Query 037567
Match_columns 374
No_of_seqs 157 out of 1647
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 23:35:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037567.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037567hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oyw_A RECQ helicase, ATP-depe 100.0 1.5E-59 5E-64 437.2 29.0 366 2-374 14-382 (523)
2 2v1x_A ATP-dependent DNA helic 100.0 2.7E-59 9.3E-64 439.4 30.6 367 2-374 33-408 (591)
3 2db3_A ATP-dependent RNA helic 100.0 1.1E-52 3.9E-57 384.1 27.8 319 2-335 68-407 (434)
4 2i4i_A ATP-dependent RNA helic 100.0 1.3E-51 4.5E-56 377.1 24.0 332 2-345 27-393 (417)
5 1xti_A Probable ATP-dependent 100.0 1E-50 3.5E-55 368.1 26.5 323 2-335 20-357 (391)
6 2j0s_A ATP-dependent RNA helic 100.0 3.8E-51 1.3E-55 373.2 22.1 328 2-342 49-390 (410)
7 3i5x_A ATP-dependent RNA helic 100.0 2.4E-50 8.3E-55 381.9 27.2 338 2-344 84-458 (563)
8 3sqw_A ATP-dependent RNA helic 100.0 4.1E-50 1.4E-54 380.5 28.5 338 2-344 33-407 (579)
9 3eiq_A Eukaryotic initiation f 100.0 2.2E-51 7.5E-56 375.3 17.9 329 2-342 52-394 (414)
10 1s2m_A Putative ATP-dependent 100.0 5.6E-50 1.9E-54 364.3 23.5 330 2-343 33-373 (400)
11 2z0m_A 337AA long hypothetical 100.0 2E-49 7E-54 352.4 21.9 319 2-342 6-329 (337)
12 3pey_A ATP-dependent RNA helic 100.0 6E-49 2.1E-53 357.0 25.2 319 2-336 17-357 (395)
13 1hv8_A Putative ATP-dependent 100.0 1.9E-49 6.6E-54 356.7 20.8 326 2-344 18-354 (367)
14 3fht_A ATP-dependent RNA helic 100.0 1.9E-48 6.3E-53 355.8 26.0 321 2-336 37-380 (412)
15 1fuu_A Yeast initiation factor 100.0 1.6E-50 5.5E-55 367.2 8.3 335 2-349 33-380 (394)
16 3fmp_B ATP-dependent RNA helic 100.0 2.5E-49 8.5E-54 367.7 9.0 329 2-345 104-457 (479)
17 3oiy_A Reverse gyrase helicase 100.0 3.3E-47 1.1E-51 347.2 21.5 308 2-332 11-362 (414)
18 3fho_A ATP-dependent RNA helic 100.0 5.7E-48 1.9E-52 359.5 7.3 327 3-343 132-479 (508)
19 2va8_A SSO2462, SKI2-type heli 100.0 2E-43 6.9E-48 342.8 26.4 317 3-336 21-409 (715)
20 2p6r_A Afuhel308 helicase; pro 100.0 4.5E-44 1.5E-48 346.2 20.8 320 3-338 16-391 (702)
21 4gl2_A Interferon-induced heli 100.0 2E-44 6.9E-49 350.0 15.7 321 13-336 7-520 (699)
22 1wp9_A ATP-dependent RNA helic 100.0 2E-43 6.7E-48 329.7 21.2 315 13-337 9-477 (494)
23 4a2p_A RIG-I, retinoic acid in 100.0 6.3E-44 2.2E-48 338.2 17.6 321 10-338 4-511 (556)
24 2ykg_A Probable ATP-dependent 100.0 3.8E-44 1.3E-48 347.9 14.5 330 3-339 4-520 (696)
25 2zj8_A DNA helicase, putative 100.0 3.5E-43 1.2E-47 340.9 20.9 315 3-337 14-389 (720)
26 3l9o_A ATP-dependent RNA helic 100.0 3.9E-43 1.3E-47 349.6 20.4 310 6-335 178-597 (1108)
27 3tbk_A RIG-I helicase domain; 100.0 2.9E-43 9.9E-48 333.6 18.6 317 13-340 4-512 (555)
28 2xgj_A ATP-dependent RNA helic 100.0 1.5E-42 5.3E-47 342.4 24.0 310 6-335 80-499 (1010)
29 4ddu_A Reverse gyrase; topoiso 100.0 4.9E-42 1.7E-46 341.6 23.3 280 3-307 69-388 (1104)
30 4a2q_A RIG-I, retinoic acid in 100.0 7.6E-43 2.6E-47 341.7 16.3 324 8-338 243-752 (797)
31 1gm5_A RECG; helicase, replica 100.0 6.4E-43 2.2E-47 335.0 14.5 310 2-334 358-696 (780)
32 4f92_B U5 small nuclear ribonu 100.0 1.2E-41 4E-46 349.9 24.6 334 10-349 923-1322(1724)
33 4f92_B U5 small nuclear ribonu 100.0 1.4E-41 4.8E-46 349.4 23.4 336 6-347 71-485 (1724)
34 2oca_A DAR protein, ATP-depend 100.0 3.8E-42 1.3E-46 321.9 14.9 310 13-344 113-465 (510)
35 2eyq_A TRCF, transcription-rep 100.0 2.3E-40 7.9E-45 331.6 28.6 310 3-336 594-923 (1151)
36 2fwr_A DNA repair protein RAD2 100.0 1.8E-41 6.2E-46 314.4 17.8 293 13-335 93-454 (472)
37 4a2w_A RIG-I, retinoic acid in 100.0 2.5E-41 8.6E-46 334.2 19.8 325 8-338 243-752 (936)
38 4a4z_A Antiviral helicase SKI2 100.0 2.3E-41 8E-46 334.1 18.8 308 5-333 32-490 (997)
39 1tf5_A Preprotein translocase 100.0 4.5E-40 1.5E-44 309.7 23.6 323 3-336 74-546 (844)
40 1gku_B Reverse gyrase, TOP-RG; 100.0 1.4E-40 4.6E-45 331.5 16.0 310 3-338 48-457 (1054)
41 3h1t_A Type I site-specific re 100.0 4.7E-40 1.6E-44 312.6 16.7 305 13-333 178-556 (590)
42 2jlq_A Serine protease subunit 100.0 1.6E-39 5.6E-44 297.7 16.9 284 10-334 1-310 (451)
43 2wv9_A Flavivirin protease NS2 100.0 8.5E-40 2.9E-44 309.9 11.0 273 13-332 215-530 (673)
44 1yks_A Genome polyprotein [con 100.0 4.3E-39 1.5E-43 293.5 13.7 269 25-342 5-309 (440)
45 2fsf_A Preprotein translocase 100.0 7.6E-38 2.6E-42 293.8 20.7 323 3-336 65-584 (853)
46 2whx_A Serine protease/ntpase/ 100.0 8.9E-39 3E-43 301.2 14.3 285 11-341 169-487 (618)
47 1nkt_A Preprotein translocase 100.0 4.2E-37 1.4E-41 289.1 24.6 327 2-336 101-618 (922)
48 3dmq_A RNA polymerase-associat 100.0 1.8E-37 6.2E-42 307.0 20.1 317 13-334 153-612 (968)
49 3o8b_A HCV NS3 protease/helica 100.0 2.8E-38 9.6E-43 295.0 13.1 277 13-339 217-518 (666)
50 1z63_A Helicase of the SNF2/RA 100.0 2.4E-36 8.3E-41 282.0 23.5 304 13-335 37-453 (500)
51 2z83_A Helicase/nucleoside tri 100.0 2.1E-37 7.1E-42 284.2 13.6 272 24-335 17-313 (459)
52 2v6i_A RNA helicase; membrane, 100.0 3.7E-36 1.3E-40 273.7 18.4 266 27-332 1-288 (431)
53 2xau_A PRE-mRNA-splicing facto 100.0 8.3E-37 2.8E-41 294.7 14.3 314 4-337 86-445 (773)
54 3rc3_A ATP-dependent RNA helic 100.0 2.1E-34 7.1E-39 272.2 20.6 280 17-334 144-444 (677)
55 3mwy_W Chromo domain-containin 100.0 3.9E-34 1.3E-38 279.3 23.1 311 13-335 236-684 (800)
56 1z3i_X Similar to RAD54-like; 100.0 5.8E-33 2E-37 264.7 23.8 311 13-335 55-528 (644)
57 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 1.3E-33 4.5E-38 277.4 17.2 309 13-333 271-707 (1038)
58 3jux_A Protein translocase sub 100.0 2.1E-30 7.1E-35 238.9 24.2 326 2-336 65-588 (822)
59 1c4o_A DNA nucleotide excision 100.0 3.6E-28 1.2E-32 231.4 27.0 124 212-336 423-551 (664)
60 3iuy_A Probable ATP-dependent 100.0 6.1E-29 2.1E-33 207.7 10.6 167 2-177 32-214 (228)
61 3fe2_A Probable ATP-dependent 100.0 9.6E-29 3.3E-33 208.2 10.3 172 2-182 41-228 (242)
62 2d7d_A Uvrabc system protein B 100.0 1.5E-26 5.1E-31 220.2 26.6 124 212-336 429-557 (661)
63 1t6n_A Probable ATP-dependent 100.0 1.6E-28 5.4E-33 204.1 10.7 168 2-177 26-206 (220)
64 3dkp_A Probable ATP-dependent 100.0 9.6E-29 3.3E-33 208.8 8.4 177 2-183 41-231 (245)
65 1vec_A ATP-dependent RNA helic 100.0 4.2E-28 1.4E-32 199.5 11.6 173 2-183 15-199 (206)
66 1q0u_A Bstdead; DEAD protein, 100.0 1.8E-28 6.1E-33 203.5 9.4 172 2-183 16-202 (219)
67 3ly5_A ATP-dependent RNA helic 100.0 1.8E-28 6.1E-33 208.6 9.3 170 2-179 66-250 (262)
68 2ipc_A Preprotein translocase 99.9 3.2E-26 1.1E-30 215.0 24.4 325 2-336 69-699 (997)
69 2oxc_A Probable ATP-dependent 99.9 5.1E-28 1.7E-32 202.2 10.7 166 2-176 36-213 (230)
70 3bor_A Human initiation factor 99.9 3.1E-28 1E-32 204.4 9.0 174 2-183 42-226 (237)
71 2pl3_A Probable ATP-dependent 99.9 1.5E-27 5E-32 200.4 11.8 177 2-189 37-228 (236)
72 3ber_A Probable ATP-dependent 99.9 1.1E-27 3.9E-32 202.1 10.9 168 2-177 55-233 (249)
73 1qde_A EIF4A, translation init 99.9 1.4E-27 4.9E-32 198.9 11.2 170 2-181 26-206 (224)
74 2gxq_A Heat resistant RNA depe 99.9 2.4E-27 8.4E-32 195.1 11.5 172 2-183 13-196 (207)
75 1wrb_A DJVLGB; RNA helicase, D 99.9 3.3E-27 1.1E-31 200.3 11.3 167 2-177 35-225 (253)
76 3fmo_B ATP-dependent RNA helic 99.9 6E-27 2.1E-31 202.7 10.3 165 2-177 104-283 (300)
77 2vl7_A XPD; helicase, unknown 99.9 6.8E-26 2.3E-30 211.7 14.1 307 8-334 3-520 (540)
78 2hjv_A ATP-dependent RNA helic 99.9 3.4E-25 1.2E-29 174.4 14.8 131 212-343 20-150 (163)
79 2jgn_A DBX, DDX3, ATP-dependen 99.9 4.2E-25 1.4E-29 177.2 13.6 133 213-345 31-163 (185)
80 3eaq_A Heat resistant RNA depe 99.9 1.6E-24 5.4E-29 177.9 15.6 128 212-340 16-143 (212)
81 1fuk_A Eukaryotic initiation f 99.9 1E-24 3.6E-29 172.1 12.9 129 214-343 17-145 (165)
82 2rb4_A ATP-dependent RNA helic 99.9 1.9E-24 6.6E-29 172.2 13.4 126 214-340 21-152 (175)
83 1t5i_A C_terminal domain of A 99.9 2.9E-24 1E-28 170.3 13.5 123 212-335 16-138 (172)
84 2p6n_A ATP-dependent RNA helic 99.9 6.6E-24 2.3E-28 170.9 14.7 121 213-335 41-161 (191)
85 3i32_A Heat resistant RNA depe 99.9 2.5E-23 8.7E-28 178.5 15.4 128 212-340 13-140 (300)
86 2yjt_D ATP-dependent RNA helic 99.8 6.2E-25 2.1E-29 174.2 0.0 134 215-349 18-151 (170)
87 3crv_A XPD/RAD3 related DNA he 99.9 2E-21 6.7E-26 182.3 22.2 313 10-335 1-531 (551)
88 3b6e_A Interferon-induced heli 99.9 3.3E-23 1.1E-27 171.5 6.8 159 11-170 31-216 (216)
89 2fz4_A DNA repair protein RAD2 99.9 3.1E-22 1.1E-26 167.0 11.1 140 13-176 93-233 (237)
90 1rif_A DAR protein, DNA helica 99.9 2.3E-22 7.8E-27 173.1 7.6 145 13-175 113-266 (282)
91 4a15_A XPD helicase, ATP-depen 99.8 3E-19 1E-23 168.7 19.7 164 164-336 378-585 (620)
92 3llm_A ATP-dependent RNA helic 99.8 6.8E-20 2.3E-24 153.1 9.0 159 12-184 60-228 (235)
93 1z5z_A Helicase of the SNF2/RA 99.8 1.4E-18 4.9E-23 147.2 11.1 119 216-334 99-223 (271)
94 4b3f_X DNA-binding protein smu 98.7 3E-08 1E-12 94.8 9.4 72 13-84 189-264 (646)
95 1w36_D RECD, exodeoxyribonucle 98.7 4.9E-08 1.7E-12 92.3 9.3 61 15-75 151-218 (608)
96 2gk6_A Regulator of nonsense t 98.5 2.5E-07 8.7E-12 87.9 9.6 71 11-81 178-252 (624)
97 3upu_A ATP-dependent DNA helic 98.4 1.7E-06 5.9E-11 79.1 11.9 65 9-73 21-94 (459)
98 2xzl_A ATP-dependent helicase 98.4 6.7E-07 2.3E-11 86.9 9.5 71 11-81 358-432 (802)
99 2wjy_A Regulator of nonsense t 98.4 7.6E-07 2.6E-11 86.4 8.8 71 11-81 354-428 (800)
100 3e1s_A Exodeoxyribonuclease V, 98.3 7.7E-07 2.6E-11 83.3 5.8 61 13-73 189-252 (574)
101 3lfu_A DNA helicase II; SF1 he 98.1 5.8E-05 2E-09 72.3 15.3 63 12-76 8-77 (647)
102 3hgt_A HDA1 complex subunit 3; 97.7 0.00022 7.6E-09 60.6 10.3 127 215-346 111-248 (328)
103 3vkw_A Replicase large subunit 97.7 4E-05 1.4E-09 68.4 5.5 44 31-76 164-207 (446)
104 2o0j_A Terminase, DNA packagin 97.6 0.00028 9.6E-09 62.2 10.0 64 13-76 163-231 (385)
105 3cpe_A Terminase, DNA packagin 97.5 0.0007 2.4E-08 63.9 11.4 64 13-76 163-231 (592)
106 2orw_A Thymidine kinase; TMTK, 97.4 0.00025 8.4E-09 56.0 6.6 36 28-63 3-41 (184)
107 2j9r_A Thymidine kinase; TK1, 97.4 0.00023 8E-09 56.8 5.5 34 31-64 31-67 (214)
108 3ec2_A DNA replication protein 97.3 0.00082 2.8E-08 52.7 8.3 57 15-72 16-85 (180)
109 1xx6_A Thymidine kinase; NESG, 97.2 0.00018 6.3E-09 56.9 3.2 36 28-63 8-46 (191)
110 3e2i_A Thymidine kinase; Zn-bi 97.1 0.001 3.5E-08 53.1 6.8 37 28-64 28-67 (219)
111 4b4t_J 26S protease regulatory 97.1 0.0011 3.9E-08 58.4 7.4 34 28-61 182-215 (405)
112 3co5_A Putative two-component 97.0 0.0027 9.2E-08 47.7 8.2 19 27-45 26-44 (143)
113 1l8q_A Chromosomal replication 96.9 0.0054 1.8E-07 53.1 10.2 43 29-72 38-83 (324)
114 2zpa_A Uncharacterized protein 96.9 0.0023 7.8E-08 60.2 8.2 115 13-174 175-291 (671)
115 3eie_A Vacuolar protein sortin 96.9 0.0029 9.8E-08 54.8 7.9 31 29-59 52-82 (322)
116 1xwi_A SKD1 protein; VPS4B, AA 96.7 0.0034 1.2E-07 54.3 7.3 18 29-46 46-63 (322)
117 3pvs_A Replication-associated 96.7 0.0016 5.4E-08 59.0 5.1 17 30-46 52-68 (447)
