Query 037567
Match_columns 374
No_of_seqs 157 out of 1647
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 13:35:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037567.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037567hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00614 recQ_fam ATP-depende 100.0 3.3E-60 7.2E-65 435.5 34.9 367 4-374 2-372 (470)
2 PLN03137 ATP-dependent DNA hel 100.0 9.1E-60 2E-64 446.9 31.8 369 3-374 450-842 (1195)
3 PRK11057 ATP-dependent DNA hel 100.0 1.6E-58 3.5E-63 434.7 34.2 365 3-374 15-382 (607)
4 TIGR01389 recQ ATP-dependent D 100.0 2.9E-57 6.3E-62 427.9 34.8 366 2-374 2-371 (591)
5 COG0514 RecQ Superfamily II DN 100.0 1E-56 2.2E-61 403.6 30.0 367 3-374 7-377 (590)
6 KOG0331 ATP-dependent RNA heli 100.0 1.1E-55 2.3E-60 389.7 22.1 333 3-347 104-460 (519)
7 PTZ00110 helicase; Provisional 100.0 4.6E-55 1E-59 405.9 25.8 358 2-373 142-521 (545)
8 PRK04837 ATP-dependent RNA hel 100.0 1.6E-53 3.5E-58 388.0 24.4 332 1-343 19-370 (423)
9 PLN00206 DEAD-box ATP-dependen 100.0 4.1E-53 9E-58 391.9 26.5 333 2-344 133-484 (518)
10 KOG0330 ATP-dependent RNA heli 100.0 2E-53 4.3E-58 353.1 20.0 331 2-345 73-417 (476)
11 PRK11776 ATP-dependent RNA hel 100.0 9.3E-53 2E-57 387.1 26.1 329 2-343 16-357 (460)
12 PRK10590 ATP-dependent RNA hel 100.0 1.3E-52 2.8E-57 384.3 25.5 331 1-344 12-361 (456)
13 PRK01297 ATP-dependent RNA hel 100.0 1.6E-52 3.6E-57 386.3 25.1 326 1-338 98-445 (475)
14 PRK04537 ATP-dependent RNA hel 100.0 5E-52 1.1E-56 386.8 25.7 331 1-343 20-372 (572)
15 PRK11192 ATP-dependent RNA hel 100.0 6.9E-52 1.5E-56 379.2 26.1 331 2-343 13-360 (434)
16 COG0513 SrmB Superfamily II DN 100.0 4.3E-52 9.3E-57 382.4 23.9 330 2-343 41-389 (513)
17 PRK11634 ATP-dependent RNA hel 100.0 3.2E-51 6.9E-56 383.3 28.9 329 2-343 18-360 (629)
18 KOG0328 Predicted ATP-dependen 100.0 3.7E-51 7.9E-56 325.8 20.2 328 9-347 45-385 (400)
19 KOG0345 ATP-dependent RNA heli 100.0 2E-50 4.3E-55 342.8 21.9 331 2-343 18-372 (567)
20 PTZ00424 helicase 45; Provisio 100.0 3E-50 6.4E-55 366.1 24.4 330 2-343 40-382 (401)
21 KOG0336 ATP-dependent RNA heli 100.0 1.2E-50 2.6E-55 338.7 19.7 340 2-352 232-589 (629)
22 KOG0333 U5 snRNP-like RNA heli 100.0 1.5E-49 3.2E-54 341.7 26.0 325 3-338 258-627 (673)
23 KOG0351 ATP-dependent DNA heli 100.0 2.7E-49 6E-54 375.5 28.0 371 2-374 253-634 (941)
24 TIGR03817 DECH_helic helicase/ 100.0 1.1E-48 2.5E-53 373.1 30.1 324 2-334 26-385 (742)
25 KOG0342 ATP-dependent RNA heli 100.0 3.7E-49 8.1E-54 337.2 20.5 332 3-344 95-446 (543)
26 KOG0338 ATP-dependent RNA heli 100.0 1.7E-49 3.6E-54 340.2 18.1 335 2-347 193-545 (691)
27 KOG0352 ATP-dependent DNA heli 100.0 5.5E-48 1.2E-52 324.5 22.5 372 2-373 8-408 (641)
28 KOG0340 ATP-dependent RNA heli 100.0 3E-48 6.4E-53 318.6 20.3 334 1-345 18-371 (442)
29 KOG0335 ATP-dependent RNA heli 100.0 1E-48 2.2E-53 339.7 18.3 326 9-344 92-453 (482)
30 KOG0326 ATP-dependent RNA heli 100.0 1.2E-47 2.6E-52 310.9 13.5 331 9-350 103-444 (459)
31 KOG0348 ATP-dependent RNA heli 100.0 1.4E-46 3.1E-51 324.0 18.6 336 1-343 147-562 (708)
32 KOG0353 ATP-dependent DNA heli 100.0 2E-45 4.2E-50 305.4 22.7 366 3-374 84-501 (695)
33 PRK13767 ATP-dependent helicas 100.0 2.5E-44 5.4E-49 350.0 31.2 309 10-323 29-385 (876)
34 KOG0343 RNA Helicase [RNA proc 100.0 2.3E-45 5.1E-50 317.6 20.8 320 3-336 82-423 (758)
35 PRK02362 ski2-like helicase; P 100.0 6.9E-45 1.5E-49 351.0 26.3 324 2-335 13-397 (737)
36 KOG0346 RNA helicase [RNA proc 100.0 4.4E-45 9.5E-50 307.9 19.3 326 2-338 31-413 (569)
37 KOG0339 ATP-dependent RNA heli 100.0 1.3E-44 2.8E-49 310.1 19.2 339 3-352 236-592 (731)
38 KOG0341 DEAD-box protein abstr 100.0 1.1E-45 2.3E-50 307.2 11.2 321 3-335 183-528 (610)
39 KOG0332 ATP-dependent RNA heli 100.0 9.4E-45 2E-49 299.9 16.6 321 9-336 108-444 (477)
40 KOG0350 DEAD-box ATP-dependent 100.0 1.2E-44 2.7E-49 309.7 16.8 335 5-345 152-550 (620)
41 COG1201 Lhr Lhr-like helicases 100.0 7.4E-43 1.6E-47 325.4 28.3 321 2-331 13-358 (814)
42 TIGR00580 mfd transcription-re 100.0 1.4E-42 3.1E-47 334.3 30.5 311 2-336 441-771 (926)
43 KOG0347 RNA helicase [RNA proc 100.0 4.5E-45 9.8E-50 315.7 10.6 332 2-350 193-585 (731)
44 PRK10917 ATP-dependent DNA hel 100.0 9.5E-42 2.1E-46 324.5 29.4 309 2-333 251-587 (681)
45 PRK00254 ski2-like helicase; P 100.0 2.5E-42 5.4E-47 332.5 25.5 321 2-336 13-389 (720)
46 TIGR00643 recG ATP-dependent D 100.0 9.9E-42 2.1E-46 322.5 28.4 308 3-333 226-564 (630)
47 KOG0334 RNA helicase [RNA proc 100.0 9.4E-43 2E-47 323.5 19.0 337 3-347 378-732 (997)
48 PRK01172 ski2-like helicase; P 100.0 8.7E-42 1.9E-46 327.4 24.6 326 4-344 15-388 (674)
49 PRK10689 transcription-repair 100.0 1.2E-40 2.5E-45 327.8 30.0 310 2-335 590-919 (1147)
50 KOG0344 ATP-dependent RNA heli 100.0 6.9E-42 1.5E-46 299.3 15.9 336 3-344 149-504 (593)
51 KOG4284 DEAD box protein [Tran 100.0 3.8E-41 8.3E-46 296.5 19.7 320 5-335 40-379 (980)
52 PHA02558 uvsW UvsW helicase; P 100.0 1.3E-39 2.9E-44 300.7 27.8 297 12-333 113-450 (501)
53 KOG0327 Translation initiation 100.0 5.8E-41 1.3E-45 279.4 15.9 324 9-344 44-379 (397)
54 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.2E-38 2.5E-43 299.1 31.7 318 3-334 6-390 (844)
55 KOG0337 ATP-dependent RNA heli 100.0 2.3E-40 5E-45 278.0 15.3 327 3-340 34-373 (529)
56 PRK09751 putative ATP-dependen 100.0 2.1E-39 4.5E-44 320.7 24.5 284 33-322 1-371 (1490)
57 COG1204 Superfamily II helicas 100.0 3.4E-39 7.3E-44 304.9 21.3 339 7-356 25-430 (766)
58 COG1202 Superfamily II helicas 100.0 2E-38 4.3E-43 276.3 19.8 318 8-335 211-553 (830)
59 TIGR01587 cas3_core CRISPR-ass 100.0 1.3E-37 2.7E-42 278.7 23.8 300 30-337 1-338 (358)
60 TIGR00603 rad25 DNA repair hel 100.0 1.5E-37 3.3E-42 288.7 24.7 302 13-336 255-608 (732)
61 PHA02653 RNA helicase NPH-II; 100.0 1.5E-36 3.3E-41 283.3 27.7 300 17-337 168-516 (675)
62 COG1111 MPH1 ERCC4-like helica 100.0 1.2E-36 2.6E-41 262.6 24.1 316 10-337 12-483 (542)
63 TIGR03158 cas3_cyano CRISPR-as 100.0 1.6E-36 3.5E-41 268.3 24.6 295 17-320 1-357 (357)
64 PRK11664 ATP-dependent RNA hel 100.0 9.2E-37 2E-41 292.0 23.2 327 15-366 7-367 (812)
65 COG1205 Distinct helicase fami 100.0 3.3E-36 7.1E-41 288.6 25.9 328 3-334 61-421 (851)
66 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2E-36 4.3E-41 289.1 23.7 328 16-366 5-364 (819)
67 KOG0952 DNA/RNA helicase MER3/ 100.0 2.6E-36 5.6E-41 279.1 23.2 342 7-354 104-510 (1230)
68 PRK14701 reverse gyrase; Provi 100.0 2.6E-36 5.6E-41 303.8 23.5 327 3-346 70-467 (1638)
69 PRK09401 reverse gyrase; Revie 100.0 9.6E-36 2.1E-40 293.8 23.9 300 3-321 71-430 (1176)
70 COG1061 SSL2 DNA or RNA helica 100.0 5.8E-35 1.3E-39 264.5 26.5 290 13-322 36-376 (442)
71 PRK12898 secA preprotein trans 100.0 8.2E-35 1.8E-39 267.5 26.5 325 2-336 93-587 (656)
72 TIGR03714 secA2 accessory Sec 100.0 2.7E-35 5.9E-40 273.8 23.1 324 3-336 61-538 (762)
73 PRK09200 preprotein translocas 100.0 7.3E-35 1.6E-39 273.5 24.2 324 2-336 68-542 (790)
74 PRK13766 Hef nuclease; Provisi 100.0 2.9E-34 6.3E-39 280.6 26.8 317 11-339 13-483 (773)
75 TIGR00963 secA preprotein tran 100.0 2.3E-34 4.9E-39 266.0 22.8 323 2-336 46-518 (745)
76 PRK04914 ATP-dependent helicas 100.0 1.4E-32 3E-37 264.3 28.4 318 13-336 152-604 (956)
77 PRK05580 primosome assembly pr 100.0 1.3E-32 2.7E-37 261.2 27.2 322 13-347 144-561 (679)
78 COG1200 RecG RecG-like helicas 100.0 5.4E-32 1.2E-36 243.7 25.5 312 2-336 252-592 (677)
79 KOG0354 DEAD-box like helicase 100.0 9.3E-33 2E-37 252.2 20.4 316 10-334 59-528 (746)
80 COG1197 Mfd Transcription-repa 100.0 3.1E-31 6.6E-36 251.7 26.7 310 2-335 584-913 (1139)
81 TIGR00595 priA primosomal prot 100.0 7.6E-32 1.6E-36 247.1 21.7 292 32-336 1-382 (505)
82 TIGR01054 rgy reverse gyrase. 100.0 1.9E-31 4.1E-36 263.9 25.3 285 4-307 70-409 (1171)
83 PRK11131 ATP-dependent RNA hel 100.0 1.6E-31 3.4E-36 260.7 22.8 325 15-366 76-439 (1294)
84 KOG0329 ATP-dependent RNA heli 100.0 3.8E-33 8.3E-38 220.0 7.6 288 3-336 55-356 (387)
85 KOG0951 RNA helicase BRR2, DEA 100.0 3.9E-31 8.5E-36 248.3 20.7 337 8-351 304-718 (1674)
86 PRK09694 helicase Cas3; Provis 100.0 6.2E-30 1.4E-34 244.6 28.2 309 9-324 282-664 (878)
87 TIGR01967 DEAH_box_HrpA ATP-de 100.0 2.7E-30 5.8E-35 253.0 23.0 326 19-367 73-433 (1283)
88 PRK11448 hsdR type I restricti 100.0 1E-29 2.2E-34 249.9 25.7 305 13-324 413-802 (1123)
89 COG4098 comFA Superfamily II D 100.0 6.5E-29 1.4E-33 204.3 25.7 321 13-372 97-439 (441)
90 PLN03142 Probable chromatin-re 100.0 7.7E-29 1.7E-33 239.5 24.2 307 13-331 169-593 (1033)
91 KOG0947 Cytoplasmic exosomal R 100.0 4.5E-29 9.8E-34 229.1 19.0 314 1-335 286-723 (1248)
92 PRK13104 secA preprotein trans 100.0 2.1E-27 4.6E-32 223.1 26.0 322 3-336 73-588 (896)
93 PRK12904 preprotein translocas 100.0 2.1E-27 4.6E-32 222.8 24.6 323 2-336 71-574 (830)
94 KOG0349 Putative DEAD-box RNA 100.0 1.2E-28 2.6E-33 208.7 14.2 275 53-335 286-615 (725)
95 KOG0948 Nuclear exosomal RNA h 100.0 5.7E-29 1.2E-33 223.2 12.6 320 8-348 125-553 (1041)
96 PRK12906 secA preprotein trans 100.0 1.2E-27 2.7E-32 223.5 21.9 323 2-336 70-554 (796)
97 KOG0950 DNA polymerase theta/e 99.9 4E-27 8.6E-32 217.5 16.2 334 6-347 216-623 (1008)
98 COG4581 Superfamily II RNA hel 99.9 1.9E-26 4.2E-31 219.1 20.7 309 5-334 112-536 (1041)
99 KOG0922 DEAH-box RNA helicase 99.9 3.6E-26 7.9E-31 204.3 21.2 327 15-366 53-418 (674)
100 TIGR00348 hsdR type I site-spe 99.9 3.2E-26 6.9E-31 217.5 22.3 298 14-322 239-634 (667)
101 COG1643 HrpA HrpA-like helicas 99.9 9.4E-26 2E-30 213.0 21.8 336 14-367 51-416 (845)
102 COG1203 CRISPR-associated heli 99.9 1.1E-25 2.4E-30 216.0 21.5 325 14-345 196-560 (733)
103 PRK13107 preprotein translocas 99.9 8E-25 1.7E-29 205.2 26.5 322 3-336 73-592 (908)
104 PRK12899 secA preprotein trans 99.9 4.1E-25 8.8E-30 207.5 24.3 126 209-336 549-682 (970)
105 COG0556 UvrB Helicase subunit 99.9 1.5E-24 3.3E-29 188.8 24.0 165 162-334 387-556 (663)
106 COG1198 PriA Primosomal protei 99.9 4.5E-25 9.8E-30 205.4 21.3 333 13-356 198-624 (730)
107 KOG0385 Chromatin remodeling c 99.9 2.4E-24 5.3E-29 194.3 21.2 307 13-331 167-593 (971)
108 COG4096 HsdR Type I site-speci 99.9 5.4E-25 1.2E-29 201.4 15.0 294 11-322 163-525 (875)
109 KOG0387 Transcription-coupled 99.9 8.1E-24 1.8E-28 191.8 20.5 307 13-331 205-652 (923)
110 KOG1123 RNA polymerase II tran 99.9 3.6E-24 7.8E-29 184.8 16.0 288 13-322 302-634 (776)
111 cd00268 DEADc DEAD-box helicas 99.9 1.2E-24 2.7E-29 179.2 12.1 166 2-176 11-189 (203)
112 TIGR00631 uvrb excinuclease AB 99.9 2.4E-22 5.3E-27 188.9 27.6 124 211-335 425-553 (655)
113 COG1110 Reverse gyrase [DNA re 99.9 9.2E-23 2E-27 190.0 23.9 285 3-307 73-417 (1187)
114 KOG0923 mRNA splicing factor A 99.9 3.6E-23 7.8E-28 184.0 18.6 315 6-337 258-608 (902)
115 PF00270 DEAD: DEAD/DEAH box h 99.9 5.5E-24 1.2E-28 170.2 9.5 155 15-173 1-164 (169)
116 KOG0390 DNA repair protein, SN 99.9 4.9E-22 1.1E-26 184.3 21.8 306 13-331 238-701 (776)
117 KOG0924 mRNA splicing factor A 99.9 1.9E-22 4.2E-27 180.0 18.0 333 9-360 352-720 (1042)
118 PRK12326 preprotein translocas 99.9 1.2E-21 2.5E-26 180.0 23.1 323 2-336 68-548 (764)
119 PRK05298 excinuclease ABC subu 99.9 3.2E-21 7E-26 182.8 25.7 122 212-334 430-556 (652)
120 TIGR01407 dinG_rel DnaQ family 99.9 3.2E-21 7E-26 189.1 25.5 172 163-335 597-814 (850)
121 KOG0949 Predicted helicase, DE 99.9 3.9E-22 8.5E-27 184.3 13.9 155 10-174 509-674 (1330)
122 KOG0920 ATP-dependent RNA heli 99.9 1.7E-21 3.7E-26 183.7 16.8 315 13-342 173-551 (924)
123 PRK13103 secA preprotein trans 99.9 5.7E-20 1.2E-24 173.0 25.4 322 3-336 73-592 (913)
124 PRK12900 secA preprotein trans 99.9 2.1E-20 4.5E-25 176.6 22.3 123 212-336 582-712 (1025)
125 KOG0926 DEAH-box RNA helicase 99.9 4.9E-20 1.1E-24 167.5 21.3 302 19-338 262-707 (1172)
126 PRK07246 bifunctional ATP-depe 99.9 8.7E-20 1.9E-24 176.7 24.6 184 163-349 575-799 (820)
127 KOG0384 Chromodomain-helicase 99.9 1.5E-20 3.2E-25 177.9 18.4 312 12-335 369-811 (1373)
128 KOG0389 SNF2 family DNA-depend 99.9 3.4E-20 7.4E-25 168.3 19.6 315 13-336 399-889 (941)
129 KOG0953 Mitochondrial RNA heli 99.9 2.2E-20 4.7E-25 163.5 17.3 289 29-353 192-494 (700)
130 KOG1000 Chromatin remodeling p 99.8 1.3E-19 2.7E-24 156.7 18.9 306 12-332 197-598 (689)
131 COG4889 Predicted helicase [Ge 99.8 7.5E-21 1.6E-25 174.2 10.8 309 13-324 161-574 (1518)
132 PRK12903 secA preprotein trans 99.8 4.9E-18 1.1E-22 158.6 26.2 322 2-336 68-540 (925)
133 CHL00122 secA preprotein trans 99.8 3E-18 6.4E-23 160.9 23.6 282 2-295 66-491 (870)
134 cd00079 HELICc Helicase superf 99.8 6.6E-19 1.4E-23 134.5 13.9 118 214-331 14-131 (131)
135 PRK08074 bifunctional ATP-depe 99.8 1.8E-17 3.9E-22 163.6 27.4 186 163-348 674-908 (928)
136 KOG0392 SNF2 family DNA-depend 99.8 1.1E-18 2.4E-23 165.0 17.6 306 13-330 975-1447(1549)
137 PF04851 ResIII: Type III rest 99.8 8E-20 1.7E-24 148.2 8.2 152 13-173 3-184 (184)
138 KOG0925 mRNA splicing factor A 99.8 5.2E-18 1.1E-22 146.5 19.4 303 14-337 48-389 (699)
139 KOG4150 Predicted ATP-dependen 99.8 2E-18 4.3E-23 151.8 15.8 325 10-335 283-640 (1034)
140 smart00487 DEXDc DEAD-like hel 99.8 1.3E-18 2.9E-23 143.0 11.3 161 9-177 4-176 (201)
141 TIGR03117 cas_csf4 CRISPR-asso 99.8 9.7E-17 2.1E-21 149.0 24.5 107 227-335 469-616 (636)
142 PF00271 Helicase_C: Helicase 99.8 1.3E-18 2.7E-23 119.5 7.3 78 246-323 1-78 (78)
143 PRK12902 secA preprotein trans 99.8 3.5E-16 7.6E-21 146.9 24.9 132 2-139 75-218 (939)
144 COG1199 DinG Rad3-related DNA 99.8 2.4E-16 5.1E-21 152.1 23.1 169 163-336 405-618 (654)
145 PRK11747 dinG ATP-dependent DN 99.7 1.6E-15 3.5E-20 145.3 28.1 169 164-335 459-674 (697)
146 TIGR00604 rad3 DNA repair heli 99.7 1.1E-15 2.3E-20 147.7 26.9 108 227-335 521-674 (705)
147 KOG0951 RNA helicase BRR2, DEA 99.7 5.3E-17 1.1E-21 154.3 15.2 318 14-354 1144-1513(1674)
148 KOG0391 SNF2 family DNA-depend 99.7 3.4E-16 7.4E-21 147.6 18.7 133 212-344 1260-1394(1958)
149 KOG0386 Chromatin remodeling c 99.7 2.2E-17 4.7E-22 153.9 10.1 311 12-334 393-835 (1157)
150 KOG4439 RNA polymerase II tran 99.7 4.9E-16 1.1E-20 140.0 17.8 119 226-353 744-865 (901)
151 PRK14873 primosome assembly pr 99.7 1.2E-15 2.5E-20 143.8 19.1 295 32-352 164-555 (665)
152 PF02399 Herpes_ori_bp: Origin 99.7 9.4E-15 2E-19 136.1 20.9 291 30-339 51-392 (824)
153 COG0610 Type I site-specific r 99.7 3.6E-15 7.8E-20 146.5 18.6 295 29-333 274-651 (962)
154 cd00046 DEXDc DEAD-like helica 99.7 1.8E-16 3.9E-21 122.8 7.2 136 29-171 1-144 (144)
155 smart00490 HELICc helicase sup 99.7 6.4E-16 1.4E-20 107.4 8.8 81 243-323 2-82 (82)
156 KOG0388 SNF2 family DNA-depend 99.6 2.4E-14 5.1E-19 129.4 16.9 114 216-329 1031-1146(1185)
157 PRK12901 secA preprotein trans 99.6 1.7E-13 3.7E-18 130.5 23.4 124 211-336 611-742 (1112)
158 KOG1015 Transcription regulato 99.6 1.7E-14 3.7E-19 133.9 14.3 141 227-367 1141-1319(1567)
159 KOG1002 Nucleotide excision re 99.6 2.9E-14 6.3E-19 123.9 14.2 102 227-328 637-740 (791)
160 TIGR02562 cas3_yersinia CRISPR 99.6 2.4E-13 5.2E-18 130.1 19.9 91 231-324 759-881 (1110)
161 COG0553 HepA Superfamily II DN 99.5 9.4E-13 2E-17 132.3 16.6 312 12-332 337-817 (866)
162 PF00176 SNF2_N: SNF2 family N 99.5 1.4E-13 3.1E-18 120.6 8.9 158 17-183 1-184 (299)
163 PF07652 Flavi_DEAD: Flaviviru 99.4 4.2E-14 9.1E-19 104.5 3.2 133 28-175 4-140 (148)
164 PF06862 DUF1253: Protein of u 99.4 1.5E-10 3.3E-15 102.9 20.0 243 100-343 131-423 (442)
165 COG0653 SecA Preprotein transl 99.3 2.3E-11 5E-16 114.5 13.9 322 3-336 71-546 (822)
166 KOG1016 Predicted DNA helicase 99.1 2.7E-09 5.9E-14 98.2 15.9 118 227-344 718-856 (1387)
167 KOG2340 Uncharacterized conser 99.1 3.1E-09 6.8E-14 93.9 14.4 116 228-343 552-676 (698)
168 KOG1132 Helicase of the DEAD s 98.9 3.4E-07 7.4E-12 86.2 22.4 68 9-77 18-134 (945)
169 KOG0952 DNA/RNA helicase MER3/ 98.9 5.5E-11 1.2E-15 112.6 -3.3 243 28-279 943-1206(1230)
170 PRK15483 type III restriction- 98.9 1.9E-08 4.1E-13 97.4 12.8 45 278-322 501-545 (986)
171 PF13086 AAA_11: AAA domain; P 98.8 1.8E-08 3.9E-13 84.9 9.0 63 13-75 1-75 (236)
172 PF13307 Helicase_C_2: Helicas 98.8 3.1E-08 6.7E-13 78.2 9.5 107 227-335 8-150 (167)
173 PF07517 SecA_DEAD: SecA DEAD- 98.7 2.7E-08 5.8E-13 83.4 6.6 132 2-139 67-210 (266)
174 KOG0921 Dosage compensation co 98.7 5.5E-08 1.2E-12 91.3 9.0 307 17-335 382-774 (1282)
175 KOG1802 RNA helicase nonsense 98.7 5.8E-08 1.3E-12 88.3 8.5 81 3-84 401-485 (935)
176 PF13872 AAA_34: P-loop contai 98.7 8.7E-08 1.9E-12 80.6 9.0 161 13-175 37-224 (303)
177 COG3587 Restriction endonuclea 98.7 3.6E-07 7.9E-12 85.7 13.5 46 277-322 482-527 (985)
178 smart00488 DEXDc2 DEAD-like he 98.6 6.9E-08 1.5E-12 83.2 6.4 68 8-76 4-84 (289)
179 smart00489 DEXDc3 DEAD-like he 98.6 6.9E-08 1.5E-12 83.2 6.4 68 8-76 4-84 (289)
180 KOG1001 Helicase-like transcri 98.5 1.5E-07 3.1E-12 89.2 5.8 103 229-331 540-644 (674)
181 PF13604 AAA_30: AAA domain; P 98.5 6.3E-07 1.4E-11 72.7 7.9 59 14-72 2-65 (196)
182 KOG1803 DNA helicase [Replicat 98.4 1.2E-06 2.5E-11 79.6 7.6 62 13-74 185-250 (649)
183 TIGR00376 DNA helicase, putati 98.3 5.1E-06 1.1E-10 79.5 10.3 72 13-84 157-232 (637)
184 PF02562 PhoH: PhoH-like prote 98.3 2.4E-06 5.1E-11 68.9 6.5 55 11-65 2-61 (205)
185 KOG1513 Nuclear helicase MOP-3 98.2 1.8E-05 3.9E-10 74.1 11.5 159 12-170 263-453 (1300)
186 smart00492 HELICc3 helicase su 98.2 2.6E-05 5.6E-10 59.4 10.7 94 241-334 4-137 (141)
187 smart00491 HELICc2 helicase su 98.2 2.3E-05 5.1E-10 59.7 10.4 95 240-334 3-138 (142)
188 COG3421 Uncharacterized protei 98.2 7.3E-06 1.6E-10 74.3 8.4 142 33-174 2-168 (812)
189 PF13245 AAA_19: Part of AAA d 98.1 5.5E-06 1.2E-10 55.5 4.3 46 28-73 10-62 (76)
190 TIGR01447 recD exodeoxyribonuc 98.1 2.5E-05 5.4E-10 73.8 9.7 61 15-75 147-215 (586)
191 PF09848 DUF2075: Uncharacteri 98.0 7.6E-06 1.7E-10 73.1 4.7 47 30-76 3-54 (352)
192 KOG1131 RNA polymerase II tran 98.0 5.2E-05 1.1E-09 67.8 9.2 68 6-73 9-87 (755)
193 COG2256 MGS1 ATPase related to 97.9 3.8E-05 8.2E-10 66.9 7.7 104 21-175 38-144 (436)
194 PF13401 AAA_22: AAA domain; P 97.9 4.3E-05 9.4E-10 57.8 6.7 18 28-45 4-21 (131)
195 PRK10875 recD exonuclease V su 97.9 4.1E-05 9E-10 72.5 7.9 72 4-75 142-221 (615)
196 KOG1805 DNA replication helica 97.9 6.3E-05 1.4E-09 72.2 8.8 123 11-139 667-809 (1100)
197 TIGR01448 recD_rel helicase, p 97.9 8.8E-05 1.9E-09 72.3 9.7 62 9-71 320-386 (720)
198 PRK10536 hypothetical protein; 97.7 0.00015 3.3E-09 60.2 7.8 54 10-63 56-114 (262)
199 COG1875 NYN ribonuclease and A 97.6 0.00014 3E-09 62.6 6.0 61 6-66 221-289 (436)
200 KOG0298 DEAD box-containing he 97.5 6.8E-05 1.5E-09 73.9 3.6 138 28-174 374-553 (1394)
201 KOG0383 Predicted helicase [Ge 97.5 7.4E-05 1.6E-09 70.5 3.6 65 226-291 629-696 (696)
202 PRK08181 transposase; Validate 97.5 0.00097 2.1E-08 56.7 9.7 56 14-70 88-150 (269)
203 PRK06526 transposase; Provisio 97.5 0.00048 1.1E-08 58.2 7.8 41 27-68 97-140 (254)
204 PF13871 Helicase_C_4: Helicas 97.5 0.00039 8.4E-09 58.7 6.9 60 269-328 52-119 (278)
205 PRK04296 thymidine kinase; Pro 97.5 7.5E-05 1.6E-09 60.4 2.6 32 30-61 4-38 (190)
206 PF12340 DUF3638: Protein of u 97.5 0.00028 6E-09 57.6 5.7 62 13-75 23-91 (229)
207 PF00448 SRP54: SRP54-type pro 97.5 0.0019 4.2E-08 52.3 10.6 126 31-182 4-136 (196)
208 PRK08727 hypothetical protein; 97.4 0.00054 1.2E-08 57.4 7.6 32 29-60 42-76 (233)
209 cd00009 AAA The AAA+ (ATPases 97.4 0.0011 2.4E-08 50.9 8.8 35 28-62 19-56 (151)
210 KOG0739 AAA+-type ATPase [Post 97.4 0.0022 4.8E-08 53.8 10.5 117 23-178 156-284 (439)
211 PF00580 UvrD-helicase: UvrD/R 97.4 0.00018 3.9E-09 63.4 4.4 61 14-76 1-68 (315)
212 KOG2028 ATPase related to the 97.4 0.00089 1.9E-08 57.8 7.8 47 29-75 163-212 (554)
213 TIGR02768 TraA_Ti Ti-type conj 97.3 0.00053 1.1E-08 67.2 7.3 58 13-70 352-413 (744)
214 PHA03368 DNA packaging termina 97.3 0.0024 5.2E-08 60.0 10.6 157 3-184 233-403 (738)
215 PF05496 RuvB_N: Holliday junc 97.3 0.00017 3.8E-09 58.4 2.7 21 30-50 52-72 (233)
216 PRK13826 Dtr system oriT relax 97.3 0.0032 7E-08 63.5 11.7 59 13-71 381-443 (1102)
217 KOG1133 Helicase of the DEAD s 97.3 0.011 2.3E-07 55.5 14.0 116 217-337 620-782 (821)
218 TIGR02760 TraI_TIGR conjugativ 97.2 0.019 4.2E-07 62.3 17.4 207 13-250 429-648 (1960)
219 PRK07952 DNA replication prote 97.2 0.0054 1.2E-07 51.4 10.6 55 16-71 79-144 (244)
220 PF00004 AAA: ATPase family as 97.2 0.0015 3.2E-08 49.3 6.7 32 31-62 1-32 (132)
221 PRK12377 putative replication 97.2 0.0042 9.1E-08 52.2 9.8 43 29-72 102-147 (248)
222 PF05970 PIF1: PIF1-like helic 97.1 0.0012 2.7E-08 59.2 6.8 57 13-69 1-66 (364)
223 PF05127 Helicase_RecD: Helica 97.1 0.00071 1.5E-08 53.2 4.5 118 32-174 1-126 (177)
224 PRK13342 recombination factor 97.1 0.002 4.3E-08 59.0 7.8 19 29-47 37-55 (413)
225 PRK13889 conjugal transfer rel 97.1 0.0011 2.4E-08 66.2 6.5 58 13-70 346-407 (988)
226 PRK06835 DNA replication prote 97.1 0.0067 1.5E-07 53.3 10.7 42 28-70 183-227 (329)
227 KOG0729 26S proteasome regulat 97.0 0.017 3.8E-07 47.8 11.8 43 28-71 211-253 (435)
228 smart00382 AAA ATPases associa 97.0 0.00059 1.3E-08 52.0 3.4 40 28-67 2-44 (148)
229 KOG0738 AAA+-type ATPase [Post 97.0 0.0037 8E-08 54.5 8.3 73 29-140 246-318 (491)
230 KOG0989 Replication factor C, 97.0 0.00046 1E-08 58.1 2.8 34 17-50 40-79 (346)
231 PF00308 Bac_DnaA: Bacterial d 97.0 0.0044 9.5E-08 51.3 8.4 103 30-174 36-143 (219)
232 PRK05642 DNA replication initi 97.0 0.003 6.4E-08 53.0 7.5 33 29-61 46-81 (234)
233 cd01124 KaiC KaiC is a circadi 97.0 0.0092 2E-07 48.1 10.1 48 31-79 2-52 (187)
234 PRK06893 DNA replication initi 97.0 0.0025 5.4E-08 53.3 6.7 49 125-175 90-138 (229)
235 PRK05707 DNA polymerase III su 97.0 0.0034 7.3E-08 55.3 7.8 33 13-45 3-39 (328)
236 PF05621 TniB: Bacterial TniB 97.0 0.0028 6E-08 54.0 6.9 49 121-171 140-189 (302)
237 COG1484 DnaC DNA replication p 96.9 0.0057 1.2E-07 51.8 8.7 65 9-74 79-153 (254)
238 COG1419 FlhF Flagellar GTP-bin 96.9 0.018 3.8E-07 51.2 11.7 130 28-189 203-341 (407)
239 PF01695 IstB_IS21: IstB-like 96.9 0.0013 2.9E-08 52.4 4.5 60 9-69 22-90 (178)
240 PRK14974 cell division protein 96.9 0.021 4.5E-07 50.3 12.2 121 30-176 142-269 (336)
241 PRK13341 recombination factor 96.9 0.0058 1.2E-07 59.5 9.4 39 126-173 109-147 (725)
242 PHA03333 putative ATPase subun 96.9 0.0085 1.8E-07 56.7 9.9 148 25-184 184-345 (752)
243 PRK12723 flagellar biosynthesi 96.9 0.012 2.6E-07 52.8 10.5 124 29-184 175-310 (388)
244 PRK08084 DNA replication initi 96.9 0.0051 1.1E-07 51.6 7.8 16 29-44 46-61 (235)
245 PRK08116 hypothetical protein; 96.9 0.014 3E-07 49.9 10.5 43 30-73 116-161 (268)
246 PRK12422 chromosomal replicati 96.8 0.0082 1.8E-07 55.2 9.1 43 29-72 142-187 (445)
247 PRK14956 DNA polymerase III su 96.8 0.0065 1.4E-07 55.6 8.3 16 31-46 43-58 (484)
248 PRK00149 dnaA chromosomal repl 96.8 0.0073 1.6E-07 56.1 8.7 44 29-73 149-197 (450)
249 cd01120 RecA-like_NTPases RecA 96.8 0.0075 1.6E-07 47.3 7.8 35 31-65 2-39 (165)
250 PHA02533 17 large terminase pr 96.8 0.0071 1.5E-07 56.8 8.5 63 13-75 59-126 (534)
251 TIGR01075 uvrD DNA helicase II 96.7 0.0019 4E-08 63.6 4.9 63 12-76 3-72 (715)
252 PF06745 KaiC: KaiC; InterPro 96.7 0.0018 4E-08 54.0 4.1 98 28-138 19-127 (226)
253 PRK10917 ATP-dependent DNA hel 96.7 0.013 2.8E-07 57.3 10.3 90 212-301 294-388 (681)
254 PRK11889 flhF flagellar biosyn 96.7 0.0084 1.8E-07 53.3 7.9 126 29-184 242-375 (436)
255 PRK06921 hypothetical protein; 96.7 0.018 4E-07 49.1 9.8 41 28-69 117-161 (266)
256 TIGR00596 rad1 DNA repair prot 96.6 0.0076 1.6E-07 59.3 8.2 41 210-250 271-317 (814)
257 PF03354 Terminase_1: Phage Te 96.6 0.0052 1.1E-07 57.4 6.8 61 16-76 1-77 (477)
258 PRK11773 uvrD DNA-dependent he 96.6 0.0025 5.4E-08 62.7 4.8 63 12-76 8-77 (721)
259 PF13173 AAA_14: AAA domain 96.6 0.0096 2.1E-07 44.7 6.7 40 126-173 61-100 (128)
260 COG1222 RPT1 ATP-dependent 26S 96.5 0.02 4.3E-07 49.7 9.0 40 28-68 185-224 (406)
261 COG1197 Mfd Transcription-repa 96.5 0.042 9.1E-07 55.1 12.2 142 211-360 626-800 (1139)
262 COG4626 Phage terminase-like p 96.5 0.011 2.4E-07 54.3 7.7 146 13-169 61-223 (546)
263 TIGR02881 spore_V_K stage V sp 96.5 0.012 2.7E-07 50.2 7.7 17 29-45 43-59 (261)
264 PRK14088 dnaA chromosomal repl 96.5 0.022 4.9E-07 52.5 9.8 44 29-73 131-179 (440)
265 PRK13709 conjugal transfer nic 96.5 0.044 9.6E-07 58.3 12.8 58 13-70 967-1033(1747)
266 TIGR00643 recG ATP-dependent D 96.5 0.022 4.7E-07 55.3 10.1 88 214-301 270-362 (630)
267 PF05876 Terminase_GpA: Phage 96.5 0.021 4.6E-07 54.2 9.8 160 13-182 16-190 (557)
268 PRK14087 dnaA chromosomal repl 96.4 0.016 3.4E-07 53.6 8.5 45 29-74 142-191 (450)
269 PRK06871 DNA polymerase III su 96.4 0.014 3E-07 51.1 7.7 32 14-45 3-41 (325)
270 TIGR00362 DnaA chromosomal rep 96.4 0.017 3.6E-07 52.9 8.6 42 30-72 138-184 (405)
271 PRK08533 flagellar accessory p 96.4 0.042 9E-07 45.9 10.2 51 27-78 23-76 (230)
272 PLN03025 replication factor C 96.4 0.011 2.5E-07 52.1 7.2 42 126-173 99-140 (319)
273 TIGR03420 DnaA_homol_Hda DnaA 96.4 0.015 3.2E-07 48.5 7.6 18 28-45 38-55 (226)
274 TIGR01074 rep ATP-dependent DN 96.4 0.0054 1.2E-07 60.1 5.5 61 14-76 2-69 (664)
275 PRK04195 replication factor C 96.4 0.012 2.6E-07 55.1 7.5 32 28-59 39-70 (482)
276 CHL00176 ftsH cell division pr 96.4 0.039 8.4E-07 53.1 11.0 31 29-59 217-247 (638)
277 PRK09183 transposase/IS protei 96.3 0.015 3.2E-07 49.5 7.2 44 25-69 99-145 (259)
278 KOG0734 AAA+-type ATPase conta 96.3 0.032 6.9E-07 51.0 9.3 73 121-193 391-469 (752)
279 PRK08769 DNA polymerase III su 96.3 0.013 2.9E-07 51.2 6.8 35 11-45 2-43 (319)
280 PF01443 Viral_helicase1: Vira 96.3 0.0034 7.3E-08 52.7 3.1 15 31-45 1-15 (234)
281 TIGR02760 TraI_TIGR conjugativ 96.3 0.0091 2E-07 64.7 6.9 59 12-70 1018-1085(1960)
282 PRK06067 flagellar accessory p 96.3 0.06 1.3E-06 45.2 10.6 59 21-80 13-79 (234)
283 PRK05580 primosome assembly pr 96.3 0.045 9.8E-07 53.5 11.0 85 218-303 180-265 (679)
284 TIGR03877 thermo_KaiC_1 KaiC d 96.3 0.0078 1.7E-07 50.6 5.1 59 20-79 8-74 (237)
285 KOG1133 Helicase of the DEAD s 96.3 0.0034 7.3E-08 58.6 3.0 36 13-48 15-54 (821)
286 PF02456 Adeno_IVa2: Adenoviru 96.2 0.0059 1.3E-07 51.6 4.2 36 31-66 90-130 (369)
287 PRK10919 ATP-dependent DNA hel 96.2 0.0058 1.3E-07 59.6 4.8 62 13-76 2-70 (672)
288 PRK14964 DNA polymerase III su 96.2 0.018 3.9E-07 53.3 7.6 19 29-47 36-54 (491)
289 PRK07993 DNA polymerase III su 96.2 0.017 3.8E-07 51.0 7.3 33 13-45 2-41 (334)
290 TIGR00580 mfd transcription-re 96.2 0.037 7.9E-07 55.7 10.2 90 212-301 484-578 (926)
291 PRK07003 DNA polymerase III su 96.2 0.011 2.5E-07 56.8 6.4 42 125-172 118-159 (830)
292 PTZ00454 26S protease regulato 96.2 0.048 1E-06 49.5 10.1 33 28-60 179-211 (398)
293 COG1223 Predicted ATPase (AAA+ 96.2 0.045 9.8E-07 45.4 8.9 42 28-70 151-192 (368)
294 PRK05703 flhF flagellar biosyn 96.2 0.074 1.6E-06 48.7 11.5 126 28-185 221-356 (424)
295 TIGR00595 priA primosomal prot 96.2 0.046 1E-06 51.4 10.3 81 221-302 18-99 (505)
296 PRK06620 hypothetical protein; 96.2 0.015 3.3E-07 47.9 6.3 17 29-45 45-61 (214)
297 PRK04328 hypothetical protein; 96.2 0.012 2.6E-07 49.8 5.9 58 21-79 11-76 (249)
298 PHA02544 44 clamp loader, smal 96.2 0.016 3.5E-07 51.2 6.9 13 126-138 100-112 (316)
299 PRK14712 conjugal transfer nic 96.2 0.016 3.4E-07 60.7 7.6 58 13-70 835-901 (1623)
300 PRK07764 DNA polymerase III su 96.2 0.02 4.3E-07 56.7 7.9 16 125-140 119-134 (824)
301 PRK14722 flhF flagellar biosyn 96.1 0.039 8.5E-07 49.2 9.1 124 28-183 137-269 (374)
302 PHA03372 DNA packaging termina 96.1 0.057 1.2E-06 50.5 10.3 156 2-183 180-349 (668)
303 PRK14962 DNA polymerase III su 96.1 0.015 3.2E-07 54.0 6.7 16 31-46 39-54 (472)
304 PRK14958 DNA polymerase III su 96.1 0.026 5.5E-07 53.0 8.3 17 30-46 40-56 (509)
305 PRK06964 DNA polymerase III su 96.1 0.019 4.1E-07 50.7 7.0 32 14-45 2-38 (342)
306 PRK12323 DNA polymerase III su 96.1 0.012 2.6E-07 55.8 5.9 16 125-140 123-138 (700)
307 PRK14949 DNA polymerase III su 96.1 0.015 3.2E-07 57.1 6.7 16 31-46 41-56 (944)
308 PRK14960 DNA polymerase III su 96.1 0.015 3.3E-07 55.2 6.6 42 125-172 117-158 (702)
309 TIGR02639 ClpA ATP-dependent C 96.1 0.025 5.3E-07 55.9 8.3 18 28-45 203-220 (731)
310 PF13177 DNA_pol3_delta2: DNA 96.1 0.11 2.3E-06 40.8 10.3 50 125-180 101-150 (162)
311 COG0464 SpoVK ATPases of the A 96.1 0.033 7.1E-07 52.5 8.8 45 29-74 277-321 (494)
312 PRK14086 dnaA chromosomal repl 96.0 0.043 9.2E-07 52.0 9.0 43 30-73 316-363 (617)
313 PRK05896 DNA polymerase III su 96.0 0.034 7.3E-07 52.6 8.3 17 30-46 40-56 (605)
314 PRK05973 replicative DNA helic 96.0 0.05 1.1E-06 45.3 8.4 55 24-79 60-117 (237)
315 PRK08903 DnaA regulatory inact 95.9 0.025 5.3E-07 47.3 6.7 17 28-44 42-58 (227)
316 TIGR03878 thermo_KaiC_2 KaiC d 95.9 0.034 7.3E-07 47.4 7.5 52 28-79 36-93 (259)
317 PRK07940 DNA polymerase III su 95.9 0.087 1.9E-06 47.7 10.2 50 125-180 116-165 (394)
318 PRK14873 primosome assembly pr 95.9 0.085 1.9E-06 51.1 10.7 89 212-301 172-262 (665)
319 TIGR01243 CDC48 AAA family ATP 95.9 0.038 8.3E-07 54.7 8.5 33 29-61 488-520 (733)
320 COG0593 DnaA ATPase involved i 95.8 0.062 1.4E-06 48.3 8.9 46 126-173 175-220 (408)
321 PRK03992 proteasome-activating 95.8 0.09 2E-06 47.8 10.2 19 29-47 166-184 (389)
322 PRK14961 DNA polymerase III su 95.7 0.011 2.3E-07 53.3 3.9 30 17-46 20-56 (363)
323 PRK11034 clpA ATP-dependent Cl 95.7 0.054 1.2E-06 53.3 8.9 18 28-45 207-224 (758)
324 TIGR01241 FtsH_fam ATP-depende 95.7 0.062 1.3E-06 50.6 9.1 18 29-46 89-106 (495)
325 PRK11823 DNA repair protein Ra 95.7 0.086 1.9E-06 48.7 9.7 88 28-140 80-170 (446)
326 cd01126 TraG_VirD4 The TraG/Tr 95.7 0.018 4E-07 52.3 5.4 56 30-85 1-57 (384)
327 PRK07994 DNA polymerase III su 95.7 0.021 4.6E-07 54.6 5.9 16 125-140 118-133 (647)
328 PRK14952 DNA polymerase III su 95.7 0.053 1.2E-06 51.6 8.3 16 125-140 117-132 (584)
329 PRK11054 helD DNA helicase IV; 95.7 0.017 3.7E-07 56.1 5.1 62 12-75 195-263 (684)
330 CHL00181 cbbX CbbX; Provisiona 95.6 0.067 1.5E-06 46.3 8.2 18 29-46 60-77 (287)
331 KOG0991 Replication factor C, 95.6 0.003 6.5E-08 51.2 -0.2 18 29-46 49-66 (333)
332 PF10593 Z1: Z1 domain; Inter 95.6 0.025 5.4E-07 47.3 5.2 104 252-366 110-218 (239)
333 cd01121 Sms Sms (bacterial rad 95.6 0.092 2E-06 47.1 9.1 87 29-140 83-172 (372)
334 TIGR02012 tigrfam_recA protein 95.5 0.038 8.2E-07 48.3 6.3 97 20-139 41-146 (321)
335 COG4962 CpaF Flp pilus assembl 95.5 0.029 6.4E-07 48.6 5.4 61 7-67 151-214 (355)
336 TIGR00064 ftsY signal recognit 95.5 0.42 9E-06 41.0 12.5 49 30-78 74-128 (272)
337 PRK12402 replication factor C 95.5 0.038 8.3E-07 49.2 6.6 16 30-45 38-53 (337)
338 KOG0733 Nuclear AAA ATPase (VC 95.5 0.061 1.3E-06 50.1 7.7 30 28-57 223-252 (802)
339 KOG0733 Nuclear AAA ATPase (VC 95.5 0.089 1.9E-06 49.1 8.7 109 28-175 545-659 (802)
340 PRK06090 DNA polymerase III su 95.5 0.066 1.4E-06 46.8 7.6 33 13-45 3-42 (319)
341 PRK10416 signal recognition pa 95.5 0.24 5.1E-06 43.6 11.0 125 30-177 116-250 (318)
342 TIGR02655 circ_KaiC circadian 95.3 0.032 7E-07 52.2 5.4 108 20-140 250-367 (484)
343 cd00984 DnaB_C DnaB helicase C 95.3 0.099 2.1E-06 44.1 8.0 35 27-61 12-50 (242)
344 PRK06645 DNA polymerase III su 95.3 0.04 8.7E-07 51.4 5.9 30 17-46 25-61 (507)
345 PRK09354 recA recombinase A; P 95.2 0.026 5.7E-07 49.7 4.4 97 20-139 46-151 (349)
346 cd00983 recA RecA is a bacter 95.2 0.023 5E-07 49.6 3.9 97 20-139 41-146 (325)
347 COG0467 RAD55 RecA-superfamily 95.2 0.025 5.4E-07 48.3 4.1 54 27-81 22-78 (260)
348 PRK12727 flagellar biosynthesi 95.2 0.24 5.1E-06 46.2 10.4 55 125-183 427-481 (559)
349 cd01122 GP4d_helicase GP4d_hel 95.2 0.12 2.7E-06 44.4 8.4 37 25-61 27-67 (271)
350 PRK09111 DNA polymerase III su 95.2 0.074 1.6E-06 50.9 7.5 17 30-46 48-64 (598)
351 PRK14957 DNA polymerase III su 95.1 0.1 2.2E-06 49.2 8.2 16 31-46 41-56 (546)
352 PTZ00361 26 proteosome regulat 95.1 0.11 2.4E-06 47.7 8.2 20 28-47 217-236 (438)
353 COG1435 Tdk Thymidine kinase [ 95.1 0.21 4.6E-06 39.7 8.6 34 30-63 6-42 (201)
354 PRK08691 DNA polymerase III su 95.1 0.11 2.5E-06 49.9 8.5 17 30-46 40-56 (709)
355 PRK10689 transcription-repair 95.1 0.17 3.7E-06 52.4 10.3 79 223-301 644-727 (1147)
356 PRK14951 DNA polymerase III su 95.1 0.062 1.3E-06 51.4 6.8 16 31-46 41-56 (618)
357 PRK07133 DNA polymerase III su 95.1 0.079 1.7E-06 51.4 7.4 17 30-46 42-58 (725)
358 PRK14955 DNA polymerase III su 95.1 0.096 2.1E-06 47.8 7.7 17 30-46 40-56 (397)
359 TIGR01242 26Sp45 26S proteasom 95.0 0.2 4.4E-06 45.1 9.7 19 29-47 157-175 (364)
360 PRK00771 signal recognition pa 95.0 0.24 5.2E-06 45.5 10.1 50 30-79 97-152 (437)
361 PRK12724 flagellar biosynthesi 95.0 0.21 4.5E-06 45.2 9.5 57 124-184 297-357 (432)
362 COG1200 RecG RecG-like helicas 95.0 0.21 4.5E-06 47.4 9.7 87 215-301 298-389 (677)
363 CHL00206 ycf2 Ycf2; Provisiona 95.0 0.11 2.4E-06 55.1 8.6 39 28-67 1630-1668(2281)
364 TIGR03015 pepcterm_ATPase puta 95.0 0.031 6.7E-07 48.0 4.1 31 16-46 26-61 (269)
365 COG1198 PriA Primosomal protei 94.9 0.11 2.5E-06 50.3 8.0 89 212-301 229-318 (730)
366 CHL00195 ycf46 Ycf46; Provisio 94.9 0.17 3.8E-06 47.1 9.0 33 28-60 259-291 (489)
367 PRK06731 flhF flagellar biosyn 94.9 0.14 3.1E-06 43.6 7.8 126 29-184 76-209 (270)
368 COG1219 ClpX ATP-dependent pro 94.9 0.013 2.9E-07 49.9 1.6 19 28-46 97-115 (408)
369 KOG0737 AAA+-type ATPase [Post 94.9 0.092 2E-06 45.9 6.6 27 29-55 128-154 (386)
370 TIGR01073 pcrA ATP-dependent D 94.9 0.036 7.8E-07 54.9 4.8 63 12-76 3-72 (726)
371 PRK13833 conjugal transfer pro 94.9 0.042 9.1E-07 48.1 4.6 53 13-65 128-186 (323)
372 PF02534 T4SS-DNA_transf: Type 94.8 0.031 6.7E-07 52.4 4.0 54 30-83 46-100 (469)
373 PRK13897 type IV secretion sys 94.8 0.043 9.3E-07 52.4 4.9 56 29-84 159-215 (606)
374 PRK09112 DNA polymerase III su 94.8 0.18 4E-06 44.9 8.6 16 125-140 140-155 (351)
375 KOG0740 AAA+-type ATPase [Post 94.8 0.059 1.3E-06 48.5 5.4 41 29-70 187-227 (428)
376 COG0470 HolB ATPase involved i 94.8 0.051 1.1E-06 48.1 5.2 40 125-170 108-147 (325)
377 COG1110 Reverse gyrase [DNA re 94.7 0.091 2E-06 51.9 6.8 61 227-287 124-190 (1187)
378 PRK14963 DNA polymerase III su 94.7 0.088 1.9E-06 49.4 6.7 16 31-46 39-54 (504)
379 PRK10865 protein disaggregatio 94.7 0.17 3.8E-06 50.8 9.1 18 28-45 199-216 (857)
380 PRK14959 DNA polymerase III su 94.7 0.087 1.9E-06 50.2 6.6 17 30-46 40-56 (624)
381 TIGR03689 pup_AAA proteasome A 94.7 0.057 1.2E-06 50.3 5.2 18 28-45 216-233 (512)
382 PRK09087 hypothetical protein; 94.7 0.11 2.4E-06 43.2 6.5 16 30-45 46-61 (226)
383 PRK08699 DNA polymerase III su 94.7 0.33 7.1E-06 42.9 9.7 32 14-45 2-38 (325)
384 TIGR01547 phage_term_2 phage t 94.6 0.098 2.1E-06 47.8 6.5 129 31-175 4-144 (396)
385 PRK05563 DNA polymerase III su 94.5 0.067 1.5E-06 50.9 5.5 17 30-46 40-56 (559)
386 KOG0736 Peroxisome assembly fa 94.5 0.56 1.2E-05 45.3 11.2 56 121-176 759-824 (953)
387 CHL00095 clpC Clp protease ATP 94.5 0.22 4.7E-06 50.1 9.2 18 28-45 200-217 (821)
388 PF00265 TK: Thymidine kinase; 94.5 0.21 4.6E-06 39.6 7.4 33 31-63 4-39 (176)
389 PRK10867 signal recognition pa 94.5 0.18 3.9E-06 46.1 7.8 52 31-82 103-161 (433)
390 PRK14965 DNA polymerase III su 94.4 0.14 3.1E-06 49.0 7.5 17 30-46 40-56 (576)
391 PRK13851 type IV secretion sys 94.4 0.057 1.2E-06 47.8 4.5 40 26-65 160-201 (344)
392 TIGR01243 CDC48 AAA family ATP 94.4 0.16 3.5E-06 50.4 8.1 18 28-45 212-229 (733)
393 TIGR00635 ruvB Holliday juncti 94.4 0.1 2.2E-06 45.8 6.1 17 29-45 31-47 (305)
394 KOG0298 DEAD box-containing he 94.4 0.062 1.3E-06 54.1 4.9 101 226-331 1219-1320(1394)
395 PRK07471 DNA polymerase III su 94.4 0.11 2.3E-06 46.7 6.1 29 17-45 23-58 (365)
396 PF14617 CMS1: U3-containing 9 94.4 0.026 5.6E-07 47.2 2.1 83 53-137 126-212 (252)
397 COG2804 PulE Type II secretory 94.3 0.044 9.6E-07 50.0 3.6 32 14-45 242-275 (500)
398 KOG1807 Helicases [Replication 94.2 0.098 2.1E-06 49.9 5.7 62 14-75 379-449 (1025)
399 PRK00080 ruvB Holliday junctio 94.2 0.059 1.3E-06 47.8 4.2 18 29-46 52-69 (328)
400 PRK13894 conjugal transfer ATP 94.2 0.069 1.5E-06 46.9 4.4 52 14-65 133-190 (319)
401 cd03115 SRP The signal recogni 94.2 0.21 4.6E-06 39.6 6.9 30 31-60 3-35 (173)
402 PRK14969 DNA polymerase III su 94.1 0.12 2.5E-06 49.0 6.1 17 30-46 40-56 (527)
403 TIGR02785 addA_Gpos recombinat 94.1 0.075 1.6E-06 55.7 5.3 61 13-75 1-67 (1232)
404 TIGR02640 gas_vesic_GvpN gas v 94.1 0.057 1.2E-06 46.1 3.7 40 20-59 13-52 (262)
405 COG3973 Superfamily I DNA and 94.1 0.12 2.5E-06 48.3 5.7 52 28-79 226-286 (747)
406 COG1444 Predicted P-loop ATPas 94.0 0.41 8.9E-06 46.5 9.4 133 15-174 213-359 (758)
407 PRK06995 flhF flagellar biosyn 94.0 0.29 6.2E-06 45.4 8.2 19 28-46 256-274 (484)
408 KOG2543 Origin recognition com 94.0 0.23 4.9E-06 43.8 7.0 140 13-175 9-162 (438)
409 PRK08058 DNA polymerase III su 94.0 0.5 1.1E-05 41.9 9.5 40 125-170 109-148 (329)
410 TIGR02782 TrbB_P P-type conjug 93.9 0.12 2.5E-06 45.1 5.3 52 14-65 117-174 (299)
411 PRK12726 flagellar biosynthesi 93.9 0.27 5.9E-06 43.9 7.5 52 28-79 206-263 (407)
412 COG1474 CDC6 Cdc6-related prot 93.9 0.52 1.1E-05 42.3 9.5 18 29-46 43-60 (366)
413 TIGR03880 KaiC_arch_3 KaiC dom 93.9 0.5 1.1E-05 39.3 8.9 51 28-79 16-69 (224)
414 PRK14954 DNA polymerase III su 93.9 0.28 6.1E-06 47.1 8.2 17 30-46 40-56 (620)
415 PRK14950 DNA polymerase III su 93.9 0.14 3E-06 49.3 6.1 17 30-46 40-56 (585)
416 PF08423 Rad51: Rad51; InterP 93.8 0.065 1.4E-06 45.5 3.5 107 20-139 25-146 (256)
417 PRK13900 type IV secretion sys 93.8 0.068 1.5E-06 47.2 3.7 40 26-65 158-199 (332)
418 PRK10733 hflB ATP-dependent me 93.8 0.32 7E-06 47.4 8.5 33 29-61 186-218 (644)
419 PTZ00112 origin recognition co 93.7 0.22 4.8E-06 49.1 7.1 14 32-45 785-798 (1164)
420 KOG0730 AAA+-type ATPase [Post 93.7 0.32 7E-06 45.9 7.9 110 28-176 468-583 (693)
421 KOG0742 AAA+-type ATPase [Post 93.7 0.3 6.5E-06 43.5 7.2 18 29-46 385-402 (630)
422 PHA00350 putative assembly pro 93.7 0.66 1.4E-05 41.8 9.6 16 31-46 4-19 (399)
423 PRK13850 type IV secretion sys 93.6 0.1 2.2E-06 50.5 4.8 56 29-84 140-196 (670)
424 TIGR03346 chaperone_ClpB ATP-d 93.6 0.43 9.4E-06 48.2 9.4 18 28-45 194-211 (852)
425 TIGR00708 cobA cob(I)alamin ad 93.6 0.3 6.5E-06 38.4 6.5 50 123-175 94-143 (173)
426 TIGR00678 holB DNA polymerase 93.6 0.16 3.4E-06 41.0 5.3 16 30-45 16-31 (188)
427 PRK14721 flhF flagellar biosyn 93.6 0.94 2E-05 41.4 10.5 57 124-184 267-324 (420)
428 PRK14948 DNA polymerase III su 93.6 0.44 9.5E-06 46.0 8.9 18 29-46 39-56 (620)
429 TIGR02237 recomb_radB DNA repa 93.5 0.093 2E-06 43.1 3.9 35 28-62 12-49 (209)
430 cd01130 VirB11-like_ATPase Typ 93.5 0.13 2.8E-06 41.4 4.6 33 12-44 8-41 (186)
431 TIGR03600 phage_DnaB phage rep 93.4 0.59 1.3E-05 43.1 9.3 45 28-73 194-242 (421)
432 TIGR01425 SRP54_euk signal rec 93.4 0.65 1.4E-05 42.4 9.1 31 31-61 103-136 (429)
433 TIGR03345 VI_ClpV1 type VI sec 93.3 0.71 1.5E-05 46.5 10.1 28 18-45 192-225 (852)
434 KOG0741 AAA+-type ATPase [Post 93.3 0.46 9.9E-06 43.9 7.9 116 30-187 540-661 (744)
435 PF03796 DnaB_C: DnaB-like hel 93.3 0.5 1.1E-05 40.3 8.0 35 28-62 19-57 (259)
436 PRK00411 cdc6 cell division co 93.2 0.4 8.7E-06 43.8 7.9 17 29-45 56-72 (394)
437 KOG0701 dsRNA-specific nucleas 93.1 0.077 1.7E-06 55.4 3.3 94 230-323 294-399 (1606)
438 PRK07399 DNA polymerase III su 93.1 0.32 6.9E-06 42.7 6.7 38 125-168 123-160 (314)
439 PRK13822 conjugal transfer cou 93.1 0.17 3.8E-06 48.8 5.4 56 29-84 225-281 (641)
440 PRK05986 cob(I)alamin adenolsy 92.9 0.4 8.6E-06 38.4 6.3 51 123-176 112-162 (191)
441 PRK00440 rfc replication facto 92.9 1.2 2.5E-05 39.4 10.1 16 30-45 40-55 (319)
442 PF06733 DEAD_2: DEAD_2; Inte 92.8 0.049 1.1E-06 43.3 1.2 40 99-140 118-159 (174)
443 PF03237 Terminase_6: Terminas 92.8 0.34 7.3E-06 43.8 6.8 37 32-68 1-42 (384)
444 TIGR02655 circ_KaiC circadian 92.8 0.18 3.9E-06 47.3 5.0 52 28-80 21-76 (484)
445 PRK05595 replicative DNA helic 92.7 0.4 8.6E-06 44.5 7.1 44 29-73 202-249 (444)
446 PRK14971 DNA polymerase III su 92.7 0.43 9.4E-06 46.0 7.5 41 125-171 120-160 (614)
447 TIGR00959 ffh signal recogniti 92.7 0.49 1.1E-05 43.4 7.4 52 31-82 102-160 (428)
448 KOG0652 26S proteasome regulat 92.6 0.47 1E-05 39.5 6.5 18 29-46 206-223 (424)
449 PRK08451 DNA polymerase III su 92.6 0.44 9.5E-06 44.9 7.2 16 31-46 39-54 (535)
450 PRK14723 flhF flagellar biosyn 92.6 0.56 1.2E-05 46.0 8.1 52 29-80 186-245 (767)
451 cd01393 recA_like RecA is a b 92.6 0.17 3.7E-06 42.2 4.2 36 28-63 19-63 (226)
452 TIGR00416 sms DNA repair prote 92.6 0.3 6.5E-06 45.3 6.1 88 28-140 94-184 (454)
453 PRK08840 replicative DNA helic 92.5 0.99 2.2E-05 42.0 9.4 45 29-74 218-266 (464)
454 cd01123 Rad51_DMC1_radA Rad51_ 92.5 0.2 4.3E-06 42.0 4.5 34 28-61 19-61 (235)
455 PRK09302 circadian clock prote 92.5 0.23 4.9E-06 47.1 5.3 51 28-79 273-326 (509)
456 cd00561 CobA_CobO_BtuR ATP:cor 92.4 0.8 1.7E-05 35.6 7.3 49 123-174 92-140 (159)
457 TIGR02767 TraG-Ti Ti-type conj 92.4 0.26 5.6E-06 47.4 5.5 55 29-83 212-268 (623)
458 PF05729 NACHT: NACHT domain 92.3 0.5 1.1E-05 36.8 6.4 15 31-45 3-17 (166)
459 KOG2228 Origin recognition com 92.3 0.71 1.5E-05 40.2 7.3 17 28-44 49-65 (408)
460 TIGR02397 dnaX_nterm DNA polym 92.3 0.45 9.8E-06 42.7 6.8 16 30-45 38-53 (355)
461 PRK14953 DNA polymerase III su 92.2 1.1 2.4E-05 42.0 9.3 17 31-47 41-57 (486)
462 PRK06904 replicative DNA helic 92.2 1.6 3.4E-05 40.9 10.2 45 29-74 222-270 (472)
463 TIGR00665 DnaB replicative DNA 92.2 0.57 1.2E-05 43.4 7.4 47 28-75 195-245 (434)
464 TIGR00767 rho transcription te 92.1 0.29 6.2E-06 44.0 5.0 20 27-46 167-186 (415)
465 KOG0745 Putative ATP-dependent 92.0 0.1 2.2E-06 46.7 2.0 20 27-46 225-244 (564)
466 PRK08506 replicative DNA helic 91.9 0.97 2.1E-05 42.3 8.6 45 29-74 193-240 (472)
467 PRK06647 DNA polymerase III su 91.8 0.51 1.1E-05 45.0 6.8 17 30-46 40-56 (563)
468 TIGR00614 recQ_fam ATP-depende 91.8 0.97 2.1E-05 42.4 8.6 60 227-286 50-109 (470)
469 PF01745 IPT: Isopentenyl tran 91.7 0.094 2E-06 42.4 1.5 28 31-58 4-31 (233)
470 cd01125 repA Hexameric Replica 91.6 0.71 1.5E-05 38.8 6.9 17 30-46 3-19 (239)
471 cd01129 PulE-GspE PulE/GspE Th 91.6 0.2 4.4E-06 42.8 3.5 32 14-45 64-97 (264)
472 TIGR03819 heli_sec_ATPase heli 91.6 0.33 7.1E-06 43.1 4.9 52 14-65 163-217 (340)
473 PRK10436 hypothetical protein; 91.5 0.19 4.1E-06 46.5 3.5 32 14-45 202-235 (462)
474 PRK04841 transcriptional regul 91.5 0.93 2E-05 46.5 8.8 33 28-61 32-64 (903)
475 PRK09519 recA DNA recombinatio 91.5 0.27 5.9E-06 48.2 4.6 96 21-139 47-151 (790)
476 TIGR02238 recomb_DMC1 meiotic 91.4 0.28 6.1E-06 43.0 4.2 49 29-77 97-155 (313)
477 PRK14701 reverse gyrase; Provi 91.3 0.63 1.4E-05 50.0 7.4 61 227-287 121-187 (1638)
478 PRK13880 conjugal transfer cou 91.3 0.34 7.3E-06 47.0 5.1 54 29-82 176-231 (636)
479 PF00437 T2SE: Type II/IV secr 91.2 0.14 3E-06 44.0 2.3 38 28-65 127-167 (270)
480 PRK09361 radB DNA repair and r 91.2 0.28 6.1E-06 40.8 4.0 42 20-61 10-59 (225)
481 TIGR02788 VirB11 P-type DNA tr 91.2 0.3 6.5E-06 42.9 4.3 20 25-44 141-160 (308)
482 PRK13876 conjugal transfer cou 91.2 0.31 6.6E-06 47.3 4.6 49 29-77 145-194 (663)
483 TIGR02533 type_II_gspE general 91.1 0.24 5.1E-06 46.4 3.7 32 14-45 226-259 (486)
484 COG0513 SrmB Superfamily II DN 91.1 1.5 3.3E-05 41.5 9.1 67 231-301 102-179 (513)
485 KOG0727 26S proteasome regulat 91.1 1.5 3.3E-05 36.4 7.8 28 18-45 177-206 (408)
486 PF01078 Mg_chelatase: Magnesi 91.1 0.2 4.3E-06 40.6 2.8 19 27-45 21-39 (206)
487 cd00544 CobU Adenosylcobinamid 91.1 0.18 3.9E-06 39.8 2.5 45 31-75 2-46 (169)
488 PRK15483 type III restriction- 91.1 0.39 8.4E-06 48.2 5.3 135 30-173 61-240 (986)
489 KOG1806 DEAD box containing he 91.0 0.34 7.4E-06 48.0 4.7 68 13-80 738-810 (1320)
490 PF07728 AAA_5: AAA domain (dy 91.0 0.12 2.6E-06 39.2 1.5 16 30-45 1-16 (139)
491 PF13207 AAA_17: AAA domain; P 91.0 0.14 3E-06 37.8 1.7 15 31-45 2-16 (121)
492 COG4185 Uncharacterized protei 90.9 0.2 4.4E-06 38.4 2.5 37 31-68 5-41 (187)
493 PRK08760 replicative DNA helic 90.9 1.2 2.7E-05 41.6 8.1 47 29-76 230-280 (476)
494 PRK11331 5-methylcytosine-spec 90.9 0.25 5.5E-06 45.1 3.5 30 17-46 183-212 (459)
495 PF01637 Arch_ATPase: Archaeal 90.9 0.35 7.6E-06 40.2 4.3 17 28-44 20-36 (234)
496 cd01128 rho_factor Transcripti 90.8 0.39 8.4E-06 40.5 4.4 20 25-44 13-32 (249)
497 smart00488 DEXDc2 DEAD-like he 90.8 0.11 2.3E-06 45.1 1.1 41 99-140 210-250 (289)
498 smart00489 DEXDc3 DEAD-like he 90.8 0.11 2.3E-06 45.1 1.1 41 99-140 210-250 (289)
499 PF13555 AAA_29: P-loop contai 90.7 0.18 3.8E-06 32.0 1.7 18 28-45 23-40 (62)
500 PRK13531 regulatory ATPase Rav 90.7 0.25 5.5E-06 45.5 3.4 26 20-45 31-56 (498)
No 1
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.3e-60 Score=435.52 Aligned_cols=367 Identities=48% Similarity=0.782 Sum_probs=316.6
Q ss_pred HHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHHcCCceEEc
Q 037567 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGINAEFL 83 (374)
Q Consensus 4 ~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 83 (374)
.|++.|||++|+|+|.++++.+++++++++.+|||+|||++|++|++.....++|++|+++|+.|+.+.+...|+....+
T Consensus 2 ~l~~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l 81 (470)
T TIGR00614 2 ILKTVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCSDGITLVISPLISLMEDQVLQLKASGIPATFL 81 (470)
T ss_pred hhHhhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHcCCcEEEEecHHHHHHHHHHHHHHcCCcEEEE
Confidence 58899999999999999999999999999999999999999999999888999999999999999999999999988887
Q ss_pred CCCCCchhh---hhhhhcCCeeEEEEcCcccccCchhhHHHH-HhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhc
Q 037567 84 GSAQTDSSV---QTKAETGYFQLLFMTPEKACIIPISFWSKL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFL 159 (374)
Q Consensus 84 ~~~~~~~~~---~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~-~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~ 159 (374)
.+.....+. ......+.++|+++||+++..... ....+ ...+++++||||||.+.+||.+++..+..+..+...+
T Consensus 82 ~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~-~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~ 160 (470)
T TIGR00614 82 NSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNR-LLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKF 160 (470)
T ss_pred eCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchh-HHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHc
Confidence 776544322 223345678999999999865432 22333 5678999999999999999999999999998888888
Q ss_pred CCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEEEeecCCcchHHHHHHHHHHhhcCCCcEEEEecchh
Q 037567 160 LGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239 (374)
Q Consensus 160 ~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~ 239 (374)
++.+++++|||+++....++...+++..+.+...+.+++++.+.+..... ....+++..+ .....+..+||||++++
T Consensus 161 ~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~~~~~--~~~~~l~~~l-~~~~~~~~~IIF~~s~~ 237 (470)
T TIGR00614 161 PNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVRRKTP--KILEDLLRFI-RKEFKGKSGIIYCPSRK 237 (470)
T ss_pred CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEEeCCc--cHHHHHHHHH-HHhcCCCceEEEECcHH
Confidence 99999999999999988888999998888888888888887665544322 2233333333 32335667799999999
Q ss_pred HHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCCChhHHHHhhccC
Q 037567 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRC 319 (374)
Q Consensus 240 ~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~ 319 (374)
.++.+++.|++.|+.+..+||+++.++|..+++.|.+|+.+|||||+++++|+|+|++++||++++|.|+..|+||+||+
T Consensus 238 ~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRa 317 (470)
T TIGR00614 238 KSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRA 317 (470)
T ss_pred HHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEeeccCCCcccceeccccchHHHHHHHHHHHHHHHHhhhcccCC
Q 037567 320 GRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLLAAQRYCLLTTCRR 374 (374)
Q Consensus 320 ~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 374 (374)
||.|.+|.|++++.+.|...++.++.......++......+..|..+++.+.|||
T Consensus 318 GR~G~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~crr 372 (470)
T TIGR00614 318 GRDGLPSECHLFYAPADINRLRRLLMEEPDGQQRTYKLKLYEMMEYCLNSSTCRR 372 (470)
T ss_pred CCCCCCceEEEEechhHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhccccCHH
Confidence 9999999999999999999999888777666666666777888889999999997
No 2
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=9.1e-60 Score=446.89 Aligned_cols=369 Identities=39% Similarity=0.645 Sum_probs=309.7
Q ss_pred hHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHHcCCceEE
Q 037567 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGINAEF 82 (374)
Q Consensus 3 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 82 (374)
..++++||+..|+|+|.++++.+++|+++++.+|||+|||++|++|++.....+||++|+++|+.++...+...|+....
T Consensus 450 ~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~ 529 (1195)
T PLN03137 450 VNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMNLLQANIPAAS 529 (1195)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHHHhCCCeEEE
Confidence 46788999999999999999999999999999999999999999999998899999999999999888888888988887
Q ss_pred cCCCCCchhhhhhh---h--cCCeeEEEEcCcccccC--chhhHHHH-HhcCccEEEEeccchhhcccCcchHHHHHHHH
Q 037567 83 LGSAQTDSSVQTKA---E--TGYFQLLFMTPEKACII--PISFWSKL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDK 154 (374)
Q Consensus 83 ~~~~~~~~~~~~~~---~--~~~~~i~i~T~~~l~~~--~~~~~~~~-~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~ 154 (374)
+.++.......... . .+.++|+++||+++... +......+ ....+.+|||||||.+.+||.++++.+..+..
T Consensus 530 L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~ 609 (1195)
T PLN03137 530 LSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGI 609 (1195)
T ss_pred EECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHH
Confidence 76655443332211 1 26789999999998642 11212222 22457899999999999999999999998888
Q ss_pred HHHhcCCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEEEeecCCcchHHHHHHHHHHhhcCCCcEEEE
Q 037567 155 LRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVY 234 (374)
Q Consensus 155 ~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf 234 (374)
+...+++.++++||||++.....++...+++.++.+...+.+++++.+.+.... ..... .+..++.....+..+|||
T Consensus 610 Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~k~--kk~le-~L~~~I~~~~~~esgIIY 686 (1195)
T PLN03137 610 LKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKT--KKCLE-DIDKFIKENHFDECGIIY 686 (1195)
T ss_pred HHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEeccc--hhHHH-HHHHHHHhcccCCCceeE
Confidence 888888999999999999999888999999988888888888888776654322 11122 333333333346789999
Q ss_pred ecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCCChhHHHH
Q 037567 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQ 314 (374)
Q Consensus 235 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q 314 (374)
|.+++.++.+++.|.+.|+.+..+||+++.++|..++++|..|+++|||||.++++|||+|++++||++++|.|+..|+|
T Consensus 687 C~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQ 766 (1195)
T PLN03137 687 CLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 766 (1195)
T ss_pred eCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCceEEEEEeeccCCCcccceeccccchH---------------HHHHHHHHHHHHHHHhhhc-ccCC
Q 037567 315 ESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTEN---------------QRTAIMESLLAAQRYCLLT-TCRR 374 (374)
Q Consensus 315 ~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~~~~~~~~~~-~~~~ 374 (374)
++|||||.|.++.|+++|...|+...+.++.....+. ..+..++.|..|.+||+.+ .|||
T Consensus 767 riGRAGRDG~~g~cILlys~~D~~~~~~lI~~~~~~~s~~~~~~~r~~~s~~~~e~~~~~L~~m~~yce~~~~CRR 842 (1195)
T PLN03137 767 ECGRAGRDGQRSSCVLYYSYSDYIRVKHMISQGGVEQSPMAMGYNRMASSGRILETNTENLLRMVSYCENEVDCRR 842 (1195)
T ss_pred hhcccCCCCCCceEEEEecHHHHHHHHHHHhccccccchhhhhhcccchhHHHHHHHHHHHHHHHHHHhChHhhHH
Confidence 9999999999999999999999888887775432211 2344678999999999996 8997
No 3
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.6e-58 Score=434.75 Aligned_cols=365 Identities=42% Similarity=0.720 Sum_probs=314.7
Q ss_pred hHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHHcCCceEE
Q 037567 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGINAEF 82 (374)
Q Consensus 3 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 82 (374)
+.|++.|||++|+|+|.++++.+++++++++.+|||+|||++|+++++.....++|++|+++|+.|+.+.+...|+....
T Consensus 15 ~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~~g~tlVisPl~sL~~dqv~~l~~~gi~~~~ 94 (607)
T PRK11057 15 QVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVLDGLTLVVSPLISLMKDQVDQLLANGVAAAC 94 (607)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHcCCCEEEEecHHHHHHHHHHHHHHcCCcEEE
Confidence 57889999999999999999999999999999999999999999999988889999999999999999999999988877
Q ss_pred cCCCCCchhh---hhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhc
Q 037567 83 LGSAQTDSSV---QTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFL 159 (374)
Q Consensus 83 ~~~~~~~~~~---~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~ 159 (374)
..+....... ......+..+++++||+++... .....+...+++++||||||.+.+||.++++.+..+..+...+
T Consensus 95 ~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~--~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~ 172 (607)
T PRK11057 95 LNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMD--NFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRF 172 (607)
T ss_pred EcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcCh--HHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhC
Confidence 7665544332 2223456689999999998642 3334455567899999999999999999999999999888888
Q ss_pred CCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEEEeecCCcchHHHHHHHHHHhhcCCCcEEEEecchh
Q 037567 160 LGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239 (374)
Q Consensus 160 ~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~ 239 (374)
++.+++++|||++.....++...+++.++.+...+.+++++.+.+... ......++.. +.. ..++++||||++++
T Consensus 173 p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl~~~v~~~---~~~~~~l~~~-l~~-~~~~~~IIFc~tr~ 247 (607)
T PRK11057 173 PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYTLVEK---FKPLDQLMRY-VQE-QRGKSGIIYCNSRA 247 (607)
T ss_pred CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcceeeeeec---cchHHHHHHH-HHh-cCCCCEEEEECcHH
Confidence 899999999999998887888888888888877777777765443221 1222333333 222 36789999999999
Q ss_pred HHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCCChhHHHHhhccC
Q 037567 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRC 319 (374)
Q Consensus 240 ~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~ 319 (374)
.++.+++.|++.|+.+..+||+++.++|..+++.|..|+.+|||||+++++|+|+|++++||++++|.|...|+|++||+
T Consensus 248 ~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRa 327 (607)
T PRK11057 248 KVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRA 327 (607)
T ss_pred HHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEeeccCCCcccceeccccchHHHHHHHHHHHHHHHHhhhcccCC
Q 037567 320 GRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLLAAQRYCLLTTCRR 374 (374)
Q Consensus 320 ~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 374 (374)
||.|.+|.+++++++.|...++.++.+.............|..|.+||+++.|||
T Consensus 328 GR~G~~~~~ill~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Crr 382 (607)
T PRK11057 328 GRDGLPAEAMLFYDPADMAWLRRCLEEKPAGQQQDIERHKLNAMGAFAEAQTCRR 382 (607)
T ss_pred cCCCCCceEEEEeCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcccCHH
Confidence 9999999999999999998888888777666666667789999999999999997
No 4
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=2.9e-57 Score=427.89 Aligned_cols=366 Identities=43% Similarity=0.693 Sum_probs=316.5
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHHcCCceE
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGINAE 81 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 81 (374)
.+.|++.|||++|+|+|.++++.+++|+++++.+|||+|||++|+++++.....++|++|+++|+.|+.+.++..|+.+.
T Consensus 2 ~~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~~g~~lVisPl~sL~~dq~~~l~~~gi~~~ 81 (591)
T TIGR01389 2 QQVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLLKGLTVVISPLISLMKDQVDQLRAAGVAAA 81 (591)
T ss_pred hHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHcCCcEE
Confidence 46799999999999999999999999999999999999999999999998888999999999999999999999999888
Q ss_pred EcCCCCCchhh---hhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHh
Q 037567 82 FLGSAQTDSSV---QTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTF 158 (374)
Q Consensus 82 ~~~~~~~~~~~---~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~ 158 (374)
.+.+....... ......+.++|+++||+++... .+.......++++|||||||.+.+||.++++.+..+..+...
T Consensus 82 ~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~--~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~ 159 (591)
T TIGR01389 82 YLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQD--YFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAER 159 (591)
T ss_pred EEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcCh--HHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHh
Confidence 77766544432 2233456789999999998653 333455567899999999999999999999999999999888
Q ss_pred cCCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEEEeecCCcchHHHHHHHHHHhhcCCCcEEEEecch
Q 037567 159 LLGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238 (374)
Q Consensus 159 ~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~ 238 (374)
+++.+++++|||+++....++...+++..+.....+.+++++.+.+..... ..+.+.+++... .+.++||||+++
T Consensus 160 ~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~----~~~~l~~~l~~~-~~~~~IIf~~sr 234 (591)
T TIGR01389 160 FPQVPRIALTATADAETRQDIRELLRLADANEFITSFDRPNLRFSVVKKNN----KQKFLLDYLKKH-RGQSGIIYASSR 234 (591)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCCcEEEEEeCCC----HHHHHHHHHHhc-CCCCEEEEECcH
Confidence 888899999999999988889999998888777777778777665543222 223333343332 368899999999
Q ss_pred hHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCCChhHHHHhhcc
Q 037567 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGR 318 (374)
Q Consensus 239 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR 318 (374)
+.++.+++.|...|+++..+||+++.++|..+++.|..|+++|||||+++++|+|+|++++||++++|.|...|.|++||
T Consensus 235 ~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GR 314 (591)
T TIGR01389 235 KKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGR 314 (591)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEEeeccCCCcccceeccccchHH-HHHHHHHHHHHHHHhhhcccCC
Q 037567 319 CGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ-RTAIMESLLAAQRYCLLTTCRR 374 (374)
Q Consensus 319 ~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~ 374 (374)
+||.|.++.++++|.+.|....+.++.+...... .......+.+|..||+...|||
T Consensus 315 aGR~G~~~~~il~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~c~r 371 (591)
T TIGR01389 315 AGRDGLPAEAILLYSPADIALLKRRIEQSEADDDYKQIEREKLRAMIAYCETQTCRR 371 (591)
T ss_pred ccCCCCCceEEEecCHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHcccccHh
Confidence 9999999999999999999888888877554443 3446788999999999999997
No 5
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1e-56 Score=403.61 Aligned_cols=367 Identities=44% Similarity=0.723 Sum_probs=328.7
Q ss_pred hHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHHcCCceEE
Q 037567 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGINAEF 82 (374)
Q Consensus 3 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 82 (374)
..|+++||+..++|-|.+++..+++++++++.+|||.|||++|.+|++.....+|||+|..+|..+..+.+...|+.+..
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~ 86 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLEGLTLVVSPLISLMKDQVDQLEAAGIRAAY 86 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhcCCCEEEECchHHHHHHHHHHHHHcCceeeh
Confidence 46899999999999999999999999999999999999999999999988889999999999999999999999999988
Q ss_pred cCCCCCchhh---hhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhc
Q 037567 83 LGSAQTDSSV---QTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFL 159 (374)
Q Consensus 83 ~~~~~~~~~~---~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~ 159 (374)
..+.....+. ......+..++++.+||++..- .....+....+.+++|||||.+.+||.++++.+..+..+...+
T Consensus 87 lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~--~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~ 164 (590)
T COG0514 87 LNSTLSREERQQVLNQLKSGQLKLLYISPERLMSP--RFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGL 164 (590)
T ss_pred hhcccCHHHHHHHHHHHhcCceeEEEECchhhcCh--HHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhC
Confidence 8877555443 3445567789999999998765 4446666678899999999999999999999999999999999
Q ss_pred CCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEEEeecCCcchHHHHHHHHHHhhcCCCcEEEEecchh
Q 037567 160 LGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239 (374)
Q Consensus 160 ~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~ 239 (374)
++.+++++|||.++....++...+++..+.+...+++++++.+.+........... .+.+ ......+..||||.|++
T Consensus 165 ~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~~q~~-fi~~--~~~~~~~~GIIYc~sRk 241 (590)
T COG0514 165 PNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPSDQLA-FLAT--VLPQLSKSGIIYCLTRK 241 (590)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcccHHHHHH-HHHh--hccccCCCeEEEEeeHH
Confidence 99999999999999999999999999999999999999999988876653222222 2222 12235677899999999
Q ss_pred HHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCCChhHHHHhhccC
Q 037567 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRC 319 (374)
Q Consensus 240 ~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~ 319 (374)
.++.+++.|...|+.+..+|++++.++|+.+-+.|..++.+|+|||.+.++|||-|++++|||+++|.|++.|.|-+|||
T Consensus 242 ~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRA 321 (590)
T COG0514 242 KVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRA 321 (590)
T ss_pred hHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEeeccCCCcccceecccc-chHHHHHHHHHHHHHHHHhhhcccCC
Q 037567 320 GRDGIASVCWLYYARSNFAKGDFYCGESQ-TENQRTAIMESLLAAQRYCLLTTCRR 374 (374)
Q Consensus 320 ~R~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~ 374 (374)
||.|.+..|+++|.+.|....+.++.... .....+....+|.+|.++|+.+.|||
T Consensus 322 GRDG~~a~aill~~~~D~~~~~~~i~~~~~~~~~~~~~~~kl~~~~~~~e~~~crr 377 (590)
T COG0514 322 GRDGLPAEAILLYSPEDIRWQRYLIEQSKPDEEQKQIELAKLRQMIAYCETQTCRR 377 (590)
T ss_pred cCCCCcceEEEeeccccHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcccccchH
Confidence 99999999999999999999999888766 44455557899999999999999996
No 6
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-55 Score=389.72 Aligned_cols=333 Identities=23% Similarity=0.330 Sum_probs=269.4
Q ss_pred hHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc------------cCCcEEEEcchHHHHHHHH
Q 037567 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV------------TGKTALVVSPLISLMQDQV 70 (374)
Q Consensus 3 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~------------~~~~~lil~P~~~l~~q~~ 70 (374)
.+++. .||+.|+|+|.+.|+.++.|+|++..|.||||||++|++|++. .++.+||++|||+|+.|+.
T Consensus 104 ~~lk~-~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~ 182 (519)
T KOG0331|consen 104 KALKE-QGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQ 182 (519)
T ss_pred HHHHh-cCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHH
Confidence 45556 7999999999999999999999999999999999999999764 2678999999999999999
Q ss_pred HHHHHcCCc----eEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcch
Q 037567 71 MSLKQRGIN----AEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFR 146 (374)
Q Consensus 71 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~ 146 (374)
+.+..++.. ..+++++..... +......+.+|+|+||+++.++++. ....+..+.++|+||||+|.+.|++
T Consensus 183 ~~~~~~~~~~~~~~~cvyGG~~~~~-Q~~~l~~gvdiviaTPGRl~d~le~--g~~~l~~v~ylVLDEADrMldmGFe-- 257 (519)
T KOG0331|consen 183 AEAREFGKSLRLRSTCVYGGAPKGP-QLRDLERGVDVVIATPGRLIDLLEE--GSLNLSRVTYLVLDEADRMLDMGFE-- 257 (519)
T ss_pred HHHHHHcCCCCccEEEEeCCCCccH-HHHHHhcCCcEEEeCChHHHHHHHc--CCccccceeEEEeccHHhhhccccH--
Confidence 999887433 334444444433 3344556689999999999988776 6777889999999999999998876
Q ss_pred HHHHHHHHHHHhc-C-CCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccC----CCceeEEEEeecCCcchHHHHHHH
Q 037567 147 LEYKQLDKLRTFL-L-GVPFVALTATATEKVRIDIINSLKLKNPYVTIASFD----RKNLFYGVKVINRGQSFVDELVQE 220 (374)
Q Consensus 147 ~~~~~~~~~~~~~-~-~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 220 (374)
..+..+.... + ..+.+++|||++.....-....+. .+..+.....+ ..++...+...+ .......+..
T Consensus 258 ---~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~-~~~~i~ig~~~~~~a~~~i~qive~~~--~~~K~~~l~~ 331 (519)
T KOG0331|consen 258 ---PQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLN-NPIQINVGNKKELKANHNIRQIVEVCD--ETAKLRKLGK 331 (519)
T ss_pred ---HHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhc-CceEEEecchhhhhhhcchhhhhhhcC--HHHHHHHHHH
Confidence 6666666666 3 347999999999988754444444 43334443332 122222222222 3333444444
Q ss_pred HHHhh--cCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCcc
Q 037567 221 ILKSV--AGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298 (374)
Q Consensus 221 ~~~~~--~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~ 298 (374)
++... ...+|+||||+++..|++++..++..++++..+||+.+..+|..+++.|++|+..|||||+.+++|+|+|+++
T Consensus 332 lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~ 411 (519)
T KOG0331|consen 332 LLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVD 411 (519)
T ss_pred HHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCcccc
Confidence 54444 3678999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCChhHHHHhhccCCCCCCceEEEEEeeccCCCcccceeccc
Q 037567 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGES 347 (374)
Q Consensus 299 ~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~ 347 (374)
+||+|++|.+.++|+||+||+||.|+.|.+++|++..+......+.+..
T Consensus 412 lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l 460 (519)
T KOG0331|consen 412 LVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVL 460 (519)
T ss_pred EEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988877776544
No 7
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=4.6e-55 Score=405.90 Aligned_cols=358 Identities=22% Similarity=0.277 Sum_probs=269.7
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc-----------cCCcEEEEcchHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV-----------TGKTALVVSPLISLMQDQV 70 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~-----------~~~~~lil~P~~~l~~q~~ 70 (374)
.++|++ +||.+|+|+|.+++|.+++++++++.||||||||++|++|++. .++.+||++||++|+.|+.
T Consensus 142 ~~~l~~-~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~ 220 (545)
T PTZ00110 142 LKSLKN-AGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIR 220 (545)
T ss_pred HHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHH
Confidence 466777 8999999999999999999999999999999999999988753 1467999999999999999
Q ss_pred HHHHHcC----CceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcch
Q 037567 71 MSLKQRG----INAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFR 146 (374)
Q Consensus 71 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~ 146 (374)
+.+..++ +......++....... ......++|+|+||++|.+++.. ....+..+++||+||||++.++++.
T Consensus 221 ~~~~~~~~~~~i~~~~~~gg~~~~~q~-~~l~~~~~IlVaTPgrL~d~l~~--~~~~l~~v~~lViDEAd~mld~gf~-- 295 (545)
T PTZ00110 221 EQCNKFGASSKIRNTVAYGGVPKRGQI-YALRRGVEILIACPGRLIDFLES--NVTNLRRVTYLVLDEADRMLDMGFE-- 295 (545)
T ss_pred HHHHHHhcccCccEEEEeCCCCHHHHH-HHHHcCCCEEEECHHHHHHHHHc--CCCChhhCcEEEeehHHhhhhcchH--
Confidence 9998874 3344444444333332 23345689999999998776654 2344677899999999999987754
Q ss_pred HHHHHHHHHHHhc-CCCCeeEEEeecCcccHHHHHHhcCCCCCe-EEEeccC---CCceeEEEEeecCCcchHHHHHHHH
Q 037567 147 LEYKQLDKLRTFL-LGVPFVALTATATEKVRIDIINSLKLKNPY-VTIASFD---RKNLFYGVKVINRGQSFVDELVQEI 221 (374)
Q Consensus 147 ~~~~~~~~~~~~~-~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (374)
..+..+.... ++.+++++|||++..... +...+....+. +...... ..++...+..... ......+..+
T Consensus 296 ---~~i~~il~~~~~~~q~l~~SAT~p~~v~~-l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~--~~k~~~L~~l 369 (545)
T PTZ00110 296 ---PQIRKIVSQIRPDRQTLMWSATWPKEVQS-LARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEE--HEKRGKLKML 369 (545)
T ss_pred ---HHHHHHHHhCCCCCeEEEEEeCCCHHHHH-HHHHHhccCCEEEEECCCccccCCCeeEEEEEEec--hhHHHHHHHH
Confidence 3344444433 468899999999876543 34433333332 2222211 1222222222222 2223334444
Q ss_pred HHhhc-CCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEE
Q 037567 222 LKSVA-GAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300 (374)
Q Consensus 222 ~~~~~-~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~v 300 (374)
+.... .+.++||||++++.++.+++.|...++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 370 l~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~V 449 (545)
T PTZ00110 370 LQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYV 449 (545)
T ss_pred HHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEE
Confidence 44433 67899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCChhHHHHhhccCCCCCCceEEEEEeeccCCCcccceeccccchHHHHHHHHHHHHHHHHhhh-cccC
Q 037567 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLLAAQRYCLL-TTCR 373 (374)
Q Consensus 301 i~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~ 373 (374)
|++++|.+..+|+||+||+||.|..|.+++|+++++...+..+.+-..... +.+..+|.+|....+. ..||
T Consensus 450 I~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~--q~vp~~l~~~~~~~~~~~~~~ 521 (545)
T PTZ00110 450 INFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAK--QPVPPELEKLSNERSNGTERR 521 (545)
T ss_pred EEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHcc--CCCCHHHHHHHHHhcCCcccc
Confidence 999999999999999999999999999999999998777666654433322 2355677777666653 3444
No 8
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.6e-53 Score=387.97 Aligned_cols=332 Identities=19% Similarity=0.232 Sum_probs=252.4
Q ss_pred ChhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc-------------cCCcEEEEcchHHHHH
Q 037567 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV-------------TGKTALVVSPLISLMQ 67 (374)
Q Consensus 1 l~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~-------------~~~~~lil~P~~~l~~ 67 (374)
|+++|.. +||..|+|+|.++++.+++|+|+++.||||||||++|+++++. .+.++||++|+++|+.
T Consensus 19 l~~~l~~-~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~ 97 (423)
T PRK04837 19 VVEALEK-KGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAV 97 (423)
T ss_pred HHHHHHH-CCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHH
Confidence 3567777 8999999999999999999999999999999999999988763 1367999999999999
Q ss_pred HHHHHHHHc----CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccC
Q 037567 68 DQVMSLKQR----GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGH 143 (374)
Q Consensus 68 q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~ 143 (374)
|+.+.+..+ ++.+..+.++...... ......+++|+|+||+++..++.. ....+.+++++|+||||++.++++
T Consensus 98 Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~-~~~l~~~~~IlV~TP~~l~~~l~~--~~~~l~~v~~lViDEad~l~~~~f 174 (423)
T PRK04837 98 QIHADAEPLAQATGLKLGLAYGGDGYDKQ-LKVLESGVDILIGTTGRLIDYAKQ--NHINLGAIQVVVLDEADRMFDLGF 174 (423)
T ss_pred HHHHHHHHHhccCCceEEEEECCCCHHHH-HHHhcCCCCEEEECHHHHHHHHHc--CCcccccccEEEEecHHHHhhccc
Confidence 998887654 5566655554433322 223345689999999998766543 334567899999999999988765
Q ss_pred cchHHHHHHHHHHHhcC---CCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEEEeecCCcchHHHHHHH
Q 037567 144 DFRLEYKQLDKLRTFLL---GVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQE 220 (374)
Q Consensus 144 ~~~~~~~~~~~~~~~~~---~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (374)
. ..+..+....+ ..+.+++|||++..........+. .+..+...........................+..
T Consensus 175 ~-----~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~-~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 248 (423)
T PRK04837 175 I-----KDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMN-NPEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQT 248 (423)
T ss_pred H-----HHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCC-CCEEEEEcCCCcCCCceeEEEEeCCHHHHHHHHHH
Confidence 3 33344444443 345789999998776543333332 22222222111111111111222222333445555
Q ss_pred HHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEE
Q 037567 221 ILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300 (374)
Q Consensus 221 ~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~v 300 (374)
++.. ....++||||+++..++.+++.|.+.|+.+..+||+++.++|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 249 ll~~-~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~V 327 (423)
T PRK04837 249 LIEE-EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHV 327 (423)
T ss_pred HHHh-cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEE
Confidence 5544 256889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCChhHHHHhhccCCCCCCceEEEEEeeccCCCcccce
Q 037567 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFY 343 (374)
Q Consensus 301 i~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~ 343 (374)
|++++|.+..+|+||+||+||.|+.|.+++|+.+.+...+..+
T Consensus 328 I~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i 370 (423)
T PRK04837 328 FNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAI 370 (423)
T ss_pred EEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHH
Confidence 9999999999999999999999999999999998865444443
No 9
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=4.1e-53 Score=391.92 Aligned_cols=333 Identities=23% Similarity=0.284 Sum_probs=251.8
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc-------------cCCcEEEEcchHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV-------------TGKTALVVSPLISLMQD 68 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~-------------~~~~~lil~P~~~l~~q 68 (374)
.++|.+ .||..|+|+|.++++.+++|+++++.||||||||++|++|++. .++++||++||++|+.|
T Consensus 133 ~~~L~~-~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Q 211 (518)
T PLN00206 133 LLNLET-AGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQ 211 (518)
T ss_pred HHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHH
Confidence 456766 7999999999999999999999999999999999999998763 24679999999999999
Q ss_pred HHHHHHHcC----CceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCc
Q 037567 69 QVMSLKQRG----INAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHD 144 (374)
Q Consensus 69 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~ 144 (374)
+.+.++.++ .....+.++....... .....+++|+|+||++|..++.. ....+.++.+||+||||++.++|+.
T Consensus 212 i~~~~~~l~~~~~~~~~~~~gG~~~~~q~-~~l~~~~~IiV~TPgrL~~~l~~--~~~~l~~v~~lViDEad~ml~~gf~ 288 (518)
T PLN00206 212 VEDQAKVLGKGLPFKTALVVGGDAMPQQL-YRIQQGVELIVGTPGRLIDLLSK--HDIELDNVSVLVLDEVDCMLERGFR 288 (518)
T ss_pred HHHHHHHHhCCCCceEEEEECCcchHHHH-HHhcCCCCEEEECHHHHHHHHHc--CCccchheeEEEeecHHHHhhcchH
Confidence 988887653 3333333333222222 22345689999999998777654 3455678899999999999887753
Q ss_pred chHHHHHHHHHHHhcCCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEEEeecCCcchHHHHHHHHHHh
Q 037567 145 FRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKS 224 (374)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (374)
..+..+....++.+++++|||++.... .+...+......+...........................+.+++..
T Consensus 289 -----~~i~~i~~~l~~~q~l~~SATl~~~v~-~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~ 362 (518)
T PLN00206 289 -----DQVMQIFQALSQPQVLLFSATVSPEVE-KFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKS 362 (518)
T ss_pred -----HHHHHHHHhCCCCcEEEEEeeCCHHHH-HHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHh
Confidence 344555556678899999999988764 34444433322233322222221111111111111222333344433
Q ss_pred h-cCCCcEEEEecchhHHHHHHHHHHH-cCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEE
Q 037567 225 V-AGAGSIIVYCMTIKDVEEISKALKQ-LGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIH 302 (374)
Q Consensus 225 ~-~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~ 302 (374)
. ....++||||+++..++.+++.|.. .++.+..+||+++.++|..+++.|++|+.+|||||+.+++|+|+|++++||+
T Consensus 363 ~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~ 442 (518)
T PLN00206 363 KQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVII 442 (518)
T ss_pred hcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEE
Confidence 2 2346899999999999999999975 5889999999999999999999999999999999999999999999999999
Q ss_pred ECCCCChhHHHHhhccCCCCCCceEEEEEeeccCCCccccee
Q 037567 303 YGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYC 344 (374)
Q Consensus 303 ~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~ 344 (374)
+++|.+..+|+||+||+||.|..|.+++|++.++...+..+.
T Consensus 443 ~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~ 484 (518)
T PLN00206 443 FDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELV 484 (518)
T ss_pred eCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHH
Confidence 999999999999999999999999999999988765555544
No 10
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-53 Score=353.10 Aligned_cols=331 Identities=22% Similarity=0.278 Sum_probs=264.8
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc------cCCcEEEEcchHHHHHHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV------TGKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~------~~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
.++.++ .|+..|+++|.+++|.+++|++++..|.||||||.+|++|+++ +...++|++|+|+|+.|..+.+..
T Consensus 73 ~~ac~~-l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~ 151 (476)
T KOG0330|consen 73 LEACQE-LGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEA 151 (476)
T ss_pred HHHHHH-hCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHH
Confidence 456666 7899999999999999999999999999999999999999886 357799999999999999999988
Q ss_pred cC----CceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHH
Q 037567 76 RG----INAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQ 151 (374)
Q Consensus 76 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~ 151 (374)
+| +.+.++.++. +...+.......|+|+|+||++|.+++... +.+.+..++++|+|||+++.+..+. ..
T Consensus 152 Lg~~iglr~~~lvGG~-~m~~q~~~L~kkPhilVaTPGrL~dhl~~T-kgf~le~lk~LVlDEADrlLd~dF~-----~~ 224 (476)
T KOG0330|consen 152 LGSGIGLRVAVLVGGM-DMMLQANQLSKKPHILVATPGRLWDHLENT-KGFSLEQLKFLVLDEADRLLDMDFE-----EE 224 (476)
T ss_pred hccccCeEEEEEecCc-hHHHHHHHhhcCCCEEEeCcHHHHHHHHhc-cCccHHHhHHHhhchHHhhhhhhhH-----HH
Confidence 74 4444554443 333444555677999999999998776532 4556678899999999999986554 34
Q ss_pred HHHHHHhcC-CCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCC---ceeEEEEeecCCcchHHHHHHHHHHhhcC
Q 037567 152 LDKLRTFLL-GVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRK---NLFYGVKVINRGQSFVDELVQEILKSVAG 227 (374)
Q Consensus 152 ~~~~~~~~~-~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (374)
+..++..++ ..+.+++|||++....+ +....+..+.....+.... .+...+-... ..+....+-++++.. .
T Consensus 225 ld~ILk~ip~erqt~LfsATMt~kv~k--L~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~--~k~K~~yLV~ll~e~-~ 299 (476)
T KOG0330|consen 225 LDYILKVIPRERQTFLFSATMTKKVRK--LQRASLDNPVKVAVSSKYQTVDHLKQTYLFVP--GKDKDTYLVYLLNEL-A 299 (476)
T ss_pred HHHHHHhcCccceEEEEEeecchhhHH--HHhhccCCCeEEeccchhcchHHhhhheEecc--ccccchhHHHHHHhh-c
Confidence 444444444 68899999999998875 3344555554443332211 1111222222 222333444455543 6
Q ss_pred CCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCC
Q 037567 228 AGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPK 307 (374)
Q Consensus 228 ~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~ 307 (374)
++.+||||++......++-.|...|+.+..+||.|+.+.|...++.|++|..+||+||+.+++|+|+|.+++||+||.|.
T Consensus 300 g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~ 379 (476)
T KOG0330|consen 300 GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPT 379 (476)
T ss_pred CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhhccCCCCCCceEEEEEeeccCCCcccceec
Q 037567 308 TLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCG 345 (374)
Q Consensus 308 s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~ 345 (374)
+..+|+||+||++|.|..|.++.+++..|++.+.++..
T Consensus 380 ~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~ 417 (476)
T KOG0330|consen 380 HSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEH 417 (476)
T ss_pred cHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHH
Confidence 99999999999999999999999999999888777654
No 11
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=9.3e-53 Score=387.10 Aligned_cols=329 Identities=21% Similarity=0.260 Sum_probs=254.7
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcccccc------CCcEEEEcchHHHHHHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVT------GKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~------~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
.++|.. +||..|+|+|.++++.+++++++++.||||||||++|+++++.. ..+++|++||++|+.|+.++++.
T Consensus 16 ~~~l~~-~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~ 94 (460)
T PRK11776 16 LANLNE-LGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRR 94 (460)
T ss_pred HHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHH
Confidence 456666 89999999999999999999999999999999999999888752 34799999999999999998886
Q ss_pred c-----CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHH
Q 037567 76 R-----GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYK 150 (374)
Q Consensus 76 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~ 150 (374)
+ +..+..+.++....... ......++|+|+||+++..++.. ....+.+++++|+||||++.+.++. .
T Consensus 95 ~~~~~~~~~v~~~~Gg~~~~~~~-~~l~~~~~IvV~Tp~rl~~~l~~--~~~~l~~l~~lViDEad~~l~~g~~-----~ 166 (460)
T PRK11776 95 LARFIPNIKVLTLCGGVPMGPQI-DSLEHGAHIIVGTPGRILDHLRK--GTLDLDALNTLVLDEADRMLDMGFQ-----D 166 (460)
T ss_pred HHhhCCCcEEEEEECCCChHHHH-HHhcCCCCEEEEChHHHHHHHHc--CCccHHHCCEEEEECHHHHhCcCcH-----H
Confidence 5 34444555544433322 33346789999999999776554 3345678899999999999887653 3
Q ss_pred HHHHHHHhcC-CCCeeEEEeecCcccHHHHHHhcCCCCCeEEEecc-CCCceeEEEEeecCCcchHHHHHHHHHHhhcCC
Q 037567 151 QLDKLRTFLL-GVPFVALTATATEKVRIDIINSLKLKNPYVTIASF-DRKNLFYGVKVINRGQSFVDELVQEILKSVAGA 228 (374)
Q Consensus 151 ~~~~~~~~~~-~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (374)
.+..+....+ ..++++||||+++.... +...+...+..+..... ....+...+ +........+.+..++... ..
T Consensus 167 ~l~~i~~~~~~~~q~ll~SAT~~~~~~~-l~~~~~~~~~~i~~~~~~~~~~i~~~~--~~~~~~~k~~~l~~ll~~~-~~ 242 (460)
T PRK11776 167 AIDAIIRQAPARRQTLLFSATYPEGIAA-ISQRFQRDPVEVKVESTHDLPAIEQRF--YEVSPDERLPALQRLLLHH-QP 242 (460)
T ss_pred HHHHHHHhCCcccEEEEEEecCcHHHHH-HHHHhcCCCEEEEECcCCCCCCeeEEE--EEeCcHHHHHHHHHHHHhc-CC
Confidence 4444444444 57899999999876543 33333222222322222 222222222 2222222445555555543 56
Q ss_pred CcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCCC
Q 037567 229 GSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKT 308 (374)
Q Consensus 229 ~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s 308 (374)
+++||||+++..++.+++.|.+.++.+..+||+++..+|+.+++.|++|+.+|||||+.+++|+|+|++++||+++.|.+
T Consensus 243 ~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~ 322 (460)
T PRK11776 243 ESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARD 322 (460)
T ss_pred CceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhccCCCCCCceEEEEEeeccCCCcccce
Q 037567 309 LESYYQESGRCGRDGIASVCWLYYARSNFAKGDFY 343 (374)
Q Consensus 309 ~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~ 343 (374)
+..|+||+||+||.|..|.+++++.+.|...++.+
T Consensus 323 ~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i 357 (460)
T PRK11776 323 PEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAI 357 (460)
T ss_pred HhHhhhhcccccCCCCcceEEEEEchhHHHHHHHH
Confidence 99999999999999999999999999876554443
No 12
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.3e-52 Score=384.28 Aligned_cols=331 Identities=20% Similarity=0.285 Sum_probs=253.4
Q ss_pred ChhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcccccc------------CCcEEEEcchHHHHHH
Q 037567 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVT------------GKTALVVSPLISLMQD 68 (374)
Q Consensus 1 l~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~------------~~~~lil~P~~~l~~q 68 (374)
|.++|.+ +||.+|+|+|.++++.+++++++++.||||||||++|+++++.. ..++||++||++|+.|
T Consensus 12 l~~~l~~-~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Q 90 (456)
T PRK10590 12 ILRAVAE-QGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQ 90 (456)
T ss_pred HHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHH
Confidence 3567777 89999999999999999999999999999999999999987642 2369999999999999
Q ss_pred HHHHHHHc----CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCc
Q 037567 69 QVMSLKQR----GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHD 144 (374)
Q Consensus 69 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~ 144 (374)
+.+.+..+ ++....+.++..... ......+.++|+|+||++|..+... ....+.++++||+||||++.++++.
T Consensus 91 i~~~~~~~~~~~~~~~~~~~gg~~~~~-~~~~l~~~~~IiV~TP~rL~~~~~~--~~~~l~~v~~lViDEah~ll~~~~~ 167 (456)
T PRK10590 91 IGENVRDYSKYLNIRSLVVFGGVSINP-QMMKLRGGVDVLVATPGRLLDLEHQ--NAVKLDQVEILVLDEADRMLDMGFI 167 (456)
T ss_pred HHHHHHHHhccCCCEEEEEECCcCHHH-HHHHHcCCCcEEEEChHHHHHHHHc--CCcccccceEEEeecHHHHhccccH
Confidence 99998865 344444444433322 2223446789999999998766443 3345678999999999999887643
Q ss_pred chHHHHHHHHHHHhcC-CCCeeEEEeecCcccHHHHHHhcCCCCCeEEEecc--CCCceeEEEEeecCCcchHHHHHHHH
Q 037567 145 FRLEYKQLDKLRTFLL-GVPFVALTATATEKVRIDIINSLKLKNPYVTIASF--DRKNLFYGVKVINRGQSFVDELVQEI 221 (374)
Q Consensus 145 ~~~~~~~~~~~~~~~~-~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (374)
..+..+...++ ..+.+++|||++..... +...+...+..+..... ....+...+... ......+++..+
T Consensus 168 -----~~i~~il~~l~~~~q~l~~SAT~~~~~~~-l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~--~~~~k~~~l~~l 239 (456)
T PRK10590 168 -----HDIRRVLAKLPAKRQNLLFSATFSDDIKA-LAEKLLHNPLEIEVARRNTASEQVTQHVHFV--DKKRKRELLSQM 239 (456)
T ss_pred -----HHHHHHHHhCCccCeEEEEeCCCcHHHHH-HHHHHcCCCeEEEEecccccccceeEEEEEc--CHHHHHHHHHHH
Confidence 33333444443 56799999999876543 33333333322322211 122222222222 222334555555
Q ss_pred HHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEE
Q 037567 222 LKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301 (374)
Q Consensus 222 ~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi 301 (374)
+.. ....++||||+++..++.+++.|...++.+..+||+++..+|..+++.|++|+++|||||+++++|+|+|++++||
T Consensus 240 ~~~-~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI 318 (456)
T PRK10590 240 IGK-GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVV 318 (456)
T ss_pred HHc-CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEE
Confidence 544 3567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCChhHHHHhhccCCCCCCceEEEEEeeccCCCccccee
Q 037567 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYC 344 (374)
Q Consensus 302 ~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~ 344 (374)
++++|.++.+|+||+||+||.|..|.+++++...|...+..+.
T Consensus 319 ~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie 361 (456)
T PRK10590 319 NYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIE 361 (456)
T ss_pred EeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHH
Confidence 9999999999999999999999999999999988765554443
No 13
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.6e-52 Score=386.29 Aligned_cols=326 Identities=19% Similarity=0.272 Sum_probs=251.1
Q ss_pred ChhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcccccc-------------CCcEEEEcchHHHHH
Q 037567 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVT-------------GKTALVVSPLISLMQ 67 (374)
Q Consensus 1 l~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~-------------~~~~lil~P~~~l~~ 67 (374)
|+++|.+ +||..|+++|.++++.+++|+|+++.+|||||||++|+++++.. ..++||++||++|+.
T Consensus 98 l~~~l~~-~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~ 176 (475)
T PRK01297 98 LMHAIHD-LGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVV 176 (475)
T ss_pred HHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHH
Confidence 3567777 89999999999999999999999999999999999999987742 468999999999999
Q ss_pred HHHHHHHHc----CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccC
Q 037567 68 DQVMSLKQR----GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGH 143 (374)
Q Consensus 68 q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~ 143 (374)
|+.+.++.+ +..+..+.++..............++|+|+||++|..+... ....+.++++|||||+|++.+.++
T Consensus 177 Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~--~~~~l~~l~~lViDEah~l~~~~~ 254 (475)
T PRK01297 177 QIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQR--GEVHLDMVEVMVLDEADRMLDMGF 254 (475)
T ss_pred HHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHc--CCcccccCceEEechHHHHHhccc
Confidence 999988765 45555555544433333444456789999999998765443 344567899999999999987654
Q ss_pred cchHHHHHHHHHHHhcC---CCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCC--CceeEEEEeecCCcchHHHHH
Q 037567 144 DFRLEYKQLDKLRTFLL---GVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDR--KNLFYGVKVINRGQSFVDELV 218 (374)
Q Consensus 144 ~~~~~~~~~~~~~~~~~---~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 218 (374)
. ..+..+....+ +.+++++|||.+..... +...+...+..+....... ......+.... .......+
T Consensus 255 ~-----~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~k~~~l 326 (475)
T PRK01297 255 I-----PQVRQIIRQTPRKEERQTLLFSATFTDDVMN-LAKQWTTDPAIVEIEPENVASDTVEQHVYAVA--GSDKYKLL 326 (475)
T ss_pred H-----HHHHHHHHhCCCCCCceEEEEEeecCHHHHH-HHHHhccCCEEEEeccCcCCCCcccEEEEEec--chhHHHHH
Confidence 2 33344444332 46899999998876553 3333333332222221111 12222222211 22234455
Q ss_pred HHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCcc
Q 037567 219 QEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298 (374)
Q Consensus 219 ~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~ 298 (374)
..++.. ....++||||+++..++.+++.|.+.++.+..+||+++.++|.++++.|++|++++||||+++++|+|+|+++
T Consensus 327 ~~ll~~-~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~ 405 (475)
T PRK01297 327 YNLVTQ-NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGIS 405 (475)
T ss_pred HHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCC
Confidence 555544 2457999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCChhHHHHhhccCCCCCCceEEEEEeeccCCC
Q 037567 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338 (374)
Q Consensus 299 ~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 338 (374)
+||++++|.|..+|+||+||+||.|..|.+++++..+|..
T Consensus 406 ~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~ 445 (475)
T PRK01297 406 HVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAF 445 (475)
T ss_pred EEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHH
Confidence 9999999999999999999999999999999999887643
No 14
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5e-52 Score=386.76 Aligned_cols=331 Identities=17% Similarity=0.190 Sum_probs=251.5
Q ss_pred ChhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcccccc-------------CCcEEEEcchHHHHH
Q 037567 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVT-------------GKTALVVSPLISLMQ 67 (374)
Q Consensus 1 l~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~-------------~~~~lil~P~~~l~~ 67 (374)
|+++|.+ +||..|+|+|.++++.+++++|+++.||||||||++|+++++.. ..++||++|+++|+.
