LISLMKDQVDQLLANGIEADYLNSSQTFTEQQQVQNKLMSGTLKLLYVSPEK--VMTTSF 144
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ + V A+DEAHCIS+WGHDFR EY QL L++ P +ALTATA R D
Sbjct: 145 FHLISHCKVSFVAIDEAHCISQWGHDFRPEYTQLGGLKSCFPHAPIMALTATADHATRQD 204
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L L++P+V I SFDR N+ Y ++ + + +++L + +L +G I+YC +
Sbjct: 205 ILRHLNLQSPHVYIGSFDRPNIRY--TLVEKFKP-MEQLCRFVLGQKGKSG--IIYCNSR 259
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VE I+++L+ GV A YH + + RE+ R F RD ++V+VAT+AFGMGI+K +VR
Sbjct: 260 SKVERIAESLRNKGVSAQAYHAGLETSQREQVQRAFQRDNVQVVVATIAFGMGINKSNVR 319
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+H+ P+++ESYYQE+GR GRD + + L+Y +++A E QR
Sbjct: 320 FVVHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLHKILLEKPESPQRQIEAL 379
Query: 359 SLLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 380 KLQAIGEFAESQTCRR 395
>sp|Q9FT73|MED34_ARATH Mediator of RNA polymerase II transcription subunit 34
OS=Arabidopsis thaliana GN=MED34 PE=1 SV=1
Length = 705
Score = 289 bits (739), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 166/380 (43%), Positives = 234/380 (61%), Gaps = 24/380 (6%)
Query: 9 FGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQD 68
FG S +R QK++I I+ RD LV+MA G GKSLCYQLP ++ G T LVVSPL+SL+QD
Sbjct: 85 FGISKYRANQKEIINAIMTGRDVLVIMAAGGGKSLCYQLPAMLRGGTTLVVSPLLSLIQD 144
Query: 69 QVMSLKQRGINAEFLGSA---QTDSSVQTKAETGY--FQLLFMTPEKACIIPISFWSKLL 123
QVM L GI+A L S + + V E G ++L++TPEK F SKL
Sbjct: 145 QVMGLAALGISAYMLTSTSGKENEKFVYKALEKGEDDLKILYVTPEKVSKSK-RFMSKLE 203
Query: 124 K---AG-VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
K AG + L ++DEAHC S+WGHDFR +YK L L+T VP VALTATAT+KV+ D+
Sbjct: 204 KCHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSILKTQFPKVPMVALTATATQKVQNDL 263
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINR-GQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I L + ++S +R NLFY V+ + G+ VDE+ + I +S + S IVYC +
Sbjct: 264 IEMLHIPKCVKFVSSVNRPNLFYSVREKSAVGKLVVDEIAEFIRESYSNNESGIVYCFSR 323
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K+ E+I+ L++ G+ A YH M + RE+ H + +++++V+V T+AFGMGI+KPDVR
Sbjct: 324 KECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 383
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD---FYCGESQTENQRTA 355
VIH+ K++E+YYQESGR GRDG+ S C L++ ++ + FY +
Sbjct: 384 FVIHHSLSKSMETYYQESGRAGRDGLPSECILFFRSADVPRQSSMVFY---------EYS 434
Query: 356 IMESLLAAQRYCL-LTTCRR 374
+++L RYC T CRR
Sbjct: 435 GLQNLYDIVRYCQSKTKCRR 454
>sp|Q9FT72|RQL3_ARATH ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana
GN=RECQL3 PE=1 SV=1
Length = 713
Score = 283 bits (723), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 158/390 (40%), Positives = 230/390 (58%), Gaps = 25/390 (6%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+V L+ +FG++ FR Q + IQ ++ RDC +M TG GKS+CYQ+P L LVVS
Sbjct: 24 LVKLLRWHFGHADFRGKQLEAIQAVVSGRDCFCLMPTGGGKSICYQIPALAKPGIVLVVS 83
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQT---DSSVQTKAETG--YFQLLFMTPEKACIIP 115
PLI+LM++QVM+LK++GI AE+L S Q + + ++G +LL++TPE I
Sbjct: 84 PLIALMENQVMALKEKGIAAEYLSSTQATHVKNKIHEDLDSGKPSVRLLYVTPE--LIAT 141
Query: 116 ISFWSKLLKAG----VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATA 171
F KL K + L A+DEAHCIS WGHDFR Y+QL LR L VP +ALTATA
Sbjct: 142 KGFMLKLRKLHSRGLLNLIAIDEAHCISSWGHDFRPSYRQLSTLRDSLADVPVLALTATA 201
Query: 172 TEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSI 231
KV+ D+I+SL L+NP V +SF+R N+FY V R + +D ++ + G+I
Sbjct: 202 APKVQKDVIDSLNLRNPLVLKSSFNRPNIFYEV----RYKDLLDNAYTDLGNLLKSCGNI 257
Query: 232 --IVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFG 289
I+YC+ +++S L +G+ + YH + SK R ++ + +++VAT+AFG
Sbjct: 258 CAIIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFG 317
Query: 290 MGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQT 349
MGIDK DVR V H+ PK++ES+YQESGR GRD + S LYY + K ++ S+
Sbjct: 318 MGIDKKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSRSVLYYGVDDRKKMEYLLRNSEN 377
Query: 350 ENQR-----TAIMESLLAAQRYCLLTTCRR 374
+ T+ E ++ YC + CRR
Sbjct: 378 KKSSSSKKPTSDFEQIVT---YCEGSGCRR 404
>sp|P40724|RECQ_SALTY ATP-dependent DNA helicase RecQ OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=recQ PE=3 SV=3
Length = 609
Score = 281 bits (719), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 220/375 (58%), Gaps = 12/375 (3%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
L++ FGY FRP Q+ +I + RDCLVVM TG GKSLCYQ+P L+ +VVSPLI
Sbjct: 16 VLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLI 75
Query: 64 SLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWS 120
SLM+DQV L G+ A L S Q+ V TG +LL++ PE+ ++ +F
Sbjct: 76 SLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQIRLLYIAPER--LMLDNFLD 133
Query: 121 KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DII
Sbjct: 134 HLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTTRQDII 193
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L L +P + I+SFDR N+ Y ++ +D+L++ + + +G I+YC +
Sbjct: 194 RLLGLNDPLIQISSFDRPNIRY---MLMEKFKPLDQLMRYVQEQRGKSG--IIYCNSRAK 248
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
VE+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V
Sbjct: 249 VEDTAARLQSRGISAAAYHAGLENAIRVDVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 308
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + Q I
Sbjct: 309 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPAGQLQDIERHK 367
Query: 361 LAAQ-RYCLLTTCRR 374
L A + TCRR
Sbjct: 368 LNAMGAFAEAQTCRR 382
>sp|Q9TXJ8|RECQ1_CAEEL Putative ATP-dependent DNA helicase Q1 OS=Caenorhabditis elegans
GN=K02F3.12 PE=3 SV=3
Length = 631
Score = 278 bits (711), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 165/384 (42%), Positives = 230/384 (59%), Gaps = 25/384 (6%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK+ F FRP Q+ I ++ K D +V+++TG GKSLCYQLP L+ ALVVSPLIS
Sbjct: 101 LKEQFHLEKFRPLQRAAINAVMSKEDAVVILSTGGGKSLCYQLPALLANGLALVVSPLIS 160
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGY------FQLLFMTPEKACIIP--I 116
L++DQ++ L+ GI++ L +A T + E F+LL++TPEK +
Sbjct: 161 LVEDQILQLRSLGIDSSSL-NANTSKEEAKRVEDAITNKDSKFRLLYVTPEKLAKSKKMM 219
Query: 117 SFWSKLLKAG-VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
+ K L G + L A+DE HC S+WGHDFR +Y L+ L+ GVP + LTATAT V
Sbjct: 220 NKLEKSLSVGFLKLIAIDEVHCCSQWGHDFRTDYSFLNVLKRQFKGVPILGLTATATSNV 279
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSV----AGAGSI 231
D+ + L ++ A F+R NL Y KV+ + S DE +EI K++ AG I
Sbjct: 280 LDDVKDMLGIQAALTFRAGFNRSNLKY--KVVQKPGS-EDECTEEIAKTIKRDFAGQTGI 336
Query: 232 IVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMG 291
I YC++ D E+++KALK G+KA YH M R AH+ +I +I+V+VAT+AFGMG
Sbjct: 337 I-YCLSRNDCEKVAKALKSHGIKAKHYHAYMEPVDRSGAHQGWISGKIQVIVATVAFGMG 395
Query: 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTEN 351
IDKP+VR VIH+ PK++E+YYQESGR GRDG + C LYY + D + S +
Sbjct: 396 IDKPNVRFVIHHSLPKSIENYYQESGRAGRDGQPATCILYYRLA-----DIFKQSSMVQQ 450
Query: 352 QRTAIMESLLAAQRYCL-LTTCRR 374
+RT I ++L RY +TCRR
Sbjct: 451 ERTGI-QNLYNMVRYAADSSTCRR 473
>sp|O34748|RECQ_BACSU Probable ATP-dependent DNA helicase RecQ OS=Bacillus subtilis
(strain 168) GN=recQ PE=3 SV=1
Length = 591
Score = 275 bits (704), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 153/375 (40%), Positives = 218/375 (58%), Gaps = 12/375 (3%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKR-DCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
S L YFGY FR Q + I+ + E R + +M TG GKS+CYQ+P L+ T +V+SP
Sbjct: 7 SLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISP 66
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKA---ETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV +L++ GINA ++ S Q++ + + + G ++L ++TPE+ + I F