118 1a5t_A Delta prime, HOLB; zinc 96.7 0.0051 1.8E-07 53.5 8.2 32 14-45 3-41 (334)
119 3h4m_A Proteasome-activating n 96.6 0.0026 8.8E-08 54.0 5.8 19 28-46 51-69 (285)
120 4b4t_M 26S protease regulatory 96.5 0.0023 7.9E-08 57.2 5.0 33 28-60 215-247 (434)
121 2kjq_A DNAA-related protein; s 96.5 0.0024 8.2E-08 48.3 4.4 18 27-44 35-52 (149)
122 2qp9_X Vacuolar protein sortin 96.5 0.0053 1.8E-07 53.9 7.0 31 29-59 85-115 (355)
123 2z4s_A Chromosomal replication 96.5 0.013 4.3E-07 53.1 9.5 43 29-72 131-178 (440)
124 3vfd_A Spastin; ATPase, microt 96.4 0.0048 1.7E-07 54.9 6.6 32 28-59 148-179 (389)
125 3bos_A Putative DNA replicatio 96.4 0.0075 2.6E-07 49.4 7.3 18 28-45 52-69 (242)
126 3cf0_A Transitional endoplasmi 96.4 0.0094 3.2E-07 51.0 8.1 32 28-59 49-80 (301)
127 2zan_A Vacuolar protein sortin 96.4 0.011 3.7E-07 53.6 8.9 18 29-46 168-185 (444)
128 2qz4_A Paraplegin; AAA+, SPG7, 96.4 0.017 5.8E-07 48.1 9.3 18 29-46 40-57 (262)
129 2p65_A Hypothetical protein PF 96.4 0.0088 3E-07 46.7 7.0 18 28-45 43-60 (187)
130 1gm5_A RECG; helicase, replica 96.3 0.016 5.5E-07 56.1 9.9 91 212-302 401-496 (780)
131 3te6_A Regulatory protein SIR3 96.3 0.0057 1.9E-07 52.4 5.9 18 28-45 45-62 (318)
132 4b4t_I 26S protease regulatory 96.3 0.0032 1.1E-07 55.8 4.4 32 28-59 216-247 (437)
133 4b4t_L 26S protease subunit RP 96.3 0.0027 9.2E-08 56.9 3.9 33 28-60 215-247 (437)
134 4b4t_H 26S protease regulatory 96.3 0.0027 9.4E-08 56.8 3.9 33 28-60 243-275 (467)
135 2b8t_A Thymidine kinase; deoxy 96.2 0.021 7.3E-07 46.1 8.7 36 28-63 12-50 (223)
136 2qby_B CDC6 homolog 3, cell di 96.2 0.013 4.4E-07 51.9 8.0 17 29-45 46-62 (384)
137 1uaa_A REP helicase, protein ( 96.2 0.0025 8.4E-08 61.3 3.5 62 13-76 2-70 (673)
138 1pjr_A PCRA; DNA repair, DNA r 96.2 0.0043 1.5E-07 60.0 5.2 62 12-75 10-78 (724)
139 1d2n_A N-ethylmaleimide-sensit 96.1 0.0042 1.5E-07 52.2 4.3 18 29-46 65-82 (272)
140 2orv_A Thymidine kinase; TP4A 96.1 0.0014 4.9E-08 52.9 1.2 37 28-64 19-58 (234)
141 3hu3_A Transitional endoplasmi 96.1 0.01 3.4E-07 54.4 6.8 30 29-58 239-268 (489)
142 3d8b_A Fidgetin-like protein 1 96.1 0.0076 2.6E-07 52.9 5.8 20 28-47 117-136 (357)
143 3b9p_A CG5977-PA, isoform A; A 96.0 0.012 4E-07 50.2 6.6 18 28-45 54-71 (297)
144 3syl_A Protein CBBX; photosynt 96.0 0.098 3.4E-06 44.6 12.5 17 29-45 68-84 (309)
145 4b4t_K 26S protease regulatory 96.0 0.008 2.8E-07 53.7 5.4 32 28-59 206-237 (428)
146 3pfi_A Holliday junction ATP-d 95.8 0.018 6.1E-07 50.1 7.1 18 29-46 56-73 (338)
147 1w4r_A Thymidine kinase; type 95.8 0.0094 3.2E-07 46.8 4.6 35 28-62 20-57 (195)
148 2qby_A CDC6 homolog 1, cell di 95.8 0.037 1.3E-06 48.8 9.1 18 28-45 45-62 (386)
149 2w58_A DNAI, primosome compone 95.8 0.12 3.9E-06 41.0 11.0 17 29-45 55-71 (202)
150 3u4q_A ATP-dependent helicase/ 95.7 0.01 3.4E-07 61.0 5.6 61 13-75 10-79 (1232)
151 3u61_B DNA polymerase accessor 95.7 0.0062 2.1E-07 52.7 3.3 14 126-139 105-118 (324)
152 2chg_A Replication factor C sm 95.6 0.022 7.6E-07 45.8 6.3 17 29-45 39-55 (226)
153 2gno_A DNA polymerase III, gam 95.6 0.0059 2E-07 52.2 2.7 16 30-45 20-35 (305)
154 3oiy_A Reverse gyrase helicase 95.4 0.079 2.7E-06 47.4 9.9 85 218-302 54-145 (414)
155 3cf2_A TER ATPase, transitiona 95.4 0.015 5E-07 56.3 5.1 31 29-59 512-542 (806)
156 3cf2_A TER ATPase, transitiona 95.4 0.015 5.2E-07 56.2 5.2 31 29-59 239-269 (806)
157 1njg_A DNA polymerase III subu 95.3 0.047 1.6E-06 44.5 7.6 16 30-45 47-62 (250)
158 1g5t_A COB(I)alamin adenosyltr 95.3 0.047 1.6E-06 42.9 7.0 135 28-175 28-166 (196)
159 2dr3_A UPF0273 protein PH0284; 95.3 0.014 4.8E-07 48.1 4.2 51 27-78 22-75 (247)
160 2w0m_A SSO2452; RECA, SSPF, un 95.3 0.02 6.9E-07 46.6 5.1 34 28-61 23-59 (235)
161 2v1u_A Cell division control p 95.3 0.039 1.3E-06 48.8 7.3 18 28-45 44-61 (387)
162 1sxj_D Activator 1 41 kDa subu 95.2 0.029 9.8E-07 49.0 6.0 17 29-45 59-75 (353)
163 1sxj_A Activator 1 95 kDa subu 95.2 0.032 1.1E-06 51.6 6.5 32 29-60 78-109 (516)
164 1lv7_A FTSH; alpha/beta domain 95.2 0.024 8.3E-07 47.1 5.2 18 28-45 45-62 (257)
165 1fnn_A CDC6P, cell division co 95.1 0.049 1.7E-06 48.2 7.5 16 30-45 46-61 (389)
166 1jr3_A DNA polymerase III subu 94.9 0.11 3.6E-06 45.7 9.0 15 31-45 41-55 (373)
167 1iqp_A RFCS; clamp loader, ext 94.7 0.038 1.3E-06 47.6 5.4 16 30-45 48-63 (327)
168 2cvh_A DNA repair and recombin 94.6 0.049 1.7E-06 43.8 5.5 34 28-61 20-53 (220)
169 2r6a_A DNAB helicase, replicat 94.5 0.092 3.1E-06 47.7 7.6 35 28-62 203-241 (454)
170 3cmu_A Protein RECA, recombina 94.4 0.034 1.2E-06 58.9 5.0 96 21-139 1414-1518(2050)
171 3hjh_A Transcription-repair-co 94.3 0.048 1.6E-06 49.7 5.3 50 28-77 14-63 (483)
172 2q6t_A DNAB replication FORK h 94.3 0.14 4.6E-06 46.4 8.2 35 28-62 200-238 (444)
173 1v5w_A DMC1, meiotic recombina 94.2 0.11 3.7E-06 45.2 7.2 104 21-140 110-233 (343)
174 2eyq_A TRCF, transcription-rep 94.2 0.24 8.1E-06 50.5 10.5 88 214-301 638-730 (1151)
175 1sxj_B Activator 1 37 kDa subu 94.2 0.059 2E-06 46.3 5.5 16 30-45 44-59 (323)
176 4a1f_A DNAB helicase, replicat 94.2 0.097 3.3E-06 45.2 6.6 43 20-62 34-83 (338)
177 2ce7_A Cell division protein F 94.0 0.071 2.4E-06 48.5 5.7 18 29-46 50-67 (476)
178 2ehv_A Hypothetical protein PH 94.0 0.03 1E-06 46.1 3.1 35 27-61 29-67 (251)
179 2vhj_A Ntpase P4, P4; non- hyd 93.9 0.051 1.8E-06 46.3 4.3 19 28-46 123-141 (331)
180 3bh0_A DNAB-like replicative h 93.9 0.12 4E-06 44.4 6.7 45 28-73 68-115 (315)
181 3dm5_A SRP54, signal recogniti 93.9 0.47 1.6E-05 42.5 10.6 51 30-80 102-158 (443)
182 4ddu_A Reverse gyrase; topoiso 93.8 0.25 8.6E-06 50.0 9.8 86 217-302 110-202 (1104)
183 2zts_A Putative uncharacterize 93.7 0.031 1.1E-06 46.0 2.7 49 28-77 30-82 (251)
184 1ojl_A Transcriptional regulat 93.7 0.14 4.6E-06 43.7 6.7 18 28-45 25-42 (304)
185 1u94_A RECA protein, recombina 93.6 0.044 1.5E-06 47.8 3.4 43 20-62 49-100 (356)
186 2z43_A DNA repair and recombin 93.5 0.034 1.2E-06 48.0 2.6 97 28-140 107-217 (324)
187 1w5s_A Origin recognition comp 93.4 0.15 5.1E-06 45.4 6.8 17 29-45 51-69 (412)
188 1ixz_A ATP-dependent metallopr 93.4 0.19 6.6E-06 41.4 7.0 17 29-45 50-66 (254)
189 3hr8_A Protein RECA; alpha and 93.3 0.035 1.2E-06 48.3 2.4 97 20-139 47-152 (356)
190 1iy2_A ATP-dependent metallopr 93.1 0.36 1.2E-05 40.4 8.3 17 29-45 74-90 (278)
191 1vma_A Cell division protein F 93.1 0.28 9.6E-06 41.7 7.6 50 30-79 106-161 (306)
192 3kl4_A SRP54, signal recogniti 93.1 0.84 2.9E-05 40.8 10.9 31 30-60 99-132 (433)
193 2zr9_A Protein RECA, recombina 93.0 0.052 1.8E-06 47.3 3.0 43 20-62 47-98 (349)
194 1xp8_A RECA protein, recombina 92.9 0.05 1.7E-06 47.7 2.7 97 20-139 60-165 (366)
195 1n0w_A DNA repair protein RAD5 92.7 0.11 3.9E-06 42.4 4.6 18 28-45 24-41 (243)
196 3n70_A Transport activator; si 92.7 0.072 2.5E-06 39.8 3.0 19 27-45 23-41 (145)
197 3bgw_A DNAB-like replicative h 91.9 0.22 7.6E-06 44.9 5.8 35 28-62 197-234 (444)
198 1ypw_A Transitional endoplasmi 91.9 0.15 5E-06 49.9 4.9 19 28-46 238-256 (806)
199 1r6b_X CLPA protein; AAA+, N-t 91.9 0.18 6.3E-06 49.0 5.6 18 28-45 207-224 (758)
200 3io5_A Recombination and repai 91.6 0.07 2.4E-06 45.4 1.9 86 30-139 30-124 (333)
201 3cmw_A Protein RECA, recombina 91.5 0.13 4.3E-06 53.9 4.1 89 29-140 1432-1523(1706)
202 1qvr_A CLPB protein; coiled co 91.5 0.22 7.6E-06 49.1 5.7 18 28-45 191-208 (854)
203 1oyw_A RECQ helicase, ATP-depe 91.4 0.61 2.1E-05 43.1 8.3 60 227-286 64-123 (523)
204 2v1x_A ATP-dependent DNA helic 91.3 0.64 2.2E-05 43.6 8.4 60 227-286 83-144 (591)
205 2rb4_A ATP-dependent RNA helic 91.2 1 3.4E-05 34.6 8.2 73 52-132 33-108 (175)
206 3b85_A Phosphate starvation-in 91.1 0.19 6.5E-06 40.1 4.0 35 11-45 5-39 (208)
207 2l82_A Designed protein OR32; 90.8 1.3 4.6E-05 30.1 7.2 52 231-282 5-56 (162)
208 2i1q_A DNA repair and recombin 90.7 0.078 2.7E-06 45.7 1.5 17 29-45 99-115 (322)
209 3pxi_A Negative regulator of g 90.3 1.1 3.9E-05 43.4 9.4 16 30-45 523-538 (758)
210 1qvr_A CLPB protein; coiled co 89.8 1.2 4.1E-05 43.9 9.1 16 30-45 590-605 (854)
211 1tue_A Replication protein E1; 89.7 0.12 4.2E-06 40.8 1.7 27 19-45 45-75 (212)
212 1t6n_A Probable ATP-dependent 89.1 4.2 0.00014 32.2 10.6 73 228-303 82-165 (220)
213 3cmu_A Protein RECA, recombina 89.0 0.39 1.3E-05 51.2 5.2 43 27-70 1080-1125(2050)
214 3nbx_X ATPase RAVA; AAA+ ATPas 89.0 0.28 9.5E-06 44.9 3.7 26 20-45 33-58 (500)
215 2oap_1 GSPE-2, type II secreti 88.5 0.53 1.8E-05 43.2 5.2 20 25-44 257-276 (511)
216 1jbk_A CLPB protein; beta barr 88.3 0.28 9.5E-06 38.0 2.9 17 29-45 44-60 (195)
217 3t15_A Ribulose bisphosphate c 88.2 0.14 4.8E-06 43.4 1.1 33 29-61 37-69 (293)
218 2r44_A Uncharacterized protein 88.0 0.2 6.9E-06 43.2 2.1 22 24-45 42-63 (331)
219 3fe2_A Probable ATP-dependent 87.7 2.3 7.9E-05 34.5 8.3 72 227-302 101-182 (242)
220 3ber_A Probable ATP-dependent 87.6 3.8 0.00013 33.4 9.5 72 227-302 110-192 (249)
221 2hjv_A ATP-dependent RNA helic 87.6 1.3 4.5E-05 33.4 6.2 75 52-134 34-111 (163)
222 1ls1_A Signal recognition part 87.4 1.8 6.2E-05 36.5 7.6 31 30-60 100-133 (295)
223 2qgz_A Helicase loader, putati 87.3 0.49 1.7E-05 40.3 4.0 33 28-60 152-188 (308)
224 3hws_A ATP-dependent CLP prote 87.1 0.52 1.8E-05 41.2 4.2 32 28-59 51-82 (363)
225 3nwn_A Kinesin-like protein KI 87.1 0.44 1.5E-05 41.4 3.6 32 17-48 84-125 (359)
226 3cmw_A Protein RECA, recombina 87.0 0.33 1.1E-05 50.9 3.2 89 28-139 732-823 (1706)
227 3lda_A DNA repair protein RAD5 86.8 1.2 4.1E-05 39.4 6.3 19 28-46 178-196 (400)
228 1u0j_A DNA replication protein 86.7 0.35 1.2E-05 40.0 2.7 25 22-46 93-122 (267)
229 1ofh_A ATP-dependent HSL prote 86.6 0.32 1.1E-05 41.3 2.5 18 28-45 50-67 (310)
230 1q57_A DNA primase/helicase; d 86.6 1 3.4E-05 41.4 5.9 45 28-73 242-290 (503)
231 1lvg_A Guanylate kinase, GMP k 86.4 0.29 9.9E-06 38.6 2.0 19 27-45 3-21 (198)
232 3vaa_A Shikimate kinase, SK; s 86.3 0.28 9.5E-06 38.7 1.8 21 26-46 23-43 (199)
233 2p6n_A ATP-dependent RNA helic 86.3 1.8 6E-05 33.8 6.5 69 38-107 39-111 (191)
234 3iuy_A Probable ATP-dependent 86.2 4.5 0.00015 32.3 9.2 72 227-302 93-173 (228)
235 1kgd_A CASK, peripheral plasma 86.1 0.27 9.1E-06 38.1 1.6 19 27-45 4-22 (180)
236 2bjv_A PSP operon transcriptio 86.1 0.4 1.4E-05 39.8 2.8 18 28-45 29-46 (265)
237 1fuk_A Eukaryotic initiation f 86.0 1.6 5.5E-05 33.0 6.0 57 52-108 29-88 (165)
238 1t5i_A C_terminal domain of A 86.0 1.8 6.1E-05 33.1 6.3 57 52-108 30-89 (172)
239 1bg2_A Kinesin; motor protein, 85.9 0.56 1.9E-05 40.2 3.6 57 15-75 55-121 (325)
240 1xjc_A MOBB protein homolog; s 85.7 3.7 0.00013 31.2 7.8 15 30-44 6-20 (169)
241 1gku_B Reverse gyrase, TOP-RG; 85.7 3.1 0.00011 42.0 9.3 74 226-301 97-180 (1054)
242 2r62_A Cell division protease 85.4 0.29 9.8E-06 40.7 1.5 18 28-45 44-61 (268)
243 3dr5_A Putative O-methyltransf 85.4 5.1 0.00017 32.0 8.9 127 7-137 30-166 (221)
244 2yhs_A FTSY, cell division pro 85.3 3.4 0.00012 37.5 8.5 30 30-59 295-327 (503)
245 2gza_A Type IV secretion syste 85.2 0.43 1.5E-05 41.7 2.6 22 24-45 171-192 (361)