T Consensus 20 l~~~L~~-~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~ 98 (572)
T PRK04537 20 LLAGLES-AGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAI 98 (572)
T ss_pred HHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHH
Confidence 3567777 89999999999999999999999999999999999999887641 368999999999999
Q ss_pred HHHHHHHHcC----CceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccC
Q 037567 68 DQVMSLKQRG----INAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGH 143 (374)
Q Consensus 68 q~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~ 143 (374)
|+.+.+..++ +.+..+.++..... ........++|+|+||++|..++... ..+.+..+++|||||+|++.++++
T Consensus 99 Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~-q~~~l~~~~dIiV~TP~rL~~~l~~~-~~~~l~~v~~lViDEAh~lld~gf 176 (572)
T PRK04537 99 QIHKDAVKFGADLGLRFALVYGGVDYDK-QRELLQQGVDVIIATPGRLIDYVKQH-KVVSLHACEICVLDEADRMFDLGF 176 (572)
T ss_pred HHHHHHHHHhccCCceEEEEECCCCHHH-HHHHHhCCCCEEEECHHHHHHHHHhc-cccchhheeeeEecCHHHHhhcch
Confidence 9999988763 44555555443332 23334456899999999987665431 123456788999999999987664
Q ss_pred cchHHHHHHHHHHHhcC---CCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccC--CCceeEEEEeecCCcchHHHHH
Q 037567 144 DFRLEYKQLDKLRTFLL---GVPFVALTATATEKVRIDIINSLKLKNPYVTIASFD--RKNLFYGVKVINRGQSFVDELV 218 (374)
Q Consensus 144 ~~~~~~~~~~~~~~~~~---~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 218 (374)
. ..+..+...++ ..++++||||++..........+.. +..+...... ...+... ............+
T Consensus 177 ~-----~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~-p~~i~v~~~~~~~~~i~q~--~~~~~~~~k~~~L 248 (572)
T PRK04537 177 I-----KDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNE-PEKLVVETETITAARVRQR--IYFPADEEKQTLL 248 (572)
T ss_pred H-----HHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcC-CcEEEeccccccccceeEE--EEecCHHHHHHHH
Confidence 3 33344444444 5789999999988765433333322 2222221111 1122221 1122222233444
Q ss_pred HHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCcc
Q 037567 219 QEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298 (374)
Q Consensus 219 ~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~ 298 (374)
..++.. ..+.++||||+++..++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 249 ~~ll~~-~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~ 327 (572)
T PRK04537 249 LGLLSR-SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVK 327 (572)
T ss_pred HHHHhc-ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCC
Confidence 444443 3578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCChhHHHHhhccCCCCCCceEEEEEeeccCCCcccce
Q 037567 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFY 343 (374)
Q Consensus 299 ~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~ 343 (374)
+||+++.|.+..+|+||+||+||.|..|.+++|+...+...+..+
T Consensus 328 ~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i 372 (572)
T PRK04537 328 YVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDI 372 (572)
T ss_pred EEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHH
Confidence 999999999999999999999999999999999988765443333
No 15
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=6.9e-52 Score=379.15 Aligned_cols=331 Identities=20% Similarity=0.250 Sum_probs=256.7
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcccccc----------CCcEEEEcchHHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVT----------GKTALVVSPLISLMQDQVM 71 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~----------~~~~lil~P~~~l~~q~~~ 71 (374)
.++|.+ +||.+|+++|.++++.+++++++++.||||+|||++|+++++.. ..++||++|+++|+.|+.+
T Consensus 13 ~~~l~~-~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~ 91 (434)
T PRK11192 13 LEALQD-KGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVAD 91 (434)
T ss_pred HHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHH
Confidence 466777 89999999999999999999999999999999999999887641 3689999999999999988
Q ss_pred HHHHc----CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchH
Q 037567 72 SLKQR----GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRL 147 (374)
Q Consensus 72 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~ 147 (374)
.+..+ +..+..+.++...... .....++++|+|+||++|..++.. ..+...++++||+||||++.++++.
T Consensus 92 ~~~~l~~~~~~~v~~~~gg~~~~~~-~~~l~~~~~IlV~Tp~rl~~~~~~--~~~~~~~v~~lViDEah~~l~~~~~--- 165 (434)
T PRK11192 92 QARELAKHTHLDIATITGGVAYMNH-AEVFSENQDIVVATPGRLLQYIKE--ENFDCRAVETLILDEADRMLDMGFA--- 165 (434)
T ss_pred HHHHHHccCCcEEEEEECCCCHHHH-HHHhcCCCCEEEEChHHHHHHHHc--CCcCcccCCEEEEECHHHHhCCCcH---
Confidence 87764 4555555554443332 233445689999999998766443 3344677899999999999887643
Q ss_pred HHHHHHHHHHhc-CCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCC--CceeEEEEeecCCcchHHHHHHHHHHh
Q 037567 148 EYKQLDKLRTFL-LGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDR--KNLFYGVKVINRGQSFVDELVQEILKS 224 (374)
Q Consensus 148 ~~~~~~~~~~~~-~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (374)
..+..+.... ...+.++||||+.......+...+...+..+....... ..+... ...........+++..+++.
T Consensus 166 --~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~-~~~~~~~~~k~~~l~~l~~~ 242 (434)
T PRK11192 166 --QDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQW-YYRADDLEHKTALLCHLLKQ 242 (434)
T ss_pred --HHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEE-EEEeCCHHHHHHHHHHHHhc
Confidence 2223332222 35689999999987655566665543333332222211 122211 11222234455666666654
Q ss_pred hcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEEC
Q 037567 225 VAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYG 304 (374)
Q Consensus 225 ~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~ 304 (374)
...+++||||+++..++.+++.|.+.++.+..+||+++..+|..+++.|++|+++|||||+++++|+|+|++++||+++
T Consensus 243 -~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d 321 (434)
T PRK11192 243 -PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFD 321 (434)
T ss_pred -CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEEC
Confidence 3568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHhhccCCCCCCceEEEEEeeccCCCcccce
Q 037567 305 CPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFY 343 (374)
Q Consensus 305 ~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~ 343 (374)
+|.+...|+||+||+||.|..|.++++++..|...+..+
T Consensus 322 ~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i 360 (434)
T PRK11192 322 MPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKI 360 (434)
T ss_pred CCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHH
Confidence 999999999999999999999999999988876555443
No 16
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-52 Score=382.39 Aligned_cols=330 Identities=25% Similarity=0.347 Sum_probs=263.2
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcccccc-------CCc-EEEEcchHHHHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVT-------GKT-ALVVSPLISLMQDQVMSL 73 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~-------~~~-~lil~P~~~l~~q~~~~~ 73 (374)
.+++.+ .||..|+|+|.+++|.++.|+|++..|+||||||.+|.+|++.. ... +||++|||+|+.|+.+.+
T Consensus 41 l~~l~~-~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~ 119 (513)
T COG0513 41 LQALKD-LGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEEL 119 (513)
T ss_pred HHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHH
Confidence 567788 89999999999999999999999999999999999999998763 112 899999999999999998
Q ss_pred HHcC-----CceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHH
Q 037567 74 KQRG-----INAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLE 148 (374)
Q Consensus 74 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~ 148 (374)
..++ +.+..+.++............ +++|+|+||+++.+++.. ..+.+.++.++|+|||+.+.+.|+.
T Consensus 120 ~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~-~~~ivVaTPGRllD~i~~--~~l~l~~v~~lVlDEADrmLd~Gf~---- 192 (513)
T COG0513 120 RKLGKNLGGLRVAVVYGGVSIRKQIEALKR-GVDIVVATPGRLLDLIKR--GKLDLSGVETLVLDEADRMLDMGFI---- 192 (513)
T ss_pred HHHHhhcCCccEEEEECCCCHHHHHHHHhc-CCCEEEECccHHHHHHHc--CCcchhhcCEEEeccHhhhhcCCCH----
Confidence 8653 444556666555555544444 599999999999988776 3677889999999999999998764
Q ss_pred HHHHHHHHHhcC-CCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccC----CCceeEEEEeecCCcchHHHHHHHHHH
Q 037567 149 YKQLDKLRTFLL-GVPFVALTATATEKVRIDIINSLKLKNPYVTIASFD----RKNLFYGVKVINRGQSFVDELVQEILK 223 (374)
Q Consensus 149 ~~~~~~~~~~~~-~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (374)
..+..+....+ +.+.++||||++.... .+...+-..+..+...... ...+...+..... .....+++..+++
T Consensus 193 -~~i~~I~~~~p~~~qtllfSAT~~~~i~-~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~-~~~k~~~L~~ll~ 269 (513)
T COG0513 193 -DDIEKILKALPPDRQTLLFSATMPDDIR-ELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVES-EEEKLELLLKLLK 269 (513)
T ss_pred -HHHHHHHHhCCcccEEEEEecCCCHHHH-HHHHHHccCCcEEEEccccccccccCceEEEEEeCC-HHHHHHHHHHHHh
Confidence 45555555554 6899999999999644 3444333333333333122 2222222222222 2236667777777
Q ss_pred hhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEE
Q 037567 224 SVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHY 303 (374)
Q Consensus 224 ~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~ 303 (374)
.. ...++||||+++..++.++..|...|+.+..+||+++..+|.+.++.|++|+.+|||||+.+++|+|+|++++||+|
T Consensus 270 ~~-~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Viny 348 (513)
T COG0513 270 DE-DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINY 348 (513)
T ss_pred cC-CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEc
Confidence 64 45579999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHhhccCCCCCCceEEEEEeecc-CCCcccce
Q 037567 304 GCPKTLESYYQESGRCGRDGIASVCWLYYARS-NFAKGDFY 343 (374)
Q Consensus 304 ~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~-~~~~~~~~ 343 (374)
+.|.+++.|+||+||+||.|..|.++.|+.+. |...+..+
T Consensus 349 D~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~i 389 (513)
T COG0513 349 DLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRI 389 (513)
T ss_pred cCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHH
Confidence 99999999999999999999999999999875 54444433
No 17
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=3.2e-51 Score=383.31 Aligned_cols=329 Identities=23% Similarity=0.284 Sum_probs=253.5
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc------cCCcEEEEcchHHHHHHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV------TGKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~------~~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
.++|.+ +||.+|+|+|.++++.+++++++++.||||||||++|.++++. ..+++||++||++|+.|+.+.+..
T Consensus 18 l~al~~-~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~ 96 (629)
T PRK11634 18 LEALND-LGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTD 96 (629)
T ss_pred HHHHHH-CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHH
Confidence 467777 8999999999999999999999999999999999999888764 356899999999999999988876
Q ss_pred c-----CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHH
Q 037567 76 R-----GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYK 150 (374)
Q Consensus 76 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~ 150 (374)
+ +..+..++++.... .+.......++|+|+||+++.+++.. ..+.+.++.+||+||||.+.++++. .
T Consensus 97 ~~~~~~~i~v~~~~gG~~~~-~q~~~l~~~~~IVVgTPgrl~d~l~r--~~l~l~~l~~lVlDEAd~ml~~gf~-----~ 168 (629)
T PRK11634 97 FSKHMRGVNVVALYGGQRYD-VQLRALRQGPQIVVGTPGRLLDHLKR--GTLDLSKLSGLVLDEADEMLRMGFI-----E 168 (629)
T ss_pred HHhhcCCceEEEEECCcCHH-HHHHHhcCCCCEEEECHHHHHHHHHc--CCcchhhceEEEeccHHHHhhcccH-----H
Confidence 5 45554454443322 22333445689999999998766544 3445678899999999999887653 3
Q ss_pred HHHHHHHhcC-CCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccC--CCceeEEEEeecCCcchHHHHHHHHHHhhcC
Q 037567 151 QLDKLRTFLL-GVPFVALTATATEKVRIDIINSLKLKNPYVTIASFD--RKNLFYGVKVINRGQSFVDELVQEILKSVAG 227 (374)
Q Consensus 151 ~~~~~~~~~~-~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (374)
.+..+...++ ..+.++||||++..... +...+...+..+...... ...+...+ +........+.+..++.. ..
T Consensus 169 di~~Il~~lp~~~q~llfSAT~p~~i~~-i~~~~l~~~~~i~i~~~~~~~~~i~q~~--~~v~~~~k~~~L~~~L~~-~~ 244 (629)
T PRK11634 169 DVETIMAQIPEGHQTALFSATMPEAIRR-ITRRFMKEPQEVRIQSSVTTRPDISQSY--WTVWGMRKNEALVRFLEA-ED 244 (629)
T ss_pred HHHHHHHhCCCCCeEEEEEccCChhHHH-HHHHHcCCCeEEEccCccccCCceEEEE--EEechhhHHHHHHHHHHh-cC
Confidence 3444444444 67899999999887653 333333333333222221 12222111 111122233444444444 24
Q ss_pred CCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCC
Q 037567 228 AGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPK 307 (374)
Q Consensus 228 ~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~ 307 (374)
..++||||+++..++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.
T Consensus 245 ~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~ 324 (629)
T PRK11634 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPM 324 (629)
T ss_pred CCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhhccCCCCCCceEEEEEeeccCCCcccce
Q 037567 308 TLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFY 343 (374)
Q Consensus 308 s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~ 343 (374)
+...|+||+||+||.|+.|.+++++.+.+...++.+
T Consensus 325 ~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~i 360 (629)
T PRK11634 325 DSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 (629)
T ss_pred CHHHHHHHhccccCCCCcceEEEEechHHHHHHHHH
Confidence 999999999999999999999999998775555544
No 18
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.7e-51 Score=325.85 Aligned_cols=328 Identities=19% Similarity=0.260 Sum_probs=265.1
Q ss_pred cCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcccccc------CCcEEEEcchHHHHHHHHHHHHHcC----C
Q 037567 9 FGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVT------GKTALVVSPLISLMQDQVMSLKQRG----I 78 (374)
Q Consensus 9 ~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~------~~~~lil~P~~~l~~q~~~~~~~~~----~ 78 (374)
+||++|..+|..|++++++|++++..|..|+|||.+|.+.+++. .-++++++|||+|+.|..+.+...| +
T Consensus 45 yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnv 124 (400)
T KOG0328|consen 45 YGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNV 124 (400)
T ss_pred hccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccc
Confidence 79999999999999999999999999999999999988877762 5679999999999999999998775 4
Q ss_pred ceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHh
Q 037567 79 NAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTF 158 (374)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~ 158 (374)
+...+.++..-.+...... .+.+++.+||++..++..+ ..+.-.++.++|+||++.+.+.|+. .++-.+...
T Consensus 125 q~hacigg~n~gedikkld-~G~hvVsGtPGrv~dmikr--~~L~tr~vkmlVLDEaDemL~kgfk-----~Qiydiyr~ 196 (400)
T KOG0328|consen 125 QCHACIGGKNLGEDIKKLD-YGQHVVSGTPGRVLDMIKR--RSLRTRAVKMLVLDEADEMLNKGFK-----EQIYDIYRY 196 (400)
T ss_pred eEEEEecCCccchhhhhhc-ccceEeeCCCchHHHHHHh--ccccccceeEEEeccHHHHHHhhHH-----HHHHHHHHh
Confidence 4444444444444444433 6789999999999888776 6666788999999999999987654 555566666
Q ss_pred cC-CCCeeEEEeecCcccHHHHHHhcCCCCCeEEE-eccCCCce-eEEEEeecCCcchHHHHHHHHHHhhcCCCcEEEEe
Q 037567 159 LL-GVPFVALTATATEKVRIDIINSLKLKNPYVTI-ASFDRKNL-FYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYC 235 (374)
Q Consensus 159 ~~-~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~ 235 (374)
+| +.|++++|||.+.........+ ..++.... .......- ...+..-.....+.-+.+.++...+ .-.+++|||
T Consensus 197 lp~~~Qvv~~SATlp~eilemt~kf--mtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~L-tItQavIFc 273 (400)
T KOG0328|consen 197 LPPGAQVVLVSATLPHEILEMTEKF--MTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTL-TITQAVIFC 273 (400)
T ss_pred CCCCceEEEEeccCcHHHHHHHHHh--cCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhh-ehheEEEEe
Confidence 65 8999999999999887543333 34443332 22222111 1112222333455556666666665 567899999
Q ss_pred cchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCCChhHHHHh
Q 037567 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQE 315 (374)
Q Consensus 236 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~ 315 (374)
+++..+..+.+.+++..+.+..+||++..++|..++++|+.|+.+||++|+..++|+|+|.+++||+|++|.+...|+||
T Consensus 274 nTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHR 353 (400)
T KOG0328|consen 274 NTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHR 353 (400)
T ss_pred cccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCceEEEEEeeccCCCcccceeccc
Q 037567 316 SGRCGRDGIASVCWLYYARSNFAKGDFYCGES 347 (374)
Q Consensus 316 ~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~ 347 (374)
+||.||+|..|.++.|+..+|++.++.+.+..
T Consensus 354 IGRSGRFGRkGvainFVk~~d~~~lrdieq~y 385 (400)
T KOG0328|consen 354 IGRSGRFGRKGVAINFVKSDDLRILRDIEQYY 385 (400)
T ss_pred hccccccCCcceEEEEecHHHHHHHHHHHHHH
Confidence 99999999999999999999987777665443
No 19
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-50 Score=342.82 Aligned_cols=331 Identities=23% Similarity=0.275 Sum_probs=270.8
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcccccc---------C--CcEEEEcchHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVT---------G--KTALVVSPLISLMQDQV 70 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~---------~--~~~lil~P~~~l~~q~~ 70 (374)
.+++.. .||..++|.|..++|.++.++|+++.++||||||++|++|++.. . --++|++|||+|+.|..
T Consensus 18 ~~~l~~-~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~ 96 (567)
T KOG0345|consen 18 LEALDE-SGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIR 96 (567)
T ss_pred HHHHHh-cCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHH
Confidence 456777 89999999999999999999999999999999999999998751 2 25899999999999988
Q ss_pred HHHHHc-----CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcc
Q 037567 71 MSLKQR-----GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDF 145 (374)
Q Consensus 71 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~ 145 (374)
+-...| .++...+.++.+..+........+++|+|+||++|.+++++....+.+.+++++|+|||+++.+.|++
T Consensus 97 ~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe- 175 (567)
T KOG0345|consen 97 EVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFE- 175 (567)
T ss_pred HHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHH-
Confidence 887765 45566777776666666777778899999999999999888667777789999999999999999987
Q ss_pred hHHHHHHHHHHHhcC-CCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCC-----CceeEEEEeecCCcchHHHHHH
Q 037567 146 RLEYKQLDKLRTFLL-GVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDR-----KNLFYGVKVINRGQSFVDELVQ 219 (374)
Q Consensus 146 ~~~~~~~~~~~~~~~-~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 219 (374)
..++.++..+| +++.=+||||...+... +...++.++..+...... +.+...+... ........+-
T Consensus 176 ----~~~n~ILs~LPKQRRTGLFSATq~~~v~d--L~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~--~a~eK~~~lv 247 (567)
T KOG0345|consen 176 ----ASVNTILSFLPKQRRTGLFSATQTQEVED--LARAGLRNPVRVSVKEKSKSATPSSLALEYLVC--EADEKLSQLV 247 (567)
T ss_pred ----HHHHHHHHhcccccccccccchhhHHHHH--HHHhhccCceeeeecccccccCchhhcceeeEe--cHHHHHHHHH
Confidence 67777877777 57788999999988765 666777777644332222 1122222222 2222334444
Q ss_pred HHHHhhcCCCcEEEEecchhHHHHHHHHHHHc--CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCc
Q 037567 220 EILKSVAGAGSIIVYCMTIKDVEEISKALKQL--GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297 (374)
Q Consensus 220 ~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~ 297 (374)
+++.. ...+++|||+++...++..+..+... +..+..+||.++.+.|..+++.|.+..-.+++||+.+.+|+|+|++
T Consensus 248 ~~L~~-~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~i 326 (567)
T KOG0345|consen 248 HLLNN-NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGI 326 (567)
T ss_pred HHHhc-cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCc
Confidence 44444 46789999999999999999998874 5678999999999999999999999888899999999999999999
Q ss_pred cEEEEECCCCChhHHHHhhccCCCCCCceEEEEEeeccCCCcccce
Q 037567 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFY 343 (374)
Q Consensus 298 ~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~ 343 (374)
++||++|+|.++..|+||+||++|.|..|.+++|+.+.+..+..++
T Consensus 327 D~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl 372 (567)
T KOG0345|consen 327 DLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFL 372 (567)
T ss_pred eEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHH
Confidence 9999999999999999999999999999999999999776555444
No 20
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=3e-50 Score=366.11 Aligned_cols=330 Identities=18% Similarity=0.242 Sum_probs=246.3
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc------cCCcEEEEcchHHHHHHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV------TGKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~------~~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
++++.. +||.+|+|+|.++++.+++++++++.||||||||++|+++++. ...++||++|+++|+.|+.+.+..
T Consensus 40 ~~~l~~-~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~ 118 (401)
T PTZ00424 40 LRGIYS-YGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLA 118 (401)
T ss_pred HHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHH
Confidence 456766 8999999999999999999999999999999999999888664 356799999999999999988877
Q ss_pred cCC----ceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHH
Q 037567 76 RGI----NAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQ 151 (374)
Q Consensus 76 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~ 151 (374)
++. ......++..... ........++|+|+||+++..++.. ....+.+++++|+||+|++.+.+.. ..
T Consensus 119 ~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~Ivv~Tp~~l~~~l~~--~~~~l~~i~lvViDEah~~~~~~~~-----~~ 190 (401)
T PTZ00424 119 LGDYLKVRCHACVGGTVVRD-DINKLKAGVHMVVGTPGRVYDMIDK--RHLRVDDLKLFILDEADEMLSRGFK-----GQ 190 (401)
T ss_pred HhhhcCceEEEEECCcCHHH-HHHHHcCCCCEEEECcHHHHHHHHh--CCcccccccEEEEecHHHHHhcchH-----HH
Confidence 642 2222233222222 2223334579999999998765543 2345678999999999999876543 22
Q ss_pred HHHHHHh-cCCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEecc--CCCceeEEEEeecCCcchHHHHHHHHHHhhcCC
Q 037567 152 LDKLRTF-LLGVPFVALTATATEKVRIDIINSLKLKNPYVTIASF--DRKNLFYGVKVINRGQSFVDELVQEILKSVAGA 228 (374)
Q Consensus 152 ~~~~~~~-~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (374)
+..+... .++.+++++|||++..... +...+...+..+..... ....+...... ..........+..+.+.. ..
T Consensus 191 ~~~i~~~~~~~~~~i~~SAT~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-~~ 267 (401)
T PTZ00424 191 IYDVFKKLPPDVQVALFSATMPNEILE-LTTKFMRDPKRILVKKDELTLEGIRQFYVA-VEKEEWKFDTLCDLYETL-TI 267 (401)
T ss_pred HHHHHhhCCCCcEEEEEEecCCHHHHH-HHHHHcCCCEEEEeCCCCcccCCceEEEEe-cChHHHHHHHHHHHHHhc-CC
Confidence 3333333 3468899999999876543 22222222222221111 11121111111 122222334444444432 46
Q ss_pred CcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCCC
Q 037567 229 GSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKT 308 (374)
Q Consensus 229 ~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s 308 (374)
.++||||+++..++.+++.|.+.++.+..+||+++.++|..+++.|++|+++|||||+++++|+|+|++++||++++|.+
T Consensus 268 ~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s 347 (401)
T PTZ00424 268 TQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPAS 347 (401)
T ss_pred CeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhccCCCCCCceEEEEEeeccCCCcccce
Q 037567 309 LESYYQESGRCGRDGIASVCWLYYARSNFAKGDFY 343 (374)
Q Consensus 309 ~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~ 343 (374)
..+|+||+||+||.|..|.|++++++.+...+..+
T Consensus 348 ~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~ 382 (401)
T PTZ00424 348 PENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEI 382 (401)
T ss_pred HHHEeecccccccCCCCceEEEEEcHHHHHHHHHH
Confidence 99999999999999999999999998876655544
No 21
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-50 Score=338.71 Aligned_cols=340 Identities=23% Similarity=0.337 Sum_probs=278.3
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc------------cCCcEEEEcchHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV------------TGKTALVVSPLISLMQDQ 69 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~------------~~~~~lil~P~~~l~~q~ 69 (374)
.+++++ .||.+|+|+|+++||-+++|.+++-+|.||+|||++|+++.+. .++.+|+++||++|+.|+
T Consensus 232 menIkK-~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqi 310 (629)
T KOG0336|consen 232 MENIKK-TGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQI 310 (629)
T ss_pred HHHHHh-ccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHH
Confidence 356777 8999999999999999999999999999999999999988653 267899999999999999
Q ss_pred HHHHHHc---CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcch
Q 037567 70 VMSLKQR---GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFR 146 (374)
Q Consensus 70 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~ 146 (374)
.-+..++ |.....+.++... ..+.....++.+|+++||++|.++... ..+.+.++.++|+|||+.+.+.|++
T Consensus 311 e~e~~kysyng~ksvc~ygggnR-~eqie~lkrgveiiiatPgrlndL~~~--n~i~l~siTYlVlDEADrMLDMgFE-- 385 (629)
T KOG0336|consen 311 EGEVKKYSYNGLKSVCVYGGGNR-NEQIEDLKRGVEIIIATPGRLNDLQMD--NVINLASITYLVLDEADRMLDMGFE-- 385 (629)
T ss_pred HhHHhHhhhcCcceEEEecCCCc-hhHHHHHhcCceEEeeCCchHhhhhhc--CeeeeeeeEEEEecchhhhhccccc--
Confidence 8887764 5554444444333 333445567789999999999988655 6677889999999999999998876
Q ss_pred HHHHHHH-HHHHhcCCCCeeEEEeecCcccHHHHHHhcCCCCCeEEE-eccCCCceeEE-EEeecCCcchHHHHHHHHHH
Q 037567 147 LEYKQLD-KLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTI-ASFDRKNLFYG-VKVINRGQSFVDELVQEILK 223 (374)
Q Consensus 147 ~~~~~~~-~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 223 (374)
-++. -++...|+.+.++.|||+++.... +....++++.+.. .+.+....... ...+...+....+.+..+.+
T Consensus 386 ---pqIrkilldiRPDRqtvmTSATWP~~Vrr--La~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~ 460 (629)
T KOG0336|consen 386 ---PQIRKILLDIRPDRQTVMTSATWPEGVRR--LAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVA 460 (629)
T ss_pred ---HHHHHHhhhcCCcceeeeecccCchHHHH--HHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHH
Confidence 3333 344566789999999999998865 4444455555443 33333222111 11233445555678888888
Q ss_pred hhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEE
Q 037567 224 SVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHY 303 (374)
Q Consensus 224 ~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~ 303 (374)
...+..++||||.++..++.|...|.-.|+.+..+||+....+|+..+++|++|+++|||+|+.+++|+|+|+++||++|
T Consensus 461 ~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~Ny 540 (629)
T KOG0336|consen 461 NMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNY 540 (629)
T ss_pred hcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeecc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHhhccCCCCCCceEEEEEeeccCCCcccceeccccchHH
Q 037567 304 GCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ 352 (374)
Q Consensus 304 ~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (374)
+.|.+.++|+||+||+||.|..|..+.++...|-...+.+++-++..++
T Consensus 541 DFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQ 589 (629)
T KOG0336|consen 541 DFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQ 589 (629)
T ss_pred CCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999888888876555444
No 22
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.5e-49 Score=341.67 Aligned_cols=325 Identities=26% Similarity=0.301 Sum_probs=260.1
Q ss_pred hHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc---------------cCCcEEEEcchHHHHH
Q 037567 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV---------------TGKTALVVSPLISLMQ 67 (374)
Q Consensus 3 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~---------------~~~~~lil~P~~~l~~ 67 (374)
+.+.+ .||.+|+|+|..++|-.++.+|+|..|.||||||.+|+++++. .++.+++++||++|++
T Consensus 258 ~~I~~-~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaq 336 (673)
T KOG0333|consen 258 SVIKK-PGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQ 336 (673)
T ss_pred HHHHh-cCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHH
Confidence 44555 8999999999999999999999999999999999999887662 3788999999999999
Q ss_pred HHHHHHHHc----CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccC
Q 037567 68 DQVMSLKQR----GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGH 143 (374)
Q Consensus 68 q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~ 143 (374)
|+.++-.++ |+++..+.++....+.. .....+|+|+|+||+.|.+.+.+ ..+.++.+.++|+|||+.+.+.|+
T Consensus 337 qIeeEt~kf~~~lg~r~vsvigg~s~EEq~-fqls~gceiviatPgrLid~Len--r~lvl~qctyvvldeadrmiDmgf 413 (673)
T KOG0333|consen 337 QIEEETNKFGKPLGIRTVSVIGGLSFEEQG-FQLSMGCEIVIATPGRLIDSLEN--RYLVLNQCTYVVLDEADRMIDMGF 413 (673)
T ss_pred HHHHHHHHhcccccceEEEEecccchhhhh-hhhhccceeeecCchHHHHHHHH--HHHHhccCceEeccchhhhhcccc
Confidence 999998876 44555555554444432 23455699999999999988777 566778899999999999998877
Q ss_pred cchHHHHHHHHHHHhcC------------------------C--CCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCC
Q 037567 144 DFRLEYKQLDKLRTFLL------------------------G--VPFVALTATATEKVRIDIINSLKLKNPYVTIASFDR 197 (374)
Q Consensus 144 ~~~~~~~~~~~~~~~~~------------------------~--~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (374)
+. ....++..++ . .+.++||||+++... .+...+...+..+.......
T Consensus 414 E~-----dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~ve-rlar~ylr~pv~vtig~~gk 487 (673)
T KOG0333|consen 414 EP-----DVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVE-RLARSYLRRPVVVTIGSAGK 487 (673)
T ss_pred cH-----HHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHH-HHHHHHhhCCeEEEeccCCC
Confidence 53 2222222221 1 468999999999876 45555554555555554444
Q ss_pred CceeEEEEeecCCcchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcC
Q 037567 198 KNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRD 277 (374)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 277 (374)
+.......+..-........+.++++.. ...++|||+|+++.++.+++.|.+.|+++..+||+.+.++|+..++.|++|
T Consensus 488 ~~~rveQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~ 566 (673)
T KOG0333|consen 488 PTPRVEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREG 566 (673)
T ss_pred CccchheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhc
Confidence 3333333333222233355555666653 578899999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEeccccccccccCccEEEEECCCCChhHHHHhhccCCCCCCceEEEEEeeccCCC
Q 037567 278 EIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338 (374)
Q Consensus 278 ~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 338 (374)
..+|+|||+++++|+|+|++.+||+|+++.+..+|.|||||+||.|+.|++++|+++.|-.
T Consensus 567 t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~ 627 (673)
T KOG0333|consen 567 TGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTA 627 (673)
T ss_pred CCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhH
Confidence 9999999999999999999999999999999999999999999999999999999998743
No 23
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2.7e-49 Score=375.53 Aligned_cols=371 Identities=45% Similarity=0.711 Sum_probs=328.4
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHHcCCceE
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGINAE 81 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 81 (374)
..++..+||...++|-|.+++.+++.|+++++.+|||.||+++|.+|++...+.++||.|..+|.++....+...++...
T Consensus 253 ~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~gitvVISPL~SLm~DQv~~L~~~~I~a~ 332 (941)
T KOG0351|consen 253 ELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLGGVTVVISPLISLMQDQVTHLSKKGIPAC 332 (941)
T ss_pred HHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccCCceEEeccHHHHHHHHHHhhhhcCccee
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCchh---hhhhhhcC--CeeEEEEcCcccccCchhhHHHHHhcC---ccEEEEeccchhhcccCcchHHHHHHH
Q 037567 82 FLGSAQTDSS---VQTKAETG--YFQLLFMTPEKACIIPISFWSKLLKAG---VCLFAVDEAHCISEWGHDFRLEYKQLD 153 (374)
Q Consensus 82 ~~~~~~~~~~---~~~~~~~~--~~~i~i~T~~~l~~~~~~~~~~~~~~~---~~~vviDE~h~~~~~~~~~~~~~~~~~ 153 (374)
.+.+.....+ .......+ .++|+..|||++............+.. +.++||||||.+.+||.+|++.+..+.
T Consensus 333 ~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~ 412 (941)
T KOG0351|consen 333 FLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLG 412 (941)
T ss_pred eccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHH
Confidence 8888776642 33333444 789999999998766444333334444 789999999999999999999999999
Q ss_pred HHHHhcCCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEEEeecCCcchHHHHHHHHHHhhcCCCcEEE
Q 037567 154 KLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIV 233 (374)
Q Consensus 154 ~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV 233 (374)
.++..+++.+++++|||.......+++..+++.++.+...+++++++.+.+....... ....+....+.....+.+||
T Consensus 413 ~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~~~--~~~~~~~~~~~~~~~~s~II 490 (941)
T KOG0351|consen 413 LLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTDKD--ALLDILEESKLRHPDQSGII 490 (941)
T ss_pred HHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEeccCcc--chHHHHHHhhhcCCCCCeEE
Confidence 9999999999999999999999999999999999999999999999999988766422 22233334445568899999
Q ss_pred EecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCCChhHHH
Q 037567 234 YCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYY 313 (374)
Q Consensus 234 f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~ 313 (374)
||.++.+++.++..|.+.+..+..+|+++++.+|..+-..|..++++|+++|-+.++|+|-|+++.||+++.|.|.+.|.
T Consensus 491 YC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YY 570 (941)
T KOG0351|consen 491 YCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYY 570 (941)
T ss_pred EeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCCCceEEEEEeeccCCCcccceeccccchHHHHH--HHHHHHHHHHHhhh-cccCC
Q 037567 314 QESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTA--IMESLLAAQRYCLL-TTCRR 374 (374)
Q Consensus 314 Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~-~~~~~ 374 (374)
|-+|||||.|....|++||...|+..++.++........... -..++.++.+||++ +.|||
T Consensus 571 QE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~~~~~~~~~~~~~~~l~~~~~yCen~t~crr 634 (941)
T KOG0351|consen 571 QEAGRAGRDGLPSSCVLLYGYADISELRRLLTSGNRLSGVKKFTRLLELVQVVTYCENETDCRR 634 (941)
T ss_pred HhccccCcCCCcceeEEecchhHHHHHHHHHHccccccchhhccchhhHHHHHHhhcCccchhH
Confidence 999999999999999999999999999998877744333333 68899999999995 79997
No 24
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.1e-48 Score=373.07 Aligned_cols=324 Identities=19% Similarity=0.243 Sum_probs=241.2
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc-----cCCcEEEEcchHHHHHHHHHHHHHc
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV-----TGKTALVVSPLISLMQDQVMSLKQR 76 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~-----~~~~~lil~P~~~l~~q~~~~~~~~ 76 (374)
.++|++ +||.+|+++|.++++.+.+|+|+++.+|||||||++|++|++. ...++||++|+++|+.|..+.++.+
T Consensus 26 ~~~L~~-~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l 104 (742)
T TIGR03817 26 VAALEA-AGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVREL 104 (742)
T ss_pred HHHHHH-cCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHh
Confidence 467777 8999999999999999999999999999999999999999875 2568999999999999999999887
Q ss_pred C---CceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccC-c-hhhHHHHHhcCccEEEEeccchhhc-ccCcchHHHH
Q 037567 77 G---INAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACII-P-ISFWSKLLKAGVCLFAVDEAHCISE-WGHDFRLEYK 150 (374)
Q Consensus 77 ~---~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~-~-~~~~~~~~~~~~~~vviDE~h~~~~-~~~~~~~~~~ 150 (374)
+ +.+..+.++..... . ......++|+++||+++... + ........+.++++||+||+|.+.+ .|......+.
T Consensus 105 ~~~~i~v~~~~Gdt~~~~-r-~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~~il~ 182 (742)
T TIGR03817 105 TLRGVRPATYDGDTPTEE-R-RWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVALVLR 182 (742)
T ss_pred ccCCeEEEEEeCCCCHHH-H-HHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHHHHHHHH
Confidence 4 44555555443322 2 22334579999999988532 1 1111233478999999999999864 3444444455
Q ss_pred HHHHHHHhc-CCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEEEeecCC----------------cch
Q 037567 151 QLDKLRTFL-LGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRG----------------QSF 213 (374)
Q Consensus 151 ~~~~~~~~~-~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~ 213 (374)
++.++.... .+.+++++|||.+++.. ....+...+..+ ......+.....+...... ...
T Consensus 183 rL~ri~~~~g~~~q~i~~SATi~n~~~--~~~~l~g~~~~~-i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~ 259 (742)
T TIGR03817 183 RLRRLCARYGASPVFVLASATTADPAA--AASRLIGAPVVA-VTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAE 259 (742)
T ss_pred HHHHHHHhcCCCCEEEEEecCCCCHHH--HHHHHcCCCeEE-ECCCCCCcCceEEEEecCCccccccccccccccchHHH
Confidence 555555443 35789999999998753 344433233222 2221111111111111110 011
Q ss_pred HHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHc--------CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEe
Q 037567 214 VDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQL--------GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVAT 285 (374)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t 285 (374)
..+++..++ ..+.++||||++++.++.+++.+++. +..+..+||+++.++|..++++|++|++++||||
T Consensus 260 ~~~~l~~l~---~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaT 336 (742)
T TIGR03817 260 AADLLADLV---AEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATT 336 (742)
T ss_pred HHHHHHHHH---HCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEEC
Confidence 223333333 35789999999999999999998764 5678899999999999999999999999999999
Q ss_pred ccccccccccCccEEEEECCCCChhHHHHhhccCCCCCCceEEEEEeec
Q 037567 286 MAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYAR 334 (374)
Q Consensus 286 ~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 334 (374)
+++++|+|+|++++||+++.|.+...|+||+||+||.|+.|.++++...
T Consensus 337 d~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~ 385 (742)
T TIGR03817 337 NALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARD 385 (742)
T ss_pred chHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCC
Confidence 9999999999999999999999999999999999999999999988763
No 25
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=3.7e-49 Score=337.16 Aligned_cols=332 Identities=22% Similarity=0.293 Sum_probs=265.8
Q ss_pred hHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc----------cCCcEEEEcchHHHHHHHHHH
Q 037567 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV----------TGKTALVVSPLISLMQDQVMS 72 (374)
Q Consensus 3 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~----------~~~~~lil~P~~~l~~q~~~~ 72 (374)
+++++ +||..+++.|...++.++.|++++..|.||+|||++|++|+.+ ..-.++|++|||+|+.|.+.+
T Consensus 95 kAi~~-~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~e 173 (543)
T KOG0342|consen 95 KAIKE-MGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAE 173 (543)
T ss_pred HHHHh-cCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHH
Confidence 57778 9999999999999999999999999999999999999999875 244699999999999999888
Q ss_pred HHHc-----CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchH
Q 037567 73 LKQR-----GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRL 147 (374)
Q Consensus 73 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~ 147 (374)
++.. ++.+.++.++............ +++|+|+||++|.+.+++... +...+.+++|+|||+++.+.|+.
T Consensus 174 ak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k-~~niliATPGRLlDHlqNt~~-f~~r~~k~lvlDEADrlLd~GF~--- 248 (543)
T KOG0342|consen 174 AKELLKYHESITVGIVIGGNNFSVEADKLVK-GCNILIATPGRLLDHLQNTSG-FLFRNLKCLVLDEADRLLDIGFE--- 248 (543)
T ss_pred HHHHHhhCCCcceEEEeCCccchHHHHHhhc-cccEEEeCCchHHhHhhcCCc-chhhccceeEeecchhhhhcccH---
Confidence 7653 5666777776666666665555 799999999999998887533 45566789999999999998865
Q ss_pred HHHHHHHHHHhc-CCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCC----CceeEEEEeecCCcchHHHHHHHHH
Q 037567 148 EYKQLDKLRTFL-LGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDR----KNLFYGVKVINRGQSFVDELVQEIL 222 (374)
Q Consensus 148 ~~~~~~~~~~~~-~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (374)
.-+..+...+ ...+.++||||.++....-..-.+.-....+....... ..+...+...+... . -.++..++
T Consensus 249 --~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~-~-f~ll~~~L 324 (543)
T KOG0342|consen 249 --EDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDS-R-FSLLYTFL 324 (543)
T ss_pred --HHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccc-h-HHHHHHHH
Confidence 3344444433 37889999999999887533334443222233222221 12222222223322 2 33445555
Q ss_pred HhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEE
Q 037567 223 KSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIH 302 (374)
Q Consensus 223 ~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~ 302 (374)
+......++||||++......+++.|....++|..+||+.+...|..+...|.+.+.-||+||+...+|+|+|++++|+.
T Consensus 325 Kk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ 404 (543)
T KOG0342|consen 325 KKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQ 404 (543)
T ss_pred HHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEE
Confidence 55445589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCChhHHHHhhccCCCCCCceEEEEEeeccCCCccccee
Q 037567 303 YGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYC 344 (374)
Q Consensus 303 ~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~ 344 (374)
+++|.++.+|+||+||++|.|..|.+++++.+.+...++.+-
T Consensus 405 ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 405 YDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred eCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh
Confidence 999999999999999999999999999999999987766653
No 26
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-49 Score=340.21 Aligned_cols=335 Identities=23% Similarity=0.279 Sum_probs=272.0
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcccccc---------CCcEEEEcchHHHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVT---------GKTALVVSPLISLMQDQVMS 72 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~---------~~~~lil~P~~~l~~q~~~~ 72 (374)
.+++.. +||..|+|+|..+||..+-|++++-+|.||||||.+|++|++.+ .-+|||++|||+|+-|+..-
T Consensus 193 Lka~~~-lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV 271 (691)
T KOG0338|consen 193 LKACST-LGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSV 271 (691)
T ss_pred HHHHHh-cCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHH
Confidence 345555 89999999999999999999999999999999999999998862 45799999999999987776
Q ss_pred HHHc----CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHH
Q 037567 73 LKQR----GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLE 148 (374)
Q Consensus 73 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~ 148 (374)
.++. .+.+++..++..-.. +.......|||+|+||++|.+++.+. ..+.+.++.++|+|||++|.+.|+.
T Consensus 272 ~~qlaqFt~I~~~L~vGGL~lk~-QE~~LRs~PDIVIATPGRlIDHlrNs-~sf~ldsiEVLvlDEADRMLeegFa---- 345 (691)
T KOG0338|consen 272 TKQLAQFTDITVGLAVGGLDLKA-QEAVLRSRPDIVIATPGRLIDHLRNS-PSFNLDSIEVLVLDEADRMLEEGFA---- 345 (691)
T ss_pred HHHHHhhccceeeeeecCccHHH-HHHHHhhCCCEEEecchhHHHHhccC-CCccccceeEEEechHHHHHHHHHH----
Confidence 6543 466666666554443 33445567999999999998877653 3566788999999999999997765
Q ss_pred HHHHHHHHHhcC-CCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCC-CceeEEEE---eecCCcchHHHHHHHHHH
Q 037567 149 YKQLDKLRTFLL-GVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDR-KNLFYGVK---VINRGQSFVDELVQEILK 223 (374)
Q Consensus 149 ~~~~~~~~~~~~-~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~ 223 (374)
..++++....+ +.|.++||||+...... +..+.+..|.......+. ........ ..+.........+..++.
T Consensus 346 -demnEii~lcpk~RQTmLFSATMteeVkd--L~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~ 422 (691)
T KOG0338|consen 346 -DEMNEIIRLCPKNRQTMLFSATMTEEVKD--LASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLIT 422 (691)
T ss_pred -HHHHHHHHhccccccceeehhhhHHHHHH--HHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHH
Confidence 67777777665 68999999999998764 555666666644443322 21111111 112333334555666666
Q ss_pred hhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEE
Q 037567 224 SVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHY 303 (374)
Q Consensus 224 ~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~ 303 (374)
.. -...++||+.++..|.++.-.|--.|++++-+||.++..+|-..++.|+++++++||||+.+++|+|++++.+||+|
T Consensus 423 rt-f~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy 501 (691)
T KOG0338|consen 423 RT-FQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINY 501 (691)
T ss_pred Hh-cccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEec
Confidence 54 36789999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHhhccCCCCCCceEEEEEeeccCCCcccceeccc
Q 037567 304 GCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGES 347 (374)
Q Consensus 304 ~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~ 347 (374)
.+|.+...|+||+||+.|.|..|..++++..+|...++.++.+.
T Consensus 502 ~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~ 545 (691)
T KOG0338|consen 502 AMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSS 545 (691)
T ss_pred cCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhh
Confidence 99999999999999999999999999999999988888887763
No 27
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=5.5e-48 Score=324.47 Aligned_cols=372 Identities=39% Similarity=0.631 Sum_probs=302.0
Q ss_pred hhHHHhHcCCCCC-chhHHHHHHHHHc-CCCEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHHcCCc
Q 037567 2 VSTLKKYFGYSVF-RPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGIN 79 (374)
Q Consensus 2 ~~~l~~~~~~~~~-~~~Q~~~~~~~~~-~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 79 (374)
.++|++.||++++ ++.|++|+..+.. ++++.+++|||+||+++|.||++..+...+|+.|..+|+.+..+.+.++...
T Consensus 8 reaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~gITIV~SPLiALIkDQiDHL~~LKVp 87 (641)
T KOG0352|consen 8 REALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHGGITIVISPLIALIKDQIDHLKRLKVP 87 (641)
T ss_pred HHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhCCeEEEehHHHHHHHHHHHHHHhcCCc
Confidence 4789999999986 5699999998876 5699999999999999999999998889999999999999999999988777
Q ss_pred eEEcCCCCCchhhh-----hhhhcCCeeEEEEcCcccccCchh-hHHH-HHhcCccEEEEeccchhhcccCcchHHHHHH
Q 037567 80 AEFLGSAQTDSSVQ-----TKAETGYFQLLFMTPEKACIIPIS-FWSK-LLKAGVCLFAVDEAHCISEWGHDFRLEYKQL 152 (374)
Q Consensus 80 ~~~~~~~~~~~~~~-----~~~~~~~~~i~i~T~~~l~~~~~~-~~~~-~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~ 152 (374)
...+.+..+..+.. ......+..+++.|||........ .... .....+.++|+||||.+.+||.++++.+..+
T Consensus 88 ~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~L 167 (641)
T KOG0352|consen 88 CESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTL 167 (641)
T ss_pred hhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhh
Confidence 66665544433321 112234568999999976443221 1111 1234478999999999999999999999999
Q ss_pred HHHHHhcCCCCeeEEEeecCcccHHHHHHhcCCCCCeEEE-eccCCCceeEEEEeecC---CcchHHHHHHHHHHh----
Q 037567 153 DKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTI-ASFDRKNLFYGVKVINR---GQSFVDELVQEILKS---- 224 (374)
Q Consensus 153 ~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---- 224 (374)
.+++...++.+++++|||.++...+++...+.+..|.-.. ...=+.++.+.+...+. ....+.+.....+..
T Consensus 168 G~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~ 247 (641)
T KOG0352|consen 168 GSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKA 247 (641)
T ss_pred hhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhh
Confidence 9999999999999999999999999999999998886433 33334555544433222 111222222222221
Q ss_pred ----hcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEE
Q 037567 225 ----VAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300 (374)
Q Consensus 225 ----~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~v 300 (374)
....+-.||||.+++.++.++-.|...|+++..+|.++...+|..+-++|.+++..|+++|...++|+|-|++++|
T Consensus 248 ~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFV 327 (641)
T KOG0352|consen 248 SQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFV 327 (641)
T ss_pred hcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEE
Confidence 0123569999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCChhHHHHhhccCCCCCCceEEEEEeeccCCCcccceeccccchH--------HHHHHHHHHHHHHHHhhhccc
Q 037567 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTEN--------QRTAIMESLLAAQRYCLLTTC 372 (374)
Q Consensus 301 i~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~ 372 (374)
|++++|.|+.-|.|-.||+||.|.+..|-++|.+.|.+.+.++++...... ..+....-+..|-.|||.+.|
T Consensus 328 iHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~~e~aklrek~~ke~~~k~~I~~F~k~~eFCE~~~C 407 (641)
T KOG0352|consen 328 IHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVSGELAKLREKAKKEMQIKSIITGFAKMLEFCESARC 407 (641)
T ss_pred EecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHhhHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHccc
Confidence 999999999999999999999999999999999999999999987554333 334456778999999999999
Q ss_pred C
Q 037567 373 R 373 (374)
Q Consensus 373 ~ 373 (374)
|
T Consensus 408 R 408 (641)
T KOG0352|consen 408 R 408 (641)
T ss_pred c
Confidence 9
No 28
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-48 Score=318.63 Aligned_cols=334 Identities=23% Similarity=0.309 Sum_probs=260.5
Q ss_pred ChhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcccccc------CCcEEEEcchHHHHHHHHHHHH
Q 037567 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVT------GKTALVVSPLISLMQDQVMSLK 74 (374)
Q Consensus 1 l~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~------~~~~lil~P~~~l~~q~~~~~~ 74 (374)
|++.++. +|+.+|+|+|..++|.+++|+|++=+|.||||||.+|.+|++.+ +.-++|++||++|+.|..+.|.
T Consensus 18 lve~l~~-l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~ 96 (442)
T KOG0340|consen 18 LVEQLKA-LGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFI 96 (442)
T ss_pred HHHHHHH-hcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHH
Confidence 4667777 89999999999999999999999999999999999999999974 4558999999999999999998
Q ss_pred HcC----CceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHH--HHHhcCccEEEEeccchhhcccCcchHH
Q 037567 75 QRG----INAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS--KLLKAGVCLFAVDEAHCISEWGHDFRLE 148 (374)
Q Consensus 75 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~--~~~~~~~~~vviDE~h~~~~~~~~~~~~ 148 (374)
..| .+..++.++ .+.-.+.......++++++||+++..++.+... ...++++.++|+|||+.+.+..+.
T Consensus 97 alGk~l~lK~~vivGG-~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~---- 171 (442)
T KOG0340|consen 97 ALGKLLNLKVSVIVGG-TDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFP---- 171 (442)
T ss_pred HhcccccceEEEEEcc-HHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchh----
Confidence 764 444444443 333344555667799999999999988776422 345678999999999999875443
Q ss_pred HHHHHHHHHhcC-CCCeeEEEeecCcccHHHHHHhcCCCC--CeEEEeccCC---CceeEEEEeecCCcchHHHHHHHHH
Q 037567 149 YKQLDKLRTFLL-GVPFVALTATATEKVRIDIINSLKLKN--PYVTIASFDR---KNLFYGVKVINRGQSFVDELVQEIL 222 (374)
Q Consensus 149 ~~~~~~~~~~~~-~~~~i~~SaT~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (374)
..+.-+.+..| ..+.++||||....... +....... ........+. ..+... ............+.+++
T Consensus 172 -d~L~~i~e~lP~~RQtLlfSATitd~i~q--l~~~~i~k~~a~~~e~~~~vstvetL~q~--yI~~~~~vkdaYLv~~L 246 (442)
T KOG0340|consen 172 -DILEGIEECLPKPRQTLLFSATITDTIKQ--LFGCPITKSIAFELEVIDGVSTVETLYQG--YILVSIDVKDAYLVHLL 246 (442)
T ss_pred -hHHhhhhccCCCccceEEEEeehhhHHHH--hhcCCcccccceEEeccCCCCchhhhhhh--eeecchhhhHHHHHHHH
Confidence 33444444444 45899999999876643 22222222 1111111111 111111 11222233445555555
Q ss_pred HhhcC--CCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEE
Q 037567 223 KSVAG--AGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300 (374)
Q Consensus 223 ~~~~~--~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~v 300 (374)
....+ .+.++||+++..+++.++..|+..++.++.+||.++.++|-..+.+|+.+..+|||||+.+++|+|+|.++.|
T Consensus 247 r~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LV 326 (442)
T KOG0340|consen 247 RDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELV 326 (442)
T ss_pred hhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEE
Confidence 55544 7899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCChhHHHHhhccCCCCCCceEEEEEeeccCCCcccceec
Q 037567 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCG 345 (374)
Q Consensus 301 i~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~ 345 (374)
++++.|.++.+|+||+||+.|.|..|.++.+++..|.+.+..+.+
T Consensus 327 vN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~ 371 (442)
T KOG0340|consen 327 VNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEE 371 (442)
T ss_pred EecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHH
Confidence 999999999999999999999999999999999999877665544
No 29
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-48 Score=339.67 Aligned_cols=326 Identities=23% Similarity=0.305 Sum_probs=258.1
Q ss_pred cCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcccccc----------------CCcEEEEcchHHHHHHHHHH
Q 037567 9 FGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVT----------------GKTALVVSPLISLMQDQVMS 72 (374)
Q Consensus 9 ~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~----------------~~~~lil~P~~~l~~q~~~~ 72 (374)
.++..|+|+|..++|.+..|++.+.+|+||||||.+|++|++.. .+.++|++||++|+.|.+.+
T Consensus 92 ~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~ne 171 (482)
T KOG0335|consen 92 SGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNE 171 (482)
T ss_pred ccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHH
Confidence 68999999999999999999999999999999999999998741 47899999999999999999
Q ss_pred HHHc----CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhc-ccCcchH
Q 037567 73 LKQR----GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISE-WGHDFRL 147 (374)
Q Consensus 73 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~-~~~~~~~ 147 (374)
.+++ +.....+.++ .....+......+|+|+|+||++|.++... ..+.+.++.++|+|||+.+.+ .++.
T Consensus 172 a~k~~~~s~~~~~~~ygg-~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~--g~i~l~~~k~~vLDEADrMlD~mgF~--- 245 (482)
T KOG0335|consen 172 ARKFSYLSGMKSVVVYGG-TDLGAQLRFIKRGCDILVATPGRLKDLIER--GKISLDNCKFLVLDEADRMLDEMGFE--- 245 (482)
T ss_pred HHhhcccccceeeeeeCC-cchhhhhhhhccCccEEEecCchhhhhhhc--ceeehhhCcEEEecchHHhhhhcccc---
Confidence 9876 3333444444 333344555667899999999999999777 777888999999999999988 6655
Q ss_pred HHHHHHHHHHhc-----CCCCeeEEEeecCcccHHHHHHhcCCCCCe---EEEeccCCCceeEEEEeecCCcchHHHHHH
Q 037567 148 EYKQLDKLRTFL-----LGVPFVALTATATEKVRIDIINSLKLKNPY---VTIASFDRKNLFYGVKVINRGQSFVDELVQ 219 (374)
Q Consensus 148 ~~~~~~~~~~~~-----~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (374)
..+.++.... .+.+.++||||.+..... ....+....+. +........++...+..... .....+++.
T Consensus 246 --p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~-l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~-~~kr~~Lld 321 (482)
T KOG0335|consen 246 --PQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQR-LAADFLKDNYIFLAVGRVGSTSENITQKILFVNE-MEKRSKLLD 321 (482)
T ss_pred --ccHHHHhcccCCCCccceeEEEEeccCChhhhh-hHHHHhhccceEEEEeeeccccccceeEeeeecc-hhhHHHHHH
Confidence 3344443333 257899999999998775 33333333232 22233345555555544443 233344444
Q ss_pred HHHHhhc--CCC-----cEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccc
Q 037567 220 EILKSVA--GAG-----SIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292 (374)
Q Consensus 220 ~~~~~~~--~~~-----~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~ 292 (374)
.+..... ..+ +++|||.+++.+..++..|...++++..+||+.+..+|.+.++.|+.|+..++|||+++.+|+
T Consensus 322 ll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGl 401 (482)
T KOG0335|consen 322 LLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGL 401 (482)
T ss_pred HhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCC
Confidence 4433221 233 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccEEEEECCCCChhHHHHhhccCCCCCCceEEEEEeeccCCCccccee
Q 037567 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYC 344 (374)
Q Consensus 293 d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~ 344 (374)
|+|++++||+|++|.+..+|+|||||+||.|+.|.+..|++..+....+.+.
T Consensus 402 Di~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~ 453 (482)
T KOG0335|consen 402 DIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALV 453 (482)
T ss_pred CCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHH
Confidence 9999999999999999999999999999999999999999965554444443
No 30
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-47 Score=310.92 Aligned_cols=331 Identities=21% Similarity=0.229 Sum_probs=262.5
Q ss_pred cCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcccccc------CCcEEEEcchHHHHHHHHHHHHHc----CC
Q 037567 9 FGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVT------GKTALVVSPLISLMQDQVMSLKQR----GI 78 (374)
Q Consensus 9 ~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~------~~~~lil~P~~~l~~q~~~~~~~~----~~ 78 (374)
.||+.|.|+|++++|..+.|++++..|..|+|||-+|.+|.+.+ .-+.+|++|+++|+.|..+-.... ++
T Consensus 103 ~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i 182 (459)
T KOG0326|consen 103 KGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLGI 182 (459)
T ss_pred hccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhcccCe
Confidence 69999999999999999999999999999999999999998874 446899999999999877666543 55
Q ss_pred ceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHh
Q 037567 79 NAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTF 158 (374)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~ 158 (374)
.+-+.+++..-.... .......+++|+||+++.++... .-..++...++|+|||+.+.+..+. ..+..+..+
T Consensus 183 ~vmvttGGT~lrDDI-~Rl~~~VH~~vgTPGRIlDL~~K--gVa~ls~c~~lV~DEADKlLs~~F~-----~~~e~li~~ 254 (459)
T KOG0326|consen 183 KVMVTTGGTSLRDDI-MRLNQTVHLVVGTPGRILDLAKK--GVADLSDCVILVMDEADKLLSVDFQ-----PIVEKLISF 254 (459)
T ss_pred EEEEecCCcccccce-eeecCceEEEEcCChhHHHHHhc--ccccchhceEEEechhhhhhchhhh-----hHHHHHHHh
Confidence 555555554443332 33456689999999999888665 4455678889999999999875544 455666666
Q ss_pred cC-CCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEEEeecCCcchHHHHHHHHHHhhcCCCcEEEEecc
Q 037567 159 LL-GVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237 (374)
Q Consensus 159 ~~-~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~ 237 (374)
+| +.+++++|||.+......+...+..+..+....+.....+...+.+. ........++.+..++ +-.+.||||++
T Consensus 255 lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV--~e~qKvhCLntLfskL-qINQsIIFCNS 331 (459)
T KOG0326|consen 255 LPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFV--EERQKVHCLNTLFSKL-QINQSIIFCNS 331 (459)
T ss_pred CCccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeee--chhhhhhhHHHHHHHh-cccceEEEecc
Confidence 65 68999999999988775445444433222222222222222111111 1233456677777766 67788999999
Q ss_pred hhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCCChhHHHHhhc
Q 037567 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESG 317 (374)
Q Consensus 238 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~G 317 (374)
.+.++.+++++.+.|+.+..+|+.|..+.|+.+..+|++|..+.||||+.+.+|+|++++++||+++.|.+++.|.||+|
T Consensus 332 ~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIG 411 (459)
T KOG0326|consen 332 TNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIG 411 (459)
T ss_pred chHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCceEEEEEeeccCCCcccceeccccch
Q 037567 318 RCGRDGIASVCWLYYARSNFAKGDFYCGESQTE 350 (374)
Q Consensus 318 R~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 350 (374)
|.||+|..|.++.+++.+|...+..+..++..+
T Consensus 412 RsGRFGhlGlAInLityedrf~L~~IE~eLGtE 444 (459)
T KOG0326|consen 412 RSGRFGHLGLAINLITYEDRFNLYRIEQELGTE 444 (459)
T ss_pred CCccCCCcceEEEEEehhhhhhHHHHHHHhccc
Confidence 999999999999999999887777776655544
No 31
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-46 Score=323.99 Aligned_cols=336 Identities=23% Similarity=0.264 Sum_probs=251.3
Q ss_pred ChhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc------------cCCcEEEEcchHHHHHH
Q 037567 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV------------TGKTALVVSPLISLMQD 68 (374)
Q Consensus 1 l~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~------------~~~~~lil~P~~~l~~q 68 (374)
|++.|...+++..|+.+|.+++|.+++|+|++|.++||||||++|++|+.+ .+.-+||++|||+|+.|
T Consensus 147 lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q 226 (708)
T KOG0348|consen 147 LVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQ 226 (708)
T ss_pred HHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHH
Confidence 467899999999999999999999999999999999999999999999875 26779999999999999
Q ss_pred HHHHHHHcCCce-----EEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccC
Q 037567 69 QVMSLKQRGINA-----EFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGH 143 (374)
Q Consensus 69 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~ 143 (374)
.++.+++.-... +++.++.... ........+++|+|+||++|.+.+.+- ..+.++.++.+|+||++.+.+-|+
T Consensus 227 ~y~~~qKLl~~~hWIVPg~lmGGEkkK-SEKARLRKGiNILIgTPGRLvDHLknT-~~i~~s~LRwlVlDEaDrlleLGf 304 (708)
T KOG0348|consen 227 IYETVQKLLKPFHWIVPGVLMGGEKKK-SEKARLRKGINILIGTPGRLVDHLKNT-KSIKFSRLRWLVLDEADRLLELGF 304 (708)
T ss_pred HHHHHHHHhcCceEEeeceeecccccc-cHHHHHhcCceEEEcCchHHHHHHhcc-chheeeeeeEEEecchhHHHhccc
Confidence 999998763222 2333333332 233445567999999999998887653 455667899999999999998776
Q ss_pred cchHHHHHHHHHHHhc-----------CCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCC--------------
Q 037567 144 DFRLEYKQLDKLRTFL-----------LGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRK-------------- 198 (374)
Q Consensus 144 ~~~~~~~~~~~~~~~~-----------~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 198 (374)
+. .+..+-...... +..+.+++|||+...... +..+.+.++..+..+....
T Consensus 305 ek--dit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~r--La~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~ 380 (708)
T KOG0348|consen 305 EK--DITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNR--LADLSLKDPVYISLDKSHSQLNPKDKAVQEVDD 380 (708)
T ss_pred hh--hHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHH--HhhccccCceeeeccchhhhcCcchhhhhhcCC
Confidence 52 222222222111 125679999999887754 6666666665444111000
Q ss_pred --------------ceeEEEEeecCCcc--hHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHc-----------
Q 037567 199 --------------NLFYGVKVINRGQS--FVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQL----------- 251 (374)
Q Consensus 199 --------------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~----------- 251 (374)
.+..++.+.+..-. .+..++....+. ....++|||+.+.+.++-=+..|...
T Consensus 381 ~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~-~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~ 459 (708)
T KOG0348|consen 381 GPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKF-EEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGA 459 (708)
T ss_pred cccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhh-hhhceeEEEEechhHHHHHHHHHHhhhhcccccccCC
Confidence 01111111111111 112333333333 24568999999999888777776542
Q ss_pred -----------CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCCChhHHHHhhccCC
Q 037567 252 -----------GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCG 320 (374)
Q Consensus 252 -----------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~ 320 (374)
+.++..+||+|+.++|..+++.|...+-.||+||+.+++|+|+|.+++||.|++|.+..+|+||+||+.
T Consensus 460 ~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTA 539 (708)
T KOG0348|consen 460 PDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTA 539 (708)
T ss_pred cccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhh
Confidence 334778999999999999999999998889999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEEeeccCCCcccce
Q 037567 321 RDGIASVCWLYYARSNFAKGDFY 343 (374)
Q Consensus 321 R~~~~g~~~~~~~~~~~~~~~~~ 343 (374)
|.|..|.+++|+.+.+.++++.+
T Consensus 540 RaG~kG~alLfL~P~Eaey~~~l 562 (708)
T KOG0348|consen 540 RAGEKGEALLFLLPSEAEYVNYL 562 (708)
T ss_pred hccCCCceEEEecccHHHHHHHH
Confidence 99999999999999987754443
No 32
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=2e-45 Score=305.42 Aligned_cols=366 Identities=40% Similarity=0.659 Sum_probs=316.1
Q ss_pred hHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHHcCCceEE
Q 037567 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGINAEF 82 (374)
Q Consensus 3 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 82 (374)
.-|++.|..++++|.|..++++...++++++..|||.||+++|.+|++....-+|+++|..+|.++..-.+++.|+....
T Consensus 84 ~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~adg~alvi~plislmedqil~lkqlgi~as~ 163 (695)
T KOG0353|consen 84 DILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCADGFALVICPLISLMEDQILQLKQLGIDASM 163 (695)
T ss_pred HHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcCCceEeechhHHHHHHHHHHHHHhCcchhh
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cCCCCCchhhhh-----hhhcCCeeEEEEcCcccccC---chhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHH
Q 037567 83 LGSAQTDSSVQT-----KAETGYFQLLFMTPEKACII---PISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDK 154 (374)
Q Consensus 83 ~~~~~~~~~~~~-----~~~~~~~~i~i~T~~~l~~~---~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~ 154 (374)
+......++... -..+..+.+++.||+++... ++..........+.++-+||+|...+||.++++.+..+..
T Consensus 164 lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~i 243 (695)
T KOG0353|consen 164 LNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGI 243 (695)
T ss_pred ccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHH
Confidence 766555443211 12235678999999988543 2333334445668899999999999999999999999999
Q ss_pred HHHhcCCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEEEeecCCcchHHHHHHHHHHhhcCCCcEEEE
Q 037567 155 LRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVY 234 (374)
Q Consensus 155 ~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf 234 (374)
+...+++.+++++|||.......+....+++.........++++++.+.+...+.......+-+..+++.-..+...|||
T Consensus 244 lkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiy 323 (695)
T KOG0353|consen 244 LKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIY 323 (695)
T ss_pred HHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEE
Confidence 99999999999999999999988888889998888899999999999999887766554443333343333467889999
Q ss_pred ecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCCChhHHHH
Q 037567 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQ 314 (374)
Q Consensus 235 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q 314 (374)
|-+.+++++++..|+.+|+.+..+|..+.+.++....+.|..|++.|+|+|-+.++|+|-|++++||++++|.|..+|.|
T Consensus 324 c~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyq 403 (695)
T KOG0353|consen 324 CFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQ 403 (695)
T ss_pred EeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -------------------------------------------hhccCCCCCCceEEEEEeeccCCCcccceeccccchH
Q 037567 315 -------------------------------------------ESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTEN 351 (374)
Q Consensus 315 -------------------------------------------~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (374)
-.||+||.+.+..|+++|.-.|+-+. +....
T Consensus 404 asarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~difk~------ssmv~ 477 (695)
T KOG0353|consen 404 ASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIFKI------SSMVQ 477 (695)
T ss_pred HHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHHHhH------HHHHH
Confidence 57999999999999999988765443 34445
Q ss_pred HHHHHHHHHHHHHHHhhh-cccCC
Q 037567 352 QRTAIMESLLAAQRYCLL-TTCRR 374 (374)
Q Consensus 352 ~~~~~~~~l~~~~~~~~~-~~~~~ 374 (374)
....-.++|-+|.+||.. +.|||
T Consensus 478 ~e~~g~q~ly~mv~y~~d~s~crr 501 (695)
T KOG0353|consen 478 MENTGIQKLYEMVRYAADISKCRR 501 (695)
T ss_pred HHhhhHHHHHHHHHHHhhhHHHHH
Confidence 556678899999999998 69997
No 33
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=2.5e-44 Score=350.01 Aligned_cols=309 Identities=23% Similarity=0.266 Sum_probs=223.1
Q ss_pred CCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc------------cCCcEEEEcchHHHHHHHHHHHHH--
Q 037567 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV------------TGKTALVVSPLISLMQDQVMSLKQ-- 75 (374)
Q Consensus 10 ~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~------------~~~~~lil~P~~~l~~q~~~~~~~-- 75 (374)
+|..|+|+|.++++.+.+++++++.||||||||++|.++++. .+.+++|++|+++|++|+.+.+..
T Consensus 29 ~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l 108 (876)
T PRK13767 29 KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPL 108 (876)
T ss_pred ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999999999999888763 134699999999999998875541
Q ss_pred ---------c-----CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcc
Q 037567 76 ---------R-----GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEW 141 (374)
Q Consensus 76 ---------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~ 141 (374)
. ++.+.+.+++..... ........++|+|+||+++..++........+.++++||+||+|.+.+.
T Consensus 109 ~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~-r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~ 187 (876)
T PRK13767 109 TEIREIAKERGEELPEIRVAIRTGDTSSYE-KQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAEN 187 (876)
T ss_pred HHHHHHHHhcCCCcCCeeEEEEcCCCCHHH-HHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccC
Confidence 1 334455555544333 2334445689999999999777655433345788999999999999753
Q ss_pred --cCcchHHHHHHHHHHHhcCCCCeeEEEeecCcccHHHHHHhcCCC------CCeEEEeccCCCceeEEEEe-----ec
Q 037567 142 --GHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLK------NPYVTIASFDRKNLFYGVKV-----IN 208 (374)
Q Consensus 142 --~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-----~~ 208 (374)
|......+.++..+. ..+.+++++|||+.+.. .+..++... .+.................. ..
T Consensus 188 ~RG~~l~~~L~rL~~l~--~~~~q~IglSATl~~~~--~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~ 263 (876)
T PRK13767 188 KRGVHLSLSLERLEELA--GGEFVRIGLSATIEPLE--EVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISPVDDLIH 263 (876)
T ss_pred ccHHHHHHHHHHHHHhc--CCCCeEEEEecccCCHH--HHHHHhcCccccCCCCceEEEccCCCccceEEEeccCccccc
Confidence 333333333333322 14678999999998743 345554432 11111111111111111100 00
Q ss_pred CC-cchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHc------CCceeeeecCCChHHHHHHHHhhhcCCeeE
Q 037567 209 RG-QSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQL------GVKAGTYHGQMGSKAREEAHRLFIRDEIRV 281 (374)
Q Consensus 209 ~~-~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~i 281 (374)
.. ......+...+.+....++++||||++++.++.++..|++. +..+..+||+++.++|..+++.|++|+.++
T Consensus 264 ~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~v 343 (876)
T PRK13767 264 TPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKV 343 (876)
T ss_pred cccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeE
Confidence 11 11122333334444446789999999999999999999873 357899999999999999999999999999
Q ss_pred EEEeccccccccccCccEEEEECCCCChhHHHHhhccCCCCC
Q 037567 282 MVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323 (374)
Q Consensus 282 lv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~ 323 (374)
||||+.+++|+|+|++++||+++.|.+...|+||+||+||.+
T Consensus 344 LVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~ 385 (876)
T PRK13767 344 VVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRL 385 (876)
T ss_pred EEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCC
Confidence 999999999999999999999999999999999999999863
No 34
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-45 Score=317.64 Aligned_cols=320 Identities=24% Similarity=0.316 Sum_probs=254.8
Q ss_pred hHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcccccc----------CCcEEEEcchHHHHHHHHHH
Q 037567 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVT----------GKTALVVSPLISLMQDQVMS 72 (374)
Q Consensus 3 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~----------~~~~lil~P~~~l~~q~~~~ 72 (374)
+.|++ .+|..++.+|.++|+..++|++++-.|.||||||++|+.|++.. +-=+||+.|||+|+.|.++.
T Consensus 82 kgLke-~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFev 160 (758)
T KOG0343|consen 82 KGLKE-AKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEV 160 (758)
T ss_pred HhHhh-cCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHH
Confidence 46777 78999999999999999999999999999999999999998852 55699999999999999999
Q ss_pred HHHcCCc----eEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHH
Q 037567 73 LKQRGIN----AEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLE 148 (374)
Q Consensus 73 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~ 148 (374)
+.+.|.. ..++.++..-..... .-...+|+||||++|+.++... -.+...++.++|+|||+++.+.|+.
T Consensus 161 L~kvgk~h~fSaGLiiGG~~~k~E~e--Ri~~mNILVCTPGRLLQHmde~-~~f~t~~lQmLvLDEADR~LDMGFk---- 233 (758)
T KOG0343|consen 161 LNKVGKHHDFSAGLIIGGKDVKFELE--RISQMNILVCTPGRLLQHMDEN-PNFSTSNLQMLVLDEADRMLDMGFK---- 233 (758)
T ss_pred HHHHhhccccccceeecCchhHHHHH--hhhcCCeEEechHHHHHHhhhc-CCCCCCcceEEEeccHHHHHHHhHH----
Confidence 9987543 344444443333222 2345799999999987655431 2234467899999999999998876
Q ss_pred HHHHHHHHHhcC-CCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccC-----CCceeEEEEeecCCcchHHHHHHHHH
Q 037567 149 YKQLDKLRTFLL-GVPFVALTATATEKVRIDIINSLKLKNPYVTIASFD-----RKNLFYGVKVINRGQSFVDELVQEIL 222 (374)
Q Consensus 149 ~~~~~~~~~~~~-~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (374)
..++.+...+| ..|.++||||...+... +..+.+.+|..+....+ +.++...+...+. ......+-.++
T Consensus 234 -~tL~~Ii~~lP~~RQTLLFSATqt~svkd--LaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l--~~Ki~~L~sFI 308 (758)
T KOG0343|consen 234 -KTLNAIIENLPKKRQTLLFSATQTKSVKD--LARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPL--EDKIDMLWSFI 308 (758)
T ss_pred -HHHHHHHHhCChhheeeeeecccchhHHH--HHHhhcCCCcEEEEeccccccChhhhhheEEEEeh--hhHHHHHHHHH
Confidence 67777777776 58899999999998764 55566666654433321 1222222222111 22334444444
Q ss_pred HhhcCCCcEEEEecchhHHHHHHHHHHHc--CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEE
Q 037567 223 KSVAGAGSIIVYCMTIKDVEEISKALKQL--GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300 (374)
Q Consensus 223 ~~~~~~~~~lVf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~v 300 (374)
+. +...+.|||+.+.+++..+++.+.+. |+++..+||.++...|..+...|...+..||+||+.+++|+|+|.+++|
T Consensus 309 ~s-hlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwV 387 (758)
T KOG0343|consen 309 KS-HLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWV 387 (758)
T ss_pred Hh-ccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceE
Confidence 44 36789999999999999999999874 7888999999999999999999999999999999999999999999999
Q ss_pred EEECCCCChhHHHHhhccCCCCCCceEEEEEeeccC
Q 037567 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN 336 (374)
Q Consensus 301 i~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 336 (374)
|.+++|.++.+|+||+||+.|.+..|.+++++.+.+
T Consensus 388 iQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psE 423 (758)
T KOG0343|consen 388 IQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSE 423 (758)
T ss_pred EEecCchhHHHHHHHhhhhhcccCCCceEEEEcchh
Confidence 999999999999999999999999999999999988
No 35
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=6.9e-45 Score=350.96 Aligned_cols=324 Identities=21% Similarity=0.275 Sum_probs=235.1
Q ss_pred hhHHHhHcCCCCCchhHHHHHHH-HHcCCCEEEEccCCCCchhhhhccccc---cCCcEEEEcchHHHHHHHHHHHHHc-
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQR-IIEKRDCLVVMATGSGKSLCYQLPPLV---TGKTALVVSPLISLMQDQVMSLKQR- 76 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~-~~~~~~~l~~a~tGsGKT~~~~l~~~~---~~~~~lil~P~~~l~~q~~~~~~~~- 76 (374)
.+++++ .||.+|+|+|.++++. +.++++++++||||||||++|.++++. ++.+++|++|+++|+.|+.++++.+
T Consensus 13 ~~~l~~-~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~q~~~~~~~~~ 91 (737)
T PRK02362 13 IEFYEA-EGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALASEKFEEFERFE 91 (737)
T ss_pred HHHHHh-CCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHHHHhh
Confidence 456766 7999999999999998 678999999999999999999888765 5789999999999999999999876
Q ss_pred --CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHH
Q 037567 77 --GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDK 154 (374)
Q Consensus 77 --~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~ 154 (374)
|.++...+++...... ..+.++|+|+||+++..+.+. ....+.+++++|+||+|.+.+.+...... ..+.+
T Consensus 92 ~~g~~v~~~tGd~~~~~~----~l~~~~IiV~Tpek~~~llr~--~~~~l~~v~lvViDE~H~l~d~~rg~~le-~il~r 164 (737)
T PRK02362 92 ELGVRVGISTGDYDSRDE----WLGDNDIIVATSEKVDSLLRN--GAPWLDDITCVVVDEVHLIDSANRGPTLE-VTLAK 164 (737)
T ss_pred cCCCEEEEEeCCcCcccc----ccCCCCEEEECHHHHHHHHhc--ChhhhhhcCEEEEECccccCCCcchHHHH-HHHHH
Confidence 6777766665433221 124579999999998776554 22346789999999999997644322111 12344
Q ss_pred HHHhcCCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccC-------CCceeEEEEeecCCcchHHHHHHHHHHhhcC
Q 037567 155 LRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFD-------RKNLFYGVKVINRGQSFVDELVQEILKSVAG 227 (374)
Q Consensus 155 ~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (374)
+....++.+++++|||+++.. ++..|++............ .....................+..+.+....
T Consensus 165 l~~~~~~~qii~lSATl~n~~--~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (737)
T PRK02362 165 LRRLNPDLQVVALSATIGNAD--ELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTLEE 242 (737)
T ss_pred HHhcCCCCcEEEEcccCCCHH--HHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHHHc
Confidence 444446789999999998643 5567665432100000000 0000000000000000112333444444457
Q ss_pred CCcEEEEecchhHHHHHHHHHHHcC------------------------------------CceeeeecCCChHHHHHHH
Q 037567 228 AGSIIVYCMTIKDVEEISKALKQLG------------------------------------VKAGTYHGQMGSKAREEAH 271 (374)
Q Consensus 228 ~~~~lVf~~~~~~~~~l~~~l~~~~------------------------------------~~~~~~~~~~~~~~r~~~~ 271 (374)
++++||||+++..++.+++.|.... ..+..+|++++..+|..++
T Consensus 243 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve 322 (737)
T PRK02362 243 GGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVE 322 (737)
T ss_pred CCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHH
Confidence 8899999999999999888876431 2578899999999999999
Q ss_pred HhhhcCCeeEEEEeccccccccccCccEEEE----EC-----CCCChhHHHHhhccCCCCCCc--eEEEEEeecc
Q 037567 272 RLFIRDEIRVMVATMAFGMGIDKPDVRHVIH----YG-----CPKTLESYYQESGRCGRDGIA--SVCWLYYARS 335 (374)
Q Consensus 272 ~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~----~~-----~p~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~ 335 (374)
+.|++|.++|||||+.+++|+|+|..++||. |+ .|.+..+|.||+|||||.|.+ |.+++++...
T Consensus 323 ~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 323 DAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred HHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCc
Confidence 9999999999999999999999999999886 44 578999999999999999865 8888888664
No 36
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-45 Score=307.87 Aligned_cols=326 Identities=22% Similarity=0.286 Sum_probs=256.7
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc------------cCCcEEEEcchHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV------------TGKTALVVSPLISLMQDQ 69 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~------------~~~~~lil~P~~~l~~q~ 69 (374)
.+++.+ .|+.+|+-+|+.+||-+++|+|++..|.||||||.+|++|+++ .+..++|++||++|+.|+
T Consensus 31 lkAi~~-lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQv 109 (569)
T KOG0346|consen 31 LKAITK-LGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQV 109 (569)
T ss_pred HHHHHH-hCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHH
Confidence 466777 8999999999999999999999999999999999999999885 266799999999999999
Q ss_pred HHHHHHc------CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccC
Q 037567 70 VMSLKQR------GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGH 143 (374)
Q Consensus 70 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~ 143 (374)
+..+.+. .+++.-+.....+.. ......+.++|+|+||..+..+..... ......+.++|+|||+.+..+|.
T Consensus 110 y~viekL~~~c~k~lr~~nl~s~~sdsv-~~~~L~d~pdIvV~TP~~ll~~~~~~~-~~~~~~l~~LVvDEADLllsfGY 187 (569)
T KOG0346|consen 110 YKVIEKLVEYCSKDLRAINLASSMSDSV-NSVALMDLPDIVVATPAKLLRHLAAGV-LEYLDSLSFLVVDEADLLLSFGY 187 (569)
T ss_pred HHHHHHHHHHHHHhhhhhhhhcccchHH-HHHHHccCCCeEEeChHHHHHHHhhcc-chhhhheeeEEechhhhhhhccc
Confidence 9888764 122222222222222 224456779999999999987766521 15667889999999999998887
Q ss_pred cchHHHHHHHHHHHhcC-CCCeeEEEeecCcccHHHHHHhcCCCCCeEEEe-ccCCC--ceeEEEEeecCCcchHHHHHH
Q 037567 144 DFRLEYKQLDKLRTFLL-GVPFVALTATATEKVRIDIINSLKLKNPYVTIA-SFDRK--NLFYGVKVINRGQSFVDELVQ 219 (374)
Q Consensus 144 ~~~~~~~~~~~~~~~~~-~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~ 219 (374)
+ ..+..+...+| ..|.++||||.+.+... +..+.+.+|.+... +.+.+ +-...+.+... ....-.++.
T Consensus 188 e-----edlk~l~~~LPr~~Q~~LmSATl~dDv~~--LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cs-e~DKfllly 259 (569)
T KOG0346|consen 188 E-----EDLKKLRSHLPRIYQCFLMSATLSDDVQA--LKKLFLHNPVILKLTEGELPNPDQLTQYQVKCS-EEDKFLLLY 259 (569)
T ss_pred H-----HHHHHHHHhCCchhhheeehhhhhhHHHH--HHHHhccCCeEEEeccccCCCcccceEEEEEec-cchhHHHHH
Confidence 6 55666666665 57889999999988754 67777777765433 22222 22222222222 222333444
Q ss_pred HHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEec-------------
Q 037567 220 EILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM------------- 286 (374)
Q Consensus 220 ~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~------------- 286 (374)
.+++.---.++.|||+|+.+.+.++.=.|...|++...++|+++...|.-++++|+.|-++++|+|+
T Consensus 260 allKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~k 339 (569)
T KOG0346|consen 260 ALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVK 339 (569)
T ss_pred HHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhcccc
Confidence 4444333578999999999999999999999999999999999999999999999999999999998
Q ss_pred ----------------------cccccccccCccEEEEECCCCChhHHHHhhccCCCCCCceEEEEEeeccCCC
Q 037567 287 ----------------------AFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338 (374)
Q Consensus 287 ----------------------~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 338 (374)
-.++|+|+..+..|+++|+|.+...|+||+||++|.+++|.+..|+.+.+..
T Consensus 340 gk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~ 413 (569)
T KOG0346|consen 340 GKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEF 413 (569)
T ss_pred ccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHh
Confidence 1458999999999999999999999999999999999999999999998755
No 37
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-44 Score=310.14 Aligned_cols=339 Identities=18% Similarity=0.290 Sum_probs=285.5
Q ss_pred hHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc-----------cCCcEEEEcchHHHHHHHHH
Q 037567 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV-----------TGKTALVVSPLISLMQDQVM 71 (374)
Q Consensus 3 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~-----------~~~~~lil~P~~~l~~q~~~ 71 (374)
.++++ --|++|+|+|.+++|..+.+++++=.|.||||||-+|+++++. .++..+|++||++|+.|++.
T Consensus 236 ~airk-~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~ 314 (731)
T KOG0339|consen 236 TAIRK-SEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFS 314 (731)
T ss_pred HHHhh-hhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHH
Confidence 45555 4688999999999999999999999999999999999988763 26779999999999999999
Q ss_pred HHHHc----CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchH
Q 037567 72 SLKQR----GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRL 147 (374)
Q Consensus 72 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~ 147 (374)
+.++| |+++..++++....+....+. .++.|+|+||++|.+++.- +..++.+..++|+||+++|.+.|++
T Consensus 315 eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk-~g~EivVaTPgRlid~Vkm--Katn~~rvS~LV~DEadrmfdmGfe--- 388 (731)
T KOG0339|consen 315 EAKKFGKAYGLRVVAVYGGGSKWEQSKELK-EGAEIVVATPGRLIDMVKM--KATNLSRVSYLVLDEADRMFDMGFE--- 388 (731)
T ss_pred HHHHhhhhccceEEEeecCCcHHHHHHhhh-cCCeEEEechHHHHHHHHh--hcccceeeeEEEEechhhhhccccH---
Confidence 98876 677777777777766665555 7799999999999888554 7778899999999999999998876
Q ss_pred HHHHHHHHHHhc-CCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEecc--CCCceeEEEEeecCCcchHHHHHHHHHHh
Q 037567 148 EYKQLDKLRTFL-LGVPFVALTATATEKVRIDIINSLKLKNPYVTIASF--DRKNLFYGVKVINRGQSFVDELVQEILKS 224 (374)
Q Consensus 148 ~~~~~~~~~~~~-~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (374)
.++..+.... ++.|.++||||......+ +.+.+...+..++..+. ....+...+.++.+....+.-++.++...
T Consensus 389 --~qVrSI~~hirpdrQtllFsaTf~~kIe~-lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f 465 (731)
T KOG0339|consen 389 --PQVRSIKQHIRPDRQTLLFSATFKKKIEK-LARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEF 465 (731)
T ss_pred --HHHHHHHhhcCCcceEEEeeccchHHHHH-HHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhh
Confidence 4555555544 478999999999988775 34444444444444443 33456666777777777777777777665
Q ss_pred hcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEEC
Q 037567 225 VAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYG 304 (374)
Q Consensus 225 ~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~ 304 (374)
. ..+++|||+..+..+++++..|+-.++++..+||++...+|++++..|+.+...|+++|+...+|+|+|.+..|++++
T Consensus 466 ~-S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD 544 (731)
T KOG0339|consen 466 S-SEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYD 544 (731)
T ss_pred c-cCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeeccc
Confidence 4 778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHhhccCCCCCCceEEEEEeeccCCCcccceeccccchHH
Q 037567 305 CPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ 352 (374)
Q Consensus 305 ~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (374)
.-.+++.+.||+||+||.|..|..|+++++.|.+....+.+.++...+
T Consensus 545 ~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~agQ 592 (731)
T KOG0339|consen 545 FARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQ 592 (731)
T ss_pred ccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhccc
Confidence 999999999999999999999999999999999888877776665554
No 38
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.1e-45 Score=307.19 Aligned_cols=321 Identities=23% Similarity=0.307 Sum_probs=247.4
Q ss_pred hHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc--------------cCCcEEEEcchHHHHHH
Q 037567 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV--------------TGKTALVVSPLISLMQD 68 (374)
Q Consensus 3 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~--------------~~~~~lil~P~~~l~~q 68 (374)
+-+++ -|+..|+|+|.+.+|.+++|++.+=.|-||||||+.|.+|++. .++-.||+||+++|+.|
T Consensus 183 ~~lk~-KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQ 261 (610)
T KOG0341|consen 183 RGLKK-KGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQ 261 (610)
T ss_pred HHHHh-cCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHH
Confidence 34555 6999999999999999999999999999999999999887552 37789999999999999
Q ss_pred HHHHHHHc-------CC---ceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchh
Q 037567 69 QVMSLKQR-------GI---NAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCI 138 (374)
Q Consensus 69 ~~~~~~~~-------~~---~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~ 138 (374)
..+-+..+ |. +..++.++. ....+..-...+.+|+|+||++|.+++.. +...+.-++++.+|||+++
T Consensus 262 t~~iie~~~~~L~e~g~P~lRs~LciGG~-~v~eql~~v~~GvHivVATPGRL~DmL~K--K~~sLd~CRyL~lDEADRm 338 (610)
T KOG0341|consen 262 THDIIEQYVAALQEAGYPELRSLLCIGGV-PVREQLDVVRRGVHIVVATPGRLMDMLAK--KIMSLDACRYLTLDEADRM 338 (610)
T ss_pred HHHHHHHHHHHHHhcCChhhhhhhhhcCc-cHHHHHHHHhcCeeEEEcCcchHHHHHHH--hhccHHHHHHhhhhhHHHH
Confidence 88777654 21 222333333 33334445567789999999999988776 5556667789999999999
Q ss_pred hcccCcchHHHHHHHHHHHhcC-CCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEEEeecCCcchHHHH
Q 037567 139 SEWGHDFRLEYKQLDKLRTFLL-GVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDEL 217 (374)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (374)
.+.|++ .-+..+..++. .++.++||||++..... +....-+.+..+........++....++-.-........
T Consensus 339 iDmGFE-----ddir~iF~~FK~QRQTLLFSATMP~KIQ~-FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVy 412 (610)
T KOG0341|consen 339 IDMGFE-----DDIRTIFSFFKGQRQTLLFSATMPKKIQN-FAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVY 412 (610)
T ss_pred hhccch-----hhHHHHHHHHhhhhheeeeeccccHHHHH-HHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhh
Confidence 998876 55555555554 68899999999988763 444433344333333322222211111100011111122
Q ss_pred HHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCc
Q 037567 218 VQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297 (374)
Q Consensus 218 ~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~ 297 (374)
+-+.+++ ..-++||||..+.+++.+.++|--.|..++.+||+-..++|..-++.|+.|+.+|||+|+.++.|+|+|++
T Consensus 413 lLeCLQK--T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~i 490 (610)
T KOG0341|consen 413 LLECLQK--TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDI 490 (610)
T ss_pred HHHHhcc--CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccc
Confidence 2233333 46789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEECCCCChhHHHHhhccCCCCCCceEEEEEeecc
Q 037567 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARS 335 (374)
Q Consensus 298 ~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 335 (374)
.+||+|++|....+|+|||||+||.|+.|.+.+|+.+.
T Consensus 491 qHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~ 528 (610)
T KOG0341|consen 491 QHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKN 528 (610)
T ss_pred hhhccCCChHHHHHHHHHhcccCCCCCcceeeeeeccc
Confidence 99999999999999999999999999999999998764
No 39
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.4e-45 Score=299.90 Aligned_cols=321 Identities=17% Similarity=0.217 Sum_probs=248.1
Q ss_pred cCCCCCchhHHHHHHHHHcC--CCEEEEccCCCCchhhhhcccccc------CCcEEEEcchHHHHHHHHHHHHHcCCce
Q 037567 9 FGYSVFRPYQKDVIQRIIEK--RDCLVVMATGSGKSLCYQLPPLVT------GKTALVVSPLISLMQDQVMSLKQRGINA 80 (374)
Q Consensus 9 ~~~~~~~~~Q~~~~~~~~~~--~~~l~~a~tGsGKT~~~~l~~~~~------~~~~lil~P~~~l~~q~~~~~~~~~~~~ 80 (374)
|+|..|+.+|+.++|-++.. ++.|..+..|+|||.+|.+.++.+ .+.+++++|+++|+.|..+-+.+.|...
T Consensus 108 M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~ 187 (477)
T KOG0332|consen 108 MKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFT 187 (477)
T ss_pred hccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHHHhcCce
Confidence 89999999999999999874 688999999999999999998864 6789999999999999999999887665
Q ss_pred EEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhc-ccCcchHHHHHHHHHHHhc
Q 037567 81 EFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISE-WGHDFRLEYKQLDKLRTFL 159 (374)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~-~~~~~~~~~~~~~~~~~~~ 159 (374)
.+................-.-.|+|+||+.+.++.... ..+....+.++|+|||+.+.+ .|++ ..-.++....
T Consensus 188 ~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~kl-k~id~~kikvfVlDEAD~Mi~tqG~~-----D~S~rI~~~l 261 (477)
T KOG0332|consen 188 ELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKL-KCIDLEKIKVFVLDEADVMIDTQGFQ-----DQSIRIMRSL 261 (477)
T ss_pred eeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHH-HhhChhhceEEEecchhhhhhccccc-----ccchhhhhhc
Confidence 33222222222111111122379999999988765542 455667889999999999976 3433 2222333333
Q ss_pred -CCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEEEeecCCcchHHHHHHHHHHhhcCCCcEEEEecch
Q 037567 160 -LGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238 (374)
Q Consensus 160 -~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~ 238 (374)
++.+.+.||||..............-.++.+...........+.............+++.++.... .-++.||||.++
T Consensus 262 P~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~-tigqsiIFc~tk 340 (477)
T KOG0332|consen 262 PRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGLL-TIGQSIIFCHTK 340 (477)
T ss_pred CCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHHHHhhh-hhhheEEEEeeh
Confidence 489999999999988776555555444444444333322222233333333344455555565554 568899999999
Q ss_pred hHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCC------ChhHH
Q 037567 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPK------TLESY 312 (374)
Q Consensus 239 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~------s~~~~ 312 (374)
..+..++..+.+.|..+..+||++...+|..++..|+.|+.+|||+|+.+.+|+|++.++.||+|++|. +...|
T Consensus 341 ~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etY 420 (477)
T KOG0332|consen 341 ATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETY 420 (477)
T ss_pred hhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999995 78999
Q ss_pred HHhhccCCCCCCceEEEEEeeccC
Q 037567 313 YQESGRCGRDGIASVCWLYYARSN 336 (374)
Q Consensus 313 ~Q~~GR~~R~~~~g~~~~~~~~~~ 336 (374)
+||+||+||+|+.|.++.+++..+
T Consensus 421 lHRiGRtGRFGkkG~a~n~v~~~~ 444 (477)
T KOG0332|consen 421 LHRIGRTGRFGKKGLAINLVDDKD 444 (477)
T ss_pred HHHhcccccccccceEEEeecccC
Confidence 999999999999999999988755
No 40
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-44 Score=309.69 Aligned_cols=335 Identities=21% Similarity=0.253 Sum_probs=247.1
Q ss_pred HHhHcCCCCCchhHHHHHHHHHc---------CCCEEEEccCCCCchhhhhccccc-------cCCcEEEEcchHHHHHH
Q 037567 5 LKKYFGYSVFRPYQKDVIQRIIE---------KRDCLVVMATGSGKSLCYQLPPLV-------TGKTALVVSPLISLMQD 68 (374)
Q Consensus 5 l~~~~~~~~~~~~Q~~~~~~~~~---------~~~~l~~a~tGsGKT~~~~l~~~~-------~~~~~lil~P~~~l~~q 68 (374)
+.+ +++....|.|...++.++. .+|+++.||||||||++|.+|+.+ +.-+++|++|+++|+.|
T Consensus 152 l~k-~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~Q 230 (620)
T KOG0350|consen 152 LVK-MAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQ 230 (620)
T ss_pred HHH-hhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHH
Confidence 444 7899999999999999864 478999999999999999999875 25689999999999999
Q ss_pred HHHHHHHc----CCceEEcCCCCCchhhhhhhhcCCe----eEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhc
Q 037567 69 QVMSLKQR----GINAEFLGSAQTDSSVQTKAETGYF----QLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISE 140 (374)
Q Consensus 69 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~----~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~ 140 (374)
+++.|..+ |+.++.+.+...-..+...+....+ ||+|+||++|.+++++ ...+.+.+++++|||||+++.+
T Consensus 231 V~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~-~k~f~Lk~LrfLVIDEADRll~ 309 (620)
T KOG0350|consen 231 VYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNN-TKSFDLKHLRFLVIDEADRLLD 309 (620)
T ss_pred HHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccC-CCCcchhhceEEEechHHHHHH
Confidence 99999987 4445555555455555555555555 9999999999988876 3677889999999999999986
Q ss_pred ccCcchHHH--------------------------HHHHHHHHh----cCCCCeeEEEeecCcccHHHHHHhcCCCCCeE
Q 037567 141 WGHDFRLEY--------------------------KQLDKLRTF----LLGVPFVALTATATEKVRIDIINSLKLKNPYV 190 (374)
Q Consensus 141 ~~~~~~~~~--------------------------~~~~~~~~~----~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~ 190 (374)
..++-+... ..+.++... .++...+++|||.+....+ +..+.+..|..
T Consensus 310 qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~K--l~~l~l~~Prl 387 (620)
T KOG0350|consen 310 QSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSK--LKDLTLHIPRL 387 (620)
T ss_pred HHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHH--HhhhhcCCCce
Confidence 433211110 011111111 1223367888887776544 55555555532
Q ss_pred EEeccC------CCceeEEEEeecCCcchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHH-H---cCCceeeeec
Q 037567 191 TIASFD------RKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALK-Q---LGVKAGTYHG 260 (374)
Q Consensus 191 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~-~---~~~~~~~~~~ 260 (374)
...... .+....+...... ....--.+..++.. ....++|+|+++.+.+.+++..|+ . ...++-.+.|
T Consensus 388 ~~v~~~~~~ryslp~~l~~~~vv~~-~~~kpl~~~~lI~~-~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~ 465 (620)
T KOG0350|consen 388 FHVSKPLIGRYSLPSSLSHRLVVTE-PKFKPLAVYALITS-NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTG 465 (620)
T ss_pred EEeecccceeeecChhhhhceeecc-cccchHhHHHHHHH-hhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhh
Confidence 222211 1111111111111 11112223333333 478899999999999999999988 3 2445566889
Q ss_pred CCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCCChhHHHHhhccCCCCCCceEEEEEeeccCCCcc
Q 037567 261 QMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKG 340 (374)
Q Consensus 261 ~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~ 340 (374)
.++.+.|...++.|..|++.+|||++++.+|+|+.+++.||+|++|.+...|+||+||++|.|+.|.+|.+....+.+.+
T Consensus 466 ~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F 545 (620)
T KOG0350|consen 466 QLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLF 545 (620)
T ss_pred hhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred cceec
Q 037567 341 DFYCG 345 (374)
Q Consensus 341 ~~~~~ 345 (374)
.++.+
T Consensus 546 ~klL~ 550 (620)
T KOG0350|consen 546 SKLLK 550 (620)
T ss_pred HHHHH
Confidence 77755
No 41
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=7.4e-43 Score=325.45 Aligned_cols=321 Identities=26% Similarity=0.331 Sum_probs=249.9
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc----c-------CCcEEEEcchHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV----T-------GKTALVVSPLISLMQDQV 70 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~----~-------~~~~lil~P~~~l~~q~~ 70 (374)
.+.|++. |.+|||.|.+|++.+.+|+++++.||||||||.++.+|++. . +-.+|+++|.++|.+++.
T Consensus 13 ~~~~~~~--~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~ 90 (814)
T COG1201 13 REWFKRK--FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIR 90 (814)
T ss_pred HHHHHHh--cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHH
Confidence 4567774 99999999999999999999999999999999999888764 1 246999999999999988
Q ss_pred HHHH----HcCCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhc--ccCc
Q 037567 71 MSLK----QRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISE--WGHD 144 (374)
Q Consensus 71 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~--~~~~ 144 (374)
+.+. ..|+.+.+.+++.+... .......+|+|+++|||+|..++....-.-.+.++.++||||.|.+.+ .|.+
T Consensus 91 ~rL~~~~~~~G~~v~vRhGDT~~~e-r~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~ 169 (814)
T COG1201 91 RRLEEPLRELGIEVAVRHGDTPQSE-KQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQ 169 (814)
T ss_pred HHHHHHHHHcCCccceecCCCChHH-hhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchh
Confidence 8876 45888877777655544 345566789999999999988887766667789999999999999965 5555
Q ss_pred chHHHHHHHHHHHhcCCCCeeEEEeecCcccHHHHHHhcCCCC-C-eEEEeccCCCceeEEEEeecCC----cchHHHHH
Q 037567 145 FRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLKN-P-YVTIASFDRKNLFYGVKVINRG----QSFVDELV 218 (374)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 218 (374)
.... +.++....++.+.|++|||..+.. ...+++.... + .+...... .+....+...... .......+
T Consensus 170 Lsl~---LeRL~~l~~~~qRIGLSATV~~~~--~varfL~g~~~~~~Iv~~~~~-k~~~i~v~~p~~~~~~~~~~~~~~~ 243 (814)
T COG1201 170 LALS---LERLRELAGDFQRIGLSATVGPPE--EVAKFLVGFGDPCEIVDVSAA-KKLEIKVISPVEDLIYDEELWAALY 243 (814)
T ss_pred hhhh---HHHHHhhCcccEEEeehhccCCHH--HHHHHhcCCCCceEEEEcccC-CcceEEEEecCCccccccchhHHHH
Confidence 4433 344444444789999999999655 5677777665 2 23333222 2222222211111 22334445
Q ss_pred HHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcC-CceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCc
Q 037567 219 QEILKSVAGAGSIIVYCMTIKDVEEISKALKQLG-VKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297 (374)
Q Consensus 219 ~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~ 297 (374)
..+.+.....+.+|||+||+..++.++..|++.+ ..+..+||.++.+.|....++|++|+.+++|||+.++-|||+.++
T Consensus 244 ~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~v 323 (814)
T COG1201 244 ERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDI 323 (814)
T ss_pred HHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCc
Confidence 5555555566799999999999999999999976 788999999999999999999999999999999999999999999
Q ss_pred cEEEEECCCCChhHHHHhhccCCCC-CCceEEEEE
Q 037567 298 RHVIHYGCPKTLESYYQESGRCGRD-GIASVCWLY 331 (374)
Q Consensus 298 ~~vi~~~~p~s~~~~~Q~~GR~~R~-~~~g~~~~~ 331 (374)
+.||+++.|.++..+.||+||+|.. +.....+++
T Consensus 324 dlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii 358 (814)
T COG1201 324 DLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIII 358 (814)
T ss_pred eEEEEeCCcHHHHHHhHhccccccccCCcccEEEE
Confidence 9999999999999999999999964 443444444
No 42
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1.4e-42 Score=334.26 Aligned_cols=311 Identities=23% Similarity=0.318 Sum_probs=232.8
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcC------CCEEEEccCCCCchhhhhcccc---ccCCcEEEEcchHHHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEK------RDCLVVMATGSGKSLCYQLPPL---VTGKTALVVSPLISLMQDQVMS 72 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~------~~~l~~a~tGsGKT~~~~l~~~---~~~~~~lil~P~~~l~~q~~~~ 72 (374)
...|.+.++|. |+|.|.++++.+.++ .+.+++||||||||.+++++++ ..+.+++|++||++|+.|+++.
T Consensus 441 ~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~ 519 (926)
T TIGR00580 441 QQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFET 519 (926)
T ss_pred HHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHH
Confidence 45677889995 999999999999874 6899999999999999887765 3578999999999999999998
Q ss_pred HHHc----CCceEEcCCCCCchh---hhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcc
Q 037567 73 LKQR----GINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDF 145 (374)
Q Consensus 73 ~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~ 145 (374)
+++. +.++..+.+.....+ .......+.++|+|+||..+. ....+.+++++||||+|++..
T Consensus 520 f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~-------~~v~f~~L~llVIDEahrfgv----- 587 (926)
T TIGR00580 520 FKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQ-------KDVKFKDLGLLIIDEEQRFGV----- 587 (926)
T ss_pred HHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhh-------CCCCcccCCEEEeecccccch-----
Confidence 8764 455555554433322 222334567899999995432 223457889999999998532
Q ss_pred hHHHHHHHHHHHhcCCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEe-ccCCCceeEEEEeecCCcchHHHHHHHHHHh
Q 037567 146 RLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTIA-SFDRKNLFYGVKVINRGQSFVDELVQEILKS 224 (374)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (374)
.....+.....+.++++|||||.+.... ....+..+...... ...+..+...+. .... ..+...+.+.
T Consensus 588 ----~~~~~L~~~~~~~~vL~~SATpiprtl~--~~l~g~~d~s~I~~~p~~R~~V~t~v~--~~~~---~~i~~~i~~e 656 (926)
T TIGR00580 588 ----KQKEKLKELRTSVDVLTLSATPIPRTLH--MSMSGIRDLSIIATPPEDRLPVRTFVM--EYDP---ELVREAIRRE 656 (926)
T ss_pred ----hHHHHHHhcCCCCCEEEEecCCCHHHHH--HHHhcCCCcEEEecCCCCccceEEEEE--ecCH---HHHHHHHHHH
Confidence 1122333334578999999998775443 22334444433322 222222222111 1111 2222334444
Q ss_pred hcCCCcEEEEecchhHHHHHHHHHHHc--CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEE
Q 037567 225 VAGAGSIIVYCMTIKDVEEISKALKQL--GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIH 302 (374)
Q Consensus 225 ~~~~~~~lVf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~ 302 (374)
...+++++|||++++.++.+++.|++. +.++..+||+++..+|..++++|.+|+.+|||||+++++|+|+|++++||+
T Consensus 657 l~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi 736 (926)
T TIGR00580 657 LLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIII 736 (926)
T ss_pred HHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEE
Confidence 557899999999999999999999984 678999999999999999999999999999999999999999999999999
Q ss_pred ECCCC-ChhHHHHhhccCCCCCCceEEEEEeeccC
Q 037567 303 YGCPK-TLESYYQESGRCGRDGIASVCWLYYARSN 336 (374)
Q Consensus 303 ~~~p~-s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 336 (374)
+++|. +..+|.||+||+||.|..|.|++++++.+
T Consensus 737 ~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~ 771 (926)
T TIGR00580 737 ERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQK 771 (926)
T ss_pred ecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcc
Confidence 98865 67899999999999999999999987643
No 43
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.5e-45 Score=315.73 Aligned_cols=332 Identities=23% Similarity=0.271 Sum_probs=251.5
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcC-CCEEEEccCCCCchhhhhccccc-----------------cCCc--EEEEcc
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEK-RDCLVVMATGSGKSLCYQLPPLV-----------------TGKT--ALVVSP 61 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~-~~~l~~a~tGsGKT~~~~l~~~~-----------------~~~~--~lil~P 61 (374)
..+|.+ +||..|+++|...+|++..+ .|++=.|.||||||++|-+|++. ++.+ .||++|
T Consensus 193 L~aL~~-~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tP 271 (731)
T KOG0347|consen 193 LRALSN-LGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTP 271 (731)
T ss_pred HHHHHh-cCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecC
Confidence 356777 89999999999999999998 68888999999999999999886 1444 999999
Q ss_pred hHHHHHHHHHHHHHc----CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHH-HHHhcCccEEEEeccc
Q 037567 62 LISLMQDQVMSLKQR----GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS-KLLKAGVCLFAVDEAH 136 (374)
Q Consensus 62 ~~~l~~q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~-~~~~~~~~~vviDE~h 136 (374)
||+|+-|+...+... ++.+..++++......+ ......++|+|+||++|..+++.... ...+..+.++|+||++
T Consensus 272 TRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQq-RlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaD 350 (731)
T KOG0347|consen 272 TRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQ-RLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEAD 350 (731)
T ss_pred hHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHH-HHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHH
Confidence 999999999888754 56666666655444333 34445799999999999887664322 3345678899999999
Q ss_pred hhhcccCcchHHHHHHHHHHHhc--CCCCeeEEEeecCcccHH--------------------HHHHhcCCCCC-eEEEe
Q 037567 137 CISEWGHDFRLEYKQLDKLRTFL--LGVPFVALTATATEKVRI--------------------DIINSLKLKNP-YVTIA 193 (374)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~SaT~~~~~~~--------------------~~~~~~~~~~~-~~~~~ 193 (374)
+|.+.|...... ..+..+.+.. +..|.+.||||..-.... .+....++... .+...
T Consensus 351 RmvekghF~Els-~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~ 429 (731)
T KOG0347|consen 351 RMVEKGHFEELS-KLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDL 429 (731)
T ss_pred HHhhhccHHHHH-HHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEec
Confidence 999988642211 2222222111 257899999996644322 12222222222 11111
Q ss_pred ccCCCceeEEEEeecCCcchHHHHHHHHHHh-------------hcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeec
Q 037567 194 SFDRKNLFYGVKVINRGQSFVDELVQEILKS-------------VAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHG 260 (374)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~ 260 (374)
..+ ......+....+.- ....|++|||||+.+.+.+++-.|...+++...+|+
T Consensus 430 t~q--------------~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA 495 (731)
T KOG0347|consen 430 TPQ--------------SATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHA 495 (731)
T ss_pred Ccc--------------hhHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhcCCCCchhhH
Confidence 110 00011111111110 124588999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCCChhHHHHhhccCCCCCCceEEEEEeeccCCCcc
Q 037567 261 QMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKG 340 (374)
Q Consensus 261 ~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~ 340 (374)
.|..++|-+.++.|.+...-||+||+.+.+|+|+|++.|||+|-.|.+.+-|+||.||+.|.+..|..+.++.+.+...+
T Consensus 496 ~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~ 575 (731)
T KOG0347|consen 496 SMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPL 575 (731)
T ss_pred HHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeccccch
Q 037567 341 DFYCGESQTE 350 (374)
Q Consensus 341 ~~~~~~~~~~ 350 (374)
.++|..++..
T Consensus 576 ~KL~ktL~k~ 585 (731)
T KOG0347|consen 576 KKLCKTLKKK 585 (731)
T ss_pred HHHHHHHhhc
Confidence 9888765543
No 44
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=9.5e-42 Score=324.54 Aligned_cols=309 Identities=23% Similarity=0.289 Sum_probs=230.8
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcC------CCEEEEccCCCCchhhhhccccc---cCCcEEEEcchHHHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEK------RDCLVVMATGSGKSLCYQLPPLV---TGKTALVVSPLISLMQDQVMS 72 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~------~~~l~~a~tGsGKT~~~~l~~~~---~~~~~lil~P~~~l~~q~~~~ 72 (374)
++++...++|. |+++|.++++.+.++ .+.+++||||||||++|+++++. .+.+++|++||++|+.|+++.
T Consensus 251 ~~~~~~~l~f~-lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~ 329 (681)
T PRK10917 251 LKKFLASLPFE-LTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYEN 329 (681)
T ss_pred HHHHHHhCCCC-CCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHH
Confidence 45677789995 999999999999875 37899999999999999887754 578999999999999999999
Q ss_pred HHHc----CCceEEcCCCCCchh---hhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcc
Q 037567 73 LKQR----GINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDF 145 (374)
Q Consensus 73 ~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~ 145 (374)
++++ ++++..++++..... .......+.++|+|+||+.+.. ...+.+++++|+||+|++...
T Consensus 330 l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-------~v~~~~l~lvVIDE~Hrfg~~---- 398 (681)
T PRK10917 330 LKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-------DVEFHNLGLVIIDEQHRFGVE---- 398 (681)
T ss_pred HHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-------cchhcccceEEEechhhhhHH----
Confidence 8764 577777777665432 2334455679999999987643 234578899999999986421
Q ss_pred hHHHHHHHHHHHhcCCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEe-ccCCCceeEEEEeecCCcchHHHHHHHHHHh
Q 037567 146 RLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTIA-SFDRKNLFYGVKVINRGQSFVDELVQEILKS 224 (374)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (374)
....+.....+.++++|||||.+.... ...++..+...... ...+..+... ... ......++..+.+.
T Consensus 399 -----qr~~l~~~~~~~~iL~~SATp~prtl~--~~~~g~~~~s~i~~~p~~r~~i~~~--~~~--~~~~~~~~~~i~~~ 467 (681)
T PRK10917 399 -----QRLALREKGENPHVLVMTATPIPRTLA--MTAYGDLDVSVIDELPPGRKPITTV--VIP--DSRRDEVYERIREE 467 (681)
T ss_pred -----HHHHHHhcCCCCCEEEEeCCCCHHHHH--HHHcCCCceEEEecCCCCCCCcEEE--EeC--cccHHHHHHHHHHH
Confidence 112222333357899999999775432 22223222222211 1112222111 111 22234444555555
Q ss_pred hcCCCcEEEEecchh--------HHHHHHHHHHHc--CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccc
Q 037567 225 VAGAGSIIVYCMTIK--------DVEEISKALKQL--GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294 (374)
Q Consensus 225 ~~~~~~~lVf~~~~~--------~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~ 294 (374)
...+++++|||+..+ .++.+++.|.+. +.++..+||+++..+|..++++|.+|+.+|||||+++++|+|+
T Consensus 468 ~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDi 547 (681)
T PRK10917 468 IAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDV 547 (681)
T ss_pred HHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCccc
Confidence 567889999999543 456677777765 4689999999999999999999999999999999999999999
Q ss_pred cCccEEEEECCCC-ChhHHHHhhccCCCCCCceEEEEEee
Q 037567 295 PDVRHVIHYGCPK-TLESYYQESGRCGRDGIASVCWLYYA 333 (374)
Q Consensus 295 ~~~~~vi~~~~p~-s~~~~~Q~~GR~~R~~~~g~~~~~~~ 333 (374)
|++++||++++|. ....+.|++||+||.|..|.|++++.
T Consensus 548 p~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 548 PNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred CCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 9999999999986 57889999999999999999999985
No 45
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=2.5e-42 Score=332.46 Aligned_cols=321 Identities=20% Similarity=0.283 Sum_probs=227.3
Q ss_pred hhHHHhHcCCCCCchhHHHHHHH-HHcCCCEEEEccCCCCchhhhhccccc----cCCcEEEEcchHHHHHHHHHHHHHc
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQR-IIEKRDCLVVMATGSGKSLCYQLPPLV----TGKTALVVSPLISLMQDQVMSLKQR 76 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~-~~~~~~~l~~a~tGsGKT~~~~l~~~~----~~~~~lil~P~~~l~~q~~~~~~~~ 76 (374)
.+.|++ .||.+|+|+|.++++. +.+++++++++|||||||+++.++++. .+.++++++|+++|+.|+++.+..+
T Consensus 13 ~~~l~~-~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~~ 91 (720)
T PRK00254 13 KRVLKE-RGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKDW 91 (720)
T ss_pred HHHHHh-CCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHHH
Confidence 456677 8999999999999986 788999999999999999999887654 4779999999999999999888753
Q ss_pred ---CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHH
Q 037567 77 ---GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLD 153 (374)
Q Consensus 77 ---~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~ 153 (374)
|..+...+++...... ..+.++|+|+||+++..+... ....++++++||+||+|.+.+.+.. ..+.
T Consensus 92 ~~~g~~v~~~~Gd~~~~~~----~~~~~~IiV~Tpe~~~~ll~~--~~~~l~~l~lvViDE~H~l~~~~rg-----~~le 160 (720)
T PRK00254 92 EKLGLRVAMTTGDYDSTDE----WLGKYDIIIATAEKFDSLLRH--GSSWIKDVKLVVADEIHLIGSYDRG-----ATLE 160 (720)
T ss_pred hhcCCEEEEEeCCCCCchh----hhccCCEEEEcHHHHHHHHhC--CchhhhcCCEEEEcCcCccCCccch-----HHHH
Confidence 6666666665443221 224579999999998766543 2234678999999999999765443 2222
Q ss_pred HHHHh-cCCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCC-ceeE-EEEeecCC-c-chHHHHHHHHHHhhcCC
Q 037567 154 KLRTF-LLGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRK-NLFY-GVKVINRG-Q-SFVDELVQEILKSVAGA 228 (374)
Q Consensus 154 ~~~~~-~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~-~-~~~~~~~~~~~~~~~~~ 228 (374)
.+... ..+.+++++|||+++. .++..|++.............. .+.. ........ . .........+.+....+
T Consensus 161 ~il~~l~~~~qiI~lSATl~n~--~~la~wl~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 238 (720)
T PRK00254 161 MILTHMLGRAQILGLSATVGNA--EELAEWLNAELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVKKG 238 (720)
T ss_pred HHHHhcCcCCcEEEEEccCCCH--HHHHHHhCCccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHHhC
Confidence 22222 2368999999999764 3567777643211100000000 0000 00001110 0 00111222233333467
Q ss_pred CcEEEEecchhHHHHHHHHHHHc---------------------------------CCceeeeecCCChHHHHHHHHhhh
Q 037567 229 GSIIVYCMTIKDVEEISKALKQL---------------------------------GVKAGTYHGQMGSKAREEAHRLFI 275 (374)
Q Consensus 229 ~~~lVf~~~~~~~~~l~~~l~~~---------------------------------~~~~~~~~~~~~~~~r~~~~~~f~ 275 (374)
+++||||+++..++.++..+.+. ...+.++|++++.++|..+.+.|+
T Consensus 239 ~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~ 318 (720)
T PRK00254 239 KGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFR 318 (720)
T ss_pred CCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHH
Confidence 89999999999998877666321 224889999999999999999999
Q ss_pred cCCeeEEEEeccccccccccCccEEEE-------ECCCC-ChhHHHHhhccCCCCC--CceEEEEEeeccC
Q 037567 276 RDEIRVMVATMAFGMGIDKPDVRHVIH-------YGCPK-TLESYYQESGRCGRDG--IASVCWLYYARSN 336 (374)
Q Consensus 276 ~g~~~ilv~t~~~~~G~d~~~~~~vi~-------~~~p~-s~~~~~Q~~GR~~R~~--~~g~~~~~~~~~~ 336 (374)
+|.++|||||+.+++|+|+|..++||. ++.|. +..+|.||+|||||.| ..|.++++....+
T Consensus 319 ~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 319 EGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred CCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 999999999999999999999999883 33332 5679999999999975 5688888887654
No 46
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=9.9e-42 Score=322.52 Aligned_cols=308 Identities=23% Similarity=0.278 Sum_probs=226.8
Q ss_pred hHHHhHcCCCCCchhHHHHHHHHHcC------CCEEEEccCCCCchhhhhccccc---cCCcEEEEcchHHHHHHHHHHH
Q 037567 3 STLKKYFGYSVFRPYQKDVIQRIIEK------RDCLVVMATGSGKSLCYQLPPLV---TGKTALVVSPLISLMQDQVMSL 73 (374)
Q Consensus 3 ~~l~~~~~~~~~~~~Q~~~~~~~~~~------~~~l~~a~tGsGKT~~~~l~~~~---~~~~~lil~P~~~l~~q~~~~~ 73 (374)
.++.+.++| +|++.|.++++.+.++ .+.+++||||||||.+|+++++. .+.++++++||++|+.|+++.+
T Consensus 226 ~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~ 304 (630)
T TIGR00643 226 TKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSL 304 (630)
T ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHH
Confidence 455566999 6999999999999875 25799999999999998877654 5789999999999999999988
Q ss_pred HHc----CCceEEcCCCCCchh---hhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcch
Q 037567 74 KQR----GINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFR 146 (374)
Q Consensus 74 ~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~ 146 (374)
+++ |+++..++++..... .......+.++|+|+||..+.. ...+.+++++|+||+|++...