Sbjct: 67 LISLMKDQVDALEEAGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPER--LTSIEF 124
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRI 177
L V L A+DEAHCIS+WGHDFR Y+ ++ L L P + ALTATAT +V
Sbjct: 125 IRILQGIDVPLVAIDEAHCISQWGHDFRPSYRNIEILFRELHDKPVIMALTATATPEVHD 184
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI L ++ F R+NL + V F+DE VQ + AG IVY T
Sbjct: 185 DICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRFIDEYVQNN-RHEAG----IVYTAT 239
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K+ + I + LK+ V+AG YHG + R+E F+ DE++VMVAT AFGMGIDK ++
Sbjct: 240 RKEADRIYERLKRNQVRAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMGIDKSNI 299
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R V+H PK +ESYYQE+GR GRDG+AS C L ++ + F +S+ E ++ +
Sbjct: 300 RFVLHAQIPKDMESYYQEAGRAGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDL 359
Query: 358 ESLLAAQRYCLLTTC 372
+ L YC C
Sbjct: 360 KKLRQMVDYCHTEDC 374
>sp|A8WK63|RECQ1_CAEBR Putative ATP-dependent DNA helicase Q1 OS=Caenorhabditis briggsae
GN=CBG24191 PE=3 SV=1
Length = 618
Score = 273 bits (697), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 160/383 (41%), Positives = 227/383 (59%), Gaps = 23/383 (6%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK F FRP Q I ++ K D +V+++TG GKSLCYQLP L+ LV+SPL+S
Sbjct: 78 LKNKFRLEKFRPLQSAAINAVMSKEDAIVILSTGGGKSLCYQLPALLAKGLTLVISPLVS 137
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQ------TKAETGYFQLLFMTPEKACIIP--I 116
L++DQ+M L++ GI+A L + + TK T +LL++TPEK +
Sbjct: 138 LVEDQIMQLQKLGIDAASLNANTPKDEAKRVEQAITKGST-ELRLLYVTPEKLAKSKRMM 196
Query: 117 SFWSKLLKAG-VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
+ K L G + L A+DE HC S+WGHDFR +Y L+ L+ GVP + LTATAT V
Sbjct: 197 NQLEKSLGVGYLKLIAIDEVHCCSQWGHDFRTDYSFLNVLKRQFKGVPILGLTATATSNV 256
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVA---GAGSII 232
D+ L + V A F+R NL Y KV+ + S DE V++I++++ + I
Sbjct: 257 LDDVKKMLGIPVAIVFRAGFNRANLNY--KVLTKPGS-EDECVEKIVRTIKRKFSGKTGI 313
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
+YC++ D E+++K+LK G++A YH M R AH+ ++ EI+V+VAT+AFGMGI
Sbjct: 314 IYCLSRNDCEKLAKSLKANGIRAKHYHAYMEPVDRSAAHQKWVSGEIQVIVATVAFGMGI 373
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ 352
DKPDVR VIH+ PK++E+YYQESGR GRDG+ + C LYY S D + S + +
Sbjct: 374 DKPDVRFVIHHSLPKSIENYYQESGRAGRDGLPATCILYYRMS-----DIFKQSSMIQQE 428
Query: 353 RTAIMESLLAAQRYCLLT-TCRR 374
+T I +L RY T TCRR
Sbjct: 429 QTGIA-NLYNMVRYASDTVTCRR 450
>sp|Q5UPX0|YR290_MIMIV Putative ATP-dependent RNA helicase R290 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R290 PE=3 SV=1
Length = 548
Score = 263 bits (671), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 143/377 (37%), Positives = 220/377 (58%), Gaps = 25/377 (6%)
Query: 9 FGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQD 68
+GY FRP Q ++I ++I D ++ T +GKSLC+Q+P L K A+++SPLISLM+D
Sbjct: 25 YGYDNFRPRQYEIINKVINGEDVCAILMTSAGKSLCFQIPALYLDKPAIIISPLISLMED 84
Query: 69 QVMSLKQRGINAEFLGSAQTDSSVQTKAETGY------FQLLFMTPE-----KACIIPIS 117
Q + L++ GI S +S+V+ KA+ ++ ++++PE K I+ +
Sbjct: 85 QRLILEKLGI-----SSCCYNSNVENKAQMRKDIMQFKYKFIYVSPESVVHLKDLIVKLE 139
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
+ G+ L A+DEAHCIS +G DFR Y+++ + L VP +ALTATAT V
Sbjct: 140 DFQ-----GISLIAIDEAHCISAYGFDFRTAYREITFFKEILPNVPILALTATATNIVAK 194
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
DI L+LK ASFDR NL+ V+ + ++ +++V I K S+I+YC+T
Sbjct: 195 DICKVLQLKTNEPIKASFDRPNLYLEVRT--KSKNPANDIVPIINK--YPNQSVIIYCLT 250
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K+ ++I+ L V G YH + ++ + + H FI ++I+++VAT+AFGMGI+KPDV
Sbjct: 251 KKETQKIADILTVHKVVCGIYHAGLSNEHKTKTHTNFINNKIKIVVATIAFGMGINKPDV 310
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHYG PK +E YYQE GR GRDG S C+ +Y +F + ++ N + +
Sbjct: 311 RVVIHYGAPKNIEGYYQEIGRAGRDGEKSYCYAFYNFQDFMIQRRFISQNNNPNYQKTQL 370
Query: 358 ESLLAAQRYCLLTTCRR 374
L ++Y L TCRR
Sbjct: 371 ALLEQMKKYVTLRTCRR 387
>sp|Q9FT74|RQL1_ARATH ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana
GN=RECQL1 PE=2 SV=1
Length = 606
Score = 263 bits (671), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 158/386 (40%), Positives = 226/386 (58%), Gaps = 30/386 (7%)
Query: 9 FGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQD 68
FG VFRP Q + +E++DC V+M TG GKSLCYQLP + +V+SPL+SL+QD
Sbjct: 202 FGNKVFRPLQHQACRASMERKDCFVLMPTGGGKSLCYQLPATLKAGVTIVISPLLSLIQD 261
Query: 69 QVMSLKQR-GINAEFLGSAQTDSSV-----QTKAETGYFQLLFMTPEKACIIPISFWSKL 122
Q+++L + GI A FL S QT S + + + +LL++TPEK I+ S
Sbjct: 262 QIVALNLKFGIPATFLNSQQTSSQAAAVLQELRRDNPSCKLLYVTPEK-----IAGSSSF 316
Query: 123 LKAGVCL--------FAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEK 174
L+ CL F VDEAHC+S+WGHDFR +Y++L L+ VP +ALTATATE
Sbjct: 317 LETLRCLDRKGLLAGFVVDEAHCVSQWGHDFRPDYRELGCLKQNFPRVPVMALTATATES 376
Query: 175 VRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVY 234
V D++ SL++ V SFDR NL Y +VI + + + +L QE+L+ S IVY
Sbjct: 377 VCQDVLKSLRIPRAPVLKMSFDRINLKY--EVIVKTKEPLKQL-QELLRDRFKDQSGIVY 433
Query: 235 CMTIKDVEEISKALKQ-LGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGID 293
C++ + +++K L + VK YH + +K R + R + E+R++ AT+AFGMGID
Sbjct: 434 CLSKSECVDVAKFLNEKCKVKTVYYHAGVPAKQRVDVQRKWQTGEVRIVCATIAFGMGID 493
Query: 294 KPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYC----GESQT 349
K DVR VIH K +ESYYQESGR GRDG+ + C Y + +F++ C G+ +
Sbjct: 494 KADVRFVIHNTLSKAVESYYQESGRAGRDGLQAQCICLYQKKDFSR--VVCMLRNGQGRN 551
Query: 350 ENQRTAIMESLLAAQRYC-LLTTCRR 374
++ + M Q+YC L T CRR
Sbjct: 552 MDRFKSAMAQAKKMQQYCELKTECRR 577
>sp|Q8L840|RQL4A_ARATH ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana
GN=RECQL4A PE=2 SV=1
Length = 1188
Score = 261 bits (667), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 144/344 (41%), Positives = 205/344 (59%), Gaps = 15/344 (4%)
Query: 6 KKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISL 65
KK FG FRP Q+++I + D V+M TG GKSL YQLP L+ G LV+SPL+SL
Sbjct: 446 KKVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICGGITLVISPLVSL 505
Query: 66 MQDQVMSLKQRGINAEFLGSAQTDSSVQTK------AETGYFQLLFMTPEKACIIP--IS 117
+QDQ+M+L Q I A L SA + + Q K +E ++LL++TPEK +
Sbjct: 506 IQDQIMNLLQANIPAASL-SAGMEWAEQLKIFQELNSEHSKYKLLYVTPEKVAKSDSLLR 564
Query: 118 FWSKLLKAGV-CLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
L G+ F +DEAHC+S+WGHDFR +Y+ L L+ +P +ALTATAT V+
Sbjct: 565 HLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFPNIPVLALTATATASVK 624
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGV-KVINRGQSFVDELVQEILKSVAGAGSIIVYC 235
D++ +L L N V SF+R NL+Y V + +D+ ++E G I+YC
Sbjct: 625 EDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLEDIDKFIKENHFDECG----IIYC 680
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
++ D E++S+ L++ G KA YHG M + R + +DEI ++ AT+AFGMGI+KP
Sbjct: 681 LSRMDCEKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICATVAFGMGINKP 740
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAK 339
DVR VIH+ PK++E Y+QE GR GRDG S C LYY ++ +
Sbjct: 741 DVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYGYGDYIR 784
>sp|Q6AYJ1|RECQ1_RAT ATP-dependent DNA helicase Q1 OS=Rattus norvegicus GN=Recql PE=2
SV=1
Length = 621
Score = 261 bits (667), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 144/343 (41%), Positives = 206/343 (60%), Gaps = 22/343 (6%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ F FRP Q + + + ++D +VM TG GKSLCYQLP L + LV+ PLIS
Sbjct: 83 LRDVFKLQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQLPALCSDGFTLVICPLIS 142
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSV-----QTKAETGYFQLLFMTPEKACIIPISFW 119
LM+DQ+M L+Q GI+A L S+ + V + + + +L+++TPEK + F
Sbjct: 143 LMEDQLMVLQQLGISATMLNSSSSKEHVKCVHTEMMNKNSHLKLIYVTPEKIAKSKM-FM 201
Query: 120 SKLLKA-------GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATAT 172