246 1p9r_A General secretion pathw 85.2 0.54 1.8E-05 41.9 3.2 30 15-44 152-183 (418)
247 1t5c_A CENP-E protein, centrom 85.1 0.64 2.2E-05 40.3 3.6 39 9-47 46-97 (349)
248 3gbj_A KIF13B protein; kinesin 85.1 0.63 2.2E-05 40.4 3.6 33 16-48 71-113 (354)
249 1c9k_A COBU, adenosylcobinamid 85.1 0.34 1.2E-05 37.5 1.7 41 31-72 2-42 (180)
250 3b6u_A Kinesin-like protein KI 85.1 0.64 2.2E-05 40.6 3.6 58 14-75 78-145 (372)
251 2h58_A Kinesin-like protein KI 85.1 0.65 2.2E-05 39.9 3.6 48 21-75 72-121 (330)
252 2vvg_A Kinesin-2; motor protei 85.0 0.66 2.2E-05 40.2 3.6 40 9-48 58-110 (350)
253 3trf_A Shikimate kinase, SK; a 84.9 0.35 1.2E-05 37.5 1.8 19 28-46 5-23 (185)
254 1xti_A Probable ATP-dependent 84.9 7.5 0.00026 33.8 10.7 72 227-301 75-157 (391)
255 2qor_A Guanylate kinase; phosp 84.9 0.3 1E-05 38.7 1.3 21 25-45 9-29 (204)
256 2nr8_A Kinesin-like protein KI 84.8 0.67 2.3E-05 40.3 3.6 55 17-75 83-147 (358)
257 3lw7_A Adenylate kinase relate 84.8 0.35 1.2E-05 36.9 1.7 18 30-47 3-20 (179)
258 1qhx_A CPT, protein (chloramph 84.7 0.37 1.2E-05 37.1 1.8 18 29-46 4-21 (178)
259 2y65_A Kinesin, kinesin heavy 84.7 0.69 2.4E-05 40.3 3.6 59 14-76 61-129 (365)
260 3dc4_A Kinesin-like protein NO 84.6 0.6 2.1E-05 40.3 3.2 33 14-46 71-113 (344)
261 4etp_A Kinesin-like protein KA 84.5 0.68 2.3E-05 41.0 3.5 25 22-46 133-159 (403)
262 3lre_A Kinesin-like protein KI 84.5 0.65 2.2E-05 40.3 3.4 34 15-48 83-126 (355)
263 1goj_A Kinesin, kinesin heavy 84.5 0.66 2.2E-05 40.3 3.4 57 15-75 58-125 (355)
264 2zfi_A Kinesin-like protein KI 84.4 0.71 2.4E-05 40.3 3.6 55 16-75 68-132 (366)
265 1j8m_F SRP54, signal recogniti 84.4 3 0.0001 35.2 7.4 30 31-60 101-133 (297)
266 1kag_A SKI, shikimate kinase I 84.3 0.46 1.6E-05 36.3 2.2 18 28-45 4-21 (173)
267 2pl3_A Probable ATP-dependent 84.3 4.9 0.00017 32.2 8.6 70 227-301 96-176 (236)
268 2eyu_A Twitching motility prot 84.3 0.33 1.1E-05 40.3 1.3 20 26-45 23-42 (261)
269 1um8_A ATP-dependent CLP prote 84.2 0.49 1.7E-05 41.6 2.6 19 28-46 72-90 (376)
270 1x88_A Kinesin-like protein KI 84.2 0.64 2.2E-05 40.4 3.2 34 15-48 66-109 (359)
271 2gxq_A Heat resistant RNA depe 84.2 4.2 0.00014 31.8 7.9 72 227-302 71-150 (207)
272 3uk6_A RUVB-like 2; hexameric 84.0 0.37 1.3E-05 42.1 1.7 17 29-45 71-87 (368)
273 3a8t_A Adenylate isopentenyltr 84.0 0.41 1.4E-05 41.2 1.8 18 29-46 41-58 (339)
274 3tau_A Guanylate kinase, GMP k 84.0 0.42 1.4E-05 38.0 1.8 19 27-45 7-25 (208)
275 1zp6_A Hypothetical protein AT 83.9 0.34 1.2E-05 37.8 1.2 19 27-45 8-26 (191)
276 4a14_A Kinesin, kinesin-like p 83.9 0.76 2.6E-05 39.7 3.5 33 14-46 60-102 (344)
277 3eaq_A Heat resistant RNA depe 83.8 2.3 7.7E-05 33.8 6.1 57 52-108 30-89 (212)
278 3cob_A Kinesin heavy chain-lik 83.7 0.61 2.1E-05 40.7 2.8 48 22-76 72-121 (369)
279 3iij_A Coilin-interacting nucl 83.7 0.51 1.8E-05 36.4 2.2 20 27-46 10-29 (180)
280 1v8k_A Kinesin-like protein KI 83.7 0.68 2.3E-05 40.9 3.2 34 14-47 131-174 (410)
281 2jgn_A DBX, DDX3, ATP-dependen 83.6 1.8 6.2E-05 33.5 5.4 73 52-132 45-120 (185)
282 2j37_W Signal recognition part 83.6 4 0.00014 37.3 8.3 32 30-61 103-137 (504)
283 3u06_A Protein claret segregat 83.6 0.7 2.4E-05 41.0 3.2 27 21-47 130-158 (412)
284 2pt7_A CAG-ALFA; ATPase, prote 83.6 0.51 1.8E-05 40.6 2.3 20 25-44 168-187 (330)
285 1yks_A Genome polyprotein [con 83.6 2 6.7E-05 38.7 6.3 55 53-108 177-231 (440)
286 2wbe_C Bipolar kinesin KRP-130 83.5 0.73 2.5E-05 40.3 3.3 34 15-48 78-121 (373)
287 3tr0_A Guanylate kinase, GMP k 83.5 0.4 1.4E-05 37.8 1.6 19 27-45 6-24 (205)
288 1ex7_A Guanylate kinase; subst 83.4 0.53 1.8E-05 36.7 2.1 16 29-44 2-17 (186)
289 1e9r_A Conjugal transfer prote 83.2 0.61 2.1E-05 42.0 2.8 40 28-67 53-95 (437)
290 1ly1_A Polynucleotide kinase; 83.1 0.46 1.6E-05 36.5 1.7 16 30-45 4-19 (181)
291 2qmh_A HPR kinase/phosphorylas 83.1 0.41 1.4E-05 37.7 1.3 18 28-45 34-51 (205)
292 1y63_A LMAJ004144AAA protein; 83.0 0.49 1.7E-05 36.8 1.8 18 28-45 10-27 (184)
293 2c9o_A RUVB-like 1; hexameric 82.9 0.44 1.5E-05 43.2 1.7 18 29-46 64-81 (456)
294 2owm_A Nckin3-434, related to 82.8 0.88 3E-05 40.8 3.6 53 16-75 115-177 (443)
295 3bfn_A Kinesin-like protein KI 82.7 0.64 2.2E-05 40.8 2.6 40 9-48 67-119 (388)
296 3kb2_A SPBC2 prophage-derived 82.7 0.49 1.7E-05 36.0 1.7 16 30-45 3-18 (173)
297 2heh_A KIF2C protein; kinesin, 82.6 0.79 2.7E-05 40.2 3.1 34 14-47 111-154 (387)
298 2j41_A Guanylate kinase; GMP, 82.5 0.46 1.6E-05 37.5 1.6 19 27-45 5-23 (207)
299 2ze6_A Isopentenyl transferase 82.5 0.48 1.7E-05 39.0 1.7 15 31-45 4-18 (253)
300 1vec_A ATP-dependent RNA helic 82.5 5.1 0.00017 31.3 7.8 72 227-302 70-152 (206)
301 2oxc_A Probable ATP-dependent 82.4 2.9 0.0001 33.5 6.4 70 227-301 91-171 (230)
302 1z6g_A Guanylate kinase; struc 82.3 0.62 2.1E-05 37.4 2.2 21 25-45 20-40 (218)
303 3a00_A Guanylate kinase, GMP k 82.1 0.62 2.1E-05 36.2 2.1 17 29-45 2-18 (186)
304 3t0q_A AGR253WP; kinesin, alph 81.8 0.65 2.2E-05 40.3 2.3 32 15-46 64-104 (349)
305 4gp7_A Metallophosphoesterase; 81.7 0.47 1.6E-05 36.4 1.3 19 28-46 9-27 (171)
306 1hqc_A RUVB; extended AAA-ATPa 81.6 0.57 1.9E-05 40.1 1.9 17 29-45 39-55 (324)
307 3cm0_A Adenylate kinase; ATP-b 81.5 0.4 1.4E-05 37.2 0.8 19 28-46 4-22 (186)
308 4fcw_A Chaperone protein CLPB; 81.5 0.68 2.3E-05 39.3 2.3 17 29-45 48-64 (311)
309 3ney_A 55 kDa erythrocyte memb 81.4 0.62 2.1E-05 36.7 1.9 19 27-45 18-36 (197)
310 1f9v_A Kinesin-like protein KA 81.4 0.67 2.3E-05 40.1 2.2 32 15-46 63-103 (347)
311 1wrb_A DJVLGB; RNA helicase, D 81.4 13 0.00045 30.0 10.2 71 228-302 100-180 (253)
312 3exa_A TRNA delta(2)-isopenten 81.4 0.57 1.9E-05 39.8 1.7 16 30-45 5-20 (322)
313 1znw_A Guanylate kinase, GMP k 81.3 0.61 2.1E-05 37.0 1.8 22 24-45 16-37 (207)
314 1s96_A Guanylate kinase, GMP k 81.1 0.63 2.1E-05 37.4 1.8 22 24-45 12-33 (219)
315 3foz_A TRNA delta(2)-isopenten 81.0 0.6 2E-05 39.6 1.7 16 30-45 12-27 (316)
316 2x8a_A Nuclear valosin-contain 80.9 0.69 2.4E-05 38.6 2.1 17 29-45 45-61 (274)
317 2rep_A Kinesin-like protein KI 80.8 0.75 2.6E-05 40.2 2.3 40 9-48 85-136 (376)
318 3bor_A Human initiation factor 80.6 7.4 0.00025 31.3 8.3 73 227-302 97-179 (237)
319 2xxa_A Signal recognition part 80.5 3.2 0.00011 37.1 6.4 31 30-60 102-136 (433)
320 4eun_A Thermoresistant glucoki 80.5 0.67 2.3E-05 36.5 1.8 19 27-45 28-46 (200)
321 2ffh_A Protein (FFH); SRP54, s 80.4 6.1 0.00021 35.2 8.1 31 30-60 100-133 (425)
322 1kht_A Adenylate kinase; phosp 80.2 0.67 2.3E-05 36.0 1.7 19 28-46 3-21 (192)
323 1knq_A Gluconate kinase; ALFA/ 80.0 0.58 2E-05 35.8 1.3 18 28-45 8-25 (175)
324 3jvv_A Twitching mobility prot 79.9 0.56 1.9E-05 40.8 1.3 18 28-45 123-140 (356)
325 3ly5_A ATP-dependent RNA helic 79.9 5.8 0.0002 32.6 7.5 72 227-302 125-207 (262)
326 1in4_A RUVB, holliday junction 79.9 0.73 2.5E-05 39.7 2.0 17 29-45 52-68 (334)
327 1g8p_A Magnesium-chelatase 38 79.7 0.58 2E-05 40.5 1.3 18 28-45 45-62 (350)
328 2ewv_A Twitching motility prot 79.6 0.59 2E-05 41.0 1.3 19 27-45 135-153 (372)
329 1gvn_B Zeta; postsegregational 79.6 0.72 2.5E-05 38.8 1.8 16 30-45 35-50 (287)
330 2l8b_A Protein TRAI, DNA helic 79.5 0.9 3.1E-05 35.0 2.1 58 15-72 36-99 (189)
331 2c95_A Adenylate kinase 1; tra 79.5 0.77 2.6E-05 35.8 1.9 22 25-46 6-27 (196)
332 2bwj_A Adenylate kinase 5; pho 79.4 0.77 2.6E-05 35.9 1.8 21 25-45 9-29 (199)
333 2r2a_A Uncharacterized protein 79.3 0.75 2.6E-05 36.3 1.7 15 31-45 8-22 (199)
334 2v6i_A RNA helicase; membrane, 79.1 3.3 0.00011 37.1 6.1 55 53-108 171-225 (431)
335 2rhm_A Putative kinase; P-loop 79.0 0.77 2.6E-05 35.7 1.7 17 29-45 6-22 (193)
336 3pxg_A Negative regulator of g 78.9 0.97 3.3E-05 41.1 2.5 18 28-45 201-218 (468)
337 2r8r_A Sensor protein; KDPD, P 78.7 0.87 3E-05 36.6 1.9 28 30-57 8-38 (228)
338 1via_A Shikimate kinase; struc 78.7 0.89 3E-05 34.8 2.0 17 30-46 6-22 (175)
339 1qde_A EIF4A, translation init 78.7 10 0.00034 30.0 8.4 71 227-302 81-161 (224)
340 1ry6_A Internal kinesin; kines 78.6 1.2 4.1E-05 38.7 2.9 35 14-48 60-105 (360)
341 1wp9_A ATP-dependent RNA helic 78.5 11 0.00036 33.8 9.5 72 226-302 50-131 (494)
342 1g41_A Heat shock protein HSLU 78.4 1.1 3.6E-05 40.3 2.6 18 28-45 50-67 (444)
343 1sxj_C Activator 1 40 kDa subu 78.4 1.5 5.2E-05 37.8 3.5 16 31-46 49-64 (340)
344 2bdt_A BH3686; alpha-beta prot 78.3 0.83 2.8E-05 35.5 1.7 17 30-46 4-20 (189)
345 3t61_A Gluconokinase; PSI-biol 78.3 0.82 2.8E-05 36.0 1.7 17 29-45 19-35 (202)
346 2px0_A Flagellar biosynthesis 78.1 0.99 3.4E-05 38.1 2.2 33 28-60 105-141 (296)
347 3crm_A TRNA delta(2)-isopenten 77.6 0.86 2.9E-05 38.9 1.7 16 30-45 7-22 (323)
348 3i32_A Heat resistant RNA depe 77.6 5 0.00017 33.9 6.4 73 52-132 27-102 (300)
349 3gk5_A Uncharacterized rhodane 77.6 3.3 0.00011 28.7 4.5 42 221-262 48-89 (108)
350 1nks_A Adenylate kinase; therm 77.6 0.88 3E-05 35.3 1.7 16 30-45 3-18 (194)
351 2iyv_A Shikimate kinase, SK; t 77.5 1.1 3.7E-05 34.6 2.2 18 29-46 3-20 (184)
352 2cdn_A Adenylate kinase; phosp 77.5 0.54 1.9E-05 37.0 0.4 18 29-46 21-38 (201)
353 4ag6_A VIRB4 ATPase, type IV s 77.3 1.2 4.2E-05 39.3 2.7 38 27-64 34-74 (392)
354 3uie_A Adenylyl-sulfate kinase 77.1 0.82 2.8E-05 36.0 1.3 19 27-45 24-42 (200)
355 1zuh_A Shikimate kinase; alpha 77.0 0.93 3.2E-05 34.4 1.6 19 29-47 8-26 (168)
356 3fb4_A Adenylate kinase; psych 77.0 0.95 3.2E-05 36.0 1.7 16 31-46 3-18 (216)
357 1tev_A UMP-CMP kinase; ploop, 76.9 0.96 3.3E-05 35.2 1.7 18 29-46 4-21 (196)
358 3lnc_A Guanylate kinase, GMP k 76.7 0.9 3.1E-05 36.7 1.5 19 27-45 26-44 (231)
359 3nwj_A ATSK2; P loop, shikimat 76.6 1.3 4.5E-05 36.3 2.5 19 28-46 48-66 (250)
360 1hv8_A Putative ATP-dependent 76.6 6.5 0.00022 33.8 7.2 75 52-134 237-314 (367)
361 3d3q_A TRNA delta(2)-isopenten 76.5 0.98 3.3E-05 38.9 1.7 16 30-45 9-24 (340)
362 2v54_A DTMP kinase, thymidylat 76.4 0.76 2.6E-05 36.1 1.0 18 28-45 4-21 (204)
363 2chq_A Replication factor C sm 76.4 1.6 5.6E-05 36.9 3.2 28 18-45 22-55 (319)
364 3c8u_A Fructokinase; YP_612366 76.4 0.91 3.1E-05 36.0 1.4 18 28-45 22-39 (208)
365 3dl0_A Adenylate kinase; phosp 76.2 1 3.5E-05 35.8 1.7 16 31-46 3-18 (216)
366 3dkp_A Probable ATP-dependent 76.2 2.1 7.1E-05 34.8 3.7 73 227-302 97-181 (245)
367 1e6c_A Shikimate kinase; phosp 76.1 1.2 4E-05 33.9 2.0 18 29-46 3-20 (173)
368 1tf7_A KAIC; homohexamer, hexa 75.9 4.1 0.00014 37.6 5.9 49 28-77 281-332 (525)
369 1zd8_A GTP:AMP phosphotransfer 75.8 1.1 3.6E-05 36.1 1.7 19 28-46 7-25 (227)
370 1ye8_A Protein THEP1, hypothet 75.7 1.1 3.8E-05 34.6 1.7 15 30-44 2-16 (178)
371 2plr_A DTMP kinase, probable t 75.4 0.87 3E-05 36.0 1.1 18 28-45 4-21 (213)
372 1zak_A Adenylate kinase; ATP:A 75.3 1.3 4.5E-05 35.4 2.1 19 28-46 5-23 (222)
373 2wv9_A Flavivirin protease NS2 75.3 5.4 0.00018 38.0 6.6 55 53-108 410-464 (673)
374 1qf9_A UMP/CMP kinase, protein 75.1 1.1 3.9E-05 34.7 1.7 17 30-46 8-24 (194)
375 3k1j_A LON protease, ATP-depen 75.1 1.9 6.7E-05 40.5 3.5 22 24-45 56-77 (604)