T Consensus 305 ~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-------~~~~~~l~lvVIDEaH~fg~~----- 372 (630)
T TIGR00643 305 RNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-------KVEFKRLALVIIDEQHRFGVE----- 372 (630)
T ss_pred HHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-------cccccccceEEEechhhccHH-----
Confidence 764 577777777655443 2334455778999999987642 234578899999999986421
Q ss_pred HHHHHHHHHHHhcC---CCCeeEEEeecCcccHHHHHHhcCCCCCe-EEEeccCCCceeEEEEeecCCcchHHHHHHHHH
Q 037567 147 LEYKQLDKLRTFLL---GVPFVALTATATEKVRIDIINSLKLKNPY-VTIASFDRKNLFYGVKVINRGQSFVDELVQEIL 222 (374)
Q Consensus 147 ~~~~~~~~~~~~~~---~~~~i~~SaT~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (374)
....+..... +.++++|||||.+.... ....+..+.. +......+..+... .... .....++..+.
T Consensus 373 ----qr~~l~~~~~~~~~~~~l~~SATp~prtl~--l~~~~~l~~~~i~~~p~~r~~i~~~--~~~~--~~~~~~~~~i~ 442 (630)
T TIGR00643 373 ----QRKKLREKGQGGFTPHVLVMSATPIPRTLA--LTVYGDLDTSIIDELPPGRKPITTV--LIKH--DEKDIVYEFIE 442 (630)
T ss_pred ----HHHHHHHhcccCCCCCEEEEeCCCCcHHHH--HHhcCCcceeeeccCCCCCCceEEE--EeCc--chHHHHHHHHH
Confidence 1112222222 57899999998775432 1222211111 11111111111111 1111 22245555555
Q ss_pred HhhcCCCcEEEEecch--------hHHHHHHHHHHHc--CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccc
Q 037567 223 KSVAGAGSIIVYCMTI--------KDVEEISKALKQL--GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292 (374)
Q Consensus 223 ~~~~~~~~~lVf~~~~--------~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~ 292 (374)
+....+.+++|||+.. ..++.+++.|.+. +..+..+||+++.++|..+++.|++|+.+|||||+++++|+
T Consensus 443 ~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~Gv 522 (630)
T TIGR00643 443 EEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGV 522 (630)
T ss_pred HHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCc
Confidence 5556788999999876 4466777777763 67899999999999999999999999999999999999999
Q ss_pred cccCccEEEEECCCC-ChhHHHHhhccCCCCCCceEEEEEee
Q 037567 293 DKPDVRHVIHYGCPK-TLESYYQESGRCGRDGIASVCWLYYA 333 (374)
Q Consensus 293 d~~~~~~vi~~~~p~-s~~~~~Q~~GR~~R~~~~g~~~~~~~ 333 (374)
|+|++++||+++.|. +...+.|++||+||.|..|.|++++.
T Consensus 523 DiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 523 DVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred ccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 999999999999886 67899999999999999999999984
No 47
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.4e-43 Score=323.48 Aligned_cols=337 Identities=22% Similarity=0.309 Sum_probs=264.0
Q ss_pred hHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc-----------cCCcEEEEcchHHHHHHHHH
Q 037567 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV-----------TGKTALVVSPLISLMQDQVM 71 (374)
Q Consensus 3 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~-----------~~~~~lil~P~~~l~~q~~~ 71 (374)
..+ +.+||.+++|+|.+|||++..|+++|.+|.||||||++|++|++. .++.++|++||++|+.|..+
T Consensus 378 ~tl-kkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r 456 (997)
T KOG0334|consen 378 ETL-KKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHR 456 (997)
T ss_pred HHH-HHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHH
Confidence 345 449999999999999999999999999999999999999999875 27889999999999999999
Q ss_pred HHHHc----CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHH-HhcCccEEEEeccchhhcccCcch
Q 037567 72 SLKQR----GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKL-LKAGVCLFAVDEAHCISEWGHDFR 146 (374)
Q Consensus 72 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~-~~~~~~~vviDE~h~~~~~~~~~~ 146 (374)
++..| ++.+..+.+.............+ .+|+|+||+++.+++-.....+ .+....++|+||++++.+.+++..
T Consensus 457 ~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg-~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq 535 (997)
T KOG0334|consen 457 EVRKFLKLLGIRVVCVYGGSGISQQIAELKRG-AEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQ 535 (997)
T ss_pred HHHHHHhhcCceEEEecCCccHHHHHHHHhcC-CceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcc
Confidence 98876 66666666655555555555445 9999999999988765522222 223445999999999998776642
Q ss_pred HHHHHHHHHHHhcCCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEe--ccCCCceeEEEEeecCCcchHHHHHHHHHHh
Q 037567 147 LEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTIA--SFDRKNLFYGVKVINRGQSFVDELVQEILKS 224 (374)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (374)
... -+....+..|.+++|||.+.... .+.......+..+... +.....+...+.+.......+..++ +++..
T Consensus 536 ~~~----Ii~nlrpdrQtvlfSatfpr~m~-~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~-eLl~e 609 (997)
T KOG0334|consen 536 ITR----ILQNLRPDRQTVLFSATFPRSME-ALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLL-ELLGE 609 (997)
T ss_pred cch----HHhhcchhhhhhhhhhhhhHHHH-HHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHH-HHHHH
Confidence 221 22223457899999999998844 3333332232222222 2223344444555554444444433 33444
Q ss_pred hcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEEC
Q 037567 225 VAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYG 304 (374)
Q Consensus 225 ~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~ 304 (374)
....+++||||.+...|..+.+.|.+.|+.+..+||+.+..+|..++++|+++...+|++|+.+.+|+|++.+..||+|+
T Consensus 610 ~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd 689 (997)
T KOG0334|consen 610 RYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYD 689 (997)
T ss_pred HhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHhhccCCCCCCceEEEEEeeccCCCcccceeccc
Q 037567 305 CPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGES 347 (374)
Q Consensus 305 ~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~ 347 (374)
+|....+|+||.||+||.|..|.+++|..+++......++...
T Consensus 690 ~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al 732 (997)
T KOG0334|consen 690 FPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKAL 732 (997)
T ss_pred cchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHH
Confidence 9999999999999999999999999999998888877776644
No 48
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=8.7e-42 Score=327.45 Aligned_cols=326 Identities=20% Similarity=0.255 Sum_probs=225.0
Q ss_pred HHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc---cCCcEEEEcchHHHHHHHHHHHHHc---C
Q 037567 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV---TGKTALVVSPLISLMQDQVMSLKQR---G 77 (374)
Q Consensus 4 ~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~---~~~~~lil~P~~~l~~q~~~~~~~~---~ 77 (374)
.+.+ .+|. ++|+|.++++.+.+++++++++|||||||+++.++++. .+.++++++|+++|+.|++++++++ |
T Consensus 15 ~~~~-~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~~~~~~l~~~g 92 (674)
T PRK01172 15 LFTG-NDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYEELSRLRSLG 92 (674)
T ss_pred HHhh-CCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHHHHHHhhcC
Confidence 3444 5776 99999999999999999999999999999998877654 4788999999999999999988754 5
Q ss_pred CceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHH
Q 037567 78 INAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRT 157 (374)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~ 157 (374)
..+....++...... ....++|+|+||+++..+..+ ....+.+++++|+||+|.+.+.+...... ..+..+..
T Consensus 93 ~~v~~~~G~~~~~~~----~~~~~dIiv~Tpek~~~l~~~--~~~~l~~v~lvViDEaH~l~d~~rg~~le-~ll~~~~~ 165 (674)
T PRK01172 93 MRVKISIGDYDDPPD----FIKRYDVVILTSEKADSLIHH--DPYIINDVGLIVADEIHIIGDEDRGPTLE-TVLSSARY 165 (674)
T ss_pred CeEEEEeCCCCCChh----hhccCCEEEECHHHHHHHHhC--ChhHHhhcCEEEEecchhccCCCccHHHH-HHHHHHHh
Confidence 555555544332211 123469999999998776554 23456789999999999997644332111 12223333
Q ss_pred hcCCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEE----Ee-ecCCcchHHHHHHHHHHhhcCCCcEE
Q 037567 158 FLLGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGV----KV-INRGQSFVDELVQEILKSVAGAGSII 232 (374)
Q Consensus 158 ~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~l 232 (374)
..++.+++++|||+++.. ++..|++..... .......+.... .. ..............+.+...+++++|
T Consensus 166 ~~~~~riI~lSATl~n~~--~la~wl~~~~~~---~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vL 240 (674)
T PRK01172 166 VNPDARILALSATVSNAN--ELAQWLNASLIK---SNFRPVPLKLGILYRKRLILDGYERSQVDINSLIKETVNDGGQVL 240 (674)
T ss_pred cCcCCcEEEEeCccCCHH--HHHHHhCCCccC---CCCCCCCeEEEEEecCeeeecccccccccHHHHHHHHHhCCCcEE
Confidence 335789999999997643 566776543211 000000011000 00 11111111111222222244688999
Q ss_pred EEecchhHHHHHHHHHHHcC-------------------------CceeeeecCCChHHHHHHHHhhhcCCeeEEEEecc
Q 037567 233 VYCMTIKDVEEISKALKQLG-------------------------VKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMA 287 (374)
Q Consensus 233 Vf~~~~~~~~~l~~~l~~~~-------------------------~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~ 287 (374)
|||++++.++.+++.|.+.. ..+..+||+++.++|..+.+.|++|.++|||||+.
T Consensus 241 VF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~ 320 (674)
T PRK01172 241 VFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPT 320 (674)
T ss_pred EEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecch
Confidence 99999999999998886531 24678999999999999999999999999999999
Q ss_pred ccccccccCccEEEEECC---------CCChhHHHHhhccCCCCCC--ceEEEEEeeccC-CCccccee
Q 037567 288 FGMGIDKPDVRHVIHYGC---------PKTLESYYQESGRCGRDGI--ASVCWLYYARSN-FAKGDFYC 344 (374)
Q Consensus 288 ~~~G~d~~~~~~vi~~~~---------p~s~~~~~Q~~GR~~R~~~--~g~~~~~~~~~~-~~~~~~~~ 344 (374)
+++|+|+|+..+|| .+. |.+..+|.||+|||||.|. .|.+++++...+ ++.+++++
T Consensus 321 la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l 388 (674)
T PRK01172 321 LAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYL 388 (674)
T ss_pred hhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHH
Confidence 99999999865555 332 4578899999999999984 555666654433 44454554
No 49
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.2e-40 Score=327.78 Aligned_cols=310 Identities=20% Similarity=0.253 Sum_probs=227.7
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcC------CCEEEEccCCCCchhhhhcccc---ccCCcEEEEcchHHHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEK------RDCLVVMATGSGKSLCYQLPPL---VTGKTALVVSPLISLMQDQVMS 72 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~------~~~l~~a~tGsGKT~~~~l~~~---~~~~~~lil~P~~~l~~q~~~~ 72 (374)
..++...|+| +|++.|.++++.+.++ .+.+++|+||+|||.+++.++. ..+.+++|++||++|+.|+++.
T Consensus 590 ~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~ 668 (1147)
T PRK10689 590 YQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDN 668 (1147)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHH
Confidence 3567777999 5999999999999886 7899999999999987665543 4688999999999999999998
Q ss_pred HHHc----CCceEEcCCCCCchhhh---hhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcc
Q 037567 73 LKQR----GINAEFLGSAQTDSSVQ---TKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDF 145 (374)
Q Consensus 73 ~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~ 145 (374)
+++. ++.+..+.+..+..+.. .....+.++|+|+||+.+.. ...+.+++++||||+|++. ..
T Consensus 669 f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~-------~v~~~~L~lLVIDEahrfG---~~- 737 (1147)
T PRK10689 669 FRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQS-------DVKWKDLGLLIVDEEHRFG---VR- 737 (1147)
T ss_pred HHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhC-------CCCHhhCCEEEEechhhcc---hh-
Confidence 8753 34444444433333222 22234678999999975421 2234678999999999973 21
Q ss_pred hHHHHHHHHHHHhcCCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEecc-CCCceeEEEEeecCCcchHHHHHHHHHHh
Q 037567 146 RLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTIASF-DRKNLFYGVKVINRGQSFVDELVQEILKS 224 (374)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (374)
....+.....+.++++|||||.+..... ...+..++.+..... .+..+....... . . ......++..
T Consensus 738 -----~~e~lk~l~~~~qvLl~SATpiprtl~l--~~~gl~d~~~I~~~p~~r~~v~~~~~~~-~-~---~~~k~~il~e 805 (1147)
T PRK10689 738 -----HKERIKAMRADVDILTLTATPIPRTLNM--AMSGMRDLSIIATPPARRLAVKTFVREY-D-S---LVVREAILRE 805 (1147)
T ss_pred -----HHHHHHhcCCCCcEEEEcCCCCHHHHHH--HHhhCCCcEEEecCCCCCCCceEEEEec-C-c---HHHHHHHHHH
Confidence 1223333445789999999998765432 223344444333222 222221111111 1 1 1122334444
Q ss_pred hcCCCcEEEEecchhHHHHHHHHHHHc--CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEE
Q 037567 225 VAGAGSIIVYCMTIKDVEEISKALKQL--GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIH 302 (374)
Q Consensus 225 ~~~~~~~lVf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~ 302 (374)
...+++++|||++++.++.+++.|++. +..+..+||+|+.++|..++.+|.+|+.+|||||+++++|+|+|++++||.
T Consensus 806 l~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi 885 (1147)
T PRK10689 806 ILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII 885 (1147)
T ss_pred HhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEE
Confidence 456789999999999999999999986 678999999999999999999999999999999999999999999999996
Q ss_pred ECCC-CChhHHHHhhccCCCCCCceEEEEEeecc
Q 037567 303 YGCP-KTLESYYQESGRCGRDGIASVCWLYYARS 335 (374)
Q Consensus 303 ~~~p-~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 335 (374)
.... .+..+|.|++||+||.|+.|.|++++...
T Consensus 886 ~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 886 ERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred ecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 5543 46788999999999999999999888653
No 50
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.9e-42 Score=299.33 Aligned_cols=336 Identities=21% Similarity=0.252 Sum_probs=251.3
Q ss_pred hHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcccccc-----------CCcEEEEcchHHHHHHHHH
Q 037567 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVT-----------GKTALVVSPLISLMQDQVM 71 (374)
Q Consensus 3 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~-----------~~~~lil~P~~~l~~q~~~ 71 (374)
+++.. .+|++|+|.|.+++|.++++++++.+||||||||++|.+|++.+ +.+++|+.|+++|+.|.++
T Consensus 149 ~nl~~-~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~r 227 (593)
T KOG0344|consen 149 ENLQE-LGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYR 227 (593)
T ss_pred HhHhh-CCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHH
Confidence 45556 79999999999999999999999999999999999999998752 4689999999999999999
Q ss_pred HHHHcCCce--E----EcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcc
Q 037567 72 SLKQRGINA--E----FLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDF 145 (374)
Q Consensus 72 ~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~ 145 (374)
++..+..+. . ...................++++++||-++...+......+.+.++..+|+||++.+.+. ..+
T Consensus 228 e~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~-~~f 306 (593)
T KOG0344|consen 228 EMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEP-EFF 306 (593)
T ss_pred HHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhCh-hhH
Confidence 999875331 1 111111122222333445679999999987766554333457788999999999999875 223
Q ss_pred hHHHHHHHHHHHhcCCCCeeEEEeecCcccHHHHHHhcCCCCCe-EEEeccCCCceeEEE-EeecCCcchHHHHHHHHHH
Q 037567 146 RLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPY-VTIASFDRKNLFYGV-KVINRGQSFVDELVQEILK 223 (374)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 223 (374)
...+..+-..+.. ++..+-+||||.+....+ +..+...+.. +.+...+..+..... ..+........-.+..++.
T Consensus 307 ~~Qla~I~sac~s-~~i~~a~FSat~~~~VEE--~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~ 383 (593)
T KOG0344|consen 307 VEQLADIYSACQS-PDIRVALFSATISVYVEE--WAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVA 383 (593)
T ss_pred HHHHHHHHHHhcC-cchhhhhhhccccHHHHH--HHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHh
Confidence 3223333333332 567788999999887753 3333333333 333322222111111 1122222222333444444
Q ss_pred hhcCCCcEEEEecchhHHHHHHHHH-HHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEE
Q 037567 224 SVAGAGSIIVYCMTIKDVEEISKAL-KQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIH 302 (374)
Q Consensus 224 ~~~~~~~~lVf~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~ 302 (374)
.. -.-+++||+.+.+.+..|...| .-.++++..+||+.+..+|...++.|+.|++.+|+||+.+++|+|+.+++.||+
T Consensus 384 ~g-~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VIn 462 (593)
T KOG0344|consen 384 SG-FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVIN 462 (593)
T ss_pred cc-CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEe
Confidence 42 4578999999999999999999 567889999999999999999999999999999999999999999999999999
Q ss_pred ECCCCChhHHHHhhccCCCCCCceEEEEEeeccCCCccccee
Q 037567 303 YGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYC 344 (374)
Q Consensus 303 ~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~ 344 (374)
+|.|.+...|+||+||+||.|+.|.+++||+..|+..++-+.
T Consensus 463 yD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~ia 504 (593)
T KOG0344|consen 463 YDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIA 504 (593)
T ss_pred cCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHH
Confidence 999999999999999999999999999999999988776653
No 51
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=3.8e-41 Score=296.47 Aligned_cols=320 Identities=18% Similarity=0.219 Sum_probs=251.3
Q ss_pred HHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc------cCCcEEEEcchHHHHHHHHHHHHHcCC
Q 037567 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV------TGKTALVVSPLISLMQDQVMSLKQRGI 78 (374)
Q Consensus 5 l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~------~~~~~lil~P~~~l~~q~~~~~~~~~~ 78 (374)
|++ .+|..|+++|..|+|.++.+-|.|+.+..|+|||++|...++. .....+||+|||+++-|+.+.+...++
T Consensus 40 lrr-n~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~ 118 (980)
T KOG4284|consen 40 LRR-NAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAP 118 (980)
T ss_pred HHh-hcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcc
Confidence 444 6999999999999999999999999999999999999877775 367899999999999999999887643
Q ss_pred -----ceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHH
Q 037567 79 -----NAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLD 153 (374)
Q Consensus 79 -----~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~ 153 (374)
...++.++...... ......++|+|+||+++..+... +..+..+++++|+|||+.+.+.+.. -..++
T Consensus 119 sf~g~~csvfIGGT~~~~d--~~rlk~~rIvIGtPGRi~qL~el--~~~n~s~vrlfVLDEADkL~~t~sf----q~~In 190 (980)
T KOG4284|consen 119 SFTGARCSVFIGGTAHKLD--LIRLKQTRIVIGTPGRIAQLVEL--GAMNMSHVRLFVLDEADKLMDTESF----QDDIN 190 (980)
T ss_pred cccCcceEEEecCchhhhh--hhhhhhceEEecCchHHHHHHHh--cCCCccceeEEEeccHHhhhchhhH----HHHHH
Confidence 44445444333332 23335578999999999877554 5667789999999999999874322 15667
Q ss_pred HHHHhcC-CCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEE--EEeecC---C---cchHHHHHHHHHHh
Q 037567 154 KLRTFLL-GVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYG--VKVINR---G---QSFVDELVQEILKS 224 (374)
Q Consensus 154 ~~~~~~~-~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~---~~~~~~~~~~~~~~ 224 (374)
.+...+| ..+++++|||.+......+...+ -++..+.....+..-+... +..... . .....+.+.++.+.
T Consensus 191 ~ii~slP~~rQv~a~SATYp~nLdn~Lsk~m-rdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ 269 (980)
T KOG4284|consen 191 IIINSLPQIRQVAAFSATYPRNLDNLLSKFM-RDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKS 269 (980)
T ss_pred HHHHhcchhheeeEEeccCchhHHHHHHHHh-cccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhh
Confidence 6777666 68899999999998775444433 2333333333222221111 111111 1 12244556666666
Q ss_pred hcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEEC
Q 037567 225 VAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYG 304 (374)
Q Consensus 225 ~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~ 304 (374)
+ +..+.||||+....|+-++..|+..|+++-++.|.|+.++|...+..++.-..+|||+|+..++|+|-++++.||+.|
T Consensus 270 i-py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD 348 (980)
T KOG4284|consen 270 I-PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNID 348 (980)
T ss_pred C-chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecC
Confidence 5 678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHhhccCCCCCCceEEEEEeecc
Q 037567 305 CPKTLESYYQESGRCGRDGIASVCWLYYARS 335 (374)
Q Consensus 305 ~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 335 (374)
+|.+..+|.||||||||+|..|.+++++...
T Consensus 349 ~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~ 379 (980)
T KOG4284|consen 349 APADEETYFHRIGRAGRFGAHGAAVTLLEDE 379 (980)
T ss_pred CCcchHHHHHHhhhcccccccceeEEEeccc
Confidence 9999999999999999999999999988764
No 52
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=1.3e-39 Score=300.69 Aligned_cols=297 Identities=17% Similarity=0.130 Sum_probs=207.4
Q ss_pred CCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccc---ccc-CCcEEEEcchHHHHHHHHHHHHHcCCc----eEEc
Q 037567 12 SVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPP---LVT-GKTALVVSPLISLMQDQVMSLKQRGIN----AEFL 83 (374)
Q Consensus 12 ~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~---~~~-~~~~lil~P~~~l~~q~~~~~~~~~~~----~~~~ 83 (374)
..|+++|.++++.+++++++++++|||+|||.++...+ +.+ ..++||++|+++|+.||.+.+.+++.. ...+
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i 192 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKI 192 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEE
Confidence 47999999999999999999999999999998764332 223 348999999999999999999987532 1112
Q ss_pred CCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcC-CC
Q 037567 84 GSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLL-GV 162 (374)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~-~~ 162 (374)
.++... ....+|+|+||+++.... ...+.++++||+||||++.... +..+....+ ..
T Consensus 193 ~~g~~~--------~~~~~I~VaT~qsl~~~~-----~~~~~~~~~iIvDEaH~~~~~~---------~~~il~~~~~~~ 250 (501)
T PHA02558 193 YSGTAK--------DTDAPIVVSTWQSAVKQP-----KEWFDQFGMVIVDECHLFTGKS---------LTSIITKLDNCK 250 (501)
T ss_pred ecCccc--------CCCCCEEEeeHHHHhhch-----hhhccccCEEEEEchhcccchh---------HHHHHHhhhccc
Confidence 121111 123689999999886542 2235788999999999986522 233333333 46
Q ss_pred CeeEEEeecCcccHHH--HHHhcCCCCCeEEEecc----CC---CceeEE-EEe--------------ec------CCcc
Q 037567 163 PFVALTATATEKVRID--IINSLKLKNPYVTIASF----DR---KNLFYG-VKV--------------IN------RGQS 212 (374)
Q Consensus 163 ~~i~~SaT~~~~~~~~--~~~~~~~~~~~~~~~~~----~~---~~~~~~-~~~--------------~~------~~~~ 212 (374)
++++|||||....... +...++ +....... .. ...... +.. +. ....
T Consensus 251 ~~lGLTATp~~~~~~~~~~~~~fG---~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 327 (501)
T PHA02558 251 FKFGLTGSLRDGKANILQYVGLFG---DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHT 327 (501)
T ss_pred eEEEEeccCCCccccHHHHHHhhC---CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccH
Confidence 7999999997643211 111121 11100000 00 000000 000 00 0001
Q ss_pred hHHHHHHHHHH-hhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEe-ccccc
Q 037567 213 FVDELVQEILK-SVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVAT-MAFGM 290 (374)
Q Consensus 213 ~~~~~~~~~~~-~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t-~~~~~ 290 (374)
....++..+.. ....+.+++||+.+.++++.+++.|.+.+.++..+||+++.++|..+++.|++|+..+||+| +.+++
T Consensus 328 ~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~e 407 (501)
T PHA02558 328 KRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFST 407 (501)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecc
Confidence 11122222222 22356889999999999999999999999999999999999999999999999998899988 79999
Q ss_pred cccccCccEEEEECCCCChhHHHHhhccCCCCCCceEEEEEee
Q 037567 291 GIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYA 333 (374)
Q Consensus 291 G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~ 333 (374)
|+|+|++++||+..++.|...|+||+||++|.+.++....+++
T Consensus 408 G~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D 450 (501)
T PHA02558 408 GISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWD 450 (501)
T ss_pred ccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEE
Confidence 9999999999999999999999999999999987654444443
No 53
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.8e-41 Score=279.37 Aligned_cols=324 Identities=20% Similarity=0.287 Sum_probs=254.5
Q ss_pred cCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcccccc------CCcEEEEcchHHHHHHHHHHHHHcCCce--
Q 037567 9 FGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVT------GKTALVVSPLISLMQDQVMSLKQRGINA-- 80 (374)
Q Consensus 9 ~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~------~~~~lil~P~~~l~~q~~~~~~~~~~~~-- 80 (374)
+||++|+.+|..|+.....|.++...+.+|+|||.+|..++++. ...+++++|+++|+.|........|...
T Consensus 44 yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~ 123 (397)
T KOG0327|consen 44 YGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDV 123 (397)
T ss_pred hccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccce
Confidence 78999999999999999999999999999999999998888863 6679999999999999997777664333
Q ss_pred --EEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHh
Q 037567 81 --EFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTF 158 (374)
Q Consensus 81 --~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~ 158 (374)
..+.++..............++|+++||++...+++. ..+....+.++|+||++.+...|+. ..+..+...
T Consensus 124 ~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~--~~l~~~~iKmfvlDEaDEmLs~gfk-----dqI~~if~~ 196 (397)
T KOG0327|consen 124 SVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNR--GSLSTDGIKMFVLDEADEMLSRGFK-----DQIYDIFQE 196 (397)
T ss_pred eeeeecCcccchhhhhhhhccCceeecCCchhHHHhhcc--ccccccceeEEeecchHhhhccchH-----HHHHHHHHH
Confidence 2233333333333444556689999999999888776 3566677999999999999887765 666666666
Q ss_pred cC-CCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCcee-EEEEeecCCcchHHHHHHHHHHhhcCCCcEEEEec
Q 037567 159 LL-GVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLF-YGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236 (374)
Q Consensus 159 ~~-~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~ 236 (374)
.+ +.|++++|||.+..... +...+ ..++..+....+..... ....+.......+.+.+.++.+ .-.+.+|||+
T Consensus 197 lp~~vQv~l~SAT~p~~vl~-vt~~f-~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~~---~~~q~~if~n 271 (397)
T KOG0327|consen 197 LPSDVQVVLLSATMPSDVLE-VTKKF-MREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDLYR---RVTQAVIFCN 271 (397)
T ss_pred cCcchhheeecccCcHHHHH-HHHHh-ccCceEEEecchhhhhhheeeeeeeccccccccHHHHHHH---hhhcceEEec
Confidence 65 68999999999988764 33333 33444333322221111 1111111111113444444544 5578899999
Q ss_pred chhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCCChhHHHHhh
Q 037567 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQES 316 (374)
Q Consensus 237 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~ 316 (374)
+...+..+...|.+++..+..+|+++...+|..++..|+.|..+|||+|+.+++|+|+..+..|++++.|....+|.||+
T Consensus 272 t~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~ 351 (397)
T KOG0327|consen 272 TRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRI 351 (397)
T ss_pred chhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCceEEEEEeeccCCCccccee
Q 037567 317 GRCGRDGIASVCWLYYARSNFAKGDFYC 344 (374)
Q Consensus 317 GR~~R~~~~g~~~~~~~~~~~~~~~~~~ 344 (374)
||+||.|.+|.++.++...+.+.++.+.
T Consensus 352 gr~gr~grkg~~in~v~~~d~~~lk~ie 379 (397)
T KOG0327|consen 352 GRAGRFGRKGVAINFVTEEDVRDLKDIE 379 (397)
T ss_pred ccccccCCCceeeeeehHhhHHHHHhHH
Confidence 9999999999999999998876655544
No 54
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.2e-38 Score=299.07 Aligned_cols=318 Identities=19% Similarity=0.174 Sum_probs=208.8
Q ss_pred hHHHhHcCCCCCchhHHHHHHHHHcCC-CEEEEccCCCCchhhh---hccccc--cCC-cEEEEcchHHHHHHHHHHHHH
Q 037567 3 STLKKYFGYSVFRPYQKDVIQRIIEKR-DCLVVMATGSGKSLCY---QLPPLV--TGK-TALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 3 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~-~~l~~a~tGsGKT~~~---~l~~~~--~~~-~~lil~P~~~l~~q~~~~~~~ 75 (374)
..|....||. |+|+|.++++.++.|+ ++++.+|||||||.++ ++++.. ... ++++++|+++|++|..+.+.+
T Consensus 6 ~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~ 84 (844)
T TIGR02621 6 EWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEK 84 (844)
T ss_pred HHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHH
Confidence 4577888998 9999999999999998 5777899999999844 343322 123 445577999999999998876
Q ss_pred cC---------------------------CceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCch----------hh
Q 037567 76 RG---------------------------INAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPI----------SF 118 (374)
Q Consensus 76 ~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~----------~~ 118 (374)
++ +++..+.++....... ......++|+|+|++.+.+-.- ..
T Consensus 85 ~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~-~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~p 163 (844)
T TIGR02621 85 IGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEW-MLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRP 163 (844)
T ss_pred HHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHH-HhcCCCCcEEEECHHHHcCCcccccccccccccc
Confidence 54 2233445554443333 3445678999999876643210 00
Q ss_pred HHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcC---CCCeeEEEeecCcccHHHHHHhcCCCCCeEEEecc
Q 037567 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLL---GVPFVALTATATEKVRIDIINSLKLKNPYVTIASF 195 (374)
Q Consensus 119 ~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (374)
.....+.++.++|+|||| + +.+ +...+..+.......+ +.++++||||++..... ....+...+..+.....
T Consensus 164 i~ag~L~~v~~LVLDEAD-L-d~g--F~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~-l~~~~~~~p~~i~V~~~ 238 (844)
T TIGR02621 164 LHAGFLGQDALIVHDEAH-L-EPA--FQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPD-RTTLLSAEDYKHPVLKK 238 (844)
T ss_pred chhhhhccceEEEEehhh-h-ccc--cHHHHHHHHHhcccCcccccceEEEEecCCCccHHH-HHHHHccCCceeecccc
Confidence 111235778999999999 3 334 3333333333211111 26899999999876543 33333222222222111
Q ss_pred --CCCceeEEEEeecCCcchHHHHHHHHHHh-hcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHH----
Q 037567 196 --DRKNLFYGVKVINRGQSFVDELVQEILKS-VAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKARE---- 268 (374)
Q Consensus 196 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~---- 268 (374)
....+... ............+..+... ...++++||||++++.++.+++.|++.++ ..+||+++..+|.
T Consensus 239 ~l~a~ki~q~--v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~ 314 (844)
T TIGR02621 239 RLAAKKIVKL--VPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVK 314 (844)
T ss_pred cccccceEEE--EecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHH
Confidence 11111111 1111112222223222211 13568899999999999999999998776 8999999999999
Q ss_pred -HHHHhhhc----CC-------eeEEEEeccccccccccCccEEEEECCCCChhHHHHhhccCCCCCCc-eEEEEEeec
Q 037567 269 -EAHRLFIR----DE-------IRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIA-SVCWLYYAR 334 (374)
Q Consensus 269 -~~~~~f~~----g~-------~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~-g~~~~~~~~ 334 (374)
.+++.|.+ |+ ..|||+|+++++|+|++. ++||+...| ...|+||+||+||.|.. +..++++..
T Consensus 315 ~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 315 KEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 77899987 43 689999999999999986 788876655 78999999999999885 333455444
No 55
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-40 Score=277.96 Aligned_cols=327 Identities=21% Similarity=0.277 Sum_probs=260.0
Q ss_pred hHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcccccc-------CCcEEEEcchHHHHHHHHHHHHH
Q 037567 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVT-------GKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 3 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~-------~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
+++.+ -||..|+|+|.+.+|.++++++++-.+-||||||.+|+++++++ +.+++++.|+++|+.|+.+-++.
T Consensus 34 raI~k-kg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkd 112 (529)
T KOG0337|consen 34 RAIHK-KGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKD 112 (529)
T ss_pred HHHHH-hhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHH
Confidence 45555 69999999999999999999999999999999999999998862 56999999999999999999988
Q ss_pred cCCceE----EcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHH
Q 037567 76 RGINAE----FLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQ 151 (374)
Q Consensus 76 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~ 151 (374)
+|-... +..++. ..+.+......++||+++||+++..+... -.+.++.+.+||+||++.+.+.|++ .+
T Consensus 113 lgrgt~lr~s~~~ggD-~~eeqf~~l~~npDii~ATpgr~~h~~ve--m~l~l~sveyVVfdEadrlfemgfq-----eq 184 (529)
T KOG0337|consen 113 LGRGTKLRQSLLVGGD-SIEEQFILLNENPDIIIATPGRLLHLGVE--MTLTLSSVEYVVFDEADRLFEMGFQ-----EQ 184 (529)
T ss_pred hccccchhhhhhcccc-hHHHHHHHhccCCCEEEecCceeeeeehh--eeccccceeeeeehhhhHHHhhhhH-----HH
Confidence 754333 222332 23344455566789999999999877554 3366789999999999999998876 67
Q ss_pred HHHHHHhcC-CCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccC-CCceeEEEEeecCCcchHHHHHHHHHHhhcCCC
Q 037567 152 LDKLRTFLL-GVPFVALTATATEKVRIDIINSLKLKNPYVTIASFD-RKNLFYGVKVINRGQSFVDELVQEILKSVAGAG 229 (374)
Q Consensus 152 ~~~~~~~~~-~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (374)
+.++...++ +.+.++||||.+..... +. ..++.++..+..+.+ .-+-...+.............+..++......+
T Consensus 185 l~e~l~rl~~~~QTllfSatlp~~lv~-fa-kaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~il~~~~~~~ 262 (529)
T KOG0337|consen 185 LHEILSRLPESRQTLLFSATLPRDLVD-FA-KAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSILGGRIKDK 262 (529)
T ss_pred HHHHHHhCCCcceEEEEeccCchhhHH-HH-HccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHHHhcccccc
Confidence 777777766 67999999999987653 33 345555543332211 111111111122223334555555555554567
Q ss_pred cEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCCCh
Q 037567 230 SIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTL 309 (374)
Q Consensus 230 ~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~ 309 (374)
+++||+++...++.+...|...|+.+..++|.+....|...+.+|..++..++|.|+.+.+|+|+|..+.||+++.|.+.
T Consensus 263 ~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~ 342 (529)
T KOG0337|consen 263 QTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDD 342 (529)
T ss_pred ceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhccCCCCCCceEEEEEeeccCCCcc
Q 037567 310 ESYYQESGRCGRDGIASVCWLYYARSNFAKG 340 (374)
Q Consensus 310 ~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~ 340 (374)
.-|+||+||+.|.|..|..|.++.+.+..++
T Consensus 343 klFvhRVgr~aragrtg~aYs~V~~~~~~yl 373 (529)
T KOG0337|consen 343 KLFVHRVGRVARAGRTGRAYSLVASTDDPYL 373 (529)
T ss_pred ceEEEEecchhhccccceEEEEEecccchhh
Confidence 9999999999999999999999998886554
No 56
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=2.1e-39 Score=320.72 Aligned_cols=284 Identities=25% Similarity=0.299 Sum_probs=206.4
Q ss_pred EEccCCCCchhhhhccccc----------------cCCcEEEEcchHHHHHHHHHHHHH----------------cCCce
Q 037567 33 VVMATGSGKSLCYQLPPLV----------------TGKTALVVSPLISLMQDQVMSLKQ----------------RGINA 80 (374)
Q Consensus 33 ~~a~tGsGKT~~~~l~~~~----------------~~~~~lil~P~~~l~~q~~~~~~~----------------~~~~~ 80 (374)
|+||||||||++|.++++. ++.++||++|+++|++|+.+.++. .++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999987653 135799999999999999988753 24555
Q ss_pred EEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhc--ccCcchHHHHHHHHHHHh
Q 037567 81 EFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISE--WGHDFRLEYKQLDKLRTF 158 (374)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~--~~~~~~~~~~~~~~~~~~ 158 (374)
...+++....+. .......++|+|+||+++..++.+. ....++++++|||||+|.+.+ .|..+...+.++..+..
T Consensus 81 ~vrtGDt~~~eR-~rll~~ppdILVTTPEsL~~LLtsk-~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~- 157 (1490)
T PRK09751 81 GIRTGDTPAQER-SKLTRNPPDILITTPESLYLMLTSR-ARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLH- 157 (1490)
T ss_pred EEEECCCCHHHH-HHHhcCCCCEEEecHHHHHHHHhhh-hhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCC-
Confidence 556665544433 2344457899999999998765542 234678999999999999975 35555555555554432
Q ss_pred cCCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCc--eeEEEEeecCC-----------------cchH-HHHH
Q 037567 159 LLGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKN--LFYGVKVINRG-----------------QSFV-DELV 218 (374)
Q Consensus 159 ~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-----------------~~~~-~~~~ 218 (374)
.+.|+|++|||..+. .++..+++...+........... +...+...... .... ..+.
T Consensus 158 -~~~QrIgLSATI~n~--eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~ 234 (1490)
T PRK09751 158 -TSAQRIGLSATVRSA--SDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIE 234 (1490)
T ss_pred -CCCeEEEEEeeCCCH--HHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHH
Confidence 367999999999874 36677777554433322222111 11111111000 0001 1122
Q ss_pred HHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcC---------------------------------CceeeeecCCChH
Q 037567 219 QEILKSVAGAGSIIVYCMTIKDVEEISKALKQLG---------------------------------VKAGTYHGQMGSK 265 (374)
Q Consensus 219 ~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~---------------------------------~~~~~~~~~~~~~ 265 (374)
..++.....++++|||||++..++.++..|++.. ..+..+||+++.+
T Consensus 235 ~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSke 314 (1490)
T PRK09751 235 TGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKE 314 (1490)
T ss_pred HHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHH
Confidence 3344444567899999999999999999987631 1146789999999
Q ss_pred HHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCCChhHHHHhhccCCCC
Q 037567 266 AREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRD 322 (374)
Q Consensus 266 ~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~ 322 (374)
+|..+++.|++|++++||||++++.|||++++++||+++.|.+..+|+||+||+||.
T Consensus 315 eR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 315 QRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999997
No 57
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=3.4e-39 Score=304.91 Aligned_cols=339 Identities=20% Similarity=0.240 Sum_probs=243.7
Q ss_pred hHcCCCCCchhHHHHHHHHHc-CCCEEEEccCCCCchhhhhcccccc----CCcEEEEcchHHHHHHHHHHHH---HcCC
Q 037567 7 KYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVT----GKTALVVSPLISLMQDQVMSLK---QRGI 78 (374)
Q Consensus 7 ~~~~~~~~~~~Q~~~~~~~~~-~~~~l~~a~tGsGKT~~~~l~~~~~----~~~~lil~P~~~l~~q~~~~~~---~~~~ 78 (374)
+-.++.++.+.|..++..... ++|+++++|||||||++++++++.. +.+++++||+++|++|.+++++ .+|+
T Consensus 25 ~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~Gi 104 (766)
T COG1204 25 KGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGI 104 (766)
T ss_pred ccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCC
Confidence 336776778877777776554 5999999999999999988887752 5799999999999999999988 7899
Q ss_pred ceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcc--cCcchHHHHHHHHHH
Q 037567 79 NAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEW--GHDFRLEYKQLDKLR 156 (374)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~--~~~~~~~~~~~~~~~ 156 (374)
++...+++....... ...++|+|+|||++..+.++... ....+++||+||+|.+.+. |..... -+.+.+
T Consensus 105 rV~~~TgD~~~~~~~----l~~~~ViVtT~EK~Dsl~R~~~~--~~~~V~lvViDEiH~l~d~~RG~~lE~---iv~r~~ 175 (766)
T COG1204 105 RVGISTGDYDLDDER----LARYDVIVTTPEKLDSLTRKRPS--WIEEVDLVVIDEIHLLGDRTRGPVLES---IVARMR 175 (766)
T ss_pred EEEEecCCcccchhh----hccCCEEEEchHHhhHhhhcCcc--hhhcccEEEEeeeeecCCcccCceehh---HHHHHH
Confidence 999998876654422 23479999999999887776433 6678999999999999763 433332 233333
Q ss_pred HhcCCCCeeEEEeecCcccHHHHHHhcCCCCCeE-EEeccCCCceeEEEEeecCC-------cchHHHHHHHHHHhhcCC
Q 037567 157 TFLLGVPFVALTATATEKVRIDIINSLKLKNPYV-TIASFDRKNLFYGVKVINRG-------QSFVDELVQEILKSVAGA 228 (374)
Q Consensus 157 ~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 228 (374)
......+++++|||.++.. ++..|++...... ..+................+ ...-...+..+......+
T Consensus 176 ~~~~~~rivgLSATlpN~~--evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~ 253 (766)
T COG1204 176 RLNELIRIVGLSATLPNAE--EVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEG 253 (766)
T ss_pred hhCcceEEEEEeeecCCHH--HHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcC
Confidence 4334579999999999876 5788888765521 11111112222222222111 122355666677778889
Q ss_pred CcEEEEecchhHHHHHHHHHHHc-------------------------------------CCceeeeecCCChHHHHHHH
Q 037567 229 GSIIVYCMTIKDVEEISKALKQL-------------------------------------GVKAGTYHGQMGSKAREEAH 271 (374)
Q Consensus 229 ~~~lVf~~~~~~~~~l~~~l~~~-------------------------------------~~~~~~~~~~~~~~~r~~~~ 271 (374)
+++||||++++.+...++.+... ...+.++|++++.++|+.+.
T Consensus 254 ~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE 333 (766)
T COG1204 254 GQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVE 333 (766)
T ss_pred CeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHH
Confidence 99999999999999999888731 11256899999999999999
Q ss_pred HhhhcCCeeEEEEeccccccccccCccEEE----EEC-----CCCChhHHHHhhccCCCCCC--ceEEEEEe-eccCCCc
Q 037567 272 RLFIRDEIRVMVATMAFGMGIDKPDVRHVI----HYG-----CPKTLESYYQESGRCGRDGI--ASVCWLYY-ARSNFAK 339 (374)
Q Consensus 272 ~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi----~~~-----~p~s~~~~~Q~~GR~~R~~~--~g~~~~~~-~~~~~~~ 339 (374)
..|+.|.++||+||+.+..|+|+|.-.+|| .++ -+.+..++.|++|||||.|- .|..+++. +..+...
T Consensus 334 ~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~ 413 (766)
T COG1204 334 DAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEY 413 (766)
T ss_pred HHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhH
Confidence 999999999999999999999999877766 344 34478999999999999874 34444444 4444444
Q ss_pred ccceeccccchHHHHHH
Q 037567 340 GDFYCGESQTENQRTAI 356 (374)
Q Consensus 340 ~~~~~~~~~~~~~~~~~ 356 (374)
....+....++.....+
T Consensus 414 ~~~~~~~~~~e~~~s~l 430 (766)
T COG1204 414 LAELYIQSEPEPIESKL 430 (766)
T ss_pred HHHHhhccCcchHHHhh
Confidence 44444444443333333
No 58
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=2e-38 Score=276.32 Aligned_cols=318 Identities=23% Similarity=0.299 Sum_probs=239.6
Q ss_pred HcCCCCCchhHHHHHHH-HHcCCCEEEEccCCCCchhhhhccccc----cCCcEEEEcchHHHHHHHHHHHHH----cCC
Q 037567 8 YFGYSVFRPYQKDVIQR-IIEKRDCLVVMATGSGKSLCYQLPPLV----TGKTALVVSPLISLMQDQVMSLKQ----RGI 78 (374)
Q Consensus 8 ~~~~~~~~~~Q~~~~~~-~~~~~~~l~~a~tGsGKT~~~~l~~~~----~~~~~lil~P~~~l~~q~~~~~~~----~~~ 78 (374)
..|+.++.|.|.-++.+ +++|.|.+++++|+||||++..++-+. .+++.|+++|..+|++|.+++|+. .|+
T Consensus 211 ~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~dF~~rYs~Lgl 290 (830)
T COG1202 211 REGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYEDFKERYSKLGL 290 (830)
T ss_pred hcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcchHHHHHHHhhcccc
Confidence 37999999999999975 678999999999999999988777554 489999999999999999999874 455
Q ss_pred ceEEcCCCCCchhh---hhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHH
Q 037567 79 NAEFLGSAQTDSSV---QTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKL 155 (374)
Q Consensus 79 ~~~~~~~~~~~~~~---~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~ 155 (374)
.+.+-.+-...... .........||+|+|++-+..+++. . ..+.++..|||||+|.+.+.....+.. ..+.++
T Consensus 291 kvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRt--g-~~lgdiGtVVIDEiHtL~deERG~RLd-GLI~RL 366 (830)
T COG1202 291 KVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRT--G-KDLGDIGTVVIDEIHTLEDEERGPRLD-GLIGRL 366 (830)
T ss_pred eEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHc--C-CcccccceEEeeeeeeccchhcccchh-hHHHHH
Confidence 55443332111111 1122234569999999987666554 2 456788999999999997644433333 678888
Q ss_pred HHhcCCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEEEeecCCcchHHHHHHHHHHhh-------cCC
Q 037567 156 RTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSV-------AGA 228 (374)
Q Consensus 156 ~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 228 (374)
+...+..|+|++|||..++. .+...++........... .+. ..-.+..+.....+++..+.+.. ...
T Consensus 367 r~l~~~AQ~i~LSATVgNp~--elA~~l~a~lV~y~~RPV---plE-rHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~r 440 (830)
T COG1202 367 RYLFPGAQFIYLSATVGNPE--ELAKKLGAKLVLYDERPV---PLE-RHLVFARNESEKWDIIARLVKREFSTESSKGYR 440 (830)
T ss_pred HHhCCCCeEEEEEeecCChH--HHHHHhCCeeEeecCCCC---Chh-HeeeeecCchHHHHHHHHHHHHHHhhhhccCcC
Confidence 88888999999999998875 456666644321111111 111 11223333444555665555432 234
Q ss_pred CcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEE---EECC
Q 037567 229 GSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI---HYGC 305 (374)
Q Consensus 229 ~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi---~~~~ 305 (374)
+++|||++|+..|..++..|..+|+++.++|++++..+|..+...|.++++.++|+|.+++.|+|+|...+|+ -.+.
T Consensus 441 GQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~ 520 (830)
T COG1202 441 GQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGI 520 (830)
T ss_pred CceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHccc
Confidence 7899999999999999999999999999999999999999999999999999999999999999999765544 1233
Q ss_pred CC-ChhHHHHhhccCCCCC--CceEEEEEeecc
Q 037567 306 PK-TLESYYQESGRCGRDG--IASVCWLYYARS 335 (374)
Q Consensus 306 p~-s~~~~~Q~~GR~~R~~--~~g~~~~~~~~~ 335 (374)
.| |+.+|.||.|||||.+ ..|.+|+++++.
T Consensus 521 ~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 521 EWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred ccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 33 7999999999999974 689999998886
No 59
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=1.3e-37 Score=278.69 Aligned_cols=300 Identities=17% Similarity=0.141 Sum_probs=196.2
Q ss_pred CEEEEccCCCCchhhhhccccc-----cCCcEEEEcchHHHHHHHHHHHHHc-CCceEEcCCCCCch------------h
Q 037567 30 DCLVVMATGSGKSLCYQLPPLV-----TGKTALVVSPLISLMQDQVMSLKQR-GINAEFLGSAQTDS------------S 91 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~l~~~~-----~~~~~lil~P~~~l~~q~~~~~~~~-~~~~~~~~~~~~~~------------~ 91 (374)
++++.||||||||.+++++++. ...++++++|+++|+.|+.+.+... +......++..... .
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 4789999999999998888773 4678999999999999999999875 65444333321100 0
Q ss_pred hhhhh-----hcCCeeEEEEcCcccccCchh----hHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCC
Q 037567 92 VQTKA-----ETGYFQLLFMTPEKACIIPIS----FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGV 162 (374)
Q Consensus 92 ~~~~~-----~~~~~~i~i~T~~~l~~~~~~----~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (374)
..... .....+|+++||+++...... ..........+++|+||+|.+.+.+... ....+..+. ..+.
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~--l~~~l~~l~--~~~~ 156 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL--ILAVLEVLK--DNDV 156 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH--HHHHHHHHH--HcCC
Confidence 00000 012357999999987654333 1111122234789999999997644322 112222222 2368
Q ss_pred CeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCC-ceeEEEEeecCCcchHHHHHHHHHHhhcCCCcEEEEecchhHH
Q 037567 163 PFVALTATATEKVRIDIINSLKLKNPYVTIASFDRK-NLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241 (374)
Q Consensus 163 ~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~ 241 (374)
++++||||++.... .+................... .....+.............+..+++....++++||||++++.+
T Consensus 157 ~~i~~SATlp~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~ 235 (358)
T TIGR01587 157 PILLMSATLPKFLK-EYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRA 235 (358)
T ss_pred CEEEEecCchHHHH-HHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHH
Confidence 89999999985432 333322221111000000000 0011111111111122334455555555788999999999999
Q ss_pred HHHHHHHHHcCC--ceeeeecCCChHHHHH----HHHhhhcCCeeEEEEeccccccccccCccEEEEECCCCChhHHHHh
Q 037567 242 EEISKALKQLGV--KAGTYHGQMGSKAREE----AHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQE 315 (374)
Q Consensus 242 ~~l~~~l~~~~~--~~~~~~~~~~~~~r~~----~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~ 315 (374)
+.+++.|++.+. .+..+||+++..+|.. +++.|.+|+..+||||+++++|+|++ ++.+|.+..| +..|+||
T Consensus 236 ~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr 312 (358)
T TIGR01587 236 QEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQR 312 (358)
T ss_pred HHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHH
Confidence 999999988766 4899999999999876 48899999999999999999999996 7888877665 7899999
Q ss_pred hccCCCCCCc----eEEEEEeeccCC
Q 037567 316 SGRCGRDGIA----SVCWLYYARSNF 337 (374)
Q Consensus 316 ~GR~~R~~~~----g~~~~~~~~~~~ 337 (374)
+||+||.|+. |.++++....+.
T Consensus 313 ~GR~gR~g~~~~~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 313 LGRLHRYGRKNGENFEVYIITIAPEG 338 (358)
T ss_pred hccccCCCCCCCCCCeEEEEeecCCC
Confidence 9999998753 367777666553
No 60
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.5e-37 Score=288.75 Aligned_cols=302 Identities=17% Similarity=0.159 Sum_probs=207.4
Q ss_pred CCchhHHHHHHHHHcC---CCEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHHcC-C---ceEEcCC
Q 037567 13 VFRPYQKDVIQRIIEK---RDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRG-I---NAEFLGS 85 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~---~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~-~---~~~~~~~ 85 (374)
++||||.+++..++.+ +..++++|||+|||++.+..+.....++||+||+..|++||.+++.++. + .+..+.+
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg 334 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTVKKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTS 334 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHhCCCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEec
Confidence 6999999999998853 4789999999999998877666667889999999999999999999873 2 2222222
Q ss_pred CCCchhhhhhhhcCCeeEEEEcCcccccCchh------hHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhc
Q 037567 86 AQTDSSVQTKAETGYFQLLFMTPEKACIIPIS------FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFL 159 (374)
Q Consensus 86 ~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~------~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~ 159 (374)
.... .......|+|+|++++.....+ ....+....++++|+||||++.. .....+...+
T Consensus 335 ~~k~------~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA---------~~fr~il~~l 399 (732)
T TIGR00603 335 DAKE------RFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA---------AMFRRVLTIV 399 (732)
T ss_pred Cccc------ccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH---------HHHHHHHHhc
Confidence 2111 1112358999999987543221 11223335789999999999854 2334444445
Q ss_pred CCCCeeEEEeecCcccHHH-HHHhcCCCCCeEEEecc---C-C---CceeEEEEeecC---------------------C
Q 037567 160 LGVPFVALTATATEKVRID-IINSLKLKNPYVTIASF---D-R---KNLFYGVKVINR---------------------G 210 (374)
Q Consensus 160 ~~~~~i~~SaT~~~~~~~~-~~~~~~~~~~~~~~~~~---~-~---~~~~~~~~~~~~---------------------~ 210 (374)
....+++|||||...+... .+..+ -.+.+...+. . . ..........+. .
T Consensus 400 ~a~~RLGLTATP~ReD~~~~~L~~L--iGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~ 477 (732)
T TIGR00603 400 QAHCKLGLTATLVREDDKITDLNFL--IGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVM 477 (732)
T ss_pred CcCcEEEEeecCcccCCchhhhhhh--cCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhh
Confidence 5678999999998765421 11111 1122211110 0 0 000000000000 0
Q ss_pred cchHHHHHHHHHHhh-cCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcC-CeeEEEEeccc
Q 037567 211 QSFVDELVQEILKSV-AGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRD-EIRVMVATMAF 288 (374)
Q Consensus 211 ~~~~~~~~~~~~~~~-~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~ilv~t~~~ 288 (374)
...+...+..+++.. ..+.++||||.+...++.+++.|. +..+||+++..+|..+++.|+.| .+++||+|.++
T Consensus 478 np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVg 552 (732)
T TIGR00603 478 NPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVG 552 (732)
T ss_pred ChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEEeccc
Confidence 111223333344332 367899999999999999988872 45689999999999999999875 78999999999
Q ss_pred cccccccCccEEEEECCCC-ChhHHHHhhccCCCCCCceEE-------EEEeeccC
Q 037567 289 GMGIDKPDVRHVIHYGCPK-TLESYYQESGRCGRDGIASVC-------WLYYARSN 336 (374)
Q Consensus 289 ~~G~d~~~~~~vi~~~~p~-s~~~~~Q~~GR~~R~~~~g~~-------~~~~~~~~ 336 (374)
.+|+|+|+++++|++++|. |..+|+||+||++|.+.+|.+ |.+++++.
T Consensus 553 deGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT 608 (732)
T TIGR00603 553 DTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDT 608 (732)
T ss_pred ccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCc
Confidence 9999999999999999874 999999999999999876654 66666554
No 61
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.5e-36 Score=283.30 Aligned_cols=300 Identities=16% Similarity=0.158 Sum_probs=203.2
Q ss_pred hHHHHHHHHHcCCCEEEEccCCCCchhh---------hhccccc---------cCCcEEEEcchHHHHHHHHHHHHHc--
Q 037567 17 YQKDVIQRIIEKRDCLVVMATGSGKSLC---------YQLPPLV---------TGKTALVVSPLISLMQDQVMSLKQR-- 76 (374)
Q Consensus 17 ~Q~~~~~~~~~~~~~l~~a~tGsGKT~~---------~~l~~~~---------~~~~~lil~P~~~l~~q~~~~~~~~-- 76 (374)
.|.++++.+.+++++++.|+||||||.. |+++.+. ...++++++||++|+.|+...+.+.
T Consensus 168 iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~vg 247 (675)
T PHA02653 168 VQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSLG 247 (675)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHhC
Confidence 7899999999999999999999999976 3322221 2458999999999999998888652
Q ss_pred -----CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHH
Q 037567 77 -----GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQ 151 (374)
Q Consensus 77 -----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~ 151 (374)
+..+.+..++..... ........+++++|+.... ..+.++++||+||||.....+.. ....
T Consensus 248 ~~~~~g~~v~v~~Gg~~~~~--~~t~~k~~~Ilv~T~~L~l---------~~L~~v~~VVIDEaHEr~~~~Dl---lL~l 313 (675)
T PHA02653 248 FDEIDGSPISLKYGSIPDEL--INTNPKPYGLVFSTHKLTL---------NKLFDYGTVIIDEVHEHDQIGDI---IIAV 313 (675)
T ss_pred ccccCCceEEEEECCcchHH--hhcccCCCCEEEEeCcccc---------cccccCCEEEccccccCccchhH---HHHH
Confidence 233344444443211 1112224689999976311 13567899999999998664421 1111
Q ss_pred HHHHHHhcCCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEEEeec-C---C----cchHHHHHHHHHH
Q 037567 152 LDKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVIN-R---G----QSFVDELVQEILK 223 (374)
Q Consensus 152 ~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~----~~~~~~~~~~~~~ 223 (374)
+..... ...++++||||++.... .+...++ ....+.........+........ . . ......++..+.+
T Consensus 314 lk~~~~--~~rq~ILmSATl~~dv~-~l~~~~~-~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~ 389 (675)
T PHA02653 314 ARKHID--KIRSLFLMTATLEDDRD-RIKEFFP-NPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKK 389 (675)
T ss_pred HHHhhh--hcCEEEEEccCCcHhHH-HHHHHhc-CCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHH
Confidence 211111 12479999999986643 3444333 33333332211111111110000 0 0 0111222333322
Q ss_pred hh-cCCCcEEEEecchhHHHHHHHHHHHc--CCceeeeecCCChHHHHHHHHhh-hcCCeeEEEEeccccccccccCccE
Q 037567 224 SV-AGAGSIIVYCMTIKDVEEISKALKQL--GVKAGTYHGQMGSKAREEAHRLF-IRDEIRVMVATMAFGMGIDKPDVRH 299 (374)
Q Consensus 224 ~~-~~~~~~lVf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f-~~g~~~ilv~t~~~~~G~d~~~~~~ 299 (374)
.. ..++++|||++++.+++.+++.|.+. ++.+..+||+++.. ++.++.| .+|+.+|||||+.+++|+|+|++++
T Consensus 390 ~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~ 467 (675)
T PHA02653 390 YTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATH 467 (675)
T ss_pred hhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeE
Confidence 22 24578999999999999999999987 68899999999864 4666777 6899999999999999999999999
Q ss_pred EEEEC---CCC---------ChhHHHHhhccCCCCCCceEEEEEeeccCC
Q 037567 300 VIHYG---CPK---------TLESYYQESGRCGRDGIASVCWLYYARSNF 337 (374)
Q Consensus 300 vi~~~---~p~---------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 337 (374)
||+++ .|. |..++.||.||+||. ++|.|+.++++++.
T Consensus 468 VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 468 VYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred EEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 99998 454 788999999999999 79999999999874
No 62
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.2e-36 Score=262.65 Aligned_cols=316 Identities=21% Similarity=0.232 Sum_probs=221.8
Q ss_pred CCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc----cCCcEEEEcchHHHHHHHHHHHHHc-CCc---eE
Q 037567 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV----TGKTALVVSPLISLMQDQVMSLKQR-GIN---AE 81 (374)
Q Consensus 10 ~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~----~~~~~lil~P~~~l~~q~~~~~~~~-~~~---~~ 81 (374)
+.-++|.||.......+.+ +.+++.|||.|||+++++.+.. .++++|+++||+-|+.|..+.+.+. |++ +.
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~ 90 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIA 90 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhhee
Confidence 3447899999999887766 8899999999999887766652 3448999999999999999999875 442 33
Q ss_pred EcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHH-HHHHHhcC
Q 037567 82 FLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQL-DKLRTFLL 160 (374)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~-~~~~~~~~ 160 (374)
.+++...... .......-.|+|+||+.+.+-+.. +.+....+.++|+||||+-.. ... +-.+ .+....-.
T Consensus 91 ~ltGev~p~~--R~~~w~~~kVfvaTPQvveNDl~~--Grid~~dv~~lifDEAHRAvG--nyA---Yv~Va~~y~~~~k 161 (542)
T COG1111 91 ALTGEVRPEE--REELWAKKKVFVATPQVVENDLKA--GRIDLDDVSLLIFDEAHRAVG--NYA---YVFVAKEYLRSAK 161 (542)
T ss_pred eecCCCChHH--HHHHHhhCCEEEeccHHHHhHHhc--CccChHHceEEEechhhhccC--cch---HHHHHHHHHHhcc
Confidence 4555443332 222333458999999988665444 566777889999999998643 211 1222 22334444
Q ss_pred CCCeeEEEeecCcccH--HHHHHhcCCCCCeEEEeccC-CCc--------------------------------------
Q 037567 161 GVPFVALTATATEKVR--IDIINSLKLKNPYVTIASFD-RKN-------------------------------------- 199 (374)
Q Consensus 161 ~~~~i~~SaT~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~-------------------------------------- 199 (374)
+..+++|||||-.+.. .++...+++....+...... ...
T Consensus 162 ~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~ 241 (542)
T COG1111 162 NPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKE 241 (542)
T ss_pred CceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6679999999987643 34566666543222111000 000
Q ss_pred --eeEEEE------------------e-----------------------------------------------------
Q 037567 200 --LFYGVK------------------V----------------------------------------------------- 206 (374)
Q Consensus 200 --~~~~~~------------------~----------------------------------------------------- 206 (374)
+..... .
T Consensus 242 ~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a 321 (542)
T COG1111 242 LGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAA 321 (542)
T ss_pred cCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHH
Confidence 000000 0
Q ss_pred ------------------------ecCCcchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCcee-eee--
Q 037567 207 ------------------------INRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAG-TYH-- 259 (374)
Q Consensus 207 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~-~~~-- 259 (374)
-+.+...+.+++.+.+++ ..+.++|||++.+++++.+.+.|.+.+..+. .+-
T Consensus 322 ~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k-~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQ 400 (542)
T COG1111 322 KSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEK-NGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQ 400 (542)
T ss_pred HHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhc-CCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeec
Confidence 000001111222222222 2446899999999999999999999888774 222
Q ss_pred ------cCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCCChhHHHHhhccCCCCCCceEEEEEee
Q 037567 260 ------GQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYA 333 (374)
Q Consensus 260 ------~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~ 333 (374)
.||+.++..+++++|+.|+++|||||++.++|+|+|.++.||+|++..|...++||.||+||. ..|.+++++.
T Consensus 401 a~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt 479 (542)
T COG1111 401 ASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVT 479 (542)
T ss_pred cccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEe
Confidence 469999999999999999999999999999999999999999999999999999999999997 6888888888
Q ss_pred ccCC
Q 037567 334 RSNF 337 (374)
Q Consensus 334 ~~~~ 337 (374)
..+.
T Consensus 480 ~gtr 483 (542)
T COG1111 480 EGTR 483 (542)
T ss_pred cCch
Confidence 8743
No 63
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=1.6e-36 Score=268.34 Aligned_cols=295 Identities=19% Similarity=0.217 Sum_probs=194.0
Q ss_pred hHHHHHHHHHcCCC--EEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHHcC--------CceEEcCCC
Q 037567 17 YQKDVIQRIIEKRD--CLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRG--------INAEFLGSA 86 (374)
Q Consensus 17 ~Q~~~~~~~~~~~~--~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~--------~~~~~~~~~ 86 (374)
+|.++++++.++++ +++.+|||||||.+++++++....++++++|+++|++|+.+.+..+- ..+..+.+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~ 80 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHGENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKA 80 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCC
Confidence 69999999999874 68899999999999999988888889999999999999988877651 222222222
Q ss_pred CCch-hh------------------hhhhhcCCeeEEEEcCcccccCchhhHH------HHHhcCccEEEEeccchhhcc
Q 037567 87 QTDS-SV------------------QTKAETGYFQLLFMTPEKACIIPISFWS------KLLKAGVCLFAVDEAHCISEW 141 (374)
Q Consensus 87 ~~~~-~~------------------~~~~~~~~~~i~i~T~~~l~~~~~~~~~------~~~~~~~~~vviDE~h~~~~~ 141 (374)
.... .. ........+.|+++||+.+..++..+.. .....+++++|+||+|.+..+
T Consensus 81 ~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~ 160 (357)
T TIGR03158 81 TLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAK 160 (357)
T ss_pred chHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCcc
Confidence 1110 00 0111134688999999988765433211 123578999999999998764
Q ss_pred cCcchHHH-HHHHHHHHhcCCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEecc------------CC---------Cc
Q 037567 142 GHDFRLEY-KQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTIASF------------DR---------KN 199 (374)
Q Consensus 142 ~~~~~~~~-~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~------------~~---------~~ 199 (374)
+....... ..+..+.......+++++|||+++.....+........+....... .. +.
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (357)
T TIGR03158 161 QLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPP 240 (357)
T ss_pred cchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccc
Confidence 43322211 2222222222357999999999887655444432222222221111 00 11
Q ss_pred eeEEEEeec-CCcchHHHHHHHHHHhh--cCCCcEEEEecchhHHHHHHHHHHHcC--CceeeeecCCChHHHHHHHHhh
Q 037567 200 LFYGVKVIN-RGQSFVDELVQEILKSV--AGAGSIIVYCMTIKDVEEISKALKQLG--VKAGTYHGQMGSKAREEAHRLF 274 (374)
Q Consensus 200 ~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~lVf~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~r~~~~~~f 274 (374)
+...+.... ........++..+.+.. .+++++||||+++..++.+++.|++.+ ..+..+||.++..+|.+.
T Consensus 241 i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~---- 316 (357)
T TIGR03158 241 VELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA---- 316 (357)
T ss_pred eEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh----
Confidence 222121101 11111222223333322 256799999999999999999999864 567889999999888754
Q ss_pred hcCCeeEEEEeccccccccccCccEEEEECCCCChhHHHHhhccCC
Q 037567 275 IRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCG 320 (374)
Q Consensus 275 ~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~ 320 (374)
++.+|||||+++++|+|+|.. .|| ++ |.+...|+||+||+|
T Consensus 317 --~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 317 --MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred --ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 367899999999999999976 555 44 889999999999986
No 64
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=9.2e-37 Score=292.04 Aligned_cols=327 Identities=17% Similarity=0.192 Sum_probs=225.4
Q ss_pred chhHHHHHHHHHcCCCEEEEccCCCCchhhhhcccccc---CCcEEEEcchHHHHHHHHHHHHH-cCCc----eEEcCCC
Q 037567 15 RPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVT---GKTALVVSPLISLMQDQVMSLKQ-RGIN----AEFLGSA 86 (374)
Q Consensus 15 ~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~---~~~~lil~P~~~l~~q~~~~~~~-~~~~----~~~~~~~ 86 (374)
+.+-.+.+.++.+++++++.|+||||||..+.++++.. ..+++++.|++.++.|+.+.+.. ++.. +......
T Consensus 7 ~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~ 86 (812)
T PRK11664 7 AAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRA 86 (812)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecC
Confidence 34445677777788999999999999999988777753 45899999999999999998853 3332 2222211
Q ss_pred CCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHh-cCCCCee
Q 037567 87 QTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTF-LLGVPFV 165 (374)
Q Consensus 87 ~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i 165 (374)
.. .......|+|+||+.+.+.+.. ...+.++++||+||+|... .+....+..+..+... .++.+++
T Consensus 87 ~~-------~~~~~t~I~v~T~G~Llr~l~~---d~~L~~v~~IIlDEaHER~---l~~Dl~L~ll~~i~~~lr~~lqli 153 (812)
T PRK11664 87 ES-------KVGPNTRLEVVTEGILTRMIQR---DPELSGVGLVILDEFHERS---LQADLALALLLDVQQGLRDDLKLL 153 (812)
T ss_pred cc-------ccCCCCcEEEEChhHHHHHHhh---CCCcCcCcEEEEcCCCccc---cccchHHHHHHHHHHhCCccceEE
Confidence 11 1122347999999998765443 3457889999999999631 1111111222333332 3478899
Q ss_pred EEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEEEeecCCcchHH----HHHHHHHHhhcCCCcEEEEecchhHH
Q 037567 166 ALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVD----ELVQEILKSVAGAGSIIVYCMTIKDV 241 (374)
Q Consensus 166 ~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~lVf~~~~~~~ 241 (374)
+||||++... +...+. ..+.+...... ..+...+.... ...... ..+..++.. ..+++|||+++..++
T Consensus 154 lmSATl~~~~---l~~~~~-~~~~I~~~gr~-~pV~~~y~~~~-~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~~ei 225 (812)
T PRK11664 154 IMSATLDNDR---LQQLLP-DAPVIVSEGRS-FPVERRYQPLP-AHQRFDEAVARATAELLRQ--ESGSLLLFLPGVGEI 225 (812)
T ss_pred EEecCCCHHH---HHHhcC-CCCEEEecCcc-ccceEEeccCc-hhhhHHHHHHHHHHHHHHh--CCCCEEEEcCCHHHH
Confidence 9999998653 233332 22333222111 11111111111 111222 223333332 468999999999999
Q ss_pred HHHHHHHHH---cCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCC-----------
Q 037567 242 EEISKALKQ---LGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPK----------- 307 (374)
Q Consensus 242 ~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~----------- 307 (374)
+.+++.|++ .++.+..+||+++.+++...+..|.+|+.+|+|||+++++|+|+|++++||+++.+.
T Consensus 226 ~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~ 305 (812)
T PRK11664 226 QRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLT 305 (812)
T ss_pred HHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcc
Confidence 999999987 467889999999999999999999999999999999999999999999999988764
Q ss_pred -------ChhHHHHhhccCCCCCCceEEEEEeeccCCCcccceeccccchHHHHHHHHHHHHHHHH
Q 037567 308 -------TLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLLAAQRY 366 (374)
Q Consensus 308 -------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 366 (374)
|..++.||.||+||. .+|.||.+|++.++.. +.....++..+..+..-..++..+
T Consensus 306 ~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~~---l~~~~~PEI~r~dL~~~~L~l~~~ 367 (812)
T PRK11664 306 RLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAER---AAAQSEPEILHSDLSGLLLELLQW 367 (812)
T ss_pred eeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHhh---CccCCCCceeccchHHHHHHHHHc
Confidence 346899999999998 6999999999987754 344455555555555555555444
No 65
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=3.3e-36 Score=288.64 Aligned_cols=328 Identities=23% Similarity=0.251 Sum_probs=245.0
Q ss_pred hHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc-----cCCcEEEEcchHHHHHHHHHHHHHc-
Q 037567 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV-----TGKTALVVSPLISLMQDQVMSLKQR- 76 (374)
Q Consensus 3 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~-----~~~~~lil~P~~~l~~q~~~~~~~~- 76 (374)
.+|.. .|+..|++||.+|+..+.+|++++|..|||||||.+|++|++. ...++|++.|+++|+++..+.+.++
T Consensus 61 ~~l~~-~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~ 139 (851)
T COG1205 61 SALVK-AGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELI 139 (851)
T ss_pred HHHHH-hccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHH
Confidence 45666 6777899999999999999999999999999999999999886 3567899999999999999998865
Q ss_pred ---C--CceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchh--hHHHHHhcCccEEEEeccchhhc-ccCcchHH
Q 037567 77 ---G--INAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPIS--FWSKLLKAGVCLFAVDEAHCISE-WGHDFRLE 148 (374)
Q Consensus 77 ---~--~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~--~~~~~~~~~~~~vviDE~h~~~~-~~~~~~~~ 148 (374)
+ +....+.+...... .......+++|++|||++|..++-. ......+.++++||+||+|.+.. .|.+....
T Consensus 140 ~~~~~~v~~~~y~Gdt~~~~-r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~l 218 (851)
T COG1205 140 SDLPGKVTFGRYTGDTPPEE-RRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALL 218 (851)
T ss_pred HhCCCcceeeeecCCCChHH-HHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHH
Confidence 3 33444444433333 3355667899999999999773322 22344567799999999999954 78888878
Q ss_pred HHHHHHHHHhcC-CCCeeEEEeecCcccHHHHHHhcCCCCCeE-EEeccCCCceeEEEEeec------C--CcchHHHHH
Q 037567 149 YKQLDKLRTFLL-GVPFVALTATATEKVRIDIINSLKLKNPYV-TIASFDRKNLFYGVKVIN------R--GQSFVDELV 218 (374)
Q Consensus 149 ~~~~~~~~~~~~-~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~ 218 (374)
++++........ +.++|+.|||...+.. +...+....... +..+.........+.... . ........-
T Consensus 219 lRRL~~~~~~~~~~~q~i~~SAT~~np~e--~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~ 296 (851)
T COG1205 219 LRRLLRRLRRYGSPLQIICTSATLANPGE--FAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAELA 296 (851)
T ss_pred HHHHHHHHhccCCCceEEEEeccccChHH--HHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHH
Confidence 788877776554 6789999999988763 344444333333 222222222221111111 0 111112222
Q ss_pred HHHHHhhcCCCcEEEEecchhHHHHHH----HHHHHcC----CceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccc
Q 037567 219 QEILKSVAGAGSIIVYCMTIKDVEEIS----KALKQLG----VKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGM 290 (374)
Q Consensus 219 ~~~~~~~~~~~~~lVf~~~~~~~~~l~----~~l~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~ 290 (374)
.-+-....++-++|+|+.+...++.+. +.+...+ ..+..+++++...+|..+...|+.|+..++++|++++-
T Consensus 297 ~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~Alel 376 (851)
T COG1205 297 TLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALEL 376 (851)
T ss_pred HHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhh
Confidence 222223347889999999999999997 4444445 45778899999999999999999999999999999999
Q ss_pred cccccCccEEEEECCCC-ChhHHHHhhccCCCCCCceEEEEEeec
Q 037567 291 GIDKPDVRHVIHYGCPK-TLESYYQESGRCGRDGIASVCWLYYAR 334 (374)
Q Consensus 291 G~d~~~~~~vi~~~~p~-s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 334 (374)
|+|+.+++.+|..+.|. +..+++|+.||+||.++.+..++.+..
T Consensus 377 gidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~ 421 (851)
T COG1205 377 GIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRS 421 (851)
T ss_pred ceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCC
Confidence 99999999999999999 899999999999999987777777663
No 66
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2e-36 Score=289.07 Aligned_cols=328 Identities=16% Similarity=0.174 Sum_probs=224.5
Q ss_pred hhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc---cCCcEEEEcchHHHHHHHHHHHH-HcCCceEEcCCCCCchh
Q 037567 16 PYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV---TGKTALVVSPLISLMQDQVMSLK-QRGINAEFLGSAQTDSS 91 (374)
Q Consensus 16 ~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~---~~~~~lil~P~~~l~~q~~~~~~-~~~~~~~~~~~~~~~~~ 91 (374)
.+-.+++..+.++.++++.|+||||||..+.++++. .+.+++++.|++.++.|.++.+. .++.......+.....
T Consensus 5 ~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~- 83 (819)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRG- 83 (819)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcc-
Confidence 344567777778899999999999999998877764 35689999999999999999885 3433221111110000
Q ss_pred hhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccch-hhcccCcchHHHHHHHHHHH-hcCCCCeeEEEe
Q 037567 92 VQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHC-ISEWGHDFRLEYKQLDKLRT-FLLGVPFVALTA 169 (374)
Q Consensus 92 ~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~Sa 169 (374)
........+|.|+|++.|...+.. ...+.++++|||||+|. ..+.... ...+..+.. ..++.++++|||
T Consensus 84 --~~~~s~~t~I~v~T~G~Llr~l~~---d~~L~~v~~VIiDEaHER~L~~Dl~----L~ll~~i~~~lr~dlqlIlmSA 154 (819)
T TIGR01970 84 --ENKVSRRTRLEVVTEGILTRMIQD---DPELDGVGALIFDEFHERSLDADLG----LALALDVQSSLREDLKILAMSA 154 (819)
T ss_pred --ccccCCCCcEEEECCcHHHHHHhh---CcccccCCEEEEeccchhhhccchH----HHHHHHHHHhcCCCceEEEEeC
Confidence 011223468999999988765443 34578899999999995 4432211 122223333 234789999999
Q ss_pred ecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEEEeecC-CcchH----HHHHHHHHHhhcCCCcEEEEecchhHHHHH
Q 037567 170 TATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINR-GQSFV----DELVQEILKSVAGAGSIIVYCMTIKDVEEI 244 (374)
Q Consensus 170 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l 244 (374)
|++.... ...++ ..+.+...... ......+... ..... ...+..+++. ..+++|||+++..+++.+
T Consensus 155 Tl~~~~l---~~~l~-~~~vI~~~gr~---~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~~eI~~l 225 (819)
T TIGR01970 155 TLDGERL---SSLLP-DAPVVESEGRS---FPVEIRYLPLRGDQRLEDAVSRAVEHALAS--ETGSILVFLPGQAEIRRV 225 (819)
T ss_pred CCCHHHH---HHHcC-CCcEEEecCcc---eeeeeEEeecchhhhHHHHHHHHHHHHHHh--cCCcEEEEECCHHHHHHH
Confidence 9987542 33332 22333222111 1111111111 11112 1223333332 468899999999999999
Q ss_pred HHHHHH---cCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCC--------------
Q 037567 245 SKALKQ---LGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPK-------------- 307 (374)
Q Consensus 245 ~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~-------------- 307 (374)
++.|++ .++.+..+||+++.++|..+++.|.+|+.+|||||+++++|+|+|++++||+++.+.
T Consensus 226 ~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~ 305 (819)
T TIGR01970 226 QEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLE 305 (819)
T ss_pred HHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceee
Confidence 999987 378899999999999999999999999999999999999999999999999999875
Q ss_pred ----ChhHHHHhhccCCCCCCceEEEEEeeccCCCcccceeccccchHHHHHHHHHHHHHHHH
Q 037567 308 ----TLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLLAAQRY 366 (374)
Q Consensus 308 ----s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 366 (374)
|..++.||.||+||. .+|.||.+|+++++..+.. ...++..+..+..-..++..+
T Consensus 306 ~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~l~~---~~~PEI~r~~L~~~~L~l~~~ 364 (819)
T TIGR01970 306 TVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQRLPA---QDEPEILQADLSGLALELAQW 364 (819)
T ss_pred EEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHhhhc---CCCcceeccCcHHHHHHHHHc
Confidence 345689999999998 7999999999987755433 335555554554445555444
No 67
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.6e-36 Score=279.10 Aligned_cols=342 Identities=17% Similarity=0.217 Sum_probs=253.8
Q ss_pred hHcCCCCCchhHHHHHHHHHc-CCCEEEEccCCCCchhhhhccccc-------------cCCcEEEEcchHHHHHHHHHH
Q 037567 7 KYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLV-------------TGKTALVVSPLISLMQDQVMS 72 (374)
Q Consensus 7 ~~~~~~~~~~~Q~~~~~~~~~-~~~~l~~a~tGsGKT~~~~l~~~~-------------~~~~~lil~P~~~l~~q~~~~ 72 (374)
..|+|..+..+|+.++|..+. +.|.+++||||||||..++|.+++ ...++++++|+++||.++.+.
T Consensus 104 ~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 104 GFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred hcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHH
Confidence 678999999999999999887 579999999999999999888875 267899999999999998877
Q ss_pred HHH----cCCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHH-HHHhcCccEEEEeccchhhc-ccCcch
Q 037567 73 LKQ----RGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS-KLLKAGVCLFAVDEAHCISE-WGHDFR 146 (374)
Q Consensus 73 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~-~~~~~~~~~vviDE~h~~~~-~~~~~~ 146 (374)
+.+ +|+.+..++++....... -..++|+|+|||++.-..++... ...++.+.+||+||+|.+-+ .|...+
T Consensus 184 ~~kkl~~~gi~v~ELTGD~ql~~te----i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlE 259 (1230)
T KOG0952|consen 184 FSKKLAPLGISVRELTGDTQLTKTE----IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLE 259 (1230)
T ss_pred HhhhcccccceEEEecCcchhhHHH----HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHH
Confidence 764 477777777765443332 23479999999999666555433 33456789999999999954 676666
Q ss_pred HHHHHHHHHHHhc-CCCCeeEEEeecCcccHHHHHHhcCCCCCe-EEEeccCCCceeEEEEee--cCC------cchHHH
Q 037567 147 LEYKQLDKLRTFL-LGVPFVALTATATEKVRIDIINSLKLKNPY-VTIASFDRKNLFYGVKVI--NRG------QSFVDE 216 (374)
Q Consensus 147 ~~~~~~~~~~~~~-~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~------~~~~~~ 216 (374)
....+..+..+.. ...++|++|||.++.. ++..+++...+. +...+............. ... ...-.-
T Consensus 260 tiVaRtlr~vessqs~IRivgLSATlPN~e--DvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~ 337 (1230)
T KOG0952|consen 260 TIVARTLRLVESSQSMIRIVGLSATLPNYE--DVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEV 337 (1230)
T ss_pred HHHHHHHHHHHhhhhheEEEEeeccCCCHH--HHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHH
Confidence 5555555544432 3688999999999865 678888887432 222222222222222111 111 111123
Q ss_pred HHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcC-----------------------CceeeeecCCChHHHHHHHHh
Q 037567 217 LVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLG-----------------------VKAGTYHGQMGSKAREEAHRL 273 (374)
Q Consensus 217 ~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~-----------------------~~~~~~~~~~~~~~r~~~~~~ 273 (374)
...++.+.+..+.+++|||.+++...+.++.|.+.. ...+++|.++..++|+.....
T Consensus 338 ~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~ 417 (1230)
T KOG0952|consen 338 CYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKE 417 (1230)
T ss_pred HHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHH
Confidence 345566667789999999999999999998887641 225678999999999999999
Q ss_pred hhcCCeeEEEEeccccccccccCccEEEE----ECCC------CChhHHHHhhccCCCC--CCceEEEEEeeccCCCccc
Q 037567 274 FIRDEIRVMVATMAFGMGIDKPDVRHVIH----YGCP------KTLESYYQESGRCGRD--GIASVCWLYYARSNFAKGD 341 (374)
Q Consensus 274 f~~g~~~ilv~t~~~~~G~d~~~~~~vi~----~~~p------~s~~~~~Q~~GR~~R~--~~~g~~~~~~~~~~~~~~~ 341 (374)
|..|.++||+||+.+..|+|+|+-.++|- ++.. ....+.+|++|||||. ...|.+++..+.+-+.++.
T Consensus 418 F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~ 497 (1230)
T KOG0952|consen 418 FKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYE 497 (1230)
T ss_pred HhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHH
Confidence 99999999999999999999996555551 2221 1567889999999997 4678899998888888888
Q ss_pred ceeccccchHHHH
Q 037567 342 FYCGESQTENQRT 354 (374)
Q Consensus 342 ~~~~~~~~~~~~~ 354 (374)
.++....+-+.+.
T Consensus 498 sLl~~~~piES~~ 510 (1230)
T KOG0952|consen 498 SLLTGQNPIESQL 510 (1230)
T ss_pred HHHcCCChhHHHH
Confidence 8888877766553
No 68
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=2.6e-36 Score=303.78 Aligned_cols=327 Identities=20% Similarity=0.220 Sum_probs=226.0
Q ss_pred hHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc---cCCcEEEEcchHHHHHHHHHHHHHcC--
Q 037567 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV---TGKTALVVSPLISLMQDQVMSLKQRG-- 77 (374)
Q Consensus 3 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~---~~~~~lil~P~~~l~~q~~~~~~~~~-- 77 (374)
+.|++.+|| +|+++|.++++.+++|+++++.||||+|||+.++++++. ++.+++|++||++|+.|+.+.++.++
T Consensus 70 ~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~ 148 (1638)
T PRK14701 70 EFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEK 148 (1638)
T ss_pred HHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhh
Confidence 457788999 699999999999999999999999999999855444332 46789999999999999999998753
Q ss_pred ----CceEEcCCCCCchhh---hhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccC-------
Q 037567 78 ----INAEFLGSAQTDSSV---QTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGH------- 143 (374)
Q Consensus 78 ----~~~~~~~~~~~~~~~---~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~------- 143 (374)
..+..++++...... ......+.++|+|+||+.+...... ....+++++|+||||.+.++|.
T Consensus 149 ~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~----l~~~~i~~iVVDEAD~ml~~~knid~~L~ 224 (1638)
T PRK14701 149 ANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPE----MKHLKFDFIFVDDVDAFLKASKNIDRSLQ 224 (1638)
T ss_pred cCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHH----HhhCCCCEEEEECceeccccccccchhhh
Confidence 333445555444332 1223456689999999987654332 2236789999999999987554
Q ss_pred --cchHHHHH-----------------------HHHHHHhcCC-CC-eeEEEeecCcccHHHHHHhcCCCCCeEEEeccC
Q 037567 144 --DFRLEYKQ-----------------------LDKLRTFLLG-VP-FVALTATATEKVRIDIINSLKLKNPYVTIASFD 196 (374)
Q Consensus 144 --~~~~~~~~-----------------------~~~~~~~~~~-~~-~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (374)
+++..+.. +......++. .+ .+.+|||.++... ....+ ..+........
T Consensus 225 llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~--~~~l~--~~~l~f~v~~~ 300 (1638)
T PRK14701 225 LLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD--RVKLY--RELLGFEVGSG 300 (1638)
T ss_pred cCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH--HHHHh--hcCeEEEecCC
Confidence 34333321 1111112222 33 5678999986321 12222 22222223333
Q ss_pred CCceeEEEEeec-CCcchHHHHHHHHHHhhcCCCcEEEEecchhH---HHHHHHHHHHcCCceeeeecCCChHHHHHHHH
Q 037567 197 RKNLFYGVKVIN-RGQSFVDELVQEILKSVAGAGSIIVYCMTIKD---VEEISKALKQLGVKAGTYHGQMGSKAREEAHR 272 (374)
Q Consensus 197 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~---~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~ 272 (374)
........+.+. ...... ..+.++++.. +..+||||+++.. ++.+++.|.+.|+++..+||+ |...++
T Consensus 301 ~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~ 372 (1638)
T PRK14701 301 RSALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFD 372 (1638)
T ss_pred CCCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHH
Confidence 333222222211 111212 3455555554 5689999999775 589999999999999999985 888999
Q ss_pred hhhcCCeeEEEEec----cccccccccC-ccEEEEECCCC---ChhHHHHhh-------------ccCCCCCCceEEEEE
Q 037567 273 LFIRDEIRVMVATM----AFGMGIDKPD-VRHVIHYGCPK---TLESYYQES-------------GRCGRDGIASVCWLY 331 (374)
Q Consensus 273 ~f~~g~~~ilv~t~----~~~~G~d~~~-~~~vi~~~~p~---s~~~~~Q~~-------------GR~~R~~~~g~~~~~ 331 (374)
+|.+|+.+|||+|+ .+.+|+|+|+ +++||+++.|. +...+.|-. ||++|.|.+..++..
T Consensus 373 ~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~ 452 (1638)
T PRK14701 373 LFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLD 452 (1638)
T ss_pred HHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHH
Confidence 99999999999994 8899999999 99999999998 777665554 999999988777655
Q ss_pred eeccCCCcccceecc
Q 037567 332 YARSNFAKGDFYCGE 346 (374)
Q Consensus 332 ~~~~~~~~~~~~~~~ 346 (374)
+...+...++.++++
T Consensus 453 ~~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 453 VFPEDVEFLRSILKD 467 (1638)
T ss_pred hHHHHHHHHHHHhcc
Confidence 555555555555543
No 69
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=9.6e-36 Score=293.78 Aligned_cols=300 Identities=21% Similarity=0.244 Sum_probs=205.9
Q ss_pred hHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcccc---ccCCcEEEEcchHHHHHHHHHHHHHcCC-
Q 037567 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL---VTGKTALVVSPLISLMQDQVMSLKQRGI- 78 (374)
Q Consensus 3 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~---~~~~~~lil~P~~~l~~q~~~~~~~~~~- 78 (374)
+.|++.+|+ +|+++|..+++.+++|+++++.||||+|||..++..+. .++.+++|++||++|+.|+.+.++.++.
T Consensus 71 ~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~ 149 (1176)
T PRK09401 71 KFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEK 149 (1176)
T ss_pred HHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhh
Confidence 346777898 79999999999999999999999999999964333222 2478899999999999999999998754
Q ss_pred ---ceEEcCCCCC--c---hhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCc------
Q 037567 79 ---NAEFLGSAQT--D---SSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHD------ 144 (374)
Q Consensus 79 ---~~~~~~~~~~--~---~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~------ 144 (374)
......+... . .........+.++|+|+||+++.... ..+....++++|+||||++.+++..
T Consensus 150 ~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~----~~l~~~~~~~lVvDEaD~~L~~~k~id~~l~ 225 (1176)
T PRK09401 150 VGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNF----DELPKKKFDFVFVDDVDAVLKSSKNIDKLLY 225 (1176)
T ss_pred cCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHH----HhccccccCEEEEEChHHhhhcccchhhHHH
Confidence 3233322221 1 11122233467899999999886532 2334456999999999999864322
Q ss_pred ---ch-HHHH-----------------HHHHHHHhc-----CCCCeeEEEeecCcc-cHHHHHHh-cCCCCCeEEEeccC
Q 037567 145 ---FR-LEYK-----------------QLDKLRTFL-----LGVPFVALTATATEK-VRIDIINS-LKLKNPYVTIASFD 196 (374)
Q Consensus 145 ---~~-~~~~-----------------~~~~~~~~~-----~~~~~i~~SaT~~~~-~~~~~~~~-~~~~~~~~~~~~~~ 196 (374)
+. ..+. .+.++...+ ...+++++|||.++. ....+... +++. +......
T Consensus 226 ~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~---v~~~~~~ 302 (1176)
T PRK09401 226 LLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGFE---VGSPVFY 302 (1176)
T ss_pred hCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceEE---ecCcccc
Confidence 21 1111 111111111 156899999999874 32211111 1111 1111111
Q ss_pred CCceeEEEEeecCCcchHHHHHHHHHHhhcCCCcEEEEecchhH---HHHHHHHHHHcCCceeeeecCCChHHHHHHHHh
Q 037567 197 RKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD---VEEISKALKQLGVKAGTYHGQMGSKAREEAHRL 273 (374)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~---~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 273 (374)
..++...+.... ...+.+.++++.. +.++||||++... ++.+++.|...|+++..+||++ + ..+++
T Consensus 303 ~rnI~~~yi~~~----~k~~~L~~ll~~l--~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l----~-~~l~~ 371 (1176)
T PRK09401 303 LRNIVDSYIVDE----DSVEKLVELVKRL--GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF----E-RKFEK 371 (1176)
T ss_pred cCCceEEEEEcc----cHHHHHHHHHHhc--CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH----H-HHHHH
Confidence 222222221111 2334455555554 4689999999777 9999999999999999999998 2 23599
Q ss_pred hhcCCeeEEEE----eccccccccccC-ccEEEEECCCC------ChhHHHHhhccCCC
Q 037567 274 FIRDEIRVMVA----TMAFGMGIDKPD-VRHVIHYGCPK------TLESYYQESGRCGR 321 (374)
Q Consensus 274 f~~g~~~ilv~----t~~~~~G~d~~~-~~~vi~~~~p~------s~~~~~Q~~GR~~R 321 (374)
|++|+.+|||+ |+.+++|+|+|+ +++||+++.|. ....+.+++||+..
T Consensus 372 F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 372 FEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred HHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 99999999999 589999999999 89999999998 56889999999863
No 70
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=5.8e-35 Score=264.54 Aligned_cols=290 Identities=20% Similarity=0.269 Sum_probs=204.8
Q ss_pred CCchhHHHHHHHHHc----CCCEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHHcCCce---EEcCC
Q 037567 13 VFRPYQKDVIQRIIE----KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGINA---EFLGS 85 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~----~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~---~~~~~ 85 (374)
.+++||.+++.++.. ++..++++|||+|||.+++..+..-..++|||||+.+|+.||.+.+..+.... ...++
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~~~~g~~~~ 115 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKRSTLVLVPTKELLDQWAEALKKFLLLNDEIGIYGG 115 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcCCEEEEECcHHHHHHHHHHHHHhcCCccccceecC
Confidence 599999999999998 88999999999999999887777766779999999999999998877664332 22322
Q ss_pred CCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCC-e
Q 037567 86 AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVP-F 164 (374)
Q Consensus 86 ~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 164 (374)
+...... ..|.|+|.+++.... .......+.+++||+|||||+.... ...+...+.+.. +
T Consensus 116 ~~~~~~~--------~~i~vat~qtl~~~~--~l~~~~~~~~~liI~DE~Hh~~a~~---------~~~~~~~~~~~~~~ 176 (442)
T COG1061 116 GEKELEP--------AKVTVATVQTLARRQ--LLDEFLGNEFGLIIFDEVHHLPAPS---------YRRILELLSAAYPR 176 (442)
T ss_pred ceeccCC--------CcEEEEEhHHHhhhh--hhhhhcccccCEEEEEccccCCcHH---------HHHHHHhhhcccce
Confidence 2111110 269999999886542 2234444579999999999987522 233333333444 9
Q ss_pred eEEEeecCcccHHHHHHhcCCCCCeEEEecc--------CCCceeEEEEe-ecC--------------------------
Q 037567 165 VALTATATEKVRIDIINSLKLKNPYVTIASF--------DRKNLFYGVKV-INR-------------------------- 209 (374)
Q Consensus 165 i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~-~~~-------------------------- 209 (374)
++|||||...+............+.+..... -.+........ ...
T Consensus 177 LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (442)
T COG1061 177 LGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAE 256 (442)
T ss_pred eeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHH
Confidence 9999998876522222211111122221110 01111111111 000
Q ss_pred --------CcchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeE
Q 037567 210 --------GQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRV 281 (374)
Q Consensus 210 --------~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~i 281 (374)
........+..++.....+.+++||+.+..++..++..+...+. +..+.++.+..+|.++++.|+.|.+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~ 335 (442)
T COG1061 257 NEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKV 335 (442)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCE
Confidence 00001111222222211577999999999999999999988777 889999999999999999999999999
Q ss_pred EEEeccccccccccCccEEEEECCCCChhHHHHhhccCCCC
Q 037567 282 MVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRD 322 (374)
Q Consensus 282 lv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~ 322 (374)
|+++.++.+|+|+|+++++|..++..|...|.||+||..|.
T Consensus 336 lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 336 LVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred EEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 99999999999999999999999999999999999999993
No 71
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=8.2e-35 Score=267.51 Aligned_cols=325 Identities=18% Similarity=0.160 Sum_probs=227.3
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc---cCCcEEEEcchHHHHHHHHHHHHH---
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV---TGKTALVVSPLISLMQDQVMSLKQ--- 75 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~---~~~~~lil~P~~~l~~q~~~~~~~--- 75 (374)
.++.++.+|+. |+|.|..+++.+++|+ +..+.||+|||+++.+|++. .++.++|++|++.|+.|.++++..
T Consensus 93 rEa~~R~lg~~-p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~~ 169 (656)
T PRK12898 93 REASGRVLGQR-HFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYE 169 (656)
T ss_pred HHHHHHHhCCC-CChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHHh
Confidence 45677888995 8999999999999998 99999999999999988875 478999999999999998888775
Q ss_pred -cCCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccc-cCchhhH-----------------------HHHHhcCccEE
Q 037567 76 -RGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKAC-IIPISFW-----------------------SKLLKAGVCLF 130 (374)
Q Consensus 76 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~-~~~~~~~-----------------------~~~~~~~~~~v 130 (374)
+|+.+..+.++.... .......++|+++|...+. ++++... .......+.+.
T Consensus 170 ~lGlsv~~i~gg~~~~---~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~a 246 (656)
T PRK12898 170 ALGLTVGCVVEDQSPD---ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFA 246 (656)
T ss_pred hcCCEEEEEeCCCCHH---HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccccccee
Confidence 377877776654322 2223456899999998762 2332211 11223567899
Q ss_pred EEeccchhh-cc--------c---Cc-chHHH--------------------------------HHHHHH----------
Q 037567 131 AVDEAHCIS-EW--------G---HD-FRLEY--------------------------------KQLDKL---------- 155 (374)
Q Consensus 131 viDE~h~~~-~~--------~---~~-~~~~~--------------------------------~~~~~~---------- 155 (374)
||||++.+. +. | .. ....+ ..+...
T Consensus 247 IvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~ 326 (656)
T PRK12898 247 IVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRG 326 (656)
T ss_pred EeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhccc
Confidence 999999974 10 0 00 00000 000000
Q ss_pred -----------H---Hhc-------------------------------------------C------------------
Q 037567 156 -----------R---TFL-------------------------------------------L------------------ 160 (374)
Q Consensus 156 -----------~---~~~-------------------------------------------~------------------ 160 (374)
+ ..+ +
T Consensus 327 ~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr 406 (656)
T PRK12898 327 AVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFR 406 (656)
T ss_pred chHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHH
Confidence 0 000 0
Q ss_pred -CCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEEEeecCCcchHHHHHHHHHHhhcCCCcEEEEecchh
Q 037567 161 -GVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239 (374)
Q Consensus 161 -~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~ 239 (374)
-.++.+||||.... ..++...+++....+...... ........++.........++..+......+.++||||++++
T Consensus 407 ~Y~kl~GmTGTa~~~-~~El~~~y~l~vv~IPt~kp~-~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~ 484 (656)
T PRK12898 407 RYLRLAGMTGTAREV-AGELWSVYGLPVVRIPTNRPS-QRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVA 484 (656)
T ss_pred hhHHHhcccCcChHH-HHHHHHHHCCCeEEeCCCCCc-cceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 01367888888754 346777776653222222222 212222223333333444444444443335688999999999
Q ss_pred HHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEecccccccccc---Ccc-----EEEEECCCCChhH
Q 037567 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP---DVR-----HVIHYGCPKTLES 311 (374)
Q Consensus 240 ~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~---~~~-----~vi~~~~p~s~~~ 311 (374)
.++.+++.|.+.|+++..+||+++. ++..+..+..++..|+|||+++++|+|++ ++. +||+++.|.|...
T Consensus 485 ~se~L~~~L~~~gi~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~ 562 (656)
T PRK12898 485 ASERLSALLREAGLPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARI 562 (656)
T ss_pred HHHHHHHHHHHCCCCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHH
Confidence 9999999999999999999998654 44445555555567999999999999999 565 8999999999999
Q ss_pred HHHhhccCCCCCCceEEEEEeeccC
Q 037567 312 YYQESGRCGRDGIASVCWLYYARSN 336 (374)
Q Consensus 312 ~~Q~~GR~~R~~~~g~~~~~~~~~~ 336 (374)
|.||+||+||.|.+|.++.+++.+|
T Consensus 563 y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 563 DRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred HHHhcccccCCCCCeEEEEEechhH
Confidence 9999999999999999999999876
No 72
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=2.7e-35 Score=273.78 Aligned_cols=324 Identities=17% Similarity=0.158 Sum_probs=222.6
Q ss_pred hHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc---cCCcEEEEcchHHHHHHHHHHHH----H
Q 037567 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV---TGKTALVVSPLISLMQDQVMSLK----Q 75 (374)
Q Consensus 3 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~---~~~~~lil~P~~~l~~q~~~~~~----~ 75 (374)
++-++.+|. +|+|.+++..+..+++.++.++||+|||++|.+|++. .+..++|++|++.|+.|+.+++. .
T Consensus 61 Ea~~R~lgl---rpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~~ 137 (762)
T TIGR03714 61 EADKRVLGM---FPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEW 137 (762)
T ss_pred HHHHhhcCC---CccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHHhh
Confidence 455666665 5666666666555555799999999999999988654 46779999999999999999885 4
Q ss_pred cCCceEEcCCCCC--chhhhhhhhcCCeeEEEEcCccc-ccCchhh----HHHHHhcCccEEEEeccchhhc-c------
Q 037567 76 RGINAEFLGSAQT--DSSVQTKAETGYFQLLFMTPEKA-CIIPISF----WSKLLKAGVCLFAVDEAHCISE-W------ 141 (374)
Q Consensus 76 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~i~T~~~l-~~~~~~~----~~~~~~~~~~~vviDE~h~~~~-~------ 141 (374)
+|+.+.+..++.. ............++|+++||+.+ .+++... .......++.++|+||||.+.- .
T Consensus 138 LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpli 217 (762)
T TIGR03714 138 LGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLV 217 (762)
T ss_pred cCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCee
Confidence 5777766544311 11111222335689999999998 3333221 1223456788999999999841 0
Q ss_pred --cC--cchHHHHHHHHHHHhcC---------------------------------------------------------
Q 037567 142 --GH--DFRLEYKQLDKLRTFLL--------------------------------------------------------- 160 (374)
Q Consensus 142 --~~--~~~~~~~~~~~~~~~~~--------------------------------------------------------- 160 (374)
|. .....+.....+...+.
T Consensus 218 isg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~ 297 (762)
T TIGR03714 218 ISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKR 297 (762)
T ss_pred eeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhc
Confidence 00 00000000000000000
Q ss_pred -------------------------------------------------------------CCCeeEEEeecCcccHHHH
Q 037567 161 -------------------------------------------------------------GVPFVALTATATEKVRIDI 179 (374)
Q Consensus 161 -------------------------------------------------------------~~~~i~~SaT~~~~~~~~~ 179 (374)
-.++.+||+|.... ..++
T Consensus 298 d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~-~~Ef 376 (762)
T TIGR03714 298 NKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVA-EKEF 376 (762)
T ss_pred CCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhH-HHHH
Confidence 01366777775432 2344
Q ss_pred HHhcCCCCCeEEEeccCCCceeEEE--EeecCCcchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceee
Q 037567 180 INSLKLKNPYVTIASFDRKNLFYGV--KVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGT 257 (374)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~ 257 (374)
...+++. +...+.+.+...... ..+.........++..+.+....+.++||||+++..++.+++.|.+.|+++..
T Consensus 377 ~~iY~l~---v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~ 453 (762)
T TIGR03714 377 IETYSLS---VVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNL 453 (762)
T ss_pred HHHhCCC---EEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEE
Confidence 4444332 222222333222222 23344445566666666665567899999999999999999999999999999
Q ss_pred eecCCChHHHHHHHHhhhcCCeeEEEEecccccccccc---------CccEEEEECCCCChhHHHHhhccCCCCCCceEE
Q 037567 258 YHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP---------DVRHVIHYGCPKTLESYYQESGRCGRDGIASVC 328 (374)
Q Consensus 258 ~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~---------~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~ 328 (374)
+|+++...++..+...++.| .|+|||+++++|+|+| ++.+|+++++|....+ .||+||+||.|.+|.+
T Consensus 454 L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s 530 (762)
T TIGR03714 454 LNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSS 530 (762)
T ss_pred ecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeE
Confidence 99999988888887777776 7999999999999999 8999999999988766 9999999999999999
Q ss_pred EEEeeccC
Q 037567 329 WLYYARSN 336 (374)
Q Consensus 329 ~~~~~~~~ 336 (374)
+.+++.+|
T Consensus 531 ~~~is~eD 538 (762)
T TIGR03714 531 QFFVSLED 538 (762)
T ss_pred EEEEccch
Confidence 99998876
No 73
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=7.3e-35 Score=273.51 Aligned_cols=324 Identities=18% Similarity=0.142 Sum_probs=230.2
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc---cCCcEEEEcchHHHHHHHHHHHHH---
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV---TGKTALVVSPLISLMQDQVMSLKQ--- 75 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~---~~~~~lil~P~~~l~~q~~~~~~~--- 75 (374)
+++.++.+|+ .|++.|..+...+.+|+ +..+.||+|||+++++|++. .+..++|++|++.||.|.++++..
T Consensus 68 rea~~R~~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~~ 144 (790)
T PRK09200 68 REAAKRVLGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYE 144 (790)
T ss_pred HHHHHHHhCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHHh
Confidence 4667788898 59999999999888776 99999999999999988763 588999999999999998888765
Q ss_pred -cCCceEEcCCCCCchhhhhhhhcCCeeEEEEcCccc-ccCchhh----HHHHHhcCccEEEEeccchhh-cc-------
Q 037567 76 -RGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKA-CIIPISF----WSKLLKAGVCLFAVDEAHCIS-EW------- 141 (374)
Q Consensus 76 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l-~~~~~~~----~~~~~~~~~~~vviDE~h~~~-~~------- 141 (374)
+|+.+.+..++........ ....++|+++||..+ .+++... .......++.++|+||+|.+. +.
T Consensus 145 ~lGl~v~~i~g~~~~~~~r~--~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tplii 222 (790)
T PRK09200 145 FLGLTVGLNFSDIDDASEKK--AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLII 222 (790)
T ss_pred hcCCeEEEEeCCCCcHHHHH--HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceee
Confidence 4788887776655222222 234589999999988 2222221 123445778999999999985 10
Q ss_pred -cC--cchHHHHHHHHHHHhcC----------------------------------------------------------
Q 037567 142 -GH--DFRLEYKQLDKLRTFLL---------------------------------------------------------- 160 (374)
Q Consensus 142 -~~--~~~~~~~~~~~~~~~~~---------------------------------------------------------- 160 (374)
|. .....+.....+...+.
T Consensus 223 sg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d 302 (790)
T PRK09200 223 SGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRD 302 (790)
T ss_pred eCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcC
Confidence 00 00000000000000000
Q ss_pred ------------------------------------------------------------CCCeeEEEeecCcccHHHHH
Q 037567 161 ------------------------------------------------------------GVPFVALTATATEKVRIDII 180 (374)
Q Consensus 161 ------------------------------------------------------------~~~~i~~SaT~~~~~~~~~~ 180 (374)
=.++.+||+|..... .++.
T Consensus 303 ~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~-~e~~ 381 (790)
T PRK09200 303 VDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEE-KEFF 381 (790)
T ss_pred CcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHH-HHHH
Confidence 012667777764432 2444
Q ss_pred HhcCCCCCeEEEeccCCCceeEEE--EeecCCcchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeee
Q 037567 181 NSLKLKNPYVTIASFDRKNLFYGV--KVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTY 258 (374)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~ 258 (374)
..+++.- ...+.+.+...... ..+.........++..+.+....+.++||||+++..++.+++.|.+.|+++..+
T Consensus 382 ~~Y~l~v---~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L 458 (790)
T PRK09200 382 EVYNMEV---VQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLL 458 (790)
T ss_pred HHhCCcE---EECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEe
Confidence 4444322 22222233222221 223333444555556555544578999999999999999999999999999999
Q ss_pred ecCCChHHHHHHHHhhhcCCeeEEEEeccccccccc---cCcc-----EEEEECCCCChhHHHHhhccCCCCCCceEEEE
Q 037567 259 HGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK---PDVR-----HVIHYGCPKTLESYYQESGRCGRDGIASVCWL 330 (374)
Q Consensus 259 ~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~---~~~~-----~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~ 330 (374)
||++...++..+...+..| .|+|||+++++|+|+ |++. +||+++.|.|...|.||+||+||.|.+|.++.
T Consensus 459 ~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~ 536 (790)
T PRK09200 459 NAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQF 536 (790)
T ss_pred cCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEE
Confidence 9999888888887777766 799999999999999 6898 99999999999999999999999999999999
Q ss_pred EeeccC
Q 037567 331 YYARSN 336 (374)
Q Consensus 331 ~~~~~~ 336 (374)
+++.+|
T Consensus 537 ~is~eD 542 (790)
T PRK09200 537 FISLED 542 (790)
T ss_pred EEcchH
Confidence 998765
No 74
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=2.9e-34 Score=280.63 Aligned_cols=317 Identities=21% Similarity=0.224 Sum_probs=215.4
Q ss_pred CCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc----cCCcEEEEcchHHHHHHHHHHHHHc-CC---ceEE
Q 037567 11 YSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV----TGKTALVVSPLISLMQDQVMSLKQR-GI---NAEF 82 (374)
Q Consensus 11 ~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~----~~~~~lil~P~~~l~~q~~~~~~~~-~~---~~~~ 82 (374)
.-++++||.+++..++.+ ++++++|||+|||+++++++.. .+.++||++|+++|++||.+.++.+ +. .+..
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~ 91 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVV 91 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEE
Confidence 347999999999988777 8999999999999887665543 3689999999999999999999875 33 4444
Q ss_pred cCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHH-HHHHHhcCC
Q 037567 83 LGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQL-DKLRTFLLG 161 (374)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~-~~~~~~~~~ 161 (374)
+.+...... . .......+|+|+||+.+...+.. .......++++|+||||++...... ..+ .......+.
T Consensus 92 ~~g~~~~~~-r-~~~~~~~~iiv~T~~~l~~~l~~--~~~~~~~~~liVvDEaH~~~~~~~~-----~~i~~~~~~~~~~ 162 (773)
T PRK13766 92 FTGEVSPEK-R-AELWEKAKVIVATPQVIENDLIA--GRISLEDVSLLIFDEAHRAVGNYAY-----VYIAERYHEDAKN 162 (773)
T ss_pred EeCCCCHHH-H-HHHHhCCCEEEECHHHHHHHHHc--CCCChhhCcEEEEECCccccccccH-----HHHHHHHHhcCCC
Confidence 444433322 1 12223468999999877543221 2334567899999999998642211 112 222222334
Q ss_pred CCeeEEEeecCcccH--HHHHHhcCCCCCeEE-----------------EeccCC------------------------C
Q 037567 162 VPFVALTATATEKVR--IDIINSLKLKNPYVT-----------------IASFDR------------------------K 198 (374)
Q Consensus 162 ~~~i~~SaT~~~~~~--~~~~~~~~~~~~~~~-----------------~~~~~~------------------------~ 198 (374)
..+++|||||..... ..+...+++....+. ...... .
T Consensus 163 ~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~ 242 (773)
T PRK13766 163 PLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKEL 242 (773)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 569999999854321 122222221110000 000000 0
Q ss_pred ceeEEEE-------------------------------------------------------------------------
Q 037567 199 NLFYGVK------------------------------------------------------------------------- 205 (374)
Q Consensus 199 ~~~~~~~------------------------------------------------------------------------- 205 (374)
.......
T Consensus 243 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~ 322 (773)
T PRK13766 243 GVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKA 322 (773)
T ss_pred CCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHH
Confidence 0000000
Q ss_pred ------------------eecCCcchHHHHHHHHHHhh---cCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecC---
Q 037567 206 ------------------VINRGQSFVDELVQEILKSV---AGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQ--- 261 (374)
Q Consensus 206 ------------------~~~~~~~~~~~~~~~~~~~~---~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~--- 261 (374)
..... ..+.+.+.++++.. .+++++||||++...++.+++.|...++.+..+||.
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~-~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~ 401 (773)
T PRK13766 323 SKRLVEDPRFRKAVRKAKELDIE-HPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASK 401 (773)
T ss_pred HHHHHhCHHHHHHHHHHHhcccC-ChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccc
Confidence 00000 00111122222221 467899999999999999999999999999999886
Q ss_pred -----CChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCCChhHHHHhhccCCCCCCceEEEEEeeccC
Q 037567 262 -----MGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN 336 (374)
Q Consensus 262 -----~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 336 (374)
++..+|..++++|++|+.++||+|+++++|+|+|.+++||++++|++...++||+||+||.+. |.+++++..+.
T Consensus 402 ~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t 480 (773)
T PRK13766 402 DGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGT 480 (773)
T ss_pred cccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCC
Confidence 788899999999999999999999999999999999999999999999999999999999875 77777777765
Q ss_pred CCc
Q 037567 337 FAK 339 (374)
Q Consensus 337 ~~~ 339 (374)
.+.
T Consensus 481 ~ee 483 (773)
T PRK13766 481 RDE 483 (773)
T ss_pred hHH
Confidence 543
No 75
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=2.3e-34 Score=266.01 Aligned_cols=323 Identities=20% Similarity=0.159 Sum_probs=234.0
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc---cCCcEEEEcchHHHHHHHHHHHHHc--
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV---TGKTALVVSPLISLMQDQVMSLKQR-- 76 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~---~~~~~lil~P~~~l~~q~~~~~~~~-- 76 (374)
+++.++.+|+. |++.|..+...+.+|+ +..++||+|||+++.++++. .+..+.|++|+..||.|.++++..+
T Consensus 46 rEa~~R~lg~~-p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~ 122 (745)
T TIGR00963 46 REASKRVLGMR-PFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYR 122 (745)
T ss_pred HHHHHHHhCCC-ccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhc
Confidence 46677888885 8999999888887776 99999999999999888742 4778999999999999999888764
Q ss_pred --CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCccc-ccCchhh----HHHHHhcCccEEEEeccchhhc-c-------
Q 037567 77 --GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKA-CIIPISF----WSKLLKAGVCLFAVDEAHCISE-W------- 141 (374)
Q Consensus 77 --~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l-~~~~~~~----~~~~~~~~~~~vviDE~h~~~~-~------- 141 (374)
|+.+.+..++...... .....++|+++||..+ .++++.. .......++.++|+||+|.+.- .
T Consensus 123 ~LGLsv~~i~g~~~~~~r---~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLii 199 (745)
T TIGR00963 123 FLGLSVGLILSGMSPEER---REAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLII 199 (745)
T ss_pred cCCCeEEEEeCCCCHHHH---HHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhh
Confidence 6777777665443322 2223479999999988 5554432 1245667899999999999852 0
Q ss_pred -cC--cchHHHH--------------------------------HHHH----------------------HHH--hc---
Q 037567 142 -GH--DFRLEYK--------------------------------QLDK----------------------LRT--FL--- 159 (374)
Q Consensus 142 -~~--~~~~~~~--------------------------------~~~~----------------------~~~--~~--- 159 (374)
|. .....+. .+.. +.. .+
T Consensus 200 sg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d 279 (745)
T TIGR00963 200 SGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKD 279 (745)
T ss_pred cCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcC
Confidence 10 0000000 0000 000 00
Q ss_pred -----------------------------------------------------------CCCCeeEEEeecCcccHHHHH
Q 037567 160 -----------------------------------------------------------LGVPFVALTATATEKVRIDII 180 (374)
Q Consensus 160 -----------------------------------------------------------~~~~~i~~SaT~~~~~~~~~~ 180 (374)
.-.++.+||+|..... ..+.