S+L KA GV AVDE HC S+WGHDFR +YK L L+ + + LTATAT
Sbjct: 202 SRLEKAYEAGRLTGV---AVDEVHCCSQWGHDFRPDYKALGILKRQFPNISLIGLTATAT 258
Query: 173 EKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG---AG 229
V D L ++ ASF+R NL+Y V+ + S ++ ++ I + G
Sbjct: 259 NHVLKDAQKILCVEKCLTFTASFNRPNLYYEVR---QKPSSAEDFIENIANLINGRYKGK 315
Query: 230 SIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFG 289
S I+YC + KD E+++ +L++LGV+AGTYH M + R + H + +E++V+VAT+AFG
Sbjct: 316 SGIIYCFSQKDSEQVTISLQKLGVRAGTYHANMEPEDRTKVHTQWSANELQVVVATVAFG 375
Query: 290 MGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYY 332
MGIDKPDVR VIH+ K++E+YYQESGR GRD + C LYY
Sbjct: 376 MGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDWRADCILYY 418
>sp|Q9VGI8|BLM_DROME Bloom syndrome protein homolog OS=Drosophila melanogaster GN=mus309
PE=1 SV=1
Length = 1487
Score = 261 bits (667), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 155/378 (41%), Positives = 222/378 (58%), Gaps = 15/378 (3%)
Query: 9 FGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQD 68
FG FRP Q VI + DC V+M TG GKSLCYQLP ++T +V+SPL SL+ D
Sbjct: 733 FGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVISPLKSLIFD 792
Query: 69 QVMSLKQRGINAEFLGSAQTDSSVQT-----KAETGYFQLLFMTPEKACIIPISFWSKL- 122
Q+ L I A+ L Q + V +++ +LL++TPEK F L
Sbjct: 793 QINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKISSS-ARFQDTLD 851
Query: 123 -LKAG--VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
L + + F +DEAHC+S+WGHDFR +YK+L L+ VP +ALTATAT +VR+DI
Sbjct: 852 TLNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIALTATATPRVRLDI 911
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+ L LKN ++SF+R NL Y V + +G S +D++ + I +S S I+YC++ K
Sbjct: 912 LAQLNLKNCKWFLSSFNRSNLRYRV-LPKKGVSTLDDISRYI-RSKPQHFSGIIYCLSRK 969
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
+ +E SK + + GV+A +YH + RE + ++ ++RV+ AT+AFGMGIDKPDVR
Sbjct: 970 ECDETSKKMCKDGVRAVSYHAGLTDTDRESRQKDWLTGKMRVICATVAFGMGIDKPDVRF 1029
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNF--AKGDFYCGESQTENQRTAIM 357
V+HY PK++E YYQE+GR GRDG + C LYY S+ K ++ N + +
Sbjct: 1030 VLHYSLPKSIEGYYQEAGRAGRDGDVADCILYYNYSDMLRIKKMLDSDKALQYNVKKIHV 1089
Query: 358 ESLLAAQRYCL-LTTCRR 374
++L YC LT CRR
Sbjct: 1090 DNLYRIVGYCENLTDCRR 1107
>sp|P46063|RECQ1_HUMAN ATP-dependent DNA helicase Q1 OS=Homo sapiens GN=RECQL PE=1 SV=3
Length = 649
Score = 260 bits (665), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 143/341 (41%), Positives = 204/341 (59%), Gaps = 16/341 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ F FRP Q + I + ++ +VM TG GKSLCYQLP L + LV+ PLIS
Sbjct: 83 LQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLIS 142
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQ-TKAE----TGYFQLLFMTPEKACIIPISFW 119
LM+DQ+M LKQ GI+A L ++ + V+ AE +L+++TPEK + F
Sbjct: 143 LMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKM-FM 201
Query: 120 SKLLKA----GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
S+L KA AVDE HC S+WGHDFR +YK L L+ + LTATAT V
Sbjct: 202 SRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHV 261
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG---AGSII 232
D L ++ + ASF+R NL+Y V+ + S ++ +++I+K + G S I
Sbjct: 262 LTDAQKILCIEKCFTFTASFNRPNLYYEVR---QKPSNTEDFIEDIVKLINGRYKGQSGI 318
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
+YC + KD E+++ +L+ LG+ AG YH + + + HR + +EI+V+VAT+AFGMGI
Sbjct: 319 IYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGI 378
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYA 333
DKPDVR VIH+ K++E+YYQESGR GRD + + C LYY
Sbjct: 379 DKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYG 419
>sp|Q9Z129|RECQ1_MOUSE ATP-dependent DNA helicase Q1 OS=Mus musculus GN=Recql PE=1 SV=2
Length = 648
Score = 259 bits (663), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 146/341 (42%), Positives = 205/341 (60%), Gaps = 16/341 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ F FRP Q + I + ++D +VM TG GKSLCYQLP L + LV+ PLIS
Sbjct: 83 LQNVFKLQKFRPLQLETINVTMARKDIFLVMPTGGGKSLCYQLPALCSDGFTLVICPLIS 142
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQ-TKAE----TGYFQLLFMTPEKACIIPISFW 119
LM+DQ+M LKQ GI+A L ++ + V+ AE +L+++TPEK + F
Sbjct: 143 LMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSQLKLIYVTPEKIAKSKM-FM 201
Query: 120 SKLLKA----GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
S+L KA + AVDE HC S+WGHDFR +YK L L+ + LTATAT V
Sbjct: 202 SRLEKAYEAGRLTGAAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLMGLTATATNHV 261
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG---AGSII 232
D+ L + ASF+R NLFY V+ + S ++ ++I+K + G S I
Sbjct: 262 LKDVQKILCVGKCLTFTASFNRPNLFYEVR---QKPSSAEDFTEDIVKLINGRYKGQSGI 318
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
+YC + KD E+I+ +L++LG+ AGTYH M + + + H + +E++V+VAT+AFGMGI
Sbjct: 319 IYCFSQKDSEQITISLQKLGIHAGTYHANMEPEDKTKVHTQWSANELQVVVATVAFGMGI 378
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYA 333
DKPDVR VIH+ K++E+YYQESGR GRD + C LYY
Sbjct: 379 DKPDVRFVIHHSMSKSMENYYQESGRAGRDDSRADCILYYG 419
>sp|Q9FT70|RQL4B_ARATH ATP-dependent DNA helicase Q-like 4B OS=Arabidopsis thaliana
GN=RECQL4B PE=2 SV=1
Length = 1150
Score = 259 bits (661), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 140/348 (40%), Positives = 208/348 (59%), Gaps = 23/348 (6%)
Query: 6 KKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISL 65
K FG FRP Q+++I + D V+M TG GKSL YQLP L+ LV+SPL+SL
Sbjct: 462 KLVFGNHSFRPNQREIINATMSGCDVFVLMPTGGGKSLTYQLPALLCAGITLVISPLVSL 521
Query: 66 MQDQVMSLKQRGINAEFLGSA-----QTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
+QDQ+M+L Q I+A L + Q + + +E ++LL++TPEK ++
Sbjct: 522 IQDQIMNLLQTNISAASLSAGMEWAEQLEILQELSSEKSKYKLLYVTPEK-----VAKSE 576
Query: 121 KLLK--------AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATAT 172
LL+ + + F +DEAHC+S+WGHDFR +Y+ L L+ +P +ALTATAT
Sbjct: 577 SLLRHLEILNSRSLLARFVIDEAHCVSQWGHDFRPDYQGLGVLKQKFPNIPMLALTATAT 636
Query: 173 EKVRIDIINSLKLKNPYVTIASFDRKNLFYGV-KVINRGQSFVDELVQEILKSVAGAGSI 231
V+ D++ +L L N V SF+R NL+Y V N+ +D+ ++E G
Sbjct: 637 TSVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTNKCLEDIDKFIRENHFDECG---- 692
Query: 232 IVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMG 291
I+YC++ D E++++AL+ G KA YHG M R + + +DEI ++ AT+AFGMG
Sbjct: 693 IIYCLSRMDCEKVTEALRVFGHKAAFYHGSMDPGKRAFVQKQWSKDEINIICATVAFGMG 752
Query: 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAK 339
I+KPDVR VIH+ PK++E Y+QE GR GRDG S C LYY+ +++ +
Sbjct: 753 INKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYTDYIR 800
>sp|Q5RF63|RECQ1_PONAB ATP-dependent DNA helicase Q1 OS=Pongo abelii GN=RECQL PE=2 SV=1
Length = 649
Score = 259 bits (661), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 142/341 (41%), Positives = 203/341 (59%), Gaps = 16/341 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ F FRP Q + I + ++ +VM TG GK LCYQLP L + LV+ PLIS
Sbjct: 83 LQNVFKLQKFRPLQLETINVTMAGKEVFLVMPTGGGKGLCYQLPALCSDGFTLVICPLIS 142
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQ-TKAE----TGYFQLLFMTPEKACIIPISFW 119
LM+DQ+M LKQ GI+A L ++ + V+ AE +L+++TPEK + F
Sbjct: 143 LMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKM-FM 201
Query: 120 SKLLKA----GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
S+L KA AVDE HC S+WGHDFR +YK L L+ + LTATAT V
Sbjct: 202 SRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHV 261
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG---AGSII 232
D L ++ + ASF+R NL+Y V+ + S ++ +++I+K + G S I
Sbjct: 262 LTDAQKILCIEKCFTFTASFNRPNLYYEVR---QKPSNTEDFIEDIVKLINGRYKGQSGI 318
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
+YC + KD E+++ +L+ LG+ AG YH + + + HR + +EI+V+VAT+AFGMGI
Sbjct: 319 IYCFSQKDSEQVTVSLRNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGI 378