376 2jtq_A Phage shock protein E; 75.0 9.3 0.00032 24.8 6.1 38 226-263 39-76 (85)
377 1aky_A Adenylate kinase; ATP:A 75.0 1.2 4.1E-05 35.6 1.8 19 28-46 4-22 (220)
378 3sr0_A Adenylate kinase; phosp 74.6 1.2 4.1E-05 35.3 1.7 16 31-46 3-18 (206)
379 3tbk_A RIG-I helicase domain; 74.6 6.6 0.00022 36.1 7.0 55 228-286 52-110 (555)
380 3eph_A TRNA isopentenyltransfe 74.3 1.2 4.1E-05 39.3 1.7 16 30-45 4-19 (409)
381 1jjv_A Dephospho-COA kinase; P 74.0 1.3 4.3E-05 35.0 1.7 16 31-46 5-20 (206)
382 2z83_A Helicase/nucleoside tri 74.0 6.2 0.00021 35.6 6.5 55 53-108 190-244 (459)
383 1f2t_A RAD50 ABC-ATPase; DNA d 74.0 1.3 4.5E-05 32.9 1.7 15 30-44 25-39 (149)
384 2vli_A Antibiotic resistance p 73.9 1.1 3.8E-05 34.4 1.3 20 28-47 5-24 (183)
385 3a4m_A L-seryl-tRNA(SEC) kinas 73.8 1.3 4.3E-05 36.6 1.7 18 29-46 5-22 (260)
386 3pxi_A Negative regulator of g 73.8 1.5 5.2E-05 42.5 2.5 18 28-45 201-218 (758)
387 3umf_A Adenylate kinase; rossm 73.4 1.4 4.7E-05 35.3 1.7 17 29-45 30-46 (217)
388 2jaq_A Deoxyguanosine kinase; 73.4 1.3 4.5E-05 34.7 1.7 15 31-45 3-17 (205)
389 1cke_A CK, MSSA, protein (cyti 73.3 1.3 4.5E-05 35.4 1.7 18 29-46 6-23 (227)
390 1ukz_A Uridylate kinase; trans 73.3 1.3 4.6E-05 34.7 1.7 16 30-45 17-32 (203)
391 2i3b_A HCR-ntpase, human cance 73.3 1.6 5.4E-05 34.1 2.1 18 28-45 1-18 (189)
392 2pt5_A Shikimate kinase, SK; a 73.2 1.4 4.7E-05 33.3 1.7 17 30-46 2-18 (168)
393 1m7g_A Adenylylsulfate kinase; 73.0 1.4 4.9E-05 34.9 1.8 20 26-45 23-42 (211)
394 2jlq_A Serine protease subunit 72.9 6.7 0.00023 35.3 6.4 55 53-108 188-242 (451)
395 2wwf_A Thymidilate kinase, put 72.8 1.4 4.9E-05 34.7 1.8 19 27-45 9-27 (212)
396 1nn5_A Similar to deoxythymidy 72.8 1.3 4.5E-05 35.0 1.6 20 27-46 8-27 (215)
397 3tlx_A Adenylate kinase 2; str 72.7 1.2 4E-05 36.4 1.2 18 29-46 30-47 (243)
398 3f9v_A Minichromosome maintena 72.6 1.4 4.7E-05 41.4 1.8 16 30-45 329-344 (595)
399 1e4v_A Adenylate kinase; trans 72.5 1.4 4.9E-05 35.0 1.7 16 31-46 3-18 (214)
400 3asz_A Uridine kinase; cytidin 72.5 1.2 4.2E-05 35.2 1.3 18 28-45 6-23 (211)
401 3l9o_A ATP-dependent RNA helic 72.5 8 0.00027 39.3 7.4 61 215-286 214-274 (1108)
402 2if2_A Dephospho-COA kinase; a 72.4 1.4 4.9E-05 34.6 1.7 16 30-45 3-18 (204)
403 4a2q_A RIG-I, retinoic acid in 72.4 9.6 0.00033 37.2 7.8 55 228-286 296-354 (797)
404 2pez_A Bifunctional 3'-phospho 72.3 1.3 4.4E-05 34.0 1.3 18 28-45 5-22 (179)
405 2yvu_A Probable adenylyl-sulfa 72.3 1.3 4.4E-05 34.3 1.3 18 28-45 13-30 (186)
406 2pbr_A DTMP kinase, thymidylat 72.0 1.5 5.1E-05 34.0 1.7 15 31-45 3-17 (195)
407 2dhr_A FTSH; AAA+ protein, hex 71.9 1.6 5.4E-05 39.9 2.0 17 29-45 65-81 (499)
408 2p5t_B PEZT; postsegregational 71.8 1.1 3.9E-05 36.7 1.0 16 30-45 34-49 (253)
409 4a2p_A RIG-I, retinoic acid in 71.8 8.2 0.00028 35.5 7.0 71 228-302 55-136 (556)
410 2qt1_A Nicotinamide riboside k 71.4 1.6 5.4E-05 34.5 1.7 18 28-45 21-38 (207)
411 2bbw_A Adenylate kinase 4, AK4 71.3 1.6 5.4E-05 35.6 1.7 18 28-45 27-44 (246)
412 3m6a_A ATP-dependent protease 71.2 1.5 5.3E-05 40.6 1.8 18 28-45 108-125 (543)
413 2xb4_A Adenylate kinase; ATP-b 71.2 1.6 5.4E-05 35.0 1.7 16 31-46 3-18 (223)
414 3be4_A Adenylate kinase; malar 71.1 1.7 5.7E-05 34.7 1.8 18 29-46 6-23 (217)
415 1ak2_A Adenylate kinase isoenz 71.1 1.7 5.8E-05 35.1 1.8 19 28-46 16-34 (233)
416 2z0h_A DTMP kinase, thymidylat 70.9 1.7 5.7E-05 33.9 1.7 15 31-45 3-17 (197)
417 3kta_A Chromosome segregation 70.9 1.7 5.7E-05 33.4 1.7 16 30-45 28-43 (182)
418 1nij_A Hypothetical protein YJ 70.7 2.5 8.4E-05 36.1 2.8 15 31-45 7-21 (318)
419 3hix_A ALR3790 protein; rhodan 70.7 6.7 0.00023 26.9 4.7 40 223-262 47-87 (106)
420 1w36_B RECB, exodeoxyribonucle 70.6 3.8 0.00013 42.0 4.6 48 29-76 17-79 (1180)
421 2v9p_A Replication protein E1; 70.6 1.4 4.8E-05 37.3 1.3 34 27-61 125-159 (305)
422 3tif_A Uncharacterized ABC tra 70.6 1.8 6E-05 35.2 1.8 19 27-45 30-48 (235)
423 3iwh_A Rhodanese-like domain p 70.0 2.7 9.2E-05 28.9 2.4 38 225-262 53-90 (103)
424 2i4i_A ATP-dependent RNA helic 69.9 7.9 0.00027 34.1 6.2 57 52-108 275-334 (417)
425 3qf7_A RAD50; ABC-ATPase, ATPa 69.8 1.7 5.9E-05 37.9 1.7 16 30-45 25-40 (365)
426 4a74_A DNA repair and recombin 69.6 1.5 5.2E-05 35.1 1.3 18 28-45 25-42 (231)
427 1sxj_E Activator 1 40 kDa subu 69.6 2.1 7.1E-05 37.0 2.2 16 30-45 38-53 (354)
428 3foj_A Uncharacterized protein 69.0 4.2 0.00014 27.6 3.3 38 225-262 53-90 (100)
429 4h1g_A Maltose binding protein 69.0 3.2 0.00011 39.9 3.5 26 21-46 454-481 (715)
430 1tq1_A AT5G66040, senescence-a 68.9 5.2 0.00018 28.7 3.9 44 220-263 74-118 (129)
431 1sgw_A Putative ABC transporte 68.9 2.3 8E-05 33.9 2.2 19 27-45 34-52 (214)
432 1uf9_A TT1252 protein; P-loop, 68.6 1.9 6.6E-05 33.6 1.7 18 30-47 10-27 (203)
433 4e22_A Cytidylate kinase; P-lo 68.6 2 6.9E-05 35.2 1.8 19 28-46 27-45 (252)
434 1zu4_A FTSY; GTPase, signal re 68.5 2 6.8E-05 36.7 1.8 30 30-59 107-139 (320)
435 3tr6_A O-methyltransferase; ce 68.5 39 0.0013 26.5 9.6 95 13-109 47-149 (225)
436 1nlf_A Regulatory protein REPA 68.5 1.6 5.6E-05 36.4 1.2 21 25-45 27-47 (279)
437 4akg_A Glutathione S-transfera 68.5 2.3 7.9E-05 47.1 2.6 22 25-46 920-941 (2695)
438 4akg_A Glutathione S-transfera 68.4 1.9 6.5E-05 47.7 2.0 20 26-45 1265-1284(2695)
439 2cbz_A Multidrug resistance-as 68.2 2.1 7.2E-05 34.7 1.8 18 27-44 30-47 (237)
440 4fn4_A Short chain dehydrogena 67.9 8.8 0.0003 31.4 5.5 83 26-110 5-94 (254)
441 1gmx_A GLPE protein; transfera 67.7 7.1 0.00024 26.8 4.3 41 223-263 53-94 (108)
442 2fna_A Conserved hypothetical 67.6 3.3 0.00011 35.5 3.1 29 16-45 19-47 (357)
443 2fsf_A Preprotein translocase 67.5 24 0.00082 34.3 9.0 54 227-286 114-171 (853)
444 3auy_A DNA double-strand break 67.2 2.1 7.1E-05 37.5 1.7 15 30-44 27-41 (371)
445 1cr0_A DNA primase/helicase; R 67.2 1.8 6.2E-05 36.4 1.3 35 27-61 34-72 (296)
446 3fht_A ATP-dependent RNA helic 67.2 8.8 0.0003 33.6 5.9 72 53-132 266-340 (412)
447 2oca_A DAR protein, ATP-depend 67.2 17 0.00059 33.1 8.0 69 227-302 156-231 (510)
448 3flh_A Uncharacterized protein 67.0 5.4 0.00018 28.4 3.6 43 220-262 63-107 (124)
449 1rj9_A FTSY, signal recognitio 66.9 2.2 7.6E-05 36.1 1.7 33 28-60 102-137 (304)
450 3b9q_A Chloroplast SRP recepto 66.8 1.9 6.5E-05 36.5 1.3 31 30-60 102-135 (302)
451 2grj_A Dephospho-COA kinase; T 66.7 2.3 8E-05 33.2 1.7 39 30-71 14-52 (192)
452 3eme_A Rhodanese-like domain p 66.5 4.5 0.00015 27.6 3.0 38 225-262 53-90 (103)
453 1rz3_A Hypothetical protein rb 66.5 2.3 7.9E-05 33.4 1.7 16 30-45 24-39 (201)
454 2pcj_A ABC transporter, lipopr 66.5 2.4 8.1E-05 34.1 1.8 18 27-44 29-46 (224)
455 1ltq_A Polynucleotide kinase; 66.2 2.3 7.8E-05 35.8 1.7 16 30-45 4-19 (301)
456 1vht_A Dephospho-COA kinase; s 66.2 2.3 8E-05 33.8 1.7 17 30-46 6-22 (218)
457 3vkg_A Dynein heavy chain, cyt 66.1 2.9 9.8E-05 47.0 2.7 20 27-46 905-924 (3245)
458 1htw_A HI0065; nucleotide-bind 66.0 2.1 7.3E-05 32.2 1.3 18 27-44 32-49 (158)
459 2pze_A Cystic fibrosis transme 66.0 2.5 8.5E-05 34.1 1.8 19 27-45 33-51 (229)
460 3u4q_B ATP-dependent helicase/ 66.0 2.9 9.8E-05 42.9 2.6 31 229-259 343-374 (1166)
461 2ff7_A Alpha-hemolysin translo 65.9 2.5 8.5E-05 34.6 1.8 19 27-45 34-52 (247)
462 3gfo_A Cobalt import ATP-bindi 65.8 2.4 8.4E-05 35.3 1.8 18 28-45 34-51 (275)
463 4gl2_A Interferon-induced heli 65.7 3.1 0.00011 39.8 2.8 71 228-302 56-142 (699)
464 3pey_A ATP-dependent RNA helic 65.7 10 0.00034 33.0 5.9 76 53-136 243-321 (395)
465 2ghi_A Transport protein; mult 65.6 2.5 8.7E-05 34.8 1.8 19 27-45 45-63 (260)
466 3tqc_A Pantothenate kinase; bi 65.6 4.2 0.00014 34.7 3.2 15 31-45 95-109 (321)
467 1s2m_A Putative ATP-dependent 65.4 10 0.00036 33.1 6.0 56 53-108 258-316 (400)
468 1q0u_A Bstdead; DEAD protein, 65.4 7.9 0.00027 30.6 4.7 72 227-302 71-156 (219)
469 2ius_A DNA translocase FTSK; n 65.3 2.6 8.8E-05 38.6 1.9 17 28-44 167-183 (512)
470 3g5j_A Putative ATP/GTP bindin 65.1 9.9 0.00034 27.1 4.9 39 225-263 85-125 (134)
471 2v3c_C SRP54, signal recogniti 65.1 2.5 8.5E-05 37.9 1.8 31 30-60 101-134 (432)
472 2whx_A Serine protease/ntpase/ 65.0 10 0.00036 35.6 6.1 55 53-108 355-409 (618)
473 1g6h_A High-affinity branched- 64.8 2.7 9.1E-05 34.6 1.8 19 27-45 32-50 (257)
474 1tf5_A Preprotein translocase 64.8 30 0.001 33.7 9.1 66 214-286 111-180 (844)
475 3fmo_B ATP-dependent RNA helic 64.8 18 0.00062 30.3 7.1 68 228-302 162-241 (300)
476 3bs4_A Uncharacterized protein 64.8 2.9 0.0001 34.4 2.0 60 21-81 9-76 (260)
477 1odf_A YGR205W, hypothetical 3 64.5 2.6 8.9E-05 35.4 1.7 15 31-45 34-48 (290)
478 3eey_A Putative rRNA methylase 64.4 45 0.0015 25.4 9.0 94 13-109 7-102 (197)
479 1svm_A Large T antigen; AAA+ f 64.3 2.7 9.3E-05 36.8 1.8 18 28-45 169-186 (377)
480 3qks_A DNA double-strand break 64.2 2.7 9.4E-05 33.1 1.7 15 30-44 25-39 (203)
481 3o8b_A HCV NS3 protease/helica 64.2 13 0.00044 35.3 6.4 52 53-108 396-447 (666)
482 1ji0_A ABC transporter; ATP bi 64.2 2.8 9.6E-05 34.1 1.8 19 27-45 31-49 (240)
483 4g1u_C Hemin import ATP-bindin 64.0 2.8 9.6E-05 34.7 1.8 18 28-45 37-54 (266)
484 1uj2_A Uridine-cytidine kinase 63.8 2.8 9.4E-05 34.3 1.7 16 30-45 24-39 (252)
485 1b0u_A Histidine permease; ABC 63.8 2.9 9.8E-05 34.5 1.8 18 28-45 32-49 (262)
486 2yjt_D ATP-dependent RNA helic 67.5 1.5 5E-05 33.4 0.0 56 52-107 29-87 (170)
487 3tqf_A HPR(Ser) kinase; transf 63.6 2.4 8.3E-05 32.4 1.2 18 28-45 16-33 (181)
488 3cbg_A O-methyltransferase; cy 63.6 54 0.0018 26.0 11.0 66 13-78 55-122 (232)
489 2f6r_A COA synthase, bifunctio 63.4 2.8 9.4E-05 35.1 1.7 17 30-46 77-93 (281)
490 1mv5_A LMRA, multidrug resista 63.2 2.5 8.4E-05 34.5 1.3 19 27-45 27-45 (243)
491 1gtv_A TMK, thymidylate kinase 63.0 1.5 5.2E-05 34.7 -0.0 15 31-45 3-17 (214)
492 2j0s_A ATP-dependent RNA helic 63.0 12 0.00041 32.9 5.9 72 53-132 276-350 (410)
493 1vpl_A ABC transporter, ATP-bi 62.9 3.1 0.0001 34.3 1.8 19 27-45 40-58 (256)
494 2qi9_C Vitamin B12 import ATP- 62.6 3.1 0.00011 34.0 1.8 19 27-45 25-43 (249)
495 3r20_A Cytidylate kinase; stru 62.6 3.1 0.0001 33.7 1.7 19 28-46 9-27 (233)
496 2d2e_A SUFC protein; ABC-ATPas 62.6 3.1 0.00011 34.0 1.8 19 27-45 28-46 (250)
497 2zu0_C Probable ATP-dependent 62.5 3.1 0.00011 34.4 1.8 19 27-45 45-63 (267)
498 2h17_A ADP-ribosylation factor 62.5 2.5 8.4E-05 32.3 1.1 25 20-44 13-37 (181)
499 2ixe_A Antigen peptide transpo 62.5 3.1 0.00011 34.5 1.8 19 27-45 44-62 (271)
500 2olj_A Amino acid ABC transpor 62.5 3.1 0.00011 34.3 1.8 18 28-45 50-67 (263)
No 1
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.5e-59 Score=437.24 Aligned_cols=366 Identities=41% Similarity=0.705 Sum_probs=318.4
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHHcCCceE
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGINAE 81 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 81 (374)
.+.|++.|||.+|+|+|.++++.+++++++++.+|||+|||++|+++++....+++|++|+++|+.|+.+.+..+|+...