T Consensus 280 ~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~-~E~~ 358 (745)
T TIGR00963 280 VDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEE-EEFE 358 (745)
T ss_pred CcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHH-HHHH
Confidence 0012566666664332 2344
Q ss_pred HhcCCCCCeEEEeccCCCce--eEEEEeecCCcchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeee
Q 037567 181 NSLKLKNPYVTIASFDRKNL--FYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTY 258 (374)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~ 258 (374)
..+++. +...+.+.+.. .....++.........++.++.+....+.++||||+++..++.+++.|.+.|++...+
T Consensus 359 ~iY~l~---vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~L 435 (745)
T TIGR00963 359 KIYNLE---VVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVL 435 (745)
T ss_pred HHhCCC---EEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEe
Confidence 444433 22222222222 2222233444455667778887777789999999999999999999999999999999
Q ss_pred ecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccC-------ccEEEEECCCCChhHHHHhhccCCCCCCceEEEEE
Q 037567 259 HGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD-------VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLY 331 (374)
Q Consensus 259 ~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~-------~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~ 331 (374)
|++ ..+|+..+..|..+...|+|||+++++|+|++. ..+||+++.|.|...+.|++||+||.|.+|.+..+
T Consensus 436 na~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ 513 (745)
T TIGR00963 436 NAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFF 513 (745)
T ss_pred eCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEE
Confidence 998 778899999999999999999999999999998 45999999999999999999999999999999999
Q ss_pred eeccC
Q 037567 332 YARSN 336 (374)
Q Consensus 332 ~~~~~ 336 (374)
++.+|
T Consensus 514 ls~eD 518 (745)
T TIGR00963 514 LSLED 518 (745)
T ss_pred EeccH
Confidence 98876
No 76
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=1.4e-32 Score=264.34 Aligned_cols=318 Identities=17% Similarity=0.159 Sum_probs=213.4
Q ss_pred CCchhHHHHHHHHHcC--CCEEEEccCCCCchhhhhccccc-----cCCcEEEEcchHHHHHHHHHHHH-HcCCceEEcC
Q 037567 13 VFRPYQKDVIQRIIEK--RDCLVVMATGSGKSLCYQLPPLV-----TGKTALVVSPLISLMQDQVMSLK-QRGINAEFLG 84 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~--~~~l~~a~tGsGKT~~~~l~~~~-----~~~~~lil~P~~~l~~q~~~~~~-~~~~~~~~~~ 84 (374)
.|.|||..+...+.+. ..+++...+|.|||+.+.+.+.. ...++||+||. .|..||..++. ++++...++.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~~~i~~ 230 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFNLRFSLFD 230 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhCCCeEEEc
Confidence 5999999999887653 47899999999999776544322 34689999998 89999999985 5777766654
Q ss_pred CCCCchhh-hhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCC
Q 037567 85 SAQTDSSV-QTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVP 163 (374)
Q Consensus 85 ~~~~~~~~-~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (374)
........ .........+++|++++.+..... ....+....++++|+||||++..........+..+..+... ...
T Consensus 231 ~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~-~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~--~~~ 307 (956)
T PRK04914 231 EERYAEAQHDADNPFETEQLVICSLDFLRRNKQ-RLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEV--IPG 307 (956)
T ss_pred CcchhhhcccccCccccCcEEEEEHHHhhhCHH-HHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhc--cCC
Confidence 43211100 000111245799999988754321 22344456899999999999974221222223444444332 347
Q ss_pred eeEEEeecCcccHHHHHHhcCCCCCeEEE---------------------------------------------------
Q 037567 164 FVALTATATEKVRIDIINSLKLKNPYVTI--------------------------------------------------- 192 (374)
Q Consensus 164 ~i~~SaT~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------- 192 (374)
++++||||......++...+.+-+|....
T Consensus 308 ~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~~ 387 (956)
T PRK04914 308 VLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQA 387 (956)
T ss_pred EEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHhh
Confidence 89999998764333222221111110000
Q ss_pred -----------------------------eccC------C-CceeEEEEeecCC--------------------------
Q 037567 193 -----------------------------ASFD------R-KNLFYGVKVINRG-------------------------- 210 (374)
Q Consensus 193 -----------------------------~~~~------~-~~~~~~~~~~~~~-------------------------- 210 (374)
.... . ......+. ....
T Consensus 388 ~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~-l~~~~~y~~~~~~~~~~~~~~~l~pe~~~~ 466 (956)
T PRK04914 388 ANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIP-LPLPEQYQTAIKVSLEARARDMLYPEQIYQ 466 (956)
T ss_pred hcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEee-cCCCHHHHHHHHHhHHHHHHhhcCHHHHHH
Confidence 0000 0 00000000 0000
Q ss_pred ----------cchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHH-HcCCceeeeecCCChHHHHHHHHhhhcC--
Q 037567 211 ----------QSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALK-QLGVKAGTYHGQMGSKAREEAHRLFIRD-- 277 (374)
Q Consensus 211 ----------~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g-- 277 (374)
.....+.+.++++.. .+.|+||||+++..+..+.+.|+ ..|+++..+||+++..+|.+.++.|+++
T Consensus 467 ~~~~~~~~~~~d~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~ 545 (956)
T PRK04914 467 EFEDNATWWNFDPRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEED 545 (956)
T ss_pred HHhhhhhccccCHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCC
Confidence 001112233333332 36799999999999999999995 5699999999999999999999999984
Q ss_pred CeeEEEEeccccccccccCccEEEEECCCCChhHHHHhhccCCCCCCceEEEEEeeccC
Q 037567 278 EIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN 336 (374)
Q Consensus 278 ~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 336 (374)
...|||||.++++|+|++.+++||++++|+++..|.||+||++|.|+.+.+.+++....
T Consensus 546 ~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~ 604 (956)
T PRK04914 546 GAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLE 604 (956)
T ss_pred CccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCC
Confidence 58999999999999999999999999999999999999999999999988766665443
No 77
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=1.3e-32 Score=261.16 Aligned_cols=322 Identities=20% Similarity=0.228 Sum_probs=224.7
Q ss_pred CCchhHHHHHHHHHcC---CCEEEEccCCCCchhhhhccc---cccCCcEEEEcchHHHHHHHHHHHHH-cCCceEEcCC
Q 037567 13 VFRPYQKDVIQRIIEK---RDCLVVMATGSGKSLCYQLPP---LVTGKTALVVSPLISLMQDQVMSLKQ-RGINAEFLGS 85 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~---~~~l~~a~tGsGKT~~~~l~~---~~~~~~~lil~P~~~l~~q~~~~~~~-~~~~~~~~~~ 85 (374)
.+++.|.++++.+.++ +++++.|+||||||.+|+.++ +..+.++||++|+++|+.|+.+.+++ ++..+..+++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s 223 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHS 223 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 5899999999999874 789999999999999887654 34578999999999999999999986 5777777777
Q ss_pred CCCchhh---hhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCc-chHHHHHHHHHHHhcCC
Q 037567 86 AQTDSSV---QTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHD-FRLEYKQLDKLRTFLLG 161 (374)
Q Consensus 86 ~~~~~~~---~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~-~~~~~~~~~~~~~~~~~ 161 (374)
+.+..+. +.....+.++|+|+|+..+. ..+.++++||+||+|....++.. .......+...+....+
T Consensus 224 ~~s~~~r~~~~~~~~~g~~~IVVgTrsal~---------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~~ 294 (679)
T PRK05580 224 GLSDGERLDEWRKAKRGEAKVVIGARSALF---------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLEN 294 (679)
T ss_pred CCCHHHHHHHHHHHHcCCCCEEEeccHHhc---------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhccC
Confidence 6555432 33344567899999987542 23578899999999987543321 11112344445555668
Q ss_pred CCeeEEEeecCcccHHHHHHhcCCCCCeEEEe-ccCCCceeEEEEeecC--------CcchHHHHHHHHHHhhcCCCcEE
Q 037567 162 VPFVALTATATEKVRIDIINSLKLKNPYVTIA-SFDRKNLFYGVKVINR--------GQSFVDELVQEILKSVAGAGSII 232 (374)
Q Consensus 162 ~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l 232 (374)
.+++++||||+......... + ........ ...... ...+..... .......++..+.+.+..++++|
T Consensus 295 ~~~il~SATps~~s~~~~~~--g-~~~~~~l~~r~~~~~-~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~qvl 370 (679)
T PRK05580 295 IPVVLGSATPSLESLANAQQ--G-RYRLLRLTKRAGGAR-LPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLERGEQVL 370 (679)
T ss_pred CCEEEEcCCCCHHHHHHHhc--c-ceeEEEeccccccCC-CCeEEEEechhhhhhcccCCCCHHHHHHHHHHHHcCCeEE
Confidence 99999999998765432211 1 11111111 100000 001111110 01123556666777777788999
Q ss_pred EEecchh------------------------------------------------------------HHHHHHHHHHHc-
Q 037567 233 VYCMTIK------------------------------------------------------------DVEEISKALKQL- 251 (374)
Q Consensus 233 Vf~~~~~------------------------------------------------------------~~~~l~~~l~~~- 251 (374)
||+|++. ..+++++.|++.
T Consensus 371 l~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~f 450 (679)
T PRK05580 371 LFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELF 450 (679)
T ss_pred EEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhC
Confidence 9987532 456777778775
Q ss_pred -CCceeeeecCCC--hHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCC--CC----------hhHHHHhh
Q 037567 252 -GVKAGTYHGQMG--SKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCP--KT----------LESYYQES 316 (374)
Q Consensus 252 -~~~~~~~~~~~~--~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p--~s----------~~~~~Q~~ 316 (374)
+.++..+|+++. ..+++.++++|.+|+.+|||+|++++.|+|+|+++.|+.++.. .+ ...+.|++
T Consensus 451 p~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~ 530 (679)
T PRK05580 451 PEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVA 530 (679)
T ss_pred CCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHH
Confidence 678899999985 4678999999999999999999999999999999998765543 22 35689999
Q ss_pred ccCCCCCCceEEEEEeeccCCCcccceeccc
Q 037567 317 GRCGRDGIASVCWLYYARSNFAKGDFYCGES 347 (374)
Q Consensus 317 GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~ 347 (374)
||+||.+.+|.+++.....+-..++.+...+
T Consensus 531 GRagR~~~~g~viiqT~~p~~~~~~~~~~~d 561 (679)
T PRK05580 531 GRAGRAEKPGEVLIQTYHPEHPVIQALLAQD 561 (679)
T ss_pred hhccCCCCCCEEEEEeCCCCCHHHHHHHhCC
Confidence 9999999999999776555544444444333
No 78
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=5.4e-32 Score=243.66 Aligned_cols=312 Identities=22% Similarity=0.290 Sum_probs=236.3
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcC------CCEEEEccCCCCchhhhhcccc---ccCCcEEEEcchHHHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEK------RDCLVVMATGSGKSLCYQLPPL---VTGKTALVVSPLISLMQDQVMS 72 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~------~~~l~~a~tGsGKT~~~~l~~~---~~~~~~lil~P~~~l~~q~~~~ 72 (374)
.+.|...++|. ||..|.+++..+... -+-++.|+.|||||+.++++++ ..+.++.+++||.-||+|.+..
T Consensus 252 ~~~~~~~LPF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~ 330 (677)
T COG1200 252 LAKFLAALPFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYES 330 (677)
T ss_pred HHHHHHhCCCC-ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHH
Confidence 45666678995 999999999998863 2449999999999988777655 4799999999999999999988
Q ss_pred HHH----cCCceEEcCCCCCchh---hhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcc
Q 037567 73 LKQ----RGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDF 145 (374)
Q Consensus 73 ~~~----~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~ 145 (374)
+.+ +|+.+..+++...... .......+..+++|+|..-+. +...+.++.++|+||=|++.-.+
T Consensus 331 ~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ-------d~V~F~~LgLVIiDEQHRFGV~Q--- 400 (677)
T COG1200 331 LRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ-------DKVEFHNLGLVIIDEQHRFGVHQ--- 400 (677)
T ss_pred HHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh-------cceeecceeEEEEeccccccHHH---
Confidence 775 4788888887665544 344556788999999987553 44556788999999999875422
Q ss_pred hHHHHHHHHHHHhcC-CCCeeEEEeecCcccHHHHHHhcCCCCCe-EEEeccCCCceeEEEEeecCCcchHHHHHHHHHH
Q 037567 146 RLEYKQLDKLRTFLL-GVPFVALTATATEKVRIDIINSLKLKNPY-VTIASFDRKNLFYGVKVINRGQSFVDELVQEILK 223 (374)
Q Consensus 146 ~~~~~~~~~~~~~~~-~~~~i~~SaT~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (374)
-..+.+.-. ...++.|||||-|...- +..++--+.. +..-...+..+.-... ......+++..+.+
T Consensus 401 ------R~~L~~KG~~~Ph~LvMTATPIPRTLA--lt~fgDldvS~IdElP~GRkpI~T~~i----~~~~~~~v~e~i~~ 468 (677)
T COG1200 401 ------RLALREKGEQNPHVLVMTATPIPRTLA--LTAFGDLDVSIIDELPPGRKPITTVVI----PHERRPEVYERIRE 468 (677)
T ss_pred ------HHHHHHhCCCCCcEEEEeCCCchHHHH--HHHhccccchhhccCCCCCCceEEEEe----ccccHHHHHHHHHH
Confidence 122333333 45799999999986543 4444433332 2222333333322222 22445666777777
Q ss_pred hhcCCCcEEEEecchhH--------HHHHHHHHHHc--CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEecccccccc
Q 037567 224 SVAGAGSIIVYCMTIKD--------VEEISKALKQL--GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGID 293 (374)
Q Consensus 224 ~~~~~~~~lVf~~~~~~--------~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d 293 (374)
.+..+.++.|.||-.++ ++.+++.|+.. +..++.+||.|+.++++++++.|++|+++|||+|..++.|+|
T Consensus 469 ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVd 548 (677)
T COG1200 469 EIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVD 548 (677)
T ss_pred HHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEeccc
Confidence 77889999999997664 44555666643 566999999999999999999999999999999999999999
Q ss_pred ccCccEEEEECCC-CChhHHHHhhccCCCCCCceEEEEEeeccC
Q 037567 294 KPDVRHVIHYGCP-KTLESYYQESGRCGRDGIASVCWLYYARSN 336 (374)
Q Consensus 294 ~~~~~~vi~~~~p-~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 336 (374)
+|+.+++++.++- .-..+.-|..||+||.+..+.|++++.+..
T Consensus 549 VPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 549 VPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred CCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 9999998877754 467899999999999999999999988754
No 79
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=9.3e-33 Score=252.16 Aligned_cols=316 Identities=22% Similarity=0.245 Sum_probs=207.0
Q ss_pred CCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc-----cCCcEEEEcchHHHHHHHHHHHHHcCCceEEcC
Q 037567 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV-----TGKTALVVSPLISLMQDQVMSLKQRGINAEFLG 84 (374)
Q Consensus 10 ~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~-----~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 84 (374)
+.-++|.||.+..+..+ +++.++++|||+|||++++..+.. +..++++++|++-|+.|....+..++......+
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~~T~ 137 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIPYSVTG 137 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCccccee
Confidence 34479999999999999 999999999999999988776653 478999999999999999988888776533211
Q ss_pred CC-CCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcC-CC
Q 037567 85 SA-QTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLL-GV 162 (374)
Q Consensus 85 ~~-~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~-~~ 162 (374)
.. ...............+|+|+||+.+.+.+.+....- ++.+.++||||||+-..... +. .-+.......- ..
T Consensus 138 ~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~-ls~fs~iv~DE~Hra~kn~~-Y~---~Vmr~~l~~k~~~~ 212 (746)
T KOG0354|consen 138 QLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDE-LSDFSLIVFDECHRTSKNHP-YN---NIMREYLDLKNQGN 212 (746)
T ss_pred eccCccCCCchhhhhcccceEEeChHhhhhhcccccccc-cceEEEEEEccccccccccc-HH---HHHHHHHHhhhccc
Confidence 11 111111122344567999999998877665532222 57799999999998654221 11 22222222222 34
Q ss_pred CeeEEEeecCcccHHHHHH---hcC------------------------------------------------------C
Q 037567 163 PFVALTATATEKVRIDIIN---SLK------------------------------------------------------L 185 (374)
Q Consensus 163 ~~i~~SaT~~~~~~~~~~~---~~~------------------------------------------------------~ 185 (374)
+++++||||...... +.. .+. +
T Consensus 213 qILgLTASpG~~~~~-v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l 291 (746)
T KOG0354|consen 213 QILGLTASPGSKLEQ-VQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGL 291 (746)
T ss_pred cEEEEecCCCccHHH-HHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCc
Confidence 999999996643211 100 000 0
Q ss_pred CC---Ce-------EEEeccCCCceeEEE----------------------E----------------------------
Q 037567 186 KN---PY-------VTIASFDRKNLFYGV----------------------K---------------------------- 205 (374)
Q Consensus 186 ~~---~~-------~~~~~~~~~~~~~~~----------------------~---------------------------- 205 (374)
.. .. ........++..... .
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~ 371 (746)
T KOG0354|consen 292 IEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEAR 371 (746)
T ss_pred cccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcch
Confidence 00 00 000000000000000 0
Q ss_pred -------------eec----CCcchHHHHHHHHHHh--hcCCCcEEEEecchhHHHHHHHHHHH---cCCceeeee----
Q 037567 206 -------------VIN----RGQSFVDELVQEILKS--VAGAGSIIVYCMTIKDVEEISKALKQ---LGVKAGTYH---- 259 (374)
Q Consensus 206 -------------~~~----~~~~~~~~~~~~~~~~--~~~~~~~lVf~~~~~~~~~l~~~l~~---~~~~~~~~~---- 259 (374)
... ...+.+..+...+.+. ..+..++|||+.+++.+..+.+.|.. .++....+.
T Consensus 372 ~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~ 451 (746)
T KOG0354|consen 372 LIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGK 451 (746)
T ss_pred hhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccc
Confidence 000 0012222222222222 24567899999999999999999873 233433333
Q ss_pred ----cCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCCChhHHHHhhccCCCCCCceEEEEEeec
Q 037567 260 ----GQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYAR 334 (374)
Q Consensus 260 ----~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 334 (374)
.+|+..+..+++..|++|++.|||||+++++|+|++.++.||-|+...|+..++||.|| ||.. +|.+++++..
T Consensus 452 s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa~-ns~~vll~t~ 528 (746)
T KOG0354|consen 452 STQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRAR-NSKCVLLTTG 528 (746)
T ss_pred cccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cccc-CCeEEEEEcc
Confidence 36889999999999999999999999999999999999999999999999999999999 9975 5666666663
No 80
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=3.1e-31 Score=251.71 Aligned_cols=310 Identities=21% Similarity=0.298 Sum_probs=237.6
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHc----CC--CEEEEccCCCCchhhhhcc---ccccCCcEEEEcchHHHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIE----KR--DCLVVMATGSGKSLCYQLP---PLVTGKTALVVSPLISLMQDQVMS 72 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~----~~--~~l~~a~tGsGKT~~~~l~---~~~~~~~~lil~P~~~l~~q~~~~ 72 (374)
..+|...|+|. -||-|..|+..+.+ ++ |-++||+.|.|||-.++-+ +...+++|.++|||.-|++|.++.
T Consensus 584 q~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~t 662 (1139)
T COG1197 584 QEEFEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYET 662 (1139)
T ss_pred HHHHHhcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHH
Confidence 45788889996 89999999999875 33 6699999999999776544 446799999999999999999999
Q ss_pred HHH----cCCceEEcCC---CCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcc
Q 037567 73 LKQ----RGINAEFLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDF 145 (374)
Q Consensus 73 ~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~ 145 (374)
|+. +++++..+.. .............+..||+|+|..-|. +.+.+.++.++||||=|++.-
T Consensus 663 FkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~-------kdv~FkdLGLlIIDEEqRFGV----- 730 (1139)
T COG1197 663 FKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLS-------KDVKFKDLGLLIIDEEQRFGV----- 730 (1139)
T ss_pred HHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhC-------CCcEEecCCeEEEechhhcCc-----
Confidence 874 3455554433 222333455667899999999986553 344567889999999999754
Q ss_pred hHHHHHHHHHHHhcCCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEecc-CCCceeEEEEeecCCcchHHHHHHHHHHh
Q 037567 146 RLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTIASF-DRKNLFYGVKVINRGQSFVDELVQEILKS 224 (374)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (374)
..-.+++....+.-++-|||||-|.... ....|+.+-.+....+ ++..+.-.+. +.+...+ -..+++.
T Consensus 731 ----k~KEkLK~Lr~~VDvLTLSATPIPRTL~--Msm~GiRdlSvI~TPP~~R~pV~T~V~--~~d~~~i---reAI~RE 799 (1139)
T COG1197 731 ----KHKEKLKELRANVDVLTLSATPIPRTLN--MSLSGIRDLSVIATPPEDRLPVKTFVS--EYDDLLI---REAILRE 799 (1139)
T ss_pred ----cHHHHHHHHhccCcEEEeeCCCCcchHH--HHHhcchhhhhccCCCCCCcceEEEEe--cCChHHH---HHHHHHH
Confidence 2234455555688899999999997654 4445666655444433 3333332222 2222222 2233445
Q ss_pred hcCCCcEEEEecchhHHHHHHHHHHHc--CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEE
Q 037567 225 VAGAGSIIVYCMTIKDVEEISKALKQL--GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIH 302 (374)
Q Consensus 225 ~~~~~~~lVf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~ 302 (374)
+..+|++....|.++..+.+++.|++. ...+...||-|++.+-+.++.+|.+|+++|||||.+++.|+|+|+++++|.
T Consensus 800 l~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiII 879 (1139)
T COG1197 800 LLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIII 879 (1139)
T ss_pred HhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEE
Confidence 567999999999999999999999985 567889999999999999999999999999999999999999999999886
Q ss_pred ECCC-CChhHHHHhhccCCCCCCceEEEEEeecc
Q 037567 303 YGCP-KTLESYYQESGRCGRDGIASVCWLYYARS 335 (374)
Q Consensus 303 ~~~p-~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 335 (374)
.+.. .-..+..|.-||+||.+..+.||.+|++.
T Consensus 880 e~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 880 ERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred eccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 6543 46899999999999999999999999875
No 81
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=7.6e-32 Score=247.09 Aligned_cols=292 Identities=22% Similarity=0.229 Sum_probs=201.3
Q ss_pred EEEccCCCCchhhhhccc---cccCCcEEEEcchHHHHHHHHHHHHH-cCCceEEcCCCCCchhh---hhhhhcCCeeEE
Q 037567 32 LVVMATGSGKSLCYQLPP---LVTGKTALVVSPLISLMQDQVMSLKQ-RGINAEFLGSAQTDSSV---QTKAETGYFQLL 104 (374)
Q Consensus 32 l~~a~tGsGKT~~~~l~~---~~~~~~~lil~P~~~l~~q~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~ 104 (374)
++.||||||||.+|+..+ +..+.++||++|+.+|+.|+.+.+++ ++..+.++++..+..+. +.....+..+|+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IV 80 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVV 80 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEE
Confidence 478999999998876443 45688999999999999999999985 57777777776554432 334445678999
Q ss_pred EEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcc-hHHHHHHHHHHHhcCCCCeeEEEeecCcccHHHHHHhc
Q 037567 105 FMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDF-RLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSL 183 (374)
Q Consensus 105 i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~ 183 (374)
|+|+..+. ..+.++++|||||.|....++... +.....+...+....+.+++++||||+.+.......
T Consensus 81 VGTrsalf---------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~~~-- 149 (505)
T TIGR00595 81 IGTRSALF---------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNAKQ-- 149 (505)
T ss_pred ECChHHHc---------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHhc--
Confidence 99987542 235788999999999876433322 111233455556667899999999988765432211
Q ss_pred CCCCCeE-EEec-c-CCCceeEEEEeecC---CcchHHHHHHHHHHhhcCCCcEEEEecchhH-----------------
Q 037567 184 KLKNPYV-TIAS-F-DRKNLFYGVKVINR---GQSFVDELVQEILKSVAGAGSIIVYCMTIKD----------------- 240 (374)
Q Consensus 184 ~~~~~~~-~~~~-~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~----------------- 240 (374)
+ .... .... . ........+..... .......++..+.+.+..++++|||+|++..
T Consensus 150 g--~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~ 227 (505)
T TIGR00595 150 K--AYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPN 227 (505)
T ss_pred C--CeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCCC
Confidence 1 1111 1100 0 00111111100111 0122345667777777788999999876542
Q ss_pred -------------------------------------------HHHHHHHHHHc--CCceeeeecCCChHHH--HHHHHh
Q 037567 241 -------------------------------------------VEEISKALKQL--GVKAGTYHGQMGSKAR--EEAHRL 273 (374)
Q Consensus 241 -------------------------------------------~~~l~~~l~~~--~~~~~~~~~~~~~~~r--~~~~~~ 273 (374)
.+++.+.|++. +.++..+|++++...+ +.+++.
T Consensus 228 C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~ 307 (505)
T TIGR00595 228 CDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQ 307 (505)
T ss_pred CCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHH
Confidence 57788888875 6788999999876655 889999
Q ss_pred hhcCCeeEEEEeccccccccccCccEEEEECCC--C----------ChhHHHHhhccCCCCCCceEEEEEeeccC
Q 037567 274 FIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCP--K----------TLESYYQESGRCGRDGIASVCWLYYARSN 336 (374)
Q Consensus 274 f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p--~----------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 336 (374)
|.+|+.+|||+|++++.|+|+|+++.|+..+.. . ....+.|++||+||.+.+|.+++.....+
T Consensus 308 f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 308 FANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred HhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCC
Confidence 999999999999999999999999988654432 1 24678999999999999998886544433
No 82
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=1.9e-31 Score=263.87 Aligned_cols=285 Identities=22% Similarity=0.245 Sum_probs=188.9
Q ss_pred HHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcccc----ccCCcEEEEcchHHHHHHHHHHHHHcC--
Q 037567 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL----VTGKTALVVSPLISLMQDQVMSLKQRG-- 77 (374)
Q Consensus 4 ~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~----~~~~~~lil~P~~~l~~q~~~~~~~~~-- 77 (374)
.|.+..|+ +|+++|..+++.++.|+++++.||||+|||.. .+++. .++.+++|++||++|+.|+.+.+..+.
T Consensus 70 ~f~~~~g~-~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f-~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~ 147 (1171)
T TIGR01054 70 FFKKAVGS-EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTF-GLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEK 147 (1171)
T ss_pred HHHHhcCC-CCcHHHHHHHHHHhCCCeEEEECCCCCCHHHH-HHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHh
Confidence 35555555 69999999999999999999999999999973 33332 247889999999999999999988763
Q ss_pred --CceE---EcCCCCCchhh---hhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccC------
Q 037567 78 --INAE---FLGSAQTDSSV---QTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGH------ 143 (374)
Q Consensus 78 --~~~~---~~~~~~~~~~~---~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~------ 143 (374)
+... .++++...... ......+.++|+|+||+++.... ..+. .+++++|+||||.+.+++.
T Consensus 148 ~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~----~~l~-~~~~~iVvDEaD~~L~~~k~vd~il 222 (1171)
T TIGR01054 148 AGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNY----DELG-PKFDFIFVDDVDALLKASKNVDKLL 222 (1171)
T ss_pred cCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHH----HHhc-CCCCEEEEeChHhhhhccccHHHHH
Confidence 2322 23344333222 22233456899999999875432 2222 2789999999999987431
Q ss_pred ---cchHH-HHH-------------------HHHHHHhc-CCCC--eeEEEeecCc-ccHHHHHHhcCCCCCeEEEeccC
Q 037567 144 ---DFRLE-YKQ-------------------LDKLRTFL-LGVP--FVALTATATE-KVRIDIINSLKLKNPYVTIASFD 196 (374)
Q Consensus 144 ---~~~~~-~~~-------------------~~~~~~~~-~~~~--~i~~SaT~~~-~~~~~~~~~~~~~~~~~~~~~~~ 196 (374)
++... +.. +....... ...+ ++++|||..+ .....+...+ ....+......
T Consensus 223 ~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~l--l~~~v~~~~~~ 300 (1171)
T TIGR01054 223 KLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFREL--LGFEVGGGSDT 300 (1171)
T ss_pred HHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccc--cceEecCcccc
Confidence 12111 111 11111122 2233 5678999544 3322121111 01111111111
Q ss_pred CCceeEEEEeecCCcchHHHHHHHHHHhhcCCCcEEEEecch---hHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHh
Q 037567 197 RKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI---KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRL 273 (374)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~---~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 273 (374)
..++..... .. ... ...+.++++.. +.++||||+++ +.++.+++.|++.|+++..+||+++ +..++.
T Consensus 301 ~r~I~~~~~--~~-~~~-~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~ 370 (1171)
T TIGR01054 301 LRNVVDVYV--ED-EDL-KETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYEK 370 (1171)
T ss_pred ccceEEEEE--ec-ccH-HHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHHH
Confidence 222222211 11 111 23345555554 46899999999 9999999999999999999999986 368899
Q ss_pred hhcCCeeEEEEe----ccccccccccC-ccEEEEECCCC
Q 037567 274 FIRDEIRVMVAT----MAFGMGIDKPD-VRHVIHYGCPK 307 (374)
Q Consensus 274 f~~g~~~ilv~t----~~~~~G~d~~~-~~~vi~~~~p~ 307 (374)
|++|+++|||+| +.+.+|+|+|+ +++||+++.|.
T Consensus 371 Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 371 FAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred HHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 999999999995 89999999999 89999999996
No 83
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.6e-31 Score=260.70 Aligned_cols=325 Identities=17% Similarity=0.215 Sum_probs=215.1
Q ss_pred chhHHHHHHHHHcCCCEEEEccCCCCchhhhhcc-c-cc--c--CCcEEEEcch----HHHHHHHHHHHHH-cCCceEEc
Q 037567 15 RPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP-P-LV--T--GKTALVVSPL----ISLMQDQVMSLKQ-RGINAEFL 83 (374)
Q Consensus 15 ~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~-~-~~--~--~~~~lil~P~----~~l~~q~~~~~~~-~~~~~~~~ 83 (374)
+.+-.+++..+.+++.++++|+||||||.. +| + +. . ...+++.-|+ ++++.++.+++.. .|..+++.
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~ 153 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYK 153 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceecee
Confidence 335556666776777788999999999973 33 1 11 1 2345555675 4777777777763 34333221
Q ss_pred CCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccch-hhcccCcchHHHHHHHHHHHhcCCC
Q 037567 84 GSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHC-ISEWGHDFRLEYKQLDKLRTFLLGV 162 (374)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~-~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (374)
. ... ......+.|+++||+.|...+.. ...+.++++|||||||. ..+.++. ...+..+....++.
T Consensus 154 v----rf~---~~~s~~t~I~v~TpG~LL~~l~~---d~~Ls~~~~IIIDEAHERsLn~DfL----Lg~Lk~lL~~rpdl 219 (1294)
T PRK11131 154 V----RFN---DQVSDNTMVKLMTDGILLAEIQQ---DRLLMQYDTIIIDEAHERSLNIDFI----LGYLKELLPRRPDL 219 (1294)
T ss_pred e----cCc---cccCCCCCEEEEChHHHHHHHhc---CCccccCcEEEecCccccccccchH----HHHHHHhhhcCCCc
Confidence 1 111 11124579999999998876543 23478899999999994 4443322 23445555545678
Q ss_pred CeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEEEeecCC-----cchHHHHHHHHHHh-hcCCCcEEEEec
Q 037567 163 PFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRG-----QSFVDELVQEILKS-VAGAGSIIVYCM 236 (374)
Q Consensus 163 ~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~lVf~~ 236 (374)
++|+||||++.. .+...++ ..+.+....... .+...+...... ......++..+... ....+++|||++
T Consensus 220 KvILmSATid~e---~fs~~F~-~apvI~V~Gr~~-pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLp 294 (1294)
T PRK11131 220 KVIITSATIDPE---RFSRHFN-NAPIIEVSGRTY-PVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMS 294 (1294)
T ss_pred eEEEeeCCCCHH---HHHHHcC-CCCEEEEcCccc-cceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcC
Confidence 999999999753 3444443 233333322111 111111111111 11222222222111 135688999999
Q ss_pred chhHHHHHHHHHHHcCCc---eeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECC--------
Q 037567 237 TIKDVEEISKALKQLGVK---AGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGC-------- 305 (374)
Q Consensus 237 ~~~~~~~l~~~l~~~~~~---~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~-------- 305 (374)
+..+++.+++.|.+.+.+ +..+||+++.+++..+++. .|..+|+|||+++++|+|+|++++||+++.
T Consensus 295 g~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~ 372 (1294)
T PRK11131 295 GEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSY 372 (1294)
T ss_pred CHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcccccccc
Confidence 999999999999987664 6789999999999999876 477899999999999999999999999863
Q ss_pred -------C---CChhHHHHhhccCCCCCCceEEEEEeeccCCCcccceeccccchHHHHHHHHHHHHHHHH
Q 037567 306 -------P---KTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLLAAQRY 366 (374)
Q Consensus 306 -------p---~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 366 (374)
| .|..++.||.||+||. .+|.||.+|+++++.... ....++..+..+...+.+|..+
T Consensus 373 ~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~~~~---~~~~PEIlR~~L~~viL~lk~l 439 (1294)
T PRK11131 373 RTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLSRP---EFTDPEILRTNLASVILQMTAL 439 (1294)
T ss_pred ccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHHhhh---cccCCccccCCHHHHHHHHHHc
Confidence 2 3568999999999999 699999999998876543 3355666666666666666554
No 84
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.98 E-value=3.8e-33 Score=219.96 Aligned_cols=288 Identities=17% Similarity=0.261 Sum_probs=206.8
Q ss_pred hHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcccccc------CCcEEEEcchHHHHHHHHHHHHHc
Q 037567 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVT------GKTALVVSPLISLMQDQVMSLKQR 76 (374)
Q Consensus 3 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~------~~~~lil~P~~~l~~q~~~~~~~~ 76 (374)
+++-. -||++|.+.|-+++|+..-|-++++.|..|.|||..|.++.+++ .-.++++|.+|+|+-|...++.++
T Consensus 55 raivd-cgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rf 133 (387)
T KOG0329|consen 55 RAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERF 133 (387)
T ss_pred HHHHh-ccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHH
Confidence 44445 69999999999999999999999999999999999998888764 446899999999999999888765
Q ss_pred -----CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHH
Q 037567 77 -----GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQ 151 (374)
Q Consensus 77 -----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~ 151 (374)
+.++.++.++......... ....|+|+|+||+++..+.+. ..+.+.++..+|+|||+.+.+ ..+++. -
T Consensus 134 skymP~vkvaVFfGG~~Ikkdee~-lk~~PhivVgTPGrilALvr~--k~l~lk~vkhFvlDEcdkmle-~lDMrR---D 206 (387)
T KOG0329|consen 134 SKYMPSVKVSVFFGGLFIKKDEEL-LKNCPHIVVGTPGRILALVRN--RSLNLKNVKHFVLDECDKMLE-QLDMRR---D 206 (387)
T ss_pred HhhCCCceEEEEEcceeccccHHH-HhCCCeEEEcCcHHHHHHHHh--ccCchhhcceeehhhHHHHHH-HHHHHH---H
Confidence 4555666666554443333 333899999999999888666 667788999999999998876 233332 2
Q ss_pred HHHHHH-hcCCCCeeEEEeecCcccHHHHHHhcCCCCCe-EEEeccCCCceeE-EEEeecCCcchHHHHHHHHHHhhcCC
Q 037567 152 LDKLRT-FLLGVPFVALTATATEKVRIDIINSLKLKNPY-VTIASFDRKNLFY-GVKVINRGQSFVDELVQEILKSVAGA 228 (374)
Q Consensus 152 ~~~~~~-~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (374)
+.++.. ..+..+++.||||.+.+..+ ++..+ +.+|. +.........+.- ......-.......-+.+++..+ ..
T Consensus 207 vQEifr~tp~~KQvmmfsatlskeiRp-vC~kF-mQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~L-eF 283 (387)
T KOG0329|consen 207 VQEIFRMTPHEKQVMMFSATLSKEIRP-VCHKF-MQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVL-EF 283 (387)
T ss_pred HHHHhhcCcccceeeeeeeecchhhHH-HHHhh-hcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhh-hh
Confidence 333332 33468899999999998764 33333 23332 2222211111100 00011111222233344444444 56
Q ss_pred CcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCCC
Q 037567 229 GSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKT 308 (374)
Q Consensus 229 ~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s 308 (374)
++++||+.+..... | ..+ +|+|+..++|+|+..++.+++|+.|.+
T Consensus 284 NQVvIFvKsv~Rl~-------------------------------f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~ 328 (387)
T KOG0329|consen 284 NQVVIFVKSVQRLS-------------------------------F---QKR-LVATDLFGRGMDIERVNIVFNYDMPED 328 (387)
T ss_pred cceeEeeehhhhhh-------------------------------h---hhh-hHHhhhhccccCcccceeeeccCCCCC
Confidence 78999998876510 2 123 899999999999999999999999999
Q ss_pred hhHHHHhhccCCCCCCceEEEEEeeccC
Q 037567 309 LESYYQESGRCGRDGIASVCWLYYARSN 336 (374)
Q Consensus 309 ~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 336 (374)
.++|.||.|||||.|..|.++.+++..+
T Consensus 329 ~DtYlHrv~rAgrfGtkglaitfvs~e~ 356 (387)
T KOG0329|consen 329 SDTYLHRVARAGRFGTKGLAITFVSDEN 356 (387)
T ss_pred chHHHHHhhhhhccccccceeehhcchh
Confidence 9999999999999999999999988754
No 85
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.98 E-value=3.9e-31 Score=248.25 Aligned_cols=337 Identities=20% Similarity=0.228 Sum_probs=242.5
Q ss_pred HcCCCCCchhHHHHHHHHHcC-CCEEEEccCCCCchhhhhcccccc--------------CCcEEEEcchHHHHHHHHHH
Q 037567 8 YFGYSVFRPYQKDVIQRIIEK-RDCLVVMATGSGKSLCYQLPPLVT--------------GKTALVVSPLISLMQDQVMS 72 (374)
Q Consensus 8 ~~~~~~~~~~Q~~~~~~~~~~-~~~l~~a~tGsGKT~~~~l~~~~~--------------~~~~lil~P~~~l~~q~~~~ 72 (374)
.+|..++.++|+...++.+.+ .+++++||||+|||..+++.++++ ..++.+++|.++|++.|...
T Consensus 304 F~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vgs 383 (1674)
T KOG0951|consen 304 FFGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGS 383 (1674)
T ss_pred cccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHH
Confidence 467788999999999988875 588999999999999999888852 45899999999999999987
Q ss_pred HHH----cCCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchh-hcccCcchH
Q 037567 73 LKQ----RGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCI-SEWGHDFRL 147 (374)
Q Consensus 73 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~-~~~~~~~~~ 147 (374)
+.+ +|+.+.-.++......... ....++|+|||+...+.+...+....+-++++|+||.|.+ .+.|.-...
T Consensus 384 fSkRla~~GI~V~ElTgD~~l~~~qi----eeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLES 459 (1674)
T KOG0951|consen 384 FSKRLAPLGITVLELTGDSQLGKEQI----EETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLES 459 (1674)
T ss_pred HHhhccccCcEEEEecccccchhhhh----hcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHH
Confidence 764 5777776666544333222 2358999999998666555444555567789999999998 445654433
Q ss_pred HHHHHHHHH-HhcCCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEEEee--cCCcchH------HHHH
Q 037567 148 EYKQLDKLR-TFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVI--NRGQSFV------DELV 218 (374)
Q Consensus 148 ~~~~~~~~~-~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------~~~~ 218 (374)
...+..+-. ..-...+.+++|||+++.. +...++...++................+++ ..+.... +...
T Consensus 460 IVaRt~r~ses~~e~~RlVGLSATLPNy~--DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~y 537 (1674)
T KOG0951|consen 460 IVARTFRRSESTEEGSRLVGLSATLPNYE--DVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACY 537 (1674)
T ss_pred HHHHHHHHhhhcccCceeeeecccCCchh--hhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHH
Confidence 333333222 2223688999999999876 557777777665555533333333333322 2211111 2334
Q ss_pred HHHHHhhcCCCcEEEEecchhHHHHHHHHHHHc-------------------------------------CCceeeeecC
Q 037567 219 QEILKSVAGAGSIIVYCMTIKDVEEISKALKQL-------------------------------------GVKAGTYHGQ 261 (374)
Q Consensus 219 ~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~-------------------------------------~~~~~~~~~~ 261 (374)
..++++. .++++|||+.++++..+.++.++.. .+..+++|.+
T Consensus 538 eKVm~~a-gk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAG 616 (1674)
T KOG0951|consen 538 EKVLEHA-GKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAG 616 (1674)
T ss_pred HHHHHhC-CCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccC
Confidence 4455554 4589999999999888888777621 3446789999
Q ss_pred CChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEE----EECC------CCChhHHHHhhccCCCCCC--ceEEE
Q 037567 262 MGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI----HYGC------PKTLESYYQESGRCGRDGI--ASVCW 329 (374)
Q Consensus 262 ~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi----~~~~------p~s~~~~~Q~~GR~~R~~~--~g~~~ 329 (374)
++..+|......|.+|.++++++|..+..|+|+|.-+++| .+++ +.++.+.+||.||+||.+- .|-.+
T Consensus 617 l~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegi 696 (1674)
T KOG0951|consen 617 LNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGI 696 (1674)
T ss_pred CCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCcee
Confidence 9999999999999999999999999999999999777666 2222 3489999999999999753 45667
Q ss_pred EEeeccCCCcccceeccccchH
Q 037567 330 LYYARSNFAKGDFYCGESQTEN 351 (374)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~ 351 (374)
+.....++...-.++++..+.+
T Consensus 697 iit~~se~qyyls~mn~qLpie 718 (1674)
T KOG0951|consen 697 IITDHSELQYYLSLMNQQLPIE 718 (1674)
T ss_pred eccCchHhhhhHHhhhhcCCCh
Confidence 7777777777666666555543
No 86
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=6.2e-30 Score=244.65 Aligned_cols=309 Identities=17% Similarity=0.181 Sum_probs=197.9
Q ss_pred cCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc-----cCCcEEEEcchHHHHHHHHHHHHH-----cC-
Q 037567 9 FGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV-----TGKTALVVSPLISLMQDQVMSLKQ-----RG- 77 (374)
Q Consensus 9 ~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~-----~~~~~lil~P~~~l~~q~~~~~~~-----~~- 77 (374)
++..+|+|+|..+.........+++.||||+|||.+++..+.. ...++++..||+++++++++.+.+ ++
T Consensus 282 ~~~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~ 361 (878)
T PRK09694 282 DNGYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPS 361 (878)
T ss_pred cCCCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCC
Confidence 4445799999988654334566899999999999887655432 246899999999999999998864 22
Q ss_pred CceEEcCCCCCchh-----------------------hhhh-hhc--CCeeEEEEcCcccccCchhh-HH--HHHhcCcc
Q 037567 78 INAEFLGSAQTDSS-----------------------VQTK-AET--GYFQLLFMTPEKACIIPISF-WS--KLLKAGVC 128 (374)
Q Consensus 78 ~~~~~~~~~~~~~~-----------------------~~~~-~~~--~~~~i~i~T~~~l~~~~~~~-~~--~~~~~~~~ 128 (374)
..+.+.++...... .+.. ..+ --..|+|+|.+++....-.. .. +...-.-+
T Consensus 362 ~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~s 441 (878)
T PRK09694 362 PNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRS 441 (878)
T ss_pred CceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccC
Confidence 23444443221100 0000 000 01489999999876322111 01 11112235
Q ss_pred EEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCeeEEEeecCcccHHHHHHhcCCCC--------CeEEEec------
Q 037567 129 LFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLKN--------PYVTIAS------ 194 (374)
Q Consensus 129 ~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~--------~~~~~~~------ 194 (374)
+|||||+|.+... +...+..+-+.... ...++|+||||++......+...++... +.+....
T Consensus 442 vvIiDEVHAyD~y---m~~lL~~~L~~l~~-~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~ 517 (878)
T PRK09694 442 VLIVDEVHAYDAY---MYGLLEAVLKAQAQ-AGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQR 517 (878)
T ss_pred eEEEechhhCCHH---HHHHHHHHHHHHHh-cCCcEEEEeCCCCHHHHHHHHHHhcccccccccccccccccccccccee
Confidence 8999999987432 11111222222111 2578999999999887766665443210 1110000
Q ss_pred c--C------CCceeEEEEeec-CCcchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcC---CceeeeecCC
Q 037567 195 F--D------RKNLFYGVKVIN-RGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLG---VKAGTYHGQM 262 (374)
Q Consensus 195 ~--~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~---~~~~~~~~~~ 262 (374)
. . .......+.... ........++..+.+....+++++||||+++.++.+++.|++.+ .++..+||++
T Consensus 518 ~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf 597 (878)
T PRK09694 518 FDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARF 597 (878)
T ss_pred eeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCC
Confidence 0 0 000111111111 11112245666666666678999999999999999999999764 5789999999
Q ss_pred ChHHHH----HHHHhh-hcCC---eeEEEEeccccccccccCccEEEEECCCCChhHHHHhhccCCCCCC
Q 037567 263 GSKARE----EAHRLF-IRDE---IRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGI 324 (374)
Q Consensus 263 ~~~~r~----~~~~~f-~~g~---~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~ 324 (374)
+..+|. ++++.| ++|+ ..|||+|++++.|+|+ +++++|....| .+.++||+||++|.+.
T Consensus 598 ~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 598 TLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 999984 567778 5555 4799999999999999 58988887777 7899999999999875
No 87
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=2.7e-30 Score=253.02 Aligned_cols=326 Identities=15% Similarity=0.178 Sum_probs=215.3
Q ss_pred HHHHHHHHcCCCEEEEccCCCCchhhhhccccc----cCCcEEEEcchHHHHHHHHHHHHH-cCCceEEcCCCCCchhhh
Q 037567 19 KDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV----TGKTALVVSPLISLMQDQVMSLKQ-RGINAEFLGSAQTDSSVQ 93 (374)
Q Consensus 19 ~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~----~~~~~lil~P~~~l~~q~~~~~~~-~~~~~~~~~~~~~~~~~~ 93 (374)
.+++..+.++..++++|+||||||...-..++. ...++++.-|++-.+..+...+.. +|..+....+.....+.
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~~~- 151 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRFHD- 151 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcCCc-
Confidence 456666667778899999999999642111221 234677788988777777766543 45544332222111111
Q ss_pred hhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccch-hhcccCcchHHHHHHHHHHHhcCCCCeeEEEeecC
Q 037567 94 TKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHC-ISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATAT 172 (374)
Q Consensus 94 ~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 172 (374)
.......|.++|++.|...+.. ...+.++++|||||+|. ..+.+ .....+..+....++.++|+||||+.
T Consensus 152 --~~s~~T~I~~~TdGiLLr~l~~---d~~L~~~~~IIIDEaHERsL~~D----~LL~lLk~il~~rpdLKlIlmSATld 222 (1283)
T TIGR01967 152 --QVSSNTLVKLMTDGILLAETQQ---DRFLSRYDTIIIDEAHERSLNID----FLLGYLKQLLPRRPDLKIIITSATID 222 (1283)
T ss_pred --ccCCCceeeeccccHHHHHhhh---CcccccCcEEEEcCcchhhccch----hHHHHHHHHHhhCCCCeEEEEeCCcC
Confidence 1123468999999998765443 23468899999999994 44322 22234555555567889999999997
Q ss_pred cccHHHHHHhcCCCCCeEEEeccCCCceeEEEEeecC-C----cchHH---HHHHHHHHhhcCCCcEEEEecchhHHHHH
Q 037567 173 EKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINR-G----QSFVD---ELVQEILKSVAGAGSIIVYCMTIKDVEEI 244 (374)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~---~~~~~~~~~~~~~~~~lVf~~~~~~~~~l 244 (374)
.. .+...++. .+.+....... .+...+..... . ..... +.+..+... ..+++|||+++..+++.+
T Consensus 223 ~~---~fa~~F~~-apvI~V~Gr~~-PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~--~~GdILVFLpg~~EI~~l 295 (1283)
T TIGR01967 223 PE---RFSRHFNN-APIIEVSGRTY-PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAE--GPGDILIFLPGEREIRDA 295 (1283)
T ss_pred HH---HHHHHhcC-CCEEEECCCcc-cceeEEecccccccchhhhHHHHHHHHHHHHHhh--CCCCEEEeCCCHHHHHHH
Confidence 53 34554432 33333322111 11111111111 0 01112 222332222 468999999999999999
Q ss_pred HHHHHHcC---CceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCC---------------
Q 037567 245 SKALKQLG---VKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCP--------------- 306 (374)
Q Consensus 245 ~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p--------------- 306 (374)
++.|.+.+ ..+..+||+++.+++..++..+ +..+|+++|+++++|+|+|++++||+++.+
T Consensus 296 ~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~ 373 (1283)
T TIGR01967 296 AEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLP 373 (1283)
T ss_pred HHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccC
Confidence 99998864 3478899999999999986654 246899999999999999999999998853
Q ss_pred ---CChhHHHHhhccCCCCCCceEEEEEeeccCCCcccceeccccchHHHHHHHHHHHHHHHHh
Q 037567 307 ---KTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLLAAQRYC 367 (374)
Q Consensus 307 ---~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 367 (374)
.|..++.||.||+||.+ +|.||.+|+.+++.... ....++..+..+..-+.+|..+.
T Consensus 374 ~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~~~---~~~~PEIlR~~L~~viL~l~~lg 433 (1283)
T TIGR01967 374 IEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNSRP---EFTDPEILRTNLASVILQMLALR 433 (1283)
T ss_pred CccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHhhh---hccCcccccccHHHHHHHHHhcC
Confidence 36689999999999997 99999999998876543 33466666666666666666553
No 88
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.97 E-value=1e-29 Score=249.88 Aligned_cols=305 Identities=18% Similarity=0.203 Sum_probs=191.5
Q ss_pred CCchhHHHHHHHHHc-----CCCEEEEccCCCCchhhhhcccc---c--cCCcEEEEcchHHHHHHHHHHHHHcCCceEE
Q 037567 13 VFRPYQKDVIQRIIE-----KRDCLVVMATGSGKSLCYQLPPL---V--TGKTALVVSPLISLMQDQVMSLKQRGINAEF 82 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~-----~~~~l~~a~tGsGKT~~~~l~~~---~--~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 82 (374)
.+|+||.+|+.++.+ .+++++++|||||||.+++..+. . ..+++|+++|+.+|+.|+...|..++.....
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~ 492 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGDQ 492 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhccccccc
Confidence 589999999988763 35789999999999977543221 1 3478999999999999999999987653321
Q ss_pred -cCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhH---HHHHhcCccEEEEeccchhhccc-------Ccc---hHH
Q 037567 83 -LGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFW---SKLLKAGVCLFAVDEAHCISEWG-------HDF---RLE 148 (374)
Q Consensus 83 -~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~---~~~~~~~~~~vviDE~h~~~~~~-------~~~---~~~ 148 (374)
+...................|+|+|++++........ .......+++||+||||+..... ..+ ...
T Consensus 493 ~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~ 572 (1123)
T PRK11448 493 TFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLDY 572 (1123)
T ss_pred chhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchhhhH
Confidence 1110000100111122345899999998754321110 11234678899999999853100 000 111
Q ss_pred HHHHHHHHHhcCCCCeeEEEeecCcccHHHHHHhcCC----------------C---CCeEEEeccCCCceeEE------
Q 037567 149 YKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKL----------------K---NPYVTIASFDRKNLFYG------ 203 (374)
Q Consensus 149 ~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~----------------~---~~~~~~~~~~~~~~~~~------ 203 (374)
+..+..+...+ +...|+|||||..... ..++. . ++..+........+...
T Consensus 573 ~~~yr~iL~yF-dA~~IGLTATP~r~t~----~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~ 647 (1123)
T PRK11448 573 VSKYRRVLDYF-DAVKIGLTATPALHTT----EIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEVE 647 (1123)
T ss_pred HHHHHHHHhhc-CccEEEEecCCccchh----HHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchhh
Confidence 34455555544 5689999999985432 11221 0 11111111000000000
Q ss_pred --------E--EeecCC--------------cchHHHHHHHHHHhh--cCCCcEEEEecchhHHHHHHHHHHHc------
Q 037567 204 --------V--KVINRG--------------QSFVDELVQEILKSV--AGAGSIIVYCMTIKDVEEISKALKQL------ 251 (374)
Q Consensus 204 --------~--~~~~~~--------------~~~~~~~~~~~~~~~--~~~~~~lVf~~~~~~~~~l~~~l~~~------ 251 (374)
. ...... ......++.++.+.. ...+|+||||.+..+|+.+++.|.+.
T Consensus 648 ~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~ 727 (1123)
T PRK11448 648 VINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYG 727 (1123)
T ss_pred hcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcC
Confidence 0 000000 000011122232222 13479999999999999999887763
Q ss_pred CC---ceeeeecCCChHHHHHHHHhhhcCCe-eEEEEeccccccccccCccEEEEECCCCChhHHHHhhccCCCCCC
Q 037567 252 GV---KAGTYHGQMGSKAREEAHRLFIRDEI-RVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGI 324 (374)
Q Consensus 252 ~~---~~~~~~~~~~~~~r~~~~~~f~~g~~-~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~ 324 (374)
+. .+..++|+.+ ++..++++|++++. .|+|+++++.+|+|+|.+.+|+++.++.|...|+||+||+.|...
T Consensus 728 ~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 728 QVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred CcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCc
Confidence 12 3456888764 56789999999876 689999999999999999999999999999999999999999754
No 89
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.97 E-value=6.5e-29 Score=204.34 Aligned_cols=321 Identities=18% Similarity=0.184 Sum_probs=217.4
Q ss_pred CCchhHHHHHHHHHc----CCCEEEEccCCCCchhhh---hccccccCCcEEEEcchHHHHHHHHHHHHHc--CCceEEc
Q 037567 13 VFRPYQKDVIQRIIE----KRDCLVVMATGSGKSLCY---QLPPLVTGKTALVVSPLISLMQDQVMSLKQR--GINAEFL 83 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~----~~~~l~~a~tGsGKT~~~---~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~--~~~~~~~ 83 (374)
+++|.|+.+.+++.+ .++.+++|-||+|||-.. +-.++.++.++.+.+|+.+.+.+.+..+++. +..+..+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~L 176 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLL 176 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeE
Confidence 689999999887764 689999999999999543 2345668999999999999999999999864 3566666
Q ss_pred CCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCC
Q 037567 84 GSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVP 163 (374)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (374)
+++...... ..++|+|..+|.++ ...++++||||+|.+.- ..+.. .....-........
T Consensus 177 yg~S~~~fr--------~plvVaTtHQLlrF---------k~aFD~liIDEVDAFP~-~~d~~---L~~Av~~ark~~g~ 235 (441)
T COG4098 177 YGDSDSYFR--------APLVVATTHQLLRF---------KQAFDLLIIDEVDAFPF-SDDQS---LQYAVKKARKKEGA 235 (441)
T ss_pred ecCCchhcc--------ccEEEEehHHHHHH---------HhhccEEEEeccccccc-cCCHH---HHHHHHHhhcccCc
Confidence 665444332 26888888877543 24568999999997642 11111 11222222334678
Q ss_pred eeEEEeecCcccHHHHHHhcCCCCCeEEEecc-CCCceeEEEEeecCCcch-----H-HHHHHHHHHhhcCCCcEEEEec
Q 037567 164 FVALTATATEKVRIDIINSLKLKNPYVTIASF-DRKNLFYGVKVINRGQSF-----V-DELVQEILKSVAGAGSIIVYCM 236 (374)
Q Consensus 164 ~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~lVf~~ 236 (374)
.|++|||++.....++...-. ......... ..+-....+.....-... + ..+...+.+....+.+++||++
T Consensus 236 ~IylTATp~k~l~r~~~~g~~--~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p 313 (441)
T COG4098 236 TIYLTATPTKKLERKILKGNL--RILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFP 313 (441)
T ss_pred eEEEecCChHHHHHHhhhCCe--eEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEec
Confidence 999999999876544333110 000000111 111111111111111111 1 2334444444556789999999
Q ss_pred chhHHHHHHHHHHHc--CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECC--CCChhHH
Q 037567 237 TIKDVEEISKALKQL--GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGC--PKTLESY 312 (374)
Q Consensus 237 ~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~--p~s~~~~ 312 (374)
+.+..++++..|++. ...+..+|+. +..|.+..+.|++|++++|++|.++++|+.+|++++.+.-.- ..+...+
T Consensus 314 ~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaL 391 (441)
T COG4098 314 EIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESAL 391 (441)
T ss_pred chHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHH
Confidence 999999999999653 2345778876 667888999999999999999999999999999999775432 3578999
Q ss_pred HHhhccCCCCCC--ceEEEEEeeccCCCcccceeccccchHHHHHHHHHHHHHHHHhhhccc
Q 037567 313 YQESGRCGRDGI--ASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLLAAQRYCLLTTC 372 (374)
Q Consensus 313 ~Q~~GR~~R~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 372 (374)
+|..||+||.-. .|.+.. +.. .....+....+++++|++..-+..|
T Consensus 392 VQIaGRvGRs~~~PtGdv~F-FH~-------------G~skaM~~A~keIk~MN~lg~k~~~ 439 (441)
T COG4098 392 VQIAGRVGRSLERPTGDVLF-FHY-------------GKSKAMKQARKEIKEMNKLGFKRGL 439 (441)
T ss_pred HHHhhhccCCCcCCCCcEEE-Eec-------------cchHHHHHHHHHHHHHHHHhhhccc
Confidence 999999999743 444433 332 3455677788899999988766554
No 90
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.97 E-value=7.7e-29 Score=239.45 Aligned_cols=307 Identities=17% Similarity=0.145 Sum_probs=210.9
Q ss_pred CCchhHHHHHHHHH----cCCCEEEEccCCCCchhhhhccc--cc----cCCcEEEEcchHHHHHHHHHHHHHcCCce--
Q 037567 13 VFRPYQKDVIQRII----EKRDCLVVMATGSGKSLCYQLPP--LV----TGKTALVVSPLISLMQDQVMSLKQRGINA-- 80 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~----~~~~~l~~a~tGsGKT~~~~l~~--~~----~~~~~lil~P~~~l~~q~~~~~~~~~~~~-- 80 (374)
.++|||.+++..+. .+.++|+...+|.|||+..+..+ +. ...++|||||. ++..||.+++.++....
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p~l~v 247 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCPVLRA 247 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCCCCce
Confidence 68999999998875 46788999999999997543322 21 24679999998 67888999999885433
Q ss_pred EEcCCCCCchhh--hhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHh
Q 037567 81 EFLGSAQTDSSV--QTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTF 158 (374)
Q Consensus 81 ~~~~~~~~~~~~--~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~ 158 (374)
..+.+....... ......+.++|+|+|++.+... ...+...++++||+||+|.+.+.. .........
T Consensus 248 ~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e----~~~L~k~~W~~VIvDEAHrIKN~~-------Sklskalr~ 316 (1033)
T PLN03142 248 VKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKE----KTALKRFSWRYIIIDEAHRIKNEN-------SLLSKTMRL 316 (1033)
T ss_pred EEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHH----HHHhccCCCCEEEEcCccccCCHH-------HHHHHHHHH
Confidence 333332222111 1112345689999999986432 233344578999999999997644 223334444
Q ss_pred cCCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEec---------------------------------------cCCC-
Q 037567 159 LLGVPFVALTATATEKVRIDIINSLKLKNPYVTIAS---------------------------------------FDRK- 198 (374)
Q Consensus 159 ~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~- 198 (374)
+.....+++||||..+...++...+.+..+...... ...+
T Consensus 317 L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPp 396 (1033)
T PLN03142 317 FSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 396 (1033)
T ss_pred hhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCC
Confidence 456678999999988766655554433222111000 0000
Q ss_pred ceeEEEEeecC------------------------------------------------------------CcchHHHHH
Q 037567 199 NLFYGVKVINR------------------------------------------------------------GQSFVDELV 218 (374)
Q Consensus 199 ~~~~~~~~~~~------------------------------------------------------------~~~~~~~~~ 218 (374)
.....+.+... .......++
T Consensus 397 K~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lL 476 (1033)
T PLN03142 397 KKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLL 476 (1033)
T ss_pred ceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHH
Confidence 00000000000 000111222
Q ss_pred HHHHHhh-cCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcC---CeeEEEEeccccccccc
Q 037567 219 QEILKSV-AGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRD---EIRVMVATMAFGMGIDK 294 (374)
Q Consensus 219 ~~~~~~~-~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g---~~~ilv~t~~~~~G~d~ 294 (374)
..++..+ ..+.++|||+.....+..+.+.|...++....++|+++..+|+..++.|+.. ...+|++|.+.+.|+|+
T Consensus 477 dkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINL 556 (1033)
T PLN03142 477 DKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINL 556 (1033)
T ss_pred HHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCch
Confidence 3333322 3467999999999999999999999999999999999999999999999863 34578899999999999
Q ss_pred cCccEEEEECCCCChhHHHHhhccCCCCCCceEEEEE
Q 037567 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLY 331 (374)
Q Consensus 295 ~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~ 331 (374)
..+++||+++++||+....|++||+.|.||...|.++
T Consensus 557 t~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~Vy 593 (1033)
T PLN03142 557 ATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVF 593 (1033)
T ss_pred hhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEE
Confidence 9999999999999999999999999999998766544
No 91
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=4.5e-29 Score=229.12 Aligned_cols=314 Identities=19% Similarity=0.261 Sum_probs=222.2
Q ss_pred ChhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcccc---ccCCcEEEEcchHHHHHHHHHHHHHcC
Q 037567 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL---VTGKTALVVSPLISLMQDQVMSLKQRG 77 (374)
Q Consensus 1 l~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~---~~~~~~lil~P~~~l~~q~~~~~~~~~ 77 (374)
+|......++|. +..+|.+|+-++.+|.++++.|+|.+|||+.+.-++. .+.-++++.+|-++|-+|.+++|+..-
T Consensus 286 lVpe~a~~~pFe-lD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF 364 (1248)
T KOG0947|consen 286 LVPEMALIYPFE-LDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETF 364 (1248)
T ss_pred hchhHHhhCCCC-ccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhc
Confidence 355666678995 9999999999999999999999999999987644332 257789999999999999999999764
Q ss_pred CceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHH-
Q 037567 78 INAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR- 156 (374)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~- 156 (374)
-.+.+++++..... ....+|+|.|-|.+++++ +.-....++.||+||+|.+.+.... -.|.++.
T Consensus 365 ~DvgLlTGDvqinP--------eAsCLIMTTEILRsMLYr--gadliRDvE~VIFDEVHYiND~eRG-----vVWEEViI 429 (1248)
T KOG0947|consen 365 GDVGLLTGDVQINP--------EASCLIMTTEILRSMLYR--GADLIRDVEFVIFDEVHYINDVERG-----VVWEEVII 429 (1248)
T ss_pred cccceeecceeeCC--------CcceEeehHHHHHHHHhc--ccchhhccceEEEeeeeeccccccc-----ccceeeee
Confidence 55556666543322 236899999988887776 4445567899999999999764333 2233322
Q ss_pred HhcCCCCeeEEEeecCcccHHHHHHhcCCCCCe-EEEeccCCCceeEEEEeecC--------------------------
Q 037567 157 TFLLGVPFVALTATATEKVRIDIINSLKLKNPY-VTIASFDRKNLFYGVKVINR-------------------------- 209 (374)
Q Consensus 157 ~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------------------------- 209 (374)
-..++.++|++|||.++.. ++..|.|..... +.+.+.....+......+..
T Consensus 430 MlP~HV~~IlLSATVPN~~--EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~ 507 (1248)
T KOG0947|consen 430 MLPRHVNFILLSATVPNTL--EFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLK 507 (1248)
T ss_pred eccccceEEEEeccCCChH--HHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhc
Confidence 2334789999999999877 568887754322 22222211111111100000
Q ss_pred ------------------------------C----------c---chHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHH
Q 037567 210 ------------------------------G----------Q---SFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISK 246 (374)
Q Consensus 210 ------------------------------~----------~---~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~ 246 (374)
. . ....+++..+.++ +--+++|||-+++.|+..++
T Consensus 508 ~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~--~lLP~VvFvFSkkrCde~a~ 585 (1248)
T KOG0947|consen 508 KEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKK--NLLPVVVFVFSKKRCDEYAD 585 (1248)
T ss_pred ccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhc--ccCceEEEEEccccHHHHHH
Confidence 0 0 0123333333322 34579999999999999998
Q ss_pred HHHHcC---------------------------------------CceeeeecCCChHHHHHHHHhhhcCCeeEEEEecc
Q 037567 247 ALKQLG---------------------------------------VKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMA 287 (374)
Q Consensus 247 ~l~~~~---------------------------------------~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~ 287 (374)
.|.... -.++.+||++-+--++-+.-.|+.|-++||++|..
T Consensus 586 ~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATET 665 (1248)
T KOG0947|consen 586 YLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATET 665 (1248)
T ss_pred HHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhh
Confidence 885431 12467899999989999999999999999999999
Q ss_pred ccccccccCccEEEEECCC---------CChhHHHHhhccCCCCCC--ceEEEEEeecc
Q 037567 288 FGMGIDKPDVRHVIHYGCP---------KTLESYYQESGRCGRDGI--ASVCWLYYARS 335 (374)
Q Consensus 288 ~~~G~d~~~~~~vi~~~~p---------~s~~~~~Q~~GR~~R~~~--~g~~~~~~~~~ 335 (374)
..+|+|.|.-.+|+ .+.. -.+.+|.||.|||||.|- .|+++++....
T Consensus 666 FAMGVNMPARtvVF-~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 666 FAMGVNMPARTVVF-SSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred hhhhcCCCceeEEe-eehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 99999999655554 4333 268999999999999885 57777766554
No 92
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=2.1e-27 Score=223.07 Aligned_cols=322 Identities=17% Similarity=0.142 Sum_probs=217.1
Q ss_pred hHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc---cCCcEEEEcchHHHHHHHHHHHHHc---
Q 037567 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV---TGKTALVVSPLISLMQDQVMSLKQR--- 76 (374)
Q Consensus 3 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~---~~~~~lil~P~~~l~~q~~~~~~~~--- 76 (374)
++-++.+|.. +++.|.-+--.+.+|+ +..++||+|||+++.+|++. .+..++|++|++.||.|.++++..+
T Consensus 73 Ea~~R~lg~~-~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~~~ 149 (896)
T PRK13104 73 EVSLRTLGLR-HFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIYEF 149 (896)
T ss_pred HHHHHHcCCC-cchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHhcc
Confidence 4556667764 6676666655555554 99999999999999988774 4678999999999999998888764
Q ss_pred -CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCccc-ccCchhhH----HHHHhcCccEEEEeccchhh-cc--------
Q 037567 77 -GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKA-CIIPISFW----SKLLKAGVCLFAVDEAHCIS-EW-------- 141 (374)
Q Consensus 77 -~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l-~~~~~~~~----~~~~~~~~~~vviDE~h~~~-~~-------- 141 (374)
|+.+.++.++....... ....++|+++||+.| .++++... .......+.++|+||+|.+. +.
T Consensus 150 lGLtv~~i~gg~~~~~r~---~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIIS 226 (896)
T PRK13104 150 LGLTVGVIYPDMSHKEKQ---EAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIIS 226 (896)
T ss_pred cCceEEEEeCCCCHHHHH---HHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeee
Confidence 67777776654433322 223579999999998 55544321 11223578999999999985 11
Q ss_pred c--CcchHHHHHHHHHHHhcC---------------CCCeeEEEee----------------------------------
Q 037567 142 G--HDFRLEYKQLDKLRTFLL---------------GVPFVALTAT---------------------------------- 170 (374)
Q Consensus 142 ~--~~~~~~~~~~~~~~~~~~---------------~~~~i~~SaT---------------------------------- 170 (374)
| ......+.....+...+. ..+.+.+|..
T Consensus 227 g~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~ 306 (896)
T PRK13104 227 GAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVN 306 (896)
T ss_pred CCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHH
Confidence 0 011111111111111110 1223434332
Q ss_pred --------------------------------------------------------------------------------
Q 037567 171 -------------------------------------------------------------------------------- 170 (374)
Q Consensus 171 -------------------------------------------------------------------------------- 170 (374)
T Consensus 307 ~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMT 386 (896)
T PRK13104 307 AALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMT 386 (896)
T ss_pred HHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCC
Confidence
Q ss_pred --cCcccHHHHHHhcCCCCCeEEEeccCCCcee--EEEEeecCCcchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHH
Q 037567 171 --ATEKVRIDIINSLKLKNPYVTIASFDRKNLF--YGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISK 246 (374)
Q Consensus 171 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~ 246 (374)
..... .++...++ ..+...+.+.+... ....++.........++.++.+....+.++||||+++..++.+++
T Consensus 387 GTa~te~-~Ef~~iY~---l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~ 462 (896)
T PRK13104 387 GTADTEA-YEFQQIYN---LEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQ 462 (896)
T ss_pred CCChhHH-HHHHHHhC---CCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHH
Confidence 11100 00111111 00111111111111 111123333455667788887777789999999999999999999
Q ss_pred HHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCc-----------------------------
Q 037567 247 ALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV----------------------------- 297 (374)
Q Consensus 247 ~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~----------------------------- 297 (374)
.|.+.|++...+|+++...+++.+.+.|+.|. |+|||+++++|+|+.--
T Consensus 463 ~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (896)
T PRK13104 463 LLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKR 540 (896)
T ss_pred HHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhh
Confidence 99999999999999999999999999999994 99999999999998621
Q ss_pred ---------cEEEEECCCCChhHHHHhhccCCCCCCceEEEEEeeccC
Q 037567 298 ---------RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN 336 (374)
Q Consensus 298 ---------~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 336 (374)
-+||....+.|..--.|..||+||.|.+|.+-.|++-+|
T Consensus 541 ~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 541 HDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred hhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 257778888888888999999999999999988888766
No 93
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=2.1e-27 Score=222.81 Aligned_cols=323 Identities=21% Similarity=0.195 Sum_probs=227.3
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc---cCCcEEEEcchHHHHHHHHHHHHH---
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV---TGKTALVVSPLISLMQDQVMSLKQ--- 75 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~---~~~~~lil~P~~~l~~q~~~~~~~--- 75 (374)
.++.++.+|+. |++.|.-+.-.+.+|+ +..+.||+|||+++.+++.. .+..+-|++|+..||.|.++++..
T Consensus 71 rEa~~R~lg~~-~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~~ 147 (830)
T PRK12904 71 REASKRVLGMR-HFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYE 147 (830)
T ss_pred HHHHHHHhCCC-CCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHHh
Confidence 45667778884 8888887777776664 99999999999999888752 467789999999999998888765
Q ss_pred -cCCceEEcCCCCCchhhhhhhhcCCeeEEEEcCccc-ccCchhhH----HHHHhcCccEEEEeccchhh-cc-------
Q 037567 76 -RGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKA-CIIPISFW----SKLLKAGVCLFAVDEAHCIS-EW------- 141 (374)
Q Consensus 76 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l-~~~~~~~~----~~~~~~~~~~vviDE~h~~~-~~------- 141 (374)
+|+.+.+..++......... ..++|+++||..+ .++++... .......+.++||||++.+. +.
T Consensus 148 ~LGlsv~~i~~~~~~~er~~~---y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLii 224 (830)
T PRK12904 148 FLGLSVGVILSGMSPEERREA---YAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLII 224 (830)
T ss_pred hcCCeEEEEcCCCCHHHHHHh---cCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceee
Confidence 47888777765544433222 3479999999998 55554422 22345678899999999985 10
Q ss_pred -c--CcchHHHHHHHHHHHhc-----------------------------------------------------------
Q 037567 142 -G--HDFRLEYKQLDKLRTFL----------------------------------------------------------- 159 (374)
Q Consensus 142 -~--~~~~~~~~~~~~~~~~~----------------------------------------------------------- 159 (374)
| ......+..+..+...+
T Consensus 225 Sg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d 304 (830)
T PRK12904 225 SGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRD 304 (830)
T ss_pred ECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcC
Confidence 0 00000000000000000
Q ss_pred -----------------------------------------------------------CCCCeeEEEeecCcccHHHHH
Q 037567 160 -----------------------------------------------------------LGVPFVALTATATEKVRIDII 180 (374)
Q Consensus 160 -----------------------------------------------------------~~~~~i~~SaT~~~~~~~~~~ 180 (374)
.-.++.+||+|..... ..+.
T Consensus 305 ~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~-~E~~ 383 (830)
T PRK12904 305 VDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEA-EEFR 383 (830)
T ss_pred CcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHH-HHHH
Confidence 0013567777765432 2344
Q ss_pred HhcCCCCCeEEEeccCCCceeEE--EEeecCCcchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeee
Q 037567 181 NSLKLKNPYVTIASFDRKNLFYG--VKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTY 258 (374)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~ 258 (374)
..+++. +...+.+.+..... ..++.........++..+.+....+.++||||+++..++.+++.|.+.|++...+
T Consensus 384 ~iY~l~---vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vL 460 (830)
T PRK12904 384 EIYNLD---VVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVL 460 (830)
T ss_pred HHhCCC---EEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEec
Confidence 444432 22222233332222 2233344445566666666655678899999999999999999999999999999
Q ss_pred ecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCc--------------------------------------cEE
Q 037567 259 HGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV--------------------------------------RHV 300 (374)
Q Consensus 259 ~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~--------------------------------------~~v 300 (374)
|+. ..+|+..+..|..++..|+|||+++++|+|++-- -+|
T Consensus 461 nak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhV 538 (830)
T PRK12904 461 NAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHV 538 (830)
T ss_pred cCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEE
Confidence 996 6789999999999999999999999999999643 257
Q ss_pred EEECCCCChhHHHHhhccCCCCCCceEEEEEeeccC
Q 037567 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN 336 (374)
Q Consensus 301 i~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 336 (374)
|....+.|..--.|..||+||.|.+|.+-.+++-+|
T Consensus 539 igTerhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 539 IGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred EecccCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 888888899999999999999999999988888776
No 94
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.96 E-value=1.2e-28 Score=208.68 Aligned_cols=275 Identities=16% Similarity=0.201 Sum_probs=186.9
Q ss_pred CCcEEEEcchHHHHHHHHHHHHHcCCce-----E-EcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcC
Q 037567 53 GKTALVVSPLISLMQDQVMSLKQRGINA-----E-FLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAG 126 (374)
Q Consensus 53 ~~~~lil~P~~~l~~q~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~ 126 (374)
.+.++|+-|+++|++|+...+++|.... . ++..+......+......+.+|+|+||+++...... ....+.+
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~--g~~~lt~ 363 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISK--GLVTLTH 363 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhc--cceeeee
Confidence 3468999999999999998776653221 2 122222233334445566789999999999877655 5556678
Q ss_pred ccEEEEeccchhhcccCcchHHHHHHHHHHHhcC-------CCCeeEEEeecCcccHHHHHHh-------cCCCCCe---
Q 037567 127 VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLL-------GVPFVALTATATEKVRIDIINS-------LKLKNPY--- 189 (374)
Q Consensus 127 ~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~SaT~~~~~~~~~~~~-------~~~~~~~--- 189 (374)
++++|+||++.+...+.. ..+.++...++ ..+.+.+|||...-..+.+.+. ..+....
T Consensus 364 crFlvlDead~lL~qgy~-----d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vp 438 (725)
T KOG0349|consen 364 CRFLVLDEADLLLGQGYD-----DKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVP 438 (725)
T ss_pred eEEEEecchhhhhhcccH-----HHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccc
Confidence 899999999999876654 34444433333 3578999999765332222211 1111100
Q ss_pred ---EEE-----eccCCCc--e--------------eEEEEeecCCcchHHHHHH-----HHHHhhcCCCcEEEEecchhH
Q 037567 190 ---VTI-----ASFDRKN--L--------------FYGVKVINRGQSFVDELVQ-----EILKSVAGAGSIIVYCMTIKD 240 (374)
Q Consensus 190 ---~~~-----~~~~~~~--~--------------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~lVf~~~~~~ 240 (374)
... ++.+... + ...-...+...+....++. ..+++ ....++||||.++.+
T Consensus 439 etvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~-h~mdkaiifcrtk~d 517 (725)
T KOG0349|consen 439 ETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRR-HAMDKAIIFCRTKQD 517 (725)
T ss_pred hhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhh-hccCceEEEEecccc
Confidence 000 0000000 0 0000000111111111111 11111 356789999999999
Q ss_pred HHHHHHHHHHcC---CceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCCChhHHHHhhc
Q 037567 241 VEEISKALKQLG---VKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESG 317 (374)
Q Consensus 241 ~~~l~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~G 317 (374)
|+.+.+.+.++| +.++.+||+..+.+|.+.++.|..++.+.||||+.+.+|+|+.++.++|++.+|....+|+||||
T Consensus 518 cDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrig 597 (725)
T KOG0349|consen 518 CDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIG 597 (725)
T ss_pred chHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhh
Confidence 999999998864 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCceEEEEEeecc
Q 037567 318 RCGRDGIASVCWLYYARS 335 (374)
Q Consensus 318 R~~R~~~~g~~~~~~~~~ 335 (374)
|+||.-..|.++.++...
T Consensus 598 rvgraermglaislvat~ 615 (725)
T KOG0349|consen 598 RVGRAERMGLAISLVATV 615 (725)
T ss_pred ccchhhhcceeEEEeecc
Confidence 999998888888877654
No 95
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=5.7e-29 Score=223.21 Aligned_cols=320 Identities=20% Similarity=0.244 Sum_probs=225.4
Q ss_pred HcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccc---cccCCcEEEEcchHHHHHHHHHHHHHcCCceEEcC
Q 037567 8 YFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPP---LVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLG 84 (374)
Q Consensus 8 ~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~---~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 84 (374)
.|.|. +.|+|..++..+-++.++++.|.|.+|||.++.-++ +..+.+|++..|-++|-+|.++++..--..+++.+
T Consensus 125 ~YPF~-LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~DVGLMT 203 (1041)
T KOG0948|consen 125 TYPFT-LDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFKDVGLMT 203 (1041)
T ss_pred CCCcc-cCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhcccceee
Confidence 36674 999999999999999999999999999997754433 44688999999999999999999886556666666
Q ss_pred CCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHH-HHHhcCCCC
Q 037567 85 SAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDK-LRTFLLGVP 163 (374)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 163 (374)
++.+.... ..-+|+|.+-|..++.+ +.-....+..||+||+|.+.+..... .|.+ +.-...+.+
T Consensus 204 GDVTInP~--------ASCLVMTTEILRsMLYR--GSEvmrEVaWVIFDEIHYMRDkERGV-----VWEETIIllP~~vr 268 (1041)
T KOG0948|consen 204 GDVTINPD--------ASCLVMTTEILRSMLYR--GSEVMREVAWVIFDEIHYMRDKERGV-----VWEETIILLPDNVR 268 (1041)
T ss_pred cceeeCCC--------CceeeeHHHHHHHHHhc--cchHhheeeeEEeeeehhccccccce-----eeeeeEEeccccce
Confidence 65544322 24688999988777665 55556778899999999997643321 1222 222334789
Q ss_pred eeEEEeecCcccHHHHHHh---cCCCCCeEEEeccCCCceeEEEE---------eecCC---------------------
Q 037567 164 FVALTATATEKVRIDIINS---LKLKNPYVTIASFDRKNLFYGVK---------VINRG--------------------- 210 (374)
Q Consensus 164 ~i~~SaT~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~--------------------- 210 (374)
.+++|||.++... +..| +...+..+++.+.....+..... +.+.+
T Consensus 269 ~VFLSATiPNA~q--FAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~ 346 (1041)
T KOG0948|consen 269 FVFLSATIPNARQ--FAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGES 346 (1041)
T ss_pred EEEEeccCCCHHH--HHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCC
Confidence 9999999999764 3544 33445555554443222111110 00000
Q ss_pred ---------------------cchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHc------------------
Q 037567 211 ---------------------QSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQL------------------ 251 (374)
Q Consensus 211 ---------------------~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~------------------ 251 (374)
...+..++..+..+ +..++|||+-++++|+.++-.+.+.
T Consensus 347 ~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~--~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nA 424 (1041)
T KOG0948|consen 347 DGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMER--NYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNA 424 (1041)
T ss_pred ccccccccccccCCcCCCCCCcccHHHHHHHHHhh--cCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHH
Confidence 01223444444443 4578999999999999999766443
Q ss_pred ---------------------CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCC---
Q 037567 252 ---------------------GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPK--- 307 (374)
Q Consensus 252 ---------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~--- 307 (374)
.-.++.+||++-+--++.+.-.|++|-+++|+||...+.|+|.|.-++|+ .....
T Consensus 425 i~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvF-T~~rKfDG 503 (1041)
T KOG0948|consen 425 IDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVF-TAVRKFDG 503 (1041)
T ss_pred HHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEE-eeccccCC
Confidence 11257899999988889999999999999999999999999999655554 33221
Q ss_pred ------ChhHHHHhhccCCCCCC--ceEEEEEeecc-CCCcccceecccc
Q 037567 308 ------TLESYYQESGRCGRDGI--ASVCWLYYARS-NFAKGDFYCGESQ 348 (374)
Q Consensus 308 ------s~~~~~Q~~GR~~R~~~--~g~~~~~~~~~-~~~~~~~~~~~~~ 348 (374)
|.-+|+|+.|||||.|. .|.|+++++.. +....+.+++...
T Consensus 504 ~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~a 553 (1041)
T KOG0948|consen 504 KKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGSA 553 (1041)
T ss_pred cceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCCC
Confidence 67899999999999985 68888887763 3444455554433
No 96
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=1.2e-27 Score=223.45 Aligned_cols=323 Identities=19% Similarity=0.180 Sum_probs=224.2
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc---cCCcEEEEcchHHHHHHHHHHHHH---
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV---TGKTALVVSPLISLMQDQVMSLKQ--- 75 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~---~~~~~lil~P~~~l~~q~~~~~~~--- 75 (374)
.++.++.+|+. |++.|.-+.-.+.+|+ +..+.||+|||+++.+++.. .+..+-+++|+.-||.+.++++..
T Consensus 70 rEa~~R~~g~~-~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~~~ 146 (796)
T PRK12906 70 REGAKRVLGLR-PFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYR 146 (796)
T ss_pred HHHHHHHhCCC-CchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHHHH
Confidence 46677888884 8888888777776666 99999999999988877654 688999999999999998877764
Q ss_pred -cCCceEEcCCCCCchhhhhhhhcCCeeEEEEcCccccc-Cchh----hHHHHHhcCccEEEEeccchhh-cc-------
Q 037567 76 -RGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACI-IPIS----FWSKLLKAGVCLFAVDEAHCIS-EW------- 141 (374)
Q Consensus 76 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~-~~~~----~~~~~~~~~~~~vviDE~h~~~-~~------- 141 (374)
+|+.+.+..+....... .....++|+++|...+.. +++. .........+.+.||||++.+. +.
T Consensus 147 ~LGl~vg~i~~~~~~~~r---~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLii 223 (796)
T PRK12906 147 WLGLTVGLNLNSMSPDEK---RAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLII 223 (796)
T ss_pred hcCCeEEEeCCCCCHHHH---HHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceec
Confidence 58888877665444332 223457999999987642 2221 1123334568899999999974 10
Q ss_pred ---cCcchHHHHHHHHHHHhcC--------------------C-------------------------------------
Q 037567 142 ---GHDFRLEYKQLDKLRTFLL--------------------G------------------------------------- 161 (374)
Q Consensus 142 ---~~~~~~~~~~~~~~~~~~~--------------------~------------------------------------- 161 (374)
.......+..+..+...+. .
T Consensus 224 sg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~ 303 (796)
T PRK12906 224 SGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQ 303 (796)
T ss_pred CCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHH
Confidence 0000001111100000000 0
Q ss_pred ------------------------------------------------------------------------CCeeEEEe
Q 037567 162 ------------------------------------------------------------------------VPFVALTA 169 (374)
Q Consensus 162 ------------------------------------------------------------------------~~~i~~Sa 169 (374)
.++.+||+
T Consensus 304 Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTG 383 (796)
T PRK12906 304 ALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTG 383 (796)
T ss_pred HHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCC
Confidence 12445555
Q ss_pred ecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEE--EeecCCcchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHH
Q 037567 170 TATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGV--KVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKA 247 (374)
Q Consensus 170 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~ 247 (374)
|..... ..+...+++. +...+.+.+...... ..+.........++..+......+.++||||+++..++.+++.
T Consensus 384 Ta~~e~-~Ef~~iY~l~---vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~ 459 (796)
T PRK12906 384 TAKTEE-EEFREIYNME---VITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHL 459 (796)
T ss_pred CCHHHH-HHHHHHhCCC---EEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHH
Confidence 543221 2233333322 222222333322222 2233334455566666666666889999999999999999999
Q ss_pred HHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEecccccccccc---Ccc-----EEEEECCCCChhHHHHhhccC
Q 037567 248 LKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP---DVR-----HVIHYGCPKTLESYYQESGRC 319 (374)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~---~~~-----~vi~~~~p~s~~~~~Q~~GR~ 319 (374)
|.+.+++...+|+++...++..+...++.|. |+|||+++++|+|++ ++. +||++..|.|...+.|+.||+
T Consensus 460 L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRt 537 (796)
T PRK12906 460 LDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRS 537 (796)
T ss_pred HHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhh
Confidence 9999999999999988888888877777775 999999999999995 788 999999999999999999999
Q ss_pred CCCCCceEEEEEeeccC
Q 037567 320 GRDGIASVCWLYYARSN 336 (374)
Q Consensus 320 ~R~~~~g~~~~~~~~~~ 336 (374)
||.|.+|.+..+++.+|
T Consensus 538 GRqG~~G~s~~~~sleD 554 (796)
T PRK12906 538 GRQGDPGSSRFYLSLED 554 (796)
T ss_pred ccCCCCcceEEEEeccc
Confidence 99999999999988875
No 97
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.95 E-value=4e-27 Score=217.47 Aligned_cols=334 Identities=22% Similarity=0.257 Sum_probs=230.2
Q ss_pred HhHcCCCCCchhHHHHH--HHHHcCCCEEEEccCCCCchhhhhccccc----cCCcEEEEcchHHHHHHHHHHHHHc---
Q 037567 6 KKYFGYSVFRPYQKDVI--QRIIEKRDCLVVMATGSGKSLCYQLPPLV----TGKTALVVSPLISLMQDQVMSLKQR--- 76 (374)
Q Consensus 6 ~~~~~~~~~~~~Q~~~~--~~~~~~~~~l~~a~tGsGKT~~~~l~~~~----~~~~~lil~P~~~l~~q~~~~~~~~--- 76 (374)
.+..|...++.||.+++ +++.++++.+..+||+.|||+++.+.++. ..+.++.+.|..+.+.+....+..+
T Consensus 216 ~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~ 295 (1008)
T KOG0950|consen 216 AKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSID 295 (1008)
T ss_pred HHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhccc
Confidence 34468889999999998 57888999999999999999988776665 4788999999999988888888765
Q ss_pred -CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHH
Q 037567 77 -GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKL 155 (374)
Q Consensus 77 -~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~ 155 (374)
|+.+...++..+..... ..-.+.|+|.|+-..+.++....-....+.+|||||.|.+.+.+.+.... ..+.++
T Consensus 296 ~G~~ve~y~g~~~p~~~~-----k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE-~~l~k~ 369 (1008)
T KOG0950|consen 296 LGFPVEEYAGRFPPEKRR-----KRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILE-LLLAKI 369 (1008)
T ss_pred cCCcchhhcccCCCCCcc-----cceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHH-HHHHHH
Confidence 55555454433333322 22489999999998888887777777788999999999998876654333 222333
Q ss_pred HHhcCC--CCeeEEEeecCcccHHHHHHhcCCCCCeEEEecc------CCCceeEEE-E---------eecC--CcchHH
Q 037567 156 RTFLLG--VPFVALTATATEKVRIDIINSLKLKNPYVTIASF------DRKNLFYGV-K---------VINR--GQSFVD 215 (374)
Q Consensus 156 ~~~~~~--~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~---------~~~~--~~~~~~ 215 (374)
.-.... .++|+||||.++... +..++...-+.....+. ......+.. . .... ....-+
T Consensus 370 ~y~~~~~~~~iIGMSATi~N~~l--L~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD 447 (1008)
T KOG0950|consen 370 LYENLETSVQIIGMSATIPNNSL--LQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDEDPD 447 (1008)
T ss_pred HHhccccceeEeeeecccCChHH--HHHHhhhhheecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCCCc
Confidence 222222 569999999988653 23333311110000000 000000000 0 0000 000012
Q ss_pred HHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHc--------------------------------------CCceee
Q 037567 216 ELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQL--------------------------------------GVKAGT 257 (374)
Q Consensus 216 ~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~--------------------------------------~~~~~~ 257 (374)
.++....+...++.++||||++++.|+.++..+... ...+.+
T Consensus 448 ~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAy 527 (1008)
T KOG0950|consen 448 HLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAY 527 (1008)
T ss_pred ceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheecccccee
Confidence 223333344445667999999999999888554321 234678
Q ss_pred eecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECC----CCChhHHHHhhccCCCCCC--ceEEEEE
Q 037567 258 YHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGC----PKTLESYYQESGRCGRDGI--ASVCWLY 331 (374)
Q Consensus 258 ~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~----p~s~~~~~Q~~GR~~R~~~--~g~~~~~ 331 (374)
+|++++.++|+.+...|++|...|+++|+.+..|+|+|..++++-... ..+..+|.||+|||||.|- .|.+++.
T Consensus 528 HhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI 607 (1008)
T KOG0950|consen 528 HHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILI 607 (1008)
T ss_pred cccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEE
Confidence 899999999999999999999999999999999999999888875432 3477999999999999975 5778999
Q ss_pred eeccCCCcccceeccc
Q 037567 332 YARSNFAKGDFYCGES 347 (374)
Q Consensus 332 ~~~~~~~~~~~~~~~~ 347 (374)
+...+......+....
T Consensus 608 ~k~~e~~~~~~lv~~~ 623 (1008)
T KOG0950|consen 608 IKSSEKKRVRELVNSP 623 (1008)
T ss_pred eeccchhHHHHHHhcc
Confidence 8888876555554433
No 98
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.95 E-value=1.9e-26 Score=219.12 Aligned_cols=309 Identities=20% Similarity=0.251 Sum_probs=212.0
Q ss_pred HHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcc---ccccCCcEEEEcchHHHHHHHHHHHHHcCCce-
Q 037567 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP---PLVTGKTALVVSPLISLMQDQVMSLKQRGINA- 80 (374)
Q Consensus 5 l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~---~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~- 80 (374)
+...+||+ |.++|.+++..+.++.+++++||||+|||.....+ ++..+.++++.+|.++|.+|.++++...-..+
T Consensus 112 ~~~~~~F~-LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv~ 190 (1041)
T COG4581 112 PAREYPFE-LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDVA 190 (1041)
T ss_pred HHHhCCCC-cCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhhh
Confidence 44458895 99999999999999999999999999999775433 33467789999999999999999987543322
Q ss_pred ---EEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHH
Q 037567 81 ---EFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRT 157 (374)
Q Consensus 81 ---~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~ 157 (374)
.+.+++.. ...+..++|+|.|-|..++.. .......+..||+||+|.+.+.... -.+.+..-
T Consensus 191 ~~vGL~TGDv~--------IN~~A~clvMTTEILRnMlyr--g~~~~~~i~~ViFDEvHyi~D~eRG-----~VWEE~Ii 255 (1041)
T COG4581 191 DMVGLMTGDVS--------INPDAPCLVMTTEILRNMLYR--GSESLRDIEWVVFDEVHYIGDRERG-----VVWEEVII 255 (1041)
T ss_pred hhccceeccee--------eCCCCceEEeeHHHHHHHhcc--CcccccccceEEEEeeeeccccccc-----hhHHHHHH
Confidence 33333222 223347888888888777665 4455677899999999999875544 44555555
Q ss_pred hcC-CCCeeEEEeecCcccHHHHHHhcCC---CCCeEEEeccCCCceeEEEE-------eecCCcch-------------
Q 037567 158 FLL-GVPFVALTATATEKVRIDIINSLKL---KNPYVTIASFDRKNLFYGVK-------VINRGQSF------------- 213 (374)
Q Consensus 158 ~~~-~~~~i~~SaT~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~------------- 213 (374)
.++ ..++|+||||.+++.. +..|+.. .+..++..+.....+...+. ..+.....
T Consensus 256 ~lP~~v~~v~LSATv~N~~E--F~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~ 333 (1041)
T COG4581 256 LLPDHVRFVFLSATVPNAEE--FAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLS 333 (1041)
T ss_pred hcCCCCcEEEEeCCCCCHHH--HHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhh
Confidence 555 5699999999998774 4555542 22222222222111111110 00100000
Q ss_pred ---------------------------------HHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHc---------
Q 037567 214 ---------------------------------VDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQL--------- 251 (374)
Q Consensus 214 ---------------------------------~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~--------- 251 (374)
..++++.+.. .+.-++++|+-++..|+..+..+...
T Consensus 334 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~--~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e 411 (1041)
T COG4581 334 CFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK--DNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKE 411 (1041)
T ss_pred ccchhccccCccccccccccccccCCcccccccchHHHhhhhh--hcCCceEEEEEchhhHHHHHHHhcccccccCCcHH
Confidence 0112222211 24457999999999998888666421
Q ss_pred -------------------CCc-------------eeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccE
Q 037567 252 -------------------GVK-------------AGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299 (374)
Q Consensus 252 -------------------~~~-------------~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~ 299 (374)
+++ ++.+|+++=+..+..+...|+.|-++|+++|..++.|+|.|.-++
T Consensus 412 ~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartv 491 (1041)
T COG4581 412 RAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTV 491 (1041)
T ss_pred HHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccce
Confidence 111 346899999999999999999999999999999999999996655
Q ss_pred EEEECC---------CCChhHHHHhhccCCCCCCc--eEEEEEeec
Q 037567 300 VIHYGC---------PKTLESYYQESGRCGRDGIA--SVCWLYYAR 334 (374)
Q Consensus 300 vi~~~~---------p~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~ 334 (374)
|+ .+. .-++.+|.|+.|||||.|.+ |.+++...+
T Consensus 492 v~-~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 492 VF-TSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred ee-eeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 55 322 23789999999999999864 666665333
No 99
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.95 E-value=3.6e-26 Score=204.27 Aligned_cols=327 Identities=17% Similarity=0.216 Sum_probs=227.4
Q ss_pred chhHHHHHHHHHcCCCEEEEccCCCCchhh---hhccc-cccCCcEEEEcchHHHHHHHHHHHHH-c----CCceEEcCC
Q 037567 15 RPYQKDVIQRIIEKRDCLVVMATGSGKSLC---YQLPP-LVTGKTALVVSPLISLMQDQVMSLKQ-R----GINAEFLGS 85 (374)
Q Consensus 15 ~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~---~~l~~-~~~~~~~lil~P~~~l~~q~~~~~~~-~----~~~~~~~~~ 85 (374)
+.+-.+++..+.+++-+++.|+||||||.- |+..+ .....++.+.-|+|-.+-.+++.+.. . |..+.+..
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~I- 131 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTI- 131 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEE-
Confidence 345556777777788899999999999942 22211 23455588999999777766666542 2 33332211
Q ss_pred CCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCee
Q 037567 86 AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV 165 (374)
Q Consensus 86 ~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 165 (374)
. ..........|.++|.+.|++ .....-.+..+++||+||||. ........+..+.++....++.++|
T Consensus 132 ---R---Fed~ts~~TrikymTDG~LLR---E~l~Dp~LskYsvIIlDEAHE---Rsl~TDiLlGlLKki~~~R~~LklI 199 (674)
T KOG0922|consen 132 ---R---FEDSTSKDTRIKYMTDGMLLR---EILKDPLLSKYSVIILDEAHE---RSLHTDILLGLLKKILKKRPDLKLI 199 (674)
T ss_pred ---E---ecccCCCceeEEEecchHHHH---HHhcCCccccccEEEEechhh---hhhHHHHHHHHHHHHHhcCCCceEE
Confidence 1 111112235799999997754 333444578899999999994 4455556667888888888889999
Q ss_pred EEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEEEee-cCCcchHHHHHHH---HHHhhcCCCcEEEEecchhHH
Q 037567 166 ALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVI-NRGQSFVDELVQE---ILKSVAGAGSIIVYCMTIKDV 241 (374)
Q Consensus 166 ~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~lVf~~~~~~~ 241 (374)
.||||...+.. ...++. -+.+..+.-. ....+.+. ....+.+.+.+.. +... .+.+.+|||....++.
T Consensus 200 imSATlda~kf---S~yF~~-a~i~~i~GR~---fPVei~y~~~p~~dYv~a~~~tv~~Ih~~-E~~GDILvFLtGqeEI 271 (674)
T KOG0922|consen 200 IMSATLDAEKF---SEYFNN-APILTIPGRT---FPVEILYLKEPTADYVDAALITVIQIHLT-EPPGDILVFLTGQEEI 271 (674)
T ss_pred EEeeeecHHHH---HHHhcC-CceEeecCCC---CceeEEeccCCchhhHHHHHHHHHHHHcc-CCCCCEEEEeCCHHHH
Confidence 99999986543 333322 2222222211 11111111 2223333333333 3333 5778999999999999
Q ss_pred HHHHHHHHHc----CC----ceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECC--------
Q 037567 242 EEISKALKQL----GV----KAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGC-------- 305 (374)
Q Consensus 242 ~~l~~~l~~~----~~----~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~-------- 305 (374)
+.+++.|.+. +. -+.++||.++.++..++...--.|..+|+++|+++++++.+|++..||+.+.
T Consensus 272 e~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p 351 (674)
T KOG0922|consen 272 EAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNP 351 (674)
T ss_pred HHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeecc
Confidence 9999999875 11 2468999999999999988888899999999999999999999999996654
Q ss_pred ----------CCChhHHHHhhccCCCCCCceEEEEEeeccCCCcccceeccccchHHHHHHHHHHHHHHHH
Q 037567 306 ----------PKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLLAAQRY 366 (374)
Q Consensus 306 ----------p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 366 (374)
|-|...-.||.|||||.+ +|.||-+|+++++ +++-....++.++-.+-.-+.+|.+.
T Consensus 352 ~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~---~~~~~~~~PEI~R~~Ls~~vL~Lkal 418 (674)
T KOG0922|consen 352 RTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAY---DKMPLQTVPEIQRVNLSSAVLQLKAL 418 (674)
T ss_pred ccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHH---hhcccCCCCceeeechHHHHHHHHhc
Confidence 337888999999999986 8999999999888 66667778888877776666666554
No 100
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.95 E-value=3.2e-26 Score=217.48 Aligned_cols=298 Identities=16% Similarity=0.125 Sum_probs=181.0
Q ss_pred CchhHHHHHHHHHc----------CCCEEEEccCCCCchhhhhcccc-----ccCCcEEEEcchHHHHHHHHHHHHHcCC
Q 037567 14 FRPYQKDVIQRIIE----------KRDCLVVMATGSGKSLCYQLPPL-----VTGKTALVVSPLISLMQDQVMSLKQRGI 78 (374)
Q Consensus 14 ~~~~Q~~~~~~~~~----------~~~~l~~a~tGsGKT~~~~l~~~-----~~~~~~lil~P~~~l~~q~~~~~~~~~~ 78 (374)
++++|..|+..+.. .+..++++|||||||++++..+. ...+++|+++|+.+|..|+.+.+..++.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~ 318 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQK 318 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCC
Confidence 78899999987643 24789999999999987654432 2467899999999999999999999865
Q ss_pred ceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCc-cEEEEeccchhhcccCcchHHHHHHHHHHH
Q 037567 79 NAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGV-CLFAVDEAHCISEWGHDFRLEYKQLDKLRT 157 (374)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~-~~vviDE~h~~~~~~~~~~~~~~~~~~~~~ 157 (374)
.... ...+..............|+|+|.+++................ .+||+||||+... + .....+..
T Consensus 319 ~~~~--~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~-~-------~~~~~l~~ 388 (667)
T TIGR00348 319 DCAE--RIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY-G-------ELAKNLKK 388 (667)
T ss_pred CCCc--ccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc-h-------HHHHHHHh
Confidence 3111 1111111112222334689999999986532221111111111 2899999998532 1 12233445
Q ss_pred hcCCCCeeEEEeecCcccHHHHHHhcCCC-CCeEEEecc---CCCceeEEEEeec--------C----------------
Q 037567 158 FLLGVPFVALTATATEKVRIDIINSLKLK-NPYVTIASF---DRKNLFYGVKVIN--------R---------------- 209 (374)
Q Consensus 158 ~~~~~~~i~~SaT~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~--------~---------------- 209 (374)
.+++..+++|||||...........++.. ...+...+. ........+.... .
T Consensus 389 ~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~ 468 (667)
T TIGR00348 389 ALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPE 468 (667)
T ss_pred hCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhhhc
Confidence 67789999999999754221112222210 011111000 0000000000000 0
Q ss_pred ----------------------CcchHHHHHHHHHHhh----c-CCCcEEEEecchhHHHHHHHHHHHc-----CCceee
Q 037567 210 ----------------------GQSFVDELVQEILKSV----A-GAGSIIVYCMTIKDVEEISKALKQL-----GVKAGT 257 (374)
Q Consensus 210 ----------------------~~~~~~~~~~~~~~~~----~-~~~~~lVf~~~~~~~~~l~~~l~~~-----~~~~~~ 257 (374)
..........++.++. . .+++++|+|.++..|..+++.|.+. +.....
T Consensus 469 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv 548 (667)
T TIGR00348 469 RIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIV 548 (667)
T ss_pred cccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEE
Confidence 0001112222222221 1 2589999999999999999998764 233444
Q ss_pred eecCCChH---------------------HHHHHHHhhhc-CCeeEEEEeccccccccccCccEEEEECCCCChhHHHHh
Q 037567 258 YHGQMGSK---------------------AREEAHRLFIR-DEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQE 315 (374)
Q Consensus 258 ~~~~~~~~---------------------~r~~~~~~f~~-g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~ 315 (374)
+++..+.+ ....++++|.+ +..+|+|+++++.+|+|.|.+.+++...+..+ ..++|+
T Consensus 549 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQa 627 (667)
T TIGR00348 549 MTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQA 627 (667)
T ss_pred ecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccc-cHHHHH
Confidence 55443322 12467888876 57899999999999999999999997776665 458999
Q ss_pred hccCCCC
Q 037567 316 SGRCGRD 322 (374)
Q Consensus 316 ~GR~~R~ 322 (374)
+||+.|.
T Consensus 628 i~R~nR~ 634 (667)
T TIGR00348 628 IARTNRI 634 (667)
T ss_pred HHHhccc
Confidence 9999994
No 101
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.94 E-value=9.4e-26 Score=213.00 Aligned_cols=336 Identities=16% Similarity=0.155 Sum_probs=231.9
Q ss_pred CchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc----cCCcEEEEcchHHHHHHHHHHHHH-cCCceEEcCCCCC
Q 037567 14 FRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV----TGKTALVVSPLISLMQDQVMSLKQ-RGINAEFLGSAQT 88 (374)
Q Consensus 14 ~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~----~~~~~lil~P~~~l~~q~~~~~~~-~~~~~~~~~~~~~ 88 (374)
.+....+.+.++.++..+++.|+||||||.-.-..++. ...++.+.-|+|--+..+...+.. +|.+..-..+...
T Consensus 51 v~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~i 130 (845)
T COG1643 51 VTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSI 130 (845)
T ss_pred cHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEE
Confidence 34456677777878889999999999999642222222 356889999999777777776653 3333221111111
Q ss_pred chhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcC-CCCeeEE
Q 037567 89 DSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLL-GVPFVAL 167 (374)
Q Consensus 89 ~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~ 167 (374)
. ..........|-++|.+.|...+. ....++.+++||+||+|+ .+.+....+..+..+....+ +.++|.|
T Consensus 131 R---fe~~~s~~Trik~mTdGiLlrei~---~D~~Ls~ys~vIiDEaHE---RSl~tDilLgllk~~~~~rr~DLKiIim 201 (845)
T COG1643 131 R---FESKVSPRTRIKVMTDGILLREIQ---NDPLLSGYSVVIIDEAHE---RSLNTDILLGLLKDLLARRRDDLKLIIM 201 (845)
T ss_pred E---eeccCCCCceeEEeccHHHHHHHh---hCcccccCCEEEEcchhh---hhHHHHHHHHHHHHHHhhcCCCceEEEE
Confidence 1 112223345799999998865443 344578999999999995 44555566677777666666 6999999
Q ss_pred EeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEEEeecCCcchHHHHHHHHHHh--hcCCCcEEEEecchhHHHHHH
Q 037567 168 TATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKS--VAGAGSIIVYCMTIKDVEEIS 245 (374)
Q Consensus 168 SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~lVf~~~~~~~~~l~ 245 (374)
|||...... ...++. -+.+...... -.+...+......+..+.+.+...+.. ....|.+|||.+...+.+..+
T Consensus 202 SATld~~rf---s~~f~~-apvi~i~GR~-fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~ 276 (845)
T COG1643 202 SATLDAERF---SAYFGN-APVIEIEGRT-YPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTA 276 (845)
T ss_pred ecccCHHHH---HHHcCC-CCEEEecCCc-cceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHH
Confidence 999987643 444432 2222222111 111111101111111133333333222 135789999999999999999
Q ss_pred HHHHH----cCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCC---------------
Q 037567 246 KALKQ----LGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCP--------------- 306 (374)
Q Consensus 246 ~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p--------------- 306 (374)
+.|.+ ....+.++||.++.++..++++.-..|+.+|+++|+++++++.+|+++.||+.+.-
T Consensus 277 ~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~ 356 (845)
T COG1643 277 EWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLE 356 (845)
T ss_pred HHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeee
Confidence 99998 34678899999999999998888878877899999999999999999999976643
Q ss_pred ---CChhHHHHhhccCCCCCCceEEEEEeeccCCCcccceeccccchHHHHHHHHHHHHHHHHh
Q 037567 307 ---KTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLLAAQRYC 367 (374)
Q Consensus 307 ---~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 367 (374)
-|-.+..||.|||||.+ +|.||-+|+.+++. .+.....++..+..+..-..+|..+.
T Consensus 357 ~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~~---~~~~~t~PEIlrtdLs~~vL~l~~~G 416 (845)
T COG1643 357 TEPISKASADQRAGRAGRTG-PGICYRLYSEEDFL---AFPEFTLPEILRTDLSGLVLQLKSLG 416 (845)
T ss_pred EEEechhhhhhhccccccCC-CceEEEecCHHHHH---hcccCCChhhhhcchHHHHHHHHhcC
Confidence 37788999999999985 89999999997765 66777788888877777777776654
No 102
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.94 E-value=1.1e-25 Score=216.01 Aligned_cols=325 Identities=21% Similarity=0.217 Sum_probs=206.5
Q ss_pred CchhHHHHHHHHHc---CC-CEEEEccCCCCchhhhhccccc-------cCCcEEEEcchHHHHHHHHHHHHHcCCceEE
Q 037567 14 FRPYQKDVIQRIIE---KR-DCLVVMATGSGKSLCYQLPPLV-------TGKTALVVSPLISLMQDQVMSLKQRGINAEF 82 (374)
Q Consensus 14 ~~~~Q~~~~~~~~~---~~-~~l~~a~tGsGKT~~~~l~~~~-------~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 82 (374)
.++.|..++..+.+ .. .+++.||||+|||.+.+..+.. ...+++++.|+++++++..+.+..+......
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~ 275 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSV 275 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccccc
Confidence 47889999988775 34 6789999999999876655432 3678999999999999999999875322222
Q ss_pred cC----CCCCchhhhhh-------------hhcCCeeEEEEcCcccccCch--hhHHHHHhcCccEEEEeccchhhcccC
Q 037567 83 LG----SAQTDSSVQTK-------------AETGYFQLLFMTPEKACIIPI--SFWSKLLKAGVCLFAVDEAHCISEWGH 143 (374)
Q Consensus 83 ~~----~~~~~~~~~~~-------------~~~~~~~i~i~T~~~l~~~~~--~~~~~~~~~~~~~vviDE~h~~~~~~~ 143 (374)
.. +.......... .......+.++||.+...... ..+.....-..+.+|+||+|.+.+..
T Consensus 276 ~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~- 354 (733)
T COG1203 276 IGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADET- 354 (733)
T ss_pred ccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccc-
Confidence 11 11111100000 001112334444444333100 00011222345689999999987643
Q ss_pred cchHHHHHHHHHHHhcCCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEec----cCCCceeEEEEeecCCcchHHHHHH
Q 037567 144 DFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTIAS----FDRKNLFYGVKVINRGQSFVDELVQ 219 (374)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (374)
....+..+...... .+.++++||||+++.....+....+.......... .+................ ......
T Consensus 355 -~~~~l~~~i~~l~~-~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~ 431 (733)
T COG1203 355 -MLAALLALLEALAE-AGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGP-QEELIE 431 (733)
T ss_pred -hHHHHHHHHHHHHh-CCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhh-hHhhhh
Confidence 22222222222222 27899999999999887655555543333222211 011111111000000000 013344
Q ss_pred HHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhh----cCCeeEEEEecccccccccc
Q 037567 220 EILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFI----RDEIRVMVATMAFGMGIDKP 295 (374)
Q Consensus 220 ~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~----~g~~~ilv~t~~~~~G~d~~ 295 (374)
........+++++|.|||+..|.++++.|+..+.++..+||.+...+|.+.++.+. .+...|+|+|+.++.|+|+
T Consensus 432 ~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi- 510 (733)
T COG1203 432 LISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI- 510 (733)
T ss_pred cchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc-
Confidence 45556678899999999999999999999998778999999999999998877544 4677899999999999999
Q ss_pred CccEEEEECCCCChhHHHHhhccCCCCC--CceEEEEEeeccCCCcccceec
Q 037567 296 DVRHVIHYGCPKTLESYYQESGRCGRDG--IASVCWLYYARSNFAKGDFYCG 345 (374)
Q Consensus 296 ~~~~vi~~~~p~s~~~~~Q~~GR~~R~~--~~g~~~~~~~~~~~~~~~~~~~ 345 (374)
+.+.+|-=-.| ++..+||+||++|.| .+|.++++..............
T Consensus 511 dfd~mITe~aP--idSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~ 560 (733)
T COG1203 511 DFDVLITELAP--IDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYE 560 (733)
T ss_pred ccCeeeecCCC--HHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhh
Confidence 47777644444 899999999999999 6777777776666555554443
No 103
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=8e-25 Score=205.24 Aligned_cols=322 Identities=17% Similarity=0.146 Sum_probs=217.6
Q ss_pred hHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc---cCCcEEEEcchHHHHHHHHHHHHH----
Q 037567 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV---TGKTALVVSPLISLMQDQVMSLKQ---- 75 (374)
Q Consensus 3 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~---~~~~~lil~P~~~l~~q~~~~~~~---- 75 (374)
++-++.+|+. +++.|.-+--.+.+|+ +..++||.|||+++.+|++. .+..|.|++|+..|+.+..+++..
T Consensus 73 Eaa~R~lgm~-~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l~~~ 149 (908)
T PRK13107 73 EASKRVFEMR-HFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLFEF 149 (908)
T ss_pred HHHHHHhCCC-cCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 4556667774 7777765555554444 99999999999999888764 467799999999999987777664
Q ss_pred cCCceEEcCCCCCchhhhhhhhcCCeeEEEEcCccc-ccCchhhH----HHHHhcCccEEEEeccchhhcc---------
Q 037567 76 RGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKA-CIIPISFW----SKLLKAGVCLFAVDEAHCISEW--------- 141 (374)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l-~~~~~~~~----~~~~~~~~~~vviDE~h~~~~~--------- 141 (374)
+|+.+....++... ........++|+++||..+ .++++..+ .......+.++||||++.+.-.
T Consensus 150 lGlsv~~i~~~~~~---~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIIS 226 (908)
T PRK13107 150 LGLTVGINVAGLGQ---QEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIIS 226 (908)
T ss_pred cCCeEEEecCCCCH---HHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeec
Confidence 47887776654443 2233345689999999998 55555421 1223367889999999998521
Q ss_pred cC--cchHHHHHHHHHHHhcC--------------------CCCeeEEE-------------------------------
Q 037567 142 GH--DFRLEYKQLDKLRTFLL--------------------GVPFVALT------------------------------- 168 (374)
Q Consensus 142 ~~--~~~~~~~~~~~~~~~~~--------------------~~~~i~~S------------------------------- 168 (374)
|. .....+..+..+...+. ..+.+.+|
T Consensus 227 g~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~ 306 (908)
T PRK13107 227 GAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISL 306 (908)
T ss_pred CCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHH
Confidence 00 00111111111111100 11222222
Q ss_pred --------------------------------------------------------------------------------
Q 037567 169 -------------------------------------------------------------------------------- 168 (374)
Q Consensus 169 -------------------------------------------------------------------------------- 168 (374)
T Consensus 307 ~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~k 386 (908)
T PRK13107 307 LHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEK 386 (908)
T ss_pred HHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhH
Confidence
Q ss_pred -----eecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEE--EeecCCcchHHHHHHHHHHhhcCCCcEEEEecchhHH
Q 037567 169 -----ATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGV--KVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241 (374)
Q Consensus 169 -----aT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~ 241 (374)
+|...... ++...+++ .+...+.+.+...... .++.........++.++.+....+.++||||.++..+
T Consensus 387 L~GMTGTa~te~~-Ef~~iY~l---~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~s 462 (908)
T PRK13107 387 LAGMTGTADTEAF-EFQHIYGL---DTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQS 462 (908)
T ss_pred hhcccCCChHHHH-HHHHHhCC---CEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHH
Confidence 22211110 11111111 1111111111111111 1233334556778888877777899999999999999
Q ss_pred HHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCc------------------------
Q 037567 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV------------------------ 297 (374)
Q Consensus 242 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~------------------------ 297 (374)
+.++..|.+.+++...+|++.+..++..+.+.|+.|. |+|||+++++|+|+.--
T Consensus 463 e~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~ 540 (908)
T PRK13107 463 ELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKAD 540 (908)
T ss_pred HHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHH
Confidence 9999999999999999999999999999999999998 99999999999999621
Q ss_pred -------------cEEEEECCCCChhHHHHhhccCCCCCCceEEEEEeeccC
Q 037567 298 -------------RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN 336 (374)
Q Consensus 298 -------------~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 336 (374)
-+||....+.|..-=.|..||+||.|.+|..-.|++-+|
T Consensus 541 ~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED 592 (908)
T PRK13107 541 WQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMED 592 (908)
T ss_pred HHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCc
Confidence 268888888898888999999999999999988888776
No 104
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=4.1e-25 Score=207.52 Aligned_cols=126 Identities=19% Similarity=0.132 Sum_probs=102.6
Q ss_pred CCcchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccc
Q 037567 209 RGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAF 288 (374)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~ 288 (374)
........++.++.+....+.++||-|.+....+.++..|.+.|++...++......+-..+.+.-+. -.|.|+|+++
T Consensus 549 t~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~~~Ea~iia~AG~~--g~VTIATNmA 626 (970)
T PRK12899 549 TEREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQEAEIIAGAGKL--GAVTVATNMA 626 (970)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchhhhHHHHHHhcCCC--CcEEEeeccc
Confidence 33456677888888888889999999999999999999999999998888877544444444333222 4699999999
Q ss_pred cccccccCc--------cEEEEECCCCChhHHHHhhccCCCCCCceEEEEEeeccC
Q 037567 289 GMGIDKPDV--------RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN 336 (374)
Q Consensus 289 ~~G~d~~~~--------~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 336 (374)
++|.|+.-- -+||....+.|..--.|..||+||.|.+|.+..+++-+|
T Consensus 627 GRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlED 682 (970)
T PRK12899 627 GRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFED 682 (970)
T ss_pred cCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 999998532 258888889999999999999999999999988888776
No 105
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.94 E-value=1.5e-24 Score=188.75 Aligned_cols=165 Identities=24% Similarity=0.258 Sum_probs=130.6
Q ss_pred CCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEEEeecCCcchHHHHHHHHHHhhcCCCcEEEEecchhHH
Q 037567 162 VPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241 (374)
Q Consensus 162 ~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~ 241 (374)
.++|++||||.+.... . .+..-...........+....+ ......+.+++.++......+.+++|-+=+++.+
T Consensus 387 ~q~i~VSATPg~~E~e---~-s~~~vveQiIRPTGLlDP~iev---Rp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmA 459 (663)
T COG0556 387 PQTIYVSATPGDYELE---Q-SGGNVVEQIIRPTGLLDPEIEV---RPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKMA 459 (663)
T ss_pred CCEEEEECCCChHHHH---h-ccCceeEEeecCCCCCCCceee---ecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHHH
Confidence 5799999999875432 1 1101111111111111111122 2345578899999999888999999999999999
Q ss_pred HHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCC-----CChhHHHHhh
Q 037567 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCP-----KTLESYYQES 316 (374)
Q Consensus 242 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p-----~s~~~~~Q~~ 316 (374)
+.+.+.|.+.|+++..+|++...-+|.+++.+++.|.++|||+.+.+-+|+|+|.+..|.+++.. .|-..++|-+
T Consensus 460 EdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtI 539 (663)
T COG0556 460 EDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTI 539 (663)
T ss_pred HHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988754 5889999999
Q ss_pred ccCCCCCCceEEEEEeec
Q 037567 317 GRCGRDGIASVCWLYYAR 334 (374)
Q Consensus 317 GR~~R~~~~g~~~~~~~~ 334 (374)
|||.|. ..|.++.+.+.