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYA 333
DKPDVR VIH+ K++E+YYQESGR GRD + + C LYY
Sbjct: 379 DKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYG 419
>sp|O88700|BLM_MOUSE Bloom syndrome protein homolog OS=Mus musculus GN=Blm PE=1 SV=1
Length = 1416
Score = 256 bits (654), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 152/394 (38%), Positives = 215/394 (54%), Gaps = 30/394 (7%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ K FG FR Q + I + DC ++M TG GKSLCYQLP V+ +V+S
Sbjct: 663 MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVIS 722
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSS-----VQTKAETGYFQLLFMTPEKACIIP 115
PL SL+ DQV L I A +L +TDS +Q + +LL++TPEK C
Sbjct: 723 PLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEKVCASN 782
Query: 116 --ISFWSKLLKAGV-CLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATAT 172
IS L + + F +DEAHC+S+WGHDFR +YK+++ LR VP +ALTATA
Sbjct: 783 RLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATAN 842
Query: 173 EKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSII 232
+V+ DI+ LK+ P V SF+R NL Y V + D L E ++ S I
Sbjct: 843 PRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCL--EWIRKHHPYDSGI 900
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEA-HRLFIRDEIRVMVATMAFGMG 291
+YC++ ++ + ++ L++ G+ A YH + AR+E H+ +D +V+ AT+AFGMG
Sbjct: 901 IYCLSRRECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQVICATIAFGMG 960
Query: 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAK----------GD 341
IDKPDVR VIH PK++E YYQESGR GRDG S C L+Y + + G+
Sbjct: 961 IDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCVLFYTYHDVTRLKRLIMMEKDGN 1020
Query: 342 FYCGESQTENQRTAIMESLLAAQRYCL-LTTCRR 374
++ E+ N L + YC +T CRR
Sbjct: 1021 YHTKETHVNN--------LYSMVHYCENITECRR 1046
>sp|O18017|BLM_CAEEL Bloom syndrome protein homolog OS=Caenorhabditis elegans GN=him-6
PE=2 SV=2
Length = 988
Score = 256 bits (654), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 153/387 (39%), Positives = 220/387 (56%), Gaps = 17/387 (4%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ TLK FG++ FR QK I + D V+M TG+GKSLCYQLP ++ +VVS
Sbjct: 235 LYDTLKSKFGFNQFRHRQKQCILSTLMGHDTFVLMPTGAGKSLCYQLPAVILPGVTVVVS 294
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTK--AETGY----FQLLFMTPEKACI- 113
PL SL++DQ M +K+ GI E L +A + Q K AE G +LL++TPEK
Sbjct: 295 PLRSLIEDQKMKMKELGIGCEAL-TADLGAPAQEKIYAELGSGNPSIKLLYVTPEKISAS 353
Query: 114 --IPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLG--VPFVALTA 169
+ F+ + + F +DEAHC+S+WGHDFR +Y +L LR VP +ALTA
Sbjct: 354 GRLNSVFFDLHRRGLLARFVIDEAHCVSQWGHDFRPDYTKLSSLREKYANPPVPIIALTA 413
Query: 170 TATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAG 229
TAT K+ D + LK++N + I+SF R NL Y + + +S ++ V E +K +
Sbjct: 414 TATPKIVTDARDHLKMQNSKLFISSFVRDNLKYDL-IPKAARSLIN--VVEKMKQLYPGK 470
Query: 230 SIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFG 289
S IVYC++ K+ E + L + G+ A YH + R R +I ++ V+ AT+AFG
Sbjct: 471 SGIVYCLSRKECETVQMMLTKAGLSAEVYHAGLNDNLRVSVQRSWIANKFDVICATIAFG 530
Query: 290 MGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQT 349
MGIDKPDVR VIHY PK++E YYQE+GR GRDG+ S C + Y+ + + E T
Sbjct: 531 MGIDKPDVRFVIHYSLPKSIEGYYQETGRAGRDGMPSYCLMLYSYHDSIRLRRMIEEGNT 590
Query: 350 ENQ-RTAIMESLLAAQRYCL-LTTCRR 374
R+ + ++L YC ++ CRR
Sbjct: 591 TTGVRSMHLNNVLQVVAYCENVSVCRR 617
>sp|P35187|SGS1_YEAST ATP-dependent helicase SGS1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SGS1 PE=1 SV=1
Length = 1447
Score = 255 bits (652), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 144/346 (41%), Positives = 202/346 (58%), Gaps = 27/346 (7%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV-TGKT---ALVVS 60
L + F FRP Q + + ++ +D V+M TG GKSLCYQLP +V +GKT +V+S
Sbjct: 670 LHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSGKTHGTTIVIS 729
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET------GYFQLLFMTPE----- 109
PLISLMQDQV L + I A S T + + +T G L++++PE
Sbjct: 730 PLISLMQDQVEHLLNKNIKASMFSSRGT---AEQRRQTFNLFINGLLDLVYISPEMISAS 786
Query: 110 KACIIPISFWSKLLKAG-VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALT 168
+ C IS +L G + VDEAHC+S WGHDFR +YK+L + +P +ALT
Sbjct: 787 EQCKRAIS---RLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDIPMIALT 843
Query: 169 ATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSF-VDELVQEILKSVAG 227
ATA+E+VR+DII++L+LK P SF+R NL+Y V + F + + V+ K+ G
Sbjct: 844 ATASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKKTKNTIFEICDAVKSRFKNQTG 903
Query: 228 AGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMA 287
I+YC + K E+ S +++ G+K YH M R + + DEI+V+ AT+A
Sbjct: 904 ----IIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICATVA 959
Query: 288 FGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYA 333
FGMGIDKPDVR V H+ P+TLE YYQE+GR GRDG S C Y++
Sbjct: 960 FGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFS 1005
>sp|Q9DEY9|BLM_XENLA Bloom syndrome protein homolog OS=Xenopus laevis GN=blm PE=2 SV=1
Length = 1364
Score = 254 bits (649), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 139/342 (40%), Positives = 199/342 (58%), Gaps = 11/342 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ K FG FR Q + I + DC ++M TG GKSLCYQLP ++ +V+S
Sbjct: 607 MMKIFHKKFGLHRFRTNQLEAINACLCGEDCFILMPTGGGKSLCYQLPGCISPGVTIVIS 666
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSS-----VQTKAETGYFQLLFMTPEKACIIP 115
PL SL+ DQV L I A +L +TD+ +Q + +LL++TPEK C
Sbjct: 667 PLRSLIVDQVQKLTSLDIPATYLTGDKTDAEAASIYLQLSKKDPIIKLLYVTPEKVCAST 726
Query: 116 --ISFWSKLLKAGV-CLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATAT 172
IS L + + F +DEAHC+S+WGHDFR +YK+L+ LR VP +ALTATA
Sbjct: 727 RLISTMENLYERQLLARFVIDEAHCVSQWGHDFRPDYKRLNVLRQKFQSVPMMALTATAN 786
Query: 173 EKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSII 232
+V+ DI+N LK+ P + SF+R NL Y +V+ + V E +K S I
Sbjct: 787 PRVKKDILNQLKMTKPQIFTMSFNRDNLKY--EVLPKKPKRVALDCVEWIKKHHPNDSGI 844
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEA-HRLFIRDEIRVMVATMAFGMG 291
+YC++ + + ++ L++ G+ A YH + R+ H+ +D+ +V+ AT+AFGMG
Sbjct: 845 IYCLSRHECDTMADTLQKEGLAALAYHAGLADSNRDYVQHKWINQDDCQVICATIAFGMG 904
Query: 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYA 333
IDKPDVR+VIH PK++E YYQESGR GRDG S C L+Y+
Sbjct: 905 IDKPDVRYVIHASLPKSVEGYYQESGRAGRDGETSHCLLFYS 946
>sp|P54132|BLM_HUMAN Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1 SV=1
Length = 1417
Score = 251 bits (642), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 151/386 (39%), Positives = 213/386 (55%), Gaps = 14/386 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ K FG FR Q + I + DC ++M TG GKSLCYQLP V+ +V+S
Sbjct: 655 MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVIS 714
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSS-----VQTKAETGYFQLLFMTPEKACIIP 115
PL SL+ DQV L I A +L +TDS +Q + +LL++TPEK C
Sbjct: 715 PLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASN 774
Query: 116 --ISFWSKLLKAGV-CLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATAT 172
IS L + + F +DEAHC+S+WGHDFR +YK+++ LR VP +ALTATA
Sbjct: 775 RLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATAN 834
Query: 173 EKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSII 232
+V+ DI+ LK+ P V SF+R NL Y V + D L E ++ S I
Sbjct: 835 PRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCL--EWIRKHHPYDSGI 892
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFI-RDEIRVMVATMAFGMG 291
+YC++ ++ + ++ L++ G+ A YH + AR+E + +I +D +V+ AT+AFGMG
Sbjct: 893 IYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAFGMG 952
Query: 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA--KGDFYCGESQT 349
IDKPDVR VIH PK++E YYQESGR GRDG S C L+Y + K +