T Consensus 14 ~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~ 93 (523)
T 1oyw_A 14 KQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQVDQLQANGVAAA 93 (523)
T ss_dssp HHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHSSSEEEEECSCHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHhCCCEEEECChHHHHHHHHHHHHHcCCcEE
Confidence 46788889999999999999999999999999999999999999999988888999999999999999999999999988
Q ss_pred EcCCCCCchhh---hhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHh
Q 037567 82 FLGSAQTDSSV---QTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTF 158 (374)
Q Consensus 82 ~~~~~~~~~~~---~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~ 158 (374)
.+.+....... ......+.++|+++||+++... .....+...++++|||||||.+.+||.++++.+..+..+...
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~--~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~ 171 (523)
T 1oyw_A 94 CLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLD--NFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQR 171 (523)
T ss_dssp EECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTST--THHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHH
T ss_pred EEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCh--HHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHh
Confidence 88776554332 2233456789999999998654 233445557899999999999999999999888888888888
Q ss_pred cCCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEEEeecCCcchHHHHHHHHHHhhcCCCcEEEEecch
Q 037567 159 LLGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238 (374)
Q Consensus 159 ~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~ 238 (374)
+++.+++++|||+++....++...++..++.+...+.+++++.+.+.... ..... +.+++... .++++||||+++
T Consensus 172 ~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~---~~~~~-l~~~l~~~-~~~~~IVf~~sr 246 (523)
T 1oyw_A 172 FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKF---KPLDQ-LMRYVQEQ-RGKSGIIYCNSR 246 (523)
T ss_dssp CTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTEEEEEEECS---SHHHH-HHHHHHHT-TTCCEEEECSSH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCceEEEEEeCC---CHHHH-HHHHHHhc-CCCcEEEEeCCH
Confidence 88999999999999988888899999888888888888888766654432 22233 33333332 678999999999
Q ss_pred hHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCCChhHHHHhhcc
Q 037567 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGR 318 (374)
Q Consensus 239 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR 318 (374)
+.++.+++.|++.++.+..+||+++.++|..+++.|.+|+.+|||||+++++|+|+|++++||++++|.|...|.||+||
T Consensus 247 ~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GR 326 (523)
T 1oyw_A 247 AKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGR 326 (523)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEEeeccCCCcccceeccccchHHHHHHHHHHHHHHHHhhhcccCC
Q 037567 319 CGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLLAAQRYCLLTTCRR 374 (374)
Q Consensus 319 ~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 374 (374)
+||.|++|.+++++++.|....+.++...............+.+|.+||+.+.|||
T Consensus 327 aGR~g~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~m~~~~~~~~crr 382 (523)
T 1oyw_A 327 AGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNAMGAFAEAQTCRR 382 (523)
T ss_dssp SCTTSSCEEEEEEECHHHHHHHHHHHHTSCCSHHHHHHHHHHHHHHHHHTCSSCHH
T ss_pred ccCCCCCceEEEEeCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHhccccHh
Confidence 99999999999999999999888888875555566778889999999999999996
No 2
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2.7e-59 Score=439.40 Aligned_cols=367 Identities=38% Similarity=0.634 Sum_probs=314.6
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHHcCCceE
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGINAE 81 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 81 (374)
.+.|++.|||..|+|+|.++++.+++++++++.+|||+|||++|+++++....++||++|+++|+.|+.+.+..+|+.+.
T Consensus 33 ~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~~g~~lVisP~~~L~~q~~~~l~~~gi~~~ 112 (591)
T 2v1x_A 33 KDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLKQLGISAT 112 (591)
T ss_dssp HHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTSSSEEEEECSCHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHHHhcCCcEE
Confidence 46788889999999999999999999999999999999999999999999889999999999999999999999999988
Q ss_pred EcCCCCCchhhhhh---h--hcCCeeEEEEcCccccc---CchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHH
Q 037567 82 FLGSAQTDSSVQTK---A--ETGYFQLLFMTPEKACI---IPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLD 153 (374)
Q Consensus 82 ~~~~~~~~~~~~~~---~--~~~~~~i~i~T~~~l~~---~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~ 153 (374)
.+.++......... . ..+.++|+++||+++.. +...........++++|||||||.+.+||.++++.+..+.
T Consensus 113 ~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~ 192 (591)
T 2v1x_A 113 MLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALG 192 (591)
T ss_dssp ECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGG
T ss_pred EEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHHHHHH
Confidence 88876655433211 1 24678999999998853 2233333445678999999999999999988888887777
Q ss_pred HHHHhcCCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEEEeecCCcchHHHHHHHHHHhhcCCCcEEE
Q 037567 154 KLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIV 233 (374)
Q Consensus 154 ~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV 233 (374)
.+...+++.++++||||+++.....+...++...+.....+..++++.+.+.............+.+++.....++++||
T Consensus 193 ~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IV 272 (591)
T 2v1x_A 193 ILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGII 272 (591)
T ss_dssp HHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEE
T ss_pred HHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEE
Confidence 77777888999999999999888888889998888888888888888777765544333333444444444446789999
Q ss_pred EecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCCChhHHH
Q 037567 234 YCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYY 313 (374)
Q Consensus 234 f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~ 313 (374)
||++++.++.+++.|++.|+.+..+||+++..+|..+++.|..|+.+|||+|+++++|+|+|++++||++++|.|...|.
T Consensus 273 f~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~ 352 (591)
T 2v1x_A 273 YCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYY 352 (591)
T ss_dssp ECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHH
T ss_pred EeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCCCceEEEEEeeccCCCcccceeccccchHHHHHHHHHHHHHHHHhh-hcccCC
Q 037567 314 QESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLLAAQRYCL-LTTCRR 374 (374)
Q Consensus 314 Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~ 374 (374)
|++||+||.|++|.|++++.+.|......++.... ...+.|.+|..||+ .+.|||
T Consensus 353 Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~Crr 408 (591)
T 2v1x_A 353 QESGRAGRDDMKADCILYYGFGDIFRISSMVVMEN------VGQQKLYEMVSYCQNISKCRR 408 (591)
T ss_dssp HHHTTSCTTSSCEEEEEEECHHHHHHHHHHTTTST------THHHHHHHHHHHHTCSSSCHH
T ss_pred HHhccCCcCCCCceEEEEEChHHHHHHHHHHhhhh------hhHHHHHHHHHHHhcccccHH
Confidence 99999999999999999999999888887775432 24568899999999 579986
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.1e-52 Score=384.12 Aligned_cols=319 Identities=21% Similarity=0.285 Sum_probs=247.0
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcccccc-----------CCcEEEEcchHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVT-----------GKTALVVSPLISLMQDQV 70 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~-----------~~~~lil~P~~~l~~q~~ 70 (374)
.++|.+ +||.+|+|+|.++++.+++++++++.||||||||++|+++++.. ++++||++|+++|+.|+.
T Consensus 68 ~~~l~~-~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~ 146 (434)
T 2db3_A 68 IDNVNK-SGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIF 146 (434)
T ss_dssp HHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHH
T ss_pred HHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHH
Confidence 456666 89999999999999999999999999999999999999887641 568999999999999999
Q ss_pred HHHHHcC----CceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcch
Q 037567 71 MSLKQRG----INAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFR 146 (374)
Q Consensus 71 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~ 146 (374)
+++++++ +.+..+.++...... ......+++|+|+||++|.+++.. ....+.+++++|+||||++.++++.
T Consensus 147 ~~~~~~~~~~~~~~~~~~gg~~~~~~-~~~l~~~~~Ivv~Tp~~l~~~l~~--~~~~l~~~~~lVlDEah~~~~~gf~-- 221 (434)
T 2db3_A 147 NEARKFAFESYLKIGIVYGGTSFRHQ-NECITRGCHVVIATPGRLLDFVDR--TFITFEDTRFVVLDEADRMLDMGFS-- 221 (434)
T ss_dssp HHHHHHTTTSSCCCCEECTTSCHHHH-HHHHTTCCSEEEECHHHHHHHHHT--TSCCCTTCCEEEEETHHHHTSTTTH--
T ss_pred HHHHHHhccCCcEEEEEECCCCHHHH-HHHhhcCCCEEEEChHHHHHHHHh--CCcccccCCeEEEccHhhhhccCcH--
Confidence 9998864 444445544433322 233345689999999998766543 2234677899999999999887643
Q ss_pred HHHHHHHHHHHh---cCCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEe-ccC--CCceeEEEEeecCCcchHHHHHHH
Q 037567 147 LEYKQLDKLRTF---LLGVPFVALTATATEKVRIDIINSLKLKNPYVTIA-SFD--RKNLFYGVKVINRGQSFVDELVQE 220 (374)
Q Consensus 147 ~~~~~~~~~~~~---~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 220 (374)
..+..+... .++.++++||||++..... +...+ +.++..... ... ..++...+.. .........+.+
T Consensus 222 ---~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~-~~~~~-l~~~~~i~~~~~~~~~~~i~~~~~~--~~~~~k~~~l~~ 294 (434)
T 2db3_A 222 ---EDMRRIMTHVTMRPEHQTLMFSATFPEEIQR-MAGEF-LKNYVFVAIGIVGGACSDVKQTIYE--VNKYAKRSKLIE 294 (434)
T ss_dssp ---HHHHHHHHCTTSCSSCEEEEEESCCCHHHHH-HHHTT-CSSCEEEEESSTTCCCTTEEEEEEE--CCGGGHHHHHHH
T ss_pred ---HHHHHHHHhcCCCCCceEEEEeccCCHHHHH-HHHHh-ccCCEEEEeccccccccccceEEEE--eCcHHHHHHHHH
Confidence 334444433 3568899999999887654 33322 233333222 221 1222222222 222233444445
Q ss_pred HHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEE
Q 037567 221 ILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300 (374)
Q Consensus 221 ~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~v 300 (374)
++... ..++||||+++..++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 295 ~l~~~--~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~V 372 (434)
T 2db3_A 295 ILSEQ--ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHV 372 (434)
T ss_dssp HHHHC--CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEE
T ss_pred HHHhC--CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEE
Confidence 55543 3459999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCChhHHHHhhccCCCCCCceEEEEEeecc
Q 037567 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARS 335 (374)
Q Consensus 301 i~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 335 (374)
|++++|.+..+|+||+||+||.|+.|.++++++++
T Consensus 373 I~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~ 407 (434)
T 2db3_A 373 INYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPE 407 (434)
T ss_dssp EESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTT
T ss_pred EEECCCCCHHHHHHHhcccccCCCCCEEEEEEecc
Confidence 99999999999999999999999999999999864
No 4
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.3e-51 Score=377.13 Aligned_cols=332 Identities=21% Similarity=0.269 Sum_probs=254.9
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcccccc------------------------CCcEE
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVT------------------------GKTAL 57 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~------------------------~~~~l 57 (374)
.++|.. +||.+|+|+|.++++.+.+++++++.+|||+|||++|+++++.. .++++
T Consensus 27 ~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 105 (417)
T 2i4i_A 27 MGNIEL-TRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISL 105 (417)
T ss_dssp HHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEE
T ss_pred HHHHHH-CCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEE
Confidence 456666 79999999999999999999999999999999999998887641 25799
Q ss_pred EEcchHHHHHHHHHHHHHc----CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEe
Q 037567 58 VVSPLISLMQDQVMSLKQR----GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVD 133 (374)
Q Consensus 58 il~P~~~l~~q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviD 133 (374)
|++|+++|+.|+.+.+.++ +.....+.++....... .....+++|+|+||+++...+.. ....+..+++||+|
T Consensus 106 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~I~v~Tp~~l~~~l~~--~~~~~~~~~~iViD 182 (417)
T 2i4i_A 106 VLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQI-RDLERGCHLLVATPGRLVDMMER--GKIGLDFCKYLVLD 182 (417)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHH-HHHTTCCSEEEECHHHHHHHHHT--TSBCCTTCCEEEES
T ss_pred EECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHH-HHhhCCCCEEEEChHHHHHHHHc--CCcChhhCcEEEEE
Confidence 9999999999999999875 45555555544333322 22345689999999998765443 22345678999999
Q ss_pred ccchhhcccCcchHHHHHHHHHHHh--cC---CCCeeEEEeecCcccHHHHHHhcCCCCCeEEEec--cCCCceeEEEEe
Q 037567 134 EAHCISEWGHDFRLEYKQLDKLRTF--LL---GVPFVALTATATEKVRIDIINSLKLKNPYVTIAS--FDRKNLFYGVKV 206 (374)
Q Consensus 134 E~h~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 206 (374)
|+|++.++++. ..+..+... .+ ..+++++|||++..........+. ....+.... .....+...+..