T Consensus 540 GRAARN-~~GkvIlYAD~ 556 (663)
T COG0556 540 GRAARN-VNGKVILYADK 556 (663)
T ss_pred HHHhhc-cCCeEEEEchh
Confidence 999994 57888877654
No 106
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=4.5e-25 Score=205.41 Aligned_cols=333 Identities=20% Similarity=0.199 Sum_probs=239.5
Q ss_pred CCchhHHHHHHHHHcC----CCEEEEccCCCCchhhhhcc---ccccCCcEEEEcchHHHHHHHHHHHH-HcCCceEEcC
Q 037567 13 VFRPYQKDVIQRIIEK----RDCLVVMATGSGKSLCYQLP---PLVTGKTALVVSPLISLMQDQVMSLK-QRGINAEFLG 84 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~----~~~l~~a~tGsGKT~~~~l~---~~~~~~~~lil~P~~~l~~q~~~~~~-~~~~~~~~~~ 84 (374)
.+.+-|..++..+.+. +..++.+.||||||-+|+-. ++.+++.+|+++|-.+|..|+...|+ .||.++.+++
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlH 277 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLH 277 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhc
Confidence 5778999999998765 67899999999999887644 44579999999999999999999997 5788888888
Q ss_pred CCCCchh---hhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhccc-CcchHHHHHHHHHHHhcC
Q 037567 85 SAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWG-HDFRLEYKQLDKLRTFLL 160 (374)
Q Consensus 85 ~~~~~~~---~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~-~~~~~~~~~~~~~~~~~~ 160 (374)
++.++.+ .+.....+...|+|+|--. -...+.++.+|||||=|.-.-.+ ...+.-.+-+...+....
T Consensus 278 S~Ls~~er~~~W~~~~~G~~~vVIGtRSA---------lF~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~ 348 (730)
T COG1198 278 SGLSPGERYRVWRRARRGEARVVIGTRSA---------LFLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKE 348 (730)
T ss_pred ccCChHHHHHHHHHHhcCCceEEEEechh---------hcCchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHh
Confidence 8776654 4556667889999999322 23456788999999999764221 122333355666666677
Q ss_pred CCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccC---CCceeEEE-E--eecCCcchHHHHHHHHHHhhcCCCcEEEE
Q 037567 161 GVPFVALTATATEKVRIDIINSLKLKNPYVTIASFD---RKNLFYGV-K--VINRGQSFVDELVQEILKSVAGAGSIIVY 234 (374)
Q Consensus 161 ~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~lVf 234 (374)
+.++|+-||||+-+....... +............ .+.+.... . ...........++..+.+.+..++++|+|
T Consensus 349 ~~pvvLgSATPSLES~~~~~~--g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llf 426 (730)
T COG1198 349 NAPVVLGSATPSLESYANAES--GKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLF 426 (730)
T ss_pred CCCEEEecCCCCHHHHHhhhc--CceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEE
Confidence 999999999999876543311 1011111111111 11111111 1 11111114577888888888899999999
Q ss_pred ecchh------------------------------------------------------------HHHHHHHHHHHc--C
Q 037567 235 CMTIK------------------------------------------------------------DVEEISKALKQL--G 252 (374)
Q Consensus 235 ~~~~~------------------------------------------------------------~~~~l~~~l~~~--~ 252 (374)
.|.+. -.+++.+.|++. +
T Consensus 427 lnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~ 506 (730)
T COG1198 427 LNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPG 506 (730)
T ss_pred EccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCC
Confidence 99877 466666777664 5
Q ss_pred CceeeeecCCCh--HHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCC------------ChhHHHHhhcc
Q 037567 253 VKAGTYHGQMGS--KAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPK------------TLESYYQESGR 318 (374)
Q Consensus 253 ~~~~~~~~~~~~--~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~------------s~~~~~Q~~GR 318 (374)
.++..+.++.+. ..-+..+..|..|+.+|||.|+++..|.|+|+++.|...+... ...-+.|-.||
T Consensus 507 ~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGR 586 (730)
T COG1198 507 ARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGR 586 (730)
T ss_pred CcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhh
Confidence 677788887654 3456789999999999999999999999999999876554321 34566899999
Q ss_pred CCCCCCceEEEEEeeccCCCcccceeccccchHHHHHH
Q 037567 319 CGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356 (374)
Q Consensus 319 ~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (374)
+||.+.+|.+++-....|...++.+..++...+..+.+
T Consensus 587 AgR~~~~G~VvIQT~~P~hp~i~~~~~~dy~~F~~~El 624 (730)
T COG1198 587 AGRAGKPGEVVIQTYNPDHPAIQALKRGDYEAFYEQEL 624 (730)
T ss_pred hccCCCCCeEEEEeCCCCcHHHHHHHhcCHHHHHHHHH
Confidence 99998888888888777777777777777666665544
No 107
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.93 E-value=2.4e-24 Score=194.34 Aligned_cols=307 Identities=19% Similarity=0.186 Sum_probs=214.4
Q ss_pred CCchhHHHHHHHHHc----CCCEEEEccCCCCchhhh--hcccc----ccCCcEEEEcchHHHHHHHHHHHHHcCCceE-
Q 037567 13 VFRPYQKDVIQRIIE----KRDCLVVMATGSGKSLCY--QLPPL----VTGKTALVVSPLISLMQDQVMSLKQRGINAE- 81 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~----~~~~l~~a~tGsGKT~~~--~l~~~----~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~- 81 (374)
++++||.+.++.+.+ |-++|+...+|.|||+-. ++.-+ ...++.||++|...|. +|..++.+|-..+.
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~-NW~~Ef~rf~P~l~~ 245 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLD-NWMNEFKRFTPSLNV 245 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHH-HHHHHHHHhCCCcce
Confidence 699999999987764 668899999999999432 22222 2367899999996555 59999999965544
Q ss_pred -EcCCCCCchhh--hhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHh
Q 037567 82 -FLGSAQTDSSV--QTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTF 158 (374)
Q Consensus 82 -~~~~~~~~~~~--~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~ 158 (374)
.+.++...... ......+.++|+|+|++....- ...+...+|+++||||+|++.+.. ..+.+....
T Consensus 246 ~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d----k~~lk~~~W~ylvIDEaHRiKN~~-------s~L~~~lr~ 314 (971)
T KOG0385|consen 246 VVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD----KSFLKKFNWRYLVIDEAHRIKNEK-------SKLSKILRE 314 (971)
T ss_pred EEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh----HHHHhcCCceEEEechhhhhcchh-------hHHHHHHHH
Confidence 44443322211 2223346889999999976532 244555789999999999998755 445566666
Q ss_pred cCCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEec--------------------------------------------
Q 037567 159 LLGVPFVALTATATEKVRIDIINSLKLKNPYVTIAS-------------------------------------------- 194 (374)
Q Consensus 159 ~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------- 194 (374)
+.....+++|+||-.+..-+++..+..--|.+....
T Consensus 315 f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLpp 394 (971)
T KOG0385|consen 315 FKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPP 394 (971)
T ss_pred hcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCC
Confidence 667788999999877655443332221111111000
Q ss_pred ---------c-----------------------------------------CCCceeEEEEe---ecCC-----cchHHH
Q 037567 195 ---------F-----------------------------------------DRKNLFYGVKV---INRG-----QSFVDE 216 (374)
Q Consensus 195 ---------~-----------------------------------------~~~~~~~~~~~---~~~~-----~~~~~~ 216 (374)
. +.+.+.....+ +... ..-...
T Consensus 395 KkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~ 474 (971)
T KOG0385|consen 395 KKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKML 474 (971)
T ss_pred cceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCccee
Confidence 0 00000000000 0000 011112
Q ss_pred HHHHHHHhh-cCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCC---eeEEEEeccccccc
Q 037567 217 LVQEILKSV-AGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDE---IRVMVATMAFGMGI 292 (374)
Q Consensus 217 ~~~~~~~~~-~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~---~~ilv~t~~~~~G~ 292 (374)
++..++..+ ..+.++|||..-.....-+...+.-+++....+.|.++.++|...++.|+... .-.+++|.+.+.|+
T Consensus 475 vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGI 554 (971)
T KOG0385|consen 475 VLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGI 554 (971)
T ss_pred hHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccccc
Confidence 333343333 35779999999999999999998889999999999999999999999999864 44678999999999
Q ss_pred cccCccEEEEECCCCChhHHHHhhccCCCCCCceEEEEE
Q 037567 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLY 331 (374)
Q Consensus 293 d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~ 331 (374)
|+..+++||+|+..|++..-.|...||.|.||...|.++
T Consensus 555 NL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~ 593 (971)
T KOG0385|consen 555 NLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVY 593 (971)
T ss_pred ccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEE
Confidence 999999999999999999999999999999998776655
No 108
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.93 E-value=5.4e-25 Score=201.44 Aligned_cols=294 Identities=20% Similarity=0.154 Sum_probs=187.8
Q ss_pred CCCCchhHHHHHHHHHc----C-CCEEEEccCCCCchhhhhcccc--c---cCCcEEEEcchHHHHHHHHHHHHHcCCce
Q 037567 11 YSVFRPYQKDVIQRIIE----K-RDCLVVMATGSGKSLCYQLPPL--V---TGKTALVVSPLISLMQDQVMSLKQRGINA 80 (374)
Q Consensus 11 ~~~~~~~Q~~~~~~~~~----~-~~~l~~a~tGsGKT~~~~l~~~--~---~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 80 (374)
-..+|+||..|+..+.+ | +.++++++||+|||.++...+- . ..+++|+++.+++|++|....+..+-+..
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~ 242 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFG 242 (875)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCc
Confidence 34689999999988764 2 4689999999999976543222 1 36889999999999999998888774433
Q ss_pred EEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhh---HHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHH
Q 037567 81 EFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISF---WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRT 157 (374)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~---~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~ 157 (374)
........ ......++|.++|++++..-.... ...+....+++||+||||+-.- +....+..
T Consensus 243 ~~~n~i~~------~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~---------~~~~~I~d 307 (875)
T COG4096 243 TKMNKIED------KKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIY---------SEWSSILD 307 (875)
T ss_pred cceeeeec------ccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHH---------hhhHHHHH
Confidence 22211111 111125799999999886544332 1233445689999999997432 33445555
Q ss_pred hcCCCCeeEEEeecCcccHHHHHHhc-CCC-----------------CCeEEEe-ccCCCceeE----------------
Q 037567 158 FLLGVPFVALTATATEKVRIDIINSL-KLK-----------------NPYVTIA-SFDRKNLFY---------------- 202 (374)
Q Consensus 158 ~~~~~~~i~~SaT~~~~~~~~~~~~~-~~~-----------------~~~~~~~-~~~~~~~~~---------------- 202 (374)
.+. ...+++||||......+....+ +.+ +..+... ......+.+
T Consensus 308 YFd-A~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~ 386 (875)
T COG4096 308 YFD-AATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDE 386 (875)
T ss_pred HHH-HHHHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCc
Confidence 543 3345569999885543333333 211 1111110 000000000
Q ss_pred EEEe-----------ecCCcchHHHHHHHHHHhhcC---CCcEEEEecchhHHHHHHHHHHHc-----CCceeeeecCCC
Q 037567 203 GVKV-----------INRGQSFVDELVQEILKSVAG---AGSIIVYCMTIKDVEEISKALKQL-----GVKAGTYHGQMG 263 (374)
Q Consensus 203 ~~~~-----------~~~~~~~~~~~~~~~~~~~~~---~~~~lVf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~ 263 (374)
.... .......+...+.+.+..... .+|+||||.+..+|+.+.+.|.+. +--+..+.|+
T Consensus 387 dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d-- 464 (875)
T COG4096 387 DDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGD-- 464 (875)
T ss_pred ccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEecc--
Confidence 0000 001112223334444443111 468999999999999999999874 2235566665
Q ss_pred hHHHHHHHHhhhcC--CeeEEEEeccccccccccCccEEEEECCCCChhHHHHhhccCCCC
Q 037567 264 SKAREEAHRLFIRD--EIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRD 322 (374)
Q Consensus 264 ~~~r~~~~~~f~~g--~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~ 322 (374)
.++-++.+..|... --.|.++++++.+|+|+|.+-.+++.....|...|.||+||+-|.
T Consensus 465 ~~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 465 AEQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred chhhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 44455566667663 246888999999999999999999999999999999999999995
No 109
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=8.1e-24 Score=191.75 Aligned_cols=307 Identities=15% Similarity=0.149 Sum_probs=212.9
Q ss_pred CCchhHHHHHHHHHc----CCCEEEEccCCCCch---hhhhcccccc---CCcEEEEcchHHHHHHHHHHHHHcCCceE-
Q 037567 13 VFRPYQKDVIQRIIE----KRDCLVVMATGSGKS---LCYQLPPLVT---GKTALVVSPLISLMQDQVMSLKQRGINAE- 81 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~----~~~~l~~a~tGsGKT---~~~~l~~~~~---~~~~lil~P~~~l~~q~~~~~~~~~~~~~- 81 (374)
.+.+||.++++.+++ +...|+...+|.||| ++|+.++.++ .+++|||||. .+..||..++..+.....
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p~~rv 283 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWPPFRV 283 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCcceEE
Confidence 689999999998875 567899999999999 4454444444 4789999999 799999999999976554
Q ss_pred -EcCCCCCchh--------h----hhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHH
Q 037567 82 -FLGSAQTDSS--------V----QTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLE 148 (374)
Q Consensus 82 -~~~~~~~~~~--------~----~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~ 148 (374)
++++...... . ..........|+++|++.+...- ..+....|+++|+||.|.+.+.+.
T Consensus 284 ~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~----d~l~~~~W~y~ILDEGH~IrNpns----- 354 (923)
T KOG0387|consen 284 FILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQG----DDLLGILWDYVILDEGHRIRNPNS----- 354 (923)
T ss_pred EEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccC----cccccccccEEEecCcccccCCcc-----
Confidence 4444333210 0 11111233479999998874431 234446789999999999987663
Q ss_pred HHHHHHHHHhcCCCCeeEEEeecCcccHHHHHHhcCCCCC----------------eEEEec------------------
Q 037567 149 YKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNP----------------YVTIAS------------------ 194 (374)
Q Consensus 149 ~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~----------------~~~~~~------------------ 194 (374)
.+...+..++..++|.+|+||-.+...+++..+....| +..-..
T Consensus 355 --~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~L 432 (923)
T KOG0387|consen 355 --KISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVAL 432 (923)
T ss_pred --HHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHH
Confidence 45555555667889999999877765554432221100 000000
Q ss_pred ----------------------------------------------------------------------cCCCceeEEE
Q 037567 195 ----------------------------------------------------------------------FDRKNLFYGV 204 (374)
Q Consensus 195 ----------------------------------------------------------------------~~~~~~~~~~ 204 (374)
.+.+.+....
T Consensus 433 r~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~ 512 (923)
T KOG0387|consen 433 RDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRR 512 (923)
T ss_pred HHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCc
Confidence 0000000000
Q ss_pred ---EeecCC------cchHHHHHHH-HHHhhcCCCcEEEEecchhHHHHHHHHHH-HcCCceeeeecCCChHHHHHHHHh
Q 037567 205 ---KVINRG------QSFVDELVQE-ILKSVAGAGSIIVYCMTIKDVEEISKALK-QLGVKAGTYHGQMGSKAREEAHRL 273 (374)
Q Consensus 205 ---~~~~~~------~~~~~~~~~~-~~~~~~~~~~~lVf~~~~~~~~~l~~~l~-~~~~~~~~~~~~~~~~~r~~~~~~ 273 (374)
.....+ ..-...++.. +.....++.++++|..++....-+...|. ..++....+.|.++...|+.++.+
T Consensus 513 ~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~ 592 (923)
T KOG0387|consen 513 DEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDR 592 (923)
T ss_pred ccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHh
Confidence 000000 0111222222 23334567899999999999999999998 589999999999999999999999
Q ss_pred hhcCC-ee-EEEEeccccccccccCccEEEEECCCCChhHHHHhhccCCCCCCceEEEEE
Q 037567 274 FIRDE-IR-VMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLY 331 (374)
Q Consensus 274 f~~g~-~~-ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~ 331 (374)
|+++. +. .|++|.+.+-|+|+..++-||+|||.|++..-.|..-||.|.||..-|.+|
T Consensus 593 Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VY 652 (923)
T KOG0387|consen 593 FNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVY 652 (923)
T ss_pred hcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEE
Confidence 99875 34 466888999999999999999999999999999999999999997665554
No 110
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=3.6e-24 Score=184.76 Aligned_cols=288 Identities=18% Similarity=0.158 Sum_probs=195.6
Q ss_pred CCchhHHHHHHHHHcC---CCEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHHc----CCceEEcCC
Q 037567 13 VFRPYQKDVIQRIIEK---RDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQR----GINAEFLGS 85 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~---~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~----~~~~~~~~~ 85 (374)
.+||||++++..++-+ ++.+++.|||+|||+...-++..-.+++|++|.+...+.||..+++.| ...++.+++
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTs 381 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTS 381 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeeecccEEEEecCccCHHHHHHHHHhhcccCccceEEeec
Confidence 6899999999999853 578999999999999888777778899999999999999999999887 233444444
Q ss_pred CCCchhhhhhhhcCCeeEEEEcCcccccCchhhHH------HHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhc
Q 037567 86 AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS------KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFL 159 (374)
Q Consensus 86 ~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~------~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~ 159 (374)
.... ....++.|+|+|+.++...-.+.+. .+....|.++++||+|.+.. ....+.....
T Consensus 382 d~Ke------~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA---------~MFRRVlsiv 446 (776)
T KOG1123|consen 382 DAKE------RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPA---------KMFRRVLSIV 446 (776)
T ss_pred cccc------cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchH---------HHHHHHHHHH
Confidence 3222 1234568999999988766544332 33456799999999998865 2223333333
Q ss_pred CCCCeeEEEeecCcccHHHHHHhcC-CCCCeEEEecc-----------------C------------CCceeEEEEeecC
Q 037567 160 LGVPFVALTATATEKVRIDIINSLK-LKNPYVTIASF-----------------D------------RKNLFYGVKVINR 209 (374)
Q Consensus 160 ~~~~~i~~SaT~~~~~~~~~~~~~~-~~~~~~~~~~~-----------------~------------~~~~~~~~~~~~~ 209 (374)
.....+++|||+-.++.+ ...+. +-.|....... . ..+.....-...-
T Consensus 447 ~aHcKLGLTATLvREDdK--I~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvM 524 (776)
T KOG1123|consen 447 QAHCKLGLTATLVREDDK--ITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVM 524 (776)
T ss_pred HHHhhccceeEEeecccc--ccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeec
Confidence 344568999998877654 11111 11111111100 0 0000000001111
Q ss_pred CcchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcC-CeeEEEEeccc
Q 037567 210 GQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRD-EIRVMVATMAF 288 (374)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~ilv~t~~~ 288 (374)
+.......-..+..+...+.++|||..++-.....+-.|.+ -+++|.++..+|.++++.|+.+ .+..++.+...
T Consensus 525 NP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVg 599 (776)
T KOG1123|consen 525 NPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVG 599 (776)
T ss_pred CcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccceEEEeecc
Confidence 11222222222333344789999999987777666665533 3789999999999999999976 57889999999
Q ss_pred cccccccCccEEEEECCC-CChhHHHHhhccCCCC
Q 037567 289 GMGIDKPDVRHVIHYGCP-KTLESYYQESGRCGRD 322 (374)
Q Consensus 289 ~~G~d~~~~~~vi~~~~p-~s~~~~~Q~~GR~~R~ 322 (374)
.+++|+|..+++|..+.- -|..+-.||.||..|.
T Consensus 600 DtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRA 634 (776)
T KOG1123|consen 600 DTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRA 634 (776)
T ss_pred CccccCCcccEEEEEcccccchHHHHHHHHHHHHH
Confidence 999999999999976543 4678889999998885
No 111
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.92 E-value=1.2e-24 Score=179.17 Aligned_cols=166 Identities=20% Similarity=0.260 Sum_probs=123.2
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc--------cCCcEEEEcchHHHHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV--------TGKTALVVSPLISLMQDQVMSL 73 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~--------~~~~~lil~P~~~l~~q~~~~~ 73 (374)
.+.+.+ +|+..|+++|.++++.+.+++++++.+|||+|||++|+++++. .+.+++|++|+++|+.|+...+
T Consensus 11 ~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~ 89 (203)
T cd00268 11 LRGIYA-LGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVA 89 (203)
T ss_pred HHHHHH-cCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHH
Confidence 456677 7999999999999999999999999999999999998877653 2458999999999999999888
Q ss_pred HHc----CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHH
Q 037567 74 KQR----GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEY 149 (374)
Q Consensus 74 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~ 149 (374)
..+ +.......++....... ....++++|+|+||+++...+... ...+.+++++|+||+|.+.+.+. .
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~l~~lIvDE~h~~~~~~~--~--- 161 (203)
T cd00268 90 RKLGKHTNLKVVVIYGGTSIDKQI-RKLKRGPHIVVATPGRLLDLLERG--KLDLSKVKYLVLDEADRMLDMGF--E--- 161 (203)
T ss_pred HHHhccCCceEEEEECCCCHHHHH-HHhcCCCCEEEEChHHHHHHHHcC--CCChhhCCEEEEeChHHhhccCh--H---
Confidence 776 44444454444332222 223356899999999887765542 24556789999999999875432 2
Q ss_pred HHHHHHHHhc-CCCCeeEEEeecCcccH
Q 037567 150 KQLDKLRTFL-LGVPFVALTATATEKVR 176 (374)
Q Consensus 150 ~~~~~~~~~~-~~~~~i~~SaT~~~~~~ 176 (374)
..+..+...+ .+.+++++|||+++...
T Consensus 162 ~~~~~~~~~l~~~~~~~~~SAT~~~~~~ 189 (203)
T cd00268 162 DQIREILKLLPKDRQTLLFSATMPKEVR 189 (203)
T ss_pred HHHHHHHHhCCcccEEEEEeccCCHHHH
Confidence 2222222222 36889999999997654
No 112
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.92 E-value=2.4e-22 Score=188.92 Aligned_cols=124 Identities=27% Similarity=0.383 Sum_probs=113.4
Q ss_pred cchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccc
Q 037567 211 QSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGM 290 (374)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~ 290 (374)
......++.++.+....+.+++|||+++..++.+++.|.+.|+++..+||+++..+|.+++..|+.|+++|+|||+.+++
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~r 504 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLRE 504 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcC
Confidence 34556777777777778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCccEEEEEC-----CCCChhHHHHhhccCCCCCCceEEEEEeecc
Q 037567 291 GIDKPDVRHVIHYG-----CPKTLESYYQESGRCGRDGIASVCWLYYARS 335 (374)
Q Consensus 291 G~d~~~~~~vi~~~-----~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 335 (374)
|+|+|++++|++++ .|.+...|+||+||+||. ..|.++++.+..
T Consensus 505 GfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~ 553 (655)
T TIGR00631 505 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKI 553 (655)
T ss_pred CeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCC
Confidence 99999999999887 788999999999999997 578888888764
No 113
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.91 E-value=9.2e-23 Score=189.97 Aligned_cols=285 Identities=20% Similarity=0.246 Sum_probs=195.3
Q ss_pred hHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcc---ccccCCcEEEEcchHHHHHHHHHHHHHcC--
Q 037567 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP---PLVTGKTALVVSPLISLMQDQVMSLKQRG-- 77 (374)
Q Consensus 3 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~---~~~~~~~~lil~P~~~l~~q~~~~~~~~~-- 77 (374)
+.|++..|+ +|+..|.-....+..|+++-+.||||.|||...++. ...+++++++++||..|+.|+.+.++++.
T Consensus 73 ~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~ 151 (1187)
T COG1110 73 EFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAED 151 (1187)
T ss_pred HHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhh
Confidence 457777888 699999999999999999999999999999543332 33468999999999999999999999874
Q ss_pred ---CceEE-cCCCCCc---hhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHH--
Q 037567 78 ---INAEF-LGSAQTD---SSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLE-- 148 (374)
Q Consensus 78 ---~~~~~-~~~~~~~---~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~-- 148 (374)
..+.+ .++..+. .+.......++++|+|+|..-|. .....+...+++++++|+++.+...+......
T Consensus 152 ~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~----k~~e~L~~~kFdfifVDDVDA~LkaskNvDriL~ 227 (1187)
T COG1110 152 AGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLS----KRFEELSKLKFDFIFVDDVDAILKASKNVDRLLR 227 (1187)
T ss_pred cCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHH----hhHHHhcccCCCEEEEccHHHHHhccccHHHHHH
Confidence 33333 2222222 23345566789999999976442 33445555679999999999986422111000
Q ss_pred ---------------------------HHHHHHHH---------HhcCCCCeeEEEeecCcccH--HHHHHhcCCCCCeE
Q 037567 149 ---------------------------YKQLDKLR---------TFLLGVPFVALTATATEKVR--IDIINSLKLKNPYV 190 (374)
Q Consensus 149 ---------------------------~~~~~~~~---------~~~~~~~~i~~SaT~~~~~~--~~~~~~~~~~~~~~ 190 (374)
...+.+.. ........++.|||..+... .-+...++......
T Consensus 228 LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFevG~~ 307 (1187)
T COG1110 228 LLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEVGSG 307 (1187)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCccCcc
Confidence 01111111 12234678999999877542 22344444443321
Q ss_pred EEeccCCCceeEEEEeecCCcchHHHHHHHHHHhhcCCCcEEEEecc---hhHHHHHHHHHHHcCCceeeeecCCChHHH
Q 037567 191 TIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT---IKDVEEISKALKQLGVKAGTYHGQMGSKAR 267 (374)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r 267 (374)
... ..|+. +..... ....-+.++++.+ +..+|||++. .+.++.+++.|+.+|+++..+|++ +
T Consensus 308 ~~~---LRNIv---D~y~~~--~~~e~~~elvk~l--G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~ 372 (1187)
T COG1110 308 GEG---LRNIV---DIYVES--ESLEKVVELVKKL--GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----K 372 (1187)
T ss_pred chh---hhhee---eeeccC--ccHHHHHHHHHHh--CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----c
Confidence 111 11211 111111 2233344455554 4467999999 999999999999999999999984 2
Q ss_pred HHHHHhhhcCCeeEEEEec----cccccccccC-ccEEEEECCCC
Q 037567 268 EEAHRLFIRDEIRVMVATM----AFGMGIDKPD-VRHVIHYGCPK 307 (374)
Q Consensus 268 ~~~~~~f~~g~~~ilv~t~----~~~~G~d~~~-~~~vi~~~~p~ 307 (374)
...++.|..|++++||++. .+-+|+|+|. ++.+|+++.|.
T Consensus 373 ~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 373 EEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred hhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 6778999999999999775 7789999998 88999999994
No 114
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=3.6e-23 Score=184.01 Aligned_cols=315 Identities=17% Similarity=0.198 Sum_probs=218.1
Q ss_pred HhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhh---hc--cccccCCcEEEEcchHHHHHHHHHHHH-HcCCc
Q 037567 6 KKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCY---QL--PPLVTGKTALVVSPLISLMQDQVMSLK-QRGIN 79 (374)
Q Consensus 6 ~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~---~l--~~~~~~~~~lil~P~~~l~~q~~~~~~-~~~~~ 79 (374)
.+....-+.+++-.+.+.++..+..++|.|.||||||.-. +. .....++++=+.-|+|..+-.++..+. ..|.+
T Consensus 258 ee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvk 337 (902)
T KOG0923|consen 258 EEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVK 337 (902)
T ss_pred HHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcc
Confidence 3334455677888899999999999999999999999531 11 111234558888899988877766654 34444
Q ss_pred eEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhc
Q 037567 80 AEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFL 159 (374)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~ 159 (374)
..--.+.....+.. .....-+-++|.++|++ .+.....+.+++++||||||. ........+..+..+..+.
T Consensus 338 LG~eVGYsIRFEdc---TSekTvlKYMTDGmLlR---EfL~epdLasYSViiiDEAHE---RTL~TDILfgLvKDIar~R 408 (902)
T KOG0923|consen 338 LGHEVGYSIRFEDC---TSEKTVLKYMTDGMLLR---EFLSEPDLASYSVIIVDEAHE---RTLHTDILFGLVKDIARFR 408 (902)
T ss_pred cccccceEEEeccc---cCcceeeeeecchhHHH---HHhccccccceeEEEeehhhh---hhhhhhHHHHHHHHHHhhC
Confidence 33222221111111 11234577899997754 445566778899999999994 4455667778888898888
Q ss_pred CCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEEEee-cCCcchHHHHHHHHHH--hhcCCCcEEEEec
Q 037567 160 LGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVI-NRGQSFVDELVQEILK--SVAGAGSIIVYCM 236 (374)
Q Consensus 160 ~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~lVf~~ 236 (374)
++.+.+.+|||+..... ..++. .-++...+. .+ ......+. .....++...+..+++ ...+.+.+|||..
T Consensus 409 pdLKllIsSAT~DAekF---S~fFD-dapIF~iPG-RR--yPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFlt 481 (902)
T KOG0923|consen 409 PDLKLLISSATMDAEKF---SAFFD-DAPIFRIPG-RR--YPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLT 481 (902)
T ss_pred CcceEEeeccccCHHHH---HHhcc-CCcEEeccC-cc--cceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEec
Confidence 99999999999987543 33332 222222221 11 11111111 1223345555555533 2346789999999
Q ss_pred chhHHHHHHHHHHHc---------CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECC--
Q 037567 237 TIKDVEEISKALKQL---------GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGC-- 305 (374)
Q Consensus 237 ~~~~~~~l~~~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~-- 305 (374)
..++.+...+.|++. .+-+.++|+.++.+....+.+.--.|-.+|+++|+++++++.++++..||+.+.
T Consensus 482 GQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K 561 (902)
T KOG0923|consen 482 GQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVK 561 (902)
T ss_pred cHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCcccc
Confidence 999998888887763 234778999999999999988888888999999999999999999999996553
Q ss_pred ----------------CCChhHHHHhhccCCCCCCceEEEEEeeccCC
Q 037567 306 ----------------PKTLESYYQESGRCGRDGIASVCWLYYARSNF 337 (374)
Q Consensus 306 ----------------p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 337 (374)
|.|...-.||.|||||.| +|.|+-+|+.-.+
T Consensus 562 ~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~aY 608 (902)
T KOG0923|consen 562 QNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAWAY 608 (902)
T ss_pred ccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechhhh
Confidence 347788899999999987 8899999985443
No 115
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.90 E-value=5.5e-24 Score=170.18 Aligned_cols=155 Identities=27% Similarity=0.357 Sum_probs=115.0
Q ss_pred chhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc---c--CCcEEEEcchHHHHHHHHHHHHHcCC----ceEEcCC
Q 037567 15 RPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV---T--GKTALVVSPLISLMQDQVMSLKQRGI----NAEFLGS 85 (374)
Q Consensus 15 ~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~---~--~~~~lil~P~~~l~~q~~~~~~~~~~----~~~~~~~ 85 (374)
+|+|.++++.+.+++++++.||||+|||++++++++. + ..++++++|+++|++|..+.+..+.. ....+.+
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHG 80 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEEST
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccc
Confidence 6899999999999999999999999999998877654 2 34899999999999999999987744 4455555
Q ss_pred CCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCee
Q 037567 86 AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV 165 (374)
Q Consensus 86 ~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 165 (374)
+............++++|+|+||+++....... .....++++||+||+|.+..++ +...+..+.......++.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~--~~~~~~~~~iViDE~h~l~~~~--~~~~~~~i~~~~~~~~~~~~i 156 (169)
T PF00270_consen 81 GQSISEDQREVLSNQADILVTTPEQLLDLISNG--KINISRLSLIVIDEAHHLSDET--FRAMLKSILRRLKRFKNIQII 156 (169)
T ss_dssp TSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTT--SSTGTTESEEEEETHHHHHHTT--HHHHHHHHHHHSHTTTTSEEE
T ss_pred cccccccccccccccccccccCcchhhcccccc--ccccccceeeccCccccccccc--HHHHHHHHHHHhcCCCCCcEE
Confidence 444332333333556899999999987765551 1234558999999999998753 233334444444444568899
Q ss_pred EEEeecCc
Q 037567 166 ALTATATE 173 (374)
Q Consensus 166 ~~SaT~~~ 173 (374)
++|||++.
T Consensus 157 ~~SAT~~~ 164 (169)
T PF00270_consen 157 LLSATLPS 164 (169)
T ss_dssp EEESSSTH
T ss_pred EEeeCCCh
Confidence 99999983
No 116
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.90 E-value=4.9e-22 Score=184.26 Aligned_cols=306 Identities=19% Similarity=0.169 Sum_probs=195.1
Q ss_pred CCchhHHHHHHHHHcC----------CCEEEEccCCCCchhhh---hccccc--cC-----CcEEEEcchHHHHHHHHHH
Q 037567 13 VFRPYQKDVIQRIIEK----------RDCLVVMATGSGKSLCY---QLPPLV--TG-----KTALVVSPLISLMQDQVMS 72 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~----------~~~l~~a~tGsGKT~~~---~l~~~~--~~-----~~~lil~P~~~l~~q~~~~ 72 (374)
.++|||.+++..+++. ..+|+...+|+|||+.. +...+. .+ .+.|||+|. .|+..|.++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHH
Confidence 5899999999998751 24677777999999542 233333 34 789999999 799999999
Q ss_pred HHHcCCc--eE--EcCCCCCc-hh-----hhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhccc
Q 037567 73 LKQRGIN--AE--FLGSAQTD-SS-----VQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWG 142 (374)
Q Consensus 73 ~~~~~~~--~~--~~~~~~~~-~~-----~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~ 142 (374)
|.++... .. .+.+.... .. .......-..-+++.+++.+. .....+....++++|+||.|.+.+..
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~----~~~~~il~~~~glLVcDEGHrlkN~~ 392 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETAS----DYCRKILLIRPGLLVCDEGHRLKNSD 392 (776)
T ss_pred HHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHH----HHHHHHhcCCCCeEEECCCCCccchh
Confidence 9998543 22 12221111 00 000111122356677777664 33355667789999999999987633
Q ss_pred CcchHHHHHHHHHHHhcCCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEecc---------------------C-----
Q 037567 143 HDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTIASF---------------------D----- 196 (374)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~----- 196 (374)
..+...+..+.-.+.|++|+||-.+...++.+.+.+..|....... +
T Consensus 393 -------s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~ 465 (776)
T KOG0390|consen 393 -------SLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREE 465 (776)
T ss_pred -------hHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHH
Confidence 3444455555677899999999999887766665544332111000 0
Q ss_pred ------------------------CCceeEEEEeecCCcchHHHHHHHHHH-------------------hh--------
Q 037567 197 ------------------------RKNLFYGVKVINRGQSFVDELVQEILK-------------------SV-------- 225 (374)
Q Consensus 197 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~-------- 225 (374)
.+.....+.+..... .-..+...++. ..
T Consensus 466 rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~-~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~ 544 (776)
T KOG0390|consen 466 RLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTP-IQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLL 544 (776)
T ss_pred HHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcH-HHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhc
Confidence 000000000111000 00000000000 00
Q ss_pred ------------------------------------------------cCCCcEEEEecchhHHHHHHHHHHHcCCceee
Q 037567 226 ------------------------------------------------AGAGSIIVYCMTIKDVEEISKALKQLGVKAGT 257 (374)
Q Consensus 226 ------------------------------------------------~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~ 257 (374)
....++.+..|-....+.+.+.++-+|..+..
T Consensus 545 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~r 624 (776)
T KOG0390|consen 545 LCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLR 624 (776)
T ss_pred ccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEE
Confidence 00012333334444555555555557999999
Q ss_pred eecCCChHHHHHHHHhhhcCC--eeE-EEEeccccccccccCccEEEEECCCCChhHHHHhhccCCCCCCceEEEEE
Q 037567 258 YHGQMGSKAREEAHRLFIRDE--IRV-MVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLY 331 (374)
Q Consensus 258 ~~~~~~~~~r~~~~~~f~~g~--~~i-lv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~ 331 (374)
++|.++..+|+.+++.|++.. ..| |.++.+.++|+|+-+.+-+|.+|+.||+..-.|+++|+.|.||...|++|
T Consensus 625 LdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 625 LDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred EcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 999999999999999999853 234 45777999999999999999999999999999999999999999888765
No 117
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=1.9e-22 Score=179.97 Aligned_cols=333 Identities=16% Similarity=0.159 Sum_probs=223.5
Q ss_pred cCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccc----cccCCcEEEEcchHHHHHHHHHHHHH-cCCceEEc
Q 037567 9 FGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPP----LVTGKTALVVSPLISLMQDQVMSLKQ-RGINAEFL 83 (374)
Q Consensus 9 ~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~----~~~~~~~lil~P~~~l~~q~~~~~~~-~~~~~~~~ 83 (374)
-.+-+....+.+.+..+-.++-+++.+.||||||.-..--+ ...+.-+-+.-|++..+-.+++.+.. .|....-.
T Consensus 352 rq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~ 431 (1042)
T KOG0924|consen 352 RQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDT 431 (1042)
T ss_pred HhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccc
Confidence 34445556677777777778889999999999995322111 22355667778999888887777653 33332221
Q ss_pred CCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCC
Q 037567 84 GSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVP 163 (374)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (374)
.+....-+. -......|-++|.+-|+. .......+..+++||+||||. ........+..+........+.+
T Consensus 432 VGYsIRFEd---vT~~~T~IkymTDGiLLr---EsL~d~~L~kYSviImDEAHE---RslNtDilfGllk~~larRrdlK 502 (1042)
T KOG0924|consen 432 VGYSIRFED---VTSEDTKIKYMTDGILLR---ESLKDRDLDKYSVIIMDEAHE---RSLNTDILFGLLKKVLARRRDLK 502 (1042)
T ss_pred cceEEEeee---cCCCceeEEEeccchHHH---HHhhhhhhhheeEEEechhhh---cccchHHHHHHHHHHHHhhccce
Confidence 111111111 111234677889886543 444556678889999999995 44555666777888888888999
Q ss_pred eeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEEE-eecCCcchHHHHHHHHHHh--hcCCCcEEEEecchhH
Q 037567 164 FVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVK-VINRGQSFVDELVQEILKS--VAGAGSIIVYCMTIKD 240 (374)
Q Consensus 164 ~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~lVf~~~~~~ 240 (374)
+|.+|||+... .+.++++.-+. ...+. ........ .......++...+...+.- ....+.+|||....+.
T Consensus 503 liVtSATm~a~---kf~nfFgn~p~-f~IpG---RTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqed 575 (1042)
T KOG0924|consen 503 LIVTSATMDAQ---KFSNFFGNCPQ-FTIPG---RTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQED 575 (1042)
T ss_pred EEEeeccccHH---HHHHHhCCCce-eeecC---CccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcc
Confidence 99999999754 45666662222 11111 11111111 1122233344444443221 1245889999998887
Q ss_pred HHHHHHHHHHc----------CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECC-----
Q 037567 241 VEEISKALKQL----------GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGC----- 305 (374)
Q Consensus 241 ~~~l~~~l~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~----- 305 (374)
.+-.+..+++. ++.+..+++-++..-..++.+.-..|-.+++|+|+++++++.+|++.+||..++
T Consensus 576 iE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kv 655 (1042)
T KOG0924|consen 576 IECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKV 655 (1042)
T ss_pred hhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeee
Confidence 76666555442 567889999999988888888777888999999999999999999999997664
Q ss_pred -------------CCChhHHHHhhccCCCCCCceEEEEEeeccCCCcccceeccccchHHHHHHHHHH
Q 037567 306 -------------PKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360 (374)
Q Consensus 306 -------------p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 360 (374)
|.|-.+-.||.|||||.| +|.||-+|+.+ .....++....++.++-++--..
T Consensus 656 yn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~--ay~~eml~stvPEIqRTNl~nvV 720 (1042)
T KOG0924|consen 656 YNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED--AYKNEMLPSTVPEIQRTNLSNVV 720 (1042)
T ss_pred cccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh--HHHhhcccCCCchhhhcchhhHH
Confidence 347788899999999987 89999999886 34667788888888876654333
No 118
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=1.2e-21 Score=179.97 Aligned_cols=323 Identities=17% Similarity=0.161 Sum_probs=220.5
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc---cCCcEEEEcchHHHHHHHHHHHHH---
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV---TGKTALVVSPLISLMQDQVMSLKQ--- 75 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~---~~~~~lil~P~~~l~~q~~~~~~~--- 75 (374)
.++.++.+|+. |++.|.-+.-.+++|+ +..+.||+|||+++.+++.. .+..|.+++|+.-|+.+-++++..
T Consensus 68 REa~~R~lg~r-~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~ 144 (764)
T PRK12326 68 REAAERTLGLR-PFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYE 144 (764)
T ss_pred HHHHHHHcCCC-cchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHH
Confidence 45677788885 8999999998888775 88999999999988877654 588999999999999998888764
Q ss_pred -cCCceEEcCCCCCchhhhhhhhcCCeeEEEEcCccccc-Cchhh----HHHHHhcCccEEEEeccchhh-cc-------
Q 037567 76 -RGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACI-IPISF----WSKLLKAGVCLFAVDEAHCIS-EW------- 141 (374)
Q Consensus 76 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~-~~~~~----~~~~~~~~~~~vviDE~h~~~-~~------- 141 (374)
+|+.+....+..+... ......++|+++|...+.. +++.. ........+.+.||||++.+. +.
T Consensus 145 ~LGLsvg~i~~~~~~~e---rr~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiI 221 (764)
T PRK12326 145 ALGLTVGWITEESTPEE---RRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVL 221 (764)
T ss_pred hcCCEEEEECCCCCHHH---HHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceee
Confidence 4888887766544332 2223457999999986532 22221 122334568899999999874 10
Q ss_pred -cCcc-hHHHHHHHHHHHhcC-----------------------------------------------------------
Q 037567 142 -GHDF-RLEYKQLDKLRTFLL----------------------------------------------------------- 160 (374)
Q Consensus 142 -~~~~-~~~~~~~~~~~~~~~----------------------------------------------------------- 160 (374)
|... ...+..+..+...+.
T Consensus 222 Sg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d 301 (764)
T PRK12326 222 AGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRD 301 (764)
T ss_pred eCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcC
Confidence 0000 000000000000000
Q ss_pred ------------------------------------------------------------CCCeeEEEeecCcccHHHHH
Q 037567 161 ------------------------------------------------------------GVPFVALTATATEKVRIDII 180 (374)
Q Consensus 161 ------------------------------------------------------------~~~~i~~SaT~~~~~~~~~~ 180 (374)
-.++.+||+|...... .+.
T Consensus 302 ~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~-Ef~ 380 (764)
T PRK12326 302 VHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGE-QLR 380 (764)
T ss_pred CcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHH-HHH
Confidence 0125677777654332 445
Q ss_pred HhcCCCCCeEEEeccCCCcee--EEEEeecCCcchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeee
Q 037567 181 NSLKLKNPYVTIASFDRKNLF--YGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTY 258 (374)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~ 258 (374)
..+++. +...+.+.+... .....+.....+...++.++.+....+.++||.+.+.+..+.+++.|.+.|++...+
T Consensus 381 ~iY~l~---Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vL 457 (764)
T PRK12326 381 QFYDLG---VSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVL 457 (764)
T ss_pred HHhCCc---EEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceee
Confidence 545443 222222222222 222344455566778888888887899999999999999999999999999999999
Q ss_pred ecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCc---------------cEEEEECCCCChhHHHHhhccCCCCC
Q 037567 259 HGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV---------------RHVIHYGCPKTLESYYQESGRCGRDG 323 (374)
Q Consensus 259 ~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~---------------~~vi~~~~p~s~~~~~Q~~GR~~R~~ 323 (374)
+......+-..+.+.=+ .-.|.|+|+++++|.|+.-- -+||....+.|..--.|..||+||.|
T Consensus 458 NAk~~~~EA~IIa~AG~--~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQG 535 (764)
T PRK12326 458 NAKNDAEEARIIAEAGK--YGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQG 535 (764)
T ss_pred ccCchHhHHHHHHhcCC--CCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCC
Confidence 88755444333333222 23689999999999998621 26888888999999999999999999
Q ss_pred CceEEEEEeeccC
Q 037567 324 IASVCWLYYARSN 336 (374)
Q Consensus 324 ~~g~~~~~~~~~~ 336 (374)
.+|.+-.|++-+|
T Consensus 536 DpGss~f~lSleD 548 (764)
T PRK12326 536 DPGSSVFFVSLED 548 (764)
T ss_pred CCCceeEEEEcch
Confidence 9999988888766
No 119
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.89 E-value=3.2e-21 Score=182.81 Aligned_cols=122 Identities=29% Similarity=0.402 Sum_probs=110.8
Q ss_pred chHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEecccccc
Q 037567 212 SFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMG 291 (374)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G 291 (374)
.....++.++.+....+.+++|||++...++.+++.|.+.|+++..+||+++..+|..++..|+.|++.|+|+|+.+++|
T Consensus 430 ~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rG 509 (652)
T PRK05298 430 GQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREG 509 (652)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCC
Confidence 33566777776666678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccEEEEECC-----CCChhHHHHhhccCCCCCCceEEEEEeec
Q 037567 292 IDKPDVRHVIHYGC-----PKTLESYYQESGRCGRDGIASVCWLYYAR 334 (374)
Q Consensus 292 ~d~~~~~~vi~~~~-----p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 334 (374)
+|+|++++|++++. |.+...|+||+||+||. ..|.++.+++.
T Consensus 510 fdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~ 556 (652)
T PRK05298 510 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADK 556 (652)
T ss_pred ccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecC
Confidence 99999999998875 77999999999999996 68999988883
No 120
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.89 E-value=3.2e-21 Score=189.13 Aligned_cols=172 Identities=15% Similarity=0.131 Sum_probs=107.5
Q ss_pred CeeEEEeecCcc-cHHHHHHhcCCCCCeEEEe--c-cC-CCceeEEE--Eeec----CCcchHHHHHHHHHHhh-cCCCc
Q 037567 163 PFVALTATATEK-VRIDIINSLKLKNPYVTIA--S-FD-RKNLFYGV--KVIN----RGQSFVDELVQEILKSV-AGAGS 230 (374)
Q Consensus 163 ~~i~~SaT~~~~-~~~~~~~~~~~~~~~~~~~--~-~~-~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~-~~~~~ 230 (374)
.+|++|||+... ....+...+|+.+...... + ++ ..+....+ .... +.......+...+.+-. ...++
T Consensus 597 ~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~ 676 (850)
T TIGR01407 597 SLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPK 676 (850)
T ss_pred eEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCC
Confidence 479999999854 2335667788765432211 1 11 11111111 1110 11122223333332221 24679
Q ss_pred EEEEecchhHHHHHHHHHHHcC--CceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCcc--EEEEECCC
Q 037567 231 IIVYCMTIKDVEEISKALKQLG--VKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR--HVIHYGCP 306 (374)
Q Consensus 231 ~lVf~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~--~vi~~~~p 306 (374)
+|||+++.+.++.+++.|.... .....+..+.. .+|.++++.|++++..||++|+..++|+|+|+.. .||..+.|
T Consensus 677 ~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LP 755 (850)
T TIGR01407 677 ILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLP 755 (850)
T ss_pred EEEEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCC
Confidence 9999999999999999997621 11222333333 5788999999999999999999999999999954 57777776
Q ss_pred C------------------------------ChhHHHHhhccCCCCCCceEEEEEeecc
Q 037567 307 K------------------------------TLESYYQESGRCGRDGIASVCWLYYARS 335 (374)
Q Consensus 307 ~------------------------------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 335 (374)
. ....+.|.+||.-|..++..+++++++.
T Consensus 756 f~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 756 FANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccc
Confidence 4 1245689999999987655556665554
No 121
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.88 E-value=3.9e-22 Score=184.30 Aligned_cols=155 Identities=18% Similarity=0.199 Sum_probs=107.2
Q ss_pred CCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhc---cccc--cCCcEEEEcchHHHHHHHHHHHHHcC-CceE--
Q 037567 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQL---PPLV--TGKTALVVSPLISLMQDQVMSLKQRG-INAE-- 81 (374)
Q Consensus 10 ~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l---~~~~--~~~~~lil~P~~~l~~q~~~~~~~~~-~~~~-- 81 (374)
+| .|..||.+.+..+-+++..+++|||.+|||++-.- ..++ ....+++++|+++|++|+...+...- ....
T Consensus 509 dF-~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~r 587 (1330)
T KOG0949|consen 509 DF-CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLR 587 (1330)
T ss_pred cc-CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCcccc
Confidence 34 37889999999999999999999999999965221 2232 36678999999999999988876431 2111
Q ss_pred --EcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchh-hHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHh
Q 037567 82 --FLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPIS-FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTF 158 (374)
Q Consensus 82 --~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~-~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~ 158 (374)
...+..+.+.. ...-+|.|+|+-|+-+..++.+ .........++++|+||+|.+.+... ..+.+..-.
T Consensus 588 g~sl~g~ltqEYs---inp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed------~l~~Eqll~ 658 (1330)
T KOG0949|consen 588 GVSLLGDLTQEYS---INPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEED------GLLWEQLLL 658 (1330)
T ss_pred chhhHhhhhHHhc---CCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhcccccc------chHHHHHHH
Confidence 11111122111 1234689999999988777665 34455667899999999999876332 223333334
Q ss_pred cCCCCeeEEEeecCcc
Q 037567 159 LLGVPFVALTATATEK 174 (374)
Q Consensus 159 ~~~~~~i~~SaT~~~~ 174 (374)
+..++++++|||..+.
T Consensus 659 li~CP~L~LSATigN~ 674 (1330)
T KOG0949|consen 659 LIPCPFLVLSATIGNP 674 (1330)
T ss_pred hcCCCeeEEecccCCH
Confidence 4578999999996654
No 122
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.87 E-value=1.7e-21 Score=183.74 Aligned_cols=315 Identities=17% Similarity=0.154 Sum_probs=211.4
Q ss_pred CCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc------cCCcEEEEcchHHHHHHHHHHHHHc-CCceEEcCC
Q 037567 13 VFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV------TGKTALVVSPLISLMQDQVMSLKQR-GINAEFLGS 85 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~------~~~~~lil~P~~~l~~q~~~~~~~~-~~~~~~~~~ 85 (374)
..++.+.++++++.++..+++.|.||+|||.-.-.-++. ...++++--|+|--|-.+++++..- +...+...+
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VG 252 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVG 252 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeee
Confidence 456788899999999999999999999999532111221 2456888899987776666666532 222111111
Q ss_pred CCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCee
Q 037567 86 AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV 165 (374)
Q Consensus 86 ~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 165 (374)
. .............+++||.+-|++.+.. ...+.++..+|+||+|.= +.+....+..+..+....++.++|
T Consensus 253 Y---qvrl~~~~s~~t~L~fcTtGvLLr~L~~---~~~l~~vthiivDEVHER---~i~~DflLi~lk~lL~~~p~LkvI 323 (924)
T KOG0920|consen 253 Y---QVRLESKRSRETRLLFCTTGVLLRRLQS---DPTLSGVTHIIVDEVHER---SINTDFLLILLKDLLPRNPDLKVI 323 (924)
T ss_pred E---EEeeecccCCceeEEEecHHHHHHHhcc---CcccccCceeeeeeEEEc---cCCcccHHHHHHHHhhhCCCceEE
Confidence 1 1111112222358999999988766554 445678899999999953 333334445566666777899999
Q ss_pred EEEeecCcccHHHHHHhcCCCCCeEEEeccCCC------------------ceeEE------------EEe--ecCCcch
Q 037567 166 ALTATATEKVRIDIINSLKLKNPYVTIASFDRK------------------NLFYG------------VKV--INRGQSF 213 (374)
Q Consensus 166 ~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~------------~~~--~~~~~~~ 213 (374)
+||||...+. +...++ .-+.+..+....+ ..... ... .+.+...
T Consensus 324 LMSAT~dae~---fs~YF~-~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~L 399 (924)
T KOG0920|consen 324 LMSATLDAEL---FSDYFG-GCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDL 399 (924)
T ss_pred EeeeecchHH---HHHHhC-CCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHH
Confidence 9999988443 334333 2222222111100 00000 000 0011222
Q ss_pred HHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHc-------CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEec
Q 037567 214 VDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQL-------GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM 286 (374)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~ 286 (374)
..+++..+.+. ...+.+|||.+..+++..+.+.|... ..-+.++|+.++..+.+.+....-.|..+|+++|+
T Consensus 400 i~~li~~I~~~-~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTN 478 (924)
T KOG0920|consen 400 IEDLIEYIDER-EFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATN 478 (924)
T ss_pred HHHHHHhcccC-CCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhh
Confidence 33444444443 45788999999999999999999753 24467899999999999999988899999999999
Q ss_pred cccccccccCccEEEEECCCC------------------ChhHHHHhhccCCCCCCceEEEEEeeccCCCcccc
Q 037567 287 AFGMGIDKPDVRHVIHYGCPK------------------TLESYYQESGRCGRDGIASVCWLYYARSNFAKGDF 342 (374)
Q Consensus 287 ~~~~G~d~~~~~~vi~~~~p~------------------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~ 342 (374)
+++.++.++++-+||+.+.-. |..+-.||.|||||. ++|.||.+|+...++..-.
T Consensus 479 IAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~~~~~ 551 (924)
T KOG0920|consen 479 IAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYEKLML 551 (924)
T ss_pred hHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhhhhccc
Confidence 999999999999999665321 667789999999997 5899999999977655443
No 123
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=5.7e-20 Score=173.02 Aligned_cols=322 Identities=19% Similarity=0.150 Sum_probs=205.3
Q ss_pred hHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc---cCCcEEEEcchHHHHHHHHHHHHH----
Q 037567 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV---TGKTALVVSPLISLMQDQVMSLKQ---- 75 (374)
Q Consensus 3 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~---~~~~~lil~P~~~l~~q~~~~~~~---- 75 (374)
++-++.+|. .+++.|.-+--.+.+| -+..+.||+|||+++.+++.. .+..|.+++|+..||.+.++++..
T Consensus 73 Ea~~R~lGm-~~ydVQliGg~~Lh~G--~iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~ 149 (913)
T PRK13103 73 EAGKRVMGM-RHFDVQLIGGMTLHEG--KIAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEF 149 (913)
T ss_pred HHHHHHhCC-CcchhHHHhhhHhccC--ccccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 455677786 3777776665555444 499999999999998877653 688999999999999998888765
Q ss_pred cCCceEEcCCCCCchhhhhhhhcCCeeEEEEcCccc-----ccCchhhHHHHHhcCccEEEEeccchhh-cc--------
Q 037567 76 RGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKA-----CIIPISFWSKLLKAGVCLFAVDEAHCIS-EW-------- 141 (374)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l-----~~~~~~~~~~~~~~~~~~vviDE~h~~~-~~-------- 141 (374)
+|+.+.+..+........ ....++|+++|...+ .+-+..........++.++||||+|.+. +.
T Consensus 150 lGl~v~~i~~~~~~~err---~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIIS 226 (913)
T PRK13103 150 LGLSVGIVTPFQPPEEKR---AAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIIS 226 (913)
T ss_pred cCCEEEEECCCCCHHHHH---HHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeec
Confidence 478888776654433322 223379999999875 2211111233344778999999999974 11
Q ss_pred cC--cchHHHHHHHHHHHhc--------------------CCCC------------------------------------
Q 037567 142 GH--DFRLEYKQLDKLRTFL--------------------LGVP------------------------------------ 163 (374)
Q Consensus 142 ~~--~~~~~~~~~~~~~~~~--------------------~~~~------------------------------------ 163 (374)
|. .....+..+..+...+ ...+
T Consensus 227 g~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~ 306 (913)
T PRK13103 227 GQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGL 306 (913)
T ss_pred CCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHH
Confidence 00 0011111111111111 0011
Q ss_pred --------------------------------------------------------------------------------
Q 037567 164 -------------------------------------------------------------------------------- 163 (374)
Q Consensus 164 -------------------------------------------------------------------------------- 163 (374)
T Consensus 307 ~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~k 386 (913)
T PRK13103 307 LTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNK 386 (913)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcch
Confidence
Q ss_pred eeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCce--eEEEEeecCCcchHHHHHHHHHHhhcCCCcEEEEecchhHH
Q 037567 164 FVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNL--FYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241 (374)
Q Consensus 164 ~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~ 241 (374)
+.+||+|...... .+...+++. +...+.+.+.. .....++.........++.++......+.++||-+.|+...
T Consensus 387 LsGMTGTa~te~~-Ef~~iY~l~---Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~S 462 (913)
T PRK13103 387 LSGMTGTADTEAF-EFRQIYGLD---VVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETS 462 (913)
T ss_pred hccCCCCCHHHHH-HHHHHhCCC---EEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHH
Confidence 2222222221111 111111111 11111111111 11112333444566788888888778899999999999999
Q ss_pred HHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEecccccccccc--------------------------
Q 037567 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP-------------------------- 295 (374)
Q Consensus 242 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~-------------------------- 295 (374)
+.+++.|++.+++...++......+-..+.+.=+ .-.|.|+|+|+++|.|+.
T Consensus 463 E~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~AG~--~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~ 540 (913)
T PRK13103 463 EHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQAGR--PGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKAD 540 (913)
T ss_pred HHHHHHHHHcCCcHHHhccccchhHHHHHHcCCC--CCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHH
Confidence 9999999999998877777655444444443222 346999999999999994
Q ss_pred -----------CccEEEEECCCCChhHHHHhhccCCCCCCceEEEEEeeccC
Q 037567 296 -----------DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN 336 (374)
Q Consensus 296 -----------~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 336 (374)
+=-+||....+.|..-=.|..||+||.|.+|.+-.|++-+|
T Consensus 541 ~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED 592 (913)
T PRK13103 541 WQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 592 (913)
T ss_pred HHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 11257888888899999999999999999999988888766
No 124
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=2.1e-20 Score=176.62 Aligned_cols=123 Identities=18% Similarity=0.192 Sum_probs=107.9
Q ss_pred chHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEecccccc
Q 037567 212 SFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMG 291 (374)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G 291 (374)
.....++..+......+.++||||+++..++.+++.|++.+++...+|+ ...+|+..+..|..+...|+|||+++++|
T Consensus 582 eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRG 659 (1025)
T PRK12900 582 EKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRG 659 (1025)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCC
Confidence 3445566666555567899999999999999999999999999999997 47789999999999999999999999999
Q ss_pred cccc---Ccc-----EEEEECCCCChhHHHHhhccCCCCCCceEEEEEeeccC
Q 037567 292 IDKP---DVR-----HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN 336 (374)
Q Consensus 292 ~d~~---~~~-----~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 336 (374)
+|++ .+. +||.+..|.|...+.|++||+||.|.+|.+..+++.+|
T Consensus 660 tDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD 712 (1025)
T PRK12900 660 TDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLED 712 (1025)
T ss_pred CCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhH
Confidence 9999 443 34888889999999999999999999999999998876
No 125
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=4.9e-20 Score=167.46 Aligned_cols=302 Identities=16% Similarity=0.212 Sum_probs=192.6
Q ss_pred HHHHHHHHcCCCEEEEccCCCCchhh-----hhccccc----cCCcEEEEcchHHHHHHHHHHHH----HcCCceEEcCC
Q 037567 19 KDVIQRIIEKRDCLVVMATGSGKSLC-----YQLPPLV----TGKTALVVSPLISLMQDQVMSLK----QRGINAEFLGS 85 (374)
Q Consensus 19 ~~~~~~~~~~~~~l~~a~tGsGKT~~-----~~l~~~~----~~~~~lil~P~~~l~~q~~~~~~----~~~~~~~~~~~ 85 (374)
.++..++..+.-+|++|.||||||.- |...-.. ...-+=|.-|+|..+--+++... .++..+.+...
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIR 341 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIR 341 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEE
Confidence 35666777778889999999999942 2222111 13456778899877665555443 33333332211
Q ss_pred CCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhc------
Q 037567 86 AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFL------ 159 (374)
Q Consensus 86 ~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~------ 159 (374)
..........|.++|.+-|++ .....+.+..++.||+||||.= +......+..+.++....
T Consensus 342 -------fd~ti~e~T~IkFMTDGVLLr---Ei~~DflL~kYSvIIlDEAHER---SvnTDILiGmLSRiV~LR~k~~ke 408 (1172)
T KOG0926|consen 342 -------FDGTIGEDTSIKFMTDGVLLR---EIENDFLLTKYSVIILDEAHER---SVNTDILIGMLSRIVPLRQKYYKE 408 (1172)
T ss_pred -------eccccCCCceeEEecchHHHH---HHHHhHhhhhceeEEechhhhc---cchHHHHHHHHHHHHHHHHHHhhh
Confidence 111122335799999997654 4446777889999999999953 333334444444433322
Q ss_pred ----CCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEEEeecC-CcchHHHHHHHH---HHhhcCCCcE
Q 037567 160 ----LGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINR-GQSFVDELVQEI---LKSVAGAGSI 231 (374)
Q Consensus 160 ----~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~ 231 (374)
.+.+.|.||||+.-.+...--..+.+.++.+.+.. ..+...+++... ...++.+..+.. .+++ +.|.+
T Consensus 409 ~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdA---RQfPVsIHF~krT~~DYi~eAfrKtc~IH~kL-P~G~I 484 (1172)
T KOG0926|consen 409 QCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDA---RQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKL-PPGGI 484 (1172)
T ss_pred hcccCceeEEEEeeeEEecccccCceecCCCCceeeeec---ccCceEEEeccCCCchHHHHHHHHHHHHhhcC-CCCcE
Confidence 24678999999988765444445556666443333 223333333222 224444444443 3333 67889
Q ss_pred EEEecchhHHHHHHHHHHHcC-----------------------------------------------------------
Q 037567 232 IVYCMTIKDVEEISKALKQLG----------------------------------------------------------- 252 (374)
Q Consensus 232 lVf~~~~~~~~~l~~~l~~~~----------------------------------------------------------- 252 (374)
|||+....++..+++.|++.-
T Consensus 485 LVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~ 564 (1172)
T KOG0926|consen 485 LVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASL 564 (1172)
T ss_pred EEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhh
Confidence 999999999999999987640
Q ss_pred ----------------------------------------CceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccc
Q 037567 253 ----------------------------------------VKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292 (374)
Q Consensus 253 ----------------------------------------~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~ 292 (374)
.-|.++++=++......+...--+|..-++|+|+.+++++
T Consensus 565 raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSL 644 (1172)
T KOG0926|consen 565 RAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSL 644 (1172)
T ss_pred hhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhccc
Confidence 0022334444444455555555567777999999999999
Q ss_pred cccCccEEEEECCCC------------------ChhHHHHhhccCCCCCCceEEEEEeeccCCC
Q 037567 293 DKPDVRHVIHYGCPK------------------TLESYYQESGRCGRDGIASVCWLYYARSNFA 338 (374)
Q Consensus 293 d~~~~~~vi~~~~p~------------------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 338 (374)
.+|++++||+.+... |-..--||.|||||.| +|.||-+|+..-+.
T Consensus 645 TIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSAVf~ 707 (1172)
T KOG0926|consen 645 TIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSAVFS 707 (1172)
T ss_pred ccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhHHhh
Confidence 999999999776432 4556679999999987 88999998876554
No 126
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.86 E-value=8.7e-20 Score=176.67 Aligned_cols=184 Identities=16% Similarity=0.119 Sum_probs=111.0
Q ss_pred CeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCC--CceeEEE-Eeec----CCcchHHHHHHHHHHhhcCCCcEEEEe
Q 037567 163 PFVALTATATEKVRIDIINSLKLKNPYVTIASFDR--KNLFYGV-KVIN----RGQSFVDELVQEILKSVAGAGSIIVYC 235 (374)
Q Consensus 163 ~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~lVf~ 235 (374)
.+|++|||+.-.....+...+|+............ ....... .... +...+...+...+..-...+++++|++
T Consensus 575 ~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~g~~LVLF 654 (820)
T PRK07246 575 KTYFVSATLQISPRVSLADLLGFEEYLFHKIEKDKKQDQLVVVDQDMPLVTETSDEVYAEEIAKRLEELKQLQQPILVLF 654 (820)
T ss_pred eEEEEecccccCCCCcHHHHcCCCccceecCCCChHHccEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 47999999973222246777887543322111111 1111100 0110 112233333333333334678999999
Q ss_pred cchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccC--ccEEEEECCCC------
Q 037567 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD--VRHVIHYGCPK------ 307 (374)
Q Consensus 236 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~--~~~vi~~~~p~------ 307 (374)
+|.+..+.+++.|......+ ...|... .+..+++.|+.++..||++|...++|+|+|+ ...+|...+|.
T Consensus 655 tS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP 731 (820)
T PRK07246 655 NSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDP 731 (820)
T ss_pred CcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCH
Confidence 99999999999997654443 4444322 3566899999988889999999999999974 45566677663
Q ss_pred ------------------------ChhHHHHhhccCCCCCCceEEEEEeeccC--CCcccceeccccc
Q 037567 308 ------------------------TLESYYQESGRCGRDGIASVCWLYYARSN--FAKGDFYCGESQT 349 (374)
Q Consensus 308 ------------------------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~--~~~~~~~~~~~~~ 349 (374)
....+.|.+||.-|...+.-+++++++.- ..+-+.|.+...+
T Consensus 732 ~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~~k~Yg~~~l~sLP~ 799 (820)
T PRK07246 732 FVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRILTKSYGKQILASLAE 799 (820)
T ss_pred HHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCcccccHHHHHHHHhCCC
Confidence 23456899999999876444555555542 2233445554443
No 127
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.86 E-value=1.5e-20 Score=177.90 Aligned_cols=312 Identities=17% Similarity=0.218 Sum_probs=212.7
Q ss_pred CCCchhHHHHHHHHH----cCCCEEEEccCCCCchh---hh---hccccccCCcEEEEcchHHHHHHHHHHHHHc-CCce
Q 037567 12 SVFRPYQKDVIQRII----EKRDCLVVMATGSGKSL---CY---QLPPLVTGKTALVVSPLISLMQDQVMSLKQR-GINA 80 (374)
Q Consensus 12 ~~~~~~Q~~~~~~~~----~~~~~l~~a~tGsGKT~---~~---~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~-~~~~ 80 (374)
.++|.||.+.++.++ .++++|+...+|.|||+ +| +....+..++.|||+|...+ ..|.+++..+ ..++
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~-~~W~~ef~~w~~mn~ 447 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTI-TAWEREFETWTDMNV 447 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhh-HHHHHHHHHHhhhce
Confidence 579999999998764 57899999999999993 33 33334457889999999655 4588888766 4555
Q ss_pred EEcCCCCCchhhhhhh---hc-----CCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHH
Q 037567 81 EFLGSAQTDSSVQTKA---ET-----GYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQL 152 (374)
Q Consensus 81 ~~~~~~~~~~~~~~~~---~~-----~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~ 152 (374)
.++++........... .. -.++++++|++.++.-. ..+....+.+++|||||++.+... .+
T Consensus 448 i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk----~~L~~i~w~~~~vDeahrLkN~~~-------~l 516 (1373)
T KOG0384|consen 448 IVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDK----AELSKIPWRYLLVDEAHRLKNDES-------KL 516 (1373)
T ss_pred eeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccH----hhhccCCcceeeecHHhhcCchHH-------HH
Confidence 5555554443322111 11 25899999999875431 233345688999999999986442 22
Q ss_pred HHHHHhcCCCCeeEEEeecCcccHHHHHHhcCCCCCeEEE--------------------------------------ec
Q 037567 153 DKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTI--------------------------------------AS 194 (374)
Q Consensus 153 ~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~ 194 (374)
-..+..+.-...+++|+||-.+..+++...+.+..|.... ..
T Consensus 517 ~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdveksl 596 (1373)
T KOG0384|consen 517 YESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSL 596 (1373)
T ss_pred HHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCC
Confidence 2223444456789999999887776655444322111000 00
Q ss_pred cCCCceeEEEEe----------------------------------------------ecCCcc-------------hHH
Q 037567 195 FDRKNLFYGVKV----------------------------------------------INRGQS-------------FVD 215 (374)
Q Consensus 195 ~~~~~~~~~~~~----------------------------------------------~~~~~~-------------~~~ 215 (374)
.....-...+.. +..... .+.
T Consensus 597 p~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~ 676 (1373)
T KOG0384|consen 597 PPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQ 676 (1373)
T ss_pred CCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHH
Confidence 000000111110 000000 000
Q ss_pred ---------HHHHHHHHhhc-CCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcC---CeeEE
Q 037567 216 ---------ELVQEILKSVA-GAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRD---EIRVM 282 (374)
Q Consensus 216 ---------~~~~~~~~~~~-~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g---~~~il 282 (374)
-++..++.++. .+.+||||..-+....-|+++|.-++++...+.|....+-|++.+..|+.. .+..|
T Consensus 677 ~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFL 756 (1373)
T KOG0384|consen 677 ALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFL 756 (1373)
T ss_pred HHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEE
Confidence 11222333332 346899999999999999999999999999999999999999999999974 46688
Q ss_pred EEeccccccccccCccEEEEECCCCChhHHHHhhccCCCCCCceEE--EEEeecc
Q 037567 283 VATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVC--WLYYARS 335 (374)
Q Consensus 283 v~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~--~~~~~~~ 335 (374)
++|.+.+-|||+-.+++||+||..|++.+=+|...||.|.||...| |-+++..
T Consensus 757 LSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 757 LSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred EecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 9999999999999999999999999999999999999999997654 4455554
No 128
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.86 E-value=3.4e-20 Score=168.32 Aligned_cols=315 Identities=16% Similarity=0.180 Sum_probs=207.7
Q ss_pred CCchhHHHHHHHHH----cCCCEEEEccCCCCchh---hhhccccc--cCCcEEEEcchHHHHHHHHHHHHHcCCceEE-
Q 037567 13 VFRPYQKDVIQRII----EKRDCLVVMATGSGKSL---CYQLPPLV--TGKTALVVSPLISLMQDQVMSLKQRGINAEF- 82 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~----~~~~~l~~a~tGsGKT~---~~~l~~~~--~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~- 82 (374)
++.+||.-.++.+. ++-++|+...+|.|||. +|+..+.+ ..++-|||||+. ..+.|.+++.+|-....+
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsS-TleNWlrEf~kwCPsl~Ve 477 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSS-TLENWLREFAKWCPSLKVE 477 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecch-hHHHHHHHHHHhCCceEEE
Confidence 48899999988764 34577999999999993 33222222 367799999995 456699999999766554
Q ss_pred -cCCCCCchhh-hhhh--hcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHh
Q 037567 83 -LGSAQTDSSV-QTKA--ETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTF 158 (374)
Q Consensus 83 -~~~~~~~~~~-~~~~--~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~ 158 (374)
+++....... .... ....++|+++||.....-... ...+...+++++|+||.|.+.+...+ +...+..
T Consensus 478 ~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdD-Rsflk~~~~n~viyDEgHmLKN~~Se------Ry~~LM~- 549 (941)
T KOG0389|consen 478 PYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDD-RSFLKNQKFNYVIYDEGHMLKNRTSE------RYKHLMS- 549 (941)
T ss_pred eccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHH-HHHHHhccccEEEecchhhhhccchH------HHHHhcc-
Confidence 3333322222 1111 234789999999876543221 12334567899999999999876542 2232222
Q ss_pred cCCCCeeEEEeecCcccHHHHHHhcCCC----------------------------------------------------
Q 037567 159 LLGVPFVALTATATEKVRIDIINSLKLK---------------------------------------------------- 186 (374)
Q Consensus 159 ~~~~~~i~~SaT~~~~~~~~~~~~~~~~---------------------------------------------------- 186 (374)
.+....+++|+||-.+...++...+.+.
T Consensus 550 I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K 629 (941)
T KOG0389|consen 550 INANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRRLK 629 (941)
T ss_pred ccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 2355689999998877655433322210
Q ss_pred -------CCe---EEEeccC-----------------CCceeEEEEeec---------------------C---------
Q 037567 187 -------NPY---VTIASFD-----------------RKNLFYGVKVIN---------------------R--------- 209 (374)
Q Consensus 187 -------~~~---~~~~~~~-----------------~~~~~~~~~~~~---------------------~--------- 209 (374)
++. +..-... .......-.... .
T Consensus 630 ~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak 709 (941)
T KOG0389|consen 630 SQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKMAK 709 (941)
T ss_pred HHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHHHH
Confidence 000 0000000 000000000000 0
Q ss_pred --------------------------------------------C----cchHHHHHHHHHHhh-cCCCcEEEEecchhH
Q 037567 210 --------------------------------------------G----QSFVDELVQEILKSV-AGAGSIIVYCMTIKD 240 (374)
Q Consensus 210 --------------------------------------------~----~~~~~~~~~~~~~~~-~~~~~~lVf~~~~~~ 240 (374)
+ .+..-..+..++... ..+.++|||......
T Consensus 710 ~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTqm 789 (941)
T KOG0389|consen 710 RILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQM 789 (941)
T ss_pred HHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHHH
Confidence 0 011112233333332 245789999999999
Q ss_pred HHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCC--eeEEEEeccccccccccCccEEEEECCCCChhHHHHhhcc
Q 037567 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDE--IRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGR 318 (374)
Q Consensus 241 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR 318 (374)
..-+...|...++....+.|.+.-.+|+.++..|...+ ...|++|.+.+.|||+..+++||.++...++-+-.|.-.|
T Consensus 790 LDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDR 869 (941)
T KOG0389|consen 790 LDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDR 869 (941)
T ss_pred HHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHH
Confidence 99999999999999999999999999999999999864 3467799999999999999999999999999999999999
Q ss_pred CCCCCCceEE--EEEeeccC
Q 037567 319 CGRDGIASVC--WLYYARSN 336 (374)
Q Consensus 319 ~~R~~~~g~~--~~~~~~~~ 336 (374)
|.|.||..-| +-+++++.
T Consensus 870 cHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 870 CHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred HHhhCCcceeEEEEEEecCc
Confidence 9999986644 44555543
No 129
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.86 E-value=2.2e-20 Score=163.54 Aligned_cols=289 Identities=19% Similarity=0.218 Sum_probs=192.1
Q ss_pred CCEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhhhhhhhcCCeeEEEEcC
Q 037567 29 RDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTP 108 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~ 108 (374)
+-++-+|||+||||.-+ +.-+.+.+..++.-|.+-|+.++++.+...|+...++++........+ ......+-+|.
T Consensus 192 kIi~H~GPTNSGKTy~A-Lqrl~~aksGvycGPLrLLA~EV~~r~na~gipCdL~TGeE~~~~~~~---~~~a~hvScTV 267 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRA-LQRLKSAKSGVYCGPLRLLAHEVYDRLNALGIPCDLLTGEERRFVLDN---GNPAQHVSCTV 267 (700)
T ss_pred eEEEEeCCCCCchhHHH-HHHHhhhccceecchHHHHHHHHHHHhhhcCCCccccccceeeecCCC---CCcccceEEEE
Confidence 44566899999999874 444556788999999999999999999999999888876433322221 22346777888
Q ss_pred cccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCeeEEEeecCcccHHHHHHhcCCCCC
Q 037567 109 EKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNP 188 (374)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~ 188 (374)
|+..-- ..+++.|+||++.+.+..... .+.+.+--+...- |=+.+-|.- ..-+.........
T Consensus 268 EM~sv~----------~~yeVAViDEIQmm~Dp~RGw-----AWTrALLGl~AdE-iHLCGepsv--ldlV~~i~k~TGd 329 (700)
T KOG0953|consen 268 EMVSVN----------TPYEVAVIDEIQMMRDPSRGW-----AWTRALLGLAADE-IHLCGEPSV--LDLVRKILKMTGD 329 (700)
T ss_pred EEeecC----------CceEEEEehhHHhhcCcccch-----HHHHHHHhhhhhh-hhccCCchH--HHHHHHHHhhcCC
Confidence 876321 456899999999998755542 2222211111111 112222222 2122223333333
Q ss_pred eEEEeccCCCceeEEEEeecCCcchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCc-eeeeecCCChHHH
Q 037567 189 YVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVK-AGTYHGQMGSKAR 267 (374)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~r 267 (374)
.+.....++..... +.+.+..-+..+.+++ ++| |-+++..-.+...+.+.+.. +..++|+++++.|
T Consensus 330 ~vev~~YeRl~pL~-----------v~~~~~~sl~nlk~GD-CvV-~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr 396 (700)
T KOG0953|consen 330 DVEVREYERLSPLV-----------VEETALGSLSNLKPGD-CVV-AFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETR 396 (700)
T ss_pred eeEEEeecccCcce-----------ehhhhhhhhccCCCCC-eEE-EeehhhHHHHHHHHHHhcCcceEEEecCCCCchh
Confidence 34443333322211 1112222333443444 433 33677888999999888766 9999999999999
Q ss_pred HHHHHhhhc--CCeeEEEEeccccccccccCccEEEEECCC---------CChhHHHHhhccCCCCCC--ceEEEEEeec
Q 037567 268 EEAHRLFIR--DEIRVMVATMAFGMGIDKPDVRHVIHYGCP---------KTLESYYQESGRCGRDGI--ASVCWLYYAR 334 (374)
Q Consensus 268 ~~~~~~f~~--g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p---------~s~~~~~Q~~GR~~R~~~--~g~~~~~~~~ 334 (374)
.+....|++ ++.+|+|+|+++++|+|+ +++-||++++. .+..+..|..|||||.|. +.-.++.+..
T Consensus 397 ~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~ 475 (700)
T KOG0953|consen 397 LAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHS 475 (700)
T ss_pred HHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeH
Confidence 999999998 789999999999999999 68888888765 367889999999999864 2334555667
Q ss_pred cCCCcccceeccccchHHH
Q 037567 335 SNFAKGDFYCGESQTENQR 353 (374)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~ 353 (374)
+|+..+...++........
T Consensus 476 eDL~~L~~~l~~p~epi~~ 494 (700)
T KOG0953|consen 476 EDLKLLKRILKRPVEPIKN 494 (700)
T ss_pred hhHHHHHHHHhCCchHHHh
Confidence 7888888887765555444
No 130
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.85 E-value=1.3e-19 Score=156.66 Aligned_cols=306 Identities=15% Similarity=0.137 Sum_probs=196.7
Q ss_pred CCCchhHHHHHHHHHc-CCCEEEEccCCCCchhhhhcccc--ccCCcEEEEcchHHHHHHHHHHHHHcCCc---eEEcCC
Q 037567 12 SVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPL--VTGKTALVVSPLISLMQDQVMSLKQRGIN---AEFLGS 85 (374)
Q Consensus 12 ~~~~~~Q~~~~~~~~~-~~~~l~~a~tGsGKT~~~~l~~~--~~~~~~lil~P~~~l~~q~~~~~~~~~~~---~~~~~~ 85 (374)
+.+-|+|.+.+...++ |..+++...+|.|||+-++..+. ......||+||. .+-..|.+++.+|-.. +.++..
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEwplliVcPA-svrftWa~al~r~lps~~pi~vv~~ 275 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEWPLLIVCPA-SVRFTWAKALNRFLPSIHPIFVVDK 275 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcCcEEEEecH-HHhHHHHHHHHHhcccccceEEEec
Confidence 3578999999986665 77888888899999976543332 367889999998 5777799999887322 122221
Q ss_pred CCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcC-CCCe
Q 037567 86 AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLL-GVPF 164 (374)
Q Consensus 86 ~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 164 (374)
...... ..-....|.|.+++.+..+ ........+.++|+||+|++.+... .+...+..... ..++
T Consensus 276 ~~D~~~----~~~t~~~v~ivSye~ls~l----~~~l~~~~~~vvI~DEsH~Lk~skt------kr~Ka~~dllk~akhv 341 (689)
T KOG1000|consen 276 SSDPLP----DVCTSNTVAIVSYEQLSLL----HDILKKEKYRVVIFDESHMLKDSKT------KRTKAATDLLKVAKHV 341 (689)
T ss_pred ccCCcc----ccccCCeEEEEEHHHHHHH----HHHHhcccceEEEEechhhhhccch------hhhhhhhhHHHHhhhe
Confidence 111100 0011246888999877433 1223334489999999999976221 11222222211 4579
Q ss_pred eEEEeecCcccHHHHHHhcCCCCCeE-------------------EEec---------------------------cCCC
Q 037567 165 VALTATATEKVRIDIINSLKLKNPYV-------------------TIAS---------------------------FDRK 198 (374)
Q Consensus 165 i~~SaT~~~~~~~~~~~~~~~~~~~~-------------------~~~~---------------------------~~~~ 198 (374)
|++|+||.-+..-++.......+... -... ...+
T Consensus 342 ILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLP 421 (689)
T KOG1000|consen 342 ILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLP 421 (689)
T ss_pred EEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 99999987554322111111000000 0000 0000
Q ss_pred ceeEEEEeecC------------------------------------Cc-chHHHHHHHHHH----hhcCCCcEEEEecc
Q 037567 199 NLFYGVKVINR------------------------------------GQ-SFVDELVQEILK----SVAGAGSIIVYCMT 237 (374)
Q Consensus 199 ~~~~~~~~~~~------------------------------------~~-~~~~~~~~~~~~----~~~~~~~~lVf~~~ 237 (374)
.....+..... .. .....+...++. -..++.|.+||+..
T Consensus 422 pKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH 501 (689)
T KOG1000|consen 422 PKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHH 501 (689)
T ss_pred ccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehh
Confidence 00000000000 00 011122222222 12356799999999
Q ss_pred hhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCC-eeE-EEEeccccccccccCccEEEEECCCCChhHHHHh
Q 037567 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDE-IRV-MVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQE 315 (374)
Q Consensus 238 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~i-lv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~ 315 (374)
....+.+...+.++++....|.|..+..+|+...+.|+..+ ..| +++..++++|+++...+.|++..+++++.-++|.
T Consensus 502 ~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQA 581 (689)
T KOG1000|consen 502 QIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQA 581 (689)
T ss_pred HHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEec
Confidence 99999999999999999999999999999999999999764 454 4577789999999999999999999999999999
Q ss_pred hccCCCCCCceEEEEEe
Q 037567 316 SGRCGRDGIASVCWLYY 332 (374)
Q Consensus 316 ~GR~~R~~~~g~~~~~~ 332 (374)
-.|+.|.||...+.+.|
T Consensus 582 EDRaHRiGQkssV~v~y 598 (689)
T KOG1000|consen 582 EDRAHRIGQKSSVFVQY 598 (689)
T ss_pred hhhhhhccccceeeEEE
Confidence 99999999987665443
No 131
>COG4889 Predicted helicase [General function prediction only]
Probab=99.84 E-value=7.5e-21 Score=174.24 Aligned_cols=309 Identities=19% Similarity=0.214 Sum_probs=181.6
Q ss_pred CCchhHHHHHHHHHcC----CCEEEEccCCCCchhhhhccccc-cCCcEEEEcchHHHHHHHHHHHHHc---CCceEEcC
Q 037567 13 VFRPYQKDVIQRIIEK----RDCLVVMATGSGKSLCYQLPPLV-TGKTALVVSPLISLMQDQVMSLKQR---GINAEFLG 84 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~----~~~l~~a~tGsGKT~~~~l~~~~-~~~~~lil~P~~~l~~q~~~~~~~~---~~~~~~~~ 84 (374)
+|||||..|+.+..++ ...=+.++||+|||++.+-..-. ...++|+++|+.+|..|..+++... .+....++
T Consensus 161 k~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~~~iL~LvPSIsLLsQTlrew~~~~~l~~~a~aVc 240 (1518)
T COG4889 161 KPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAAARILFLVPSISLLSQTLREWTAQKELDFRASAVC 240 (1518)
T ss_pred CCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhhhheEeecchHHHHHHHHHHHhhccCccceeEEEe
Confidence 6999999999998874 34567789999999886533221 2489999999999999999998753 33333333
Q ss_pred CCCCchhhh------------------------hhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhc
Q 037567 85 SAQTDSSVQ------------------------TKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISE 140 (374)
Q Consensus 85 ~~~~~~~~~------------------------~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~ 140 (374)
++....... ......+--|+++|++++...... ...-+..+++||.||||+-..
T Consensus 241 SD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA--Qe~G~~~fDliicDEAHRTtG 318 (1518)
T COG4889 241 SDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA--QEAGLDEFDLIICDEAHRTTG 318 (1518)
T ss_pred cCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH--HHcCCCCccEEEecchhcccc
Confidence 321111000 011123446899999998776444 455567899999999999753
Q ss_pred ccC--cchHHHHHHHHHHHhcCCCCeeEEEeecCcccHH--HHHHh-------------cC----------------CCC
Q 037567 141 WGH--DFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI--DIINS-------------LK----------------LKN 187 (374)
Q Consensus 141 ~~~--~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~--~~~~~-------------~~----------------~~~ 187 (374)
... .-...+.++.. -......++++|||||.-.... .-... +| +.+
T Consensus 319 a~~a~dd~saFt~vHs-~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~FgeAv~rdlLTD 397 (1518)
T COG4889 319 ATLAGDDKSAFTRVHS-DQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRLGFGEAVERDLLTD 397 (1518)
T ss_pred ceecccCcccceeecC-cchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhcccHHHHHHhhhhcc
Confidence 110 00101111110 0111235678999997643211 00000 00 111
Q ss_pred CeEEEeccCCCceeEEEEeecCC------cchHHHHHHHH---HHh-------------hcCCCcEEEEecchhHHHHHH
Q 037567 188 PYVTIASFDRKNLFYGVKVINRG------QSFVDELVQEI---LKS-------------VAGAGSIIVYCMTIKDVEEIS 245 (374)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~---~~~-------------~~~~~~~lVf~~~~~~~~~l~ 245 (374)
+.+..-..+...+.......... ......++... .+. ..+..+.+-||.+.++...++
T Consensus 398 YKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~ 477 (1518)
T COG4889 398 YKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIA 477 (1518)
T ss_pred ceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHHHHHhhHHHHHHH
Confidence 22221111111111111000000 01111111111 110 011235788888888877777
Q ss_pred HHHHHc-------------CCc--eeeeecCCChHHHHHHHHh---hhcCCeeEEEEeccccccccccCccEEEEECCCC
Q 037567 246 KALKQL-------------GVK--AGTYHGQMGSKAREEAHRL---FIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPK 307 (374)
Q Consensus 246 ~~l~~~-------------~~~--~~~~~~~~~~~~r~~~~~~---f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~ 307 (374)
+.+.+- ++. +.-+.|.|+..+|...+.. |...+.+||--...+++|+|+|.++.||++++..
T Consensus 478 ~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~ 557 (1518)
T COG4889 478 ESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRS 557 (1518)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCch
Confidence 665431 233 3445678888888665443 4556788888888999999999999999999999
Q ss_pred ChhHHHHhhccCCCCCC
Q 037567 308 TLESYYQESGRCGRDGI 324 (374)
Q Consensus 308 s~~~~~Q~~GR~~R~~~ 324 (374)
+..+.+|.+||+.|...
T Consensus 558 smVDIVQaVGRVMRKa~ 574 (1518)
T COG4889 558 SMVDIVQAVGRVMRKAK 574 (1518)
T ss_pred hHHHHHHHHHHHHHhCc
Confidence 99999999999999743
No 132
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=4.9e-18 Score=158.57 Aligned_cols=322 Identities=15% Similarity=0.138 Sum_probs=208.1
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc---cCCcEEEEcchHHHHHHHHHHHH----
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV---TGKTALVVSPLISLMQDQVMSLK---- 74 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~---~~~~~lil~P~~~l~~q~~~~~~---- 74 (374)
.++.++.+|.. |++.|.-+--.+.+|+ +..+.||-|||+++.+|+.. .++.|-|++...-|+.--.+++.
T Consensus 68 REA~~R~lG~r-~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~GkgVhVVTvNdYLA~RDae~mg~vy~ 144 (925)
T PRK12903 68 REATKRVLGKR-PYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFN 144 (925)
T ss_pred HHHHHHHhCCC-cCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhcCCceEEEecchhhhhhhHHHHHHHHH
Confidence 45677788884 8888877776666554 89999999999998887653 58889999999999875444443
Q ss_pred HcCCceEEcCCCCCchhhhhhhhcCCeeEEEEcCccccc-Cchh----hHHHHHhcCccEEEEeccchhh-ccc------
Q 037567 75 QRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACI-IPIS----FWSKLLKAGVCLFAVDEAHCIS-EWG------ 142 (374)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~-~~~~----~~~~~~~~~~~~vviDE~h~~~-~~~------ 142 (374)
-+|+.+.+......... ......+||+++|...|.. +++. .........+.+.||||++.+. +..
T Consensus 145 fLGLsvG~i~~~~~~~~---rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLII 221 (925)
T PRK12903 145 FLGLSVGINKANMDPNL---KREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLII 221 (925)
T ss_pred HhCCceeeeCCCCChHH---HHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccc
Confidence 45888887765433332 2233458999999986633 1211 1223344678899999999974 110
Q ss_pred ----CcchHHHHHHHHHHHhcC--------CCC-----------------------------------------------
Q 037567 143 ----HDFRLEYKQLDKLRTFLL--------GVP----------------------------------------------- 163 (374)
Q Consensus 143 ----~~~~~~~~~~~~~~~~~~--------~~~----------------------------------------------- 163 (374)
......+.....+...+. ..+
T Consensus 222 Sg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~ 301 (925)
T PRK12903 222 SGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDV 301 (925)
T ss_pred cCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCC
Confidence 000111222222222111 011
Q ss_pred --------------------------------------------------------------eeEEEeecCcccHHHHHH
Q 037567 164 --------------------------------------------------------------FVALTATATEKVRIDIIN 181 (374)
Q Consensus 164 --------------------------------------------------------------~i~~SaT~~~~~~~~~~~ 181 (374)
+.+||+|..... .++..
T Consensus 302 dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~-~Ef~~ 380 (925)
T PRK12903 302 EYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEE-QEFID 380 (925)
T ss_pred ceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHH-HHHHH
Confidence 333333332211 12222
Q ss_pred hcCCCCCeEEEeccCCCceeEEE--EeecCCcchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeee
Q 037567 182 SLKLKNPYVTIASFDRKNLFYGV--KVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYH 259 (374)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~ 259 (374)
.+++ .+...+.+.+...... ..+.........++.++.+....+.++||.|.+.+..+.+++.|.+.|++...++
T Consensus 381 iY~l---~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLN 457 (925)
T PRK12903 381 IYNM---RVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLN 457 (925)
T ss_pred HhCC---CEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeec
Confidence 2221 1222222222222221 1233344556677888877777899999999999999999999999999988888
Q ss_pred cCCChHHHHHHHHhhhcC-CeeEEEEeccccccccccCcc--------EEEEECCCCChhHHHHhhccCCCCCCceEEEE
Q 037567 260 GQMGSKAREEAHRLFIRD-EIRVMVATMAFGMGIDKPDVR--------HVIHYGCPKTLESYYQESGRCGRDGIASVCWL 330 (374)
Q Consensus 260 ~~~~~~~r~~~~~~f~~g-~~~ilv~t~~~~~G~d~~~~~--------~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~ 330 (374)
......+-..+. ..| .-.|.|+|+++++|.|+.--. +||....+.|..--.|..||+||.|.+|.+-.
T Consensus 458 Ak~~e~EA~IIa---~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f 534 (925)
T PRK12903 458 AKQNAREAEIIA---KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRF 534 (925)
T ss_pred ccchhhHHHHHH---hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceE
Confidence 875444433332 234 347999999999999996322 78888888898888999999999999999888
Q ss_pred EeeccC
Q 037567 331 YYARSN 336 (374)
Q Consensus 331 ~~~~~~ 336 (374)
|++-+|
T Consensus 535 ~lSLeD 540 (925)
T PRK12903 535 FISLDD 540 (925)
T ss_pred EEecch
Confidence 887765
No 133
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.82 E-value=3e-18 Score=160.85 Aligned_cols=282 Identities=17% Similarity=0.132 Sum_probs=178.9
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc---cCCcEEEEcchHHHHHHHHHHHH----
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV---TGKTALVVSPLISLMQDQVMSLK---- 74 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~---~~~~~lil~P~~~l~~q~~~~~~---- 74 (374)
+++.++.+|+. |++.|.-+.-.+. +.-+..+.||.|||+++.+|+.. .+..|-|++++..|+..-++++.
T Consensus 66 rEa~~R~lG~r-~ydvQlig~l~L~--~G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy~ 142 (870)
T CHL00122 66 REASFRTLGLR-HFDVQLIGGLVLN--DGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYR 142 (870)
T ss_pred HHHHHHHhCCC-CCchHhhhhHhhc--CCccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHHH
Confidence 45677788885 7787776655544 45699999999999998877643 58889999999999987666655
Q ss_pred HcCCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccc-cCchh----hHHHHHhcCccEEEEeccchhh-cc-------
Q 037567 75 QRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKAC-IIPIS----FWSKLLKAGVCLFAVDEAHCIS-EW------- 141 (374)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~-~~~~~----~~~~~~~~~~~~vviDE~h~~~-~~------- 141 (374)
.+|+.+.+..+..... .......++|+++|...+. ++++. .........+.+.||||++.+. +.
T Consensus 143 ~LGLsvg~i~~~~~~~---err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiI 219 (870)
T CHL00122 143 FLGLTVGLIQEGMSSE---ERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLII 219 (870)
T ss_pred HcCCceeeeCCCCChH---HHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceec
Confidence 3588887765543332 2233455799999997553 12221 1223344678899999999974 10
Q ss_pred -cC----------------------cc------------hHHHHHHHH---------------------HHHh--c-C--
Q 037567 142 -GH----------------------DF------------RLEYKQLDK---------------------LRTF--L-L-- 160 (374)
Q Consensus 142 -~~----------------------~~------------~~~~~~~~~---------------------~~~~--~-~-- 160 (374)
|. ++ ......+.. +... + .
T Consensus 220 Sg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~ 299 (870)
T CHL00122 220 SGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNV 299 (870)
T ss_pred cCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCC
Confidence 00 00 000000100 0000 0 0
Q ss_pred -----------------------------------------------------------CCCeeEEEeecCcccHHHHHH
Q 037567 161 -----------------------------------------------------------GVPFVALTATATEKVRIDIIN 181 (374)
Q Consensus 161 -----------------------------------------------------------~~~~i~~SaT~~~~~~~~~~~ 181 (374)
=.++.+||+|..... ..+..
T Consensus 300 dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~-~Ef~~ 378 (870)
T CHL00122 300 HYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEE-LEFEK 378 (870)
T ss_pred cEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHH-HHHHH
Confidence 013677777775432 23444
Q ss_pred hcCCCCCeEEEeccCCCcee--EEEEeecCCcchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeee
Q 037567 182 SLKLKNPYVTIASFDRKNLF--YGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYH 259 (374)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~ 259 (374)
.+++. +...+.+.+... ....++.........++.++.+....+.++||-|.+....+.+++.|.+.|++...++
T Consensus 379 iY~l~---vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLN 455 (870)
T CHL00122 379 IYNLE---VVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLN 455 (870)
T ss_pred HhCCC---EEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceee
Confidence 44432 222222222222 2223344555566778888888888999999999999999999999999999988888
Q ss_pred cCCC--hHHHHHHHHhhhcCCeeEEEEecccccccccc
Q 037567 260 GQMG--SKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295 (374)
Q Consensus 260 ~~~~--~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~ 295 (374)
.... ..+-..+.+.=+ .-.|.|+|+|+++|.|+.
T Consensus 456 Ak~~~~~~EA~IIA~AG~--~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 456 AKPENVRRESEIVAQAGR--KGSITIATNMAGRGTDII 491 (870)
T ss_pred CCCccchhHHHHHHhcCC--CCcEEEeccccCCCcCee
Confidence 8632 333333333222 346999999999999883
No 134
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.81 E-value=6.6e-19 Score=134.46 Aligned_cols=118 Identities=32% Similarity=0.566 Sum_probs=105.2
Q ss_pred HHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEecccccccc
Q 037567 214 VDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGID 293 (374)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d 293 (374)
...+...+.+....++++||||++...++.+++.|++.+.++..+||+++..++..+.+.|.++...++++|.++++|+|
T Consensus 14 ~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d 93 (131)
T cd00079 14 LEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGID 93 (131)
T ss_pred HHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcC
Confidence 33333333333336889999999999999999999988889999999999999999999999999999999999999999
Q ss_pred ccCccEEEEECCCCChhHHHHhhccCCCCCCceEEEEE
Q 037567 294 KPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLY 331 (374)
Q Consensus 294 ~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~ 331 (374)
+|.+++++++++|++...+.|++||++|.|+.|.++++
T Consensus 94 ~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 94 LPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999998887653
No 135
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.81 E-value=1.8e-17 Score=163.56 Aligned_cols=186 Identities=19% Similarity=0.220 Sum_probs=114.0
Q ss_pred CeeEEEeecCcccHH-HHHHhcCCCCCe---EEEec-cCC---CceeEEEEeec----CCcchHHHHHHHHHHhh-cCCC
Q 037567 163 PFVALTATATEKVRI-DIINSLKLKNPY---VTIAS-FDR---KNLFYGVKVIN----RGQSFVDELVQEILKSV-AGAG 229 (374)
Q Consensus 163 ~~i~~SaT~~~~~~~-~~~~~~~~~~~~---~~~~~-~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~ 229 (374)
.+|++|||+...... .+...+|+.+.. ....+ ++. ..+........ ....+...+...+.+-. ..++
T Consensus 674 ~~iltSATL~~~~~f~~~~~~lGl~~~~~~~~~~~SpF~~~~q~~l~vp~d~p~~~~~~~~~~~~~la~~i~~l~~~~~g 753 (928)
T PRK08074 674 SVILTSATLTVNGSFDYIIERLGLEDFYPRTLQIPSPFSYEEQAKLMIPTDMPPIKDVPIEEYIEEVAAYIAKIAKATKG 753 (928)
T ss_pred cEEEEeeecccCCCcHHHHHhcCCCCCCccEEEeCCCCCHHHhcEEEeecCCCCCCCCChHHHHHHHHHHHHHHHHhCCC
Confidence 378999998864332 345677775421 22222 121 11111111111 11222333333333322 2567
Q ss_pred cEEEEecchhHHHHHHHHHHHcCCc--eeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccC--ccEEEEECC
Q 037567 230 SIIVYCMTIKDVEEISKALKQLGVK--AGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD--VRHVIHYGC 305 (374)
Q Consensus 230 ~~lVf~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~--~~~vi~~~~ 305 (374)
+++|+++|.+..+.+++.|+..... ...+.-+++...|.++++.|+.++-.||++|...++|+|+|+ +..||..+.
T Consensus 754 ~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kL 833 (928)
T PRK08074 754 RMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVRL 833 (928)
T ss_pred CEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEEecC
Confidence 9999999999999999999764321 222332344456789999999988889999999999999998 577888886
Q ss_pred CC------------------------------ChhHHHHhhccCCCCCCceEEEEEeeccC--CCcccceecccc
Q 037567 306 PK------------------------------TLESYYQESGRCGRDGIASVCWLYYARSN--FAKGDFYCGESQ 348 (374)
Q Consensus 306 p~------------------------------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~--~~~~~~~~~~~~ 348 (374)
|. ....+.|.+||.-|..++..+++++++.- ..+-+.|.+...
T Consensus 834 PF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sLP 908 (928)
T PRK08074 834 PFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESLP 908 (928)
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhCC
Confidence 64 13445899999999876554555555542 223344555544
No 136
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.81 E-value=1.1e-18 Score=165.04 Aligned_cols=306 Identities=16% Similarity=0.147 Sum_probs=198.0
Q ss_pred CCchhHHHHHHHH--Hc--CCCEEEEccCCCCchhhhhccccc------------cCCcEEEEcchHHHHHHHHHHHHHc
Q 037567 13 VFRPYQKDVIQRI--IE--KRDCLVVMATGSGKSLCYQLPPLV------------TGKTALVVSPLISLMQDQVMSLKQR 76 (374)
Q Consensus 13 ~~~~~Q~~~~~~~--~~--~~~~l~~a~tGsGKT~~~~l~~~~------------~~~~~lil~P~~~l~~q~~~~~~~~ 76 (374)
.+|.||.+.++.+ ++ +-+.|++.++|-|||+-.+..+.. ...+.||+||+ .|+.+|..++.+|
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 5788999998754 23 457899999999999653322221 14459999999 7999999999998
Q ss_pred CCceEEcCCCCCchhh-hhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHH
Q 037567 77 GINAEFLGSAQTDSSV-QTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKL 155 (374)
Q Consensus 77 ~~~~~~~~~~~~~~~~-~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~ 155 (374)
-....+.......... .....-.+.+|+|++|+-+. +-...+....|.+.|+||-|.+.+.. ..+.+.
T Consensus 1054 ~pfL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~R----nD~d~l~~~~wNYcVLDEGHVikN~k-------tkl~ka 1122 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVR----NDVDYLIKIDWNYCVLDEGHVIKNSK-------TKLTKA 1122 (1549)
T ss_pred cchhhhhhhcCChHHHHHHHhhccccceEEeeHHHHH----HHHHHHHhcccceEEecCcceecchH-------HHHHHH
Confidence 5553332222112111 11111234589999998653 22234445678899999999987633 333444
Q ss_pred HHhcCCCCeeEEEeecCcccHHHHHHhcCCC-------------------------------------------------
Q 037567 156 RTFLLGVPFVALTATATEKVRIDIINSLKLK------------------------------------------------- 186 (374)
Q Consensus 156 ~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~------------------------------------------------- 186 (374)
...+...+++.+|+||-.+...+++..+..-
T Consensus 1123 vkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF 1202 (1549)
T KOG0392|consen 1123 VKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPF 1202 (1549)
T ss_pred HHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHH
Confidence 4444566789999998877655444422100
Q ss_pred -------------CCeEEEe-ccC-----------------------------CCce----------------eEEEEee
Q 037567 187 -------------NPYVTIA-SFD-----------------------------RKNL----------------FYGVKVI 207 (374)
Q Consensus 187 -------------~~~~~~~-~~~-----------------------------~~~~----------------~~~~~~~ 207 (374)
++.++.. ..+ .... ...--+.
T Consensus 1203 ~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvl 1282 (1549)
T KOG0392|consen 1203 LLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVL 1282 (1549)
T ss_pred HHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceee
Confidence 0000000 000 0000 0000000
Q ss_pred cCCc----------------------chHHHHHHHHHHhhc---------------CCCcEEEEecchhHHHHHHHHHHH
Q 037567 208 NRGQ----------------------SFVDELVQEILKSVA---------------GAGSIIVYCMTIKDVEEISKALKQ 250 (374)
Q Consensus 208 ~~~~----------------------~~~~~~~~~~~~~~~---------------~~~~~lVf~~~~~~~~~l~~~l~~ 250 (374)
.... .-+...+..++.... .+.++||||.-++.+..+.+.|.+
T Consensus 1283 t~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k 1362 (1549)
T KOG0392|consen 1283 TPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFK 1362 (1549)
T ss_pred CCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhh
Confidence 0000 001122222322211 124799999999999999988876
Q ss_pred cCC-ce--eeeecCCChHHHHHHHHhhhcC-CeeEEE-EeccccccccccCccEEEEECCCCChhHHHHhhccCCCCCCc
Q 037567 251 LGV-KA--GTYHGQMGSKAREEAHRLFIRD-EIRVMV-ATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIA 325 (374)
Q Consensus 251 ~~~-~~--~~~~~~~~~~~r~~~~~~f~~g-~~~ilv-~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~ 325 (374)
.-. .+ ..+.|..++.+|+++.++|+++ .++||+ +|...+-|+|+.+.+.||++.-.|++..-+|.+.||.|.||.
T Consensus 1363 ~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQK 1442 (1549)
T KOG0392|consen 1363 KYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQK 1442 (1549)
T ss_pred hhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCc
Confidence 432 23 3788999999999999999998 688875 778999999999999999999999999999999999999998
Q ss_pred eEEEE
Q 037567 326 SVCWL 330 (374)
Q Consensus 326 g~~~~ 330 (374)
..+=+
T Consensus 1443 rvVNV 1447 (1549)
T KOG0392|consen 1443 RVVNV 1447 (1549)
T ss_pred eeeee
Confidence 75533
No 137
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.80 E-value=8e-20 Score=148.23 Aligned_cols=152 Identities=26% Similarity=0.276 Sum_probs=100.7
Q ss_pred CCchhHHHHHHHHHc-------CCCEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCC
Q 037567 13 VFRPYQKDVIQRIIE-------KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGS 85 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~-------~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~ 85 (374)
+|+++|.+++..+.+ .+.+++.+|||||||.+++..+..-..++++++|+..|++|+...+..++........
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~~~ 82 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELARKVLIVAPNISLLEQWYDEFDDFGSEKYNFFE 82 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHCEEEEEESSHHHHHHHHHHHHHHSTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccccceeEecCHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 589999999999884 5789999999999998877544443339999999999999999999665433221110
Q ss_pred --------------CCCchhhhhhhhcCCeeEEEEcCcccccCchhh---------HHHHHhcCccEEEEeccchhhccc
Q 037567 86 --------------AQTDSSVQTKAETGYFQLLFMTPEKACIIPISF---------WSKLLKAGVCLFAVDEAHCISEWG 142 (374)
Q Consensus 86 --------------~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~---------~~~~~~~~~~~vviDE~h~~~~~~ 142 (374)
................+++++|.+++....... ........+++||+||||++....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~~~ 162 (184)
T PF04851_consen 83 KSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYPSDS 162 (184)
T ss_dssp --GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTHHHH
T ss_pred cccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcCCHH
Confidence 001111112233456789999999886553321 122334567899999999986522
Q ss_pred CcchHHHHHHHHHHHhcCCCCeeEEEeecCc
Q 037567 143 HDFRLEYKQLDKLRTFLLGVPFVALTATATE 173 (374)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~ 173 (374)
. +..+.. .++..+++|||||.+
T Consensus 163 ~--------~~~i~~-~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 163 S--------YREIIE-FKAAFILGLTATPFR 184 (184)
T ss_dssp H--------HHHHHH-SSCCEEEEEESS-S-
T ss_pred H--------HHHHHc-CCCCeEEEEEeCccC
Confidence 1 233333 567789999999963
No 138
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.80 E-value=5.2e-18 Score=146.51 Aligned_cols=303 Identities=15% Similarity=0.153 Sum_probs=190.7
Q ss_pred CchhHHHHHHHHHcCCCEEEEccCCCCchhhhhc----cccccCCcEEEEcchHHHHHHHHHHHH-HcCCceEEcCCCCC
Q 037567 14 FRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQL----PPLVTGKTALVVSPLISLMQDQVMSLK-QRGINAEFLGSAQT 88 (374)
Q Consensus 14 ~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l----~~~~~~~~~lil~P~~~l~~q~~~~~~-~~~~~~~~~~~~~~ 88 (374)
.+.++.+-+..+.+++-++++|.||||||.-.-- ..+....-+...-|++..+-+++.... ..+...+--.+...
T Consensus 48 vw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVadEMDv~lG~EVGysI 127 (699)
T KOG0925|consen 48 VWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSI 127 (699)
T ss_pred hHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHHHHHHHHHHHhccccchhccccc
Confidence 4555566666666788889999999999953110 011223667888899988888776654 23333221111111
Q ss_pred chhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCeeEEE
Q 037567 89 DSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALT 168 (374)
Q Consensus 89 ~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 168 (374)
.-+... ....-+-++|.++|.+ .....-.+..+.++|+||||.= ..........+.++....++.++|.||
T Consensus 128 rfEdC~---~~~T~Lky~tDgmLlr---Eams~p~l~~y~viiLDeahER---tlATDiLmGllk~v~~~rpdLk~vvmS 198 (699)
T KOG0925|consen 128 RFEDCT---SPNTLLKYCTDGMLLR---EAMSDPLLGRYGVIILDEAHER---TLATDILMGLLKEVVRNRPDLKLVVMS 198 (699)
T ss_pred cccccC---ChhHHHHHhcchHHHH---HHhhCcccccccEEEechhhhh---hHHHHHHHHHHHHHHhhCCCceEEEee
Confidence 111000 0001122456665533 2334445678899999999953 333444556777777777899999999
Q ss_pred eecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEEEeecCCcchHHHHHHHHHH--hhcCCCcEEEEecchhHHHHHHH
Q 037567 169 ATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILK--SVAGAGSIIVYCMTIKDVEEISK 246 (374)
Q Consensus 169 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~lVf~~~~~~~~~l~~ 246 (374)
||..... +...+ ...+.+..+....-.+ +-..+...+.++..++.+++ .....|.++||....++.+..++
T Consensus 199 atl~a~K---fq~yf-~n~Pll~vpg~~PvEi---~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~ 271 (699)
T KOG0925|consen 199 ATLDAEK---FQRYF-GNAPLLAVPGTHPVEI---FYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACR 271 (699)
T ss_pred cccchHH---HHHHh-CCCCeeecCCCCceEE---EecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHH
Confidence 9987654 23333 3444444443111111 11222334456666666544 23457899999999999999999
Q ss_pred HHHHc---------CCceeeeecCCChHHHHHHHHhhhc---C--CeeEEEEeccccccccccCccEEEEEC--------
Q 037567 247 ALKQL---------GVKAGTYHGQMGSKAREEAHRLFIR---D--EIRVMVATMAFGMGIDKPDVRHVIHYG-------- 304 (374)
Q Consensus 247 ~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~---g--~~~ilv~t~~~~~G~d~~~~~~vi~~~-------- 304 (374)
.+.+. .+.+..+| +++.+.+.+.-.. | ..+|+|+|.+++..+.++++.+||+.+
T Consensus 272 ~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYN 347 (699)
T KOG0925|consen 272 KISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYN 347 (699)
T ss_pred HHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccC
Confidence 98753 23566776 4444444333221 1 357999999999999999999999655
Q ss_pred ----------CCCChhHHHHhhccCCCCCCceEEEEEeeccCC
Q 037567 305 ----------CPKTLESYYQESGRCGRDGIASVCWLYYARSNF 337 (374)
Q Consensus 305 ----------~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 337 (374)
.|.|..+-.||.||+||. .+|.|+-+|++.-+
T Consensus 348 PRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~~~ 389 (699)
T KOG0925|consen 348 PRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 389 (699)
T ss_pred cceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHHhh
Confidence 345788889999999996 58999999998644
No 139
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.80 E-value=2e-18 Score=151.85 Aligned_cols=325 Identities=14% Similarity=0.082 Sum_probs=209.5
Q ss_pred CCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc-----cCCcEEEEcchHHHHHHHHHHHHHc------CC
Q 037567 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV-----TGKTALVVSPLISLMQDQVMSLKQR------GI 78 (374)
Q Consensus 10 ~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~-----~~~~~lil~P~~~l~~q~~~~~~~~------~~ 78 (374)
--+....+|.+++..+.+|++.++.-.+.+||++++.+.... .....++..|+.+++++..+.+.-. ..
T Consensus 283 ~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K 362 (1034)
T KOG4150|consen 283 TGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARK 362 (1034)
T ss_pred cccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehhhhh
Confidence 334688899999999999999999999999999998776543 4677899999999988654443211 01
Q ss_pred ceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccC--chhhHHHHHhcCccEEEEeccchhhc-ccCcchHHHHHHHHH
Q 037567 79 NAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACII--PISFWSKLLKAGVCLFAVDEAHCISE-WGHDFRLEYKQLDKL 155 (374)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~--~~~~~~~~~~~~~~~vviDE~h~~~~-~~~~~~~~~~~~~~~ 155 (374)
+..+-..+...+.........+..++++.|+..... .++.-.........++++||+|.+.. .+......++++.++
T Consensus 363 ~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L 442 (1034)
T KOG4150|consen 363 SAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDL 442 (1034)
T ss_pred cceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHH
Confidence 111222222222222333445568888888754321 11111112223345789999998753 333333333444333
Q ss_pred HHhc---CCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCC--CceeEEEEee------cCCcchHHHHHHHHHHh
Q 037567 156 RTFL---LGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDR--KNLFYGVKVI------NRGQSFVDELVQEILKS 224 (374)
Q Consensus 156 ~~~~---~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 224 (374)
..-+ .+.+++-.|+|...... .....+++.+...+...... ......+.+. .....++.+.-.-+.+.
T Consensus 443 ~~~F~~~~~~~~~~~~~~~K~~~~-~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~ 521 (1034)
T KOG4150|consen 443 IKGFEASINMGVYDGDTPYKDRTR-LRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEM 521 (1034)
T ss_pred HHHHHhhcCcceEeCCCCcCCHHH-HHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHH
Confidence 3322 25677777777666543 23344454444333322221 1111111110 11122333333344555
Q ss_pred hcCCCcEEEEecchhHHHHHHHHHHH----cCC----ceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccC
Q 037567 225 VAGAGSIIVYCMTIKDVEEISKALKQ----LGV----KAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296 (374)
Q Consensus 225 ~~~~~~~lVf~~~~~~~~~l~~~l~~----~~~----~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~ 296 (374)
..++-++|-||+.+..|+.+-...++ .+. .+..+.|+.+.++|.++..+.-.|+..-+|+|++++-|+|+..
T Consensus 522 i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~ 601 (1034)
T KOG4150|consen 522 VQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGH 601 (1034)
T ss_pred HHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhcccccc
Confidence 56788999999999998877655443 222 1345778999999999999999999999999999999999999
Q ss_pred ccEEEEECCCCChhHHHHhhccCCCCCCceEEEEEeecc
Q 037567 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARS 335 (374)
Q Consensus 297 ~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 335 (374)
++.|+..+.|.|..++.|..|||||.+++...+++....