Sbjct: 953 IDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGN 1012
Query: 350 ENQRTAIMESLLAAQRYCL-LTTCRR 374
+ R +L + YC +T CRR
Sbjct: 1013 HHTRETHFNNLYSMVHYCENITECRR 1038
>sp|Q9I920|BLM_CHICK Bloom syndrome protein homolog (Fragment) OS=Gallus gallus GN=BLM
PE=2 SV=1
Length = 1142
Score = 246 bits (628), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 141/353 (39%), Positives = 199/353 (56%), Gaps = 21/353 (5%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ + FG FR Q + I + DC ++M TG GKSLCYQLP V+ +V+S
Sbjct: 385 MLKIFHRKFGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAGVTVVIS 444
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSS-----VQTKAETGYFQLLFMTPEKACIIP 115
PL SL+ DQV LK I A +L TD+ +Q + +LL++TPEK C
Sbjct: 445 PLRSLIIDQVQKLKTLDIAATYLTGDITDADASKTYMQLSKKDPIIKLLYVTPEKVCAS- 503
Query: 116 ISFWSKLLKAGVCL--------FAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVAL 167
++LL A L F +DEAHC+S+WGHDFR +YK+L+ LR VP +AL
Sbjct: 504 ----NRLLSALENLYDRKLLARFVIDEAHCVSQWGHDFRKDYKRLNMLRKKFHSVPMMAL 559
Query: 168 TATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG 227
TATA +V+ DI N L++ P V SF+R NL Y V + +D L E +K
Sbjct: 560 TATANPRVQKDIQNQLEMLKPQVFTMSFNRHNLKYDVLPKKPKKVAMDCL--EWIKKYHP 617
Query: 228 AGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDE-IRVMVATM 286
S I+YC++ + + + L++ G+ A YH + R+ + ++ E +V+ AT+
Sbjct: 618 HDSGIIYCLSRHECDTTAAILQKEGLAALAYHAGLTDSNRDLVQKKWVNQEGCQVICATI 677
Query: 287 AFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAK 339
AFGMGIDKPDVR+VIH PK++E YY ESGR GRDG S C L+Y+ S+ +
Sbjct: 678 AFGMGIDKPDVRYVIHASLPKSVEGYYHESGRAGRDGEMSHCLLFYSYSDVTR 730
>sp|P50729|RECS_BACSU Probable ATP-dependent DNA helicase RecS OS=Bacillus subtilis
(strain 168) GN=recS PE=3 SV=1
Length = 496
Score = 237 bits (605), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 136/337 (40%), Positives = 204/337 (60%), Gaps = 8/337 (2%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLI 63
TL ++FG++ F+ Q+D+I+ I+ +D + ++ TG GKSLCYQLP + L+VSPL+
Sbjct: 7 TLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLL 66
Query: 64 SLMQDQVMSLKQRG-INAEFLGSAQTDSSVQTKAETGY-FQLLFMTPEKACIIPISFWSK 121
SLM+DQV LK RG A L S Q E + ++ L+++PE A P K
Sbjct: 67 SLMEDQVQQLKARGEKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPE-ALQSPYVL-EK 124
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + LF +DEAHCISEWGHDFR +Y +L +LR L P +ALTATAT++ D++N
Sbjct: 125 LKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRKKLGHPPVLALTATATKETLQDVMN 184
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L+L++ + S +R N+ V+ +D ++Q +++++ G G IVYC T K
Sbjct: 185 LLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQ-LVENLQGPG--IVYCPTRKWA 241
Query: 242 EEISKALK-QLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
+E++ +K + +A YHG + S R + FI +++ V+ T AFGMG+DKPD+R+V
Sbjct: 242 KELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNF 337
IH+ P+T E++ QE GR GRDG SV L A +F
Sbjct: 302 IHFHLPQTAEAFMQEIGRAGRDGKPSVSILLRAPGDF 338
>sp|Q09811|HUS2_SCHPO ATP-dependent DNA helicase hus2/rqh1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rqh1 PE=1 SV=1
Length = 1328
Score = 235 bits (600), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 148/397 (37%), Positives = 224/397 (56%), Gaps = 43/397 (10%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTA----LVVS 60
LK F FR Q + I + +D ++M TG GKSLCYQLP ++ G + LV+S
Sbjct: 511 LKHKFHLKGFRKNQLEAINGTLSGKDVFILMPTGGGKSLCYQLPAVIEGGASRGVTLVIS 570
Query: 61 PLISLMQDQVMSLKQRGINAEFL-GSAQTDSSVQT----KAETGYFQLLFMTPE----KA 111
PL+SLMQDQ+ L++ I + L G D Q A+ +LL++TPE
Sbjct: 571 PLLSLMQDQLDHLRKLNIPSLPLSGEQPADERRQVISFLMAKNVLVKLLYVTPEGLASNG 630
Query: 112 CIIPI--SFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTA 169
I + S + + L A + +DEAHC+S WGHDFR +YKQL LR G+PF+ALTA
Sbjct: 631 AITRVLKSLYERKLLARIV---IDEAHCVSHWGHDFRPDYKQLGLLRDRYQGIPFMALTA 687
Query: 170 TATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAG 229
TA E V+ DIIN+L+++N +SF+R NLFY +K +L E+ + ++
Sbjct: 688 TANEIVKKDIINTLRMENCLELKSSFNRPNLFYEIKPKK-------DLYTELYRFISNGH 740
Query: 230 ---SIIVYCMTIKDVEEISKALKQ-LGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVAT 285
S I+YC++ E+++ L+ G+KA YH + R+ + +++VAT
Sbjct: 741 LHESGIIYCLSRTSCEQVAAKLRNDYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVAT 800
Query: 286 MAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN---FAK--- 339
+AFGMG+DK DVR VIH+ PK+LE YYQE+GR GRDG + C ++Y+ + F K
Sbjct: 801 IAFGMGVDKGDVRFVIHHSFPKSLEGYYQETGRAGRDGKPAHCIMFYSYKDHVTFQKLIM 860
Query: 340 -GDFYCGESQTENQRTAIMESLLAAQRYCL-LTTCRR 374
GD G+++T+ ++ ++ ++ ++C T CRR
Sbjct: 861 SGD---GDAETKERQRQMLRQVI---QFCENKTDCRR 891
>sp|O94762|RECQ5_HUMAN ATP-dependent DNA helicase Q5 OS=Homo sapiens GN=RECQL5 PE=1 SV=2
Length = 991
Score = 227 bits (578), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 140/355 (39%), Positives = 204/355 (57%), Gaps = 26/355 (7%)
Query: 3 STLKKYFGYSVFR-PYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
STLKK FG+ F+ P Q+ +++ +D V M TG+GKSLCYQLP L+ +VVS
Sbjct: 18 STLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALLAKGITIVVS 77
Query: 61 PLISLMQDQV---MSLKQR--GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACI-- 113
PLI+L+QDQV ++LK R +N++ + + + E ++L++TPE A
Sbjct: 78 PLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYITPEMAASSS 137
Query: 114 IPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATE 173
+ S + + + VDEAHC+S+WGHDFR +Y +L LR+ L P VALTATAT
Sbjct: 138 FQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPCVALTATATP 197
Query: 174 KVRIDIINSLKLKNPYVTIASFD----RKNLFYGVKVI--------NRGQSFVDELVQEI 221
+V+ D+ +L LK P +A F R NLFY V+ N + L QE
Sbjct: 198 QVQEDVFAALHLKKP---VAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLKALGQEA 254
Query: 222 LKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRV 281
K ++G G IVYC T + E+++ L GV A YH + + R ++ +++ V
Sbjct: 255 DKGLSGCG--IVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEEKVPV 312
Query: 282 MVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN 336
+VAT++FGMG+DK +VR V H+ K++ YYQESGR GRDG S C LYY+R++
Sbjct: 313 IVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRND 367
>sp|P73421|RECQ_SYNY3 ATP-dependent DNA helicase RecQ OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=recQ PE=3 SV=1
Length = 478
Score = 189 bits (479), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 118/337 (35%), Positives = 183/337 (54%), Gaps = 13/337 (3%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ L++ +GY FR Q +VI ++ +RDCLVV+ TG GKS+C+QLP L+ LVVS
Sbjct: 7 LEEALRRIWGYDHFRYPQGEVIDCLLARRDCLVVLPTGGGKSICFQLPALLGEGLTLVVS 66
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQ---TKAETGYFQLLFMTPEKACIIPIS 117
PL++LM+DQV SL+++ + A L S + + + +LL+++PE P+
Sbjct: 67 PLVALMEDQVQSLRRQNLPAACLHSQLSRPERKQVLYQLGQQQLKLLYLSPETLLSEPV- 125
Query: 118 FWSKLLKAGVCLFAV--DEAHCISEWGHDFRLEYKQLDKLRTFL----LGVPFVALTATA 171
W+ L + V L + DEAHC+ +WG FR Y++L LR L +P A TATA
Sbjct: 126 -WNLLRQPQVKLQGIMLDEAHCLVQWGDSFRPAYRRLGALRRGLGRDKGQIPLAAFTATA 184
Query: 172 TEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSI 231
+ + I+ L L++P S R L VK++ +L + +LK + +G
Sbjct: 185 DRQQQNLIVEGLNLRSPECFQVSPHRPQLHLKVKMVLSEYCRRQQLRRFLLKHLQESG-- 242
Query: 232 IVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMG 291
++Y T +++ L++ G + YHG +G R + + ++ +I +V T AFG+G
Sbjct: 243 LIYVRTRTMAINLAQWLQERGFDSEAYHGGLGPHQRRQLEQKWLTGQISSVVCTNAFGLG 302
Query: 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVC 328
IDKPD R V+HY P L Y QE GR GRD + C
Sbjct: 303 IDKPDTRWVLHYQAPLMLMDYLQEVGRAGRDLQPAEC 339
>sp|O94761|RECQ4_HUMAN ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=RECQL4 PE=1 SV=1
Length = 1208
Score = 186 bits (471), Expect = 3e-46, Method: Composition-based stats.