T Consensus 183 Eah~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~ 256 (417)
T 2i4i_A 183 EADRMLDMGFE-----PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLD-EYIFLAVGRVGSTSENITQKVVW 256 (417)
T ss_dssp SHHHHHHTTCH-----HHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCS-SCEEEEEC----CCSSEEEEEEE
T ss_pred ChhHhhccCcH-----HHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcC-CCEEEEeCCCCCCccCceEEEEE
Confidence 99999876632 333333332 11 467999999998765543333332 222222211 122233322222
Q ss_pred ecCCcchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEec
Q 037567 207 INRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM 286 (374)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~ 286 (374)
.........+.++++....++++||||++++.++.+++.|++.++.+..+||+++.++|..+++.|++|+.+|||||+
T Consensus 257 --~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~ 334 (417)
T 2i4i_A 257 --VEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA 334 (417)
T ss_dssp --CCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH
T ss_pred --eccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC
Confidence 223445566677777766788999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCccEEEEECCCCChhHHHHhhccCCCCCCceEEEEEeeccCCCcccceec
Q 037567 287 AFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCG 345 (374)
Q Consensus 287 ~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~ 345 (374)
++++|+|+|++++||++++|.+...|+||+||+||.|+.|.+++++++.+...+..+.+
T Consensus 335 ~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~ 393 (417)
T 2i4i_A 335 VAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLD 393 (417)
T ss_dssp HHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHH
T ss_pred hhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998877766654
No 5
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1e-50 Score=368.14 Aligned_cols=323 Identities=15% Similarity=0.203 Sum_probs=250.3
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcccccc------CCcEEEEcchHHHHHHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVT------GKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~------~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
.++|.+ +||.+|+|+|.++++.+.+++++++.+|||+|||++|+++++.. ..+++|++|+++|+.||.+++.+
T Consensus 20 ~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~ 98 (391)
T 1xti_A 20 LRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYER 98 (391)
T ss_dssp HHHHHH-HSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHH
T ss_pred HHHHHH-CCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHH
Confidence 456777 79999999999999999999999999999999999988776642 56899999999999999999987
Q ss_pred c-----CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHH
Q 037567 76 R-----GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYK 150 (374)
Q Consensus 76 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~ 150 (374)
+ +..+..+.++............+.++|+|+||+++...... ....+.+++++|+||||++.++. .+. .
T Consensus 99 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~--~~~~~~~~~~vViDEaH~~~~~~-~~~---~ 172 (391)
T 1xti_A 99 FSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN--KSLNLKHIKHFILDECDKMLEQL-DMR---R 172 (391)
T ss_dssp HTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT--TSSCCTTCSEEEECSHHHHTSSH-HHH---H
T ss_pred HHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHc--CCccccccCEEEEeCHHHHhhcc-chH---H
Confidence 6 56677776665544444444456679999999998765433 22345678999999999987531 111 3
Q ss_pred HHHHHHHhc-CCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccC---CCceeEEEEeecCCcchHHHHHHHHHHhhc
Q 037567 151 QLDKLRTFL-LGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFD---RKNLFYGVKVINRGQSFVDELVQEILKSVA 226 (374)
Q Consensus 151 ~~~~~~~~~-~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (374)
.+..+.... ...+++++|||+++.........+. .+..+...... ......... ..........+.++++..
T Consensus 173 ~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~- 248 (391)
T 1xti_A 173 DVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQ-DPMEIFVDDETKLTLHGLQQYYV--KLKDNEKNRKLFDLLDVL- 248 (391)
T ss_dssp HHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCS-SCEEEECCCCCCCCCTTCEEEEE--ECCGGGHHHHHHHHHHHS-
T ss_pred HHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcC-CCeEEEecCccccCcccceEEEE--EcCchhHHHHHHHHHHhc-
Confidence 334444433 3678999999999876644444333 22222222111 112222211 122333445555555554
Q ss_pred CCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCC
Q 037567 227 GAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCP 306 (374)
Q Consensus 227 ~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p 306 (374)
.++++||||++++.++.+++.|++.+..+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||++++|
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p 328 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMP 328 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCC
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHhhccCCCCCCceEEEEEeecc
Q 037567 307 KTLESYYQESGRCGRDGIASVCWLYYARS 335 (374)
Q Consensus 307 ~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 335 (374)
++...|+||+||+||.|+.|.+++++.+.
T Consensus 329 ~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 357 (391)
T 1xti_A 329 EDSDTYLHRVARAGRFGTKGLAITFVSDE 357 (391)
T ss_dssp SSHHHHHHHHCBCSSSCCCCEEEEEECSH
T ss_pred CCHHHHHHhcccccCCCCceEEEEEEccc
Confidence 99999999999999999999999999875
No 6
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=3.8e-51 Score=373.16 Aligned_cols=328 Identities=18% Similarity=0.304 Sum_probs=250.2
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc------cCCcEEEEcchHHHHHHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV------TGKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~------~~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
.+++.+ +||.+|+|+|.++++.+++++++++.+|||+|||++|+++++. .+.++||++|+++|+.|+.+.+..
T Consensus 49 ~~~l~~-~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 127 (410)
T 2j0s_A 49 LRGIYA-YGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLA 127 (410)
T ss_dssp HHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHH
Confidence 356666 8999999999999999999999999999999999998877663 467899999999999999999987
Q ss_pred cC----CceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHH
Q 037567 76 RG----INAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQ 151 (374)
Q Consensus 76 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~ 151 (374)
++ .......++....... ......++|+|+||+++...+.. .......++++|+||+|++.+++.. ..
T Consensus 128 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ivv~Tp~~l~~~l~~--~~~~~~~~~~vViDEah~~~~~~~~-----~~ 199 (410)
T 2j0s_A 128 LGDYMNVQCHACIGGTNVGEDI-RKLDYGQHVVAGTPGRVFDMIRR--RSLRTRAIKMLVLDEADEMLNKGFK-----EQ 199 (410)
T ss_dssp HTTTTTCCEEEECTTSCHHHHH-HHHHHCCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEETHHHHTSTTTH-----HH
T ss_pred HhccCCeEEEEEECCCCHHHHH-HHhhcCCCEEEcCHHHHHHHHHh--CCccHhheeEEEEccHHHHHhhhhH-----HH
Confidence 64 4444444443332222 22334579999999988765443 2234467899999999999876643 33
Q ss_pred HHHHHHhc-CCCCeeEEEeecCcccHHHHHHhcCCCCCeEEE-ec--cCCCceeEEEEeecCCcchHHHHHHHHHHhhcC
Q 037567 152 LDKLRTFL-LGVPFVALTATATEKVRIDIINSLKLKNPYVTI-AS--FDRKNLFYGVKVINRGQSFVDELVQEILKSVAG 227 (374)
Q Consensus 152 ~~~~~~~~-~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (374)
+..+.... ++.+++++|||++..... +...+ ...+.... .. .....+......... .....+.+.+++... .
T Consensus 200 ~~~i~~~~~~~~~~i~~SAT~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~~~~~-~ 275 (410)
T 2j0s_A 200 IYDVYRYLPPATQVVLISATLPHEILE-MTNKF-MTDPIRILVKRDELTLEGIKQFFVAVER-EEWKFDTLCDLYDTL-T 275 (410)
T ss_dssp HHHHHTTSCTTCEEEEEESCCCHHHHT-TGGGT-CSSCEEECCCGGGCSCTTEEEEEEEESS-TTHHHHHHHHHHHHH-T
T ss_pred HHHHHHhCccCceEEEEEcCCCHHHHH-HHHHH-cCCCEEEEecCccccCCCceEEEEEeCc-HHhHHHHHHHHHHhc-C
Confidence 44444444 367899999999876432 22222 22232222 11 122233333332222 233444555555554 5
Q ss_pred CCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCC
Q 037567 228 AGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPK 307 (374)
Q Consensus 228 ~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~ 307 (374)
.+++||||++++.++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||++++|.
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~ 355 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPN 355 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCS
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhhccCCCCCCceEEEEEeeccCCCcccc
Q 037567 308 TLESYYQESGRCGRDGIASVCWLYYARSNFAKGDF 342 (374)
Q Consensus 308 s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~ 342 (374)
+...|+||+||+||.|+.|.+++++.+.+...++.
T Consensus 356 s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~ 390 (410)
T 2j0s_A 356 NRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 390 (410)
T ss_dssp SHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHH
T ss_pred CHHHHHHhcccccCCCCceEEEEEecHHHHHHHHH
Confidence 99999999999999999999999999887554443
No 7
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.4e-50 Score=381.95 Aligned_cols=338 Identities=20% Similarity=0.262 Sum_probs=255.2
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHH--cCCCEEEEccCCCCchhhhhcccccc----------CCcEEEEcchHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRII--EKRDCLVVMATGSGKSLCYQLPPLVT----------GKTALVVSPLISLMQDQ 69 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~--~~~~~l~~a~tGsGKT~~~~l~~~~~----------~~~~lil~P~~~l~~q~ 69 (374)
.+++.+ +||.+|+|+|.++++.++ +++++++.||||||||++|+++++.. ..++||++|+++|+.|+
T Consensus 84 ~~~l~~-~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~ 162 (563)
T 3i5x_A 84 HKAITR-MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQI 162 (563)
T ss_dssp HHHHHT-TCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHH
T ss_pred HHHHHH-CCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHH
Confidence 356666 799999999999999999 67899999999999999999887752 34899999999999999
Q ss_pred HHHHHHc--------CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcc
Q 037567 70 VMSLKQR--------GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEW 141 (374)
Q Consensus 70 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~ 141 (374)
.+.++++ +.......++..............++|+|+||+++...+... ....+..+++||+||||++.++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-~~~~~~~~~~lViDEah~l~~~ 241 (563)
T 3i5x_A 163 EAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY-SNKFFRFVDYKVLDEADRLLEI 241 (563)
T ss_dssp HHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH-HHHHCTTCCEEEEETHHHHTST
T ss_pred HHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhc-cccccccceEEEEeCHHHHhcc
Confidence 9999874 223444444444444444444556899999999997766543 2345678999999999999987
Q ss_pred cCcchHHHHHHHHHHHhc-----CCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEecc------CCCceeEEEEeecCC
Q 037567 142 GHDFRLEYKQLDKLRTFL-----LGVPFVALTATATEKVRIDIINSLKLKNPYVTIASF------DRKNLFYGVKVINRG 210 (374)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~-----~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 210 (374)
+ +...+..+....... ++.++++||||+++.... +...+...+..+..... ....+..........
T Consensus 242 ~--f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (563)
T 3i5x_A 242 G--FRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQK-LANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 318 (563)
T ss_dssp T--THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHH-HTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESST
T ss_pred c--hHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHH-HHHHhcCCCceEEEeccCCCCccccccCceEEEECchh
Confidence 7 334444443333221 256899999999987653 23322222222222111 112233333333333
Q ss_pred cchHHHHHHHHH---HhhcCCCcEEEEecchhHHHHHHHHHHHc---CCceeeeecCCChHHHHHHHHhhhcCCeeEEEE
Q 037567 211 QSFVDELVQEIL---KSVAGAGSIIVYCMTIKDVEEISKALKQL---GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVA 284 (374)
Q Consensus 211 ~~~~~~~~~~~~---~~~~~~~~~lVf~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~ 284 (374)
.......+..+. .....+.++||||+++..++.+++.|++. ++.+..+||+++..+|..+++.|++|+.+||||
T Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLva 398 (563)
T 3i5x_A 319 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVC 398 (563)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEE
T ss_pred HhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 333333333333 33346789999999999999999999986 889999999999999999999999999999999
Q ss_pred eccccccccccCccEEEEECCCCChhHHHHhhccCCCCCCceEEEEEeeccCCCccccee
Q 037567 285 TMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYC 344 (374)
Q Consensus 285 t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~ 344 (374)
|+++++|+|+|++++||++++|.++..|+||+||+||.|+.|.+++++.+.+...++.+.
T Consensus 399 T~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~ 458 (563)
T 3i5x_A 399 TDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELE 458 (563)
T ss_dssp CGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHH
T ss_pred cchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999877666664
No 8
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=4.1e-50 Score=380.49 Aligned_cols=338 Identities=20% Similarity=0.263 Sum_probs=255.1
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHH--cCCCEEEEccCCCCchhhhhcccccc----------CCcEEEEcchHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRII--EKRDCLVVMATGSGKSLCYQLPPLVT----------GKTALVVSPLISLMQDQ 69 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~--~~~~~l~~a~tGsGKT~~~~l~~~~~----------~~~~lil~P~~~l~~q~ 69 (374)
.+++.+ +||..|+|+|.++++.++ +++++++.||||+|||++|+++++.. ..++||++|+++|+.|+
T Consensus 33 ~~~l~~-~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~ 111 (579)
T 3sqw_A 33 HKAITR-MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQI 111 (579)
T ss_dssp HHHHHT-TTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHH
T ss_pred HHHHHH-CCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHH
Confidence 456666 899999999999999999 67899999999999999999887741 35899999999999999
Q ss_pred HHHHHHcC--------CceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcc
Q 037567 70 VMSLKQRG--------INAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEW 141 (374)
Q Consensus 70 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~ 141 (374)
.+.+.++. .......++..............++|+|+||+++..++... ....+..+++||+||||++.++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~-~~~~~~~~~~lViDEah~l~~~ 190 (579)
T 3sqw_A 112 EAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY-SNKFFRFVDYKVLDEADRLLEI 190 (579)
T ss_dssp HHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH-HHHHCTTCCEEEEETHHHHTST
T ss_pred HHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhc-cccccccCCEEEEEChHHhhcC
Confidence 99998751 23344444444344444444456899999999997766542 2445678999999999999987
Q ss_pred cCcchHHHHHHHHHHHhcC-----CCCeeEEEeecCcccHHHHHHhcCCCCCeEEEecc------CCCceeEEEEeecCC
Q 037567 142 GHDFRLEYKQLDKLRTFLL-----GVPFVALTATATEKVRIDIINSLKLKNPYVTIASF------DRKNLFYGVKVINRG 210 (374)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~-----~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 210 (374)
+ +...+..+........ +.++++||||+++.... +...+...+..+..... ....+..........
T Consensus 191 g--f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 267 (579)
T 3sqw_A 191 G--FRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQK-LANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 267 (579)
T ss_dssp T--THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHH-HTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESST
T ss_pred C--CHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHH-HHHHHcCCCceEEEeecCccccccccccceEEEEecch
Confidence 7 3444444443333222 56899999999987653 22222222222222111 112233333333333
Q ss_pred cchHHHHHHHHH---HhhcCCCcEEEEecchhHHHHHHHHHHHc---CCceeeeecCCChHHHHHHHHhhhcCCeeEEEE
Q 037567 211 QSFVDELVQEIL---KSVAGAGSIIVYCMTIKDVEEISKALKQL---GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVA 284 (374)
Q Consensus 211 ~~~~~~~~~~~~---~~~~~~~~~lVf~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~ 284 (374)
.......+..+. .....+.++||||+++..++.+++.|++. ++.+..+||+++..+|..+++.|++|+.+||||
T Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVa 347 (579)
T 3sqw_A 268 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVC 347 (579)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEE
T ss_pred hhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEE
Confidence 333333333333 33346789999999999999999999987 889999999999999999999999999999999
Q ss_pred eccccccccccCccEEEEECCCCChhHHHHhhccCCCCCCceEEEEEeeccCCCccccee
Q 037567 285 TMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYC 344 (374)
Q Consensus 285 t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~ 344 (374)
|+++++|+|+|++++||++++|.++..|+||+||+||.|+.|.+++++.+.+...++.+.
T Consensus 348 T~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~ 407 (579)
T 3sqw_A 348 TDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELE 407 (579)
T ss_dssp CGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHH
T ss_pred cchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999876665553
No 9
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.2e-51 Score=375.33 Aligned_cols=329 Identities=19% Similarity=0.235 Sum_probs=238.5
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc------cCCcEEEEcchHHHHHHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV------TGKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~------~~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
.+.+.+ +||.+|+++|.++++.+++++++++.+|||+|||++|+++++. ...+++|++|+++|+.|+.+.+..