T Consensus 602 LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~ 640 (1034)
T KOG4150|consen 602 LDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLG 640 (1034)
T ss_pred ceeEEEccCchhHHHHHHHhccccccCCCceEEEEEecc
Confidence 999999999999999999999999999988776665443
No 140
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.78 E-value=1.3e-18 Score=142.95 Aligned_cols=161 Identities=33% Similarity=0.479 Sum_probs=113.4
Q ss_pred cCCCCCchhHHHHHHHHHcC-CCEEEEccCCCCchhhhhccccc---c--CCcEEEEcchHHHHHHHHHHHHHcCCc---
Q 037567 9 FGYSVFRPYQKDVIQRIIEK-RDCLVVMATGSGKSLCYQLPPLV---T--GKTALVVSPLISLMQDQVMSLKQRGIN--- 79 (374)
Q Consensus 9 ~~~~~~~~~Q~~~~~~~~~~-~~~l~~a~tGsGKT~~~~l~~~~---~--~~~~lil~P~~~l~~q~~~~~~~~~~~--- 79 (374)
+++..++++|.++++.+... +.+++.+|||+|||.++...++. . ..++++++|+..++.|+...+......
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGL 83 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCe
Confidence 57788999999999999998 99999999999999876655543 2 378999999999999999999876522
Q ss_pred --eEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHH
Q 037567 80 --AEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRT 157 (374)
Q Consensus 80 --~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~ 157 (374)
.....+. ...........+..+++++|++.+....... ......++++|+||+|.+..... . ..+..+..
T Consensus 84 ~~~~~~~~~-~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~--~~~~~~~~~iIiDE~h~~~~~~~--~---~~~~~~~~ 155 (201)
T smart00487 84 KVVGLYGGD-SKREQLRKLESGKTDILVTTPGRLLDLLEND--LLELSNVDLVILDEAHRLLDGGF--G---DQLEKLLK 155 (201)
T ss_pred EEEEEeCCc-chHHHHHHHhcCCCCEEEeChHHHHHHHHcC--CcCHhHCCEEEEECHHHHhcCCc--H---HHHHHHHH
Confidence 2223222 2222222333343499999999876554331 13445678999999999975321 1 33333333
Q ss_pred hc-CCCCeeEEEeecCcccHH
Q 037567 158 FL-LGVPFVALTATATEKVRI 177 (374)
Q Consensus 158 ~~-~~~~~i~~SaT~~~~~~~ 177 (374)
.. ++.+++++|||++.....
T Consensus 156 ~~~~~~~~v~~saT~~~~~~~ 176 (201)
T smart00487 156 LLPKNVQLLLLSATPPEEIEN 176 (201)
T ss_pred hCCccceEEEEecCCchhHHH
Confidence 33 478899999999876554
No 141
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.78 E-value=9.7e-17 Score=149.03 Aligned_cols=107 Identities=17% Similarity=0.115 Sum_probs=80.1
Q ss_pred CCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhc----CCeeEEEEeccccccccc--------
Q 037567 227 GAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIR----DEIRVMVATMAFGMGIDK-------- 294 (374)
Q Consensus 227 ~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~----g~~~ilv~t~~~~~G~d~-------- 294 (374)
.+|.++|.+.+...++.+++.+...-.-...+.|+.+ .+..+++.|+. |...||++|..+++|+|+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 5779999999999999999999764223455556432 45667888887 467899999999999999
Q ss_pred cC--ccEEEEECCCC-------------------------ChhHHHHhhccCCCCCCc--eEEEEEeecc
Q 037567 295 PD--VRHVIHYGCPK-------------------------TLESYYQESGRCGRDGIA--SVCWLYYARS 335 (374)
Q Consensus 295 ~~--~~~vi~~~~p~-------------------------s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~ 335 (374)
|+ ++.||+..+|. ....+.|.+||.-|...+ .-++.++++.
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 34 78898887773 134568999999998665 4455555554
No 142
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.77 E-value=1.3e-18 Score=119.52 Aligned_cols=78 Identities=46% Similarity=0.707 Sum_probs=75.2
Q ss_pred HHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCCChhHHHHhhccCCCCC
Q 037567 246 KALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323 (374)
Q Consensus 246 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~ 323 (374)
+.|++.++.+..+||+++..+|+.+++.|+.++..|||+|+++++|+|+|.+++|+++++|+|+.+|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 467888999999999999999999999999999999999999999999999999999999999999999999999986
No 143
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=3.5e-16 Score=146.91 Aligned_cols=132 Identities=18% Similarity=0.172 Sum_probs=92.6
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc---cCCcEEEEcchHHHHHHHHHHHH----
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV---TGKTALVVSPLISLMQDQVMSLK---- 74 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~---~~~~~lil~P~~~l~~q~~~~~~---- 74 (374)
.++-++..|.. |++.|.-+--.+.+|+ +..+.||.|||+++.+|+.. .++.|-|++++.-||..-++++.
T Consensus 75 REa~~R~lG~r-~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~ 151 (939)
T PRK12902 75 REASKRVLGMR-HFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHR 151 (939)
T ss_pred HHHHHHHhCCC-cchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHH
Confidence 35666777774 7777766665554444 99999999999998888664 58889999999999987666654
Q ss_pred HcCCceEEcCCCCCchhhhhhhhcCCeeEEEEcCccccc-CchhhH----HHHHhcCccEEEEeccchhh
Q 037567 75 QRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACI-IPISFW----SKLLKAGVCLFAVDEAHCIS 139 (374)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~-~~~~~~----~~~~~~~~~~vviDE~h~~~ 139 (374)
-+|+.+.+..+..... .......+||+++|+..+.. +++..+ .......+.+.||||++.+.
T Consensus 152 ~LGLtvg~i~~~~~~~---err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 152 FLGLSVGLIQQDMSPE---ERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred HhCCeEEEECCCCChH---HHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 3588888775543332 23344668999999987722 222211 12234668899999999974
No 144
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.75 E-value=2.4e-16 Score=152.12 Aligned_cols=169 Identities=20% Similarity=0.248 Sum_probs=106.9
Q ss_pred CeeEEEeecCcccHHH-HHHhcCCCCCe--EEEecc-CCCc-eeEEE--EeecCCc-chHHHH---HHHHHHhhcCCCcE
Q 037567 163 PFVALTATATEKVRID-IINSLKLKNPY--VTIASF-DRKN-LFYGV--KVINRGQ-SFVDEL---VQEILKSVAGAGSI 231 (374)
Q Consensus 163 ~~i~~SaT~~~~~~~~-~~~~~~~~~~~--~~~~~~-~~~~-~~~~~--~~~~~~~-~~~~~~---~~~~~~~~~~~~~~ 231 (374)
.+|++|||+.+..... +....+..... ....+. +... ....+ ....... ....++ +.++... .++++
T Consensus 405 ~~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~spf~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~ 482 (654)
T COG1199 405 SVVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSPFNYEEQGQLYVPTDLPEPREPELLAKLAAYLREILKA--SPGGV 482 (654)
T ss_pred cEEEeeeeccCCCcHHHHHHHcCCccccceeccCCCCChhhcceEeccccCCCCCChHHHHHHHHHHHHHHhh--cCCCE
Confidence 3899999998865443 55555554444 122221 1111 11111 1111111 233333 3333333 45699
Q ss_pred EEEecchhHHHHHHHHHHHcCCc-eeeeecCCChHHHHHHHHhhhcCCe-eEEEEeccccccccccC--ccEEEEECCCC
Q 037567 232 IVYCMTIKDVEEISKALKQLGVK-AGTYHGQMGSKAREEAHRLFIRDEI-RVMVATMAFGMGIDKPD--VRHVIHYGCPK 307 (374)
Q Consensus 232 lVf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~r~~~~~~f~~g~~-~ilv~t~~~~~G~d~~~--~~~vi~~~~p~ 307 (374)
+||++|...++.+.+.+...... ....+|. ..+..+++.|..+.- .++|++..+++|+|+|+ +..||..+.|.
T Consensus 483 lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~---~~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~lPf 559 (654)
T COG1199 483 LVLFPSYEYLKRVAERLKDERSTLPVLTQGE---DEREELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIVGLPF 559 (654)
T ss_pred EEEeccHHHHHHHHHHHhhcCccceeeecCC---CcHHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEEecCC
Confidence 99999999999999999876542 3344444 344478888887654 89999999999999998 56788777764
Q ss_pred ------------------------------ChhHHHHhhccCCCCCCceEEEEEeeccC
Q 037567 308 ------------------------------TLESYYQESGRCGRDGIASVCWLYYARSN 336 (374)
Q Consensus 308 ------------------------------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 336 (374)
.+..+.|.+||+-|...+.-++++++..-
T Consensus 560 p~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~ 618 (654)
T COG1199 560 PNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRY 618 (654)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccc
Confidence 45677999999999766555555555543
No 145
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.75 E-value=1.6e-15 Score=145.27 Aligned_cols=169 Identities=16% Similarity=0.098 Sum_probs=105.7
Q ss_pred eeEEEeecCcc-cHHHHHHhcCCCC---Ce-EEEec-cCCCc-eeEEEEe---ec-CCcchHHHHHHHHHHhhcCCCcEE
Q 037567 164 FVALTATATEK-VRIDIINSLKLKN---PY-VTIAS-FDRKN-LFYGVKV---IN-RGQSFVDELVQEILKSVAGAGSII 232 (374)
Q Consensus 164 ~i~~SaT~~~~-~~~~~~~~~~~~~---~~-~~~~~-~~~~~-~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~l 232 (374)
+|++|||+... ....+...+|+.+ .. ...++ ++..+ ....+.. .. ....+...+...+.+.....+.++
T Consensus 459 vIltSATL~~~~~f~~~~~~lGL~~~~~~~~~~~~SpF~~~~q~~l~vp~~~~~p~~~~~~~~~~~~~i~~l~~~~gg~L 538 (697)
T PRK11747 459 AVLTSATLRSLNSFDRFQEQSGLPEKDGDRFLALPSPFDYPNQGKLVIPKMRAEPDNEEAHTAEMAEFLPELLEKHKGSL 538 (697)
T ss_pred EEEEeeeCCCCCchHHHHHHcCCCCCCCceEEEcCCCCCHHHccEEEeCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCEE
Confidence 68999998874 3334667778763 22 11111 21111 1111111 11 222334444444444444556689
Q ss_pred EEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhh----cCCeeEEEEeccccccccccC--ccEEEEECCC
Q 037567 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFI----RDEIRVMVATMAFGMGIDKPD--VRHVIHYGCP 306 (374)
Q Consensus 233 Vf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~----~g~~~ilv~t~~~~~G~d~~~--~~~vi~~~~p 306 (374)
|+++|....+.+++.|..........+|. ..+..+++.|+ .++-.||++|...++|+|+|+ ++.||..+.|
T Consensus 539 VlFtSy~~l~~v~~~l~~~~~~~ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~kLP 615 (697)
T PRK11747 539 VLFASRRQMQKVADLLPRDLRLMLLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVIITKIP 615 (697)
T ss_pred EEeCcHHHHHHHHHHHHHhcCCcEEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEEEEcCC
Confidence 99999999999999987532223445553 35667776666 466789999999999999998 6889888877
Q ss_pred C------------------------------ChhHHHHhhccCCCCCCceEEEEEeecc
Q 037567 307 K------------------------------TLESYYQESGRCGRDGIASVCWLYYARS 335 (374)
Q Consensus 307 ~------------------------------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 335 (374)
. ....+.|.+||.-|...+.-+++++++.
T Consensus 616 F~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 616 FAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 4 1234578999999986655456665554
No 146
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.75 E-value=1.1e-15 Score=147.72 Aligned_cols=108 Identities=20% Similarity=0.215 Sum_probs=80.3
Q ss_pred CCCcEEEEecchhHHHHHHHHHHHcCC-------ceeeeecCCChHHHHHHHHhhhc----CCeeEEEEe--cccccccc
Q 037567 227 GAGSIIVYCMTIKDVEEISKALKQLGV-------KAGTYHGQMGSKAREEAHRLFIR----DEIRVMVAT--MAFGMGID 293 (374)
Q Consensus 227 ~~~~~lVf~~~~~~~~~l~~~l~~~~~-------~~~~~~~~~~~~~r~~~~~~f~~----g~~~ilv~t--~~~~~G~d 293 (374)
..+.++||++|....+.+.+.+.+.+. ...++- .....++..+++.|.. |+-.||+++ ..+++|+|
T Consensus 521 ~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E-~~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGID 599 (705)
T TIGR00604 521 IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVE-TKDAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGID 599 (705)
T ss_pred CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEe-CCCcchHHHHHHHHHHHHhcCCceEEEEecCCcccCccc
Confidence 358899999999999999998876432 122222 2223578889999964 455699998 79999999
Q ss_pred ccC--ccEEEEECCCC-C------------------------------hhHHHHhhccCCCCCCceEEEEEeecc
Q 037567 294 KPD--VRHVIHYGCPK-T------------------------------LESYYQESGRCGRDGIASVCWLYYARS 335 (374)
Q Consensus 294 ~~~--~~~vi~~~~p~-s------------------------------~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 335 (374)
+++ ++.||..+.|. + .....|.+||+-|..++-.++++++..
T Consensus 600 f~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~iillD~R 674 (705)
T TIGR00604 600 FCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIVLLDKR 674 (705)
T ss_pred cCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEEEEehh
Confidence 998 68899899885 1 133479999999987766666666664
No 147
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.73 E-value=5.3e-17 Score=154.30 Aligned_cols=318 Identities=19% Similarity=0.217 Sum_probs=215.7
Q ss_pred CchhHHHHHHHHHcC-CCEEEEccCCCCchhhhhcccccc--CCcEEEEcchHHHHHHHHHHHHH-c----CCceEEcCC
Q 037567 14 FRPYQKDVIQRIIEK-RDCLVVMATGSGKSLCYQLPPLVT--GKTALVVSPLISLMQDQVMSLKQ-R----GINAEFLGS 85 (374)
Q Consensus 14 ~~~~Q~~~~~~~~~~-~~~l~~a~tGsGKT~~~~l~~~~~--~~~~lil~P~~~l~~q~~~~~~~-~----~~~~~~~~~ 85 (374)
..|+|.+.++.+++. .++++.+|+|||||.++.++++.+ ..++++++|..+.+...++.+.+ + |..+...++
T Consensus 1144 ~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~g 1223 (1674)
T KOG0951|consen 1144 FNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTG 1223 (1674)
T ss_pred cCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcCCccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCC
Confidence 478899999988874 578899999999999998888874 56899999999998877766654 2 333344433
Q ss_pred CCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhc-ccCcchHHH--HHHHHHHHhcCCC
Q 037567 86 AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISE-WGHDFRLEY--KQLDKLRTFLLGV 162 (374)
Q Consensus 86 ~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~-~~~~~~~~~--~~~~~~~~~~~~~ 162 (374)
...- .......-+++|+||+++..+ + ..+.+++.|.||.|.+.. .|.-....+ +.+..... .+.
T Consensus 1224 e~s~----~lkl~~~~~vii~tpe~~d~l-q------~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~--k~i 1290 (1674)
T KOG0951|consen 1224 ETSL----DLKLLQKGQVIISTPEQWDLL-Q------SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLE--KKI 1290 (1674)
T ss_pred cccc----chHHhhhcceEEechhHHHHH-h------hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHH--hhe
Confidence 2222 222233458999999988554 1 557889999999999864 333222222 33333322 367
Q ss_pred CeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCce--eEEEEeecC------CcchHHHHHHHHHHhhcCCCcEEEE
Q 037567 163 PFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNL--FYGVKVINR------GQSFVDELVQEILKSVAGAGSIIVY 234 (374)
Q Consensus 163 ~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~lVf 234 (374)
+++++|....+... + ++.....+.-..++.... ..+++.... ...+.......+.+...++++.+||
T Consensus 1291 r~v~ls~~lana~d--~---ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf 1365 (1674)
T KOG0951|consen 1291 RVVALSSSLANARD--L---IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVF 1365 (1674)
T ss_pred eEEEeehhhccchh--h---ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEE
Confidence 89999987766543 2 454444444333332222 222222221 1123344555666666788999999
Q ss_pred ecchhHHHHHHHHHHHc----------------------CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccc
Q 037567 235 CMTIKDVEEISKALKQL----------------------GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292 (374)
Q Consensus 235 ~~~~~~~~~l~~~l~~~----------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~ 292 (374)
+++++.+..++..+-.. ..+.+.-|.+++..+.+.+-..|..|.+.|+|...- ..|+
T Consensus 1366 ~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~ 1444 (1674)
T KOG0951|consen 1366 LPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGT 1444 (1674)
T ss_pred eccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-cccc
Confidence 99999988877544221 222233388999999999999999999999998777 7777
Q ss_pred cccCccEEEEEC-----------CCCChhHHHHhhccCCCCCCceEEEEEeeccCCCcccceeccccchHHHH
Q 037567 293 DKPDVRHVIHYG-----------CPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354 (374)
Q Consensus 293 d~~~~~~vi~~~-----------~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (374)
-.. .+.|+..+ .+.+..+..|+.|+|.| .|.|+++........+++|..+..+-+...
T Consensus 1445 ~~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl~e~lPves~l 1513 (1674)
T KOG0951|consen 1445 KLK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFLYEPLPVESHL 1513 (1674)
T ss_pred ccc-ceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhccCcCchHHHH
Confidence 654 33444222 23468999999999988 578999999999999999988877766553
No 148
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.72 E-value=3.4e-16 Score=147.58 Aligned_cols=133 Identities=17% Similarity=0.191 Sum_probs=107.4
Q ss_pred chHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCC-e-eEEEEecccc
Q 037567 212 SFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDE-I-RVMVATMAFG 289 (374)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~-~ilv~t~~~~ 289 (374)
..+..+.-.+.+....+.++|||+.-....+.|...|.-+|+..+.+.|..+-++|+.++++|+... + -.|++|...+
T Consensus 1260 GKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSgg 1339 (1958)
T KOG0391|consen 1260 GKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGG 1339 (1958)
T ss_pred chHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCc
Confidence 3444443334444457889999999999999999999999999999999999999999999999875 3 3456899999
Q ss_pred ccccccCccEEEEECCCCChhHHHHhhccCCCCCCceEEEEEeeccCCCccccee
Q 037567 290 MGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYC 344 (374)
Q Consensus 290 ~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~ 344 (374)
.|+|+.+.+.||+||..|++.--.|.-.||.|.|+...+.+|---++...-.+++
T Consensus 1340 vGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniL 1394 (1958)
T KOG0391|consen 1340 VGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENIL 1394 (1958)
T ss_pred cccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHH
Confidence 9999999999999999999988889999999999877666655444444333333
No 149
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.72 E-value=2.2e-17 Score=153.92 Aligned_cols=311 Identities=17% Similarity=0.155 Sum_probs=212.4
Q ss_pred CCCchhHHHHHHHHHc----CCCEEEEccCCCCchhh------hhccccccCCcEEEEcchHHHHHHHHHHHHHcCCceE
Q 037567 12 SVFRPYQKDVIQRIIE----KRDCLVVMATGSGKSLC------YQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGINAE 81 (374)
Q Consensus 12 ~~~~~~Q~~~~~~~~~----~~~~l~~a~tGsGKT~~------~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 81 (374)
..+.+||...++.+.. +-+.++...+|.|||+. |++-.....++.||+||+..|.+ |..++..+...+.
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~N-W~~Ef~kWaPSv~ 471 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVN-WSSEFPKWAPSVQ 471 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCC-chhhcccccccee
Confidence 4799999999988754 34779999999999943 22333335778999999987777 8999988877665
Q ss_pred EcCCCCCch---hhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHH-
Q 037567 82 FLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRT- 157 (374)
Q Consensus 82 ~~~~~~~~~---~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~- 157 (374)
......+.. ........+.++|+++|++.+.. ....+..-.|.++||||-|++.+.. ..+...+.
T Consensus 472 ~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik----dk~lLsKI~W~yMIIDEGHRmKNa~-------~KLt~~L~t 540 (1157)
T KOG0386|consen 472 KIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK----DKALLSKISWKYMIIDEGHRMKNAI-------CKLTDTLNT 540 (1157)
T ss_pred eeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC----CHHHHhccCCcceeecccccccchh-------hHHHHHhhc
Confidence 443333222 22334455889999999998765 1133444578899999999998744 22332222
Q ss_pred hcCCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccC-----------------------------------------
Q 037567 158 FLLGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFD----------------------------------------- 196 (374)
Q Consensus 158 ~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------- 196 (374)
.....+.+++|+||..+..++++..+...-+.+......
T Consensus 541 ~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRR 620 (1157)
T KOG0386|consen 541 HYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRR 620 (1157)
T ss_pred cccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHh
Confidence 444667899999988776554444332111111100000
Q ss_pred ----------------------------------------------------------------CCcee----EEEEeec
Q 037567 197 ----------------------------------------------------------------RKNLF----YGVKVIN 208 (374)
Q Consensus 197 ----------------------------------------------------------------~~~~~----~~~~~~~ 208 (374)
.+... ..+....
T Consensus 621 lKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~ 700 (1157)
T KOG0386|consen 621 LKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHY 700 (1157)
T ss_pred hhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhcccccccc
Confidence 00000 0000000
Q ss_pred CC-----cchHHHHHHHHHHhh-cCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCe---
Q 037567 209 RG-----QSFVDELVQEILKSV-AGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEI--- 279 (374)
Q Consensus 209 ~~-----~~~~~~~~~~~~~~~-~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~--- 279 (374)
.. ..-..+++..++.++ ..+.+++.|+........+...|.-.++....+.|.+..++|...+..|+....
T Consensus 701 ~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf 780 (1157)
T KOG0386|consen 701 DIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYF 780 (1157)
T ss_pred ChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCcee
Confidence 00 011123344443333 246789999999888888999998888889999999999999999999998643
Q ss_pred eEEEEeccccccccccCccEEEEECCCCChhHHHHhhccCCCCCCceEEEEEeec
Q 037567 280 RVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYAR 334 (374)
Q Consensus 280 ~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 334 (374)
..|.+|.+.+.|+|+..++.||.++..|++....|+-.||.|.|+..-+-++...
T Consensus 781 ~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~ 835 (1157)
T KOG0386|consen 781 IFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLI 835 (1157)
T ss_pred eeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeee
Confidence 3567999999999999999999999999999999999999999987766555443
No 150
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.71 E-value=4.9e-16 Score=139.95 Aligned_cols=119 Identities=17% Similarity=0.190 Sum_probs=97.6
Q ss_pred cCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhc--CCeeE-EEEeccccccccccCccEEEE
Q 037567 226 AGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIR--DEIRV-MVATMAFGMGIDKPDVRHVIH 302 (374)
Q Consensus 226 ~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~i-lv~t~~~~~G~d~~~~~~vi~ 302 (374)
..+.+++|...=.+...-+...+++.|.....+||....++|+.+++.|+. |..+| |++-.+.+.|+|+-+.+|+|.
T Consensus 744 ~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlil 823 (901)
T KOG4439|consen 744 SSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLIL 823 (901)
T ss_pred cccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEE
Confidence 356677776666666778888899999999999999999999999999996 33444 456668899999999999999
Q ss_pred ECCCCChhHHHHhhccCCCCCCceEEEEEeeccCCCcccceeccccchHHH
Q 037567 303 YGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQR 353 (374)
Q Consensus 303 ~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (374)
+++-|++.--.|.+.|..|.||...+++. +.++.+..+....
T Consensus 824 vDlHWNPaLEqQAcDRIYR~GQkK~V~Ih---------R~~~~gTvEqrV~ 865 (901)
T KOG4439|consen 824 VDLHWNPALEQQACDRIYRMGQKKDVFIH---------RLMCKGTVEQRVK 865 (901)
T ss_pred EecccCHHHHHHHHHHHHHhcccCceEEE---------EEEecCcHHHHHH
Confidence 99999999999999999999998877765 5666666555443
No 151
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.70 E-value=1.2e-15 Score=143.77 Aligned_cols=295 Identities=11% Similarity=-0.006 Sum_probs=180.7
Q ss_pred EEEccCCCCchhhhhccc---cccCCcEEEEcchHHHHHHHHHHHHH-cC-CceEEcCCCCCchh---hhhhhhcCCeeE
Q 037567 32 LVVMATGSGKSLCYQLPP---LVTGKTALVVSPLISLMQDQVMSLKQ-RG-INAEFLGSAQTDSS---VQTKAETGYFQL 103 (374)
Q Consensus 32 l~~a~tGsGKT~~~~l~~---~~~~~~~lil~P~~~l~~q~~~~~~~-~~-~~~~~~~~~~~~~~---~~~~~~~~~~~i 103 (374)
+..+.+|||||-.|+-.+ +..++.+|+++|...|..|+.+.++. +| ..+.++++..+..+ .+.....+...|
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~I 243 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARV 243 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcE
Confidence 444446999998887554 45788999999999999999999985 45 56777877666554 344555777899
Q ss_pred EEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcc-cCcchHHHHHHHHHHHhcCCCCeeEEEeecCcccHHHHHHh
Q 037567 104 LFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEW-GHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINS 182 (374)
Q Consensus 104 ~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~ 182 (374)
+|+|-..+ ...+.++.+||+||=|.-.-. ....+...+.+...+....+.++|+.||||+-+.......
T Consensus 244 ViGtRSAv---------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~~~- 313 (665)
T PRK14873 244 VVGTRSAV---------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALVES- 313 (665)
T ss_pred EEEcceeE---------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHhc-
Confidence 99996543 234578899999999975332 2122223355666667777999999999999876532221
Q ss_pred cCCCCCeEEE---eccCCCceeEEEEe---e-----cCCcchHHHHHHHHHHhhcCCCcEEEEecchh------------
Q 037567 183 LKLKNPYVTI---ASFDRKNLFYGVKV---I-----NRGQSFVDELVQEILKSVAGAGSIIVYCMTIK------------ 239 (374)
Q Consensus 183 ~~~~~~~~~~---~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~------------ 239 (374)
+........ .....+.+...... . .........++..+.+.+..+ ++|||.|.+.
T Consensus 314 -g~~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g-qvll~lnRrGyap~l~C~~Cg~ 391 (665)
T PRK14873 314 -GWAHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHG-PVLVQVPRRGYVPSLACARCRT 391 (665)
T ss_pred -CcceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcC-cEEEEecCCCCCCeeEhhhCcC
Confidence 110000000 00111111111100 0 000113356677777777777 9999999876
Q ss_pred -----------------------------------------------HHHHHHHHHHHc--CCceeeeecCCChHHHHHH
Q 037567 240 -----------------------------------------------DVEEISKALKQL--GVKAGTYHGQMGSKAREEA 270 (374)
Q Consensus 240 -----------------------------------------------~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~ 270 (374)
-.+++.+.|++. +.++..+. +..+
T Consensus 392 ~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~d-------~d~~ 464 (665)
T PRK14873 392 PARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTSG-------GDQV 464 (665)
T ss_pred eeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEEC-------hHHH
Confidence 233444444432 22222222 2346
Q ss_pred HHhhhcCCeeEEEEec----cccccccccCccEEEEECCCC------------ChhHHHHhhccCCCCCCceEEEEEeec
Q 037567 271 HRLFIRDEIRVMVATM----AFGMGIDKPDVRHVIHYGCPK------------TLESYYQESGRCGRDGIASVCWLYYAR 334 (374)
Q Consensus 271 ~~~f~~g~~~ilv~t~----~~~~G~d~~~~~~vi~~~~p~------------s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 334 (374)
++.|. ++.+|||+|+ ++. ++++.|+..+... ....+.|..||+||...+|.+++...+
T Consensus 465 l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~~p 538 (665)
T PRK14873 465 VDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVAES 538 (665)
T ss_pred HHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEeCC
Confidence 77786 5899999999 555 3556665444321 345568999999999999999888644
Q ss_pred cCCCcccceeccccchHH
Q 037567 335 SNFAKGDFYCGESQTENQ 352 (374)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~ 352 (374)
+. ..++.+..++...+-
T Consensus 539 ~~-~~~~~l~~~d~~~F~ 555 (665)
T PRK14873 539 SL-PTVQALIRWDPVGHA 555 (665)
T ss_pred CC-HHHHHHHhCCHHHHH
Confidence 43 344555444444333
No 152
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.67 E-value=9.4e-15 Score=136.05 Aligned_cols=291 Identities=15% Similarity=0.125 Sum_probs=182.8
Q ss_pred CEEEEccCCCCchhhhhcccc----ccCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhhhhhhhcCCeeEEE
Q 037567 30 DCLVVMATGSGKSLCYQLPPL----VTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLF 105 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~l~~~----~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 105 (374)
-.++.+|+|||||......+. .+..++|+++.+++|+.+....++..+..-.....+..... .....++-++
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~----i~~~~~~rLi 126 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYI----IDGRPYDRLI 126 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeecccccc----ccccccCeEE
Confidence 348899999999976443322 35789999999999999999999987664332222222211 1112457888
Q ss_pred EcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHH----HHHHHHHhcC-CCCeeEEEeecCcccHHHHH
Q 037567 106 MTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYK----QLDKLRTFLL-GVPFVALTATATEKVRIDII 180 (374)
Q Consensus 106 ~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~i~~SaT~~~~~~~~~~ 180 (374)
++.++|.++.. ....++++||+||+-.+..+ . +...+. .++.+...+. ...+|++-|+....... ++
T Consensus 127 vqIdSL~R~~~-----~~l~~yDvVIIDEv~svL~q-L-~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvd-Fl 198 (824)
T PF02399_consen 127 VQIDSLHRLDG-----SLLDRYDVVIIDEVMSVLNQ-L-FSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVD-FL 198 (824)
T ss_pred EEehhhhhccc-----ccccccCEEEEehHHHHHHH-H-hHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHH-HH
Confidence 88888865522 23456899999999887653 1 111111 1222222222 46789999999987764 44
Q ss_pred HhcCCCCCe-EEEeccCCCceeEEEEee-------------c----------------------CCcchHHHHHHHHHHh
Q 037567 181 NSLKLKNPY-VTIASFDRKNLFYGVKVI-------------N----------------------RGQSFVDELVQEILKS 224 (374)
Q Consensus 181 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------------~----------------------~~~~~~~~~~~~~~~~ 224 (374)
..+.-.... ++...............+ . ............+...
T Consensus 199 ~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~ 278 (824)
T PF02399_consen 199 ASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLAR 278 (824)
T ss_pred HHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHHH
Confidence 444333322 332222221111111000 0 0001224566777777
Q ss_pred hcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCc--cEEEE
Q 037567 225 VAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV--RHVIH 302 (374)
Q Consensus 225 ~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~--~~vi~ 302 (374)
+..++++.||+.+.+.++.+++..+.....+..++|..+..+- +.| ++.+|++.|+.+..|+++... +.++-
T Consensus 279 L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W--~~~~VviYT~~itvG~Sf~~~HF~~~f~ 352 (824)
T PF02399_consen 279 LNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW--KKYDVVIYTPVITVGLSFEEKHFDSMFA 352 (824)
T ss_pred HhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc--cceeEEEEeceEEEEeccchhhceEEEE
Confidence 8889999999999999999999999888888888876554422 222 568999999999999998653 33444
Q ss_pred ECCC----CChhHHHHhhccCCCCCCceEEEEEeeccCCCc
Q 037567 303 YGCP----KTLESYYQESGRCGRDGIASVCWLYYARSNFAK 339 (374)
Q Consensus 303 ~~~p----~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~ 339 (374)
|-.| .++....|++||+-....+ ..+++++....+.
T Consensus 353 yvk~~~~gpd~~s~~Q~lgRvR~l~~~-ei~v~~d~~~~~~ 392 (824)
T PF02399_consen 353 YVKPMSYGPDMVSVYQMLGRVRSLLDN-EIYVYIDASGARS 392 (824)
T ss_pred EecCCCCCCcHHHHHHHHHHHHhhccC-eEEEEEecccccC
Confidence 4223 3566789999999776544 4556666554433
No 153
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.67 E-value=3.6e-15 Score=146.54 Aligned_cols=295 Identities=18% Similarity=0.126 Sum_probs=164.6
Q ss_pred CCEEEEccCCCCchhhhhcccc-----ccCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhhhhhhhcCCeeE
Q 037567 29 RDCLVVMATGSGKSLCYQLPPL-----VTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQL 103 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~~~-----~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 103 (374)
+.++|+..+|||||+++...+. ...+++++|+.+++|-.|..+.++.++..........+..+.........-.|
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~Lk~~l~~~~~~i 353 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSELKELLEDGKGKI 353 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccCHHHHHHHHhcCCCcE
Confidence 4689999999999987653322 35789999999999999999999998665544332222222223333344589
Q ss_pred EEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCeeEEEeecCcccHHHH-HHh
Q 037567 104 LFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI-INS 182 (374)
Q Consensus 104 ~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~-~~~ 182 (374)
+|||.+++...............--+||+||||+- +.| ..-..+...+++...++||+||-....... ...
T Consensus 354 i~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS-Q~G-------~~~~~~~~~~~~a~~~gFTGTPi~~~d~~tt~~~ 425 (962)
T COG0610 354 IVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS-QYG-------ELAKLLKKALKKAIFIGFTGTPIFKEDKDTTKDV 425 (962)
T ss_pred EEEEecccchhhhcccccccCCCcEEEEEechhhc-ccc-------HHHHHHHHHhccceEEEeeCCccccccccchhhh
Confidence 99999999776544211111122237889999973 222 122333555667899999999987654431 111
Q ss_pred cCCCCCeEEEecc--CCC--ceeEEEE----eecC------------------------------------CcchHH---
Q 037567 183 LKLKNPYVTIASF--DRK--NLFYGVK----VINR------------------------------------GQSFVD--- 215 (374)
Q Consensus 183 ~~~~~~~~~~~~~--~~~--~~~~~~~----~~~~------------------------------------~~~~~~--- 215 (374)
++..-........ +.. .+.+... .... ......
T Consensus 426 fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r~~~~a 505 (962)
T COG0610 426 FGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAVRLIRAA 505 (962)
T ss_pred hcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchHHHHHHH
Confidence 2211000000000 000 0000000 0000 000111
Q ss_pred -HHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCC---------c-eeee-------------ecCCChHHHHHHH
Q 037567 216 -ELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGV---------K-AGTY-------------HGQMGSKAREEAH 271 (374)
Q Consensus 216 -~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~---------~-~~~~-------------~~~~~~~~r~~~~ 271 (374)
++..+..+......++++.++++..+..+.+....... . +..+ |.. .........
T Consensus 506 ~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 584 (962)
T COG0610 506 KDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAK-LKDEKKDLI 584 (962)
T ss_pred HHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHH-HHHHHhhhh
Confidence 12222222123456788888887755555544333200 0 0000 111 112222333
Q ss_pred Hhh--hcCCeeEEEEeccccccccccCccEEEEECCCCChhHHHHhhccCCCCCC----ceEEEEEee
Q 037567 272 RLF--IRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGI----ASVCWLYYA 333 (374)
Q Consensus 272 ~~f--~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~----~g~~~~~~~ 333 (374)
..| ...+.++||.++|+-+|+|.|.+.++. ++-|.-.-..+|.+.|++|.-. .|.++-|..
T Consensus 585 ~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 585 KRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred hhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 332 235689999999999999999887776 5666777889999999999632 355554444
No 154
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.66 E-value=1.8e-16 Score=122.75 Aligned_cols=136 Identities=28% Similarity=0.296 Sum_probs=91.0
Q ss_pred CCEEEEccCCCCchhhhhccccc-----cCCcEEEEcchHHHHHHHHHHHHHcC---CceEEcCCCCCchhhhhhhhcCC
Q 037567 29 RDCLVVMATGSGKSLCYQLPPLV-----TGKTALVVSPLISLMQDQVMSLKQRG---INAEFLGSAQTDSSVQTKAETGY 100 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~~~~-----~~~~~lil~P~~~l~~q~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 100 (374)
+++++.+|||+|||..++..+.. ..+++++++|++.++.|+.+.+.... ............... .......
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 79 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQ-EKLLSGK 79 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHH-HHHhcCC
Confidence 46799999999999776655443 45899999999999999999888765 444444443322222 2233456
Q ss_pred eeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCeeEEEeec
Q 037567 101 FQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATA 171 (374)
Q Consensus 101 ~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 171 (374)
.+++++|++.+....... ......++++|+||+|.+....... ...........+.+++++||||
T Consensus 80 ~~i~i~t~~~~~~~~~~~--~~~~~~~~~iiiDE~h~~~~~~~~~----~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 80 TDIVVGTPGRLLDELERL--KLSLKKLDLLILDEAHRLLNQGFGL----LGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCEEEECcHHHHHHHHcC--CcchhcCCEEEEeCHHHHhhcchHH----HHHHHHhhCCccceEEEEeccC
Confidence 799999999775432221 1223468899999999987633221 1012333344578899999997
No 155
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.65 E-value=6.4e-16 Score=107.41 Aligned_cols=81 Identities=41% Similarity=0.628 Sum_probs=76.8
Q ss_pred HHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCCChhHHHHhhccCCCC
Q 037567 243 EISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRD 322 (374)
Q Consensus 243 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~ 322 (374)
.+++.|+..++.+..+||+++.++|..++..|.++...++++|+++++|+|+|.+++|+.+++|++...+.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46777888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 037567 323 G 323 (374)
Q Consensus 323 ~ 323 (374)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 156
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.62 E-value=2.4e-14 Score=129.42 Aligned_cols=114 Identities=21% Similarity=0.242 Sum_probs=99.2
Q ss_pred HHHHHHHHhh-cCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCe-eEEEEecccccccc
Q 037567 216 ELVQEILKSV-AGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEI-RVMVATMAFGMGID 293 (374)
Q Consensus 216 ~~~~~~~~~~-~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~-~ilv~t~~~~~G~d 293 (374)
..+.+++.++ ..+.++|+|+.-.+....+.+.|..+++....+.|.....+|..+..+|+..++ -.|++|.+.+-|||
T Consensus 1031 ~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGIN 1110 (1185)
T KOG0388|consen 1031 VVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGIN 1110 (1185)
T ss_pred eeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCccccc
Confidence 3445554444 356789999999999999999999999999999999999999999999999764 45679999999999
Q ss_pred ccCccEEEEECCCCChhHHHHhhccCCCCCCceEEE
Q 037567 294 KPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCW 329 (374)
Q Consensus 294 ~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~ 329 (374)
+...+.||+|+..|++.--.|.+.||.|.|+..-+.
T Consensus 1111 LTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvt 1146 (1185)
T KOG0388|consen 1111 LTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVT 1146 (1185)
T ss_pred ccccceEEEecCCCCcchhhHHHHHHHhccCcccee
Confidence 999999999999999999999999999999866443
No 157
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.62 E-value=1.7e-13 Score=130.53 Aligned_cols=124 Identities=19% Similarity=0.186 Sum_probs=102.0
Q ss_pred cchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccc
Q 037567 211 QSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGM 290 (374)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~ 290 (374)
......++.++.+....+.++||-+.|++..+.+++.|+..|++...++......+-+.+.+.=+.| .|.|+|+|+++
T Consensus 611 ~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAGR 688 (1112)
T PRK12901 611 REKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMAGR 688 (1112)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCcCC
Confidence 3456788888888888999999999999999999999999999887787775555555444433333 68999999999
Q ss_pred ccccc--------CccEEEEECCCCChhHHHHhhccCCCCCCceEEEEEeeccC
Q 037567 291 GIDKP--------DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN 336 (374)
Q Consensus 291 G~d~~--------~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 336 (374)
|.|+. +=-+||....+.|..--.|..||+||.|.+|..-.|++-+|
T Consensus 689 GTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 689 GTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred CcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 99996 22468888889999999999999999999999888887765
No 158
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.60 E-value=1.7e-14 Score=133.94 Aligned_cols=141 Identities=16% Similarity=0.128 Sum_probs=109.6
Q ss_pred CCCcEEEEecchhHHHHHHHHHHHc----------------------CCceeeeecCCChHHHHHHHHhhhcCC----ee
Q 037567 227 GAGSIIVYCMTIKDVEEISKALKQL----------------------GVKAGTYHGQMGSKAREEAHRLFIRDE----IR 280 (374)
Q Consensus 227 ~~~~~lVf~~~~~~~~~l~~~l~~~----------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~----~~ 280 (374)
-+.+.|||..+......+...|... |.....+.|.....+|......|++.. .-
T Consensus 1141 IGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl 1220 (1567)
T KOG1015|consen 1141 IGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARL 1220 (1567)
T ss_pred hcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEE
Confidence 4789999999998888888777532 445677899999999999999999853 23
Q ss_pred EEEEeccccccccccCccEEEEECCCCChhHHHHhhccCCCCCCceEEEEEeeccCCCcccceeccccchHHH-------
Q 037567 281 VMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQR------- 353 (374)
Q Consensus 281 ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 353 (374)
.||+|.+.+-|+|+-..+-||+++..|++.--.|.|=|+.|+||...||+|---.....-+++|+-.......
T Consensus 1221 ~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQVTKqsls~RVVDe 1300 (1567)
T KOG1015|consen 1221 FLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQVTKQSLSFRVVDE 1300 (1567)
T ss_pred EEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHHHhHhhhhhhhhhH
Confidence 6899999999999999999999999999999999999999999998888775555444455555544333221
Q ss_pred -----HHHHHHHHHHHHHh
Q 037567 354 -----TAIMESLLAAQRYC 367 (374)
Q Consensus 354 -----~~~~~~l~~~~~~~ 367 (374)
.-.+.+|.+++.|.
T Consensus 1301 qQv~Rhy~~neLteLy~fe 1319 (1567)
T KOG1015|consen 1301 QQVERHYTMNELTELYTFE 1319 (1567)
T ss_pred HHHHHHhhHhhhHHHhhcC
Confidence 22366677777765
No 159
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.59 E-value=2.9e-14 Score=123.92 Aligned_cols=102 Identities=21% Similarity=0.222 Sum_probs=90.1
Q ss_pred CCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcC-CeeE-EEEeccccccccccCccEEEEEC
Q 037567 227 GAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRD-EIRV-MVATMAFGMGIDKPDVRHVIHYG 304 (374)
Q Consensus 227 ~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~i-lv~t~~~~~G~d~~~~~~vi~~~ 304 (374)
..-+.|||....+....+.-.|.+.|++++.+.|+|++..|...++.|.+. +..| |++-.+.+.-+|+....+|+..+
T Consensus 637 ~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmD 716 (791)
T KOG1002|consen 637 RTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMD 716 (791)
T ss_pred cchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeec
Confidence 345789999999999999999999999999999999999999999999986 4555 45666888999999999999999
Q ss_pred CCCChhHHHHhhccCCCCCCceEE
Q 037567 305 CPKTLESYYQESGRCGRDGIASVC 328 (374)
Q Consensus 305 ~p~s~~~~~Q~~GR~~R~~~~g~~ 328 (374)
+=|++.--+|...|..|.||...+
T Consensus 717 PWWNpaVe~Qa~DRiHRIGQ~rPv 740 (791)
T KOG1002|consen 717 PWWNPAVEWQAQDRIHRIGQYRPV 740 (791)
T ss_pred ccccHHHHhhhhhhHHhhcCccce
Confidence 999999999999999999986533
No 160
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.57 E-value=2.4e-13 Score=130.11 Aligned_cols=91 Identities=22% Similarity=0.277 Sum_probs=68.7
Q ss_pred EEEEecchhHHHHHHHHHHHc----C--CceeeeecCCChHHHHHHHHhh----------------------hc----CC
Q 037567 231 IIVYCMTIKDVEEISKALKQL----G--VKAGTYHGQMGSKAREEAHRLF----------------------IR----DE 278 (374)
Q Consensus 231 ~lVf~~~~~~~~~l~~~l~~~----~--~~~~~~~~~~~~~~r~~~~~~f----------------------~~----g~ 278 (374)
.+|-.++++.+..+++.|.+. + +.+..+|+......|..+.+.. .+ +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 678888899888888888764 2 3367789998777776655442 11 34
Q ss_pred eeEEEEeccccccccccCccEEEEECCCCChhHHHHhhccCCCCCC
Q 037567 279 IRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGI 324 (374)
Q Consensus 279 ~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~ 324 (374)
..|+|+|+.++.|+|+ +.+.+|. -|.++...+|+.||+.|.+.
T Consensus 839 ~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred CeEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhccccccc
Confidence 5799999999999998 5666553 34568999999999999875
No 161
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.48 E-value=9.4e-13 Score=132.27 Aligned_cols=312 Identities=20% Similarity=0.188 Sum_probs=200.5
Q ss_pred CCCchhHHHHHHHHHc-----CCCEEEEccCCCCchhhhhccc---ccc----CCcEEEEcchHHHHHHHHHHHHHcCCc
Q 037567 12 SVFRPYQKDVIQRIIE-----KRDCLVVMATGSGKSLCYQLPP---LVT----GKTALVVSPLISLMQDQVMSLKQRGIN 79 (374)
Q Consensus 12 ~~~~~~Q~~~~~~~~~-----~~~~l~~a~tGsGKT~~~~l~~---~~~----~~~~lil~P~~~l~~q~~~~~~~~~~~ 79 (374)
..+++||.+.+..+.. +.+.++...+|.|||+-.+..+ ... .+++++++|+ +++.+|.+++.++-..
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~-s~~~nw~~e~~k~~~~ 415 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPA-SLLSNWKREFEKFAPD 415 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecH-HHHHHHHHHHhhhCcc
Confidence 4689999999977552 5677889999999995433222 221 4589999999 6888899999887443
Q ss_pred eE---EcCCCCCc----hhhhhhhhcC----CeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHH
Q 037567 80 AE---FLGSAQTD----SSVQTKAETG----YFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLE 148 (374)
Q Consensus 80 ~~---~~~~~~~~----~~~~~~~~~~----~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~ 148 (374)
.. ...+.... .......... .++++++|++.+.... ..........++.+|+||+|.+.+....
T Consensus 416 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~-~~~~~l~~~~~~~~v~DEa~~ikn~~s~---- 490 (866)
T COG0553 416 LRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFL-VDHGGLKKIEWDRVVLDEAHRIKNDQSS---- 490 (866)
T ss_pred ccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhh-hhHHHHhhceeeeeehhhHHHHhhhhhH----
Confidence 33 33332221 1122222221 2799999999876522 1223445567889999999998663321
Q ss_pred HHHHHHHHHhcCCCCeeEEEeecCcccHHHHHHhcC-CCCCeEEE-----------------ec----------------
Q 037567 149 YKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLK-LKNPYVTI-----------------AS---------------- 194 (374)
Q Consensus 149 ~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~-~~~~~~~~-----------------~~---------------- 194 (374)
....+. .+.....+.+|+||-.+...++...+. ...+.... ..
T Consensus 491 --~~~~l~-~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 567 (866)
T COG0553 491 --EGKALQ-FLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRK 567 (866)
T ss_pred --HHHHHH-HHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHH
Confidence 112222 333445588888874333222222111 10000000 00
Q ss_pred -----------cC------CC----------------------------------ce-eE----------EEE-------
Q 037567 195 -----------FD------RK----------------------------------NL-FY----------GVK------- 205 (374)
Q Consensus 195 -----------~~------~~----------------------------------~~-~~----------~~~------- 205 (374)
.+ .+ .. .. ...
T Consensus 568 ~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 647 (866)
T COG0553 568 LLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTR 647 (866)
T ss_pred HHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHH
Confidence 00 00 00 00 000
Q ss_pred ---e------ecCC----cc------------------------hHHHHHHHHH--HhhcCCC--cEEEEecchhHHHHH
Q 037567 206 ---V------INRG----QS------------------------FVDELVQEIL--KSVAGAG--SIIVYCMTIKDVEEI 244 (374)
Q Consensus 206 ---~------~~~~----~~------------------------~~~~~~~~~~--~~~~~~~--~~lVf~~~~~~~~~l 244 (374)
. .... .. .....+.+++ .....+. +++||++.......+
T Consensus 648 lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il 727 (866)
T COG0553 648 LRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLL 727 (866)
T ss_pred HHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHH
Confidence 0 0000 00 2233333444 2334555 899999999999999
Q ss_pred HHHHHHcCCceeeeecCCChHHHHHHHHhhhcC--CeeEEEEeccccccccccCccEEEEECCCCChhHHHHhhccCCCC
Q 037567 245 SKALKQLGVKAGTYHGQMGSKAREEAHRLFIRD--EIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRD 322 (374)
Q Consensus 245 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~ 322 (374)
...+...++....++|.++.++|+..++.|.++ ....++++.+.+.|+|+...++||++++.+++....|...|+.|.
T Consensus 728 ~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~Ri 807 (866)
T COG0553 728 EDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRI 807 (866)
T ss_pred HHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHh
Confidence 999999888899999999999999999999996 344566778999999999999999999999999999999999999
Q ss_pred CCceEEEEEe
Q 037567 323 GIASVCWLYY 332 (374)
Q Consensus 323 ~~~g~~~~~~ 332 (374)
|+...+.++-
T Consensus 808 gQ~~~v~v~r 817 (866)
T COG0553 808 GQKRPVKVYR 817 (866)
T ss_pred cCcceeEEEE
Confidence 9887665553
No 162
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.47 E-value=1.4e-13 Score=120.58 Aligned_cols=158 Identities=18% Similarity=0.136 Sum_probs=94.6
Q ss_pred hHHHHHHHHHc-------------CCCEEEEccCCCCchhhhhccccc-----c---CCcEEEEcchHHHHHHHHHHHHH
Q 037567 17 YQKDVIQRIIE-------------KRDCLVVMATGSGKSLCYQLPPLV-----T---GKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 17 ~Q~~~~~~~~~-------------~~~~l~~a~tGsGKT~~~~l~~~~-----~---~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
||.+++..++. .+.+++...+|+|||+..+..+.. + ..++||++|. .+..||..++.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 68888877642 356788889999999776544331 1 1259999999 888999999998
Q ss_pred cCC----ceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccC-chhhHHHHHhcCccEEEEeccchhhcccCcchHHHH
Q 037567 76 RGI----NAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACII-PISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYK 150 (374)
Q Consensus 76 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~-~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~ 150 (374)
+.. ++....+.. .............+++|+|++.+... .......+...++++||+||+|.+.+... .
T Consensus 80 ~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s------~ 152 (299)
T PF00176_consen 80 WFDPDSLRVIIYDGDS-ERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDS------K 152 (299)
T ss_dssp HSGT-TS-EEEESSSC-HHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTS------H
T ss_pred cccccccccccccccc-ccccccccccccceeeeccccccccccccccccccccccceeEEEecccccccccc------c
Confidence 752 233333322 12222223345678999999988711 11222334445699999999999965442 2
Q ss_pred HHHHHHHhcCCCCeeEEEeecCcccHHHHHHhc
Q 037567 151 QLDKLRTFLLGVPFVALTATATEKVRIDIINSL 183 (374)
Q Consensus 151 ~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~ 183 (374)
....+.. +....++++||||..+...++...+
T Consensus 153 ~~~~l~~-l~~~~~~lLSgTP~~n~~~dl~~~l 184 (299)
T PF00176_consen 153 RYKALRK-LRARYRWLLSGTPIQNSLEDLYSLL 184 (299)
T ss_dssp HHHHHHC-CCECEEEEE-SS-SSSGSHHHHHHH
T ss_pred ccccccc-cccceEEeeccccccccccccccch
Confidence 2233333 4577889999999988765555543
No 163
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.45 E-value=4.2e-14 Score=104.45 Aligned_cols=133 Identities=15% Similarity=0.079 Sum_probs=76.5
Q ss_pred CCCEEEEccCCCCchhhhhcc----ccccCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhhhhhhhcCCeeE
Q 037567 28 KRDCLVVMATGSGKSLCYQLP----PLVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQL 103 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~----~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 103 (374)
|+--++-.+||+|||.-.+.. .+.++.++||+.|||.+++++.+.++....... ...... ...+..-|
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~~~~~--t~~~~~------~~~g~~~i 75 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLPVRFH--TNARMR------THFGSSII 75 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSSEEEE--STTSS----------SSSSE
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCCcccC--ceeeec------cccCCCcc
Confidence 444578899999999754433 344799999999999999999999986643332 211111 11233467
Q ss_pred EEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCeeEEEeecCccc
Q 037567 104 LFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175 (374)
Q Consensus 104 ~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~ 175 (374)
-++|+..+...+.. .....++++||+||||.....+...+ ..+... .......+|+|||||+...
T Consensus 76 ~vMc~at~~~~~~~---p~~~~~yd~II~DEcH~~Dp~sIA~r---g~l~~~-~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 76 DVMCHATYGHFLLN---PCRLKNYDVIIMDECHFTDPTSIAAR---GYLREL-AESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp EEEEHHHHHHHHHT---SSCTTS-SEEEECTTT--SHHHHHHH---HHHHHH-HHTTS-EEEEEESS-TT--
T ss_pred cccccHHHHHHhcC---cccccCccEEEEeccccCCHHHHhhh---eeHHHh-hhccCeeEEEEeCCCCCCC
Confidence 78888765543322 23346899999999998654332211 122222 2223467999999999764
No 164
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.36 E-value=1.5e-10 Score=102.86 Aligned_cols=243 Identities=9% Similarity=0.093 Sum_probs=153.5
Q ss_pred CeeEEEEcCcccccCchh----hHHHHHhcCccEEEEeccchhhcccCcc----------------hHHHHHHHHHHHhc
Q 037567 100 YFQLLFMTPEKACIIPIS----FWSKLLKAGVCLFAVDEAHCISEWGHDF----------------RLEYKQLDKLRTFL 159 (374)
Q Consensus 100 ~~~i~i~T~~~l~~~~~~----~~~~~~~~~~~~vviDE~h~~~~~~~~~----------------~~~~~~~~~~~~~~ 159 (374)
..||+|++|=-|...+.. ....-.++++.++|+|.+|.+.-.+.+. ...++++....-.-
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg 210 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLDG 210 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcC
Confidence 559999999766443331 2233457889999999999986321100 01112221111100
Q ss_pred ---CCCCeeEEEeecCcccHHHHHHhcC-CCCCeEEEec-----------cCCCceeEEEEeec---CCcchH----HHH
Q 037567 160 ---LGVPFVALTATATEKVRIDIINSLK-LKNPYVTIAS-----------FDRKNLFYGVKVIN---RGQSFV----DEL 217 (374)
Q Consensus 160 ---~~~~~i~~SaT~~~~~~~~~~~~~~-~~~~~~~~~~-----------~~~~~~~~~~~~~~---~~~~~~----~~~ 217 (374)
.-.|.|++|+...+....-+..... .......... .........+.... ..+... ..+
T Consensus 211 ~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~i 290 (442)
T PF06862_consen 211 QAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKI 290 (442)
T ss_pred cchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHH
Confidence 0257899999988876533333111 1111111111 11122222222111 111122 233
Q ss_pred HHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEecccc--cccccc
Q 037567 218 VQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFG--MGIDKP 295 (374)
Q Consensus 218 ~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~--~G~d~~ 295 (374)
+..+.+ -...+.+|||+++.-+--.+.+.|++.++..+.+|...+..+-...-..|..|+..+|+.|.-+. +=..+.
T Consensus 291 LP~l~~-~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~ir 369 (442)
T PF06862_consen 291 LPQLKR-DSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIR 369 (442)
T ss_pred HHHhhh-ccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceec
Confidence 333332 23668899999999999999999999999999999999999999999999999999999998443 566788
Q ss_pred CccEEEEECCCCChhHHHHhhccCCCCCC------ceEEEEEeeccCCCcccce
Q 037567 296 DVRHVIHYGCPKTLESYYQESGRCGRDGI------ASVCWLYYARSNFAKGDFY 343 (374)
Q Consensus 296 ~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~------~g~~~~~~~~~~~~~~~~~ 343 (374)
++++||+|++|..+.-|...++-.+.... ...|.++|++-|.-.++.+
T Consensus 370 Gi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 370 GIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred CCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 89999999999999888777755444332 5788999988765444444
No 165
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.33 E-value=2.3e-11 Score=114.53 Aligned_cols=322 Identities=20% Similarity=0.194 Sum_probs=193.3
Q ss_pred hHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc---cCCcEEEEcchHHHHHHHHHHH----HH
Q 037567 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV---TGKTALVVSPLISLMQDQVMSL----KQ 75 (374)
Q Consensus 3 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~---~~~~~lil~P~~~l~~q~~~~~----~~ 75 (374)
++-++++|+. ++. .+.+..+.-...-+..+-||-|||+++.+|+.- .++.+.+++...-|+.--..++ .-
T Consensus 71 Ea~~Rvlg~~-~~d--VQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~~ 147 (822)
T COG0653 71 EASKRVLGMR-HFD--VQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYEF 147 (822)
T ss_pred HHHHHhcCCC-hhh--HHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHHH
Confidence 3445666664 333 455555555666699999999999998877653 4777889998888886434333 44
Q ss_pred cCCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccC-c----hhhHHHHHhcCccEEEEeccchhh-c--------c
Q 037567 76 RGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACII-P----ISFWSKLLKAGVCLFAVDEAHCIS-E--------W 141 (374)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~-~----~~~~~~~~~~~~~~vviDE~h~~~-~--------~ 141 (374)
.|+.+.+.......... .....+||..+|..-+..- + ..........+..+.|+||++.+. + .
T Consensus 148 LGlsvG~~~~~m~~~ek---~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiIS 224 (822)
T COG0653 148 LGLSVGVILAGMSPEEK---RAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIIS 224 (822)
T ss_pred cCCceeeccCCCChHHH---HHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeee
Confidence 58888877766544332 2334579999998755321 1 111123334567889999999874 1 0
Q ss_pred c-Ccc-hHHHHHHHHHHHhcC---------CCCee---------------------------------------------
Q 037567 142 G-HDF-RLEYKQLDKLRTFLL---------GVPFV--------------------------------------------- 165 (374)
Q Consensus 142 ~-~~~-~~~~~~~~~~~~~~~---------~~~~i--------------------------------------------- 165 (374)
| ... ...+..+..+...+. ..+.+
T Consensus 225 G~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~ 304 (822)
T COG0653 225 GPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDV 304 (822)
T ss_pred cccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCC
Confidence 1 000 011111111111110 01112
Q ss_pred ----------------------------------------------------------------EEEeecCcccHHHHHH
Q 037567 166 ----------------------------------------------------------------ALTATATEKVRIDIIN 181 (374)
Q Consensus 166 ----------------------------------------------------------------~~SaT~~~~~~~~~~~ 181 (374)
+||+|...... ++..
T Consensus 305 dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~-EF~~ 383 (822)
T COG0653 305 DYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEE-EFDV 383 (822)
T ss_pred eeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhh-hhhh
Confidence 22222211111 1122
Q ss_pred hcCCCCCeEEEeccCCCc--eeEEEEeecCCcchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeee
Q 037567 182 SLKLKNPYVTIASFDRKN--LFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYH 259 (374)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~ 259 (374)
.+++ .+.....+++. .......+........+++.++......++++||-+.+.+..+.+.+.|.+.|++-..++
T Consensus 384 iY~l---~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLN 460 (822)
T COG0653 384 IYGL---DVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLN 460 (822)
T ss_pred ccCC---ceeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeec
Confidence 2211 11222222222 222223344555677888999988888999999999999999999999999999887787
Q ss_pred cCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCcc-----------EEEEECCCCChhHHHHhhccCCCCCCceEE
Q 037567 260 GQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR-----------HVIHYGCPKTLESYYQESGRCGRDGIASVC 328 (374)
Q Consensus 260 ~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~-----------~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~ 328 (374)
......+-+.+.+.-.. -.|-|+|+|+++|.|+.--. +||-..--.|..--.|.-||+||.|.+|..
T Consensus 461 Ak~h~~EA~Iia~AG~~--gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S 538 (822)
T COG0653 461 AKNHAREAEIIAQAGQP--GAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSS 538 (822)
T ss_pred cccHHHHHHHHhhcCCC--CccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchh
Confidence 77554444444433333 35889999999999984322 244444444555557999999999999877
Q ss_pred EEEeeccC
Q 037567 329 WLYYARSN 336 (374)
Q Consensus 329 ~~~~~~~~ 336 (374)
-.+++-+|
T Consensus 539 ~F~lSleD 546 (822)
T COG0653 539 RFYLSLED 546 (822)
T ss_pred hhhhhhHH
Confidence 66665544
No 166
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.12 E-value=2.7e-09 Score=98.22 Aligned_cols=118 Identities=16% Similarity=0.169 Sum_probs=96.3
Q ss_pred CCCcEEEEecchhHHHHHHHHHHHcCCc------------------eeeeecCCChHHHHHHHHhhhcCC---eeEEEEe
Q 037567 227 GAGSIIVYCMTIKDVEEISKALKQLGVK------------------AGTYHGQMGSKAREEAHRLFIRDE---IRVMVAT 285 (374)
Q Consensus 227 ~~~~~lVf~~~~~~~~~l~~~l~~~~~~------------------~~~~~~~~~~~~r~~~~~~f~~g~---~~ilv~t 285 (374)
.+.++|||..+......+.+.|.+..++ -..+.|..+..+|++++++|++.. .-++++|
T Consensus 718 ~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllst 797 (1387)
T KOG1016|consen 718 IGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLST 797 (1387)
T ss_pred cCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehh
Confidence 3568999999999999999988775222 235677888999999999999752 4567789
Q ss_pred ccccccccccCccEEEEECCCCChhHHHHhhccCCCCCCceEEEEEeeccCCCccccee
Q 037567 286 MAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYC 344 (374)
Q Consensus 286 ~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~ 344 (374)
.+.+.|+|+-..+-++.++..|++..-.|.+-|+.|.|+...|+++----|...-++++
T Consensus 798 rag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIy 856 (1387)
T KOG1016|consen 798 RAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIY 856 (1387)
T ss_pred ccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHH
Confidence 99999999988888888999999999999999999999999998887666655555554
No 167
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=3.1e-09 Score=93.88 Aligned_cols=116 Identities=15% Similarity=0.179 Sum_probs=92.1
Q ss_pred CCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEecccc--ccccccCccEEEEECC
Q 037567 228 AGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFG--MGIDKPDVRHVIHYGC 305 (374)
Q Consensus 228 ~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~--~G~d~~~~~~vi~~~~ 305 (374)
...+|||.|+.-+--++.+.+++.++..+.+|...+...-...-+.|..|...+++.|.-+. +-.++.+++.||+|.+
T Consensus 552 ~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqp 631 (698)
T KOG2340|consen 552 ESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQP 631 (698)
T ss_pred cCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecC
Confidence 34689999999999999999999998888888888888777888889999999999998554 5778999999999999
Q ss_pred CCChhHH---HHhhccCCCCC----CceEEEEEeeccCCCcccce
Q 037567 306 PKTLESY---YQESGRCGRDG----IASVCWLYYARSNFAKGDFY 343 (374)
Q Consensus 306 p~s~~~~---~Q~~GR~~R~~----~~g~~~~~~~~~~~~~~~~~ 343 (374)
|.++.-| +-+++|+.-.| ..-.|.++|++.|.-.+..+
T Consensus 632 P~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~i 676 (698)
T KOG2340|consen 632 PNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENI 676 (698)
T ss_pred CCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHh
Confidence 9988655 55555554333 23477888888765444443
No 168
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.95 E-value=3.4e-07 Score=86.18 Aligned_cols=68 Identities=26% Similarity=0.340 Sum_probs=51.7
Q ss_pred cCCCCCchhHHHHHHHHHc----CCCEEEEccCCCCchhhhhccccc---------------------------------
Q 037567 9 FGYSVFRPYQKDVIQRIIE----KRDCLVVMATGSGKSLCYQLPPLV--------------------------------- 51 (374)
Q Consensus 9 ~~~~~~~~~Q~~~~~~~~~----~~~~l~~a~tGsGKT~~~~l~~~~--------------------------------- 51 (374)
|.| +|+|-|...+..++. +.++++..|||+|||++.+...+.
T Consensus 18 fP~-qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~ 96 (945)
T KOG1132|consen 18 FPF-QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEK 96 (945)
T ss_pred ccC-CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCc
Confidence 556 489999888877764 678999999999999775433220
Q ss_pred ------c------CCcEEEEcchHHHHHHHHHHHHHcC
Q 037567 52 ------T------GKTALVVSPLISLMQDQVMSLKQRG 77 (374)
Q Consensus 52 ------~------~~~~lil~P~~~l~~q~~~~~~~~~ 77 (374)
. .+++++-.-|..-..|+.+++++.+
T Consensus 97 s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 97 SEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred hhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 0 3467888888888999999998753
No 169
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.92 E-value=5.5e-11 Score=112.57 Aligned_cols=243 Identities=17% Similarity=0.177 Sum_probs=142.9
Q ss_pred CCCEEEEccCCCCchhhhhccccc-----cCCcEEEEcchHHHHHHHHHHHHHc----CCceEEcCCCCCchhhhhhhhc
Q 037567 28 KRDCLVVMATGSGKSLCYQLPPLV-----TGKTALVVSPLISLMQDQVMSLKQR----GINAEFLGSAQTDSSVQTKAET 98 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~~~-----~~~~~lil~P~~~l~~q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 98 (374)
..++++-+|||+|||+.+.+++.. ...++++++|-++|+.....++... |++..-..+...... ..-
T Consensus 943 d~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tgd~~pd~----~~v 1018 (1230)
T KOG0952|consen 943 DLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTGDVTPDV----KAV 1018 (1230)
T ss_pred chhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeEeccCccCCCh----hhe
Confidence 356789999999999999887764 3789999999999988766665543 555555555443331 112
Q ss_pred CCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcc-cCcchHHHHHHHHHHH-hcCCCCeeEEEeecCcccH
Q 037567 99 GYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEW-GHDFRLEYKQLDKLRT-FLLGVPFVALTATATEKVR 176 (374)
Q Consensus 99 ~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~i~~SaT~~~~~~ 176 (374)
...+++|+||++.....++|.....+.++..+|+||.|.+.+. |.-........+.+.. .-+..+.+++|--+...
T Consensus 1019 ~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~na-- 1096 (1230)
T KOG0952|consen 1019 READIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALANA-- 1096 (1230)
T ss_pred ecCceEEcccccccCccccccchhhhccccceeecccccccCCCcceEEEEeeccccCccccCcchhhhhHhhhhhcc--
Confidence 3358999999999999999889999999999999999998652 3221111111111111 11234556665333332
Q ss_pred HHHHHhcCCCCCeEEEeccCCCceeEEEEee------cCCcchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHH-
Q 037567 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVI------NRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALK- 249 (374)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~- 249 (374)
.++..|++..+..-..++.........+.-+ ......-.. ....++...+..+++||+.+......-+..|-
T Consensus 1097 ~dla~wl~~~~~~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkp-a~qaik~~sp~~p~lifv~srrqtrlta~~li~ 1175 (1230)
T KOG0952|consen 1097 NDLADWLNIKDMYNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKP-AFQAIKTHSPIKPVLIFVSSRRQTRLTALDLIA 1175 (1230)
T ss_pred HHHHHHhCCCCcCCCCcccccCCceEeecCCCchhcchhhhhcccH-HHHHHhcCCCCCceEEEeecccccccchHhHHh
Confidence 2678888877662222222222222222211 121222222 33344555688999999998775443333332
Q ss_pred ---HcCCceeeeecCCChHHHHHHHHhhhcCCe
Q 037567 250 ---QLGVKAGTYHGQMGSKAREEAHRLFIRDEI 279 (374)
Q Consensus 250 ---~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 279 (374)
...-+..+++.+ ..+-+.++....+...
T Consensus 1176 ~~~~~~~p~~fl~~d--e~e~e~~~~~~~d~~L 1206 (1230)
T KOG0952|consen 1176 SCATEDNPKQFLNMD--ELELEIIMSKVRDTNL 1206 (1230)
T ss_pred hccCCCCchhccCCC--HHHHHHHHHHhcccch
Confidence 222223344433 5566666666655443
No 170
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.90 E-value=1.9e-08 Score=97.43 Aligned_cols=45 Identities=24% Similarity=0.279 Sum_probs=42.3
Q ss_pred CeeEEEEeccccccccccCccEEEEECCCCChhHHHHhhccCCCC
Q 037567 278 EIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRD 322 (374)
Q Consensus 278 ~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~ 322 (374)
..+.+++-+++.+|+|.|++-.++.+....|...-.|.+||..|.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~ 545 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRL 545 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceec
Confidence 678999999999999999999999999888999999999999996
No 171
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.83 E-value=1.8e-08 Score=84.90 Aligned_cols=63 Identities=25% Similarity=0.348 Sum_probs=48.6
Q ss_pred CCchhHHHHHHHHHcCCC-EEEEccCCCCchhhh--hcc-c--------cccCCcEEEEcchHHHHHHHHHHHHH
Q 037567 13 VFRPYQKDVIQRIIEKRD-CLVVMATGSGKSLCY--QLP-P--------LVTGKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~~~-~l~~a~tGsGKT~~~--~l~-~--------~~~~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
++.+.|.+|+..++.... .++.||+|+|||.+. ++. + ...+.++|+++|+...+++..+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 467899999999999888 899999999999432 222 2 34688999999999999999988877
No 172
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.82 E-value=3.1e-08 Score=78.22 Aligned_cols=107 Identities=26% Similarity=0.345 Sum_probs=75.6
Q ss_pred CCCcEEEEecchhHHHHHHHHHHHcCC--ceeeeecCCChHHHHHHHHhhhcCCeeEEEEec--cccccccccC--ccEE
Q 037567 227 GAGSIIVYCMTIKDVEEISKALKQLGV--KAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM--AFGMGIDKPD--VRHV 300 (374)
Q Consensus 227 ~~~~~lVf~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~--~~~~G~d~~~--~~~v 300 (374)
..++++||+++....+.+.+.++.... ....+.. +..+...+++.|..++-.||+++. .+++|+|+|+ ++.|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 459999999999999999999986532 1223332 366888999999999989999999 9999999998 7789
Q ss_pred EEECCCCC------------------------------hhHHHHhhccCCCCCCceEEEEEeecc
Q 037567 301 IHYGCPKT------------------------------LESYYQESGRCGRDGIASVCWLYYARS 335 (374)
Q Consensus 301 i~~~~p~s------------------------------~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 335 (374)
|..+.|.. .....|.+||+-|..++-.+++++++.
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 98888841 233478899999987766566666553
No 173
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.72 E-value=2.7e-08 Score=83.39 Aligned_cols=132 Identities=20% Similarity=0.198 Sum_probs=86.7
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc---cCCcEEEEcchHHHHHHHHHHHH----
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV---TGKTALVVSPLISLMQDQVMSLK---- 74 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~---~~~~~lil~P~~~l~~q~~~~~~---- 74 (374)
.++.++..|+. |++.|.-+.-.+.+|+ ++...||-|||++..+++.. .+..|-|++.+..|+..-++++.
T Consensus 67 rea~~r~~g~~-p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~ 143 (266)
T PF07517_consen 67 REAARRTLGLR-PYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYE 143 (266)
T ss_dssp HHHHHHHTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCc-ccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHH
Confidence 35566777874 8899988888876666 99999999999887666543 58889999999999986666554
Q ss_pred HcCCceEEcCCCCCchhhhhhhhcCCeeEEEEcCccccc-CchhhH----HHHHhcCccEEEEeccchhh
Q 037567 75 QRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACI-IPISFW----SKLLKAGVCLFAVDEAHCIS 139 (374)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~-~~~~~~----~~~~~~~~~~vviDE~h~~~ 139 (374)
.+|+.+............. ....++|+++|...+.. +++... ......+++++||||++.+.
T Consensus 144 ~LGlsv~~~~~~~~~~~r~---~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 144 FLGLSVGIITSDMSSEERR---EAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HTT--EEEEETTTEHHHHH---HHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HhhhccccCccccCHHHHH---HHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 4688888877655433221 22346899999986643 111100 11123678899999999874
No 174
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.72 E-value=5.5e-08 Score=91.29 Aligned_cols=307 Identities=16% Similarity=0.167 Sum_probs=176.7
Q ss_pred hHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc----c----CCcEEEEcchHHHHHHHHHHHHHc-CCceEEcCCCC
Q 037567 17 YQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV----T----GKTALVVSPLISLMQDQVMSLKQR-GINAEFLGSAQ 87 (374)
Q Consensus 17 ~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~----~----~~~~lil~P~~~l~~q~~~~~~~~-~~~~~~~~~~~ 87 (374)
+-+.+++.+..+.-+++.+.||+|||.-+.--++. + ...+.+.-|++-.+.-+.+++.+- +-..+-..+..
T Consensus 382 ~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~ 461 (1282)
T KOG0921|consen 382 YRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYN 461 (1282)
T ss_pred HHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhccccccc
Confidence 44566667777788899999999999554333332 1 345677778887777777666532 11111111111
Q ss_pred CchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCeeEE
Q 037567 88 TDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVAL 167 (374)
Q Consensus 88 ~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 167 (374)
........ ...-.|+.+|.+-+.+...+ -+..+.++++||.|...-.+. .....+..+....+....++|
T Consensus 462 vRf~Sa~p--rpyg~i~fctvgvllr~~e~-----glrg~sh~i~deiherdv~~d---fll~~lr~m~~ty~dl~v~lm 531 (1282)
T KOG0921|consen 462 VRFDSATP--RPYGSIMFCTVGVLLRMMEN-----GLRGISHVIIDEIHERDVDTD---FVLIVLREMISTYRDLRVVLM 531 (1282)
T ss_pred cccccccc--ccccceeeeccchhhhhhhh-----cccccccccchhhhhhccchH---HHHHHHHhhhccchhhhhhhh
Confidence 11111110 01125888999887766443 345677999999998643332 122333444555556778888
Q ss_pred EeecCcccHHHHHHhc-------------------CCCCCeEEEeccCCCc----------eeE-----EEEeec-----
Q 037567 168 TATATEKVRIDIINSL-------------------KLKNPYVTIASFDRKN----------LFY-----GVKVIN----- 208 (374)
Q Consensus 168 SaT~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~----------~~~-----~~~~~~----- 208 (374)
|||........+.... ..... ...++..... ... ......
T Consensus 532 satIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~-~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~ 610 (1282)
T KOG0921|consen 532 SATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMT-QFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYN 610 (1282)
T ss_pred hcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhh-hccCCCcCccchhhcccccCchhhhcccccccccChhhc
Confidence 8886654322111100 00000 0000000000 000 000000
Q ss_pred ----------CCcchHHHHHHHHHHhh---cCCCcEEEEecchhHHHHHHHHHHHc-------CCceeeeecCCChHHHH
Q 037567 209 ----------RGQSFVDELVQEILKSV---AGAGSIIVYCMTIKDVEEISKALKQL-------GVKAGTYHGQMGSKARE 268 (374)
Q Consensus 209 ----------~~~~~~~~~~~~~~~~~---~~~~~~lVf~~~~~~~~~l~~~l~~~-------~~~~~~~~~~~~~~~r~ 268 (374)
........++..++... .-.+-++||.+.....-.|...+... .+.....|+.....+..
T Consensus 611 ~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqr 690 (1282)
T KOG0921|consen 611 ESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQR 690 (1282)
T ss_pred chhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhh
Confidence 00011112222222222 23467999999999999988888664 34577889988888888
Q ss_pred HHHHhhhcCCeeEEEEeccccccccccCccEEEEECCC------------------CChhHHHHhhccCCCCCCceEEEE
Q 037567 269 EAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCP------------------KTLESYYQESGRCGRDGIASVCWL 330 (374)
Q Consensus 269 ~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p------------------~s~~~~~Q~~GR~~R~~~~g~~~~ 330 (374)
++.+....|..+++++|.+....+.+.++..|++...- .|....+||.||+||.. +|.|+.
T Consensus 691 kvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR-~G~~f~ 769 (1282)
T KOG0921|consen 691 KVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVR-PGFCFH 769 (1282)
T ss_pred hccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceec-cccccc
Confidence 88888888999999999999998888776666533211 25677899999999974 666776
Q ss_pred Eeecc
Q 037567 331 YYARS 335 (374)
Q Consensus 331 ~~~~~ 335 (374)
+...-
T Consensus 770 lcs~a 774 (1282)
T KOG0921|consen 770 LCSRA 774 (1282)
T ss_pred ccHHH
Confidence 66553
No 175
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.70 E-value=5.8e-08 Score=88.33 Aligned_cols=81 Identities=12% Similarity=0.188 Sum_probs=67.6
Q ss_pred hHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcccc----ccCCcEEEEcchHHHHHHHHHHHHHcCC
Q 037567 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL----VTGKTALVVSPLISLMQDQVMSLKQRGI 78 (374)
Q Consensus 3 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~----~~~~~~lil~P~~~l~~q~~~~~~~~~~ 78 (374)
+.|.. +++.++..-|..|..++++..-.++.||+|+|||.+....+. +...++|+++|+...++|..+.+.+-|+
T Consensus 401 ~~~s~-~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~tgL 479 (935)
T KOG1802|consen 401 RRFSV-PNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKTGL 479 (935)
T ss_pred hhhcC-CCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhcCc
Confidence 44444 889999999999999999999999999999999966433322 3588999999999999999999998887
Q ss_pred ceEEcC
Q 037567 79 NAEFLG 84 (374)
Q Consensus 79 ~~~~~~ 84 (374)
++..+.
T Consensus 480 KVvRl~ 485 (935)
T KOG1802|consen 480 KVVRLC 485 (935)
T ss_pred eEeeee
Confidence 775443
No 176
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.70 E-value=8.7e-08 Score=80.55 Aligned_cols=161 Identities=17% Similarity=0.031 Sum_probs=100.2
Q ss_pred CCchhHHHHHHHHHc----------CCCEEEEccCCCCchhhhhccccc----cCCcEEEEcchHHHHHHHHHHHHHcCC
Q 037567 13 VFRPYQKDVIQRIIE----------KRDCLVVMATGSGKSLCYQLPPLV----TGKTALVVSPLISLMQDQVMSLKQRGI 78 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~----------~~~~l~~a~tGsGKT~~~~l~~~~----~~~~~lil~P~~~l~~q~~~~~~~~~~ 78 (374)
.+...|.+++-...+ ...+++-..||.||-....-.++. -.++.++++.+.+|..+..++++..|.
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DIG~ 116 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDIGA 116 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHhCC
Confidence 478889888866543 234566666999999654444433 356799999999999999999998765
Q ss_pred ceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCch------hhHHHH---HhcCc-cEEEEeccchhhcccCc---c
Q 037567 79 NAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPI------SFWSKL---LKAGV-CLFAVDEAHCISEWGHD---F 145 (374)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~------~~~~~~---~~~~~-~~vviDE~h~~~~~~~~---~ 145 (374)
....+..-........ ..-...|+++|+..|..-.. .....+ ....+ .+||+||||...+.... .
T Consensus 117 ~~i~v~~l~~~~~~~~--~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~ 194 (303)
T PF13872_consen 117 DNIPVHPLNKFKYGDI--IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKP 194 (303)
T ss_pred CcccceechhhccCcC--CCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccc
Confidence 4322211111110000 11133699999988765421 111211 11222 48999999998663221 1
Q ss_pred hHHHHHHHHHHHhcCCCCeeEEEeecCccc
Q 037567 146 RLEYKQLDKLRTFLLGVPFVALTATATEKV 175 (374)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~ 175 (374)
...-....++.+.+|+.+++++|||...+.
T Consensus 195 sk~g~avl~LQ~~LP~ARvvY~SATgasep 224 (303)
T PF13872_consen 195 SKTGIAVLELQNRLPNARVVYASATGASEP 224 (303)
T ss_pred cHHHHHHHHHHHhCCCCcEEEecccccCCC
Confidence 122245566778889999999999977654
No 177
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.69 E-value=3.6e-07 Score=85.71 Aligned_cols=46 Identities=26% Similarity=0.306 Sum_probs=42.7
Q ss_pred CCeeEEEEeccccccccccCccEEEEECCCCChhHHHHhhccCCCC
Q 037567 277 DEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRD 322 (374)
Q Consensus 277 g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~ 322 (374)
...+.+++-.++-+|+|-|++-.++-+....|...-.|-+||..|.
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRL 527 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRL 527 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceee
Confidence 3478999999999999999999999999999999999999999995
No 178
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.62 E-value=6.9e-08 Score=83.20 Aligned_cols=68 Identities=21% Similarity=0.327 Sum_probs=55.5
Q ss_pred HcCCCCCchhHHHHHHH----HHcCCCEEEEccCCCCchhhhhccccc----cCC-----cEEEEcchHHHHHHHHHHHH
Q 037567 8 YFGYSVFRPYQKDVIQR----IIEKRDCLVVMATGSGKSLCYQLPPLV----TGK-----TALVVSPLISLMQDQVMSLK 74 (374)
Q Consensus 8 ~~~~~~~~~~Q~~~~~~----~~~~~~~l~~a~tGsGKT~~~~l~~~~----~~~-----~~lil~P~~~l~~q~~~~~~ 74 (374)
.|+|. ++|.|.+.+.. +.+++++++.||||+|||++++.+++. ... +++|+++|..+..|...+++
T Consensus 4 ~FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00488 4 YFPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred cCCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 37886 69999995554 446889999999999999999988752 222 89999999999999888887
Q ss_pred Hc
Q 037567 75 QR 76 (374)
Q Consensus 75 ~~ 76 (374)
+.
T Consensus 83 ~~ 84 (289)
T smart00488 83 KL 84 (289)
T ss_pred hc
Confidence 65
No 179
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.62 E-value=6.9e-08 Score=83.20 Aligned_cols=68 Identities=21% Similarity=0.327 Sum_probs=55.5
Q ss_pred HcCCCCCchhHHHHHHH----HHcCCCEEEEccCCCCchhhhhccccc----cCC-----cEEEEcchHHHHHHHHHHHH
Q 037567 8 YFGYSVFRPYQKDVIQR----IIEKRDCLVVMATGSGKSLCYQLPPLV----TGK-----TALVVSPLISLMQDQVMSLK 74 (374)
Q Consensus 8 ~~~~~~~~~~Q~~~~~~----~~~~~~~l~~a~tGsGKT~~~~l~~~~----~~~-----~~lil~P~~~l~~q~~~~~~ 74 (374)
.|+|. ++|.|.+.+.. +.+++++++.||||+|||++++.+++. ... +++|+++|..+..|...+++
T Consensus 4 ~FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00489 4 YFPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred cCCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 37886 69999995554 446889999999999999999988752 222 89999999999999888887
Q ss_pred Hc
Q 037567 75 QR 76 (374)
Q Consensus 75 ~~ 76 (374)
+.
T Consensus 83 ~~ 84 (289)
T smart00489 83 KL 84 (289)
T ss_pred hc
Confidence 65
No 180
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.51 E-value=1.5e-07 Score=89.15 Aligned_cols=103 Identities=18% Similarity=0.140 Sum_probs=90.7
Q ss_pred CcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCC-ee-EEEEeccccccccccCccEEEEECCC
Q 037567 229 GSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDE-IR-VMVATMAFGMGIDKPDVRHVIHYGCP 306 (374)
Q Consensus 229 ~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~-ilv~t~~~~~G~d~~~~~~vi~~~~p 306 (374)
.+++||+.-...+..+.-.+...++....+.|.++...|.+.+..|..+. .. .+++..+.+.|+|+..+.+|+..++=
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 48999999999999999888888888889999999999999999999654 23 44577789999999999999999999
Q ss_pred CChhHHHHhhccCCCCCCceEEEEE
Q 037567 307 KTLESYYQESGRCGRDGIASVCWLY 331 (374)
Q Consensus 307 ~s~~~~~Q~~GR~~R~~~~g~~~~~ 331 (374)
+++....|.+-|+.|.|+...+.+.
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v~ 644 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKVS 644 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeeee
Confidence 9999999999999999998776653
No 181
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.47 E-value=6.3e-07 Score=72.75 Aligned_cols=59 Identities=14% Similarity=0.208 Sum_probs=43.0
Q ss_pred CchhHHHHHHHHHcCC--CEEEEccCCCCchhhhhcc---ccccCCcEEEEcchHHHHHHHHHH
Q 037567 14 FRPYQKDVIQRIIEKR--DCLVVMATGSGKSLCYQLP---PLVTGKTALVVSPLISLMQDQVMS 72 (374)
Q Consensus 14 ~~~~Q~~~~~~~~~~~--~~l~~a~tGsGKT~~~~l~---~~~~~~~~lil~P~~~l~~q~~~~ 72 (374)
|++-|.+++..++.++ -.++.|++|+|||.+.... +...+.++++++||...+....+.
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHh
Confidence 6789999999997644 4678899999999753221 123578999999999998886666
No 182
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.37 E-value=1.2e-06 Score=79.56 Aligned_cols=62 Identities=19% Similarity=0.185 Sum_probs=50.2
Q ss_pred CCchhHHHHHHHHHcCC-CEEEEccCCCCchhhhhcc---ccccCCcEEEEcchHHHHHHHHHHHH
Q 037567 13 VFRPYQKDVIQRIIEKR-DCLVVMATGSGKSLCYQLP---PLVTGKTALVVSPLISLMQDQVMSLK 74 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~~-~~l~~a~tGsGKT~~~~l~---~~~~~~~~lil~P~~~l~~q~~~~~~ 74 (374)
.+.+-|.+|+......+ -.+++||||+|||.+.... ++.++.++|+++||...++...+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 57788999998888774 5688999999999764333 33478999999999999999888754
No 183
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.28 E-value=5.1e-06 Score=79.48 Aligned_cols=72 Identities=18% Similarity=0.161 Sum_probs=56.7
Q ss_pred CCchhHHHHHHHHHcC-CCEEEEccCCCCchhhhhc---cccccCCcEEEEcchHHHHHHHHHHHHHcCCceEEcC
Q 037567 13 VFRPYQKDVIQRIIEK-RDCLVVMATGSGKSLCYQL---PPLVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLG 84 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~-~~~l~~a~tGsGKT~~~~l---~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 84 (374)
.+.+.|.+|+..++.. ...++.||+|+|||.+... .++..+.++++++||...++++.+.+...+..+..++
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~~~~vvRlg 232 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALCDQKIVRLG 232 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhCCCcEEEeC
Confidence 5788999999998876 6678999999999965432 2334678999999999999999999987655544443
No 184
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.26 E-value=2.4e-06 Score=68.86 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=36.2
Q ss_pred CCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc-----cCCcEEEEcchHHH
Q 037567 11 YSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV-----TGKTALVVSPLISL 65 (374)
Q Consensus 11 ~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~-----~~~~~lil~P~~~l 65 (374)
+...++.|..++.++...+-+++.||.|||||+.++..+++ ...+++++-|..+.
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEA 61 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCC
Confidence 45678899999999998888899999999999876655543 34678888887643
No 185
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.20 E-value=1.8e-05 Score=74.08 Aligned_cols=159 Identities=16% Similarity=0.080 Sum_probs=94.5
Q ss_pred CCCchhHHHHHHHHHcCC----------CEEEEccCCCCchhhhhccccc----cCCcEEEEcchHHHHHHHHHHHHHcC
Q 037567 12 SVFRPYQKDVIQRIIEKR----------DCLVVMATGSGKSLCYQLPPLV----TGKTALVVSPLISLMQDQVMSLKQRG 77 (374)
Q Consensus 12 ~~~~~~Q~~~~~~~~~~~----------~~l~~a~tGsGKT~~~~l~~~~----~~~~~lil~P~~~l~~q~~~~~~~~~ 77 (374)
..+...|.+++-...+.+ .+++-...|.||-.+..-.++. -.+++|++.-+.+|--+..+++...|
T Consensus 263 g~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRKrAlW~SVSsDLKfDAERDL~Dig 342 (1300)
T KOG1513|consen 263 GHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRKRALWFSVSSDLKFDAERDLRDIG 342 (1300)
T ss_pred cchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccceeEEEEeccccccchhhchhhcC
Confidence 357889999987766532 3456555777777554444443 37889999999999999889998775
Q ss_pred CceEEcCC-CCCchhhhhh--hhcCCeeEEEEcCcccccCchh----h---HH---HHHhcCc-cEEEEeccchhhcc--
Q 037567 78 INAEFLGS-AQTDSSVQTK--AETGYFQLLFMTPEKACIIPIS----F---WS---KLLKAGV-CLFAVDEAHCISEW-- 141 (374)
Q Consensus 78 ~~~~~~~~-~~~~~~~~~~--~~~~~~~i~i~T~~~l~~~~~~----~---~~---~~~~~~~-~~vviDE~h~~~~~-- 141 (374)
..--.++. .+.+...... ...-.-.++++|+-.|..-.+. + .. .+....+ .+||+||||.-.+-
T Consensus 343 A~~I~V~alnK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAKNL~p 422 (1300)
T KOG1513|consen 343 ATGIAVHALNKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAKNLVP 422 (1300)
T ss_pred CCCccceehhhcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhhccccc
Confidence 43322211 1111110000 1111236999999876443221 0 11 1112223 48999999986541
Q ss_pred --cCcchHHHHHHHHHHHhcCCCCeeEEEee
Q 037567 142 --GHDFRLEYKQLDKLRTFLLGVPFVALTAT 170 (374)
Q Consensus 142 --~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 170 (374)
+......-..+..+...+|+.++|+-|||
T Consensus 423 ~~~~k~TKtG~tVLdLQk~LP~ARVVYASAT 453 (1300)
T KOG1513|consen 423 TAGAKSTKTGKTVLDLQKKLPNARVVYASAT 453 (1300)
T ss_pred ccCCCcCcccHhHHHHHHhCCCceEEEeecc
Confidence 11111111456777888899999999999
No 186
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=98.20 E-value=2.6e-05 Score=59.35 Aligned_cols=94 Identities=20% Similarity=0.216 Sum_probs=63.2
Q ss_pred HHHHHHHHHHcCC------ceeeeecCCChHHHHHHHHhhhcCC-eeEEEEeccccccccccC--ccEEEEECCCC----
Q 037567 241 VEEISKALKQLGV------KAGTYHGQMGSKAREEAHRLFIRDE-IRVMVATMAFGMGIDKPD--VRHVIHYGCPK---- 307 (374)
Q Consensus 241 ~~~l~~~l~~~~~------~~~~~~~~~~~~~r~~~~~~f~~g~-~~ilv~t~~~~~G~d~~~--~~~vi~~~~p~---- 307 (374)
.+.+.+.+++.+. .-.++..+.+..+...+++.|.... ..||+++..+++|+|+|+ ++.||..+.|.
T Consensus 4 m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~ 83 (141)
T smart00492 4 MESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPD 83 (141)
T ss_pred HHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCC
Confidence 4455555555432 1223333445556788888898754 379999988999999998 56788887663
Q ss_pred ---------------------------ChhHHHHhhccCCCCCCceEEEEEeec
Q 037567 308 ---------------------------TLESYYQESGRCGRDGIASVCWLYYAR 334 (374)
Q Consensus 308 ---------------------------s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 334 (374)
....+.|.+||+-|..++-.+++++++
T Consensus 84 d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D~ 137 (141)
T smart00492 84 SPILKARLELLRDKGQIRPFDFVSLPDAMRTLAQCVGRLIRGANDYGVVVIADK 137 (141)
T ss_pred CHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCccccCcCceEEEEEEec
Confidence 124558889999998765555555554
No 187
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=98.20 E-value=2.3e-05 Score=59.69 Aligned_cols=95 Identities=22% Similarity=0.238 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHcCC---ceeeeecCCChHHHHHHHHhhhcCCe---eEEEEecc--ccccccccC--ccEEEEECCCC--
Q 037567 240 DVEEISKALKQLGV---KAGTYHGQMGSKAREEAHRLFIRDEI---RVMVATMA--FGMGIDKPD--VRHVIHYGCPK-- 307 (374)
Q Consensus 240 ~~~~l~~~l~~~~~---~~~~~~~~~~~~~r~~~~~~f~~g~~---~ilv~t~~--~~~G~d~~~--~~~vi~~~~p~-- 307 (374)
..+.+++.+++.+. ..-.+..+....+...+++.|.+..- .||+++.. .++|+|+|+ ++.||..+.|.
T Consensus 3 ~m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~ 82 (142)
T smart00491 3 YLEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPN 82 (142)
T ss_pred HHHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCC
Confidence 34556666665432 12223323333455778888887543 68888876 999999999 67888888773
Q ss_pred -----------------------------ChhHHHHhhccCCCCCCceEEEEEeec
Q 037567 308 -----------------------------TLESYYQESGRCGRDGIASVCWLYYAR 334 (374)
Q Consensus 308 -----------------------------s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 334 (374)
......|.+||+-|..++-.++++++.
T Consensus 83 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 83 PDSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEec
Confidence 123457899999998776656666654
No 188
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.18 E-value=7.3e-06 Score=74.32 Aligned_cols=142 Identities=16% Similarity=0.112 Sum_probs=71.6
Q ss_pred EEccCCCCchhhhhccccc---cC-CcEEEEcchHHHHHHHHHHHHH-----cCCceEEc-CCCCCc-hhhh-hhhhcCC
Q 037567 33 VVMATGSGKSLCYQLPPLV---TG-KTALVVSPLISLMQDQVMSLKQ-----RGINAEFL-GSAQTD-SSVQ-TKAETGY 100 (374)
Q Consensus 33 ~~a~tGsGKT~~~~l~~~~---~~-~~~lil~P~~~l~~q~~~~~~~-----~~~~~~~~-~~~~~~-~~~~-~~~~~~~ 100 (374)
..++||||||++++..+++ ++ ...|+.|.....++.....+.. +-..-.+. .+.... .... ...-...
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehnd~ 81 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHNDA 81 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccCCc
Confidence 5689999999887666664 33 4578888887777765554432 10000000 000000 0000 0112345
Q ss_pred eeEEEEcCcccccCchhhHH-HH---HhcCccE-EEEeccchhhccc----C----cchHHHHHHHHHHHhcCCCCeeEE
Q 037567 101 FQLLFMTPEKACIIPISFWS-KL---LKAGVCL-FAVDEAHCISEWG----H----DFRLEYKQLDKLRTFLLGVPFVAL 167 (374)
Q Consensus 101 ~~i~i~T~~~l~~~~~~~~~-~~---~~~~~~~-vviDE~h~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~i~~ 167 (374)
..|.++|.+.|....-+-.. .+ .+....+ ++-||+||+.... . ..+.+-+.+.-..+.-++.-++.+
T Consensus 82 iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~lef 161 (812)
T COG3421 82 IEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLLLEF 161 (812)
T ss_pred eEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCceeehh
Confidence 68999999877544322111 11 2223333 4559999996311 0 111111222222233345567889
Q ss_pred EeecCcc
Q 037567 168 TATATEK 174 (374)
Q Consensus 168 SaT~~~~ 174 (374)
|||.+.+
T Consensus 162 ~at~~k~ 168 (812)
T COG3421 162 SATIPKE 168 (812)
T ss_pred hhcCCcc
Confidence 9998843
No 189
>PF13245 AAA_19: Part of AAA domain
Probab=98.08 E-value=5.5e-06 Score=55.54 Aligned_cols=46 Identities=24% Similarity=0.274 Sum_probs=34.3
Q ss_pred CCCEEEEccCCCCchhhhhcc---cccc----CCcEEEEcchHHHHHHHHHHH
Q 037567 28 KRDCLVVMATGSGKSLCYQLP---PLVT----GKTALVVSPLISLMQDQVMSL 73 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~---~~~~----~~~~lil~P~~~l~~q~~~~~ 73 (374)
+.-+++.||+|||||.+.+-. .... +.++++++|++..+++..+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 444566999999999543322 1112 678999999999999988887
No 190
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.05 E-value=2.5e-05 Score=73.81 Aligned_cols=61 Identities=20% Similarity=0.222 Sum_probs=47.1
Q ss_pred chhHHHHHHHHHcCCCEEEEccCCCCchhhh--hccccc---c---CCcEEEEcchHHHHHHHHHHHHH
Q 037567 15 RPYQKDVIQRIIEKRDCLVVMATGSGKSLCY--QLPPLV---T---GKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 15 ~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~--~l~~~~---~---~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
.++|..++..++.++-+++.|++|+|||.+. ++..+. + ..++++++||..-+..+.+.+..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHh
Confidence 3789999999999999999999999999653 222221 1 25799999999888877776654
No 191
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.99 E-value=7.6e-06 Score=73.10 Aligned_cols=47 Identities=19% Similarity=0.157 Sum_probs=36.5
Q ss_pred CEEEEccCCCCchhhhhccc-----cccCCcEEEEcchHHHHHHHHHHHHHc
Q 037567 30 DCLVVMATGSGKSLCYQLPP-----LVTGKTALVVSPLISLMQDQVMSLKQR 76 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~l~~-----~~~~~~~lil~P~~~l~~q~~~~~~~~ 76 (374)
-++|.|.+|||||+.++-.+ ...+.+++++++...|.......+...
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~ 54 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKK 54 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhh
Confidence 46889999999997654222 235788999999999999888887654
No 192
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=97.96 E-value=5.2e-05 Score=67.82 Aligned_cols=68 Identities=21% Similarity=0.387 Sum_probs=43.6
Q ss_pred HhHcCCCCCchhHHHHHHHHH----cCCCEEEEccCCCCchhhhhccccc-------cCCcEEEEcchHHHHHHHHHHH
Q 037567 6 KKYFGYSVFRPYQKDVIQRII----EKRDCLVVMATGSGKSLCYQLPPLV-------TGKTALVVSPLISLMQDQVMSL 73 (374)
Q Consensus 6 ~~~~~~~~~~~~Q~~~~~~~~----~~~~~l~~a~tGsGKT~~~~l~~~~-------~~~~~lil~P~~~l~~q~~~~~ 73 (374)
.-.|+|+..+|-|-+-.-.+. .+.++++.+|+|+|||.+.+-.+.. ...+.++...|..-++....++
T Consensus 9 ~v~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El 87 (755)
T KOG1131|consen 9 LVYFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEEL 87 (755)
T ss_pred eEecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHH
Confidence 345889999998877665544 3678999999999999764322221 2345666655554444444444
No 193
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.93 E-value=3.8e-05 Score=66.89 Aligned_cols=104 Identities=18% Similarity=0.195 Sum_probs=64.0
Q ss_pred HHHHHHcC---CCEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhhhhhhh
Q 037567 21 VIQRIIEK---RDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE 97 (374)
Q Consensus 21 ~~~~~~~~---~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (374)
.+..+.++ .+.|++||+|+|||..+.+.+-..+..+.-+..+.+-+.++..-+.+.
T Consensus 38 ~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a--------------------- 96 (436)
T COG2256 38 PLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEA--------------------- 96 (436)
T ss_pred hHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHHH---------------------
Confidence 33444443 367999999999998766655555666666666655555444443321
Q ss_pred cCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCeeEEEeecCccc
Q 037567 98 TGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175 (374)
Q Consensus 98 ~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~ 175 (374)
. .......=.++++||+|++.. .+...++....+..+++.-||-.++.
T Consensus 97 -------------------~--~~~~~gr~tiLflDEIHRfnK---------~QQD~lLp~vE~G~iilIGATTENPs 144 (436)
T COG2256 97 -------------------R--KNRLLGRRTILFLDEIHRFNK---------AQQDALLPHVENGTIILIGATTENPS 144 (436)
T ss_pred -------------------H--HHHhcCCceEEEEehhhhcCh---------hhhhhhhhhhcCCeEEEEeccCCCCC
Confidence 0 000001114799999999865 33345555666788999999865553
No 194
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.89 E-value=4.3e-05 Score=57.78 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=12.3
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
++.+++.|++|+|||...
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 456789999999999664
No 195
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.89 E-value=4.1e-05 Score=72.55 Aligned_cols=72 Identities=21% Similarity=0.212 Sum_probs=52.1
Q ss_pred HHHhHcCCCC-CchhHHHHHHHHHcCCCEEEEccCCCCchhhh--hccccc-----cCCcEEEEcchHHHHHHHHHHHHH
Q 037567 4 TLKKYFGYSV-FRPYQKDVIQRIIEKRDCLVVMATGSGKSLCY--QLPPLV-----TGKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 4 ~l~~~~~~~~-~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~--~l~~~~-----~~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
.|...|+... ..++|..|+...+.++-.++.|++|+|||.+. ++..+. ...++++++||..-+..+.+.+..
T Consensus 142 ~l~~lf~~~~~~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 142 TLDALFGPVTDEVDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred HHHHhcCcCCCCCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHh
Confidence 3445554432 35799999999989889999999999999653 222221 134789999999988887776653
No 196
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.88 E-value=6.3e-05 Score=72.16 Aligned_cols=123 Identities=20% Similarity=0.165 Sum_probs=86.3
Q ss_pred CCCCchhHHHHHHHHHcCCCE-EEEccCCCCchhhhhcc---ccccCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCC
Q 037567 11 YSVFRPYQKDVIQRIIEKRDC-LVVMATGSGKSLCYQLP---PLVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSA 86 (374)
Q Consensus 11 ~~~~~~~Q~~~~~~~~~~~~~-l~~a~tGsGKT~~~~l~---~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 86 (374)
+..+..-|.+|+..++..++. ++.|=||+|||.+.... ++..+++||+.+-|...++.....++.+++..-.++..
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~~ 746 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGFGIYILRLGSE 746 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhccCcceeecCCc
Confidence 446888999999988887665 77888999999664332 23468999999999999999999999988876555543
Q ss_pred CCchhhhh----------------hhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhh
Q 037567 87 QTDSSVQT----------------KAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCIS 139 (374)
Q Consensus 87 ~~~~~~~~----------------~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~ 139 (374)
........ ....+.+.|+.+|---+.. .-+....|++.|||||-.+.
T Consensus 747 ~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~------plf~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 747 EKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINH------PLFVNRQFDYCIIDEASQIL 809 (1100)
T ss_pred cccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCc------hhhhccccCEEEEccccccc
Confidence 32222111 1123456788777544432 23334669999999998875
No 197
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.85 E-value=8.8e-05 Score=72.27 Aligned_cols=62 Identities=13% Similarity=0.097 Sum_probs=47.3
Q ss_pred cCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhh--hccccc-cC--CcEEEEcchHHHHHHHHH
Q 037567 9 FGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCY--QLPPLV-TG--KTALVVSPLISLMQDQVM 71 (374)
Q Consensus 9 ~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~--~l~~~~-~~--~~~lil~P~~~l~~q~~~ 71 (374)
.++ .+++-|.+|+..+..++-+++.|++|+|||.+. ++.++. .+ ..+++++||...+..+.+
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred cCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHH
Confidence 454 589999999999998888999999999999653 222232 23 678999999887775544
No 198
>PRK10536 hypothetical protein; Provisional
Probab=97.72 E-value=0.00015 Score=60.25 Aligned_cols=54 Identities=15% Similarity=0.123 Sum_probs=38.6
Q ss_pred CCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcccc----cc-CCcEEEEcchH
Q 037567 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL----VT-GKTALVVSPLI 63 (374)
Q Consensus 10 ~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~----~~-~~~~lil~P~~ 63 (374)
++...+..|...+..+.++..+++.||+|+|||+.+...++ .. ..++++.-|..
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v 114 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVL 114 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCC
Confidence 44566779999999998888889999999999976543332 22 34456665554
No 199
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.60 E-value=0.00014 Score=62.64 Aligned_cols=61 Identities=15% Similarity=0.194 Sum_probs=46.8
Q ss_pred HhHcCCCCCchhHHHHHHHHHcCC--CEEEEccCCCCchhhhhccccc------cCCcEEEEcchHHHH
Q 037567 6 KKYFGYSVFRPYQKDVIQRIIEKR--DCLVVMATGSGKSLCYQLPPLV------TGKTALVVSPLISLM 66 (374)
Q Consensus 6 ~~~~~~~~~~~~Q~~~~~~~~~~~--~~l~~a~tGsGKT~~~~l~~~~------~~~~~lil~P~~~l~ 66 (374)
++++|+......|.-|+..++... =+.+.++.|||||+.++.+.+. ...++++.=|+..+.
T Consensus 221 ~~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG 289 (436)
T COG1875 221 QEVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVG 289 (436)
T ss_pred hhhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcc
Confidence 477899888889999998888643 4567899999999887777665 256777777765544
No 200
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.53 E-value=6.8e-05 Score=73.87 Aligned_cols=138 Identities=11% Similarity=0.046 Sum_probs=84.7
Q ss_pred CCCEEEEccCCCCchhhhhccccc---------------------cCCcEEEEcchHHHHHHHHHHHHHc---CCceEEc
Q 037567 28 KRDCLVVMATGSGKSLCYQLPPLV---------------------TGKTALVVSPLISLMQDQVMSLKQR---GINAEFL 83 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~~~---------------------~~~~~lil~P~~~l~~q~~~~~~~~---~~~~~~~ 83 (374)
|+++++.-..|.|||...+...+. ..+.+||++|. ++..||..++... ++.+..+
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~lKv~~Y 452 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSLLKVLLY 452 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccccceEEEE
Confidence 456677777999999664433221 14568999999 7999999999864 3344433
Q ss_pred CCCCCchhhhhhhhcCCeeEEEEcCcccccCchhh-----HHHHHh-------------cCccEEEEeccchhhcccCcc
Q 037567 84 GSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISF-----WSKLLK-------------AGVCLFAVDEAHCISEWGHDF 145 (374)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~-----~~~~~~-------------~~~~~vviDE~h~~~~~~~~~ 145 (374)
.|.-..... ......++||++|||+.|..-+... .....+ -.|=-|++|||+.+...+
T Consensus 453 ~Girk~~~~-~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesss--- 528 (1394)
T KOG0298|consen 453 FGIRKTFWL-SPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSS--- 528 (1394)
T ss_pred echhhhccc-CchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchH---
Confidence 332111111 1123356899999998764322111 001111 011138999999886522
Q ss_pred hHHHHHHHHHHHhcCCCCeeEEEeecCcc
Q 037567 146 RLEYKQLDKLRTFLLGVPFVALTATATEK 174 (374)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~i~~SaT~~~~ 174 (374)
++..+....++....=++||||-..
T Consensus 529 ----S~~a~M~~rL~~in~W~VTGTPiq~ 553 (1394)
T KOG0298|consen 529 ----SAAAEMVRRLHAINRWCVTGTPIQK 553 (1394)
T ss_pred ----HHHHHHHHHhhhhceeeecCCchhh
Confidence 4556666667778889999998776
No 201
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.52 E-value=7.4e-05 Score=70.54 Aligned_cols=65 Identities=18% Similarity=0.305 Sum_probs=52.9
Q ss_pred cCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhc-C--CeeEEEEecccccc
Q 037567 226 AGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIR-D--EIRVMVATMAFGMG 291 (374)
Q Consensus 226 ~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g--~~~ilv~t~~~~~G 291 (374)
..+.+++||..-....+-+...+...+ ....+.|..+..+|+..+..|+. | ..-.|.+|.+.+.|
T Consensus 629 ~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 629 SSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred hcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 456789999988888888888887777 77889999999999999999994 2 35567788877655
No 202
>PRK08181 transposase; Validated
Probab=97.49 E-value=0.00097 Score=56.70 Aligned_cols=56 Identities=20% Similarity=0.135 Sum_probs=34.2
Q ss_pred CchhHHHHHHH----HHcCCCEEEEccCCCCchhhhhcc---ccccCCcEEEEcchHHHHHHHH
Q 037567 14 FRPYQKDVIQR----IIEKRDCLVVMATGSGKSLCYQLP---PLVTGKTALVVSPLISLMQDQV 70 (374)
Q Consensus 14 ~~~~Q~~~~~~----~~~~~~~l~~a~tGsGKT~~~~l~---~~~~~~~~lil~P~~~l~~q~~ 70 (374)
+.+.|..++.. +-++.++++.||+|+|||..+... +..++.+++++ +..+|..+..
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~-~~~~L~~~l~ 150 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFT-RTTDLVQKLQ 150 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeee-eHHHHHHHHH
Confidence 34556655532 335788999999999999443221 23456666554 4456666554
No 203
>PRK06526 transposase; Provisional
Probab=97.48 E-value=0.00048 Score=58.17 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=26.1
Q ss_pred cCCCEEEEccCCCCchhhhhc---cccccCCcEEEEcchHHHHHH
Q 037567 27 EKRDCLVVMATGSGKSLCYQL---PPLVTGKTALVVSPLISLMQD 68 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~~l---~~~~~~~~~lil~P~~~l~~q 68 (374)
.+.++++.||+|+|||..+.. .+...+.++++.... ++.++
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~-~l~~~ 140 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAA-QWVAR 140 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHH-HHHHH
Confidence 467899999999999955432 223456666664333 44444
No 204
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.47 E-value=0.00039 Score=58.68 Aligned_cols=60 Identities=23% Similarity=0.212 Sum_probs=51.2
Q ss_pred HHHHhhhcCCeeEEEEeccccccccccC--------ccEEEEECCCCChhHHHHhhccCCCCCCceEE
Q 037567 269 EAHRLFIRDEIRVMVATMAFGMGIDKPD--------VRHVIHYGCPKTLESYYQESGRCGRDGIASVC 328 (374)
Q Consensus 269 ~~~~~f~~g~~~ilv~t~~~~~G~d~~~--------~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~ 328 (374)
...+.|.+|+.+|+|.+.+.++|+.+.. -++-|.+.+|||+...+|..||+.|.||....
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P 119 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAP 119 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCC
Confidence 4566799999999999999999998863 34677899999999999999999999985433
No 205
>PRK04296 thymidine kinase; Provisional
Probab=97.46 E-value=7.5e-05 Score=60.37 Aligned_cols=32 Identities=28% Similarity=0.213 Sum_probs=22.0
Q ss_pred CEEEEccCCCCchhhhhcccc---ccCCcEEEEcc
Q 037567 30 DCLVVMATGSGKSLCYQLPPL---VTGKTALVVSP 61 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~l~~~---~~~~~~lil~P 61 (374)
-.++.||+|+|||...+-.+. ..+.+++++-|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 357899999999965432222 34778888866
No 206
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.46 E-value=0.00028 Score=57.56 Aligned_cols=62 Identities=21% Similarity=0.431 Sum_probs=47.2
Q ss_pred CCchhHHHHHHHHHc---CCCEEEEccCCCCchhhhh---ccccccC-CcEEEEcchHHHHHHHHHHHHH
Q 037567 13 VFRPYQKDVIQRIIE---KRDCLVVMATGSGKSLCYQ---LPPLVTG-KTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~---~~~~l~~a~tGsGKT~~~~---l~~~~~~-~~~lil~P~~~l~~q~~~~~~~ 75 (374)
-+|+-|.+....+.+ +++.+...-+|.|||.+.+ ..++..+ .-+-+++|. +|..|....+..
T Consensus 23 liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVpk-~Ll~q~~~~L~~ 91 (229)
T PF12340_consen 23 LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVPK-ALLEQMRQMLRS 91 (229)
T ss_pred eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcCH-HHHHHHHHHHHH
Confidence 489999999999986 4788999999999996532 2223343 446677777 799998888875
No 207
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.45 E-value=0.0019 Score=52.28 Aligned_cols=126 Identities=19% Similarity=0.126 Sum_probs=66.0
Q ss_pred EEEEccCCCCchhhhhcccc---ccCCcEEEEc-c--hHHHHHHHHHHHHHcCCceEEcCCCCCchhhhhhhhcCCeeEE
Q 037567 31 CLVVMATGSGKSLCYQLPPL---VTGKTALVVS-P--LISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLL 104 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~~l~~~---~~~~~~lil~-P--~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 104 (374)
++++||||+|||.+..-.+. .++.++.+++ . +..-.+|.....+..+..............
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~------------- 70 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAE------------- 70 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHH-------------
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHH-------------
Confidence 57899999999976442221 1255554444 3 224556666666666655443221111111
Q ss_pred EEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhc-CCCCeeEEEeecCcccHHHHHHh
Q 037567 105 FMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFL-LGVPFVALTATATEKVRIDIINS 182 (374)
Q Consensus 105 i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~SaT~~~~~~~~~~~~ 182 (374)
............++++|+||-+.+... .......+..+.... +....+.+|||........+...
T Consensus 71 ---------~~~~~l~~~~~~~~D~vlIDT~Gr~~~----d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~ 136 (196)
T PF00448_consen 71 ---------IAREALEKFRKKGYDLVLIDTAGRSPR----DEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF 136 (196)
T ss_dssp ---------HHHHHHHHHHHTTSSEEEEEE-SSSST----HHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH
T ss_pred ---------HHHHHHHHHhhcCCCEEEEecCCcchh----hHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH
Confidence 111222334446788999999875421 122224444444444 34567889999887765544443
No 208
>PRK08727 hypothetical protein; Validated
Probab=97.45 E-value=0.00054 Score=57.39 Aligned_cols=32 Identities=13% Similarity=0.116 Sum_probs=20.1
Q ss_pred CCEEEEccCCCCchhhhhc---cccccCCcEEEEc
Q 037567 29 RDCLVVMATGSGKSLCYQL---PPLVTGKTALVVS 60 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l---~~~~~~~~~lil~ 60 (374)
..+++.||+|+|||-.... .+..++.+++++.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3479999999999943221 1233455666654
No 209
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.43 E-value=0.0011 Score=50.94 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=22.5
Q ss_pred CCCEEEEccCCCCchhhhhcccc---ccCCcEEEEcch
Q 037567 28 KRDCLVVMATGSGKSLCYQLPPL---VTGKTALVVSPL 62 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~~---~~~~~~lil~P~ 62 (374)
++.+++.||+|+|||......+. ..+..++++...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~ 56 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNAS 56 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehh
Confidence 56789999999999965432222 224556555544
No 210
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0022 Score=53.85 Aligned_cols=117 Identities=11% Similarity=0.093 Sum_probs=70.7
Q ss_pred HHHHcCC-----CEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhhhhhhh
Q 037567 23 QRIIEKR-----DCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE 97 (374)
Q Consensus 23 ~~~~~~~-----~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (374)
|+++.|+ .+++.+|+|+||++.+-..+-. ....++-+.+..|+..|.-+-.++
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE-AnSTFFSvSSSDLvSKWmGESEkL--------------------- 213 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE-ANSTFFSVSSSDLVSKWMGESEKL--------------------- 213 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhh-cCCceEEeehHHHHHHHhccHHHH---------------------
Confidence 5556654 4799999999999764333333 346788888889999887664433
Q ss_pred cCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHH-HHHHH-HHHHhcC-----CCCeeEEEee
Q 037567 98 TGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLE-YKQLD-KLRTFLL-----GVPFVALTAT 170 (374)
Q Consensus 98 ~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~-~~~~~-~~~~~~~-----~~~~i~~SaT 170 (374)
....+....-...++|+|||++.+.....+.... .+++. +++-.+. +..++.+.||
T Consensus 214 -----------------VknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgAT 276 (439)
T KOG0739|consen 214 -----------------VKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGAT 276 (439)
T ss_pred -----------------HHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecC
Confidence 0122233334566789999999886533322222 12332 2222222 3568889999
Q ss_pred cCcccHHH
Q 037567 171 ATEKVRID 178 (374)
Q Consensus 171 ~~~~~~~~ 178 (374)
-.+.....