Identities = 126/356 (35%), Positives = 179/356 (50%), Gaps = 47/356 (13%)
Query: 9 FGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTA----LVVSPLIS 64
G+ FRP Q+ + RI+ L+V+ TG+GKSLCYQLP L+ + + LVVSPL+S
Sbjct: 476 LGHQAFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQLPALLYSRRSPCLTLVVSPLLS 535
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTD---SSVQTKAETGYFQLLFMTPEK----------A 111
LM DQV L + A + S T SV K +L +TPE A
Sbjct: 536 LMDDQVSGLPP-CLKAACIHSGMTRKQRESVLQKIRAAQVHVLMLTPEALVGAGGLPPAA 594
Query: 112 CIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVP-FVALTAT 170
+ P++F C +DEAHC+S+W H+FR Y ++ K+ +GV F+ LTAT
Sbjct: 595 QLPPVAF--------AC---IDEAHCLSQWSHNFRPCYLRVCKVLRERMGVHCFLGLTAT 643
Query: 171 ATEKVRIDIINSLKL-KNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAG 229
AT + D+ L + + P + + NL V + + L+Q K
Sbjct: 644 ATRRTASDVAQHLAVAEEPDLHGPAPVPTNLHLSVSMDRDTDQALLTLLQG--KRFQNLD 701
Query: 230 SIIVYCMTIKDVEEISKALKQL--------------GVKAGTYHGQMGSKAREEAHRLFI 275
SII+YC +D E I+ L+ A YH M S+ R R F+
Sbjct: 702 SIIIYCNRREDTERIAALLRTCLHAAWVPGSGGRAPKTTAEAYHAGMCSRERRRVQRAFM 761
Query: 276 RDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLY 331
+ ++RV+VAT+AFGMG+D+PDVR V+H G P + ESY Q GR GRDG + C L+
Sbjct: 762 QGQLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLF 817
>sp|Q0WVW7|RQL5_ARATH ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana
GN=RECQL5 PE=2 SV=2
Length = 911
Score = 184 bits (468), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 127/343 (37%), Positives = 186/343 (54%), Gaps = 14/343 (4%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L +GY FR Q I+ I+ ++V+ TG+GKSLCYQ+P ++ LVVSPL+S
Sbjct: 261 LNLVYGYDSFRDGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMILPGITLVVSPLVS 320
Query: 65 LMQDQVMSLKQRGINAEFLGSAQ-TDSSVQT--KAETGYFQLLFMTPEKACIIPISFWSK 121
LM DQ+ L I L S+Q + + +T K + G ++LF++PE+ ++ + F S
Sbjct: 321 LMIDQLKHLPSI-IKGGLLSSSQRPEEATETLRKLKEGIIKVLFVSPER--LLNVEFLSM 377
Query: 122 L-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTF--LLGVPFVALTATATEKVRID 178
+ V L VDEAHC+SEW H+FR Y +L F L +A+TATAT
Sbjct: 378 FRMSLSVSLVVVDEAHCVSEWSHNFRPSYMRLKASMLFSELKAECILAMTATATTMTLQA 437
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKV--INRGQSFVDELVQEILKSVAGAGSIIVYCM 236
+++SL++ + + S R N V + NR + + + K + SIIVYC
Sbjct: 438 VMSSLEIPSTNLIQKSQLRDNFELSVSLSGANRMKDLLILMESPPYKEIR---SIIVYCK 494
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ + ISK L+ + A YH + +K R F ++IRV+VAT+AFGMG+DK D
Sbjct: 495 FQYETDMISKYLRDNNINAKGYHSGLPAKDRVRIQESFCSNKIRVVVATVAFGMGLDKGD 554
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAK 339
V VIH+ P ++E Y QE GR GRDG S C L+Y + K
Sbjct: 555 VGAVIHFSVPGSMEEYVQEIGRAGRDGRLSYCHLFYDNDTYLK 597
>sp|Q9FT69|RQSIM_ARATH ATP-dependent DNA helicase Q-like SIM OS=Arabidopsis thaliana
GN=RECQSIM PE=2 SV=1
Length = 858
Score = 182 bits (463), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 99/214 (46%), Positives = 137/214 (64%), Gaps = 12/214 (5%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
S L+ FG S R +Q++ + + +DCLV+ ATGSGKSLC+Q+P L+TGK +V+SPL
Sbjct: 158 SILRNRFGISSLRSFQREALSTWVAHKDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 217
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKL 122
ISLM DQ + L + ++A FLGS Q D+ ++ KA G +Q++++ PE + I KL
Sbjct: 218 ISLMHDQCLKLSRHKVSACFLGSGQLDNCIEEKAMQGMYQIIYVCPETVVRL-IKPLQKL 276
Query: 123 LKA-GVCLFAVDEAHCISEWGHDFRLEYKQLDKLR--------TFL-LGVPFVALTATAT 172
K G+ LFA+DEAHC+S+WGHDFR Y++L LR FL VP +ALTATAT
Sbjct: 277 AKTHGIALFAIDEAHCVSKWGHDFRPHYRKLSVLRENFCASNLEFLEYDVPIMALTATAT 336
Query: 173 EKVRIDIINSLKL-KNPYVTIASFDRKNLFYGVK 205
V+ DI+ SL L K + + SF R NL + VK
Sbjct: 337 VNVQEDILESLHLSKETKIVLTSFFRPNLQFSVK 370
Score = 98.6 bits (244), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 70/103 (67%)
Query: 229 GSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAF 288
G I+Y T K+ I+K L +G+KA Y+ + K + H+ F ++++V+VAT+AF
Sbjct: 498 GLTIIYVPTRKESVNIAKYLCGVGLKAAAYNASLPKKHLRQVHQDFHDNKLQVVVATIAF 557
Query: 289 GMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLY 331
GMGIDK +VR +IHYG ++LE+YYQE+GR GRDG + C LY
Sbjct: 558 GMGIDKKNVRKIIHYGWLQSLEAYYQEAGRAGRDGELAECVLY 600
>sp|Q75NR7|RECQ4_MOUSE ATP-dependent DNA helicase Q4 OS=Mus musculus GN=Recql4 PE=2 SV=2
Length = 1216
Score = 174 bits (441), Expect = 9e-43, Method: Composition-based stats.
Identities = 123/352 (34%), Positives = 177/352 (50%), Gaps = 34/352 (9%)
Query: 9 FGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTA----LVVSPLIS 64
GY FRP Q+ I RI+ L+V+ TG+GKSLCYQLP L+ + + LVVSPL+S
Sbjct: 493 LGYRAFRPGQERAIMRILSGISTLLVLPTGAGKSLCYQLPALLYAQRSPCLTLVVSPLLS 552
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTD---SSVQTKAETGYFQLLFMTPEK--ACII--PIS 117
LM DQV L + A L S T SV K +L ++PE C P S
Sbjct: 553 LMDDQVSDLPS-CLKAACLHSGMTKKQRESVLKKVRAAQVHVLIVSPEALVGCGARGPGS 611
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVP-FVALTATATEKVR 176
+ +DE HC+S+W H+FR Y ++ K+ +GV F+ LTATAT
Sbjct: 612 LPQAAQLPPIAFACIDEVHCLSQWSHNFRPCYLRVCKVLREHMGVRCFLGLTATATRSTA 671
Query: 177 IDIINSLKLKNPYVTIASFD-RKNLFYGVKV-INRGQSFVDELVQEILKSVAGAGSIIVY 234
D+ L + + S + NL V + + Q+ V L + +++ S+I+Y
Sbjct: 672 RDVAQHLGIAGEFELSGSANIPANLHLSVSMDRDSDQALVTLLQGDRFRTL---DSVIIY 728
Query: 235 CMTIKDVEE-----ISKALKQLG----------VKAGTYHGQMGSKAREEAHRLFIRDEI 279
C T + ++ + L +G A YH M S+ R + F+R +
Sbjct: 729 C-TRERIQNGWLALLRTCLSMVGDSRPRGCGPEAIAEAYHAGMSSQERRRVQQAFMRGHL 787
Query: 280 RVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLY 331
R++VAT+AFGMG+D+PDVR V+H G P + ESY Q GR GRDG + C L+
Sbjct: 788 RMVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAIGRAGRDGKPAHCHLF 839
>sp|Q5EAK4|TLH1_SCHPO ATP-dependent DNA helicase tlh1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=tlh1 PE=2 SV=1
Length = 2100
Score = 118 bits (296), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 109/385 (28%), Positives = 180/385 (46%), Gaps = 31/385 (8%)
Query: 5 LKKYFGYSV-FRPYQK--DVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGK------- 54
L +Y+G FR ++ V ++ + + + V+ TG GKSL + +P L+ K
Sbjct: 1361 LSQYYGLEAKFRSLKQFQSVYFSLLNRMNLITVLPTGGGKSLSFLIPALIEKKRQTPGKV 1420
Query: 55 ---TALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKA 111
LV+ P++SL QD ++ + ++G+ G+ V+ ET L +T E A
Sbjct: 1421 MNMVTLVLVPMMSLRQDMMLRVNEKGLLV-CSGNWTAFKDVRLTLETQLPDLFILTYESA 1479
Query: 112 CIIP-ISFWSKLLKAG-VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTA 169
+ F+ L G + +DEAH + G +R + +L L P L+A
Sbjct: 1480 LTNSGLRFFESLATLGRLARVVIDEAHLLLTSG-AWRTALSRASRLSG--LYAPLHLLSA 1536
Query: 170 TATEKVRIDIINSLKLKNPYVTI-ASFDRKNLFYGVKVINRGQSFVD-ELVQEILKSVAG 227
T ++ + + N YV S R+N+FY + + + +D + + K G
Sbjct: 1537 TFPRQLEM-VARQTFCTNFYVLRETSTARENIFYFLHPYDNTEFLLDLRTLMKRTKVFEG 1595
Query: 228 AGSIIVYCMTIKDVEEISKALKQLGVKAGT----YHGQMGSKAREEAHRLF--IRDEIRV 281
G I++C T KDVE I + L Q + A T Y G + + R+ F + R+
Sbjct: 1596 DGRAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRI 1655
Query: 282 MVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD 341
M+AT AFG+GI+ VR V+HYG P + Y QE+GR GRDG ++ L+Y + + +
Sbjct: 1656 MIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYEKYD-STWS 1714
Query: 342 FYCGESQTE--NQRTAIMESLLAAQ 364
Y +S N T + S LA++
Sbjct: 1715 SYVEDSMKNFLNDNTMCVRSFLASE 1739
>sp|Q1RKN3|TLH2_SCHPO ATP-dependent DNA helicase tlh2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=tlh2 PE=2 SV=1
Length = 1919
Score = 118 bits (296), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 109/385 (28%), Positives = 180/385 (46%), Gaps = 31/385 (8%)
Query: 5 LKKYFGYSV-FRPYQK--DVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGK------- 54
L +Y+G FR ++ V ++ + + + V+ TG GKSL + +P L+ K
Sbjct: 1180 LSQYYGLEAKFRSLKQFQSVYFSLLNRMNLITVLPTGGGKSLSFLIPALIEKKRQTPGKV 1239
Query: 55 ---TALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKA 111
LV+ P++SL QD ++ + ++G+ G+ V+ ET L +T E A
Sbjct: 1240 MNMVTLVLVPMMSLRQDMMLRVNEKGLLV-CSGNWTAFKDVRLTLETQLPDLFILTYESA 1298
Query: 112 CIIP-ISFWSKLLKAG-VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTA 169
+ F+ L G + +DEAH + G +R + +L L P L+A
Sbjct: 1299 LTNSGLRFFESLATLGRLARVVIDEAHLLLTSG-AWRTALSRASRLSG--LYAPLHLLSA 1355
Query: 170 TATEKVRIDIINSLKLKNPYV-TIASFDRKNLFYGVKVINRGQSFVD-ELVQEILKSVAG 227
T ++ + + N YV S R+N+FY + + + +D + + K G
Sbjct: 1356 TFPRQLEM-VARQTFCTNFYVLRETSTARENIFYFLHPYDNTEFLLDLRTLMKRTKVFEG 1414
Query: 228 AGSIIVYCMTIKDVEEISKALKQLGVKAGT----YHGQMGSKAREEAHRLF--IRDEIRV 281
G I++C T KDVE I + L Q + A T Y G + + R+ F + R+
Sbjct: 1415 DGRAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRI 1474
Query: 282 MVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD 341
M+AT AFG+GI+ VR V+HYG P + Y QE+GR GRDG ++ L+Y + + +
Sbjct: 1475 MIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYEKYD-STWS 1533
Query: 342 FYCGESQTE--NQRTAIMESLLAAQ 364
Y +S N T + S LA++
Sbjct: 1534 SYVEDSMKNFLNDNTMCVRSFLASE 1558
>sp|Q58083|H669_METJA Probable ATP-dependent RNA helicase MJ0669 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0669 PE=1 SV=1
Length = 367
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 55/92 (59%)
Query: 232 IVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMG 291
+V+C T +D +E++ L+ +G KAG HG + RE+ RLF + +IR+++AT G
Sbjct: 242 LVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRG 301
Query: 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
ID D+ VI+Y P+ ESY GR GR G
Sbjct: 302 IDVNDLNCVINYHLPQNPESYMHRIGRTGRAG 333
>sp|Q53RK8|RH21_ORYSJ DEAD-box ATP-dependent RNA helicase 21 OS=Oryza sativa subsp.