T Consensus 52 ~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 130 (414)
T 3eiq_A 52 LRGIYA-YGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMA 130 (414)
T ss_dssp HHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHH-cCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHH
Confidence 345666 8999999999999999999999999999999999998877664 467899999999999999999987
Q ss_pred c----CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHH
Q 037567 76 R----GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQ 151 (374)
Q Consensus 76 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~ 151 (374)
+ +.......++..............++|+|+||+++...+.. .......+++||+||+|++.+++.. ..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~--~~~~~~~~~~vViDEah~~~~~~~~-----~~ 203 (414)
T 3eiq_A 131 LGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR--RYLSPKYIKMFVLDEADEMLSRGFK-----DQ 203 (414)
T ss_dssp HGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHH--TSSCSTTCCEEEECSHHHHHHTTTH-----HH
T ss_pred HhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHc--CCcccccCcEEEEECHHHhhccCcH-----HH
Confidence 6 34445555544444444444446789999999998665443 2234566899999999998876643 33
Q ss_pred HHHHHHhc-CCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEe-c--cCCCceeEEEEeecCCcchHHHHHHHHHHhhcC
Q 037567 152 LDKLRTFL-LGVPFVALTATATEKVRIDIINSLKLKNPYVTIA-S--FDRKNLFYGVKVINRGQSFVDELVQEILKSVAG 227 (374)
Q Consensus 152 ~~~~~~~~-~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (374)
+..+.... ++.++++||||++..... ....+. ..+..... . .....+...... ..........+.++++.. .
T Consensus 204 ~~~~~~~~~~~~~~i~~SAT~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-~ 279 (414)
T 3eiq_A 204 IYDIFQKLNSNTQVVLLSATMPSDVLE-VTKKFM-RDPIRILVKKEELTLEGIRQFYIN-VEREEWKLDTLCDLYETL-T 279 (414)
T ss_dssp HHHHHTTSCTTCEEEEECSCCCHHHHH-HHTTTC-SSCEEECCCCCCCCTTSCCEEEEE-CSSSTTHHHHHHHHHHSS-C
T ss_pred HHHHHHhCCCCCeEEEEEEecCHHHHH-HHHHHc-CCCEEEEecCCccCCCCceEEEEE-eChHHhHHHHHHHHHHhC-C
Confidence 44444443 478899999999876653 223222 22222221 1 112222222222 222333455566666654 6
Q ss_pred CCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCC
Q 037567 228 AGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPK 307 (374)
Q Consensus 228 ~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~ 307 (374)
.+++||||++++.++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||++++|.
T Consensus 280 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~ 359 (414)
T 3eiq_A 280 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT 359 (414)
T ss_dssp CSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCS
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhhccCCCCCCceEEEEEeeccCCCcccc
Q 037567 308 TLESYYQESGRCGRDGIASVCWLYYARSNFAKGDF 342 (374)
Q Consensus 308 s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~ 342 (374)
+..+|+||+||+||.|+.|.+++++++.+...++.
T Consensus 360 s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~ 394 (414)
T 3eiq_A 360 NRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRD 394 (414)
T ss_dssp STHHHHHHSCCC-------CEEEEECSTHHHHHHH
T ss_pred CHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHH
Confidence 99999999999999999999999999876544433
No 10
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=5.6e-50 Score=364.30 Aligned_cols=330 Identities=19% Similarity=0.250 Sum_probs=250.8
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc------cCCcEEEEcchHHHHHHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV------TGKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~------~~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
.++|.+ +||.+|+|+|.++++.+++++++++.+|||+|||++|+++++. .+.+++|++|+++|+.|+.+.+..
T Consensus 33 ~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 111 (400)
T 1s2m_A 33 LMGIFE-AGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRT 111 (400)
T ss_dssp HHHHHH-TTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHH
Confidence 456666 7999999999999999999999999999999999998877664 356899999999999999999987
Q ss_pred c----CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHH
Q 037567 76 R----GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQ 151 (374)
Q Consensus 76 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~ 151 (374)
+ +..+....++...... .......++|+|+||+++...... ....+.+++++|+||+|++.+.+.. ..
T Consensus 112 ~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~Ivv~T~~~l~~~~~~--~~~~~~~~~~vIiDEaH~~~~~~~~-----~~ 183 (400)
T 1s2m_A 112 LGKHCGISCMVTTGGTNLRDD-ILRLNETVHILVGTPGRVLDLASR--KVADLSDCSLFIMDEADKMLSRDFK-----TI 183 (400)
T ss_dssp HTTTTTCCEEEECSSSCHHHH-HHHTTSCCSEEEECHHHHHHHHHT--TCSCCTTCCEEEEESHHHHSSHHHH-----HH
T ss_pred HhcccCceEEEEeCCcchHHH-HHHhcCCCCEEEEchHHHHHHHHh--CCcccccCCEEEEeCchHhhhhchH-----HH
Confidence 6 4455555544333222 222345689999999988654332 1233567899999999998763321 33
Q ss_pred HHHHHHhcC-CCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEEEeecCCcchHHHHHHHHHHhhcCCCc
Q 037567 152 LDKLRTFLL-GVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGS 230 (374)
Q Consensus 152 ~~~~~~~~~-~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (374)
+..+....+ ..++++||||++......+...+..+.............+....... ........+..++... ..++
T Consensus 184 ~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~k~~~l~~~~~~~-~~~~ 260 (400)
T 1s2m_A 184 IEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFV--EERQKLHCLNTLFSKL-QINQ 260 (400)
T ss_dssp HHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEEC--CGGGHHHHHHHHHHHS-CCSE
T ss_pred HHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEe--chhhHHHHHHHHHhhc-CCCc
Confidence 444444443 57899999999887665444444322111111112222232222222 2233445555665553 6789
Q ss_pred EEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCCChh
Q 037567 231 IIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLE 310 (374)
Q Consensus 231 ~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~ 310 (374)
+||||++++.++.+++.|++.+..+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||++++|.+..
T Consensus 261 ~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~ 340 (400)
T 1s2m_A 261 AIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAE 340 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHH
T ss_pred EEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCCCceEEEEEeeccCCCcccce
Q 037567 311 SYYQESGRCGRDGIASVCWLYYARSNFAKGDFY 343 (374)
Q Consensus 311 ~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~ 343 (374)
.|+||+||+||.|+.|.+++++++.|...++.+
T Consensus 341 ~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i 373 (400)
T 1s2m_A 341 TYLHRIGRSGRFGHLGLAINLINWNDRFNLYKI 373 (400)
T ss_dssp HHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHH
T ss_pred HHHHhcchhcCCCCCceEEEEeccchHHHHHHH
Confidence 999999999999999999999999876544443
No 11
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2e-49 Score=352.42 Aligned_cols=319 Identities=19% Similarity=0.258 Sum_probs=243.4
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHHcC----
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRG---- 77 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~---- 77 (374)
.++|++ +||.+|+|+|.++++.+.+++++++.+|||+|||++++++++..+.+++|++|+++|+.|+.+.+++++
T Consensus 6 ~~~l~~-~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 84 (337)
T 2z0m_A 6 EQAIRE-MGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPTRELTRQVASHIRDIGRYMD 84 (337)
T ss_dssp HHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHHHHHHHhhhcC
Confidence 467776 899999999999999999999999999999999999999999889999999999999999999998753
Q ss_pred CceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHH
Q 037567 78 INAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRT 157 (374)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~ 157 (374)
..+....++......... ...++|+|+||+++...... ......+++++|+||+|++.+++.. ..+..+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~--~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~iViDEah~~~~~~~~-----~~~~~~~~ 155 (337)
T 2z0m_A 85 TKVAEVYGGMPYKAQINR--VRNADIVVATPGRLLDLWSK--GVIDLSSFEIVIIDEADLMFEMGFI-----DDIKIILA 155 (337)
T ss_dssp CCEEEECTTSCHHHHHHH--HTTCSEEEECHHHHHHHHHT--TSCCGGGCSEEEEESHHHHHHTTCH-----HHHHHHHH
T ss_pred CcEEEEECCcchHHHHhh--cCCCCEEEECHHHHHHHHHc--CCcchhhCcEEEEEChHHhhccccH-----HHHHHHHh
Confidence 455555554433332222 23479999999998654332 2223567899999999999876643 33444444
Q ss_pred hcC-CCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEEEeecCCcchHHHHHHHHHHhhcCCCcEEEEec
Q 037567 158 FLL-GVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236 (374)
Q Consensus 158 ~~~-~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~ 236 (374)
..+ ..+++++|||+++.....+...+. .+..........+............ ...+..+ .. ..++++||||+
T Consensus 156 ~~~~~~~~~~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~-~~~~~~lvf~~ 228 (337)
T 2z0m_A 156 QTSNRKITGLFSATIPEEIRKVVKDFIT--NYEEIEACIGLANVEHKFVHVKDDW---RSKVQAL-RE-NKDKGVIVFVR 228 (337)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHSC--SCEEEECSGGGGGEEEEEEECSSSS---HHHHHHH-HT-CCCSSEEEECS
T ss_pred hCCcccEEEEEeCcCCHHHHHHHHHhcC--CceeeecccccCCceEEEEEeChHH---HHHHHHH-Hh-CCCCcEEEEEc
Confidence 444 456778999999876654444433 2222222222333333333322222 2222222 22 46789999999
Q ss_pred chhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCCChhHHHHhh
Q 037567 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQES 316 (374)
Q Consensus 237 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~ 316 (374)
+++.++.+++.|+ .+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||++++|.|+..|.||+
T Consensus 229 ~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~ 304 (337)
T 2z0m_A 229 TRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRI 304 (337)
T ss_dssp CHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHH
T ss_pred CHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhc
Confidence 9999999998886 578999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCceEEEEEeeccCCCcccc
Q 037567 317 GRCGRDGIASVCWLYYARSNFAKGDF 342 (374)
Q Consensus 317 GR~~R~~~~g~~~~~~~~~~~~~~~~ 342 (374)
||+||.|+.|.+++++. .+....+.
T Consensus 305 GR~gR~g~~g~~~~~~~-~~~~~~~~ 329 (337)
T 2z0m_A 305 GRTGRMGRKGEAITFIL-NEYWLEKE 329 (337)
T ss_dssp TTBCGGGCCEEEEEEES-SCHHHHHH
T ss_pred CccccCCCCceEEEEEe-CcHHHHHH
Confidence 99999999999999998 55443333
No 12
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=6e-49 Score=357.02 Aligned_cols=319 Identities=18% Similarity=0.287 Sum_probs=241.7
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcC--CCEEEEccCCCCchhhhhccccc------cCCcEEEEcchHHHHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEK--RDCLVVMATGSGKSLCYQLPPLV------TGKTALVVSPLISLMQDQVMSL 73 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~--~~~l~~a~tGsGKT~~~~l~~~~------~~~~~lil~P~~~l~~q~~~~~ 73 (374)
.+++.+ +||..|+|+|.++++.++++ +++++.+|||+|||++++++++. .+.+++|++|+++|+.|+.+.+
T Consensus 17 ~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 95 (395)
T 3pey_A 17 LKGIYA-MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVV 95 (395)
T ss_dssp HHHHHH-TTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHH
T ss_pred HHHHHH-CCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHH
Confidence 456766 89999999999999999998 89999999999999998877654 3668999999999999999999
Q ss_pred HHcC----CceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhc-ccCcchHH
Q 037567 74 KQRG----INAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISE-WGHDFRLE 148 (374)
Q Consensus 74 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~-~~~~~~~~ 148 (374)
..++ .......+...... ....++|+|+||+++...... ....+.++++||+||+|++.+ .+. .
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~iiv~T~~~l~~~~~~--~~~~~~~~~~iIiDEah~~~~~~~~--~-- 164 (395)
T 3pey_A 96 QEMGKFTKITSQLIVPDSFEKN-----KQINAQVIVGTPGTVLDLMRR--KLMQLQKIKIFVLDEADNMLDQQGL--G-- 164 (395)
T ss_dssp HHHTTTSCCCEEEESTTSSCTT-----SCBCCSEEEECHHHHHHHHHT--TCBCCTTCCEEEEETHHHHHHSTTH--H--
T ss_pred HHHhcccCeeEEEEecCchhhh-----ccCCCCEEEEcHHHHHHHHHc--CCcccccCCEEEEEChhhhcCcccc--H--
Confidence 8864 33333333222111 123579999999988655433 223356789999999999876 232 1
Q ss_pred HHHHHHHHHhc-CCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEec--cCCCceeEEEEeecCCcchHHHHHHHHHHhh
Q 037567 149 YKQLDKLRTFL-LGVPFVALTATATEKVRIDIINSLKLKNPYVTIAS--FDRKNLFYGVKVINRGQSFVDELVQEILKSV 225 (374)
Q Consensus 149 ~~~~~~~~~~~-~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (374)
..+..+.... ++.+++++|||+++..... ..........+.... ........... ...........+..+....
T Consensus 165 -~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 241 (395)
T 3pey_A 165 -DQCIRVKRFLPKDTQLVLFSATFADAVRQY-AKKIVPNANTLELQTNEVNVDAIKQLYM-DCKNEADKFDVLTELYGLM 241 (395)
T ss_dssp -HHHHHHHHTSCTTCEEEEEESCCCHHHHHH-HHHHSCSCEEECCCGGGCSCTTEEEEEE-ECSSHHHHHHHHHHHHTTT
T ss_pred -HHHHHHHHhCCCCcEEEEEEecCCHHHHHH-HHHhCCCCeEEEccccccccccccEEEE-EcCchHHHHHHHHHHHHhc
Confidence 2333333433 3678999999998765543 333322222222211 11222222222 2223334455556665554
Q ss_pred cCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECC
Q 037567 226 AGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGC 305 (374)
Q Consensus 226 ~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~ 305 (374)
.++++||||+++..++.+++.|++.+..+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||++++
T Consensus 242 -~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~ 320 (395)
T 3pey_A 242 -TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDL 320 (395)
T ss_dssp -TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSC
T ss_pred -cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCC
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC------ChhHHHHhhccCCCCCCceEEEEEeeccC
Q 037567 306 PK------TLESYYQESGRCGRDGIASVCWLYYARSN 336 (374)
Q Consensus 306 p~------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 336 (374)
|. |...|+||+||+||.|+.|.+++++.+.+
T Consensus 321 p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 357 (395)
T 3pey_A 321 PTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 357 (395)
T ss_dssp CBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred CCCCcCCCCHHHhhHhccccccCCCCceEEEEEechH
Confidence 98 99999999999999999999999998643
No 13
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.9e-49 Score=356.74 Aligned_cols=326 Identities=22% Similarity=0.287 Sum_probs=247.3
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcC-CCEEEEccCCCCchhhhhccccc-----cCCcEEEEcchHHHHHHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEK-RDCLVVMATGSGKSLCYQLPPLV-----TGKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~-~~~l~~a~tGsGKT~~~~l~~~~-----~~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
.++|++ +||.+|+|+|.++++.++++ +++++.+|||+|||++++++++. .+.+++|++|+++|+.|+.+++..
T Consensus 18 ~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 96 (367)
T 1hv8_A 18 LNAIRN-KGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIES 96 (367)
T ss_dssp HHHHHH-HTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHH
T ss_pred HHHHHH-cCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHH
Confidence 456777 89999999999999999988 68999999999999998777654 367899999999999999999987
Q ss_pred c----CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHH
Q 037567 76 R----GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQ 151 (374)
Q Consensus 76 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~ 151 (374)
+ +..+....++.......... ..++|+|+||+++...... ....+.+++++|+||+|++.+++.. ..
T Consensus 97 ~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~iiv~T~~~l~~~~~~--~~~~~~~~~~iIiDEah~~~~~~~~-----~~ 167 (367)
T 1hv8_A 97 LKGNKNLKIAKIYGGKAIYPQIKAL--KNANIVVGTPGRILDHINR--GTLNLKNVKYFILDEADEMLNMGFI-----KD 167 (367)
T ss_dssp HHCSSCCCEEEECTTSCHHHHHHHH--HTCSEEEECHHHHHHHHHT--TCSCTTSCCEEEEETHHHHHTTTTH-----HH
T ss_pred HhCCCCceEEEEECCcchHHHHhhc--CCCCEEEecHHHHHHHHHc--CCcccccCCEEEEeCchHhhhhchH-----HH
Confidence 5 34444444443332222222 2579999999988654332 2233567899999999999876532 33
Q ss_pred HHHHHHhc-CCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEEEeecCCcchHHHHHHHHHHhhcCCCc
Q 037567 152 LDKLRTFL-LGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGS 230 (374)
Q Consensus 152 ~~~~~~~~-~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (374)
+..+.... ++.+++++|||+++.........++ ........ ....+...... .......+.+..++. ..+.+
T Consensus 168 ~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~l~~~l~--~~~~~ 240 (367)
T 1hv8_A 168 VEKILNACNKDKRILLFSATMPREILNLAKKYMG--DYSFIKAK-INANIEQSYVE--VNENERFEALCRLLK--NKEFY 240 (367)
T ss_dssp HHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCC--SEEEEECC-SSSSSEEEEEE--CCGGGHHHHHHHHHC--STTCC
T ss_pred HHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcC--CCeEEEec-CCCCceEEEEE--eChHHHHHHHHHHHh--cCCCc
Confidence 44444433 4678999999999876544444333 22222111 11222222211 122223334444444 36789
Q ss_pred EEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCCChh
Q 037567 231 IIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLE 310 (374)
Q Consensus 231 ~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~ 310 (374)
+||||++++.++.+++.|++.+..+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||++++|.|+.