T Consensus 277 NiPw~LDs 284 (439)
T KOG0739|consen 277 NIPWVLDS 284 (439)
T ss_pred CCchhHHH
Confidence 77765543
No 211
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.39 E-value=0.00018 Score=63.41 Aligned_cols=61 Identities=21% Similarity=0.215 Sum_probs=45.7
Q ss_pred CchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccc---c----ccCCcEEEEcchHHHHHHHHHHHHHc
Q 037567 14 FRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPP---L----VTGKTALVVSPLISLMQDQVMSLKQR 76 (374)
Q Consensus 14 ~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~---~----~~~~~~lil~P~~~l~~q~~~~~~~~ 76 (374)
+++-|.+++.. ..++++|.|++|||||.+.+.-+ + ....+++++++|+..+.++...+...
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~ 68 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIREL 68 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHh
Confidence 46778888877 67889999999999997654222 1 13567999999999999998888763
No 212
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.36 E-value=0.00089 Score=57.78 Aligned_cols=47 Identities=15% Similarity=0.087 Sum_probs=29.4
Q ss_pred CCEEEEccCCCCchhhhhcccccc---CCcEEEEcchHHHHHHHHHHHHH
Q 037567 29 RDCLVVMATGSGKSLCYQLPPLVT---GKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~~~~~---~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
...++++|+|+|||..+-+.+-.. ..+.+=+..+.+-.+++..-+++
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHH
Confidence 367999999999997654444332 23355555565556655555443
No 213
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.35 E-value=0.00053 Score=67.21 Aligned_cols=58 Identities=14% Similarity=0.115 Sum_probs=44.4
Q ss_pred CCchhHHHHHHHHHcC-CCEEEEccCCCCchhhhhc--ccc-ccCCcEEEEcchHHHHHHHH
Q 037567 13 VFRPYQKDVIQRIIEK-RDCLVVMATGSGKSLCYQL--PPL-VTGKTALVVSPLISLMQDQV 70 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~-~~~l~~a~tGsGKT~~~~l--~~~-~~~~~~lil~P~~~l~~q~~ 70 (374)
.+++-|.+|+..++.+ +-+++.|++|+|||.+.-. .++ ..+.++++++||...+..+.
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHH
Confidence 5899999999999874 5668999999999965322 122 24788999999987776554
No 214
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=97.31 E-value=0.0024 Score=60.01 Aligned_cols=157 Identities=16% Similarity=0.226 Sum_probs=93.2
Q ss_pred hHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhh--cc-cc--ccCCcEEEEcchHHHHHHHHHHHHHcC
Q 037567 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQ--LP-PL--VTGKTALVVSPLISLMQDQVMSLKQRG 77 (374)
Q Consensus 3 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~--l~-~~--~~~~~~lil~P~~~l~~q~~~~~~~~~ 77 (374)
..|+..|+...+.. .+ -..++.+-.++..|=-.|||-... +. ++ ..+.++++.+|.+..++.+++++...-
T Consensus 233 ~~lk~~Fdi~~~s~---~~-~~~fkqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~l 308 (738)
T PHA03368 233 RFLRTVFNTPLFSD---AA-VRHFRQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARL 308 (738)
T ss_pred HHHHHHcCCccccH---HH-HHHhhccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHH
Confidence 56777777765544 23 344566777888899999995322 22 11 358899999999999999998887641
Q ss_pred C----c--eEEcCCCCCchhhhhhhhcCC-eeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHH
Q 037567 78 I----N--AEFLGSAQTDSSVQTKAETGY-FQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYK 150 (374)
Q Consensus 78 ~----~--~~~~~~~~~~~~~~~~~~~~~-~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~ 150 (374)
. . +....+ .........+. ..|.+.+. +..+....+.++++|+|||+.+.. .
T Consensus 309 e~~f~~~~v~~vkG----e~I~i~f~nG~kstI~FaSa--------rntNsiRGqtfDLLIVDEAqFIk~---------~ 367 (738)
T PHA03368 309 RQWFGASRVDHVKG----ETISFSFPDGSRSTIVFASS--------HNTNGIRGQDFNLLFVDEANFIRP---------D 367 (738)
T ss_pred hhhcchhheeeecC----cEEEEEecCCCccEEEEEec--------cCCCCccCCcccEEEEechhhCCH---------H
Confidence 1 1 111110 00000001111 13333321 111234456789999999999876 2
Q ss_pred HHHHHHHhc--CCCCeeEEEeecCcccHHHHHHhcC
Q 037567 151 QLDKLRTFL--LGVPFVALTATATEKVRIDIINSLK 184 (374)
Q Consensus 151 ~~~~~~~~~--~~~~~i~~SaT~~~~~~~~~~~~~~ 184 (374)
.+..+...+ .+.++|++|.|-+......++..++
T Consensus 368 al~~ilp~l~~~n~k~I~ISS~Ns~~~sTSFL~nLk 403 (738)
T PHA03368 368 AVQTIMGFLNQTNCKIIFVSSTNTGKASTSFLYNLK 403 (738)
T ss_pred HHHHHHHHHhccCccEEEEecCCCCccchHHHHhhc
Confidence 223332222 2789999999988877766666664
No 215
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.28 E-value=0.00017 Score=58.41 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=16.2
Q ss_pred CEEEEccCCCCchhhhhcccc
Q 037567 30 DCLVVMATGSGKSLCYQLPPL 50 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~l~~~ 50 (374)
+++++||+|+|||..+.+.+-
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~ 72 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIAN 72 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEECCCccchhHHHHHHHh
Confidence 579999999999976544433
No 216
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.26 E-value=0.0032 Score=63.45 Aligned_cols=59 Identities=17% Similarity=0.107 Sum_probs=44.8
Q ss_pred CCchhHHHHHHHHHc-CCCEEEEccCCCCchhhhhcc--cc-ccCCcEEEEcchHHHHHHHHH
Q 037567 13 VFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLP--PL-VTGKTALVVSPLISLMQDQVM 71 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~-~~~~l~~a~tGsGKT~~~~l~--~~-~~~~~~lil~P~~~l~~q~~~ 71 (374)
.|++-|.+++..+.. ++-+++.|+.|+|||.+.-.. ++ ..+.+++.++||..-+..+.+
T Consensus 381 ~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~e 443 (1102)
T PRK13826 381 RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEK 443 (1102)
T ss_pred CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHHH
Confidence 599999999998865 445689999999999653221 12 257889999999877776543
No 217
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.25 E-value=0.011 Score=55.47 Aligned_cols=116 Identities=16% Similarity=0.224 Sum_probs=79.0
Q ss_pred HHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCc-------eeeeecCCChHHHHHHHHhhhc----CCeeEEEEe
Q 037567 217 LVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVK-------AGTYHGQMGSKAREEAHRLFIR----DEIRVMVAT 285 (374)
Q Consensus 217 ~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~-------~~~~~~~~~~~~r~~~~~~f~~----g~~~ilv~t 285 (374)
.+..+...+ .+.+++|+|+......+.+.++..|+- .+++-...+ -..+++.|.. |.-.+|++.
T Consensus 620 ~~~nL~~~V--PgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaV 694 (821)
T KOG1133|consen 620 SISNLSNAV--PGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAV 694 (821)
T ss_pred HHHHHHhhC--CCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEE
Confidence 344444444 378999999999999999998876542 223322222 3455555553 443455544
Q ss_pred --ccccccccccC--ccEEEEECCCCC--------------------------------hhHHHHhhccCCCCCCceEEE
Q 037567 286 --MAFGMGIDKPD--VRHVIHYGCPKT--------------------------------LESYYQESGRCGRDGIASVCW 329 (374)
Q Consensus 286 --~~~~~G~d~~~--~~~vi~~~~p~s--------------------------------~~~~~Q~~GR~~R~~~~g~~~ 329 (374)
..+++|||+.+ .+.|+-+++|.. +....|.||||-|..++-.++
T Consensus 695 VGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i 774 (821)
T KOG1133|consen 695 VGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASI 774 (821)
T ss_pred eccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeE
Confidence 59999999988 677888887741 233479999999998888888
Q ss_pred EEeeccCC
Q 037567 330 LYYARSNF 337 (374)
Q Consensus 330 ~~~~~~~~ 337 (374)
++++...-
T Consensus 775 ~LlD~RY~ 782 (821)
T KOG1133|consen 775 YLLDKRYA 782 (821)
T ss_pred EEehhhhc
Confidence 88877543
No 218
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.20 E-value=0.019 Score=62.29 Aligned_cols=207 Identities=15% Similarity=0.109 Sum_probs=108.8
Q ss_pred CCchhHHHHHHHHHcC--CCEEEEccCCCCchhhhh--cccc-ccCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCC
Q 037567 13 VFRPYQKDVIQRIIEK--RDCLVVMATGSGKSLCYQ--LPPL-VTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQ 87 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~--~~~l~~a~tGsGKT~~~~--l~~~-~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~ 87 (374)
.+.+-|.+++..++.. +-.++.++.|+|||.+.- ..++ ..+.++++++|+..-+..+.+.... ....+.
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~~L~e~~g~---~A~Ti~--- 502 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQELRQKIPR---LASTFI--- 502 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHhcc---hhhhHH---
Confidence 4889999999998875 456889999999996532 2222 2578999999998877766654221 110000
Q ss_pred CchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhc--CCCCee
Q 037567 88 TDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFL--LGVPFV 165 (374)
Q Consensus 88 ~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i 165 (374)
.+...... .....|...+. . ....+..-++|||||+.++.. ..+..+.... .+.++|
T Consensus 503 ----~~l~~l~~--~~~~~tv~~fl---~---~~~~l~~~~vlIVDEAsMl~~---------~~~~~Ll~~a~~~garvV 561 (1960)
T TIGR02760 503 ----TWVKNLFN--DDQDHTVQGLL---D---KSSPFSNKDIFVVDEANKLSN---------NELLKLIDKAEQHNSKLI 561 (1960)
T ss_pred ----HHHHhhcc--cccchhHHHhh---c---ccCCCCCCCEEEEECCCCCCH---------HHHHHHHHHHhhcCCEEE
Confidence 00000000 00011111111 0 111123457999999998764 2233333322 367788
Q ss_pred EEEeecCcc-----cHHHHHHhcCCCCCeEEEeccCCCceeEEEEeecC-CcchHHHHHHHHHHhhcCCCcEEEEecchh
Q 037567 166 ALTATATEK-----VRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINR-GQSFVDELVQEILKSVAGAGSIIVYCMTIK 239 (374)
Q Consensus 166 ~~SaT~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~ 239 (374)
++--+-... .....+...++...... ...+..-.. ..... +......+...++.......+++|+..+..
T Consensus 562 lvGD~~QL~sV~aG~~f~~L~~~gv~t~~l~--~i~rq~~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~tliv~~t~~ 637 (1960)
T TIGR02760 562 LLNDSAQRQGMSAGSAIDLLKEGGVTTYAWV--DTKQQKASV--EISEAVDKLRVDYIASAWLDLTPDRQNSQVLATTHR 637 (1960)
T ss_pred EEcChhhcCccccchHHHHHHHCCCcEEEee--cccccCcce--eeeccCchHHHHHHHHHHHhcccccCceEEEcCCcH
Confidence 776652211 11123333333222221 111111111 12222 223344566677665555556999999988
Q ss_pred HHHHHHHHHHH
Q 037567 240 DVEEISKALKQ 250 (374)
Q Consensus 240 ~~~~l~~~l~~ 250 (374)
+...|....+.
T Consensus 638 dr~~Ln~~iR~ 648 (1960)
T TIGR02760 638 EQQDLTQIIRN 648 (1960)
T ss_pred HHHHHHHHHHH
Confidence 88887777654
No 219
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.18 E-value=0.0054 Score=51.38 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHc--------CCCEEEEccCCCCchhhhhcc---ccccCCcEEEEcchHHHHHHHHH
Q 037567 16 PYQKDVIQRIIE--------KRDCLVVMATGSGKSLCYQLP---PLVTGKTALVVSPLISLMQDQVM 71 (374)
Q Consensus 16 ~~Q~~~~~~~~~--------~~~~l~~a~tGsGKT~~~~l~---~~~~~~~~lil~P~~~l~~q~~~ 71 (374)
+.|..++..+.+ ...+++.|++|+|||..+... +...+..++++ +..++......
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i-t~~~l~~~l~~ 144 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII-TVADIMSAMKD 144 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE-EHHHHHHHHHH
Confidence 456656654432 146899999999999543322 22345556555 44455544333
No 220
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.17 E-value=0.0015 Score=49.28 Aligned_cols=32 Identities=16% Similarity=0.108 Sum_probs=20.2
Q ss_pred EEEEccCCCCchhhhhccccccCCcEEEEcch
Q 037567 31 CLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~ 62 (374)
+++.||+|+|||...-..+..-+..++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~ 32 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGS 32 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETT
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccc
Confidence 57999999999976543333334444444444
No 221
>PRK12377 putative replication protein; Provisional
Probab=97.16 E-value=0.0042 Score=52.19 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=26.7
Q ss_pred CCEEEEccCCCCchhhhhcc---ccccCCcEEEEcchHHHHHHHHHH
Q 037567 29 RDCLVVMATGSGKSLCYQLP---PLVTGKTALVVSPLISLMQDQVMS 72 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~---~~~~~~~~lil~P~~~l~~q~~~~ 72 (374)
.++++.||+|+|||..+... +..++..+ +.++..++..+....
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v-~~i~~~~l~~~l~~~ 147 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSV-IVVTVPDVMSRLHES 147 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCe-EEEEHHHHHHHHHHH
Confidence 57899999999999543221 22344555 444555677765544
No 222
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.13 E-value=0.0012 Score=59.18 Aligned_cols=57 Identities=23% Similarity=0.228 Sum_probs=42.3
Q ss_pred CCchhHHHHHHHH------HcCCCEEEEccCCCCchhhhhcc---ccccCCcEEEEcchHHHHHHH
Q 037567 13 VFRPYQKDVIQRI------IEKRDCLVVMATGSGKSLCYQLP---PLVTGKTALVVSPLISLMQDQ 69 (374)
Q Consensus 13 ~~~~~Q~~~~~~~------~~~~~~l~~a~tGsGKT~~~~l~---~~~~~~~~lil~P~~~l~~q~ 69 (374)
+|.+-|.+++..+ .++..+++.|+.|+|||+.+-.. +...+..+++++||...|...
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhc
Confidence 3677899998888 55788899999999999764221 122467899999997666543
No 223
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=97.12 E-value=0.00071 Score=53.24 Aligned_cols=118 Identities=22% Similarity=0.229 Sum_probs=51.3
Q ss_pred EEEccCCCCchhhhhcccc--cc--CCcEEEEcchHHHHHHHHHHHHH----cCCceEEcCCCCCchhhhhhhhcCCeeE
Q 037567 32 LVVMATGSGKSLCYQLPPL--VT--GKTALVVSPLISLMQDQVMSLKQ----RGINAEFLGSAQTDSSVQTKAETGYFQL 103 (374)
Q Consensus 32 l~~a~tGsGKT~~~~l~~~--~~--~~~~lil~P~~~l~~q~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i 103 (374)
++.|+-|-|||.+.-+.+. .. ..+++|.+|+.+-++..++.+.. .+.+.. .................|
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~i 76 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEE----KKKRIGQIIKLRFNKQRI 76 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC------------------------------CCC-
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhccccccccc----cccccccccccccccceE
Confidence 5789999999965433322 22 34799999998877766655432 121110 000000000111112345
Q ss_pred EEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCeeEEEeecCcc
Q 037567 104 LFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEK 174 (374)
Q Consensus 104 ~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~ 174 (374)
-+..|+.+.... ...+++|||||-.+.- ..+..+ ....+.++||.|....
T Consensus 77 ~f~~Pd~l~~~~---------~~~DlliVDEAAaIp~---------p~L~~l---l~~~~~vv~stTi~GY 126 (177)
T PF05127_consen 77 EFVAPDELLAEK---------PQADLLIVDEAAAIPL---------PLLKQL---LRRFPRVVFSTTIHGY 126 (177)
T ss_dssp -B--HHHHCCT-------------SCEEECTGGGS-H---------HHHHHH---HCCSSEEEEEEEBSST
T ss_pred EEECCHHHHhCc---------CCCCEEEEechhcCCH---------HHHHHH---HhhCCEEEEEeecccc
Confidence 555555443321 2348999999987643 233333 4467788999997653
No 224
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.09 E-value=0.002 Score=59.03 Aligned_cols=19 Identities=16% Similarity=0.300 Sum_probs=15.3
Q ss_pred CCEEEEccCCCCchhhhhc
Q 037567 29 RDCLVVMATGSGKSLCYQL 47 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l 47 (374)
..+++.||+|+|||..+..
T Consensus 37 ~~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARI 55 (413)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3689999999999976543
No 225
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.08 E-value=0.0011 Score=66.17 Aligned_cols=58 Identities=19% Similarity=0.129 Sum_probs=44.2
Q ss_pred CCchhHHHHHHHHHcCC-CEEEEccCCCCchhhhhc--cccc-cCCcEEEEcchHHHHHHHH
Q 037567 13 VFRPYQKDVIQRIIEKR-DCLVVMATGSGKSLCYQL--PPLV-TGKTALVVSPLISLMQDQV 70 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~~-~~l~~a~tGsGKT~~~~l--~~~~-~~~~~lil~P~~~l~~q~~ 70 (374)
.+++-|.+++..++.++ -+++.|++|+|||.+.-. .++. .+.+++.++||...+....
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~ 407 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLE 407 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHh
Confidence 49999999999999865 468899999999975321 1122 4788999999987776543
No 226
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.08 E-value=0.0067 Score=53.30 Aligned_cols=42 Identities=21% Similarity=0.192 Sum_probs=26.7
Q ss_pred CCCEEEEccCCCCchhhhhcc---ccccCCcEEEEcchHHHHHHHH
Q 037567 28 KRDCLVVMATGSGKSLCYQLP---PLVTGKTALVVSPLISLMQDQV 70 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~---~~~~~~~~lil~P~~~l~~q~~ 70 (374)
+.++++.||||+|||..+... ++.++..|+++ +..++..+..
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~-t~~~l~~~l~ 227 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYR-TADELIEILR 227 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEE-EHHHHHHHHH
Confidence 578999999999999543221 23345556554 4456666544
No 227
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.017 Score=47.82 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=29.1
Q ss_pred CCCEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHH
Q 037567 28 KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVM 71 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~ 71 (374)
-+.+++.+|+|+|||+++-..+-. ..-++|=+-..+|++...-
T Consensus 211 pkgvllygppgtgktl~aravanr-tdacfirvigselvqkyvg 253 (435)
T KOG0729|consen 211 PKGVLLYGPPGTGKTLCARAVANR-TDACFIRVIGSELVQKYVG 253 (435)
T ss_pred CCceEEeCCCCCchhHHHHHHhcc-cCceEEeehhHHHHHHHhh
Confidence 478899999999999986444333 3445555555577765443
No 228
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.03 E-value=0.00059 Score=52.05 Aligned_cols=40 Identities=18% Similarity=0.058 Sum_probs=25.9
Q ss_pred CCCEEEEccCCCCchhhhhccccc-cCC--cEEEEcchHHHHH
Q 037567 28 KRDCLVVMATGSGKSLCYQLPPLV-TGK--TALVVSPLISLMQ 67 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~~~-~~~--~~lil~P~~~l~~ 67 (374)
+..+++.||+|+|||......+.. ... .++++.+......
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~ 44 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEE 44 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcccc
Confidence 456899999999999765433332 222 5777777654433
No 229
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0037 Score=54.55 Aligned_cols=73 Identities=14% Similarity=0.093 Sum_probs=46.9
Q ss_pred CCEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhhhhhhhcCCeeEEEEcC
Q 037567 29 RDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTP 108 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~ 108 (374)
+.+++++|+|+|||+.+- ++......+++=+-+..|+..|.-+-++.
T Consensus 246 kgvLm~GPPGTGKTlLAK-AvATEc~tTFFNVSsstltSKwRGeSEKl-------------------------------- 292 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAK-AVATECGTTFFNVSSSTLTSKWRGESEKL-------------------------------- 292 (491)
T ss_pred ceeeeeCCCCCcHHHHHH-HHHHhhcCeEEEechhhhhhhhccchHHH--------------------------------
Confidence 578999999999998642 23333446666666667777655443221
Q ss_pred cccccCchhhHHHHHhcCccEEEEeccchhhc
Q 037567 109 EKACIIPISFWSKLLKAGVCLFAVDEAHCISE 140 (374)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~ 140 (374)
.+ -.+....+.....|+|||++.+..
T Consensus 293 ---vR---lLFemARfyAPStIFiDEIDslcs 318 (491)
T KOG0738|consen 293 ---VR---LLFEMARFYAPSTIFIDEIDSLCS 318 (491)
T ss_pred ---HH---HHHHHHHHhCCceeehhhHHHHHh
Confidence 11 222334455667899999999964
No 230
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.02 E-value=0.00046 Score=58.08 Aligned_cols=34 Identities=21% Similarity=0.120 Sum_probs=25.2
Q ss_pred hHHHHHHHHHc------CCCEEEEccCCCCchhhhhcccc
Q 037567 17 YQKDVIQRIIE------KRDCLVVMATGSGKSLCYQLPPL 50 (374)
Q Consensus 17 ~Q~~~~~~~~~------~~~~l~~a~tGsGKT~~~~l~~~ 50 (374)
.|+...+.+.+ ..+.++.||+|+|||.++.+.+.
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar 79 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFAR 79 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHH
Confidence 67777776654 24679999999999987655443
No 231
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.00 E-value=0.0044 Score=51.32 Aligned_cols=103 Identities=15% Similarity=0.201 Sum_probs=53.7
Q ss_pred CEEEEccCCCCchhhhh-c-c-cc--ccCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhhhhhhhcCCeeEE
Q 037567 30 DCLVVMATGSGKSLCYQ-L-P-PL--VTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLL 104 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~-l-~-~~--~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 104 (374)
.+++.||+|+|||-... + . +. .++.+++++... +........+.....
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~-~f~~~~~~~~~~~~~-------------------------- 88 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAE-EFIREFADALRDGEI-------------------------- 88 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHH-HHHHHHHHHHHTTSH--------------------------
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHH-HHHHHHHHHHHcccc--------------------------
Confidence 47999999999995311 1 1 11 135566666544 566655555443100
Q ss_pred EEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCeeEEEeecCcc
Q 037567 105 FMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEK 174 (374)
Q Consensus 105 i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~ 174 (374)
... .....+.+++++|++|.+.....--...+..++..... +.++|+.|..++..
T Consensus 89 -----------~~~--~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~--~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 89 -----------EEF--KDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIES--GKQLILTSDRPPSE 143 (219)
T ss_dssp -----------HHH--HHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHT--TSEEEEEESS-TTT
T ss_pred -----------hhh--hhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhh--CCeEEEEeCCCCcc
Confidence 011 11235789999999999865321112223344444332 44555555455443
No 232
>PRK05642 DNA replication initiation factor; Validated
Probab=97.00 E-value=0.003 Score=52.96 Aligned_cols=33 Identities=18% Similarity=0.084 Sum_probs=20.4
Q ss_pred CCEEEEccCCCCchhhhhcc---ccccCCcEEEEcc
Q 037567 29 RDCLVVMATGSGKSLCYQLP---PLVTGKTALVVSP 61 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~---~~~~~~~~lil~P 61 (374)
..++++||+|+|||-..... +..++.+++++..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~ 81 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL 81 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH
Confidence 45789999999999542211 1223556666543
No 233
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.98 E-value=0.0092 Score=48.11 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=34.3
Q ss_pred EEEEccCCCCchhhhh---ccccccCCcEEEEcchHHHHHHHHHHHHHcCCc
Q 037567 31 CLVVMATGSGKSLCYQ---LPPLVTGKTALVVSPLISLMQDQVMSLKQRGIN 79 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~~---l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 79 (374)
+++.||+|+|||...+ ...+..+.+++++... +...++.+.+..+|..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e-~~~~~~~~~~~~~g~~ 52 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE-ESPEELIENAESLGWD 52 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC-CCHHHHHHHHHHcCCC
Confidence 5899999999996533 3334567788888654 5677777777777654
No 234
>PRK06893 DNA replication initiation factor; Validated
Probab=96.97 E-value=0.0025 Score=53.27 Aligned_cols=49 Identities=8% Similarity=0.146 Sum_probs=26.1
Q ss_pred cCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCeeEEEeecCccc
Q 037567 125 AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175 (374)
Q Consensus 125 ~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~ 175 (374)
.+.+++++||+|.+..........+..++.... .+.+++.+|++..+..
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~--~~~~illits~~~p~~ 138 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKE--QGKTLLLISADCSPHA 138 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHH--cCCcEEEEeCCCChHH
Confidence 356899999999875321111112233333322 1345667777765543
No 235
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.96 E-value=0.0034 Score=55.26 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=27.1
Q ss_pred CCchhHHHHHHHHHcCC----CEEEEccCCCCchhhh
Q 037567 13 VFRPYQKDVIQRIIEKR----DCLVVMATGSGKSLCY 45 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~~----~~l~~a~tGsGKT~~~ 45 (374)
.++|||...+..+.+.+ -.++.||.|.|||..+
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A 39 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALA 39 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHH
Confidence 35899999999998753 4689999999999553
No 236
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.95 E-value=0.0028 Score=54.03 Aligned_cols=49 Identities=27% Similarity=0.272 Sum_probs=27.1
Q ss_pred HHHhcCccEEEEeccchhhcc-cCcchHHHHHHHHHHHhcCCCCeeEEEeec
Q 037567 121 KLLKAGVCLFAVDEAHCISEW-GHDFRLEYKQLDKLRTFLLGVPFVALTATA 171 (374)
Q Consensus 121 ~~~~~~~~~vviDE~h~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 171 (374)
-+...+.+++||||+|++... ....+...+.++.+.+. -..++|++ +|.
T Consensus 140 llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~Ne-L~ipiV~v-Gt~ 189 (302)
T PF05621_consen 140 LLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNE-LQIPIVGV-GTR 189 (302)
T ss_pred HHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhc-cCCCeEEe-ccH
Confidence 334467899999999998652 22223233333333222 24666655 564
No 237
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.94 E-value=0.0057 Score=51.80 Aligned_cols=65 Identities=11% Similarity=0.184 Sum_probs=42.8
Q ss_pred cCCCCCchhHHHHHHHHH-------cCCCEEEEccCCCCchhhhhc---cccccCCcEEEEcchHHHHHHHHHHHH
Q 037567 9 FGYSVFRPYQKDVIQRII-------EKRDCLVVMATGSGKSLCYQL---PPLVTGKTALVVSPLISLMQDQVMSLK 74 (374)
Q Consensus 9 ~~~~~~~~~Q~~~~~~~~-------~~~~~l~~a~tGsGKT~~~~l---~~~~~~~~~lil~P~~~l~~q~~~~~~ 74 (374)
+.|+-....+.+++..+. ++.++++.||+|+|||..+.. .+. +.+.-++++++.+++.++...+.
T Consensus 79 ~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 79 FDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred ccccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEEEHHHHHHHHHHHHh
Confidence 455555556666665543 467999999999999954322 233 44455566677788887776654
No 238
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.92 E-value=0.018 Score=51.18 Aligned_cols=130 Identities=19% Similarity=0.132 Sum_probs=74.4
Q ss_pred CCCEEEEccCCCCchhhhhc-c----ccccCCc-EEEEcch--HHHHHHHHHHHHHcCCceEEcCCCCCchhhhhhhhcC
Q 037567 28 KRDCLVVMATGSGKSLCYQL-P----PLVTGKT-ALVVSPL--ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETG 99 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l-~----~~~~~~~-~lil~P~--~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (374)
++.+.++||||.|||.+.+- + .+...++ .||-+.+ ..-++|......-.+..+.++.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~--------------- 267 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVY--------------- 267 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEec---------------
Confidence 56678999999999966432 2 1233444 4555554 3445565555555555544433
Q ss_pred CeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcC-CCCeeEEEeecCcccHHH
Q 037567 100 YFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLL-GVPFVALTATATEKVRID 178 (374)
Q Consensus 100 ~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~SaT~~~~~~~~ 178 (374)
+|.-|.. .-..+.+.++|.||=+-+- ......+..+........ ....+.+|||....+.+.
T Consensus 268 -------~~~el~~------ai~~l~~~d~ILVDTaGrs----~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlke 330 (407)
T COG1419 268 -------SPKELAE------AIEALRDCDVILVDTAGRS----QYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKE 330 (407)
T ss_pred -------CHHHHHH------HHHHhhcCCEEEEeCCCCC----ccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHH
Confidence 3322211 1223456688888877642 222222234444433332 234688999999999988
Q ss_pred HHHhcCCCCCe
Q 037567 179 IINSLKLKNPY 189 (374)
Q Consensus 179 ~~~~~~~~~~~ 189 (374)
+...+..-+..
T Consensus 331 i~~~f~~~~i~ 341 (407)
T COG1419 331 IIKQFSLFPID 341 (407)
T ss_pred HHHHhccCCcc
Confidence 88887765543
No 239
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.91 E-value=0.0013 Score=52.36 Aligned_cols=60 Identities=18% Similarity=0.285 Sum_probs=27.8
Q ss_pred cCCCCCchhHHHHHHHHH------cCCCEEEEccCCCCchhhhhcc---ccccCCcEEEEcchHHHHHHH
Q 037567 9 FGYSVFRPYQKDVIQRII------EKRDCLVVMATGSGKSLCYQLP---PLVTGKTALVVSPLISLMQDQ 69 (374)
Q Consensus 9 ~~~~~~~~~Q~~~~~~~~------~~~~~l~~a~tGsGKT~~~~l~---~~~~~~~~lil~P~~~l~~q~ 69 (374)
+.|...++.+...+..+. ++.++++.||+|+|||..+... ++.++..++++ +..+|.+..
T Consensus 22 ~d~~~~~~~~~~~~~~l~~~~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 22 FDFSNERGIDKAQIAQLAALEFIENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFI-TASDLLDEL 90 (178)
T ss_dssp ------------HHHHHHHH-S-SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE-EHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHhcCCCcccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEe-ecCceeccc
Confidence 444444455555555442 3578899999999999553322 33456666664 555666654
No 240
>PRK14974 cell division protein FtsY; Provisional
Probab=96.91 E-value=0.021 Score=50.29 Aligned_cols=121 Identities=12% Similarity=0.089 Sum_probs=62.2
Q ss_pred CEEEEccCCCCchhhhhccc--c-ccCCcEEEEcc-h--HHHHHHHHHHHHHcCCceEEcCCCCCchhhhhhhhcCCeeE
Q 037567 30 DCLVVMATGSGKSLCYQLPP--L-VTGKTALVVSP-L--ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQL 103 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~l~~--~-~~~~~~lil~P-~--~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 103 (374)
-+++.|++|+|||.+....+ + ..+.+++++.. + .....|+.......|..+.....+..
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~d--------------- 206 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGAD--------------- 206 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCC---------------
Confidence 45789999999996543221 2 23556655543 2 45566776666666654331111000
Q ss_pred EEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHh-cCCCCeeEEEeecCcccH
Q 037567 104 LFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTF-LLGVPFVALTATATEKVR 176 (374)
Q Consensus 104 ~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~SaT~~~~~~ 176 (374)
|. .............+.++|++|.++++.... ..+..+..+... .++..++.++||......
T Consensus 207 ----p~---~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~----~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~ 269 (336)
T PRK14974 207 ----PA---AVAYDAIEHAKARGIDVVLIDTAGRMHTDA----NLMDELKKIVRVTKPDLVIFVGDALAGNDAV 269 (336)
T ss_pred ----HH---HHHHHHHHHHHhCCCCEEEEECCCccCCcH----HHHHHHHHHHHhhCCceEEEeeccccchhHH
Confidence 00 000111122233567899999999764211 111223333222 245567888887755433
No 241
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.90 E-value=0.0058 Score=59.53 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=24.7
Q ss_pred CccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCeeEEEeecCc
Q 037567 126 GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATE 173 (374)
Q Consensus 126 ~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~ 173 (374)
...++++||+|.+.. .....+.....+..+++.++|..+
T Consensus 109 ~~~IL~IDEIh~Ln~---------~qQdaLL~~lE~g~IiLI~aTTen 147 (725)
T PRK13341 109 KRTILFIDEVHRFNK---------AQQDALLPWVENGTITLIGATTEN 147 (725)
T ss_pred CceEEEEeChhhCCH---------HHHHHHHHHhcCceEEEEEecCCC
Confidence 346899999998754 122333344446677888777554
No 242
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.88 E-value=0.0085 Score=56.71 Aligned_cols=148 Identities=11% Similarity=-0.003 Sum_probs=77.9
Q ss_pred HHcCCCEEEEccCCCCchhhhh---ccccc-cCCcEEEEcchHHHHHHHHHHHHHcCCceE--EcCCCCCchhhhhhhhc
Q 037567 25 IIEKRDCLVVMATGSGKSLCYQ---LPPLV-TGKTALVVSPLISLMQDQVMSLKQRGINAE--FLGSAQTDSSVQTKAET 98 (374)
Q Consensus 25 ~~~~~~~l~~a~tGsGKT~~~~---l~~~~-~~~~~lil~P~~~l~~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 98 (374)
.++.+-.++.+|=|.|||.+.. ..++. .+.+++|.+|...-+.+.++.++..-.... -+...... ......
T Consensus 184 ~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~---iv~vkg 260 (752)
T PHA03333 184 EYGKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFK---IVTLKG 260 (752)
T ss_pred HHhhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCce---EEEeeC
Confidence 3446667889999999994432 11222 478899999999888888877654311100 00000000 000111
Q ss_pred CCeeEEEEcCcccc------cCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhc--CCCCeeEEEee
Q 037567 99 GYFQLLFMTPEKAC------IIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFL--LGVPFVALTAT 170 (374)
Q Consensus 99 ~~~~i~i~T~~~l~------~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~SaT 170 (374)
+...|.+..|.-.. .+..+..+......++++|+|||+.+.. ..+..+...+ .+.+++++|.+
T Consensus 261 g~E~I~f~~p~gak~G~sti~F~Ars~~s~RG~~~DLLIVDEAAfI~~---------~~l~aIlP~l~~~~~k~IiISS~ 331 (752)
T PHA03333 261 TDENLEYISDPAAKEGKTTAHFLASSPNAARGQNPDLVIVDEAAFVNP---------GALLSVLPLMAVKGTKQIHISSP 331 (752)
T ss_pred CeeEEEEecCcccccCcceeEEecccCCCcCCCCCCEEEEECcccCCH---------HHHHHHHHHHccCCCceEEEeCC
Confidence 11123333322111 0000111222334578999999998865 2233333333 26788899888
Q ss_pred cCcccHHHHHHhcC
Q 037567 171 ATEKVRIDIINSLK 184 (374)
Q Consensus 171 ~~~~~~~~~~~~~~ 184 (374)
-.......++..+.
T Consensus 332 ~~~~s~tS~L~nLk 345 (752)
T PHA03333 332 VDADSWISRVGEVK 345 (752)
T ss_pred CCcchHHHHhhhhc
Confidence 76666555555443
No 243
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.87 E-value=0.012 Score=52.84 Aligned_cols=124 Identities=13% Similarity=0.016 Sum_probs=66.0
Q ss_pred CCEEEEccCCCCchhhhhcccc--c-----cCCcEE-EEcch--HHHHHHHHHHHHHcCCceEEcCCCCCchhhhhhhhc
Q 037567 29 RDCLVVMATGSGKSLCYQLPPL--V-----TGKTAL-VVSPL--ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAET 98 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~~~--~-----~~~~~l-il~P~--~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (374)
+.+++.||||+|||.+..-.+. . .+.++. +-+.+ ..-..|+.......|..+....
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~-------------- 240 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIE-------------- 240 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeC--------------
Confidence 4578899999999976542221 1 234444 44443 2334454444444554432111
Q ss_pred CCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcC-C-CCeeEEEeecCcccH
Q 037567 99 GYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLL-G-VPFVALTATATEKVR 176 (374)
Q Consensus 99 ~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~i~~SaT~~~~~~ 176 (374)
+++.+. ... ....+.++|+||++.+... ....+..+........ + ...+.+|||......
T Consensus 241 --------~~~~l~----~~L--~~~~~~DlVLIDTaGr~~~----~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~ 302 (388)
T PRK12723 241 --------SFKDLK----EEI--TQSKDFDLVLVDTIGKSPK----DFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDV 302 (388)
T ss_pred --------cHHHHH----HHH--HHhCCCCEEEEcCCCCCcc----CHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHH
Confidence 111110 111 1236789999999987642 1112234444433322 2 467999999988776
Q ss_pred HHHHHhcC
Q 037567 177 IDIINSLK 184 (374)
Q Consensus 177 ~~~~~~~~ 184 (374)
..+...+.
T Consensus 303 ~~~~~~~~ 310 (388)
T PRK12723 303 KEIFHQFS 310 (388)
T ss_pred HHHHHHhc
Confidence 66655553
No 244
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.86 E-value=0.0051 Score=51.58 Aligned_cols=16 Identities=19% Similarity=0.169 Sum_probs=13.8
Q ss_pred CCEEEEccCCCCchhh
Q 037567 29 RDCLVVMATGSGKSLC 44 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~ 44 (374)
..+++.||+|+|||..
T Consensus 46 ~~l~l~Gp~G~GKThL 61 (235)
T PRK08084 46 GYIYLWSREGAGRSHL 61 (235)
T ss_pred CeEEEECCCCCCHHHH
Confidence 5689999999999954
No 245
>PRK08116 hypothetical protein; Validated
Probab=96.86 E-value=0.014 Score=49.93 Aligned_cols=43 Identities=14% Similarity=0.148 Sum_probs=25.7
Q ss_pred CEEEEccCCCCchhhhhcc---ccccCCcEEEEcchHHHHHHHHHHH
Q 037567 30 DCLVVMATGSGKSLCYQLP---PLVTGKTALVVSPLISLMQDQVMSL 73 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~l~---~~~~~~~~lil~P~~~l~~q~~~~~ 73 (374)
.+++.|++|+|||..+... +..++..+++ .+..++..++...+
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~-~~~~~ll~~i~~~~ 161 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIF-VNFPQLLNRIKSTY 161 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE-EEHHHHHHHHHHHH
Confidence 4899999999999653322 1223445544 45556666554443
No 246
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.79 E-value=0.0082 Score=55.22 Aligned_cols=43 Identities=21% Similarity=0.172 Sum_probs=26.1
Q ss_pred CCEEEEccCCCCchhhhhcc---ccccCCcEEEEcchHHHHHHHHHH
Q 037567 29 RDCLVVMATGSGKSLCYQLP---PLVTGKTALVVSPLISLMQDQVMS 72 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~---~~~~~~~~lil~P~~~l~~q~~~~ 72 (374)
+.+++.||+|+|||...... +...+.+++++.. ..+..+....
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~-~~f~~~~~~~ 187 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS-ELFTEHLVSA 187 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH-HHHHHHHHHH
Confidence 45899999999999543221 2234667776654 3555544433
No 247
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.78 E-value=0.0065 Score=55.64 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=13.8
Q ss_pred EEEEccCCCCchhhhh
Q 037567 31 CLVVMATGSGKSLCYQ 46 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~~ 46 (374)
++++||+|+|||.++.
T Consensus 43 ~Lf~GP~GtGKTTlAr 58 (484)
T PRK14956 43 YIFFGPRGVGKTTIAR 58 (484)
T ss_pred EEEECCCCCCHHHHHH
Confidence 6999999999997654
No 248
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.76 E-value=0.0073 Score=56.07 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=26.0
Q ss_pred CCEEEEccCCCCchhhhhcc---cccc--CCcEEEEcchHHHHHHHHHHH
Q 037567 29 RDCLVVMATGSGKSLCYQLP---PLVT--GKTALVVSPLISLMQDQVMSL 73 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~---~~~~--~~~~lil~P~~~l~~q~~~~~ 73 (374)
+.+++.||+|+|||...... +... +.+++++ +...+..+....+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi-~~~~~~~~~~~~~ 197 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYV-TSEKFTNDFVNAL 197 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEE-EHHHHHHHHHHHH
Confidence 35789999999999543221 1122 4455555 4445666554444
No 249
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.76 E-value=0.0075 Score=47.26 Aligned_cols=35 Identities=26% Similarity=0.190 Sum_probs=22.4
Q ss_pred EEEEccCCCCchhhhhccc---cccCCcEEEEcchHHH
Q 037567 31 CLVVMATGSGKSLCYQLPP---LVTGKTALVVSPLISL 65 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~~l~~---~~~~~~~lil~P~~~l 65 (374)
+++.|++|+|||......+ ...+.+++++......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch
Confidence 5789999999996543221 2246667776665433
No 250
>PHA02533 17 large terminase protein; Provisional
Probab=96.75 E-value=0.0071 Score=56.84 Aligned_cols=63 Identities=19% Similarity=0.205 Sum_probs=49.6
Q ss_pred CCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcc-----ccccCCcEEEEcchHHHHHHHHHHHHH
Q 037567 13 VFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP-----PLVTGKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~-----~~~~~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
.|.|+|.+.+..+..++-.++..+=..|||.+.... +...+..+++++|+...+...++.++.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~ 126 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQ 126 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 488999999988866666788899999999654321 224567999999999999988887764
No 251
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.74 E-value=0.0019 Score=63.64 Aligned_cols=63 Identities=14% Similarity=0.148 Sum_probs=49.2
Q ss_pred CCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccc---cc----cCCcEEEEcchHHHHHHHHHHHHHc
Q 037567 12 SVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPP---LV----TGKTALVVSPLISLMQDQVMSLKQR 76 (374)
Q Consensus 12 ~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~---~~----~~~~~lil~P~~~l~~q~~~~~~~~ 76 (374)
..|+|-|.+++.. ...+++|.|.+|||||.+..--+ +. ...++|+++-|+..+.++.+.+.+.
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 4689999999864 45789999999999996532111 11 3467999999999999999998875
No 252
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.73 E-value=0.0018 Score=54.03 Aligned_cols=98 Identities=17% Similarity=0.159 Sum_probs=54.5
Q ss_pred CCCEEEEccCCCCchhhhh---cccccc-CCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhhhhhhhcCCeeE
Q 037567 28 KRDCLVVMATGSGKSLCYQ---LPPLVT-GKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQL 103 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~---l~~~~~-~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 103 (374)
+..+++.|++|+|||...+ ...+.+ +.++++++-. +-..++.+.+..+|....-. ...+...+
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~e-e~~~~l~~~~~s~g~d~~~~------------~~~g~l~~ 85 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFE-EPPEELIENMKSFGWDLEEY------------EDSGKLKI 85 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESS-S-HHHHHHHHHTTTS-HHHH------------HHTTSEEE
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEec-CCHHHHHHHHHHcCCcHHHH------------hhcCCEEE
Confidence 5678999999999995533 334456 7888888743 55677888888876542211 11111122
Q ss_pred EEEcCc-------ccccCchhhHHHHHhcCccEEEEeccchh
Q 037567 104 LFMTPE-------KACIIPISFWSKLLKAGVCLFAVDEAHCI 138 (374)
Q Consensus 104 ~i~T~~-------~l~~~~~~~~~~~~~~~~~~vviDE~h~~ 138 (374)
+=+.+. .+..+...........+.+.+|||-...+
T Consensus 86 ~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 86 IDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp EESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred EecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 222222 22222233333333445689999999888
No 253
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.70 E-value=0.013 Score=57.28 Aligned_cols=90 Identities=18% Similarity=0.190 Sum_probs=72.0
Q ss_pred chHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHH----cCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEecc
Q 037567 212 SFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQ----LGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMA 287 (374)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~ 287 (374)
.+....+..++.....+.+++|.+|+..-+.+.++.+++ .++++..++|+++..++...+..+.+|+.+|+|+|+.
T Consensus 294 GKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ 373 (681)
T PRK10917 294 GKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHA 373 (681)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHH
Confidence 333444445555556788999999999999988887765 3688999999999999999999999999999999984
Q ss_pred -ccccccccCccEEE
Q 037567 288 -FGMGIDKPDVRHVI 301 (374)
Q Consensus 288 -~~~G~d~~~~~~vi 301 (374)
+...+.+.++.+||
T Consensus 374 ll~~~v~~~~l~lvV 388 (681)
T PRK10917 374 LIQDDVEFHNLGLVI 388 (681)
T ss_pred HhcccchhcccceEE
Confidence 44566777787766
No 254
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.68 E-value=0.0084 Score=53.32 Aligned_cols=126 Identities=17% Similarity=0.080 Sum_probs=64.8
Q ss_pred CCEEEEccCCCCchhhhhcccc---ccCCcEEEEcc-h--HHHHHHHHHHHHHcCCceEEcCCCCCchhhhhhhhcCCee
Q 037567 29 RDCLVVMATGSGKSLCYQLPPL---VTGKTALVVSP-L--ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQ 102 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~~~---~~~~~~lil~P-~--~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (374)
+.+.+.||+|+|||.+....+. ..+.++.++.. + ...++|+.......++.+..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v-------------------- 301 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA-------------------- 301 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEe--------------------
Confidence 4568999999999966443221 23555554443 2 24566666554444433221
Q ss_pred EEEEcCcccccCchhhHHHHH-hcCccEEEEeccchhhcccCcchHHHHHHHHHHHhc-CCCCeeEEEeecCcccHHHHH
Q 037567 103 LLFMTPEKACIIPISFWSKLL-KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFL-LGVPFVALTATATEKVRIDII 180 (374)
Q Consensus 103 i~i~T~~~l~~~~~~~~~~~~-~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~SaT~~~~~~~~~~ 180 (374)
..+|+.+.. ...... ..++++|+||-+-+.... ...+..+.+..... +....+.+|||........+.
T Consensus 302 --~~d~~~L~~----aL~~lk~~~~~DvVLIDTaGRs~kd----~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~ 371 (436)
T PRK11889 302 --VRDEAAMTR----ALTYFKEEARVDYILIDTAGKNYRA----SETVEEMIETMGQVEPDYICLTLSASMKSKDMIEII 371 (436)
T ss_pred --cCCHHHHHH----HHHHHHhccCCCEEEEeCccccCcC----HHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHH
Confidence 123332221 111111 125789999988764321 11223333333322 233456789987776655566
Q ss_pred HhcC
Q 037567 181 NSLK 184 (374)
Q Consensus 181 ~~~~ 184 (374)
..+.
T Consensus 372 ~~F~ 375 (436)
T PRK11889 372 TNFK 375 (436)
T ss_pred HHhc
Confidence 5554
No 255
>PRK06921 hypothetical protein; Provisional
Probab=96.67 E-value=0.018 Score=49.14 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=25.0
Q ss_pred CCCEEEEccCCCCchhhhhc---ccccc-CCcEEEEcchHHHHHHH
Q 037567 28 KRDCLVVMATGSGKSLCYQL---PPLVT-GKTALVVSPLISLMQDQ 69 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l---~~~~~-~~~~lil~P~~~l~~q~ 69 (374)
+.++++.|++|+|||..+.. .+..+ +..++++. ..++..+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~-~~~l~~~l 161 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP-FVEGFGDL 161 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE-HHHHHHHH
Confidence 56789999999999954322 12233 55565554 44555543
No 256
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=96.65 E-value=0.0076 Score=59.26 Aligned_cols=41 Identities=15% Similarity=0.409 Sum_probs=30.2
Q ss_pred CcchHHHHHHHHHHhh------cCCCcEEEEecchhHHHHHHHHHHH
Q 037567 210 GQSFVDELVQEILKSV------AGAGSIIVYCMTIKDVEEISKALKQ 250 (374)
Q Consensus 210 ~~~~~~~~~~~~~~~~------~~~~~~lVf~~~~~~~~~l~~~l~~ 250 (374)
+...+.+++.++.... .+.+++||||++..+|..+.+.|..
T Consensus 271 Kw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 271 KWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred CHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 3445566666665542 3457899999999999999998865
No 257
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.63 E-value=0.0052 Score=57.41 Aligned_cols=61 Identities=18% Similarity=0.183 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHc-----C----CCEEEEccCCCCchhhhhccc-----c--ccCCcEEEEcchHHHHHHHHHHHHHc
Q 037567 16 PYQKDVIQRIIE-----K----RDCLVVMATGSGKSLCYQLPP-----L--VTGKTALVVSPLISLMQDQVMSLKQR 76 (374)
Q Consensus 16 ~~Q~~~~~~~~~-----~----~~~l~~a~tGsGKT~~~~l~~-----~--~~~~~~lil~P~~~l~~q~~~~~~~~ 76 (374)
|+|..++..++- + +.+++.-|=|.|||......+ + ..+..+++++++++.+...++.+..+
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~ 77 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKM 77 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHH
Confidence 688888887762 1 356888899999995432221 1 24678999999999999999888765
No 258
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.61 E-value=0.0025 Score=62.73 Aligned_cols=63 Identities=14% Similarity=0.160 Sum_probs=49.2
Q ss_pred CCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccc---c----ccCCcEEEEcchHHHHHHHHHHHHHc
Q 037567 12 SVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPP---L----VTGKTALVVSPLISLMQDQVMSLKQR 76 (374)
Q Consensus 12 ~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~---~----~~~~~~lil~P~~~l~~q~~~~~~~~ 76 (374)
..|+|-|.+++.. ...+++|.|++|||||.+..--+ + ....++|+++-|+..+.++.+.+.+.
T Consensus 8 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 8 DSLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred HhcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHH
Confidence 4699999999874 45789999999999996532111 1 13567999999999999999998775
No 259
>PF13173 AAA_14: AAA domain
Probab=96.56 E-value=0.0096 Score=44.68 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=24.2
Q ss_pred CccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCeeEEEeecCc
Q 037567 126 GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATE 173 (374)
Q Consensus 126 ~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~ 173 (374)
.-.++++||+|.+.++. ..+..+....++. .+.+|++...
T Consensus 61 ~~~~i~iDEiq~~~~~~-------~~lk~l~d~~~~~-~ii~tgS~~~ 100 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWE-------DALKFLVDNGPNI-KIILTGSSSS 100 (128)
T ss_pred CCcEEEEehhhhhccHH-------HHHHHHHHhccCc-eEEEEccchH
Confidence 44689999999987644 4455555543333 4555555443
No 260
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.02 Score=49.68 Aligned_cols=40 Identities=23% Similarity=0.215 Sum_probs=27.0
Q ss_pred CCCEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHH
Q 037567 28 KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQD 68 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q 68 (374)
-+.+++.||+|+|||+.+-..+-+.+.. +|=+...+|++.
T Consensus 185 PKGVLLYGPPGTGKTLLAkAVA~~T~At-FIrvvgSElVqK 224 (406)
T COG1222 185 PKGVLLYGPPGTGKTLLAKAVANQTDAT-FIRVVGSELVQK 224 (406)
T ss_pred CCceEeeCCCCCcHHHHHHHHHhccCce-EEEeccHHHHHH
Confidence 4789999999999998754444444444 444444477764
No 261
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=96.50 E-value=0.042 Score=55.13 Aligned_cols=142 Identities=15% Similarity=0.134 Sum_probs=105.4
Q ss_pred cchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHc----CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEec
Q 037567 211 QSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQL----GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM 286 (374)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~ 286 (374)
..+.+-.++.......+++++.|.+||.--|++=++.++++ ++++..+..-.+.++..++++...+|+++|+|.|.
T Consensus 626 FGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH 705 (1139)
T COG1197 626 FGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH 705 (1139)
T ss_pred CcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEech
Confidence 45567778888888889999999999988777766666653 66777888888999999999999999999999998
Q ss_pred -cccccccccCccEEEEECCCCChhHHHHhhc-------------------------cCCC---CCCceEEEEEeeccCC
Q 037567 287 -AFGMGIDKPDVRHVIHYGCPKTLESYYQESG-------------------------RCGR---DGIASVCWLYYARSNF 337 (374)
Q Consensus 287 -~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~G-------------------------R~~R---~~~~g~~~~~~~~~~~ 337 (374)
.++.++-+.++-.+|.-. .||.| |+.- .|-....++-.+|.+.
T Consensus 706 rLL~kdv~FkdLGLlIIDE--------EqRFGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R 777 (1139)
T COG1197 706 RLLSKDVKFKDLGLLIIDE--------EQRFGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDR 777 (1139)
T ss_pred HhhCCCcEEecCCeEEEec--------hhhcCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCC
Confidence 777888888888777211 11111 1111 1344566777777777
Q ss_pred CcccceeccccchHHHHHHHHHH
Q 037567 338 AKGDFYCGESQTENQRTAIMESL 360 (374)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~l 360 (374)
--++-+.....+...+..+++++
T Consensus 778 ~pV~T~V~~~d~~~ireAI~REl 800 (1139)
T COG1197 778 LPVKTFVSEYDDLLIREAILREL 800 (1139)
T ss_pred cceEEEEecCChHHHHHHHHHHH
Confidence 77777777777777777776665
No 262
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=96.50 E-value=0.011 Score=54.33 Aligned_cols=146 Identities=12% Similarity=0.074 Sum_probs=80.8
Q ss_pred CCchhHHHHHHHHHc------C----CCEEEEccCCCCchhhhh-------ccccccCCcEEEEcchHHHHHHHHHHHHH
Q 037567 13 VFRPYQKDVIQRIIE------K----RDCLVVMATGSGKSLCYQ-------LPPLVTGKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~------~----~~~l~~a~tGsGKT~~~~-------l~~~~~~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
++-|||..++.+++- + +.+++..|-+-|||..+. +....++..+.|++|+.+-+.+.+..++.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~ 140 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARD 140 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHH
Confidence 588999999999872 1 356899999999995432 11123688899999999999988887765
Q ss_pred cCCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHH
Q 037567 76 RGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKL 155 (374)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~ 155 (374)
.-.... ..............|...--........+........+..+.|+||.|.....+ ..++.+..-
T Consensus 141 mv~~~~-------~l~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~----~~~~~~~~g 209 (546)
T COG4626 141 MVKRDD-------DLRDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE----DMYSEAKGG 209 (546)
T ss_pred HHHhCc-------chhhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH----HHHHHHHhh
Confidence 411111 000000000000011111111111111222233344566799999999876532 222333333
Q ss_pred HHhcCCCCeeEEEe
Q 037567 156 RTFLLGVPFVALTA 169 (374)
Q Consensus 156 ~~~~~~~~~i~~Sa 169 (374)
....++..+++.|-
T Consensus 210 ~~ar~~~l~~~ITT 223 (546)
T COG4626 210 LGARPEGLVVYITT 223 (546)
T ss_pred hccCcCceEEEEec
Confidence 34445666777764
No 263
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.48 E-value=0.012 Score=50.23 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=14.4
Q ss_pred CCEEEEccCCCCchhhh
Q 037567 29 RDCLVVMATGSGKSLCY 45 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~ 45 (374)
.++++.||+|+|||..+
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 36799999999999664
No 264
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.48 E-value=0.022 Score=52.48 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=25.6
Q ss_pred CCEEEEccCCCCchhhhhcc---ccc--cCCcEEEEcchHHHHHHHHHHH
Q 037567 29 RDCLVVMATGSGKSLCYQLP---PLV--TGKTALVVSPLISLMQDQVMSL 73 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~---~~~--~~~~~lil~P~~~l~~q~~~~~ 73 (374)
+.+++.||+|+|||...... +.. .+.+++++.. ..+.++....+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~-~~f~~~~~~~~ 179 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS-EKFLNDLVDSM 179 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHH
Confidence 35899999999999543221 111 2446666654 34555444443
No 265
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.47 E-value=0.044 Score=58.32 Aligned_cols=58 Identities=16% Similarity=0.191 Sum_probs=43.9
Q ss_pred CCchhHHHHHHHHHcC--CCEEEEccCCCCchhhhh--ccccc-----cCCcEEEEcchHHHHHHHH
Q 037567 13 VFRPYQKDVIQRIIEK--RDCLVVMATGSGKSLCYQ--LPPLV-----TGKTALVVSPLISLMQDQV 70 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~--~~~l~~a~tGsGKT~~~~--l~~~~-----~~~~~lil~P~~~l~~q~~ 70 (374)
.+++.|.+++..++.+ +-++|.|.+|+|||.+.- ..++. .+.+++.++||..-+..+.
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~ 1033 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMR 1033 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHH
Confidence 5899999999999875 467899999999996532 22221 2467899999988877654
No 266
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=96.47 E-value=0.022 Score=55.28 Aligned_cols=88 Identities=17% Similarity=0.210 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHc----CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEec-cc
Q 037567 214 VDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQL----GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM-AF 288 (374)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~-~~ 288 (374)
....+..++.....+.++++.+|+..-+.+.++.+++. ++++..++|+++..++...++...+|+.+|+|+|+ .+
T Consensus 270 T~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll 349 (630)
T TIGR00643 270 TLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALI 349 (630)
T ss_pred HHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHH
Confidence 33344445555567889999999999999888877653 68899999999999999999999999999999998 44
Q ss_pred cccccccCccEEE
Q 037567 289 GMGIDKPDVRHVI 301 (374)
Q Consensus 289 ~~G~d~~~~~~vi 301 (374)
...+++.++.+||
T Consensus 350 ~~~~~~~~l~lvV 362 (630)
T TIGR00643 350 QEKVEFKRLALVI 362 (630)
T ss_pred hccccccccceEE
Confidence 4566777777766
No 267
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=96.47 E-value=0.021 Score=54.16 Aligned_cols=160 Identities=16% Similarity=0.084 Sum_probs=88.6
Q ss_pred CCchhHHHHHHHHHcC--CCEEEEccCCCCchhhhhcccc----ccCCcEEEEcchHHHHHHHHHH-HHHc---CCceE-
Q 037567 13 VFRPYQKDVIQRIIEK--RDCLVVMATGSGKSLCYQLPPL----VTGKTALVVSPLISLMQDQVMS-LKQR---GINAE- 81 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~--~~~l~~a~tGsGKT~~~~l~~~----~~~~~~lil~P~~~l~~q~~~~-~~~~---~~~~~- 81 (374)
..+|||.+.+.++... +.+.+..++-+|||.+.+..+. .....++++.||...+.++.+. +... .....
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l~~ 95 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMIRASPVLRR 95 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 5789999999998765 5778999999999986544333 2467899999999999987643 4332 00000
Q ss_pred EcCC---CCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhc-ccCcchHHHHHHHHHHH
Q 037567 82 FLGS---AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISE-WGHDFRLEYKQLDKLRT 157 (374)
Q Consensus 82 ~~~~---~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~-~~~~~~~~~~~~~~~~~ 157 (374)
.+.. .........+.-.+ -.+.+....+- ..+....++++++||++.+.. .+.+-.+.-....+...
T Consensus 96 ~~~~~~~~~~~~t~~~k~f~g-g~l~~~ga~S~--------~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~R~~t 166 (557)
T PF05876_consen 96 KLSPSKSRDSGNTILYKRFPG-GFLYLVGANSP--------SNLRSRPARYLLLDEVDRYPDDVGGEGDPVELAEKRTKT 166 (557)
T ss_pred HhCchhhcccCCchhheecCC-CEEEEEeCCCC--------cccccCCcCEEEEechhhccccCccCCCHHHHHHHHHhh
Confidence 1111 00111111111112 23444433322 223335678999999999853 12222222222233333
Q ss_pred hcCCCCeeEEEeecCcccHHHHHHh
Q 037567 158 FLLGVPFVALTATATEKVRIDIINS 182 (374)
Q Consensus 158 ~~~~~~~i~~SaT~~~~~~~~~~~~ 182 (374)
+ .....+++.+||.......+...
T Consensus 167 f-~~~~K~~~~STPt~~~~~~I~~~ 190 (557)
T PF05876_consen 167 F-GSNRKILRISTPTIEGTSRIERL 190 (557)
T ss_pred h-ccCcEEEEeCCCCCCCCCHHHHH
Confidence 3 24456666678877643334443
No 268
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.43 E-value=0.016 Score=53.60 Aligned_cols=45 Identities=13% Similarity=0.097 Sum_probs=27.5
Q ss_pred CCEEEEccCCCCchhhhhccc---c--ccCCcEEEEcchHHHHHHHHHHHH
Q 037567 29 RDCLVVMATGSGKSLCYQLPP---L--VTGKTALVVSPLISLMQDQVMSLK 74 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~~---~--~~~~~~lil~P~~~l~~q~~~~~~ 74 (374)
+.+++.|++|+|||....... . ..+.+++++.+ .++..+....+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~l~ 191 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG-DEFARKAVDILQ 191 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHHH
Confidence 457899999999994422111 1 23456666555 466666665554
No 269
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.43 E-value=0.014 Score=51.11 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=24.7
Q ss_pred CchhHHHHHHHHHc----C---CCEEEEccCCCCchhhh
Q 037567 14 FRPYQKDVIQRIIE----K---RDCLVVMATGSGKSLCY 45 (374)
Q Consensus 14 ~~~~Q~~~~~~~~~----~---~~~l~~a~tGsGKT~~~ 45 (374)
.+|+|...++.+.+ + +-.++.||.|.||+..+
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA 41 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLI 41 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHH
Confidence 57888888887764 2 34579999999999554
No 270
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.42 E-value=0.017 Score=52.93 Aligned_cols=42 Identities=19% Similarity=0.156 Sum_probs=24.3
Q ss_pred CEEEEccCCCCchhhhhcc---cccc--CCcEEEEcchHHHHHHHHHH
Q 037567 30 DCLVVMATGSGKSLCYQLP---PLVT--GKTALVVSPLISLMQDQVMS 72 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~l~---~~~~--~~~~lil~P~~~l~~q~~~~ 72 (374)
.+++.||+|+|||...... +... +.+++++.. ..+..+....
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~-~~~~~~~~~~ 184 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS-EKFTNDFVNA 184 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH-HHHHHHHHHH
Confidence 5789999999999643221 1122 456666643 3454444333
No 271
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.41 E-value=0.042 Score=45.92 Aligned_cols=51 Identities=20% Similarity=0.125 Sum_probs=34.5
Q ss_pred cCCCEEEEccCCCCchhhhh---ccccccCCcEEEEcchHHHHHHHHHHHHHcCC
Q 037567 27 EKRDCLVVMATGSGKSLCYQ---LPPLVTGKTALVVSPLISLMQDQVMSLKQRGI 78 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~~---l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 78 (374)
.+.-+++.+++|+|||.... ...+.++.++++++.. +-..+..+.+.++|.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e-~~~~~~~~~~~~~g~ 76 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ-LTTTEFIKQMMSLGY 76 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC-CCHHHHHHHHHHhCC
Confidence 46678999999999996632 2233467788888744 444566666666655
No 272
>PLN03025 replication factor C subunit; Provisional
Probab=96.40 E-value=0.011 Score=52.08 Aligned_cols=42 Identities=14% Similarity=0.180 Sum_probs=24.3
Q ss_pred CccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCeeEEEeecCc
Q 037567 126 GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATE 173 (374)
Q Consensus 126 ~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~ 173 (374)
...++++||+|.+..... ..+.+..+..++...+.++++...
T Consensus 99 ~~kviiiDE~d~lt~~aq------~aL~~~lE~~~~~t~~il~~n~~~ 140 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQ------QALRRTMEIYSNTTRFALACNTSS 140 (319)
T ss_pred CeEEEEEechhhcCHHHH------HHHHHHHhcccCCceEEEEeCCcc
Confidence 467999999999864221 334444444444444555555443
No 273
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.40 E-value=0.015 Score=48.54 Aligned_cols=18 Identities=33% Similarity=0.257 Sum_probs=15.1
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
+..+++.||+|+|||..+
T Consensus 38 ~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 457899999999999654
No 274
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.38 E-value=0.0054 Score=60.06 Aligned_cols=61 Identities=16% Similarity=0.256 Sum_probs=46.9
Q ss_pred CchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccc---c-c---cCCcEEEEcchHHHHHHHHHHHHHc
Q 037567 14 FRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPP---L-V---TGKTALVVSPLISLMQDQVMSLKQR 76 (374)
Q Consensus 14 ~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~---~-~---~~~~~lil~P~~~l~~q~~~~~~~~ 76 (374)
++|-|.+++.. ...+++|.|++|||||.+...-+ + . ...++++++.|+..+.++.+.+.+.
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~ 69 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKT 69 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 78889998864 46789999999999996543221 1 1 2467999999999999999988754
No 275
>PRK04195 replication factor C large subunit; Provisional
Probab=96.37 E-value=0.012 Score=55.13 Aligned_cols=32 Identities=19% Similarity=0.135 Sum_probs=20.6
Q ss_pred CCCEEEEccCCCCchhhhhccccccCCcEEEE
Q 037567 28 KRDCLVVMATGSGKSLCYQLPPLVTGKTALVV 59 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil 59 (374)
.+.+++.||+|+|||..+...+-.-+..++.+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~iel 70 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIEL 70 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 45789999999999976543333333344444
No 276
>CHL00176 ftsH cell division protein; Validated
Probab=96.37 E-value=0.039 Score=53.14 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=20.0
Q ss_pred CCEEEEccCCCCchhhhhccccccCCcEEEE
Q 037567 29 RDCLVVMATGSGKSLCYQLPPLVTGKTALVV 59 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil 59 (374)
+.+++.||+|+|||..+-..+-..+.+.+.+
T Consensus 217 ~gVLL~GPpGTGKT~LAralA~e~~~p~i~i 247 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAIAGEAEVPFFSI 247 (638)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 4689999999999976533333333344433
No 277
>PRK09183 transposase/IS protein; Provisional
Probab=96.33 E-value=0.015 Score=49.51 Aligned_cols=44 Identities=14% Similarity=0.164 Sum_probs=27.7
Q ss_pred HHcCCCEEEEccCCCCchhhhhcc---ccccCCcEEEEcchHHHHHHH
Q 037567 25 IIEKRDCLVVMATGSGKSLCYQLP---PLVTGKTALVVSPLISLMQDQ 69 (374)
Q Consensus 25 ~~~~~~~l~~a~tGsGKT~~~~l~---~~~~~~~~lil~P~~~l~~q~ 69 (374)
+.++.++++.||+|+|||..+... +...+.+++++. ..++..+.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~-~~~l~~~l 145 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT-AADLLLQL 145 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe-HHHHHHHH
Confidence 345778999999999999544322 223566676654 33455443
No 278
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.032 Score=51.04 Aligned_cols=73 Identities=14% Similarity=0.117 Sum_probs=40.3
Q ss_pred HHHhcCccEEEEeccchhhccc--C---cchHHHHHH-HHHHHhcCCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEe
Q 037567 121 KLLKAGVCLFAVDEAHCISEWG--H---DFRLEYKQL-DKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTIA 193 (374)
Q Consensus 121 ~~~~~~~~~vviDE~h~~~~~~--~---~~~~~~~~~-~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~ 193 (374)
........+|+|||.+.+...- . ..+..+.++ .++-.+-++..+|.+-||-.++.....+..-+.-+..+.++
T Consensus 391 aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp 469 (752)
T KOG0734|consen 391 AAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVP 469 (752)
T ss_pred HHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecC
Confidence 3334566789999999986411 1 112222222 22333334788999999988876544444333333333333
No 279
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.30 E-value=0.013 Score=51.18 Aligned_cols=35 Identities=26% Similarity=0.418 Sum_probs=27.7
Q ss_pred CCCCchhHHHHHHHHHc----CC---CEEEEccCCCCchhhh
Q 037567 11 YSVFRPYQKDVIQRIIE----KR---DCLVVMATGSGKSLCY 45 (374)
Q Consensus 11 ~~~~~~~Q~~~~~~~~~----~~---~~l~~a~tGsGKT~~~ 45 (374)
++.++|+|..++..+.+ ++ -.++.||.|+||+..+
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA 43 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVA 43 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH
Confidence 45789999999988764 22 4689999999999543
No 280
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.28 E-value=0.0034 Score=52.73 Aligned_cols=15 Identities=40% Similarity=0.359 Sum_probs=12.5
Q ss_pred EEEEccCCCCchhhh
Q 037567 31 CLVVMATGSGKSLCY 45 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~ 45 (374)
+++.|++|||||...
T Consensus 1 ~vv~G~pGsGKSt~i 15 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLI 15 (234)
T ss_pred CEEEcCCCCCHHHHH
Confidence 378999999999753
No 281
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.28 E-value=0.0091 Score=64.66 Aligned_cols=59 Identities=20% Similarity=0.170 Sum_probs=44.4
Q ss_pred CCCchhHHHHHHHHHcC--CCEEEEccCCCCchhhh------hccccc-cCCcEEEEcchHHHHHHHH
Q 037567 12 SVFRPYQKDVIQRIIEK--RDCLVVMATGSGKSLCY------QLPPLV-TGKTALVVSPLISLMQDQV 70 (374)
Q Consensus 12 ~~~~~~Q~~~~~~~~~~--~~~l~~a~tGsGKT~~~------~l~~~~-~~~~~lil~P~~~l~~q~~ 70 (374)
..+++.|.+|+..++.+ +-+++.|+.|+|||... +..+.. .+.+++.++||..-+.++.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHH
Confidence 36899999999998865 45578999999999764 111222 4678999999988777664
No 282
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.27 E-value=0.06 Score=45.16 Aligned_cols=59 Identities=20% Similarity=0.233 Sum_probs=38.7
Q ss_pred HHHHHHc-----CCCEEEEccCCCCchhhhhcc---ccccCCcEEEEcchHHHHHHHHHHHHHcCCce
Q 037567 21 VIQRIIE-----KRDCLVVMATGSGKSLCYQLP---PLVTGKTALVVSPLISLMQDQVMSLKQRGINA 80 (374)
Q Consensus 21 ~~~~~~~-----~~~~l~~a~tGsGKT~~~~l~---~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 80 (374)
.++.++. +.-+++.|++|+|||...... .+.++.+++++.-. +-..+..+.+.++|+..
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e-~~~~~~~~~~~~~g~~~ 79 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE-NTSKSYLKQMESVKIDI 79 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC-CCHHHHHHHHHHCCCCh
Confidence 4445544 456788999999999543322 23457778777765 44567777788877553
No 283
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.26 E-value=0.045 Score=53.46 Aligned_cols=85 Identities=15% Similarity=0.179 Sum_probs=66.7
Q ss_pred HHHHHHhhcCCCcEEEEecchhHHHHHHHHHHH-cCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccC
Q 037567 218 VQEILKSVAGAGSIIVYCMTIKDVEEISKALKQ-LGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296 (374)
Q Consensus 218 ~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~ 296 (374)
+..+......++++||.+|+...+.++.+.|++ .+..+..+||+++..++.........|+.+|+|+|...- -..+.+
T Consensus 180 l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~ 258 (679)
T PRK05580 180 LQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKN 258 (679)
T ss_pred HHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccC
Confidence 333444445678999999999999999999987 477899999999999999888888899999999998432 134556
Q ss_pred ccEEEEE
Q 037567 297 VRHVIHY 303 (374)
Q Consensus 297 ~~~vi~~ 303 (374)
+..||.-
T Consensus 259 l~liVvD 265 (679)
T PRK05580 259 LGLIIVD 265 (679)
T ss_pred CCEEEEE
Confidence 6766643
No 284
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.26 E-value=0.0078 Score=50.62 Aligned_cols=59 Identities=20% Similarity=0.228 Sum_probs=40.2
Q ss_pred HHHHHHHc-----CCCEEEEccCCCCchhhhh---ccccccCCcEEEEcchHHHHHHHHHHHHHcCCc
Q 037567 20 DVIQRIIE-----KRDCLVVMATGSGKSLCYQ---LPPLVTGKTALVVSPLISLMQDQVMSLKQRGIN 79 (374)
Q Consensus 20 ~~~~~~~~-----~~~~l~~a~tGsGKT~~~~---l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 79 (374)
..++.++. +..+++.||+|+|||..++ ...+..+.++++++- .+-..+..+.+..+|..
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~-ee~~~~i~~~~~~~g~~ 74 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL-EEHPVQVRRNMAQFGWD 74 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe-eCCHHHHHHHHHHhCCC
Confidence 34455544 5677999999999996543 223346778888874 45667777777777654
No 285
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.25 E-value=0.0034 Score=58.63 Aligned_cols=36 Identities=22% Similarity=0.276 Sum_probs=29.8
Q ss_pred CCchhHHHHHHHHHc----CCCEEEEccCCCCchhhhhcc
Q 037567 13 VFRPYQKDVIQRIIE----KRDCLVVMATGSGKSLCYQLP 48 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~----~~~~l~~a~tGsGKT~~~~l~ 48 (374)
+|+.+|.+.+..+++ |+-.|+..|||+|||++.+.+
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCa 54 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICA 54 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHH
Confidence 589999998887764 888899999999999775433
No 286
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=96.25 E-value=0.0059 Score=51.62 Aligned_cols=36 Identities=25% Similarity=0.357 Sum_probs=24.2
Q ss_pred EEEEccCCCCchhhh--hcc--ccc-cCCcEEEEcchHHHH
Q 037567 31 CLVVMATGSGKSLCY--QLP--PLV-TGKTALVVSPLISLM 66 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~--~l~--~~~-~~~~~lil~P~~~l~ 66 (374)
.+|.||||+||+-.. ++. ++. ..-.|++++|.+..+
T Consensus 90 ~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mI 130 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMI 130 (369)
T ss_pred EEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCC
Confidence 378999999999421 111 122 245799999988665
No 287
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.24 E-value=0.0058 Score=59.55 Aligned_cols=62 Identities=18% Similarity=0.214 Sum_probs=47.2
Q ss_pred CCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccc---cc----cCCcEEEEcchHHHHHHHHHHHHHc
Q 037567 13 VFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPP---LV----TGKTALVVSPLISLMQDQVMSLKQR 76 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~---~~----~~~~~lil~P~~~l~~q~~~~~~~~ 76 (374)
.+++-|.+++.. ....++|.|++|||||.+...-+ +. ...++|+++.|+..+.++.+.+.+.
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHH
Confidence 478899999875 45788999999999996533211 11 2457999999999999998888653
No 288
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.23 E-value=0.018 Score=53.33 Aligned_cols=19 Identities=37% Similarity=0.697 Sum_probs=15.3
Q ss_pred CCEEEEccCCCCchhhhhc
Q 037567 29 RDCLVVMATGSGKSLCYQL 47 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l 47 (374)
+..++.||.|+|||.++.+
T Consensus 36 ha~Lf~Gp~G~GKTT~Ari 54 (491)
T PRK14964 36 QSILLVGASGVGKTTCARI 54 (491)
T ss_pred ceEEEECCCCccHHHHHHH
Confidence 3579999999999976543
No 289
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.22 E-value=0.017 Score=50.96 Aligned_cols=33 Identities=12% Similarity=0.282 Sum_probs=25.8
Q ss_pred CCchhHHHHHHHHHc----C---CCEEEEccCCCCchhhh
Q 037567 13 VFRPYQKDVIQRIIE----K---RDCLVVMATGSGKSLCY 45 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~----~---~~~l~~a~tGsGKT~~~ 45 (374)
.++|||...+..+.+ + +-.++.||.|.||+..+
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA 41 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHH
Confidence 368999999988764 2 24589999999999553
No 290
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=96.22 E-value=0.037 Score=55.67 Aligned_cols=90 Identities=13% Similarity=0.139 Sum_probs=71.2
Q ss_pred chHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHc----CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEec-
Q 037567 212 SFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQL----GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM- 286 (374)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~- 286 (374)
.+....+..++.....+.+++|.+|+..-+.+.++.+++. ++++..++|..+..++.++++.+..|+.+|+|+|+
T Consensus 484 GKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ 563 (926)
T TIGR00580 484 GKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHK 563 (926)
T ss_pred cHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH
Confidence 3344444445555567789999999999999999888763 56778899999999999999999999999999998
Q ss_pred cccccccccCccEEE
Q 037567 287 AFGMGIDKPDVRHVI 301 (374)
Q Consensus 287 ~~~~G~d~~~~~~vi 301 (374)
.+...+.+.++.++|
T Consensus 564 ll~~~v~f~~L~llV 578 (926)
T TIGR00580 564 LLQKDVKFKDLGLLI 578 (926)
T ss_pred HhhCCCCcccCCEEE
Confidence 444566777777766
No 291
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.21 E-value=0.011 Score=56.84 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=23.7
Q ss_pred cCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCeeEEEeecC
Q 037567 125 AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATAT 172 (374)
Q Consensus 125 ~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 172 (374)
..++++||||+|.+..... ..+.+.++..+..-.+.|+.|-.
T Consensus 118 gr~KVIIIDEah~LT~~A~------NALLKtLEEPP~~v~FILaTtd~ 159 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAF------NAMLKTLEEPPPHVKFILATTDP 159 (830)
T ss_pred CCceEEEEeChhhCCHHHH------HHHHHHHHhcCCCeEEEEEECCh
Confidence 3578999999999865321 33344444433333444444433
No 292
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.21 E-value=0.048 Score=49.47 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=21.3
Q ss_pred CCCEEEEccCCCCchhhhhccccccCCcEEEEc
Q 037567 28 KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~ 60 (374)
.+.+++.||+|+|||..+-..+-......+-+.
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~ 211 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVV 211 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCEEEEe
Confidence 467899999999999765433333333344443
No 293
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.21 E-value=0.045 Score=45.39 Aligned_cols=42 Identities=19% Similarity=0.323 Sum_probs=25.8
Q ss_pred CCCEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHH
Q 037567 28 KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQV 70 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~ 70 (374)
-+++++.+|||+|||..+-..+ ...+.-++.+...+|+-+..
T Consensus 151 PknVLFyGppGTGKTm~Akala-ne~kvp~l~vkat~liGehV 192 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAKALA-NEAKVPLLLVKATELIGEHV 192 (368)
T ss_pred cceeEEECCCCccHHHHHHHHh-cccCCceEEechHHHHHHHh
Confidence 4799999999999997542222 22333345555555655443
No 294
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.21 E-value=0.074 Score=48.71 Aligned_cols=126 Identities=17% Similarity=0.119 Sum_probs=63.4
Q ss_pred CCCEEEEccCCCCchhhhh-ccc-c---ccCCcEEEEc-ch-HH-HHHHHHHHHHHcCCceEEcCCCCCchhhhhhhhcC
Q 037567 28 KRDCLVVMATGSGKSLCYQ-LPP-L---VTGKTALVVS-PL-IS-LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETG 99 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~-l~~-~---~~~~~~lil~-P~-~~-l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (374)
++.+++.+|||+|||.+.. ++. + ..+.++.++. .+ +. ...|+..+....++.....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~---------------- 284 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVV---------------- 284 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEcc----------------
Confidence 4567889999999996543 221 1 2344555443 22 22 3344444444444332211
Q ss_pred CeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHH-h-cCCCCeeEEEeecCcccHH
Q 037567 100 YFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRT-F-LLGVPFVALTATATEKVRI 177 (374)
Q Consensus 100 ~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~SaT~~~~~~~ 177 (374)
.+++.+... .. ...+.++|+||.+-+... + ......+..+.. . .+....+.+|||.......
T Consensus 285 ------~~~~~l~~~----l~--~~~~~DlVlIDt~G~~~~---d-~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~ 348 (424)
T PRK05703 285 ------YDPKELAKA----LE--QLRDCDVILIDTAGRSQR---D-KRLIEELKALIEFSGEPIDVYLVLSATTKYEDLK 348 (424)
T ss_pred ------CCHHhHHHH----HH--HhCCCCEEEEeCCCCCCC---C-HHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHH
Confidence 122211111 11 234679999999865321 1 111123333333 1 1223478899998887776
Q ss_pred HHHHhcCC
Q 037567 178 DIINSLKL 185 (374)
Q Consensus 178 ~~~~~~~~ 185 (374)
.+...+..
T Consensus 349 ~~~~~f~~ 356 (424)
T PRK05703 349 DIYKHFSR 356 (424)
T ss_pred HHHHHhCC
Confidence 66666543
No 295
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.19 E-value=0.046 Score=51.36 Aligned_cols=81 Identities=20% Similarity=0.214 Sum_probs=64.6
Q ss_pred HHHhhcCCCcEEEEecchhHHHHHHHHHHHc-CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccE
Q 037567 221 ILKSVAGAGSIIVYCMTIKDVEEISKALKQL-GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299 (374)
Q Consensus 221 ~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~ 299 (374)
+......+++++|.+|+...+.++++.|++. +..+..+||+++..+|.....+...|+.+|+|+|...-. ..++++..
T Consensus 18 i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~l 96 (505)
T TIGR00595 18 IEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGL 96 (505)
T ss_pred HHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCE
Confidence 3334456789999999999999999999864 677889999999999999888888999999999974322 34556676
Q ss_pred EEE
Q 037567 300 VIH 302 (374)
Q Consensus 300 vi~ 302 (374)
||.
T Consensus 97 IIV 99 (505)
T TIGR00595 97 IIV 99 (505)
T ss_pred EEE
Confidence 663
No 296
>PRK06620 hypothetical protein; Validated
Probab=96.18 E-value=0.015 Score=47.88 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=14.0
Q ss_pred CCEEEEccCCCCchhhh
Q 037567 29 RDCLVVMATGSGKSLCY 45 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~ 45 (374)
+.++++||+|+|||...
T Consensus 45 ~~l~l~Gp~G~GKThLl 61 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLT 61 (214)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 34799999999999653
No 297
>PRK04328 hypothetical protein; Provisional
Probab=96.18 E-value=0.012 Score=49.82 Aligned_cols=58 Identities=22% Similarity=0.267 Sum_probs=38.3
Q ss_pred HHHHHHc-----CCCEEEEccCCCCchhhhh---ccccccCCcEEEEcchHHHHHHHHHHHHHcCCc
Q 037567 21 VIQRIIE-----KRDCLVVMATGSGKSLCYQ---LPPLVTGKTALVVSPLISLMQDQVMSLKQRGIN 79 (374)
Q Consensus 21 ~~~~~~~-----~~~~l~~a~tGsGKT~~~~---l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 79 (374)
.++.++. +..+++.|++|+|||...+ ...+.++.+++++. +.+-..+..+.++.+|..
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis-~ee~~~~i~~~~~~~g~d 76 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA-LEEHPVQVRRNMRQFGWD 76 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE-eeCCHHHHHHHHHHcCCC
Confidence 4455543 5667899999999995433 22344577787776 445566677777777654
No 298
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.18 E-value=0.016 Score=51.16 Aligned_cols=13 Identities=23% Similarity=0.325 Sum_probs=11.1
Q ss_pred CccEEEEeccchh
Q 037567 126 GVCLFAVDEAHCI 138 (374)
Q Consensus 126 ~~~~vviDE~h~~ 138 (374)
..+++|+||+|.+
T Consensus 100 ~~~vliiDe~d~l 112 (316)
T PHA02544 100 GGKVIIIDEFDRL 112 (316)
T ss_pred CCeEEEEECcccc
Confidence 4579999999987
No 299
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.16 E-value=0.016 Score=60.75 Aligned_cols=58 Identities=16% Similarity=0.190 Sum_probs=44.4
Q ss_pred CCchhHHHHHHHHHcC--CCEEEEccCCCCchhhh--hcccc-----ccCCcEEEEcchHHHHHHHH
Q 037567 13 VFRPYQKDVIQRIIEK--RDCLVVMATGSGKSLCY--QLPPL-----VTGKTALVVSPLISLMQDQV 70 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~--~~~l~~a~tGsGKT~~~--~l~~~-----~~~~~~lil~P~~~l~~q~~ 70 (374)
.+++-|.+++..++.. +-+++.|..|+|||.+. ++.++ ..+..++.++||..-+..+.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHH
Confidence 6899999999999864 66789999999999763 12221 13567889999988887664
No 300
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.15 E-value=0.02 Score=56.72 Aligned_cols=16 Identities=31% Similarity=0.588 Sum_probs=13.8
Q ss_pred cCccEEEEeccchhhc
Q 037567 125 AGVCLFAVDEAHCISE 140 (374)
Q Consensus 125 ~~~~~vviDE~h~~~~ 140 (374)
..++++||||+|.|..
T Consensus 119 ~~~KV~IIDEad~lt~ 134 (824)
T PRK07764 119 SRYKIFIIDEAHMVTP 134 (824)
T ss_pred CCceEEEEechhhcCH
Confidence 5678999999999975
No 301
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.15 E-value=0.039 Score=49.21 Aligned_cols=124 Identities=11% Similarity=0.007 Sum_probs=60.9
Q ss_pred CCCEEEEccCCCCchhhhhcccc----ccC-CcEEEEcc-hH--HHHHHHHHHHHHcCCceEEcCCCCCchhhhhhhhcC
Q 037567 28 KRDCLVVMATGSGKSLCYQLPPL----VTG-KTALVVSP-LI--SLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETG 99 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~~----~~~-~~~lil~P-~~--~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (374)
+..+++.||||+|||.+....+. ..+ .++.++.. +- .-.+|.....+.+|......
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~---------------- 200 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAV---------------- 200 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEec----------------
Confidence 45678999999999976543321 223 34444432 21 12344444444444433222
Q ss_pred CeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhc-CCCCeeEEEeecCcccHHH
Q 037567 100 YFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFL-LGVPFVALTATATEKVRID 178 (374)
Q Consensus 100 ~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~SaT~~~~~~~~ 178 (374)
-+++.+.. ......+.++|+||++-.... .......+..+.... +...++.+|||........
T Consensus 201 ------~~~~~l~~------~l~~l~~~DlVLIDTaG~~~~----d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~e 264 (374)
T PRK14722 201 ------KDGGDLQL------ALAELRNKHMVLIDTIGMSQR----DRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNE 264 (374)
T ss_pred ------CCcccHHH------HHHHhcCCCEEEEcCCCCCcc----cHHHHHHHHHHhccCCCCeEEEEecCccChHHHHH
Confidence 22222211 112235668999999964321 111112233332211 1234788999988776554
Q ss_pred HHHhc
Q 037567 179 IINSL 183 (374)
Q Consensus 179 ~~~~~ 183 (374)
+...+
T Consensus 265 vi~~f 269 (374)
T PRK14722 265 VVQAY 269 (374)
T ss_pred HHHHH
Confidence 44433
No 302
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=96.15 E-value=0.057 Score=50.49 Aligned_cols=156 Identities=13% Similarity=0.109 Sum_probs=91.5
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCch--hhhhcccc---ccCCcEEEEcchHHHHHHHHHHHHH-
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKS--LCYQLPPL---VTGKTALVVSPLISLMQDQVMSLKQ- 75 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT--~~~~l~~~---~~~~~~lil~P~~~l~~q~~~~~~~- 75 (374)
.+.|+..||...+.. ..++. ++.+-.+..-|---||| +..+++++ -.+-++-+++..+..++-+++++..
T Consensus 180 ~~~lk~~Fdi~~~s~---~~l~~-FKQkaTVFLVPRRHGKTWf~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~ 255 (668)
T PHA03372 180 LEYLLHVFDIEFLSE---SSLNI-FKQKATVFLVPRRHGKTWFIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFR 255 (668)
T ss_pred HHHHHHHcCCcccCH---HHHHH-hhccceEEEecccCCceehHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHH
Confidence 356788888876665 44444 34455566669999999 22222222 2578899999999888877777652
Q ss_pred ---cCCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCc---hhhHHHHHhcCccEEEEeccchhhcccCcchHHH
Q 037567 76 ---RGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIP---ISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEY 149 (374)
Q Consensus 76 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~---~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~ 149 (374)
+-....+... .+-.|.+.-|+.=...+ -...+.+..+.+++++|||||.+..
T Consensus 256 lrrwF~~~~vi~~-------------k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~~--------- 313 (668)
T PHA03372 256 CRRMFPRKHTIEN-------------KDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIKK--------- 313 (668)
T ss_pred HhhhcCccceeee-------------cCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccCH---------
Confidence 2111111100 00123333332110000 0112345567899999999998865
Q ss_pred HHHHHHHHhc--CCCCeeEEEeecCcccHHHHHHhc
Q 037567 150 KQLDKLRTFL--LGVPFVALTATATEKVRIDIINSL 183 (374)
Q Consensus 150 ~~~~~~~~~~--~~~~~i~~SaT~~~~~~~~~~~~~ 183 (374)
..+..+..++ .+.++|+.|.|-+......++..+
T Consensus 314 ~a~~tilgfm~q~~~KiIfISS~Nsg~~sTSfL~~L 349 (668)
T PHA03372 314 DAFNTILGFLAQNTTKIIFISSTNTTNDATCFLTKL 349 (668)
T ss_pred HHHHHhhhhhcccCceEEEEeCCCCCCccchHHHhc
Confidence 3344444443 378999999997776665556555
No 303
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.15 E-value=0.015 Score=53.97 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=13.6
Q ss_pred EEEEccCCCCchhhhh
Q 037567 31 CLVVMATGSGKSLCYQ 46 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~~ 46 (374)
++++||+|+|||..+.
T Consensus 39 ~Lf~GPpGtGKTTlA~ 54 (472)
T PRK14962 39 YIFAGPRGTGKTTVAR 54 (472)
T ss_pred EEEECCCCCCHHHHHH
Confidence 6899999999997654
No 304
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.14 E-value=0.026 Score=52.97 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=14.0
Q ss_pred CEEEEccCCCCchhhhh
Q 037567 30 DCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~ 46 (374)
-.++.||+|+|||.++.
T Consensus 40 a~Lf~Gp~G~GKTt~A~ 56 (509)
T PRK14958 40 AYLFTGTRGVGKTTISR 56 (509)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 35899999999996653
No 305
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.12 E-value=0.019 Score=50.68 Aligned_cols=32 Identities=25% Similarity=0.251 Sum_probs=25.7
Q ss_pred CchhHHHHHHHHHcC-----CCEEEEccCCCCchhhh
Q 037567 14 FRPYQKDVIQRIIEK-----RDCLVVMATGSGKSLCY 45 (374)
Q Consensus 14 ~~~~Q~~~~~~~~~~-----~~~l~~a~tGsGKT~~~ 45 (374)
++|+|...+..+.+. +..++.||.|.||+..+
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA 38 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFA 38 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHH
Confidence 579999999988752 35689999999999553
No 306
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.12 E-value=0.012 Score=55.83 Aligned_cols=16 Identities=19% Similarity=0.517 Sum_probs=13.6
Q ss_pred cCccEEEEeccchhhc
Q 037567 125 AGVCLFAVDEAHCISE 140 (374)
Q Consensus 125 ~~~~~vviDE~h~~~~ 140 (374)
.+++++||||+|.+..
T Consensus 123 gr~KViIIDEah~Ls~ 138 (700)
T PRK12323 123 GRFKVYMIDEVHMLTN 138 (700)
T ss_pred CCceEEEEEChHhcCH
Confidence 4578999999999865
No 307
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.11 E-value=0.015 Score=57.14 Aligned_cols=16 Identities=25% Similarity=0.274 Sum_probs=13.4
Q ss_pred EEEEccCCCCchhhhh
Q 037567 31 CLVVMATGSGKSLCYQ 46 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~~ 46 (374)
+|+.||+|+|||.++.
T Consensus 41 yLFtGPpGtGKTTLAR 56 (944)
T PRK14949 41 YLFTGTRGVGKTSLAR 56 (944)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4899999999997653
No 308
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.10 E-value=0.015 Score=55.19 Aligned_cols=42 Identities=17% Similarity=0.095 Sum_probs=24.1
Q ss_pred cCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCeeEEEeecC
Q 037567 125 AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATAT 172 (374)
Q Consensus 125 ~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 172 (374)
...+++||||+|.+..... ..+.+..+..++.-.+.+++|-.
T Consensus 117 gk~KV~IIDEVh~LS~~A~------NALLKtLEEPP~~v~FILaTtd~ 158 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSF------NALLKTLEEPPEHVKFLFATTDP 158 (702)
T ss_pred CCcEEEEEechHhcCHHHH------HHHHHHHhcCCCCcEEEEEECCh
Confidence 4568999999999865321 34444444444333444444533
No 309
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.09 E-value=0.025 Score=55.92 Aligned_cols=18 Identities=33% Similarity=0.386 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
..+.++.||+|+|||...
T Consensus 203 ~~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CCceEEECCCCCCHHHHH
Confidence 458899999999999654
No 310
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.07 E-value=0.11 Score=40.83 Aligned_cols=50 Identities=18% Similarity=0.102 Sum_probs=28.5
Q ss_pred cCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCeeEEEeecCcccHHHHH
Q 037567 125 AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180 (374)
Q Consensus 125 ~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~ 180 (374)
...+++||||+|.+..... ..+.+..+..+..-+++|+++-.....+.+.
T Consensus 101 ~~~KviiI~~ad~l~~~a~------NaLLK~LEepp~~~~fiL~t~~~~~il~TI~ 150 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEAQ------NALLKTLEEPPENTYFILITNNPSKILPTIR 150 (162)
T ss_dssp SSSEEEEEETGGGS-HHHH------HHHHHHHHSTTTTEEEEEEES-GGGS-HHHH
T ss_pred CCceEEEeehHhhhhHHHH------HHHHHHhcCCCCCEEEEEEECChHHChHHHH
Confidence 4578999999999865222 4555566655544455555554444444333
No 311
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.033 Score=52.54 Aligned_cols=45 Identities=20% Similarity=0.216 Sum_probs=31.2
Q ss_pred CCEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHH
Q 037567 29 RDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLK 74 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~ 74 (374)
+.+++.||+|+|||+.+-..+...+.+++-+-.. ++...|.-+..
T Consensus 277 ~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~-~l~sk~vGese 321 (494)
T COG0464 277 KGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS-ELLSKWVGESE 321 (494)
T ss_pred CeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-HHhccccchHH
Confidence 4689999999999987665555555665555555 67766555533
No 312
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.01 E-value=0.043 Score=52.02 Aligned_cols=43 Identities=16% Similarity=0.151 Sum_probs=25.4
Q ss_pred CEEEEccCCCCchhhhhc-c--ccc--cCCcEEEEcchHHHHHHHHHHH
Q 037567 30 DCLVVMATGSGKSLCYQL-P--PLV--TGKTALVVSPLISLMQDQVMSL 73 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~l-~--~~~--~~~~~lil~P~~~l~~q~~~~~ 73 (374)
.++++|++|+|||..... . +.. .+.+++++. ..++.++....+
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-aeef~~el~~al 363 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-SEEFTNEFINSI 363 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-HHHHHHHHHHHH
Confidence 478999999999953221 1 111 245565554 456666655444
No 313
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.99 E-value=0.034 Score=52.63 Aligned_cols=17 Identities=18% Similarity=0.196 Sum_probs=14.1
Q ss_pred CEEEEccCCCCchhhhh
Q 037567 30 DCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~ 46 (374)
..++.||.|+|||..+.
T Consensus 40 A~Lf~GP~GvGKTTlA~ 56 (605)
T PRK05896 40 AYIFSGPRGIGKTSIAK 56 (605)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 46899999999996653
No 314
>PRK05973 replicative DNA helicase; Provisional
Probab=95.98 E-value=0.05 Score=45.34 Aligned_cols=55 Identities=20% Similarity=0.213 Sum_probs=37.1
Q ss_pred HHHcCCCEEEEccCCCCchhhhh---ccccccCCcEEEEcchHHHHHHHHHHHHHcCCc
Q 037567 24 RIIEKRDCLVVMATGSGKSLCYQ---LPPLVTGKTALVVSPLISLMQDQVMSLKQRGIN 79 (374)
Q Consensus 24 ~~~~~~~~l~~a~tGsGKT~~~~---l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 79 (374)
.+..|.-++|.|+||+|||...+ ..+..++.++++++-- +-.+|..+.+..+|+.
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE-es~~~i~~R~~s~g~d 117 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE-YTEQDVRDRLRALGAD 117 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe-CCHHHHHHHHHHcCCC
Confidence 34445677899999999996543 2233457778888654 3467777788777643
No 315
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.95 E-value=0.025 Score=47.27 Aligned_cols=17 Identities=29% Similarity=0.258 Sum_probs=14.3
Q ss_pred CCCEEEEccCCCCchhh
Q 037567 28 KRDCLVVMATGSGKSLC 44 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~ 44 (374)
+..+++.|++|+|||..
T Consensus 42 ~~~~~l~G~~G~GKT~L 58 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHL 58 (227)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 35689999999999954
No 316
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.93 E-value=0.034 Score=47.42 Aligned_cols=52 Identities=17% Similarity=0.131 Sum_probs=31.7
Q ss_pred CCCEEEEccCCCCchhhhhc---cccccCCcEEEEcch---HHHHHHHHHHHHHcCCc
Q 037567 28 KRDCLVVMATGSGKSLCYQL---PPLVTGKTALVVSPL---ISLMQDQVMSLKQRGIN 79 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l---~~~~~~~~~lil~P~---~~l~~q~~~~~~~~~~~ 79 (374)
+.-+++.|++|+|||...+- ..+.++.+++++.-- ..+..+..+....+|..
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~~l~~~a~~~g~d 93 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYTSLKERAKAMGVD 93 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHHHHHHHHHHcCCC
Confidence 45678999999999954332 223456788887732 23344454445555443
No 317
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.89 E-value=0.087 Score=47.70 Aligned_cols=50 Identities=18% Similarity=0.063 Sum_probs=28.6
Q ss_pred cCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCeeEEEeecCcccHHHHH
Q 037567 125 AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII 180 (374)
Q Consensus 125 ~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~ 180 (374)
.+..++||||+|.+..... ..+.+..+..++..++.+++|-+....+.+.
T Consensus 116 ~~~kViiIDead~m~~~aa------naLLk~LEep~~~~~fIL~a~~~~~llpTIr 165 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAA------NALLKAVEEPPPRTVWLLCAPSPEDVLPTIR 165 (394)
T ss_pred CCcEEEEEechhhcCHHHH------HHHHHHhhcCCCCCeEEEEECChHHChHHHH
Confidence 3567999999999965221 3334444444445556666665444443333
No 318
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.89 E-value=0.085 Score=51.08 Aligned_cols=89 Identities=19% Similarity=0.243 Sum_probs=69.2
Q ss_pred chHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHc-C-CceeeeecCCChHHHHHHHHhhhcCCeeEEEEecccc
Q 037567 212 SFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQL-G-VKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFG 289 (374)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~-~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~ 289 (374)
.+.+-++..+.+.+..++++||.+|.......+.+.|++. + ..+..+|+++++.+|.+......+|+.+|+|.|-++-
T Consensus 172 GKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv 251 (665)
T PRK14873 172 DWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV 251 (665)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE
Confidence 3344444445555567889999999999999999999875 3 5689999999999999999999999999999997532
Q ss_pred ccccccCccEEE
Q 037567 290 MGIDKPDVRHVI 301 (374)
Q Consensus 290 ~G~d~~~~~~vi 301 (374)
-.-+++...||
T Consensus 252 -FaP~~~LgLII 262 (665)
T PRK14873 252 -FAPVEDLGLVA 262 (665)
T ss_pred -EeccCCCCEEE
Confidence 22334555555
No 319
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.86 E-value=0.038 Score=54.73 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=21.3
Q ss_pred CCEEEEccCCCCchhhhhccccccCCcEEEEcc
Q 037567 29 RDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P 61 (374)
+.+++.||+|+|||..+-..+-..+...+.+-+
T Consensus 488 ~giLL~GppGtGKT~lakalA~e~~~~fi~v~~ 520 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLAKAVATESGANFIAVRG 520 (733)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhcCCCEEEEeh
Confidence 468999999999997654433333444444433
No 320
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.84 E-value=0.062 Score=48.28 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=26.2
Q ss_pred CccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCeeEEEeecCc
Q 037567 126 GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATE 173 (374)
Q Consensus 126 ~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~ 173 (374)
++++++||+++.+..........+..++.+... +.++++.|..++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~--~kqIvltsdr~P~ 220 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLEN--GKQIVLTSDRPPK 220 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhc--CCEEEEEcCCCch
Confidence 778999999999865432233334455555442 2344444444443
No 321
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=95.83 E-value=0.09 Score=47.75 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=15.6
Q ss_pred CCEEEEccCCCCchhhhhc
Q 037567 29 RDCLVVMATGSGKSLCYQL 47 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l 47 (374)
+.+++.||+|+|||..+-.
T Consensus 166 ~gvLL~GppGtGKT~lAka 184 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAKA 184 (389)
T ss_pred CceEEECCCCCChHHHHHH
Confidence 5689999999999976433
No 322
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.75 E-value=0.011 Score=53.26 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=19.7
Q ss_pred hHHHHHHHHHc----C---CCEEEEccCCCCchhhhh
Q 037567 17 YQKDVIQRIIE----K---RDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 17 ~Q~~~~~~~~~----~---~~~l~~a~tGsGKT~~~~ 46 (374)
.|..+...+.+ + +.+++.||+|+|||..+.
T Consensus 20 Gq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~ 56 (363)
T PRK14961 20 GQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIAR 56 (363)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHH
Confidence 45565554332 2 235899999999996643
No 323
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.74 E-value=0.054 Score=53.28 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
..+.++.||+|+|||...
T Consensus 207 ~~n~LLvGppGvGKT~la 224 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 458899999999999763
No 324
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.73 E-value=0.062 Score=50.63 Aligned_cols=18 Identities=33% Similarity=0.558 Sum_probs=15.2
Q ss_pred CCEEEEccCCCCchhhhh
Q 037567 29 RDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~ 46 (374)
+.+++.||+|+|||...-
T Consensus 89 ~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 478999999999997643
No 325
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.73 E-value=0.086 Score=48.72 Aligned_cols=88 Identities=15% Similarity=0.155 Sum_probs=52.1
Q ss_pred CCCEEEEccCCCCchhhhhccc---cccCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhhhhhhhcCCeeEE
Q 037567 28 KRDCLVVMATGSGKSLCYQLPP---LVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLL 104 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~---~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 104 (374)
+.-+++.+++|+|||...+..+ ..++.+++++.-. +...|......+++.... ++.
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~E-es~~qi~~ra~rlg~~~~--------------------~l~ 138 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGE-ESASQIKLRAERLGLPSD--------------------NLY 138 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc-ccHHHHHHHHHHcCCChh--------------------cEE
Confidence 3456899999999996433221 2346788888754 455677766666654311 122
Q ss_pred EEcCcccccCchhhHHHHHhcCccEEEEeccchhhc
Q 037567 105 FMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISE 140 (374)
Q Consensus 105 i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~ 140 (374)
+.....+. .....+...+.++||||+++.+..
T Consensus 139 ~~~e~~l~----~i~~~i~~~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 139 LLAETNLE----AILATIEEEKPDLVVIDSIQTMYS 170 (446)
T ss_pred EeCCCCHH----HHHHHHHhhCCCEEEEechhhhcc
Confidence 32222221 222333335788999999998754
No 326
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=95.73 E-value=0.018 Score=52.27 Aligned_cols=56 Identities=20% Similarity=0.235 Sum_probs=43.6
Q ss_pred CEEEEccCCCCchhhhhccccc-cCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCC
Q 037567 30 DCLVVMATGSGKSLCYQLPPLV-TGKTALVVSPLISLMQDQVMSLKQRGINAEFLGS 85 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~l~~~~-~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~ 85 (374)
++++.||||||||.++.+|.+. -...++|+=|.-++........+..|..+.++..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~~~s~vv~D~Kge~~~~t~~~r~~~G~~V~v~nP 57 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTWPGSVVVLDPKGENFELTSEHRRALGRKVFVFDP 57 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcCCCCEEEEccchhHHHHHHHHHHHcCCeEEEEcC
Confidence 4689999999999988877554 3567888888889998887777777766665543
No 327
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.72 E-value=0.021 Score=54.65 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=13.7
Q ss_pred cCccEEEEeccchhhc
Q 037567 125 AGVCLFAVDEAHCISE 140 (374)
Q Consensus 125 ~~~~~vviDE~h~~~~ 140 (374)
..+.++||||+|.+..
T Consensus 118 g~~KV~IIDEah~Ls~ 133 (647)
T PRK07994 118 GRFKVYLIDEVHMLSR 133 (647)
T ss_pred CCCEEEEEechHhCCH
Confidence 4678999999999875
No 328
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.68 E-value=0.053 Score=51.55 Aligned_cols=16 Identities=38% Similarity=0.615 Sum_probs=13.6
Q ss_pred cCccEEEEeccchhhc
Q 037567 125 AGVCLFAVDEAHCISE 140 (374)
Q Consensus 125 ~~~~~vviDE~h~~~~ 140 (374)
...+++||||+|.+..
T Consensus 117 ~~~KVvIIDEah~Lt~ 132 (584)
T PRK14952 117 SRYRIFIVDEAHMVTT 132 (584)
T ss_pred CCceEEEEECCCcCCH
Confidence 4678999999999865
No 329
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.65 E-value=0.017 Score=56.15 Aligned_cols=62 Identities=18% Similarity=0.220 Sum_probs=47.5
Q ss_pred CCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccc---c----ccCCcEEEEcchHHHHHHHHHHHHH
Q 037567 12 SVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPP---L----VTGKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 12 ~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~---~----~~~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
..+++-|.+++.. ...+++|.|.+|||||.+...-+ + ....++|+++.++..++.+.+.+..
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~ 263 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRE 263 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 3699999998863 34678999999999996643222 1 1356899999999999998888764
No 330
>CHL00181 cbbX CbbX; Provisional
Probab=95.63 E-value=0.067 Score=46.29 Aligned_cols=18 Identities=17% Similarity=0.137 Sum_probs=14.7
Q ss_pred CCEEEEccCCCCchhhhh
Q 037567 29 RDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~ 46 (374)
.++++.||||+|||..+-
T Consensus 60 ~~ill~G~pGtGKT~lAr 77 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVAL 77 (287)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 357999999999997653
No 331
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.60 E-value=0.003 Score=51.15 Aligned_cols=18 Identities=17% Similarity=0.325 Sum_probs=15.4
Q ss_pred CCEEEEccCCCCchhhhh
Q 037567 29 RDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~ 46 (374)
.+.++.+|+|+|||.+..
T Consensus 49 P~liisGpPG~GKTTsi~ 66 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSIL 66 (333)
T ss_pred CceEeeCCCCCchhhHHH
Confidence 478999999999998754
No 332
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=95.59 E-value=0.025 Score=47.29 Aligned_cols=104 Identities=12% Similarity=0.156 Sum_probs=73.2
Q ss_pred CCceeeeecCCChHHHHHHHHhhhcCC----eeEEEEeccccccccccCccEEEEECCCCChhHHHHhhccCC-CCCCce
Q 037567 252 GVKAGTYHGQMGSKAREEAHRLFIRDE----IRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCG-RDGIAS 326 (374)
Q Consensus 252 ~~~~~~~~~~~~~~~r~~~~~~f~~g~----~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~-R~~~~g 326 (374)
++.+..++++.+... -+|.++. ..|+|+-+++++|+.++++.+......+.+.++++||.=..| |.|-.+
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 577788887655433 3344443 778899999999999999999999988888899988854444 777788
Q ss_pred EEEEEeeccCCCcccceeccccchHHHHHHHHHHHHHHHH
Q 037567 327 VCWLYYARSNFAKGDFYCGESQTENQRTAIMESLLAAQRY 366 (374)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 366 (374)
.|-+|.+++-...+..+.. ..+.+.+++..|...
T Consensus 185 l~Ri~~~~~l~~~f~~i~~------~~e~lr~~i~~~~~~ 218 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHIAE------AEEELREEIKEMANN 218 (239)
T ss_pred ceEEecCHHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence 8999988865555554442 223345555555443
No 333
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.58 E-value=0.092 Score=47.14 Aligned_cols=87 Identities=17% Similarity=0.149 Sum_probs=50.2
Q ss_pred CCEEEEccCCCCchhhhhccc---cccCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhhhhhhhcCCeeEEE
Q 037567 29 RDCLVVMATGSGKSLCYQLPP---LVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLF 105 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~~---~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 105 (374)
.-+++.+++|+|||...+..+ ...+.+++++.-. +...|......+++.... ++.+
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E-Es~~qi~~Ra~rlg~~~~--------------------~l~l 141 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE-ESPEQIKLRADRLGISTE--------------------NLYL 141 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC-cCHHHHHHHHHHcCCCcc--------------------cEEE
Confidence 456899999999996543222 2245678887654 345566666665543210 1222
Q ss_pred EcCcccccCchhhHHHHHhcCccEEEEeccchhhc
Q 037567 106 MTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISE 140 (374)
Q Consensus 106 ~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~ 140 (374)
.....+ ......+...+.++||||+++.+..
T Consensus 142 ~~e~~l----e~I~~~i~~~~~~lVVIDSIq~l~~ 172 (372)
T cd01121 142 LAETNL----EDILASIEELKPDLVIIDSIQTVYS 172 (372)
T ss_pred EccCcH----HHHHHHHHhcCCcEEEEcchHHhhc
Confidence 222111 1222333345789999999998853
No 334
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.54 E-value=0.038 Score=48.26 Aligned_cols=97 Identities=15% Similarity=0.101 Sum_probs=54.6
Q ss_pred HHHHHHHc------CCCEEEEccCCCCchhhhhcc---ccccCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCch
Q 037567 20 DVIQRIIE------KRDCLVVMATGSGKSLCYQLP---PLVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDS 90 (374)
Q Consensus 20 ~~~~~~~~------~~~~l~~a~tGsGKT~~~~l~---~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~ 90 (374)
..++.++. +.-+.+.+|+|+|||..++-. ....+.+++++-.-..+-.+ .++++|....
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~---~a~~lGvd~~--------- 108 (321)
T TIGR02012 41 LSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV---YARKLGVDID--------- 108 (321)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHH---HHHHcCCCHH---------
Confidence 34555554 245679999999999654322 22356778877665444443 3444443211
Q ss_pred hhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhh
Q 037567 91 SVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCIS 139 (374)
Q Consensus 91 ~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~ 139 (374)
.+++..|+.....+...........+++||||-+-.+.
T Consensus 109 -----------~l~v~~p~~~eq~l~~~~~li~~~~~~lIVIDSv~al~ 146 (321)
T TIGR02012 109 -----------NLLVSQPDTGEQALEIAETLVRSGAVDIIVVDSVAALV 146 (321)
T ss_pred -----------HeEEecCCCHHHHHHHHHHHhhccCCcEEEEcchhhhc
Confidence 34455555432222221122223568999999988775
No 335
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.52 E-value=0.029 Score=48.58 Aligned_cols=61 Identities=15% Similarity=0.190 Sum_probs=44.0
Q ss_pred hHcCCCCCchhHHHHHHHHHcCC-CEEEEccCCCCchhhh--hccccccCCcEEEEcchHHHHH
Q 037567 7 KYFGYSVFRPYQKDVIQRIIEKR-DCLVVMATGSGKSLCY--QLPPLVTGKTALVVSPLISLMQ 67 (374)
Q Consensus 7 ~~~~~~~~~~~Q~~~~~~~~~~~-~~l~~a~tGsGKT~~~--~l~~~~~~~~~lil~P~~~l~~ 67 (374)
....|..+.+-|...+..+.... +++++|.||||||... ++.-....-+++.+-.+.+|.-
T Consensus 151 dli~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDtaELql 214 (355)
T COG4962 151 DLIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTAELQL 214 (355)
T ss_pred HHHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeehhhhcc
Confidence 44567778888888887777665 9999999999999542 2222334558999888877754
No 336
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.52 E-value=0.42 Score=41.04 Aligned_cols=49 Identities=20% Similarity=0.215 Sum_probs=27.5
Q ss_pred CEEEEccCCCCchhhhhccc---cccCCcEEEEc-c-hHHH-HHHHHHHHHHcCC
Q 037567 30 DCLVVMATGSGKSLCYQLPP---LVTGKTALVVS-P-LISL-MQDQVMSLKQRGI 78 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~l~~---~~~~~~~lil~-P-~~~l-~~q~~~~~~~~~~ 78 (374)
-+++.+|+|+|||.+....+ ...+.+++++. . .+.- ..|...+....+.
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i 128 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGV 128 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCe
Confidence 45678999999996643222 23455666654 3 2322 3444445555553
No 337
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.52 E-value=0.038 Score=49.23 Aligned_cols=16 Identities=38% Similarity=0.418 Sum_probs=14.1
Q ss_pred CEEEEccCCCCchhhh
Q 037567 30 DCLVVMATGSGKSLCY 45 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~ 45 (374)
.+++.||+|+|||..+
T Consensus 38 ~lll~Gp~GtGKT~la 53 (337)
T PRK12402 38 HLLVQGPPGSGKTAAV 53 (337)
T ss_pred eEEEECCCCCCHHHHH
Confidence 6899999999999654
No 338
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.061 Score=50.12 Aligned_cols=30 Identities=23% Similarity=0.151 Sum_probs=20.0
Q ss_pred CCCEEEEccCCCCchhhhhccccccCCcEE
Q 037567 28 KRDCLVVMATGSGKSLCYQLPPLVTGKTAL 57 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~~~~~~~~l 57 (374)
.+.++++||+|+|||..+-..+-+.+-..+
T Consensus 223 prGvLlHGPPGCGKT~lA~AiAgel~vPf~ 252 (802)
T KOG0733|consen 223 PRGVLLHGPPGCGKTSLANAIAGELGVPFL 252 (802)
T ss_pred CCceeeeCCCCccHHHHHHHHhhhcCCceE
Confidence 367899999999999765433333343333
No 339
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.089 Score=49.10 Aligned_cols=109 Identities=15% Similarity=0.169 Sum_probs=57.8
Q ss_pred CCCEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhhhhhhhcCCeeEEEEc
Q 037567 28 KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMT 107 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T 107 (374)
-..++++||+|+|||+.+-..+-..+. =++-+--=+|.+-|.-+-.+-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~-NFisVKGPELlNkYVGESErA------------------------------- 592 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGA-NFISVKGPELLNKYVGESERA------------------------------- 592 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccC-ceEeecCHHHHHHHhhhHHHH-------------------------------
Confidence 357899999999999864333322222 233344445666554442211
Q ss_pred CcccccCchhhHHHHHhcCccEEEEeccchhhc-ccCc-chHHHHHHHHHHHhcC----CCCeeEEEeecCccc
Q 037567 108 PEKACIIPISFWSKLLKAGVCLFAVDEAHCISE-WGHD-FRLEYKQLDKLRTFLL----GVPFVALTATATEKV 175 (374)
Q Consensus 108 ~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~-~~~~-~~~~~~~~~~~~~~~~----~~~~i~~SaT~~~~~ 175 (374)
.+..+.+...+...+|+|||++.+.. .+.. .....+.++.++-.+. ...+..+-||-.+..
T Consensus 593 -------VR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDi 659 (802)
T KOG0733|consen 593 -------VRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDI 659 (802)
T ss_pred -------HHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcc
Confidence 11222333445667899999999864 1111 1122233333333332 245667777866654
No 340
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.48 E-value=0.066 Score=46.83 Aligned_cols=33 Identities=18% Similarity=0.037 Sum_probs=25.8
Q ss_pred CCchhHHHHHHHHHc----C---CCEEEEccCCCCchhhh
Q 037567 13 VFRPYQKDVIQRIIE----K---RDCLVVMATGSGKSLCY 45 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~----~---~~~l~~a~tGsGKT~~~ 45 (374)
.++|+|...+..+.+ + +-.++.||.|.||+..+
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA 42 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLV 42 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH
Confidence 478999999988764 2 35689999999999543
No 341
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.46 E-value=0.24 Score=43.56 Aligned_cols=125 Identities=15% Similarity=0.119 Sum_probs=58.2
Q ss_pred CEEEEccCCCCchhhhhcc-c-c-ccCCcEEEEc-ch-HH-HHHHHHHHHHHcCCceEEcCCCCCchhhhhhhhcCCeeE
Q 037567 30 DCLVVMATGSGKSLCYQLP-P-L-VTGKTALVVS-PL-IS-LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQL 103 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~l~-~-~-~~~~~~lil~-P~-~~-l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 103 (374)
-+.+.||+|+|||.+.... . + ..+.+++++. ++ +. -.+|...+....++.........