japonica GN=Os03g0708600 PE=2 SV=1
Length = 736
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 92/355 (25%), Positives = 146/355 (41%), Gaps = 56/355 (15%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCY---------QLPPL-----VTGKT 55
GY P Q I +++RD + + TGSGK+ + +LPP+ G
Sbjct: 334 GYKEPSPIQMASIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISEENEAEGPY 393
Query: 56 ALVVSPLISLMQDQVMSLKQRGIN-AEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACII 114
A+V++P L Q +++ + A +LG E F++ + C +
Sbjct: 394 AVVMAPTRELAQ----QIEEETVKFATYLGIKVVSIVGGQSIEEQGFKI-----RQGCEV 444
Query: 115 PISFWSKLLKAGVCLFAV---------DEAHCISEWGHDFRL----------------EY 149
I+ +LL +AV DEA + + G + ++ E
Sbjct: 445 VIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENED 504
Query: 150 KQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYV-TIASFDRKNLFYGVKVIN 208
++LD + F A A E+ + L+NP V TI + + VI
Sbjct: 505 EELDAKTIYRTTYMFSATMPPAVER-----LARKYLRNPVVVTIGTAGKATDLITQNVIM 559
Query: 209 RGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKARE 268
+S +Q+IL + G IV+C T K + +K L + G + T HG + RE
Sbjct: 560 TKESEKMSRLQKILTDL-GDKPAIVFCNTKKSADARAKDLDKAGFRVTTLHGGKSQEQRE 618
Query: 269 EAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
+ F V+VAT G GID PDV HVI+Y P ++++Y GR GR G
Sbjct: 619 TSLDGFRNRRFTVLVATDVAGRGIDIPDVAHVINYEMPSSIDTYTHRIGRTGRAG 673
>sp|A3AVH5|RH13_ORYSJ DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa subsp.
japonica GN=Os04g0510400 PE=2 SV=2
Length = 832
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 63/128 (49%)
Query: 224 SVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMV 283
SV G G I++C +I + +S L+ LG+ T H QM +AR +A F E ++V
Sbjct: 506 SVHGQGRTIIFCTSIAALRHLSSILRVLGINVLTNHAQMQQRARMKAVDRFRESENSILV 565
Query: 284 ATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFY 343
AT F G+D DVR VIHY P + + Y SGR R +A + ++ AK
Sbjct: 566 ATDGFARGMDFDDVRTVIHYQLPHSTDVYIHRSGRTARKSMAGCSIALISPADKAKFYSL 625
Query: 344 CGESQTEN 351
C EN
Sbjct: 626 CKSLSKEN 633
>sp|A2XVF7|RH13_ORYSI DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa subsp.
indica GN=OsI_016050 PE=2 SV=2
Length = 832
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 63/128 (49%)
Query: 224 SVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMV 283
SV G G I++C +I + +S L+ LG+ T H QM +AR +A F E ++V
Sbjct: 506 SVHGQGRTIIFCTSIAALRHLSSILRVLGINVLTNHAQMQQRARMKAVDRFRESENSILV 565
Query: 284 ATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFY 343
AT F G+D DVR VIHY P + + Y SGR R +A + ++ AK
Sbjct: 566 ATDGFARGMDFDDVRTVIHYQLPHSTDVYIHRSGRTARKSMAGCSIALISPADKAKFYSL 625
Query: 344 CGESQTEN 351
C EN
Sbjct: 626 CKSLSKEN 633
>sp|Q9C718|RH20_ARATH DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana
GN=RH20 PE=1 SV=1
Length = 501
Score = 78.2 bits (191), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 90/359 (25%), Positives = 159/359 (44%), Gaps = 42/359 (11%)
Query: 7 KYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV-----------TGKT 55
K G++ P Q ++ RD + + TGSGK+L Y LP +V G
Sbjct: 115 KKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPI 174
Query: 56 ALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSS---------VQTKAETGYFQLLFM 106
LV++P L + ++Q ++F S++ ++ Q + +++
Sbjct: 175 VLVLAPTREL----AVQIQQEA--SKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIA 228
Query: 107 TPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVA 166
TP + + S + L + V +DEA + + G D ++ K + +R
Sbjct: 229 TPGRLIDMMESNNTNLRR--VTYLVLDEADRMLDMGFDPQIR-KIVSHIRPDRQ-----T 280
Query: 167 LTATATEKVRIDIINSLKLKNPY-VTIASFD---RKNLFYGVKVINRGQSFVDELVQEIL 222
L +AT ++ ++ L NPY V I S D + + V VI+ Q + ++LV+ +L
Sbjct: 281 LYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKY-NKLVK-LL 338
Query: 223 KSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVM 282
+ + I+V+ T K ++I++ L+ G A + HG R+ F + +M
Sbjct: 339 EDIMDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIM 398
Query: 283 VATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYY--ARSNFAK 339
AT G+D DV++VI+Y P +LE Y GR GR G + ++ A + FAK
Sbjct: 399 TATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAK 457
>sp|Q4L7W0|Y956_STAHJ Probable DEAD-box ATP-dependent RNA helicase SH0956
OS=Staphylococcus haemolyticus (strain JCSC1435)
GN=SH0956 PE=3 SV=1
Length = 503
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 94/356 (26%), Positives = 149/356 (41%), Gaps = 52/356 (14%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL--VTGKT---A 56
V TL+ G+ P QKD I +E +D L TG+GK+ + +P + V G++ A
Sbjct: 14 VETLE-AMGFKEPTPIQKDSIPYTLEGKDILGQAQTGTGKTGAFGIPLIEKVVGQSGVQA 72
Query: 57 LVVSPLISLMQDQVMSLKQ--RGINAEFL---GSAQTDSSVQTKAETGYFQLLFMTPEKA 111
L+++P L L++ RG N + + G D Q KA Q++ TP
Sbjct: 73 LILAPTRELAMQVAEQLREFSRGQNVQVVTVFGGMPIDR--QIKALKRGPQIVVGTP--G 128
Query: 112 CIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV---ALT 168
+I L G+ +DEA + G +D +R + +P +
Sbjct: 129 RVIDHLNRRTLKTNGIHTLILDEADEMMNMGF--------IDDMRFIMDKIPAEQRQTML 180
Query: 169 ATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSF--VDE---LVQEILK 223
+AT I + +K+P + VK +N S +DE +V+E+ K
Sbjct: 181 FSATMPKAIQTLVQQFMKSPQI-------------VKTMNNEMSDPQIDEYYTIVKELEK 227
Query: 224 --------SVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFI 275
V IV+ T + V+E++ AL G KA HG + R E + F
Sbjct: 228 FDTFTNFLDVHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFK 287
Query: 276 RDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLY 331
D+I ++VAT G+D V HV ++ P+ ESY GR GR G + +
Sbjct: 288 NDQIDILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTF 343
>sp|Q0DM51|RH3_ORYSJ DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Oryza
sativa subsp. japonica GN=Os03g0827700 PE=2 SV=2
Length = 758
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 89/358 (24%), Positives = 154/358 (43%), Gaps = 38/358 (10%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV------TGK 54
+VSTL+K G + P Q+ V+ ++ RD + TG+GK+L + +P + G+
Sbjct: 115 LVSTLEKR-GITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFGIPMIKQLMEEDDGR 173
Query: 55 TA--------LVVSPLISLMQDQVMSLKQRGINAEFLGS----AQTDSSVQTKAETGYFQ 102
+ LV++P L + +K+ +A L + +VQ A +
Sbjct: 174 SVRRGRIPRVLVLAPTRELAKQVEKEIKE---SAPKLSTVCVYGGVSYNVQQNALSRGVD 230
Query: 103 LLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLE--YKQLDKLRTFLL 160
++ TP + II + L V +DEA + G + +E +QL R +L
Sbjct: 231 VVVGTPGR--IIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQLPAERQSML 288
Query: 161 GVPFVALTATATEKVRIDIINSLKLKNPY-VTIASFDRKNLFYGVKV--INRGQSFVDEL 217
+AT + ++ L NP + + + L G+K+ I + +
Sbjct: 289 --------FSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTV 340
Query: 218 VQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRD 277
+ +++ A G IV+ T +D +E+S AL + + HG + RE F +
Sbjct: 341 LSDLITVYAKGGKTIVFTKTKRDADEVSLALTN-SIASEALHGDISQHQRERTLNGFRQG 399
Query: 278 EIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARS 335
+ V+VAT G+D P+V +IHY P E++ SGR GR G A L + S
Sbjct: 400 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNS 457
>sp|P24782|DBP2_SCHPO ATP-dependent RNA helicase dbp2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dbp2 PE=2 SV=2
Length = 550
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 82/349 (23%), Positives = 145/349 (41%), Gaps = 28/349 (8%)
Query: 7 KYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP--------PLVT---GKT 55
K G+ P Q+ + RD + + ATGSGK+L Y LP PL++ G
Sbjct: 138 KQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPI 197
Query: 56 ALVVSPLISLMQDQVMSLKQRGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKAC 112
LV++P L + G ++ + Q + ++ TP +
Sbjct: 198 VLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLL 257
Query: 113 IIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATAT 172
+ S + L + V +DEA + + G + ++ K +D++R V F A
Sbjct: 258 DMLDSNKTNLRR--VTYLVLDEADRMLDMGFEPQIR-KIVDQIRPDRQTVMFSATWPKEV 314
Query: 173 EKVRIDIINSLKLKNPYVTIASFD---RKNLFYGVKVINRG--QSFVDELVQEILKSVAG 227
+++ D +N VT+ S D N+ V+V++ ++ + + ++E+LK
Sbjct: 315 QRLARDYLNDYI----QVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKDRDN 370
Query: 228 AGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMA 287
++++ T + ++I++ L+Q G A HG R+ F + +MVAT
Sbjct: 371 --KVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDV 428
Query: 288 FGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN 336
GID + HV +Y P E Y GR GR G + Y+ N
Sbjct: 429 ASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDN 477
>sp|P25888|RHLE_ECOLI ATP-dependent RNA helicase RhlE OS=Escherichia coli (strain K12)
GN=rhlE PE=1 SV=3
Length = 454
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 84/338 (24%), Positives = 147/338 (43%), Gaps = 45/338 (13%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP---------PLVTGKT---AL 57
GY P Q+ I ++E RD + TG+GK+ + LP P G+ AL
Sbjct: 20 GYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRAL 79
Query: 58 VVSPLISL-------MQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEK 110
+++P L ++D L R + F G + ++ + G +L TP +
Sbjct: 80 ILTPTRELAAQIGENVRDYSKYLNIRSL-VVFGGVSINPQMMKLR---GGVDVLVATPGR 135
Query: 111 ACIIPISFWSKLLKAGVCLFAVDEAHCISEWG--HDFRLEYKQLDKLRTFLLGVPFVALT 168
++ + + + V + +DEA + + G HD R +L R LL +
Sbjct: 136 --LLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLL------FS 187
Query: 169 ATATEKVRIDIINSLKLKNPY-VTIASFDRKNLFYGVKVINRGQSFVDE-LVQEILKSVA 226
AT ++ ++ + L NP + +A R+N + + FVD+ +E+L +
Sbjct: 188 ATFSDDIKA--LAEKLLHNPLEIEVA---RRN--TASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 227 GAGS---IIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMV 283
G G+ ++V+ T +++ L + G+++ HG AR A F +IRV+V
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300
Query: 284 ATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGR 321
AT G+D ++ HV++Y P E Y GR GR
Sbjct: 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGR 338
>sp|Q57742|HELX_METJA Uncharacterized ATP-dependent helicase MJ0294 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0294 PE=3 SV=1
Length = 841
Score = 75.1 bits (183), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 157/358 (43%), Gaps = 52/358 (14%)
Query: 5 LKKYFG--YSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL-------VTGKT 55
+K++F Y F P Q+ I+ I E ++ L+ TGSGK+L L + + K
Sbjct: 24 VKEWFKRKYKTFTPPQRYAIKEIHEGKNVLICSPTGSGKTLSAFLAGINELIKLSMENKL 83
Query: 56 A-----LVVSPLISLMQDQVMSLKQ---------RGINAEF------LGSAQTDSSVQTK 95
L VSPL +L D +LK+ + I E + ++ T SS + +
Sbjct: 84 EDRIYILYVSPLRALNNDIERNLKEPLKEIYDVAKEIGIELDEIRVAVRTSDTTSSQKQR 143
Query: 96 AETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCIS-EWGHDFRLEYKQLDK 154
+L TPE I S L +G+ VDE H ++ + G L ++L++
Sbjct: 144 MLKKPPHILITTPESLAIALNSPKFSQLLSGIKYVIVDEIHALTNKRGVHLSLSLERLNR 203
Query: 155 LRTFLLGVPFVALTATA---TEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQ 211
+ F+ + L+AT TE + + N ++ Y+ S+ ++ +KVI+
Sbjct: 204 IANFIR----IGLSATIHPLTEVAKFLVGNG---RDCYIVDVSYKKE---IEIKVISPVD 253
Query: 212 SFVDELVQEILKS--------VAGAGSIIVYCMTIKDVEEISKALKQLGV-KAGTYHGQM 262
F+ +EI K + + +++ T E ++ LKQLGV K T+H +
Sbjct: 254 DFIYTPSEEISKRLYNLLKKLIEEHKTTLIFTNTRSATERVAFYLKQLGVEKVETHHSSL 313
Query: 263 GSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCG 320
+ R E + EIRV +++ + +G+D + VI G PK++ Q GR G
Sbjct: 314 SREHRLEVEEKLKKGEIRVCISSTSLELGVDIGSIDLVILLGSPKSVSRALQRIGRSG 371
>sp|Q9SZB4|RH43_ARATH Putative DEAD-box ATP-dependent RNA helicase 43 OS=Arabidopsis
thaliana GN=RH43 PE=3 SV=1
Length = 542
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 89/342 (26%), Positives = 144/342 (42%), Gaps = 45/342 (13%)
Query: 16 PYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV--------------TGKTALVVSP 61
P Q + ++ RD + + TGSGK+L + LP ++ G ALV+ P
Sbjct: 122 PIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICP 181
Query: 62 LISLMQDQ-------VMSLKQRGINA--EFLGSAQTDSSVQTKAETGYFQLLFMTPEKAC 112
L + V SL + G L D Q ++ TP +
Sbjct: 182 SRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLK 241
Query: 113 IIPISFWSKLLKAGVC-LFAVDEAHCISEWG--HDFRLEYKQLDKLRTFLLGVPFVALTA 169
I K + C L +DEA + + G D R + R LL +A
Sbjct: 242 DI---LAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLL------FSA 292
Query: 170 TATEKVRIDIINSLKLKNPYVTIASFDRKNL--FYGVKVINRGQSFVDELVQEILKSVAG 227
T K++I ++L +K V + NL V+ + + V L++ + K+
Sbjct: 293 TMPAKIQIFATSAL-VKPVTVNVGRAGAANLDVIQEVEYVKQEAKIV-YLLECLQKTTP- 349
Query: 228 AGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMA 287
++++C DV++I + L GV+A HG + R+ A LF + V+VAT
Sbjct: 350 --PVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDV 407
Query: 288 FGMGIDKPDVRHVIHYGCPKTLESYYQ---ESGRCGRDGIAS 326
G+D PD++HVI+Y P +E+Y +GRCG+ GIA+
Sbjct: 408 ASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIAT 449
>sp|Q5VQL1|RH14_ORYSJ DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp.
japonica GN=Os01g0172200 PE=2 SV=1
Length = 708
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 147/345 (42%), Gaps = 37/345 (10%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV----------TGKTALVV 59
G+S P Q + RD + V TGSGK+L Y +P + G T LV+
Sbjct: 199 GFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIPGFILLKRLQHNSRDGPTVLVL 258
Query: 60 SP---LISLMQDQVMSL-KQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIP 115
SP L + +QD+ + I++ L E G ++ TP + +
Sbjct: 259 SPTRELATQIQDEAKKFGRSSRISSVCLYGGAPKGPQLRDLERGA-DIVVATPGR--LND 315
Query: 116 ISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLE--YKQLDKLRTFLLGVPFVALTATATE 173
I ++ V +DEA + + G + ++ KQ+ R L+ TAT +
Sbjct: 316 ILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLM------FTATWPK 369
Query: 174 KVRIDIINSLKLKNP-YVTIASFDR----KNLFYGVKVINRGQSFVDELVQEILKSVAGA 228
+VR I S L NP V I + D+ K++ V VI + + +IL+S
Sbjct: 370 EVRK--IASDLLSNPVQVNIGNTDQLVANKSITQYVDVITPPEK--SRRLDQILRSQEPG 425
Query: 229 GSIIVYCMTIKDVEEISKAL-KQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMA 287
II++C T + +++++ L +Q G A HG R+ F ++VAT
Sbjct: 426 SKIIIFCSTKRMCDQLARNLARQYGASA--IHGDKSQAERDSVLSEFRSGRCPILVATDV 483
Query: 288 FGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYY 332
G+D D+R V++Y P +E Y GR GR G V + ++
Sbjct: 484 AARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFF 528
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,136,037
Number of Sequences: 539616
Number of extensions: 5168179
Number of successful extensions: 21814
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1356
Number of HSP's successfully gapped in prelim test: 253
Number of HSP's that attempted gapping in prelim test: 19234
Number of HSP's gapped (non-prelim): 2491
length of query: 374
length of database: 191,569,459
effective HSP length: 119
effective length of query: 255
effective length of database: 127,355,155
effective search space: 32475564525
effective search space used: 32475564525
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 62 (28.5 bits)