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~---------------- 179 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGA---------------- 179 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCC----------------
Confidence 4578999999999654322 1 1 2355666654 33 22 23454444444443322111000
Q ss_pred EEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHH----hcCCCCeeEEEeecCcccHH
Q 037567 104 LFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRT----FLLGVPFVALTATATEKVRI 177 (374)
Q Consensus 104 ~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~SaT~~~~~~~ 177 (374)
.|. .............++++|+||=+.++...... ...+..+.+... ..+...++.++||.......
T Consensus 180 ---dpa---~~v~~~l~~~~~~~~D~ViIDTaGr~~~~~~l-~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~ 250 (318)
T PRK10416 180 ---DPA---SVAFDAIQAAKARGIDVLIIDTAGRLHNKTNL-MEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS 250 (318)
T ss_pred ---CHH---HHHHHHHHHHHhCCCCEEEEeCCCCCcCCHHH-HHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH
Confidence 000 00001111223467889999988765321111 111222222221 12344578899996554443
No 342
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.26 E-value=0.032 Score=52.23 Aligned_cols=108 Identities=17% Similarity=0.160 Sum_probs=63.6
Q ss_pred HHHHHHHc-----CCCEEEEccCCCCchhhhh---ccccccCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchh
Q 037567 20 DVIQRIIE-----KRDCLVVMATGSGKSLCYQ---LPPLVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSS 91 (374)
Q Consensus 20 ~~~~~~~~-----~~~~l~~a~tGsGKT~~~~---l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ 91 (374)
..++.++. +.-+++.+|||+|||...+ ...+.++.++++++ ..+-..|..+.++.+|+...-+
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s-~eEs~~~i~~~~~~lg~~~~~~-------- 320 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA-YEESRAQLLRNAYSWGIDFEEM-------- 320 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE-eeCCHHHHHHHHHHcCCChHHH--------
Confidence 34555554 4567999999999996533 22334567888877 5577888888888887642111
Q ss_pred hhhhhhcCCeeEEEEcCccc--ccCchhhHHHHHhcCccEEEEeccchhhc
Q 037567 92 VQTKAETGYFQLLFMTPEKA--CIIPISFWSKLLKAGVCLFAVDEAHCISE 140 (374)
Q Consensus 92 ~~~~~~~~~~~i~i~T~~~l--~~~~~~~~~~~~~~~~~~vviDE~h~~~~ 140 (374)
...+...++-..|... ..++......+...+.+.||||=...+..
T Consensus 321 ----~~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 321 ----EQQGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred ----hhCCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 1111122322222211 12223333444556788999999987743
No 343
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.26 E-value=0.099 Score=44.10 Aligned_cols=35 Identities=17% Similarity=0.054 Sum_probs=24.3
Q ss_pred cCCCEEEEccCCCCchhhhhcc---cccc-CCcEEEEcc
Q 037567 27 EKRDCLVVMATGSGKSLCYQLP---PLVT-GKTALVVSP 61 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~~l~---~~~~-~~~~lil~P 61 (374)
.|.-+++.|+||+|||...+-. .... +.++++++.
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 4566789999999999543322 2223 778888884
No 344
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.25 E-value=0.04 Score=51.44 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=20.3
Q ss_pred hHHHHHHHHH----cC---CCEEEEccCCCCchhhhh
Q 037567 17 YQKDVIQRII----EK---RDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 17 ~Q~~~~~~~~----~~---~~~l~~a~tGsGKT~~~~ 46 (374)
.|..+...+. ++ +.+++.||+|+|||.++.
T Consensus 25 Gq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~Ar 61 (507)
T PRK06645 25 GQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSAR 61 (507)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHH
Confidence 4555554432 33 357999999999997654
No 345
>PRK09354 recA recombinase A; Provisional
Probab=95.24 E-value=0.026 Score=49.72 Aligned_cols=97 Identities=18% Similarity=0.101 Sum_probs=55.7
Q ss_pred HHHHHHHc-C-----CCEEEEccCCCCchhhhhccc---cccCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCch
Q 037567 20 DVIQRIIE-K-----RDCLVVMATGSGKSLCYQLPP---LVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDS 90 (374)
Q Consensus 20 ~~~~~~~~-~-----~~~l~~a~tGsGKT~~~~l~~---~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~ 90 (374)
..++.++. | .-+.+.+|+|||||...+..+ ...+.+++++..-.++-.. .++++|....
T Consensus 46 ~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~---~a~~lGvdld--------- 113 (349)
T PRK09354 46 LALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV---YAKKLGVDID--------- 113 (349)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHH---HHHHcCCCHH---------
Confidence 34555555 3 355799999999996544322 3457788887776555543 3445544311
Q ss_pred hhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhh
Q 037567 91 SVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCIS 139 (374)
Q Consensus 91 ~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~ 139 (374)
++++..|+.....+...........+++||||=+-.+.
T Consensus 114 -----------~lli~qp~~~Eq~l~i~~~li~s~~~~lIVIDSvaaL~ 151 (349)
T PRK09354 114 -----------NLLVSQPDTGEQALEIADTLVRSGAVDLIVVDSVAALV 151 (349)
T ss_pred -----------HeEEecCCCHHHHHHHHHHHhhcCCCCEEEEeChhhhc
Confidence 34555554432222221122223568899999887664
No 346
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.18 E-value=0.023 Score=49.59 Aligned_cols=97 Identities=18% Similarity=0.058 Sum_probs=55.0
Q ss_pred HHHHHHHc------CCCEEEEccCCCCchhhhhccc---cccCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCch
Q 037567 20 DVIQRIIE------KRDCLVVMATGSGKSLCYQLPP---LVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDS 90 (374)
Q Consensus 20 ~~~~~~~~------~~~~l~~a~tGsGKT~~~~l~~---~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~ 90 (374)
..++.++. +.-+.+.+|+|+|||..++..+ ...+.+++++.+-..+-.+ .++.+|...
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~---~a~~lGvd~---------- 107 (325)
T cd00983 41 LSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPV---YAKKLGVDL---------- 107 (325)
T ss_pred HHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHH---HHHHcCCCH----------
Confidence 44555555 3456799999999996544332 2357788888876655543 334444321
Q ss_pred hhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhh
Q 037567 91 SVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCIS 139 (374)
Q Consensus 91 ~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~ 139 (374)
-++++..|......+...........+++||||=+-.+.
T Consensus 108 ----------~~l~v~~p~~~eq~l~i~~~li~s~~~~lIVIDSvaal~ 146 (325)
T cd00983 108 ----------DNLLISQPDTGEQALEIADSLVRSGAVDLIVVDSVAALV 146 (325)
T ss_pred ----------HHheecCCCCHHHHHHHHHHHHhccCCCEEEEcchHhhc
Confidence 024455554332222221122233568999999987664
No 347
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.17 E-value=0.025 Score=48.34 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=38.3
Q ss_pred cCCCEEEEccCCCCchhhhh---ccccccCCcEEEEcchHHHHHHHHHHHHHcCCceE
Q 037567 27 EKRDCLVVMATGSGKSLCYQ---LPPLVTGKTALVVSPLISLMQDQVMSLKQRGINAE 81 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~~---l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 81 (374)
.++.+++.|++|||||+..+ ...+..+.++++++-. +...+..+.+.++|....
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~-e~~~~l~~~~~~~g~d~~ 78 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTE-ESPEELLENARSFGWDLE 78 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEec-CCHHHHHHHHHHcCCCHH
Confidence 46788999999999995432 3334457778887765 566777777777766553
No 348
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.16 E-value=0.24 Score=46.25 Aligned_cols=55 Identities=18% Similarity=0.042 Sum_probs=30.9
Q ss_pred cCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCeeEEEeecCcccHHHHHHhc
Q 037567 125 AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSL 183 (374)
Q Consensus 125 ~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~ 183 (374)
.+.++|+||.+-...... .....+..+.........+.++++........+...+
T Consensus 427 ~~~DLVLIDTaG~s~~D~----~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~eii~~f 481 (559)
T PRK12727 427 RDYKLVLIDTAGMGQRDR----ALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVRRF 481 (559)
T ss_pred ccCCEEEecCCCcchhhH----HHHHHHHHHHHhhcCCcEEEEECCCChhHHHHHHHHH
Confidence 467899999997542111 1112222232223345688888887766555555544
No 349
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.16 E-value=0.12 Score=44.36 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=24.6
Q ss_pred HHcCCCEEEEccCCCCchhhhhc---ccccc-CCcEEEEcc
Q 037567 25 IIEKRDCLVVMATGSGKSLCYQL---PPLVT-GKTALVVSP 61 (374)
Q Consensus 25 ~~~~~~~l~~a~tGsGKT~~~~l---~~~~~-~~~~lil~P 61 (374)
+..+.-+++.|++|+|||..... .+... +.+++++.-
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 34466779999999999954332 22233 677888764
No 350
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.16 E-value=0.074 Score=50.85 Aligned_cols=17 Identities=18% Similarity=0.282 Sum_probs=14.4
Q ss_pred CEEEEccCCCCchhhhh
Q 037567 30 DCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~ 46 (374)
.++++||.|+|||.++.
T Consensus 48 a~L~~Gp~GvGKTt~Ar 64 (598)
T PRK09111 48 AFMLTGVRGVGKTTTAR 64 (598)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 57999999999997654
No 351
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.14 E-value=0.1 Score=49.19 Aligned_cols=16 Identities=25% Similarity=0.254 Sum_probs=13.5
Q ss_pred EEEEccCCCCchhhhh
Q 037567 31 CLVVMATGSGKSLCYQ 46 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~~ 46 (374)
+++.||.|+|||..+.
T Consensus 41 ~Lf~Gp~GvGKTTlAr 56 (546)
T PRK14957 41 YLFTGTRGVGKTTLGR 56 (546)
T ss_pred EEEECCCCCCHHHHHH
Confidence 6899999999996643
No 352
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=95.14 E-value=0.11 Score=47.65 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=16.2
Q ss_pred CCCEEEEccCCCCchhhhhc
Q 037567 28 KRDCLVVMATGSGKSLCYQL 47 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l 47 (374)
.+.+++.||+|+|||+.+-.
T Consensus 217 p~gVLL~GPPGTGKT~LAra 236 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKA 236 (438)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 35789999999999976543
No 353
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.13 E-value=0.21 Score=39.73 Aligned_cols=34 Identities=24% Similarity=0.112 Sum_probs=23.4
Q ss_pred CEEEEccCCCCchhhhhcccc---ccCCcEEEEcchH
Q 037567 30 DCLVVMATGSGKSLCYQLPPL---VTGKTALVVSPLI 63 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~l~~~---~~~~~~lil~P~~ 63 (374)
=.++.+|++||||...+..+. ..+.++++..|..
T Consensus 6 l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~i 42 (201)
T COG1435 6 LEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAI 42 (201)
T ss_pred EEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEeccc
Confidence 357899999999975332222 1477788888864
No 354
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.12 E-value=0.11 Score=49.89 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=14.3
Q ss_pred CEEEEccCCCCchhhhh
Q 037567 30 DCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~ 46 (374)
.+|+.||+|+|||.++.
T Consensus 40 a~Lf~GP~GvGKTTlAr 56 (709)
T PRK08691 40 AYLLTGTRGVGKTTIAR 56 (709)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 46999999999997653
No 355
>PRK10689 transcription-repair coupling factor; Provisional
Probab=95.11 E-value=0.17 Score=52.35 Aligned_cols=79 Identities=11% Similarity=0.099 Sum_probs=63.3
Q ss_pred HhhcCCCcEEEEecchhHHHHHHHHHHHc----CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEecc-ccccccccCc
Q 037567 223 KSVAGAGSIIVYCMTIKDVEEISKALKQL----GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMA-FGMGIDKPDV 297 (374)
Q Consensus 223 ~~~~~~~~~lVf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~-~~~G~d~~~~ 297 (374)
.....+.+++|.+|+..-+.+.++.+++. ++.+..+++..+..++.++++....|..+|+|+|+. +...+++.++
T Consensus 644 ~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L 723 (1147)
T PRK10689 644 LAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDL 723 (1147)
T ss_pred HHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhC
Confidence 33456889999999999999999888763 456778899999999999999999999999999984 4444566666
Q ss_pred cEEE
Q 037567 298 RHVI 301 (374)
Q Consensus 298 ~~vi 301 (374)
..+|
T Consensus 724 ~lLV 727 (1147)
T PRK10689 724 GLLI 727 (1147)
T ss_pred CEEE
Confidence 6655
No 356
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.09 E-value=0.062 Score=51.37 Aligned_cols=16 Identities=25% Similarity=0.328 Sum_probs=13.5
Q ss_pred EEEEccCCCCchhhhh
Q 037567 31 CLVVMATGSGKSLCYQ 46 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~~ 46 (374)
++++||.|+|||.++.
T Consensus 41 ~Lf~Gp~GvGKTtlAr 56 (618)
T PRK14951 41 YLFTGTRGVGKTTVSR 56 (618)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4899999999997654
No 357
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.08 E-value=0.079 Score=51.36 Aligned_cols=17 Identities=24% Similarity=0.305 Sum_probs=14.0
Q ss_pred CEEEEccCCCCchhhhh
Q 037567 30 DCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~ 46 (374)
-+++.||.|+|||.++.
T Consensus 42 AYLF~GP~GtGKTt~Ar 58 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAK 58 (725)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 35899999999997653
No 358
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.06 E-value=0.096 Score=47.76 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=14.1
Q ss_pred CEEEEccCCCCchhhhh
Q 037567 30 DCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~ 46 (374)
..+++||+|+|||.++.
T Consensus 40 a~lf~Gp~G~GKtt~A~ 56 (397)
T PRK14955 40 GYIFSGLRGVGKTTAAR 56 (397)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 37899999999996653
No 359
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=95.04 E-value=0.2 Score=45.13 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=15.5
Q ss_pred CCEEEEccCCCCchhhhhc
Q 037567 29 RDCLVVMATGSGKSLCYQL 47 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l 47 (374)
+.+++.||+|+|||..+-.
T Consensus 157 ~gvLL~GppGtGKT~laka 175 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLAKA 175 (364)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4689999999999976543
No 360
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.04 E-value=0.24 Score=45.47 Aligned_cols=50 Identities=16% Similarity=0.110 Sum_probs=28.0
Q ss_pred CEEEEccCCCCchhhhhcccc---ccCCcEEEEcc-h--HHHHHHHHHHHHHcCCc
Q 037567 30 DCLVVMATGSGKSLCYQLPPL---VTGKTALVVSP-L--ISLMQDQVMSLKQRGIN 79 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~l~~~---~~~~~~lil~P-~--~~l~~q~~~~~~~~~~~ 79 (374)
.++++|++|+|||.+....+. ..+.+++++.. + .+..+|+.......+..
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp 152 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVP 152 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCc
Confidence 467899999999966532221 23455555443 2 23345555554555443
No 361
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.03 E-value=0.21 Score=45.25 Aligned_cols=57 Identities=11% Similarity=0.197 Sum_probs=33.0
Q ss_pred hcCccEEEEeccchhhcccCcchHHHHHHHHHHHhc----CCCCeeEEEeecCcccHHHHHHhcC
Q 037567 124 KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFL----LGVPFVALTATATEKVRIDIINSLK 184 (374)
Q Consensus 124 ~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~SaT~~~~~~~~~~~~~~ 184 (374)
..+.++|+||=+..... .......+..+.... +...++.+|||........+...+.
T Consensus 297 ~~~~D~VLIDTaGr~~r----d~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~ 357 (432)
T PRK12724 297 RDGSELILIDTAGYSHR----NLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYE 357 (432)
T ss_pred hCCCCEEEEeCCCCCcc----CHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhc
Confidence 35778999996654321 112223344333322 2346789999998876666666554
No 362
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=95.02 E-value=0.21 Score=47.42 Aligned_cols=87 Identities=22% Similarity=0.266 Sum_probs=69.5
Q ss_pred HHHHHHHHHhhcCCCcEEEEecchhHHHH----HHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccc-c
Q 037567 215 DELVQEILKSVAGAGSIIVYCMTIKDVEE----ISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAF-G 289 (374)
Q Consensus 215 ~~~~~~~~~~~~~~~~~lVf~~~~~~~~~----l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~-~ 289 (374)
.-.+-..+.....+.++...+||.=-|++ +.+.|...|+.+.++.|.+....|.++++...+|+++++|.|.++ .
T Consensus 298 vVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ 377 (677)
T COG1200 298 VVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ 377 (677)
T ss_pred HHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh
Confidence 33444556667788899999999665554 445555568999999999999999999999999999999999954 5
Q ss_pred ccccccCccEEE
Q 037567 290 MGIDKPDVRHVI 301 (374)
Q Consensus 290 ~G~d~~~~~~vi 301 (374)
..+++.++-.||
T Consensus 378 d~V~F~~LgLVI 389 (677)
T COG1200 378 DKVEFHNLGLVI 389 (677)
T ss_pred cceeecceeEEE
Confidence 688887777766
No 363
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.00 E-value=0.11 Score=55.13 Aligned_cols=39 Identities=18% Similarity=0.188 Sum_probs=26.1
Q ss_pred CCCEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHH
Q 037567 28 KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQ 67 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~ 67 (374)
.+.+++.||+|+|||+.+-..+...+.+.+-+... +++.
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs-~fl~ 1668 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLN-KFLD 1668 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHH-HHhh
Confidence 46789999999999987554444455555555444 4544
No 364
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.95 E-value=0.031 Score=48.01 Aligned_cols=31 Identities=16% Similarity=0.217 Sum_probs=20.5
Q ss_pred hhHHHHHHHHH----cCC-CEEEEccCCCCchhhhh
Q 037567 16 PYQKDVIQRII----EKR-DCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 16 ~~Q~~~~~~~~----~~~-~~l~~a~tGsGKT~~~~ 46 (374)
+.+.+++..+. .+. .+++.||+|+|||....
T Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 26 KGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 34455665543 223 47899999999997643
No 365
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.91 E-value=0.11 Score=50.34 Aligned_cols=89 Identities=19% Similarity=0.206 Sum_probs=70.5
Q ss_pred chHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHc-CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccc
Q 037567 212 SFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQL-GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGM 290 (374)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~ 290 (374)
.+.+-++..+.+.+..++++||.+|.......+.+.|+.+ |.++..+|+++++.+|...-.....|+.+|+|.|.++-
T Consensus 229 GKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl- 307 (730)
T COG1198 229 GKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL- 307 (730)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-
Confidence 3344555556666678899999999999999999888874 78899999999999999999999999999999997532
Q ss_pred cccccCccEEE
Q 037567 291 GIDKPDVRHVI 301 (374)
Q Consensus 291 G~d~~~~~~vi 301 (374)
-.=++++..||
T Consensus 308 F~Pf~~LGLII 318 (730)
T COG1198 308 FLPFKNLGLII 318 (730)
T ss_pred cCchhhccEEE
Confidence 22334555555
No 366
>CHL00195 ycf46 Ycf46; Provisional
Probab=94.91 E-value=0.17 Score=47.13 Aligned_cols=33 Identities=27% Similarity=0.181 Sum_probs=20.9
Q ss_pred CCCEEEEccCCCCchhhhhccccccCCcEEEEc
Q 037567 28 KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~ 60 (374)
.+.+++.||+|+|||+.+-..+-.-+...+.+-
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~ 291 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLD 291 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEEE
Confidence 357899999999999765333323334444443
No 367
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.90 E-value=0.14 Score=43.64 Aligned_cols=126 Identities=17% Similarity=0.092 Sum_probs=64.9
Q ss_pred CCEEEEccCCCCchhhhhcccc--c-cCCcEEEEcc-h--HHHHHHHHHHHHHcCCceEEcCCCCCchhhhhhhhcCCee
Q 037567 29 RDCLVVMATGSGKSLCYQLPPL--V-TGKTALVVSP-L--ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQ 102 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~~~--~-~~~~~lil~P-~--~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (374)
..+.+.+++|+|||..+...+. . .+.++.++.. + ...+.||.......+......
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~------------------- 136 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV------------------- 136 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec-------------------
Confidence 4668899999999976543222 1 2344544433 2 256667766555443322211
Q ss_pred EEEEcCcccccCchhhHHHH-HhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhc-CCCCeeEEEeecCcccHHHHH
Q 037567 103 LLFMTPEKACIIPISFWSKL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFL-LGVPFVALTATATEKVRIDII 180 (374)
Q Consensus 103 i~i~T~~~l~~~~~~~~~~~-~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~SaT~~~~~~~~~~ 180 (374)
.+++.+. ...... ...+++++++|-+-+.... ...+..+..+.... +....+.+|||........+.
T Consensus 137 ---~~~~~l~----~~l~~l~~~~~~D~ViIDt~Gr~~~~----~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~ 205 (270)
T PRK06731 137 ---RDEAAMT----RALTYFKEEARVDYILIDTAGKNYRA----SETVEEMIETMGQVEPDYICLTLSASMKSKDMIEII 205 (270)
T ss_pred ---CCHHHHH----HHHHHHHhcCCCCEEEEECCCCCcCC----HHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHH
Confidence 1222221 111111 1246799999998764321 11223333333322 233467799998776665666
Q ss_pred HhcC
Q 037567 181 NSLK 184 (374)
Q Consensus 181 ~~~~ 184 (374)
..+.
T Consensus 206 ~~f~ 209 (270)
T PRK06731 206 TNFK 209 (270)
T ss_pred HHhC
Confidence 5544
No 368
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=0.013 Score=49.86 Aligned_cols=19 Identities=47% Similarity=0.621 Sum_probs=16.1
Q ss_pred CCCEEEEccCCCCchhhhh
Q 037567 28 KRDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~ 46 (374)
..|+++.+|||||||+.+.
T Consensus 97 KSNILLiGPTGsGKTlLAq 115 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred eccEEEECCCCCcHHHHHH
Confidence 4578999999999998654
No 369
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=0.092 Score=45.87 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=19.6
Q ss_pred CCEEEEccCCCCchhhhhccccccCCc
Q 037567 29 RDCLVVMATGSGKSLCYQLPPLVTGKT 55 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~~~~~~~~ 55 (374)
+.+++.+|+|+|||..+-..+-..+..
T Consensus 128 kGiLL~GPpG~GKTmlAKA~Akeaga~ 154 (386)
T KOG0737|consen 128 KGILLYGPPGTGKTMLAKAIAKEAGAN 154 (386)
T ss_pred ccceecCCCCchHHHHHHHHHHHcCCC
Confidence 578999999999998765444444443
No 370
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=94.87 E-value=0.036 Score=54.90 Aligned_cols=63 Identities=13% Similarity=0.198 Sum_probs=47.6
Q ss_pred CCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccc---cc----cCCcEEEEcchHHHHHHHHHHHHHc
Q 037567 12 SVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPP---LV----TGKTALVVSPLISLMQDQVMSLKQR 76 (374)
Q Consensus 12 ~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~---~~----~~~~~lil~P~~~l~~q~~~~~~~~ 76 (374)
..|+|-|.+++.. ...+++|.|.+|||||.+..--+ +. ...++|+++-|+..+.++.+.+.+.
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~ 72 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKL 72 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHH
Confidence 4689999999974 45789999999999996533211 11 2357999999999999888887643
No 371
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.87 E-value=0.042 Score=48.10 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=33.8
Q ss_pred CCchhHHHHHHHHH-cCCCEEEEccCCCCchhhh--hcccc---ccCCcEEEEcchHHH
Q 037567 13 VFRPYQKDVIQRII-EKRDCLVVMATGSGKSLCY--QLPPL---VTGKTALVVSPLISL 65 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~-~~~~~l~~a~tGsGKT~~~--~l~~~---~~~~~~lil~P~~~l 65 (374)
.+.+.|.+.+..+. .+.+++++|+||||||... ++..+ ....+++.+-...+|
T Consensus 128 ~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 128 IMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCccc
Confidence 35666776666544 4678899999999999543 22222 234566666666555
No 372
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=94.83 E-value=0.031 Score=52.37 Aligned_cols=54 Identities=30% Similarity=0.437 Sum_probs=42.9
Q ss_pred CEEEEccCCCCchhhhhcccccc-CCcEEEEcchHHHHHHHHHHHHHcCCceEEc
Q 037567 30 DCLVVMATGSGKSLCYQLPPLVT-GKTALVVSPLISLMQDQVMSLKQRGINAEFL 83 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~l~~~~~-~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 83 (374)
++++.||||||||..+.+|.+.. ...++|.=|..++...+....++.|.++.++
T Consensus 46 h~lvig~tgSGKt~~~viP~ll~~~~s~iV~D~KgEl~~~t~~~r~~~G~~V~vl 100 (469)
T PF02534_consen 46 HVLVIGPTGSGKTTSFVIPNLLNYPGSMIVTDPKGELYEKTAGYRKKRGYKVYVL 100 (469)
T ss_pred EEEEEeCCCCCccceeeHhHHHhccCCEEEEECCCcHHHHHHHHHHHCCCEEEEe
Confidence 58999999999998887775543 4578888888899988888888877665544
No 373
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=94.82 E-value=0.043 Score=52.35 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=46.2
Q ss_pred CCEEEEccCCCCchhhhhcccccc-CCcEEEEcchHHHHHHHHHHHHHcCCceEEcC
Q 037567 29 RDCLVVMATGSGKSLCYQLPPLVT-GKTALVVSPLISLMQDQVMSLKQRGINAEFLG 84 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~~~~~-~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 84 (374)
.++++.||||||||..+.+|.+.. ...++|+=|.-++...+....++.|-.+.++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~~S~VV~DpKGEl~~~Ta~~R~~~G~~V~vfd 215 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWEDSVVVHDIKLENYELTSGWREKQGQKVFVWE 215 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEEe
Confidence 468999999999999998886654 56788888999999998888888887776554
No 374
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.81 E-value=0.18 Score=44.90 Aligned_cols=16 Identities=13% Similarity=0.187 Sum_probs=13.5
Q ss_pred cCccEEEEeccchhhc
Q 037567 125 AGVCLFAVDEAHCISE 140 (374)
Q Consensus 125 ~~~~~vviDE~h~~~~ 140 (374)
.++.++||||+|.+..
T Consensus 140 g~~rVviIDeAd~l~~ 155 (351)
T PRK09112 140 GNWRIVIIDPADDMNR 155 (351)
T ss_pred CCceEEEEEchhhcCH
Confidence 4578999999999865
No 375
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=0.059 Score=48.50 Aligned_cols=41 Identities=27% Similarity=0.315 Sum_probs=29.6
Q ss_pred CCEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHH
Q 037567 29 RDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQV 70 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~ 70 (374)
+..++.+|+|+|||...-..+.+......-+.|+ .|+.-|.
T Consensus 187 rglLLfGPpgtGKtmL~~aiAsE~~atff~iSas-sLtsK~~ 227 (428)
T KOG0740|consen 187 RGLLLFGPPGTGKTMLAKAIATESGATFFNISAS-SLTSKYV 227 (428)
T ss_pred chhheecCCCCchHHHHHHHHhhhcceEeeccHH-Hhhhhcc
Confidence 4668999999999987655555666667777777 5665443
No 376
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.79 E-value=0.051 Score=48.09 Aligned_cols=40 Identities=20% Similarity=0.051 Sum_probs=24.3
Q ss_pred cCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCeeEEEee
Q 037567 125 AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTAT 170 (374)
Q Consensus 125 ~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 170 (374)
.+..++++|||+.+.... ...+.+..+..+....+.+++.
T Consensus 108 ~~~kviiidead~mt~~A------~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTEDA------ANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhHHH------HHHHHHHhccCCCCeEEEEEcC
Confidence 457899999999986511 1444445554444445555544
No 377
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=94.74 E-value=0.091 Score=51.91 Aligned_cols=61 Identities=18% Similarity=0.305 Sum_probs=52.6
Q ss_pred CCCcEEEEecchhHHHHHHHHHHHcC-----Cceee-eecCCChHHHHHHHHhhhcCCeeEEEEecc
Q 037567 227 GAGSIIVYCMTIKDVEEISKALKQLG-----VKAGT-YHGQMGSKAREEAHRLFIRDEIRVMVATMA 287 (374)
Q Consensus 227 ~~~~~lVf~~~~~~~~~l~~~l~~~~-----~~~~~-~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~ 287 (374)
.++++++.+||..-+.+.++.|+... ..+.. +|+.++.++++..++++.+|+.+|+|+|+.
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 67899999999999999999988742 33322 899999999999999999999999999974
No 378
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.74 E-value=0.088 Score=49.36 Aligned_cols=16 Identities=25% Similarity=0.285 Sum_probs=13.5
Q ss_pred EEEEccCCCCchhhhh
Q 037567 31 CLVVMATGSGKSLCYQ 46 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~~ 46 (374)
.++.||+|+|||.++.
T Consensus 39 ~Lf~GppGtGKTTlA~ 54 (504)
T PRK14963 39 YLFSGPRGVGKTTTAR 54 (504)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4999999999997653
No 379
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.74 E-value=0.17 Score=50.84 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
..+.++.||+|+|||...
T Consensus 199 ~~n~lL~G~pGvGKT~l~ 216 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIV 216 (857)
T ss_pred cCceEEECCCCCCHHHHH
Confidence 358899999999999654
No 380
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.70 E-value=0.087 Score=50.20 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=14.1
Q ss_pred CEEEEccCCCCchhhhh
Q 037567 30 DCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~ 46 (374)
.+|+.+|.|+|||.++.
T Consensus 40 a~Lf~GPpG~GKTtiAr 56 (624)
T PRK14959 40 AYLFSGTRGVGKTTIAR 56 (624)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 46889999999997654
No 381
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=94.67 E-value=0.057 Score=50.35 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
.+.+++.||+|+|||..+
T Consensus 216 p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CcceEEECCCCCcHHHHH
Confidence 367899999999999754
No 382
>PRK09087 hypothetical protein; Validated
Probab=94.66 E-value=0.11 Score=43.25 Aligned_cols=16 Identities=25% Similarity=0.254 Sum_probs=13.6
Q ss_pred CEEEEccCCCCchhhh
Q 037567 30 DCLVVMATGSGKSLCY 45 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~ 45 (374)
.++++||+|+|||...
T Consensus 46 ~l~l~G~~GsGKThLl 61 (226)
T PRK09087 46 VVVLAGPVGSGKTHLA 61 (226)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4899999999999643
No 383
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.66 E-value=0.33 Score=42.85 Aligned_cols=32 Identities=22% Similarity=0.363 Sum_probs=25.7
Q ss_pred CchhHHHHHHHHHcC-----CCEEEEccCCCCchhhh
Q 037567 14 FRPYQKDVIQRIIEK-----RDCLVVMATGSGKSLCY 45 (374)
Q Consensus 14 ~~~~Q~~~~~~~~~~-----~~~l~~a~tGsGKT~~~ 45 (374)
++|+|...+..+.+. +..++.||.|.|||..+
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la 38 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFA 38 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHH
Confidence 479999999988742 34689999999999554
No 384
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=94.56 E-value=0.098 Score=47.81 Aligned_cols=129 Identities=17% Similarity=0.211 Sum_probs=63.5
Q ss_pred EEEEccCCCCchhhhhccc----cc--cCCcEEEEcchHH-HHHHHHHHHH----HcCCceEEcCCCCCchhhhhhhhcC
Q 037567 31 CLVVMATGSGKSLCYQLPP----LV--TGKTALVVSPLIS-LMQDQVMSLK----QRGINAEFLGSAQTDSSVQTKAETG 99 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~~l~~----~~--~~~~~lil~P~~~-l~~q~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (374)
.++.|+.|||||....+.+ +. .+.+++++-|+.. +...+..++. .+|+....-...... ... ....
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i~-~~~~ 80 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EIK-ILNT 80 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EEE-ecCC
Confidence 5789999999996654332 23 5677888888876 3444444443 445432111111000 000 0111
Q ss_pred CeeEEEEcC-cccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCeeEEEeecCccc
Q 037567 100 YFQLLFMTP-EKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175 (374)
Q Consensus 100 ~~~i~i~T~-~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~ 175 (374)
+..|++..- +.. .+......+.++++||+..+... .+. ..+.+++. ......+++|.+|....
T Consensus 81 g~~i~f~g~~d~~-------~~ik~~~~~~~~~idEa~~~~~~--~~~---~l~~rlr~-~~~~~~i~~t~NP~~~~ 144 (396)
T TIGR01547 81 GKKFIFKGLNDKP-------NKLKSGAGIAIIWFEEASQLTFE--DIK---ELIPRLRE-TGGKKFIIFSSNPESPL 144 (396)
T ss_pred CeEEEeecccCCh-------hHhhCcceeeeehhhhhhhcCHH--HHH---HHHHHhhc-cCCccEEEEEcCcCCCc
Confidence 224444333 211 11112233689999999987531 111 11222221 11222588998987643
No 385
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.55 E-value=0.067 Score=50.95 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=13.8
Q ss_pred CEEEEccCCCCchhhhh
Q 037567 30 DCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~ 46 (374)
-++++||.|+|||.++-
T Consensus 40 ayLf~Gp~GtGKTt~Ak 56 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAK 56 (559)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46889999999996643
No 386
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=0.56 Score=45.31 Aligned_cols=56 Identities=18% Similarity=0.113 Sum_probs=31.4
Q ss_pred HHHhcCccEEEEeccchhhc-c------cCcchHHHHHHHHHHHhcC---CCCeeEEEeecCcccH
Q 037567 121 KLLKAGVCLFAVDEAHCISE-W------GHDFRLEYKQLDKLRTFLL---GVPFVALTATATEKVR 176 (374)
Q Consensus 121 ~~~~~~~~~vviDE~h~~~~-~------~~~~~~~~~~~~~~~~~~~---~~~~i~~SaT~~~~~~ 176 (374)
+.......+|++||.+.+.. . |--+....+++..-...++ ...+..+-||-.++..
T Consensus 759 rAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLL 824 (953)
T KOG0736|consen 759 RARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLL 824 (953)
T ss_pred HhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCcccc
Confidence 33345567899999999853 2 2222222233332233333 3567888888777654
No 387
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.49 E-value=0.22 Score=50.08 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
.++.++.||+|+|||...
T Consensus 200 ~~n~lL~G~pGvGKTal~ 217 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIA 217 (821)
T ss_pred cCCeEEECCCCCCHHHHH
Confidence 458899999999999764
No 388
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=94.49 E-value=0.21 Score=39.64 Aligned_cols=33 Identities=30% Similarity=0.256 Sum_probs=22.1
Q ss_pred EEEEccCCCCchhhhhcccc---ccCCcEEEEcchH
Q 037567 31 CLVVMATGSGKSLCYQLPPL---VTGKTALVVSPLI 63 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~~l~~~---~~~~~~lil~P~~ 63 (374)
.++.||++||||...+-.+. ..+.+++++-|..
T Consensus 4 ~~i~GpM~sGKS~eLi~~~~~~~~~~~~v~~~kp~~ 39 (176)
T PF00265_consen 4 EFITGPMFSGKSTELIRRIHRYEIAGKKVLVFKPAI 39 (176)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEEEST
T ss_pred EEEECCcCChhHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 47889999999975332221 2477888888864
No 389
>PRK10867 signal recognition particle protein; Provisional
Probab=94.46 E-value=0.18 Score=46.12 Aligned_cols=52 Identities=17% Similarity=0.098 Sum_probs=30.9
Q ss_pred EEEEccCCCCchhhhhcccc---cc-CCcEEEE-cc-hH-HHHHHHHHHHHHcCCceEE
Q 037567 31 CLVVMATGSGKSLCYQLPPL---VT-GKTALVV-SP-LI-SLMQDQVMSLKQRGINAEF 82 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~~l~~~---~~-~~~~lil-~P-~~-~l~~q~~~~~~~~~~~~~~ 82 (374)
+++++++|+|||.+..-.+. .. +.+++++ +. .+ +..+|+.......++.+..
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~ 161 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFP 161 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEe
Confidence 57899999999976543222 23 4555544 33 23 3345776666666665443
No 390
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.45 E-value=0.14 Score=48.95 Aligned_cols=17 Identities=29% Similarity=0.302 Sum_probs=13.8
Q ss_pred CEEEEccCCCCchhhhh
Q 037567 30 DCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~ 46 (374)
.+++.||.|+|||.++.
T Consensus 40 ayLf~Gp~G~GKtt~A~ 56 (576)
T PRK14965 40 AFLFTGARGVGKTSTAR 56 (576)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 35899999999996653
No 391
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.45 E-value=0.057 Score=47.80 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=27.2
Q ss_pred HcCCCEEEEccCCCCchhhh--hccccccCCcEEEEcchHHH
Q 037567 26 IEKRDCLVVMATGSGKSLCY--QLPPLVTGKTALVVSPLISL 65 (374)
Q Consensus 26 ~~~~~~l~~a~tGsGKT~~~--~l~~~~~~~~~lil~P~~~l 65 (374)
..++++++.||||||||... ++..+....+++.+-++.++
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El 201 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLEL 201 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccc
Confidence 35789999999999999542 22333345567776666655
No 392
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.42 E-value=0.16 Score=50.39 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
++.+++.||+|+|||...
T Consensus 212 ~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CceEEEECCCCCChHHHH
Confidence 467899999999999754
No 393
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=94.41 E-value=0.1 Score=45.77 Aligned_cols=17 Identities=24% Similarity=0.217 Sum_probs=14.2
Q ss_pred CCEEEEccCCCCchhhh
Q 037567 29 RDCLVVMATGSGKSLCY 45 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~ 45 (374)
.++++.||+|+|||..+
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35899999999999654
No 394
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=94.38 E-value=0.062 Score=54.06 Aligned_cols=101 Identities=13% Similarity=0.031 Sum_probs=76.0
Q ss_pred cCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEE-EEeccccccccccCccEEEEEC
Q 037567 226 AGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVM-VATMAFGMGIDKPDVRHVIHYG 304 (374)
Q Consensus 226 ~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~il-v~t~~~~~G~d~~~~~~vi~~~ 304 (374)
....++|||+.-......+...+...++....-.+ .++....+..|.. ++++ +-+...+.|+|+-+..+|+...
T Consensus 1219 ~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~---t~d~~dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hvfl~e 1293 (1394)
T KOG0298|consen 1219 NEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE---TEDFDDCIICFKS--IDCLLLFVSKGSKGLNLIEATHVFLVE 1293 (1394)
T ss_pred CcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC---Ccchhhhhhhccc--ceEEEEEeccCcccccHHhhhhhheec
Confidence 45578999988777777777777766655333222 3444555666655 5654 5777889999999999999999
Q ss_pred CCCChhHHHHhhccCCCCCCceEEEEE
Q 037567 305 CPKTLESYYQESGRCGRDGIASVCWLY 331 (374)
Q Consensus 305 ~p~s~~~~~Q~~GR~~R~~~~g~~~~~ 331 (374)
+-.++..-.|.+||+.|.||....++.
T Consensus 1294 PiLN~~~E~QAigRvhRiGQ~~pT~V~ 1320 (1394)
T KOG0298|consen 1294 PILNPGDEAQAIGRVHRIGQKRPTFVH 1320 (1394)
T ss_pred cccCchHHHhhhhhhhhcccccchhhh
Confidence 999999999999999999987655443
No 395
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.38 E-value=0.11 Score=46.67 Aligned_cols=29 Identities=14% Similarity=0.127 Sum_probs=19.8
Q ss_pred hHHHHHHHHHc----C---CCEEEEccCCCCchhhh
Q 037567 17 YQKDVIQRIIE----K---RDCLVVMATGSGKSLCY 45 (374)
Q Consensus 17 ~Q~~~~~~~~~----~---~~~l~~a~tGsGKT~~~ 45 (374)
.|.++...+.+ + +-.++.||.|+||+..+
T Consensus 23 Gq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA 58 (365)
T PRK07471 23 GHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLA 58 (365)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHH
Confidence 46666555432 2 24789999999999553
No 396
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=94.37 E-value=0.026 Score=47.24 Aligned_cols=83 Identities=13% Similarity=0.037 Sum_probs=58.6
Q ss_pred CCcEEEEcchHHHHHHHHHHHHHcC---CceEEcCCCCCc-hhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCcc
Q 037567 53 GKTALVVSPLISLMQDQVMSLKQRG---INAEFLGSAQTD-SSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVC 128 (374)
Q Consensus 53 ~~~~lil~P~~~l~~q~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~ 128 (374)
.+.+|||+.+--=+-++.+.++.+. ..+.-+++.... .+...........|.||||+++..++.. +.+.+.++.
T Consensus 126 sP~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~--~~L~l~~l~ 203 (252)
T PF14617_consen 126 SPHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLEN--GALSLSNLK 203 (252)
T ss_pred CCEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHc--CCCCcccCe
Confidence 5678888888766889999999874 222233333322 2233333445789999999999988765 666778899
Q ss_pred EEEEeccch
Q 037567 129 LFAVDEAHC 137 (374)
Q Consensus 129 ~vviDE~h~ 137 (374)
+||+|--|.
T Consensus 204 ~ivlD~s~~ 212 (252)
T PF14617_consen 204 RIVLDWSYL 212 (252)
T ss_pred EEEEcCCcc
Confidence 999998764
No 397
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.34 E-value=0.044 Score=50.04 Aligned_cols=32 Identities=31% Similarity=0.536 Sum_probs=25.6
Q ss_pred CchhHHHHHHHHHcCCC--EEEEccCCCCchhhh
Q 037567 14 FRPYQKDVIQRIIEKRD--CLVVMATGSGKSLCY 45 (374)
Q Consensus 14 ~~~~Q~~~~~~~~~~~~--~l~~a~tGsGKT~~~ 45 (374)
+.+.|.+.+..+.+... +++.||||||||.+.
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTL 275 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTL 275 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHH
Confidence 47888888888887654 467999999999663
No 398
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=94.24 E-value=0.098 Score=49.95 Aligned_cols=62 Identities=18% Similarity=0.149 Sum_probs=49.7
Q ss_pred CchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccc---cc------cCCcEEEEcchHHHHHHHHHHHHH
Q 037567 14 FRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPP---LV------TGKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 14 ~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~---~~------~~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
+..-|..|++..+..+-.++.+|+|+|||++.+.++ +. ..-+++++|-|...++|....+..
T Consensus 379 ldsSq~~A~qs~ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~ 449 (1025)
T KOG1807|consen 379 LDSSQQFAKQSKLTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYY 449 (1025)
T ss_pred ecHHHHHHHHHHhhhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHh
Confidence 445699999999999989999999999997754432 21 256799999999999998887764
No 399
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=94.21 E-value=0.059 Score=47.81 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=15.1
Q ss_pred CCEEEEccCCCCchhhhh
Q 037567 29 RDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~ 46 (374)
..+++.||+|+|||..+.
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 468999999999997654
No 400
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.19 E-value=0.069 Score=46.87 Aligned_cols=52 Identities=19% Similarity=0.216 Sum_probs=33.1
Q ss_pred CchhHHHHHHHH-HcCCCEEEEccCCCCchhhhhccc-----cccCCcEEEEcchHHH
Q 037567 14 FRPYQKDVIQRI-IEKRDCLVVMATGSGKSLCYQLPP-----LVTGKTALVVSPLISL 65 (374)
Q Consensus 14 ~~~~Q~~~~~~~-~~~~~~l~~a~tGsGKT~~~~l~~-----~~~~~~~lil~P~~~l 65 (374)
+.+.|.+.+... ..++++++.|+||||||......+ .....+++++-.+.++
T Consensus 133 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 133 MTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 556677777654 457789999999999995432111 1234566666666554
No 401
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.18 E-value=0.21 Score=39.60 Aligned_cols=30 Identities=30% Similarity=0.319 Sum_probs=18.6
Q ss_pred EEEEccCCCCchhhhhccc---cccCCcEEEEc
Q 037567 31 CLVVMATGSGKSLCYQLPP---LVTGKTALVVS 60 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~~l~~---~~~~~~~lil~ 60 (374)
+++.|++|+|||......+ ...+.+++++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5789999999996643222 22355555443
No 402
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.14 E-value=0.12 Score=48.97 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=13.8
Q ss_pred CEEEEccCCCCchhhhh
Q 037567 30 DCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~ 46 (374)
-.++.||+|+|||.++.
T Consensus 40 a~Lf~Gp~G~GKTt~A~ 56 (527)
T PRK14969 40 AYLFTGTRGVGKTTLAR 56 (527)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 35899999999996643
No 403
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=94.11 E-value=0.075 Score=55.68 Aligned_cols=61 Identities=18% Similarity=0.161 Sum_probs=46.8
Q ss_pred CCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccc---cc---cCCcEEEEcchHHHHHHHHHHHHH
Q 037567 13 VFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPP---LV---TGKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~---~~---~~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
++++-|.+++.. .+++++|.|..|||||.+..--+ +. ...++++++=|++.+.++...+..
T Consensus 1 ~~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~ 67 (1232)
T TIGR02785 1 QWTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEE 67 (1232)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHH
Confidence 368889999973 68899999999999996643221 21 234699999999999888877765
No 404
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=94.11 E-value=0.057 Score=46.13 Aligned_cols=40 Identities=8% Similarity=0.098 Sum_probs=26.3
Q ss_pred HHHHHHHcCCCEEEEccCCCCchhhhhccccccCCcEEEE
Q 037567 20 DVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVV 59 (374)
Q Consensus 20 ~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil 59 (374)
++...+..+.++++.||+|+|||..+...+...+.+++.+
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i 52 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLI 52 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 3444455688999999999999966543332335555554
No 405
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.07 E-value=0.12 Score=48.29 Aligned_cols=52 Identities=25% Similarity=0.214 Sum_probs=36.3
Q ss_pred CCCEEEEccCCCCchhhhh------ccccc---cCCcEEEEcchHHHHHHHHHHHHHcCCc
Q 037567 28 KRDCLVVMATGSGKSLCYQ------LPPLV---TGKTALVVSPLISLMQDQVMSLKQRGIN 79 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~------l~~~~---~~~~~lil~P~~~l~~q~~~~~~~~~~~ 79 (374)
++-.+|.|..|||||.+++ +--.. ..+.+||+.|.+....-..+-+=.+|..
T Consensus 226 ~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLPeLGe~ 286 (747)
T COG3973 226 NKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLPELGEE 286 (747)
T ss_pred CCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhchhhccC
Confidence 5667899999999996643 22111 3556999999998887666665555543
No 406
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.01 E-value=0.41 Score=46.49 Aligned_cols=133 Identities=20% Similarity=0.237 Sum_probs=73.5
Q ss_pred chhHHH---HHHHHHcCC--CEEEEccCCCCchhhhh---cccccc--CCcEEEEcchHHHHHHHHHHH----HHcCCce
Q 037567 15 RPYQKD---VIQRIIEKR--DCLVVMATGSGKSLCYQ---LPPLVT--GKTALVVSPLISLMQDQVMSL----KQRGINA 80 (374)
Q Consensus 15 ~~~Q~~---~~~~~~~~~--~~l~~a~tGsGKT~~~~---l~~~~~--~~~~lil~P~~~l~~q~~~~~----~~~~~~~ 80 (374)
+.-|.+ .+..+++.+ -+++.|+=|=|||.+.= ..+.+. ..+++|.+|+.+-++..++-. ...|.+.
T Consensus 213 T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~~ 292 (758)
T COG1444 213 TEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFLGYKR 292 (758)
T ss_pred ChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHhCCcc
Confidence 344555 444555543 46789999999995432 122222 358999999988777655543 3344443
Q ss_pred EEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcC
Q 037567 81 EFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLL 160 (374)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~ 160 (374)
.+....... ..........|=+.+|+... ..-+++|||||-.+.- ..+.++..
T Consensus 293 ~v~~d~~g~---~~~~~~~~~~i~y~~P~~a~------------~~~DllvVDEAAaIpl---------plL~~l~~--- 345 (758)
T COG1444 293 KVAPDALGE---IREVSGDGFRIEYVPPDDAQ------------EEADLLVVDEAAAIPL---------PLLHKLLR--- 345 (758)
T ss_pred ccccccccc---eeeecCCceeEEeeCcchhc------------ccCCEEEEehhhcCCh---------HHHHHHHh---
Confidence 222211111 01111122345566665432 1147999999986542 23333333
Q ss_pred CCCeeEEEeecCcc
Q 037567 161 GVPFVALTATATEK 174 (374)
Q Consensus 161 ~~~~i~~SaT~~~~ 174 (374)
..+.++||.|....
T Consensus 346 ~~~rv~~sTTIhGY 359 (758)
T COG1444 346 RFPRVLFSTTIHGY 359 (758)
T ss_pred hcCceEEEeeeccc
Confidence 55789999996653
No 407
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.01 E-value=0.29 Score=45.41 Aligned_cols=19 Identities=21% Similarity=0.155 Sum_probs=14.9
Q ss_pred CCCEEEEccCCCCchhhhh
Q 037567 28 KRDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~ 46 (374)
++-+.+.||+|+|||.+..
T Consensus 256 g~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTA 274 (484)
T ss_pred CcEEEEECCCCccHHHHHH
Confidence 3456789999999997654
No 408
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=94.00 E-value=0.23 Score=43.79 Aligned_cols=140 Identities=13% Similarity=0.088 Sum_probs=71.5
Q ss_pred CCchhHHHHHHHHHcCCCE------EEEccCCCCchhhhhccccccCCcEEEEcchH-----HHHHHHHHHHHHcCCceE
Q 037567 13 VFRPYQKDVIQRIIEKRDC------LVVMATGSGKSLCYQLPPLVTGKTALVVSPLI-----SLMQDQVMSLKQRGINAE 81 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~~~~------l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~-----~l~~q~~~~~~~~~~~~~ 81 (374)
..+..|...+..++-.++. ++.|.+|||||..-.-.....+...+++.+.. -+.++......
T Consensus 9 ~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~------- 81 (438)
T KOG2543|consen 9 PCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQ------- 81 (438)
T ss_pred cchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhc-------
Confidence 4678899999988876543 88999999999763322222345566666642 22222222221
Q ss_pred EcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHH--HH-HhcCccEEEEeccchhhcccCcchHHHHHHHHHHHh
Q 037567 82 FLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS--KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTF 158 (374)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~--~~-~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~ 158 (374)
.... +.. -+=++.+.+.++++.... .. ....--++|+|.++.+-+.+...-..+-.+.++...
T Consensus 82 -~~d~--dg~-----------~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~ 147 (438)
T KOG2543|consen 82 -LADK--DGD-----------KVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNE 147 (438)
T ss_pred -cCCC--chh-----------hhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCC
Confidence 0000 000 000111122222111111 11 111234799999999987665433333334333332
Q ss_pred cCCCCeeEEEeecCccc
Q 037567 159 LLGVPFVALTATATEKV 175 (374)
Q Consensus 159 ~~~~~~i~~SaT~~~~~ 175 (374)
+.-.+.+|+++.+..
T Consensus 148 --~~i~iils~~~~e~~ 162 (438)
T KOG2543|consen 148 --PTIVIILSAPSCEKQ 162 (438)
T ss_pred --CceEEEEeccccHHH
Confidence 455788888887754
No 409
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=93.99 E-value=0.5 Score=41.89 Aligned_cols=40 Identities=13% Similarity=0.077 Sum_probs=23.9
Q ss_pred cCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCeeEEEee
Q 037567 125 AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTAT 170 (374)
Q Consensus 125 ~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 170 (374)
...+++||||+|.+..... ..+.+..+..++.-++.++++
T Consensus 109 ~~~kvviI~~a~~~~~~a~------NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAA------NSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred cCceEEEeehHhhhCHHHH------HHHHHHhcCCCCCceEEEEeC
Confidence 4568999999999865221 344445554444444445444
No 410
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.93 E-value=0.12 Score=45.10 Aligned_cols=52 Identities=25% Similarity=0.429 Sum_probs=32.5
Q ss_pred CchhHHHHHHHHH-cCCCEEEEccCCCCchhhhh--ccccc---cCCcEEEEcchHHH
Q 037567 14 FRPYQKDVIQRII-EKRDCLVVMATGSGKSLCYQ--LPPLV---TGKTALVVSPLISL 65 (374)
Q Consensus 14 ~~~~Q~~~~~~~~-~~~~~l~~a~tGsGKT~~~~--l~~~~---~~~~~lil~P~~~l 65 (374)
+.+-|.+.+..+. .+++++++|+||||||...- +..+. ...+++.+-...++
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhh
Confidence 4444555555444 46789999999999996532 22221 24667777776665
No 411
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.92 E-value=0.27 Score=43.86 Aligned_cols=52 Identities=13% Similarity=0.089 Sum_probs=30.1
Q ss_pred CCCEEEEccCCCCchhhhhccc---cccCCcEEEE-cchH--HHHHHHHHHHHHcCCc
Q 037567 28 KRDCLVVMATGSGKSLCYQLPP---LVTGKTALVV-SPLI--SLMQDQVMSLKQRGIN 79 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~---~~~~~~~lil-~P~~--~l~~q~~~~~~~~~~~ 79 (374)
++.+++.||+|+|||.+....+ ..++.++.++ +.+- .-+.||.......+..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvp 263 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVE 263 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCC
Confidence 4456899999999996543222 2245555443 3332 2356766665555543
No 412
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.91 E-value=0.52 Score=42.29 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=15.1
Q ss_pred CCEEEEccCCCCchhhhh
Q 037567 29 RDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~ 46 (374)
.++++.|+||+|||.+.-
T Consensus 43 ~n~~iyG~~GTGKT~~~~ 60 (366)
T COG1474 43 SNIIIYGPTGTGKTATVK 60 (366)
T ss_pred ccEEEECCCCCCHhHHHH
Confidence 468999999999997643
No 413
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=93.87 E-value=0.5 Score=39.31 Aligned_cols=51 Identities=20% Similarity=0.206 Sum_probs=35.7
Q ss_pred CCCEEEEccCCCCchhhhh-c--cccccCCcEEEEcchHHHHHHHHHHHHHcCCc
Q 037567 28 KRDCLVVMATGSGKSLCYQ-L--PPLVTGKTALVVSPLISLMQDQVMSLKQRGIN 79 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~-l--~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 79 (374)
+.-+++.|++|+|||...+ + ..+.++.+++++.-. +-.++..+.+..++..
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e-~~~~~l~~~~~~~~~~ 69 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE-EREERILGYAKSKGWD 69 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC-CCHHHHHHHHHHcCCC
Confidence 4567899999999995432 2 233457778887665 4577788888877654
No 414
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.86 E-value=0.28 Score=47.14 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=14.2
Q ss_pred CEEEEccCCCCchhhhh
Q 037567 30 DCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~ 46 (374)
..+++||+|+|||.++.
T Consensus 40 a~Lf~Gp~GvGKttlA~ 56 (620)
T PRK14954 40 GYIFSGLRGVGKTTAAR 56 (620)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47899999999997653
No 415
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.86 E-value=0.14 Score=49.30 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=13.8
Q ss_pred CEEEEccCCCCchhhhh
Q 037567 30 DCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~ 46 (374)
.+++.||+|+|||.++.
T Consensus 40 a~Lf~Gp~G~GKTtlA~ 56 (585)
T PRK14950 40 AYLFTGPRGVGKTSTAR 56 (585)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 35899999999996643
No 416
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=93.82 E-value=0.065 Score=45.53 Aligned_cols=107 Identities=14% Similarity=0.200 Sum_probs=51.7
Q ss_pred HHHHHHHcCC----C-EEEEccCCCCchhhh-hccc---cc-----cCCcEEEEcchHHHHHHHHHHH-HHcCCceEEcC
Q 037567 20 DVIQRIIEKR----D-CLVVMATGSGKSLCY-QLPP---LV-----TGKTALVVSPLISLMQDQVMSL-KQRGINAEFLG 84 (374)
Q Consensus 20 ~~~~~~~~~~----~-~l~~a~tGsGKT~~~-~l~~---~~-----~~~~~lil~P~~~l~~q~~~~~-~~~~~~~~~~~ 84 (374)
..++.++.|. . .=++|++|+|||-.. .+++ +. .+.+++|+.-....-.+-..++ ++++..
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~----- 99 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLD----- 99 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS------
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccc-----
Confidence 4666776542 2 238999999999332 2221 11 2556888754332222211111 222211
Q ss_pred CCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhh
Q 037567 85 SAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCIS 139 (374)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~ 139 (374)
..+ ....-.-.-+.+.+.+..++..........++++||||-+-.+.
T Consensus 100 ----~~~----~l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalf 146 (256)
T PF08423_consen 100 ----PEE----ILDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAALF 146 (256)
T ss_dssp ----HHH----HHHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHH
T ss_pred ----cch----hhhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHHHH
Confidence 111 11110112233444444444444344445689999999987764
No 417
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.79 E-value=0.068 Score=47.20 Aligned_cols=40 Identities=18% Similarity=0.245 Sum_probs=25.8
Q ss_pred HcCCCEEEEccCCCCchhhh--hccccccCCcEEEEcchHHH
Q 037567 26 IEKRDCLVVMATGSGKSLCY--QLPPLVTGKTALVVSPLISL 65 (374)
Q Consensus 26 ~~~~~~l~~a~tGsGKT~~~--~l~~~~~~~~~lil~P~~~l 65 (374)
..+++++++|+||||||... ++..+....+++.+-.+.++
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El 199 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREI 199 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCcc
Confidence 35789999999999999542 23333345566665444443
No 418
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=93.78 E-value=0.32 Score=47.36 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=21.1
Q ss_pred CCEEEEccCCCCchhhhhccccccCCcEEEEcc
Q 037567 29 RDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P 61 (374)
+.+++.+|+|+|||...-..+-..+...+.+.+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~ 218 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISG 218 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCEEEEeh
Confidence 468999999999997654333333444444433
No 419
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.73 E-value=0.22 Score=49.14 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=12.3
Q ss_pred EEEccCCCCchhhh
Q 037567 32 LVVMATGSGKSLCY 45 (374)
Q Consensus 32 l~~a~tGsGKT~~~ 45 (374)
+|.|+||+|||.+.
T Consensus 785 YIyG~PGTGKTATV 798 (1164)
T PTZ00112 785 YISGMPGTGKTATV 798 (1164)
T ss_pred EEECCCCCCHHHHH
Confidence 59999999999764
No 420
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.71 E-value=0.32 Score=45.91 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=57.9
Q ss_pred CCCEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhhhhhhhcCCeeEEEEc
Q 037567 28 KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMT 107 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T 107 (374)
.+.+++.+|+|+|||+.+-..+-. ...-++-++--+|..-|+-+-++.
T Consensus 468 pkGVLlyGPPGC~KT~lAkalAne-~~~nFlsvkgpEL~sk~vGeSEr~------------------------------- 515 (693)
T KOG0730|consen 468 PKGVLLYGPPGCGKTLLAKALANE-AGMNFLSVKGPELFSKYVGESERA------------------------------- 515 (693)
T ss_pred CceEEEECCCCcchHHHHHHHhhh-hcCCeeeccCHHHHHHhcCchHHH-------------------------------
Confidence 478999999999999865322222 233344445445554443322111
Q ss_pred CcccccCchhhHHHHHhcCccEEEEeccchhhc-c-cCcchHHHHHHHHHHHhcC----CCCeeEEEeecCcccH
Q 037567 108 PEKACIIPISFWSKLLKAGVCLFAVDEAHCISE-W-GHDFRLEYKQLDKLRTFLL----GVPFVALTATATEKVR 176 (374)
Q Consensus 108 ~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~-~-~~~~~~~~~~~~~~~~~~~----~~~~i~~SaT~~~~~~ 176 (374)
++..+.........++++||++.+.. . |......-+.++.++..+. ...++..-||-.+...
T Consensus 516 -------ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~I 583 (693)
T KOG0730|consen 516 -------IREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMI 583 (693)
T ss_pred -------HHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhc
Confidence 11122233333447899999999853 2 1111112233333333332 3467888888776544
No 421
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.69 E-value=0.3 Score=43.48 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=15.5
Q ss_pred CCEEEEccCCCCchhhhh
Q 037567 29 RDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~ 46 (374)
+++++.+|+|+|||+.+-
T Consensus 385 RNilfyGPPGTGKTm~Ar 402 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFAR 402 (630)
T ss_pred hheeeeCCCCCCchHHHH
Confidence 588999999999998653
No 422
>PHA00350 putative assembly protein
Probab=93.67 E-value=0.66 Score=41.85 Aligned_cols=16 Identities=31% Similarity=0.092 Sum_probs=13.1
Q ss_pred EEEEccCCCCchhhhh
Q 037567 31 CLVVMATGSGKSLCYQ 46 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~~ 46 (374)
.++.|.+|||||+.+.
T Consensus 4 ~l~tG~pGSGKT~~aV 19 (399)
T PHA00350 4 YAIVGRPGSYKSYEAV 19 (399)
T ss_pred EEEecCCCCchhHHHH
Confidence 4789999999997654
No 423
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=93.61 E-value=0.1 Score=50.48 Aligned_cols=56 Identities=21% Similarity=0.213 Sum_probs=43.8
Q ss_pred CCEEEEccCCCCchhhhhcccccc-CCcEEEEcchHHHHHHHHHHHHHcCCceEEcC
Q 037567 29 RDCLVVMATGSGKSLCYQLPPLVT-GKTALVVSPLISLMQDQVMSLKQRGINAEFLG 84 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~~~~~-~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 84 (374)
.++++.||||||||..+.+|.+.. ...++|+=|.-++........++.|-.+.++.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~~gS~VV~DpKGE~~~~Ta~~R~~~G~~V~~Fn 196 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTFKGSVIALDVKGELFELTSRARKASGDAVFKFA 196 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcCCCCEEEEeCCchHHHHHHHHHHhCCCEEEEec
Confidence 478999999999999998886654 46788888888888877777777776665443
No 424
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=93.61 E-value=0.43 Score=48.19 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
.++.++.||+|+|||...
T Consensus 194 ~~n~lL~G~pGvGKT~l~ 211 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIV 211 (852)
T ss_pred CCceEEEcCCCCCHHHHH
Confidence 358899999999999654
No 425
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.60 E-value=0.3 Score=38.43 Aligned_cols=50 Identities=14% Similarity=0.046 Sum_probs=32.9
Q ss_pred HhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCeeEEEeecCccc
Q 037567 123 LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175 (374)
Q Consensus 123 ~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~ 175 (374)
....+++||+||+=...+.|.-.. ..+..+....|...-+.+|+...+..
T Consensus 94 ~~~~~DlvVLDEi~~A~~~gli~~---~~v~~lL~~rp~~~evVlTGR~~p~~ 143 (173)
T TIGR00708 94 ADPELDLVLLDELTYALKYGYLDV---EEVVEALQERPGHQHVIITGRGCPQD 143 (173)
T ss_pred hcCCCCEEEehhhHHHHHCCCcCH---HHHHHHHHhCCCCCEEEEECCCCCHH
Confidence 346799999999988777665332 23444455555555788888766543
No 426
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=93.60 E-value=0.16 Score=40.97 Aligned_cols=16 Identities=31% Similarity=0.335 Sum_probs=13.4
Q ss_pred CEEEEccCCCCchhhh
Q 037567 30 DCLVVMATGSGKSLCY 45 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~ 45 (374)
..++.||+|+|||..+
T Consensus 16 ~~L~~G~~G~gkt~~a 31 (188)
T TIGR00678 16 AYLFAGPEGVGKELLA 31 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999554
No 427
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.58 E-value=0.94 Score=41.36 Aligned_cols=57 Identities=14% Similarity=0.116 Sum_probs=31.3
Q ss_pred hcCccEEEEeccchhhcccCcchHHHHHHHHHHHhc-CCCCeeEEEeecCcccHHHHHHhcC
Q 037567 124 KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFL-LGVPFVALTATATEKVRIDIINSLK 184 (374)
Q Consensus 124 ~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~SaT~~~~~~~~~~~~~~ 184 (374)
+.+.+.+++|.+-+. .........+..+.... +....+.+|||........+...+.
T Consensus 267 l~~~d~VLIDTaGrs----qrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~ 324 (420)
T PRK14721 267 LRGKHMVLIDTVGMS----QRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQ 324 (420)
T ss_pred hcCCCEEEecCCCCC----cchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhc
Confidence 456678888886321 11111223333332221 2345788999988877766666554
No 428
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.57 E-value=0.44 Score=46.02 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=14.5
Q ss_pred CCEEEEccCCCCchhhhh
Q 037567 29 RDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~ 46 (374)
..+++.||.|+|||.++.
T Consensus 39 ~a~Lf~Gp~G~GKttlA~ 56 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSAR 56 (620)
T ss_pred ceEEEECCCCCChHHHHH
Confidence 356899999999996643
No 429
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=93.54 E-value=0.093 Score=43.15 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=23.1
Q ss_pred CCCEEEEccCCCCchhhhhccc---cccCCcEEEEcch
Q 037567 28 KRDCLVVMATGSGKSLCYQLPP---LVTGKTALVVSPL 62 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~---~~~~~~~lil~P~ 62 (374)
+.-+.+.||+|+|||...+..+ ...+.+++++.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 4556899999999996543222 2345667776554
No 430
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.53 E-value=0.13 Score=41.42 Aligned_cols=33 Identities=30% Similarity=0.495 Sum_probs=25.3
Q ss_pred CCCchhHHHHHHHHHc-CCCEEEEccCCCCchhh
Q 037567 12 SVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLC 44 (374)
Q Consensus 12 ~~~~~~Q~~~~~~~~~-~~~~l~~a~tGsGKT~~ 44 (374)
..+.+-|.+.+....+ +..+++.+|||||||..
T Consensus 8 g~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 8 GTFSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 3466777777776554 67889999999999964
No 431
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.44 E-value=0.59 Score=43.14 Aligned_cols=45 Identities=18% Similarity=0.009 Sum_probs=26.7
Q ss_pred CCCEEEEccCCCCchhhhhccc----cccCCcEEEEcchHHHHHHHHHHH
Q 037567 28 KRDCLVVMATGSGKSLCYQLPP----LVTGKTALVVSPLISLMQDQVMSL 73 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~----~~~~~~~lil~P~~~l~~q~~~~~ 73 (374)
|.-+++.|+||+|||...+-.+ ...+.++++++.- .-..|+...+
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlE-m~~~~l~~Rl 242 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLE-MSAEQLGERL 242 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC-CCHHHHHHHH
Confidence 4456889999999995443222 2356778887632 2333444443
No 432
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.36 E-value=0.65 Score=42.43 Aligned_cols=31 Identities=26% Similarity=0.275 Sum_probs=19.6
Q ss_pred EEEEccCCCCchhhhh-ccc-c-ccCCcEEEEcc
Q 037567 31 CLVVMATGSGKSLCYQ-LPP-L-VTGKTALVVSP 61 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~~-l~~-~-~~~~~~lil~P 61 (374)
++++|++|+|||.+.. ++. + .++.++++++-
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~ 136 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCA 136 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 5789999999996643 221 1 23556665543
No 433
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=93.26 E-value=0.71 Score=46.51 Aligned_cols=28 Identities=21% Similarity=0.456 Sum_probs=20.7
Q ss_pred HHHHHHHHHc------CCCEEEEccCCCCchhhh
Q 037567 18 QKDVIQRIIE------KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 18 Q~~~~~~~~~------~~~~l~~a~tGsGKT~~~ 45 (374)
|..-+..+.+ ..+.++.||+|+|||...
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVV 225 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHH
Confidence 5555655543 358899999999999654
No 434
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.26 E-value=0.46 Score=43.85 Aligned_cols=116 Identities=15% Similarity=0.148 Sum_probs=60.3
Q ss_pred CEEEEccCCCCchhhhhccccccCCc-EEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhhhhhhhcCCeeEEEEcC
Q 037567 30 DCLVVMATGSGKSLCYQLPPLVTGKT-ALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTP 108 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~l~~~~~~~~-~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~ 108 (374)
.+++.+|+|||||..+.-.++.+..+ +=++.|..-.... .....
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~s--------------------EsaKc--------------- 584 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLS--------------------ESAKC--------------- 584 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCcc--------------------HHHHH---------------
Confidence 57999999999997665555555544 3444554211110 00000
Q ss_pred cccccCchhhHHHHHhcCccEEEEeccchhhcc---cCcchHHHH-HHHHHHHhc-CCCCeeEEEeecCcccHHHHHHhc
Q 037567 109 EKACIIPISFWSKLLKAGVCLFAVDEAHCISEW---GHDFRLEYK-QLDKLRTFL-LGVPFVALTATATEKVRIDIINSL 183 (374)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~---~~~~~~~~~-~~~~~~~~~-~~~~~i~~SaT~~~~~~~~~~~~~ 183 (374)
..+.........+...++|+|+..++.+| |..+..... .+.-++... |..+.++.-+|-+.. .+++.+
T Consensus 585 ----~~i~k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~---~vL~~m 657 (744)
T KOG0741|consen 585 ----AHIKKIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRR---EVLQEM 657 (744)
T ss_pred ----HHHHHHHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHH---HHHHHc
Confidence 00112223444567789999999999885 333332222 222223322 334455555665543 446655
Q ss_pred CCCC
Q 037567 184 KLKN 187 (374)
Q Consensus 184 ~~~~ 187 (374)
++.+
T Consensus 658 ~i~~ 661 (744)
T KOG0741|consen 658 GILD 661 (744)
T ss_pred CHHH
Confidence 5443
No 435
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=93.26 E-value=0.5 Score=40.34 Aligned_cols=35 Identities=17% Similarity=0.114 Sum_probs=23.1
Q ss_pred CCCEEEEccCCCCchhhhhcc---cccc-CCcEEEEcch
Q 037567 28 KRDCLVVMATGSGKSLCYQLP---PLVT-GKTALVVSPL 62 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~---~~~~-~~~~lil~P~ 62 (374)
+.-+++.|.||.|||..++-. +... +.+|++++.-
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlE 57 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLE 57 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCC
Confidence 345688999999999654322 2223 5788888874
No 436
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.23 E-value=0.4 Score=43.76 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=14.7
Q ss_pred CCEEEEccCCCCchhhh
Q 037567 29 RDCLVVMATGSGKSLCY 45 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~ 45 (374)
.++++.||+|+|||.+.
T Consensus 56 ~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56899999999999764
No 437
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=93.15 E-value=0.077 Score=55.44 Aligned_cols=94 Identities=22% Similarity=0.313 Sum_probs=75.8
Q ss_pred cEEEEecchhHHHHHHHHHHHcC-CceeeeecCCC-----------hHHHHHHHHhhhcCCeeEEEEeccccccccccCc
Q 037567 230 SIIVYCMTIKDVEEISKALKQLG-VKAGTYHGQMG-----------SKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297 (374)
Q Consensus 230 ~~lVf~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~-----------~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~ 297 (374)
..++|++....+....+.+++.. ..+..+.|... ...+.+++..|......+|++|.++.+|+|.+.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 46899999999998888887642 23333444322 2235577888888999999999999999999999
Q ss_pred cEEEEECCCCChhHHHHhhccCCCCC
Q 037567 298 RHVIHYGCPKTLESYYQESGRCGRDG 323 (374)
Q Consensus 298 ~~vi~~~~p~s~~~~~Q~~GR~~R~~ 323 (374)
+.++.++.|.....|+|..||+.+..
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999997753
No 438
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=93.11 E-value=0.32 Score=42.70 Aligned_cols=38 Identities=13% Similarity=0.055 Sum_probs=23.7
Q ss_pred cCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCeeEEE
Q 037567 125 AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALT 168 (374)
Q Consensus 125 ~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 168 (374)
...+++|||++|.+...+. ..+.+..+..++..++++|
T Consensus 123 ~~~kVvII~~ae~m~~~aa------NaLLK~LEEPp~~~fILi~ 160 (314)
T PRK07399 123 APRKVVVIEDAETMNEAAA------NALLKTLEEPGNGTLILIA 160 (314)
T ss_pred CCceEEEEEchhhcCHHHH------HHHHHHHhCCCCCeEEEEE
Confidence 4578999999999865222 4455555655544444443
No 439
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=93.09 E-value=0.17 Score=48.79 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=43.8
Q ss_pred CCEEEEccCCCCchhhhhcccccc-CCcEEEEcchHHHHHHHHHHHHHcCCceEEcC
Q 037567 29 RDCLVVMATGSGKSLCYQLPPLVT-GKTALVVSPLISLMQDQVMSLKQRGINAEFLG 84 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~~~~~-~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 84 (374)
.++++.||||+|||..+.+|.+.+ ...++|+=|..++...+....++.|.++.++.
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnLL~~~gS~VV~DpKgEl~~~Ta~~R~~~G~~V~vfd 281 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTALKWGGPLVVLDPSTEVAPMVSEHRRDAGREVIVLD 281 (641)
T ss_pred ceEEEEeCCCCCccceEehhhhhcCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEEe
Confidence 478999999999999988887654 55677777888988877777777776665543
No 440
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=92.88 E-value=0.4 Score=38.39 Aligned_cols=51 Identities=14% Similarity=0.083 Sum_probs=33.7
Q ss_pred HhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCeeEEEeecCcccH
Q 037567 123 LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176 (374)
Q Consensus 123 ~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~ 176 (374)
....+++||+||+=...+.|.-.. ..+..+....|...-+.+|+...+...
T Consensus 112 ~~~~ydlvVLDEi~~Al~~gli~~---eevi~~L~~rp~~~evVlTGR~~p~~L 162 (191)
T PRK05986 112 ADESYDLVVLDELTYALKYGYLDV---EEVLEALNARPGMQHVVITGRGAPREL 162 (191)
T ss_pred hCCCCCEEEEehhhHHHHCCCccH---HHHHHHHHcCCCCCEEEEECCCCCHHH
Confidence 346789999999988777665332 334444455555667888887666543
No 441
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=92.87 E-value=1.2 Score=39.35 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=13.9
Q ss_pred CEEEEccCCCCchhhh
Q 037567 30 DCLVVMATGSGKSLCY 45 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~ 45 (374)
++++.||+|+|||...
T Consensus 40 ~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 40 HLLFAGPPGTGKTTAA 55 (319)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5899999999999654
No 442
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=92.85 E-value=0.049 Score=43.33 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=25.7
Q ss_pred CCeeEEEEcCcccccCchhhHHHH--HhcCccEEEEeccchhhc
Q 037567 99 GYFQLLFMTPEKACIIPISFWSKL--LKAGVCLFAVDEAHCISE 140 (374)
Q Consensus 99 ~~~~i~i~T~~~l~~~~~~~~~~~--~~~~~~~vviDE~h~~~~ 140 (374)
...+|+|+++..+..-... ... ....-.+|||||||.+.+
T Consensus 118 ~~adivi~~y~yl~~~~~~--~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPSIR--KSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GG-SEEEEETHHHHSHHHH--HHHCT--CCCEEEEETTGGGCGG
T ss_pred ccCCEEEeCHHHHhhHHHH--hhhccccccCcEEEEecccchHH
Confidence 3469999999877653221 222 123446899999999876
No 443
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=92.80 E-value=0.34 Score=43.75 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=19.2
Q ss_pred EEEccCCCCchhhhhcccc----ccCC-cEEEEcchHHHHHH
Q 037567 32 LVVMATGSGKSLCYQLPPL----VTGK-TALVVSPLISLMQD 68 (374)
Q Consensus 32 l~~a~tGsGKT~~~~l~~~----~~~~-~~lil~P~~~l~~q 68 (374)
++.++.|+|||......++ .... +.++++|+..-+.+
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~ 42 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIASTYRQARD 42 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEESSHHHHH
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecCHHHHHH
Confidence 4788999999966443322 2332 44444476655554
No 444
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.75 E-value=0.18 Score=47.30 Aligned_cols=52 Identities=21% Similarity=0.229 Sum_probs=37.6
Q ss_pred CCCEEEEccCCCCchhhhhccc---ccc-CCcEEEEcchHHHHHHHHHHHHHcCCce
Q 037567 28 KRDCLVVMATGSGKSLCYQLPP---LVT-GKTALVVSPLISLMQDQVMSLKQRGINA 80 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~---~~~-~~~~lil~P~~~l~~q~~~~~~~~~~~~ 80 (374)
+..+++.+++|+|||..++--+ +.+ +.++++++-- +-.+++.+.+.++|+..
T Consensus 21 g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e-E~~~~l~~~~~~~G~~~ 76 (484)
T TIGR02655 21 GRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE-ESPQDIIKNARSFGWDL 76 (484)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe-cCHHHHHHHHHHcCCCH
Confidence 5678999999999996544222 233 6788888754 66778888888887653
No 445
>PRK05595 replicative DNA helicase; Provisional
Probab=92.71 E-value=0.4 Score=44.51 Aligned_cols=44 Identities=18% Similarity=0.102 Sum_probs=26.5
Q ss_pred CCEEEEccCCCCchhhhhcc----ccccCCcEEEEcchHHHHHHHHHHH
Q 037567 29 RDCLVVMATGSGKSLCYQLP----PLVTGKTALVVSPLISLMQDQVMSL 73 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~----~~~~~~~~lil~P~~~l~~q~~~~~ 73 (374)
.-+++.|.||+|||...+-. +..++.+++++..- .-..|+...+
T Consensus 202 ~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlE-ms~~~l~~R~ 249 (444)
T PRK05595 202 DMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLE-MSKEQLAYKL 249 (444)
T ss_pred cEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecC-CCHHHHHHHH
Confidence 34567888999999654322 22346778887664 2344444443
No 446
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.68 E-value=0.43 Score=46.04 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=24.6
Q ss_pred cCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCeeEEEeec
Q 037567 125 AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATA 171 (374)
Q Consensus 125 ~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 171 (374)
...+++||||+|.+.... ...+.+..+..+..-++.+.+|-
T Consensus 120 ~~~KVvIIdea~~Ls~~a------~naLLK~LEepp~~tifIL~tt~ 160 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAA------FNAFLKTLEEPPSYAIFILATTE 160 (614)
T ss_pred CCcEEEEEECcccCCHHH------HHHHHHHHhCCCCCeEEEEEeCC
Confidence 457899999999986422 13444555544444445555553
No 447
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.66 E-value=0.49 Score=43.35 Aligned_cols=52 Identities=27% Similarity=0.259 Sum_probs=29.9
Q ss_pred EEEEccCCCCchhhhhccc--c--ccCCcEEEE-cch-H-HHHHHHHHHHHHcCCceEE
Q 037567 31 CLVVMATGSGKSLCYQLPP--L--VTGKTALVV-SPL-I-SLMQDQVMSLKQRGINAEF 82 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~~l~~--~--~~~~~~lil-~P~-~-~l~~q~~~~~~~~~~~~~~ 82 (374)
+++++++|+|||.+..-.+ + ..+.+++++ +.+ + ....|+.......+.....
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~ 160 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA 160 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEe
Confidence 5789999999997643222 1 234555443 332 2 3345555555666665444
No 448
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=92.65 E-value=0.47 Score=39.52 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=15.6
Q ss_pred CCEEEEccCCCCchhhhh
Q 037567 29 RDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~ 46 (374)
+.+++.+|+|+|||+.+-
T Consensus 206 KGvLmYGPPGTGKTlmAR 223 (424)
T KOG0652|consen 206 KGVLMYGPPGTGKTLMAR 223 (424)
T ss_pred CceEeeCCCCCcHHHHHH
Confidence 678999999999998653
No 449
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=92.64 E-value=0.44 Score=44.90 Aligned_cols=16 Identities=31% Similarity=0.316 Sum_probs=13.3
Q ss_pred EEEEccCCCCchhhhh
Q 037567 31 CLVVMATGSGKSLCYQ 46 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~~ 46 (374)
.+++||.|+|||.++.
T Consensus 39 yLf~Gp~G~GKTt~Ar 54 (535)
T PRK08451 39 YLFSGLRGSGKTSSAR 54 (535)
T ss_pred EEEECCCCCcHHHHHH
Confidence 4899999999996643
No 450
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.61 E-value=0.56 Score=45.96 Aligned_cols=52 Identities=13% Similarity=0.104 Sum_probs=29.2
Q ss_pred CCEEEEccCCCCchhhhhccc--c--ccC-CcEEEE-cchH--HHHHHHHHHHHHcCCce
Q 037567 29 RDCLVVMATGSGKSLCYQLPP--L--VTG-KTALVV-SPLI--SLMQDQVMSLKQRGINA 80 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~~--~--~~~-~~~lil-~P~~--~l~~q~~~~~~~~~~~~ 80 (374)
+-+.+.||+|+|||.+....+ + ..+ +++.++ +.+- ...+|+.......++..
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv 245 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPV 245 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCc
Confidence 346789999999996654322 1 233 344443 3322 24566666555555543
No 451
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=92.58 E-value=0.17 Score=42.16 Aligned_cols=36 Identities=17% Similarity=0.080 Sum_probs=23.3
Q ss_pred CCCEEEEccCCCCchhhhhccc---cccC------CcEEEEcchH
Q 037567 28 KRDCLVVMATGSGKSLCYQLPP---LVTG------KTALVVSPLI 63 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~---~~~~------~~~lil~P~~ 63 (374)
+.-..+.||+|+|||...+..+ ...+ .+++++....
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 4567899999999996543222 2233 6677766543
No 452
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.58 E-value=0.3 Score=45.28 Aligned_cols=88 Identities=15% Similarity=0.072 Sum_probs=50.9
Q ss_pred CCCEEEEccCCCCchhhhhcc---ccccCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhhhhhhhcCCeeEE
Q 037567 28 KRDCLVVMATGSGKSLCYQLP---PLVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLL 104 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~---~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 104 (374)
+.-+++.+++|+|||...+.. +...+.+++++..- +...|+.....+++.... ++.
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~E-Es~~qi~~ra~rlg~~~~--------------------~l~ 152 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGE-ESLQQIKMRAIRLGLPEP--------------------NLY 152 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECc-CCHHHHHHHHHHcCCChH--------------------HeE
Confidence 345688999999999654322 22345678888764 445677666666553211 111
Q ss_pred EEcCcccccCchhhHHHHHhcCccEEEEeccchhhc
Q 037567 105 FMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISE 140 (374)
Q Consensus 105 i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~ 140 (374)
+.....+ ......+...+.+++|||....+..
T Consensus 153 ~~~e~~~----~~I~~~i~~~~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 153 VLSETNW----EQICANIEEENPQACVIDSIQTLYS 184 (454)
T ss_pred EcCCCCH----HHHHHHHHhcCCcEEEEecchhhcc
Confidence 2111111 1222333345788999999998753
No 453
>PRK08840 replicative DNA helicase; Provisional
Probab=92.54 E-value=0.99 Score=42.01 Aligned_cols=45 Identities=16% Similarity=0.079 Sum_probs=26.7
Q ss_pred CCEEEEccCCCCchhhhhcc----ccccCCcEEEEcchHHHHHHHHHHHH
Q 037567 29 RDCLVVMATGSGKSLCYQLP----PLVTGKTALVVSPLISLMQDQVMSLK 74 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~----~~~~~~~~lil~P~~~l~~q~~~~~~ 74 (374)
.-+++.|.||.|||..++-. +..++.+++++..- --..|+...+-
T Consensus 218 ~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlE-Ms~~ql~~Rll 266 (464)
T PRK08840 218 DLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLE-MPAEQLMMRML 266 (464)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEecc-CCHHHHHHHHH
Confidence 44567888999999654211 22346678777654 33455554543
No 454
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=92.49 E-value=0.2 Score=42.03 Aligned_cols=34 Identities=15% Similarity=0.086 Sum_probs=21.9
Q ss_pred CCCEEEEccCCCCchhhhhccc---ccc------CCcEEEEcc
Q 037567 28 KRDCLVVMATGSGKSLCYQLPP---LVT------GKTALVVSP 61 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~---~~~------~~~~lil~P 61 (374)
+.-+.+.||+|+|||...+..+ ... ...++++.-
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~ 61 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDT 61 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeC
Confidence 4556899999999995543221 222 357777764
No 455
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=92.48 E-value=0.23 Score=47.10 Aligned_cols=51 Identities=24% Similarity=0.234 Sum_probs=35.4
Q ss_pred CCCEEEEccCCCCchhhhhc---cccccCCcEEEEcchHHHHHHHHHHHHHcCCc
Q 037567 28 KRDCLVVMATGSGKSLCYQL---PPLVTGKTALVVSPLISLMQDQVMSLKQRGIN 79 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l---~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 79 (374)
+..+++.+++|+|||..... ..+..+.++++++-. +..++..+.+..+|..
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e-~~~~~i~~~~~~~g~~ 326 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFE-ESRAQLIRNARSWGID 326 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec-CCHHHHHHHHHHcCCC
Confidence 45668899999999954322 233467788888654 4567777777777654
No 456
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=92.39 E-value=0.8 Score=35.58 Aligned_cols=49 Identities=16% Similarity=0.013 Sum_probs=31.4
Q ss_pred HhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCeeEEEeecCcc
Q 037567 123 LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEK 174 (374)
Q Consensus 123 ~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~ 174 (374)
....++++|+||+=...+.+.-.. ..+..+....+...-+.+|+.-.+.
T Consensus 92 ~~~~~dLlVLDEi~~a~~~gli~~---~~v~~ll~~rp~~~evIlTGr~~p~ 140 (159)
T cd00561 92 ASGEYDLVILDEINYALGYGLLDV---EEVVDLLKAKPEDLELVLTGRNAPK 140 (159)
T ss_pred hcCCCCEEEEechHhHhhCCCCCH---HHHHHHHHcCCCCCEEEEECCCCCH
Confidence 346789999999987766555322 3344455555555567777765554
No 457
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=92.37 E-value=0.26 Score=47.38 Aligned_cols=55 Identities=15% Similarity=0.204 Sum_probs=42.9
Q ss_pred CCEEEEccCCCCchhhhhcccccc-CCcEEEEcchHHHHHHHHHHHHHcC-CceEEc
Q 037567 29 RDCLVVMATGSGKSLCYQLPPLVT-GKTALVVSPLISLMQDQVMSLKQRG-INAEFL 83 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~~~~~-~~~~lil~P~~~l~~q~~~~~~~~~-~~~~~~ 83 (374)
.++++.||||||||..+.+|.+.. ...++|+=|..++...+...-++.| .++.++
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~~gS~VV~DpKgE~~~~Ta~~R~~~Gg~~V~vf 268 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKYGGPLVCLDPSTEVAPMVCEHRRQAGNRKVIVL 268 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcCCCCEEEEEChHHHHHHHHHHHHHcCCCcEEEE
Confidence 478999999999999988886654 6678888888898887776666666 445443
No 458
>PF05729 NACHT: NACHT domain
Probab=92.30 E-value=0.5 Score=36.84 Aligned_cols=15 Identities=33% Similarity=0.324 Sum_probs=12.7
Q ss_pred EEEEccCCCCchhhh
Q 037567 31 CLVVMATGSGKSLCY 45 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~ 45 (374)
++|.|++|+|||...
T Consensus 3 l~I~G~~G~GKStll 17 (166)
T PF05729_consen 3 LWISGEPGSGKSTLL 17 (166)
T ss_pred EEEECCCCCChHHHH
Confidence 688999999999653
No 459
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=92.28 E-value=0.71 Score=40.15 Aligned_cols=17 Identities=24% Similarity=0.548 Sum_probs=14.9
Q ss_pred CCCEEEEccCCCCchhh
Q 037567 28 KRDCLVVMATGSGKSLC 44 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~ 44 (374)
++.+++.+|-|||||..
T Consensus 49 snsviiigprgsgkT~l 65 (408)
T KOG2228|consen 49 SNSVIIIGPRGSGKTIL 65 (408)
T ss_pred CCceEEEccCCCCceEe
Confidence 57899999999999953
No 460
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=92.28 E-value=0.45 Score=42.72 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=13.5
Q ss_pred CEEEEccCCCCchhhh
Q 037567 30 DCLVVMATGSGKSLCY 45 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~ 45 (374)
..++.||+|+|||..+
T Consensus 38 ~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIA 53 (355)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4689999999999654
No 461
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.20 E-value=1.1 Score=42.04 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=13.7
Q ss_pred EEEEccCCCCchhhhhc
Q 037567 31 CLVVMATGSGKSLCYQL 47 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~~l 47 (374)
+++.||+|+|||.++.+
T Consensus 41 yLf~Gp~G~GKTtlAr~ 57 (486)
T PRK14953 41 YIFAGPRGTGKTTIARI 57 (486)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57899999999976543
No 462
>PRK06904 replicative DNA helicase; Validated
Probab=92.19 E-value=1.6 Score=40.87 Aligned_cols=45 Identities=18% Similarity=0.106 Sum_probs=26.9
Q ss_pred CCEEEEccCCCCchhhhhcc----ccccCCcEEEEcchHHHHHHHHHHHH
Q 037567 29 RDCLVVMATGSGKSLCYQLP----PLVTGKTALVVSPLISLMQDQVMSLK 74 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~----~~~~~~~~lil~P~~~l~~q~~~~~~ 74 (374)
.=+++.|.||.|||..++-. +...+.++++++.- --..|+...+-
T Consensus 222 ~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlE-Ms~~ql~~Rll 270 (472)
T PRK06904 222 DLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLE-MPAEQIMMRML 270 (472)
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEecc-CCHHHHHHHHH
Confidence 34567888999999643211 22346678777654 34555555544
No 463
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=92.15 E-value=0.57 Score=43.44 Aligned_cols=47 Identities=13% Similarity=0.020 Sum_probs=27.4
Q ss_pred CCCEEEEccCCCCchhhhhccc---c-ccCCcEEEEcchHHHHHHHHHHHHH
Q 037567 28 KRDCLVVMATGSGKSLCYQLPP---L-VTGKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~---~-~~~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
|.-+++.|+||+|||...+-.+ . ..+.++++++.- .-..|+.+.+..
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlE-m~~~~i~~R~~~ 245 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLE-MSAEQLAMRMLS 245 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCc-CCHHHHHHHHHH
Confidence 3446889999999995443221 1 245677777654 334444444443
No 464
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=92.06 E-value=0.29 Score=44.02 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=16.6
Q ss_pred cCCCEEEEccCCCCchhhhh
Q 037567 27 EKRDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~~ 46 (374)
.|+.+++.||+|+|||....
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~ 186 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQ 186 (415)
T ss_pred CCCEEEEECCCCCChhHHHH
Confidence 47789999999999996543
No 465
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.95 E-value=0.1 Score=46.69 Aligned_cols=20 Identities=50% Similarity=0.647 Sum_probs=16.8
Q ss_pred cCCCEEEEccCCCCchhhhh
Q 037567 27 EKRDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~~ 46 (374)
++.|+++.+|||||||+.+.
T Consensus 225 eKSNvLllGPtGsGKTllaq 244 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQ 244 (564)
T ss_pred ecccEEEECCCCCchhHHHH
Confidence 35689999999999998654
No 466
>PRK08506 replicative DNA helicase; Provisional
Probab=91.89 E-value=0.97 Score=42.27 Aligned_cols=45 Identities=11% Similarity=0.013 Sum_probs=27.8
Q ss_pred CCEEEEccCCCCchhhhhcc---ccccCCcEEEEcchHHHHHHHHHHHH
Q 037567 29 RDCLVVMATGSGKSLCYQLP---PLVTGKTALVVSPLISLMQDQVMSLK 74 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~---~~~~~~~~lil~P~~~l~~q~~~~~~ 74 (374)
.-+++.|.||.|||...+-. +...+.++++++.- .-..|+...+.
T Consensus 193 ~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlE-Ms~~ql~~Rll 240 (472)
T PRK08506 193 DLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLE-MPAEQLMLRML 240 (472)
T ss_pred ceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCc-CCHHHHHHHHH
Confidence 44577888999999543322 23356678777654 34555555553
No 467
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=91.84 E-value=0.51 Score=44.99 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=14.1
Q ss_pred CEEEEccCCCCchhhhh
Q 037567 30 DCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~ 46 (374)
-+++.||.|+|||.++.
T Consensus 40 ayLf~Gp~G~GKTt~Ar 56 (563)
T PRK06647 40 AYIFSGPRGVGKTSSAR 56 (563)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36899999999997653
No 468
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.79 E-value=0.97 Score=42.39 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=54.7
Q ss_pred CCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEec
Q 037567 227 GAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM 286 (374)
Q Consensus 227 ~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~ 286 (374)
.++.+||.+|+++-+....+.|...|+.+..++++.+..++..++.....|..+++++|+
T Consensus 50 ~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TP 109 (470)
T TIGR00614 50 SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTP 109 (470)
T ss_pred cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 467899999999999999999999999999999999999888888888899999999998
No 469
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=91.71 E-value=0.094 Score=42.36 Aligned_cols=28 Identities=29% Similarity=0.312 Sum_probs=17.0
Q ss_pred EEEEccCCCCchhhhhccccccCCcEEE
Q 037567 31 CLVVMATGSGKSLCYQLPPLVTGKTALV 58 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~~l~~~~~~~~~li 58 (374)
.++.||||+|||-.++..+...+..+++
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~ 31 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVIS 31 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEE
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEE
Confidence 5789999999997655444444444443
No 470
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=91.65 E-value=0.71 Score=38.82 Aligned_cols=17 Identities=29% Similarity=0.288 Sum_probs=13.6
Q ss_pred CEEEEccCCCCchhhhh
Q 037567 30 DCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~ 46 (374)
-.++.||+|+|||...+
T Consensus 3 ~~ll~g~~G~GKS~lal 19 (239)
T cd01125 3 VSALVAPGGTGKSSLLL 19 (239)
T ss_pred eeEEEcCCCCCHHHHHH
Confidence 46899999999995543
No 471
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=91.60 E-value=0.2 Score=42.76 Aligned_cols=32 Identities=28% Similarity=0.489 Sum_probs=23.0
Q ss_pred CchhHHHHHHHHHc-C-CCEEEEccCCCCchhhh
Q 037567 14 FRPYQKDVIQRIIE-K-RDCLVVMATGSGKSLCY 45 (374)
Q Consensus 14 ~~~~Q~~~~~~~~~-~-~~~l~~a~tGsGKT~~~ 45 (374)
+.+.|.+.+..+.. . ..+++.++||||||.+.
T Consensus 64 ~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l 97 (264)
T cd01129 64 LKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL 97 (264)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH
Confidence 35567777766654 3 35789999999999653
No 472
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=91.58 E-value=0.33 Score=43.15 Aligned_cols=52 Identities=23% Similarity=0.346 Sum_probs=33.7
Q ss_pred CchhHHHHHHHHHc-CCCEEEEccCCCCchhhh--hccccccCCcEEEEcchHHH
Q 037567 14 FRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCY--QLPPLVTGKTALVVSPLISL 65 (374)
Q Consensus 14 ~~~~Q~~~~~~~~~-~~~~l~~a~tGsGKT~~~--~l~~~~~~~~~lil~P~~~l 65 (374)
+.+.+.+.+..+.+ +.++++.++||||||... ++..+....+++.+-.+.++
T Consensus 163 ~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El 217 (340)
T TIGR03819 163 FPPGVARLLRAIVAARLAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAEL 217 (340)
T ss_pred CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCccee
Confidence 44556666665544 678999999999999542 23333445566666666555
No 473
>PRK10436 hypothetical protein; Provisional
Probab=91.51 E-value=0.19 Score=46.52 Aligned_cols=32 Identities=28% Similarity=0.385 Sum_probs=23.3
Q ss_pred CchhHHHHHHHHHc--CCCEEEEccCCCCchhhh
Q 037567 14 FRPYQKDVIQRIIE--KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 14 ~~~~Q~~~~~~~~~--~~~~l~~a~tGsGKT~~~ 45 (374)
+.+.|.+.+..+.. +.-+++.||||||||.+.
T Consensus 202 ~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL 235 (462)
T PRK10436 202 MTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL 235 (462)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH
Confidence 45667777776654 345789999999999753
No 474
>PRK04841 transcriptional regulator MalT; Provisional
Probab=91.49 E-value=0.93 Score=46.47 Aligned_cols=33 Identities=21% Similarity=-0.008 Sum_probs=21.4
Q ss_pred CCCEEEEccCCCCchhhhhccccccCCcEEEEcc
Q 037567 28 KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P 61 (374)
.+-++|.||.|+|||....-.+.... .+.++.-
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l 64 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSL 64 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEec
Confidence 34579999999999976443332233 5666543
No 475
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=91.45 E-value=0.27 Score=48.22 Aligned_cols=96 Identities=15% Similarity=0.134 Sum_probs=54.9
Q ss_pred HHHHHHc------CCCEEEEccCCCCchhhhhc---cccccCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchh
Q 037567 21 VIQRIIE------KRDCLVVMATGSGKSLCYQL---PPLVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSS 91 (374)
Q Consensus 21 ~~~~~~~------~~~~l~~a~tGsGKT~~~~l---~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ 91 (374)
.++.++. +.-+.+.+|+|+|||...+. .+...+.+++++-.-..+... .++++|+...
T Consensus 47 ~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~---~A~~lGvDl~---------- 113 (790)
T PRK09519 47 ALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPD---YAKKLGVDTD---------- 113 (790)
T ss_pred HHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHH---HHHHcCCChh----------
Confidence 4555554 34567999999999965432 233457788888776655533 4455554321
Q ss_pred hhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhh
Q 037567 92 VQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCIS 139 (374)
Q Consensus 92 ~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~ 139 (374)
.+++..|......+...........+++||||-+-.+.
T Consensus 114 ----------~llv~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~aL~ 151 (790)
T PRK09519 114 ----------SLLVSQPDTGEQALEIADMLIRSGALDIVVIDSVAALV 151 (790)
T ss_pred ----------HeEEecCCCHHHHHHHHHHHhhcCCCeEEEEcchhhhc
Confidence 23344444332222221122223468999999988775
No 476
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=91.35 E-value=0.28 Score=42.99 Aligned_cols=49 Identities=10% Similarity=-0.097 Sum_probs=27.8
Q ss_pred CCEEEEccCCCCchhhhhccc----cc-----cCCcEEEEcchHHH-HHHHHHHHHHcC
Q 037567 29 RDCLVVMATGSGKSLCYQLPP----LV-----TGKTALVVSPLISL-MQDQVMSLKQRG 77 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~~----~~-----~~~~~lil~P~~~l-~~q~~~~~~~~~ 77 (374)
.-..+.|++|+|||...+..+ +. .+.+++|+.--... .++..+...+++
T Consensus 97 ~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g 155 (313)
T TIGR02238 97 SITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFG 155 (313)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcC
Confidence 345799999999995433221 11 24578887644322 344444445554
No 477
>PRK14701 reverse gyrase; Provisional
Probab=91.31 E-value=0.63 Score=49.98 Aligned_cols=61 Identities=16% Similarity=0.220 Sum_probs=53.3
Q ss_pred CCCcEEEEecchhHHHHHHHHHHHc------CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEecc
Q 037567 227 GAGSIIVYCMTIKDVEEISKALKQL------GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMA 287 (374)
Q Consensus 227 ~~~~~lVf~~~~~~~~~l~~~l~~~------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~ 287 (374)
.+.+++|.+|++.-+.++++.++.. +..+..+||+++..++...++.+.+|+.+|+|+|+.
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 4668999999999999999998873 456788999999999988889999999999999983
No 478
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=91.31 E-value=0.34 Score=46.97 Aligned_cols=54 Identities=17% Similarity=0.138 Sum_probs=39.4
Q ss_pred CCEEEEccCCCCchhhhhcccccc-CCcEEEEcchHHHHHHHHHHHHH-cCCceEE
Q 037567 29 RDCLVVMATGSGKSLCYQLPPLVT-GKTALVVSPLISLMQDQVMSLKQ-RGINAEF 82 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~~~~~-~~~~lil~P~~~l~~q~~~~~~~-~~~~~~~ 82 (374)
.++++.||||||||..+.+|.+.. ...++|+=|..++...+....++ .|-.+.+
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~~~S~VV~D~KGE~~~~Tag~R~~~~G~~V~~ 231 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSWGHSSVITDLKGELWALTAGWRQKHAKNKVLR 231 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhCCCCEEEEeCcHHHHHHHHHHHHHhCCCeEEE
Confidence 468999999999999988886654 56788888888887765555433 3444443
No 479
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=91.25 E-value=0.14 Score=44.02 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=24.0
Q ss_pred CCCEEEEccCCCCchhhh--hccccccC-CcEEEEcchHHH
Q 037567 28 KRDCLVVMATGSGKSLCY--QLPPLVTG-KTALVVSPLISL 65 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~--~l~~~~~~-~~~lil~P~~~l 65 (374)
+.++++.|+||||||... ++..+... .+++.+-...++
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred ceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 678899999999999653 22222234 566666555443
No 480
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=91.25 E-value=0.28 Score=40.81 Aligned_cols=42 Identities=14% Similarity=0.208 Sum_probs=26.2
Q ss_pred HHHHHHHc-----CCCEEEEccCCCCchhhhhccc---cccCCcEEEEcc
Q 037567 20 DVIQRIIE-----KRDCLVVMATGSGKSLCYQLPP---LVTGKTALVVSP 61 (374)
Q Consensus 20 ~~~~~~~~-----~~~~l~~a~tGsGKT~~~~l~~---~~~~~~~lil~P 61 (374)
..++.++. |.-+.+.|++|+|||...+..+ +..+.+++++.-
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~ 59 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDT 59 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 34556664 4456899999999995533222 234566766643
No 481
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=91.24 E-value=0.3 Score=42.87 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=16.7
Q ss_pred HHcCCCEEEEccCCCCchhh
Q 037567 25 IIEKRDCLVVMATGSGKSLC 44 (374)
Q Consensus 25 ~~~~~~~l~~a~tGsGKT~~ 44 (374)
+..+.++++.||||||||..
T Consensus 141 v~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hhCCCEEEEECCCCCCHHHH
Confidence 33578999999999999964
No 482
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=91.18 E-value=0.31 Score=47.28 Aligned_cols=49 Identities=24% Similarity=0.153 Sum_probs=39.5
Q ss_pred CCEEEEccCCCCchhhhhcccccc-CCcEEEEcchHHHHHHHHHHHHHcC
Q 037567 29 RDCLVVMATGSGKSLCYQLPPLVT-GKTALVVSPLISLMQDQVMSLKQRG 77 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~~~~~-~~~~lil~P~~~l~~q~~~~~~~~~ 77 (374)
.++++.||||||||..+.+|.+.. ...++|+=|..++...+....++.|
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~~~S~VV~D~KGEl~~~Ta~~R~~~G 194 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTWPGSAIVHDIKGENWQLTAGFRARFG 194 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhCCCCEEEEeCcchHHHHHHHHHHhCC
Confidence 578999999999999988886654 5578888888888887777766665
No 483
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=91.11 E-value=0.24 Score=46.36 Aligned_cols=32 Identities=31% Similarity=0.433 Sum_probs=23.6
Q ss_pred CchhHHHHHHHHHcCC-C-EEEEccCCCCchhhh
Q 037567 14 FRPYQKDVIQRIIEKR-D-CLVVMATGSGKSLCY 45 (374)
Q Consensus 14 ~~~~Q~~~~~~~~~~~-~-~l~~a~tGsGKT~~~ 45 (374)
+.+.|.+.+..+.... . +++.||||||||.+.
T Consensus 226 ~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL 259 (486)
T TIGR02533 226 MSPELLSRFERLIRRPHGIILVTGPTGSGKTTTL 259 (486)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 4566777777766543 3 579999999999654
No 484
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=91.09 E-value=1.5 Score=41.51 Aligned_cols=67 Identities=22% Similarity=0.385 Sum_probs=51.4
Q ss_pred EEEEecchhHHHHHHHHHHHc-----CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEec-----ccccc-ccccCccE
Q 037567 231 IIVYCMTIKDVEEISKALKQL-----GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM-----AFGMG-IDKPDVRH 299 (374)
Q Consensus 231 ~lVf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~-----~~~~G-~d~~~~~~ 299 (374)
+||.+||++-|.++++.+... ++.+..++|+.+...+...++ .| .+|+|+|+ .+..| +|+..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~---~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALK---RG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHh---cC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 899999999999999888763 466789999988766554444 46 89999997 34444 67777777
Q ss_pred EE
Q 037567 300 VI 301 (374)
Q Consensus 300 vi 301 (374)
+|
T Consensus 178 lV 179 (513)
T COG0513 178 LV 179 (513)
T ss_pred EE
Confidence 66
No 485
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.09 E-value=1.5 Score=36.44 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=19.1
Q ss_pred HHHHHHHHHc--CCCEEEEccCCCCchhhh
Q 037567 18 QKDVIQRIIE--KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 18 Q~~~~~~~~~--~~~~l~~a~tGsGKT~~~ 45 (374)
|.+.+.++-- .+.+++.+|+|+|||...
T Consensus 177 ~~~ly~qigidpprgvllygppg~gktml~ 206 (408)
T KOG0727|consen 177 HADLYKQIGIDPPRGVLLYGPPGTGKTMLA 206 (408)
T ss_pred HHHHHHHhCCCCCcceEEeCCCCCcHHHHH
Confidence 3444444322 467899999999999753
No 486
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=91.09 E-value=0.2 Score=40.58 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=13.7
Q ss_pred cCCCEEEEccCCCCchhhh
Q 037567 27 EKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~ 45 (374)
.++++++.+|+|+|||..+
T Consensus 21 G~h~lLl~GppGtGKTmlA 39 (206)
T PF01078_consen 21 GGHHLLLIGPPGTGKTMLA 39 (206)
T ss_dssp CC--EEEES-CCCTHHHHH
T ss_pred CCCCeEEECCCCCCHHHHH
Confidence 4689999999999999654
No 487
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=91.09 E-value=0.18 Score=39.78 Aligned_cols=45 Identities=16% Similarity=0.100 Sum_probs=31.1
Q ss_pred EEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHH
Q 037567 31 CLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
+++.|++|||||..+.-.+...+.+++++.-...+-.++.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHH
Confidence 478999999999655444444566888887776665555555443
No 488
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=91.08 E-value=0.39 Score=48.17 Aligned_cols=135 Identities=13% Similarity=0.136 Sum_probs=79.2
Q ss_pred CEEEEccCCCCchhhhhccccc-----cCCcEEEEcchHHHHHHHHHHHHH----------c-C--CceEEcCCCCC---
Q 037567 30 DCLVVMATGSGKSLCYQLPPLV-----TGKTALVVSPLISLMQDQVMSLKQ----------R-G--INAEFLGSAQT--- 88 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~l~~~~-----~~~~~lil~P~~~l~~q~~~~~~~----------~-~--~~~~~~~~~~~--- 88 (374)
++.+.++||+|||.+|+-.++. ...++||+||+.++.+.+...+.. + + +...++.+...
T Consensus 61 n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k~ 140 (986)
T PRK15483 61 NIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKKS 140 (986)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccccc
Confidence 6789999999999988766654 356799999999988776655431 1 1 22223332210
Q ss_pred -----chhhhhh-----hhcCCeeEEEEcCcccccCch--h------------hHHHHHhcCccEEEEeccchhhcccCc
Q 037567 89 -----DSSVQTK-----AETGYFQLLFMTPEKACIIPI--S------------FWSKLLKAGVCLFAVDEAHCISEWGHD 144 (374)
Q Consensus 89 -----~~~~~~~-----~~~~~~~i~i~T~~~l~~~~~--~------------~~~~~~~~~~~~vviDE~h~~~~~~~~ 144 (374)
......- .......|+++|.+.+..-.. . .+..+... --+||+||.|++...+
T Consensus 141 gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~-~PivIiDEPh~~~~~~-- 217 (986)
T PRK15483 141 GRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAAT-RPVVIIDEPHRFPRDN-- 217 (986)
T ss_pred ccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhC-CCEEEEECCCCCCcch--
Confidence 0110000 112257999999998865321 1 11111111 2379999999985422
Q ss_pred chHHHHHHHHHHHhcCCCCeeEEEeecCc
Q 037567 145 FRLEYKQLDKLRTFLLGVPFVALTATATE 173 (374)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~SaT~~~ 173 (374)
..+..+ ..+.+..++-+|||.+.
T Consensus 218 -----k~~~~i-~~lnpl~~lrysAT~~~ 240 (986)
T PRK15483 218 -----KFYQAI-EALKPQMIIRFGATFPD 240 (986)
T ss_pred -----HHHHHH-HhcCcccEEEEeeecCC
Confidence 223333 33334557889999876
No 489
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=91.02 E-value=0.34 Score=47.99 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=53.1
Q ss_pred CCchhHHHHHHHHHcCCCEEEEccCCCCchhhhh--cccc---ccCCcEEEEcchHHHHHHHHHHHHHcCCce
Q 037567 13 VFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQ--LPPL---VTGKTALVVSPLISLMQDQVMSLKQRGINA 80 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~--l~~~---~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 80 (374)
.++|-|-+++..-.+.....+.+|+|+|||-... +..+ ....+++|++.+..-.+|.++...+.....
T Consensus 738 ~ft~~qveai~sg~qpgltmvvgppgtgktd~avqil~~lyhn~p~qrTlivthsnqaln~lfeKi~~~d~d~ 810 (1320)
T KOG1806|consen 738 KFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQILSVLYHNSPNQRTLIVTHSNQALNQLFEKIMALDVDE 810 (1320)
T ss_pred ccCHHHHHHHHhcCCCCceeeecCCCCCCcchhhhhhhhhhhcCCCcceEEEEecccchhHHHHHHHhcccch
Confidence 5688899998887788899999999999995432 2222 257899999999999999988887654433
No 490
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=90.99 E-value=0.12 Score=39.24 Aligned_cols=16 Identities=31% Similarity=0.414 Sum_probs=13.6
Q ss_pred CEEEEccCCCCchhhh
Q 037567 30 DCLVVMATGSGKSLCY 45 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~ 45 (374)
++++.||+|+|||..+
T Consensus 1 ~vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEEESSSSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4789999999999654
No 491
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=90.96 E-value=0.14 Score=37.82 Aligned_cols=15 Identities=33% Similarity=0.368 Sum_probs=12.9
Q ss_pred EEEEccCCCCchhhh
Q 037567 31 CLVVMATGSGKSLCY 45 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~ 45 (374)
++|.|++|||||..+
T Consensus 2 I~I~G~~gsGKST~a 16 (121)
T PF13207_consen 2 IIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 578999999999754
No 492
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.90 E-value=0.2 Score=38.35 Aligned_cols=37 Identities=22% Similarity=0.153 Sum_probs=25.8
Q ss_pred EEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHH
Q 037567 31 CLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQD 68 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q 68 (374)
.++.+|.|||||..+......-.+ .++++...+++.|
T Consensus 5 ~IvaG~NGsGKstv~~~~~~~~~~-~~~~VN~D~iA~~ 41 (187)
T COG4185 5 DIVAGPNGSGKSTVYASTLAPLLP-GIVFVNADEIAAQ 41 (187)
T ss_pred EEEecCCCCCceeeeeccchhhcC-CeEEECHHHHhhh
Confidence 478899999999877655444333 6666677677654
No 493
>PRK08760 replicative DNA helicase; Provisional
Probab=90.87 E-value=1.2 Score=41.62 Aligned_cols=47 Identities=15% Similarity=0.015 Sum_probs=28.4
Q ss_pred CCEEEEccCCCCchhhhhcc---c-cccCCcEEEEcchHHHHHHHHHHHHHc
Q 037567 29 RDCLVVMATGSGKSLCYQLP---P-LVTGKTALVVSPLISLMQDQVMSLKQR 76 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~---~-~~~~~~~lil~P~~~l~~q~~~~~~~~ 76 (374)
.-++|.|.||+|||...+-. + ...+.++++++.- .-..|+...+...
T Consensus 230 ~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlE-Ms~~ql~~Rl~a~ 280 (476)
T PRK08760 230 DLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSME-MSASQLAMRLISS 280 (476)
T ss_pred ceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEecc-CCHHHHHHHHHHh
Confidence 34577888999999654322 2 2346678777654 3345566665543
No 494
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=90.87 E-value=0.25 Score=45.10 Aligned_cols=30 Identities=17% Similarity=0.381 Sum_probs=23.9
Q ss_pred hHHHHHHHHHcCCCEEEEccCCCCchhhhh
Q 037567 17 YQKDVIQRIIEKRDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 17 ~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~ 46 (374)
.....+..+..++++++.||+|+|||..+.
T Consensus 183 ~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 183 TIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 445666677779999999999999997653
No 495
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=90.87 E-value=0.35 Score=40.23 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=14.4
Q ss_pred CCCEEEEccCCCCchhh
Q 037567 28 KRDCLVVMATGSGKSLC 44 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~ 44 (374)
++.+++.||.|+|||..
T Consensus 20 ~~~~~l~G~rg~GKTsL 36 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL 36 (234)
T ss_dssp SSEEEEEESTTSSHHHH
T ss_pred CcEEEEEcCCcCCHHHH
Confidence 46788999999999964
No 496
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=90.81 E-value=0.39 Score=40.55 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=17.0
Q ss_pred HHcCCCEEEEccCCCCchhh
Q 037567 25 IIEKRDCLVVMATGSGKSLC 44 (374)
Q Consensus 25 ~~~~~~~l~~a~tGsGKT~~ 44 (374)
+..|+.+++.+|.|+|||..
T Consensus 13 i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34688999999999999964
No 497
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=90.78 E-value=0.11 Score=45.11 Aligned_cols=41 Identities=12% Similarity=0.059 Sum_probs=26.5
Q ss_pred CCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhc
Q 037567 99 GYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISE 140 (374)
Q Consensus 99 ~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~ 140 (374)
...+|+|+++..|..-..+......+ ...++||||||++.+
T Consensus 210 ~~Adivi~ny~yll~~~~r~~~~~~l-~~~~lIiDEAHnL~d 250 (289)
T smart00488 210 EFANVVVLPYQYLLDPKIRQALSIEL-KDSIVIFDEAHNLDN 250 (289)
T ss_pred hcCCEEEECHHHHhcHHHHHHhcccc-cccEEEEeCccChHH
Confidence 35689999998776543221101112 356899999999975
No 498
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=90.78 E-value=0.11 Score=45.11 Aligned_cols=41 Identities=12% Similarity=0.059 Sum_probs=26.5
Q ss_pred CCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhc
Q 037567 99 GYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISE 140 (374)
Q Consensus 99 ~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~ 140 (374)
...+|+|+++..|..-..+......+ ...++||||||++.+
T Consensus 210 ~~Adivi~ny~yll~~~~r~~~~~~l-~~~~lIiDEAHnL~d 250 (289)
T smart00489 210 EFANVVVLPYQYLLDPKIRQALSIEL-KDSIVIFDEAHNLDN 250 (289)
T ss_pred hcCCEEEECHHHHhcHHHHHHhcccc-cccEEEEeCccChHH
Confidence 35689999998776543221101112 356899999999975
No 499
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=90.72 E-value=0.18 Score=32.04 Aligned_cols=18 Identities=33% Similarity=0.327 Sum_probs=14.6
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
+...++.+|+|+|||..+
T Consensus 23 g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 346899999999999653
No 500
>PRK13531 regulatory ATPase RavA; Provisional
Probab=90.71 E-value=0.25 Score=45.53 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=20.7
Q ss_pred HHHHHHHcCCCEEEEccCCCCchhhh
Q 037567 20 DVIQRIIEKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 20 ~~~~~~~~~~~~l~~a~tGsGKT~~~ 45 (374)
.+...++.+.++++.||+|+|||..+
T Consensus 31 lll~aalag~hVLL~GpPGTGKT~LA 56 (498)
T PRK13531 31 LCLLAALSGESVFLLGPPGIAKSLIA 56 (498)
T ss_pred HHHHHHccCCCEEEECCCChhHHHHH
Confidence 34445567899999999999999765
Done!