T Consensus 241 ~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~ 320 (367)
T 1hv8_A 241 GLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPE 320 (367)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHH
T ss_pred EEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCCCceEEEEEeeccCCCccccee
Q 037567 311 SYYQESGRCGRDGIASVCWLYYARSNFAKGDFYC 344 (374)
Q Consensus 311 ~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~ 344 (374)
+|.||+||+||.|+.|.+++++++.+...+..+.
T Consensus 321 ~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~ 354 (367)
T 1hv8_A 321 SYMHRIGRTGRAGKKGKAISIINRREYKKLRYIE 354 (367)
T ss_dssp HHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHH
T ss_pred HhhhcccccccCCCccEEEEEEcHHHHHHHHHHH
Confidence 9999999999999999999999987765554443
No 14
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.9e-48 Score=355.76 Aligned_cols=321 Identities=17% Similarity=0.219 Sum_probs=239.4
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcC--CCEEEEccCCCCchhhhhccccc------cCCcEEEEcchHHHHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEK--RDCLVVMATGSGKSLCYQLPPLV------TGKTALVVSPLISLMQDQVMSL 73 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~--~~~l~~a~tGsGKT~~~~l~~~~------~~~~~lil~P~~~l~~q~~~~~ 73 (374)
.++|.+ +||..|+|+|.++++.++++ +++++.+|||+|||++|+++++. ...+++|++|+++|+.|+.+.+
T Consensus 37 ~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 115 (412)
T 3fht_A 37 LQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVI 115 (412)
T ss_dssp HHHHHH-TTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHH
T ss_pred HHHHHH-cCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHH
Confidence 456776 89999999999999999987 89999999999999998877663 2458999999999999999888
Q ss_pred HHcC-----CceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhc-ccCcchH
Q 037567 74 KQRG-----INAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISE-WGHDFRL 147 (374)
Q Consensus 74 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~-~~~~~~~ 147 (374)
..++ .......+...... .....++|+|+||+++...+... ....+.++++||+||+|++.+ .+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ivv~T~~~l~~~~~~~-~~~~~~~~~~iViDEah~~~~~~~~~--- 187 (412)
T 3fht_A 116 EQMGKFYPELKLAYAVRGNKLER----GQKISEQIVIGTPGTVLDWCSKL-KFIDPKKIKVFVLDEADVMIATQGHQ--- 187 (412)
T ss_dssp HHHTTTSTTCCEEEECTTCCCCT----TCCCCCSEEEECHHHHHHHHTTS-CSSCGGGCCEEEEETHHHHHSTTTTH---
T ss_pred HHHHhhcccceEEEeecCcchhh----hhcCCCCEEEECchHHHHHHHhc-CCcChhhCcEEEEeCHHHHhhcCCcH---
Confidence 8753 33343333322211 12345789999999886543221 122346789999999999875 3322
Q ss_pred HHHHHHHHHHhc-CCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEec--cCCCceeEEEEeecCCcchHHHHHHHHHHh
Q 037567 148 EYKQLDKLRTFL-LGVPFVALTATATEKVRIDIINSLKLKNPYVTIAS--FDRKNLFYGVKVINRGQSFVDELVQEILKS 224 (374)
Q Consensus 148 ~~~~~~~~~~~~-~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (374)
..+..+.... ++.+++++|||+++.........+. ....+.... .....+...... ..........+..++..
T Consensus 188 --~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 263 (412)
T 3fht_A 188 --DQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVP-DPNVIKLKREEETLDTIKQYYVL-CSSRDEKFQALCNLYGA 263 (412)
T ss_dssp --HHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSS-SCEEECCCGGGSSCTTEEEEEEE-CSSHHHHHHHHHHHHHH
T ss_pred --HHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcC-CCeEEeeccccccccCceEEEEE-cCChHHHHHHHHHHHhh
Confidence 2223333333 3678999999999876543333332 222222111 112222222222 22233344455555554
Q ss_pred hcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEEC
Q 037567 225 VAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYG 304 (374)
Q Consensus 225 ~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~ 304 (374)
. .++++||||+++..++.+++.|.+.+..+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||+++
T Consensus 264 ~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~ 342 (412)
T 3fht_A 264 I-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFD 342 (412)
T ss_dssp H-SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESS
T ss_pred c-CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEEC
Confidence 3 678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC------CChhHHHHhhccCCCCCCceEEEEEeeccC
Q 037567 305 CP------KTLESYYQESGRCGRDGIASVCWLYYARSN 336 (374)
Q Consensus 305 ~p------~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 336 (374)
+| .+..+|+||+||+||.|+.|.+++++++.+
T Consensus 343 ~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 380 (412)
T 3fht_A 343 LPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 380 (412)
T ss_dssp CCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred CCCCCCCCcchheeecccCcccCCCCCceEEEEEcChh
Confidence 99 467899999999999999999999998653
No 15
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.6e-50 Score=367.21 Aligned_cols=335 Identities=19% Similarity=0.232 Sum_probs=128.4
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc------cCCcEEEEcchHHHHHHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV------TGKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~------~~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
.+++.. +||.+|+|+|.++++.+++++++++.+|||+|||++|+++++. .+.+++|++|+++|+.|+.+.+.+
T Consensus 33 ~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~ 111 (394)
T 1fuu_A 33 LRGVFG-YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMA 111 (394)
T ss_dssp HHHHHH-HTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHH
Confidence 456666 8999999999999999999999999999999999998877664 366899999999999999999887
Q ss_pred c----CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHH
Q 037567 76 R----GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQ 151 (374)
Q Consensus 76 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~ 151 (374)
+ +..+....++.......... ..++|+|+||+++...... ......+++++|+||+|++.+++.. ..
T Consensus 112 ~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~vIiDEah~~~~~~~~-----~~ 182 (394)
T 1fuu_A 112 LAFHMDIKVHACIGGTSFVEDAEGL--RDAQIVVGTPGRVFDNIQR--RRFRTDKIKMFILDEADEMLSSGFK-----EQ 182 (394)
T ss_dssp HTTTSCCCEEEECSSCCHHHHHHHH--HHCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEETHHHHHHTTCH-----HH
T ss_pred HhccCCeeEEEEeCCCchHHHHhhc--CCCCEEEECHHHHHHHHHh--CCcchhhCcEEEEEChHHhhCCCcH-----HH
Confidence 5 45555555544333222222 1478999999988654332 2233467899999999999776533 33
Q ss_pred HHHHHHhc-CCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccC--CCceeEEEEeecCCcchHHHHHHHHHHhhcCC
Q 037567 152 LDKLRTFL-LGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFD--RKNLFYGVKVINRGQSFVDELVQEILKSVAGA 228 (374)
Q Consensus 152 ~~~~~~~~-~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (374)
+..+.... ++.+++++|||+++.........+. .+..+...... ...+....... .........+.++++.. ..
T Consensus 183 ~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~ 259 (394)
T 1fuu_A 183 IYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMR-NPVRILVKKDELTLEGIKQFYVNV-EEEEYKYECLTDLYDSI-SV 259 (394)
T ss_dssp HHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCC-SCEEEEECC------------------------------------
T ss_pred HHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcC-CCeEEEecCccccCCCceEEEEEc-CchhhHHHHHHHHHhcC-CC
Confidence 33343333 4678999999999865543333332 22222221111 11111111111 11111233444444443 56
Q ss_pred CcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCCC
Q 037567 229 GSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKT 308 (374)
Q Consensus 229 ~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s 308 (374)
+++||||++++.++.+++.|++.+..+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||++++|.+
T Consensus 260 ~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s 339 (394)
T 1fuu_A 260 TQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPAN 339 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhccCCCCCCceEEEEEeeccCCCcccceeccccc
Q 037567 309 LESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQT 349 (374)
Q Consensus 309 ~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 349 (374)
...|+||+||+||.|+.|.+++++++.+...++.+......
T Consensus 340 ~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~ 380 (394)
T 1fuu_A 340 KENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYST 380 (394)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCC
Confidence 99999999999999999999999999998877777654333
No 16
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=2.5e-49 Score=367.66 Aligned_cols=329 Identities=16% Similarity=0.205 Sum_probs=122.5
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcC--CCEEEEccCCCCchhhhhcccccc------CCcEEEEcchHHHHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEK--RDCLVVMATGSGKSLCYQLPPLVT------GKTALVVSPLISLMQDQVMSL 73 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~--~~~l~~a~tGsGKT~~~~l~~~~~------~~~~lil~P~~~l~~q~~~~~ 73 (374)
.++|.+ +||..|+|+|.++++.++++ +++++.||||||||++|+++++.. .+++||++|+++|+.|+.+.+
T Consensus 104 ~~~l~~-~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~ 182 (479)
T 3fmp_B 104 LQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVI 182 (479)
T ss_dssp HHHHHH-TTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHH
T ss_pred HHHHHH-cCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHH
Confidence 456776 89999999999999999987 899999999999999998887642 348999999999999998887
Q ss_pred HHc-----CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhc-ccCcchH
Q 037567 74 KQR-----GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISE-WGHDFRL 147 (374)
Q Consensus 74 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~-~~~~~~~ 147 (374)
..+ +.......+...... .....++|+|+||+++..++... ....+.++++||+||+|.+.+ .+..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Ivv~Tp~~l~~~l~~~-~~~~~~~~~~iViDEah~~~~~~~~~--- 254 (479)
T 3fmp_B 183 EQMGKFYPELKLAYAVRGNKLER----GQKISEQIVIGTPGTVLDWCSKL-KFIDPKKIKVFVLDEADVMIATQGHQ--- 254 (479)
T ss_dssp HHHHTTSTTCCEEEESTTCCCCT----TCCCCCSEEEECHHHHHHHHTTS-CCCCGGGCCEEEECCHHHHHTSTTHH---
T ss_pred HHHHhhCCCceEEEEeCCccccc----cccCCCCEEEECchHHHHHHHhc-CCcCcccCCEEEEECHHHHhhcCCcH---
Confidence 764 233333333222111 11234689999999986544321 123347789999999999875 2321
Q ss_pred HHHHHHHHHHhc-CCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccC---CCceeEEEEeecCCcchHHHHHHHHHH
Q 037567 148 EYKQLDKLRTFL-LGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFD---RKNLFYGVKVINRGQSFVDELVQEILK 223 (374)
Q Consensus 148 ~~~~~~~~~~~~-~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (374)
..+..+.... ++.+++++|||++..........+ ..+........ ...+......... .......+..++.
T Consensus 255 --~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 329 (479)
T 3fmp_B 255 --DQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVV--PDPNVIKLKREEETLDTIKQYYVLCSS-RDEKFQALCNLYG 329 (479)
T ss_dssp --HHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHS--SSEEEEEEC--------------------------------
T ss_pred --HHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHc--CCCeEEeccccccCcCCceEEEEEeCC-HHHHHHHHHHHHh
Confidence 2223333333 367899999999987654222222 22222221111 1111111111111 1122223333333
Q ss_pred hhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEE
Q 037567 224 SVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHY 303 (374)
Q Consensus 224 ~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~ 303 (374)
.. ..+++||||+++..++.+++.|...+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 330 ~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~ 408 (479)
T 3fmp_B 330 AI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINF 408 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEe
Confidence 32 56789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC------ChhHHHHhhccCCCCCCceEEEEEeeccC-CCcccceec
Q 037567 304 GCPK------TLESYYQESGRCGRDGIASVCWLYYARSN-FAKGDFYCG 345 (374)
Q Consensus 304 ~~p~------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~-~~~~~~~~~ 345 (374)
++|. +...|+||+||+||.|+.|.+++++++.+ ...++.+.+
T Consensus 409 d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~ 457 (479)
T 3fmp_B 409 DLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQE 457 (479)
T ss_dssp -------------------------------------------------
T ss_pred cCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHH
Confidence 9994 66899999999999999999999998765 444444443
No 17
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=3.3e-47 Score=347.21 Aligned_cols=308 Identities=21% Similarity=0.261 Sum_probs=231.1
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc---cCCcEEEEcchHHHHHHHHHHHHHc--
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV---TGKTALVVSPLISLMQDQVMSLKQR-- 76 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~---~~~~~lil~P~~~l~~q~~~~~~~~-- 76 (374)
.+.|++.+|| +|+|+|.++++.+++++++++.+|||||||++|+++++. .+.+++|++|+++|+.|+.+.++.+
T Consensus 11 ~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 89 (414)
T 3oiy_A 11 RSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLAD 89 (414)
T ss_dssp HHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHcc
Confidence 3567888899 699999999999999999999999999999988877665 6889999999999999999999985
Q ss_pred -CCceEEcCCCCCc---hhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhccc---------C
Q 037567 77 -GINAEFLGSAQTD---SSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWG---------H 143 (374)
Q Consensus 77 -~~~~~~~~~~~~~---~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~---------~ 143 (374)
++.+..+.++... .........+.++|+|+||+++...+. .....++++||+||+|++.+++ .
T Consensus 90 ~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~----~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~ 165 (414)
T 3oiy_A 90 EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNRE----KLSQKRFDFVFVDDVDAVLKASRNIDTLLMMV 165 (414)
T ss_dssp SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHH----HHTTCCCSEEEESCHHHHHHCHHHHHHHHHHT
T ss_pred CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHH----HhccccccEEEEeChHhhhhccchhhhHHhhc
Confidence 5677777776655 223334445568999999999876543 3556789999999999987644 2
Q ss_pred cchHHHHHHHHHHHhc------------CCCCeeEEEeecCc-ccHHHHHH-hcCCCCCeEEEeccCCCceeEEEEeecC
Q 037567 144 DFRLEYKQLDKLRTFL------------LGVPFVALTATATE-KVRIDIIN-SLKLKNPYVTIASFDRKNLFYGVKVINR 209 (374)
Q Consensus 144 ~~~~~~~~~~~~~~~~------------~~~~~i~~SaT~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (374)
.+... .+..+...+ ++.+++++|||+.+ .....+.. .+...... ......++....... .
T Consensus 166 ~~~~~--~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~-~ 239 (414)
T 3oiy_A 166 GIPEE--IIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGR---LVSVARNITHVRISS-R 239 (414)
T ss_dssp TCCHH--HHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSSC---CCCCCCSEEEEEESS-C
T ss_pred CCcHH--HHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcCc---cccccccchheeecc-C
Confidence 22222 023333322 56789999999544 33322222 22211111 111112222222111 1
Q ss_pred CcchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCcee-eeecCCChHHHHHHHHhhhcCCeeEEEE----
Q 037567 210 GQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAG-TYHGQMGSKAREEAHRLFIRDEIRVMVA---- 284 (374)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~r~~~~~~f~~g~~~ilv~---- 284 (374)
..+.+.++++. .++++||||+++..++.+++.|++.++.+. .+||+ +|. ++.|++|+.+||||
T Consensus 240 ----~~~~l~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~ 307 (414)
T 3oiy_A 240 ----SKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAY 307 (414)
T ss_dssp ----CHHHHHHHHHH--HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCT
T ss_pred ----HHHHHHHHHHH--cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecCc
Confidence 22334444444 358999999999999999999999999998 88885 444 99999999999999
Q ss_pred eccccccccccC-ccEEEEECCC--CChhHHHHhhccCCCCC----CceEEEEEe
Q 037567 285 TMAFGMGIDKPD-VRHVIHYGCP--KTLESYYQESGRCGRDG----IASVCWLYY 332 (374)
Q Consensus 285 t~~~~~G~d~~~-~~~vi~~~~p--~s~~~~~Q~~GR~~R~~----~~g~~~~~~ 332 (374)
|+++++|+|+|+ +++||++++| .+...|+||+||+||.| ..|.+++++
T Consensus 308 T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 308 YGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE 362 (414)
T ss_dssp TCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC
T ss_pred CchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE
Confidence 999999999999 9999999999 99999999999999987 478999988
No 18
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.7e-48 Score=359.49 Aligned_cols=327 Identities=17% Similarity=0.245 Sum_probs=211.4
Q ss_pred hHHHhHcCCCCCchhHHHHHHHHHcC--CCEEEEccCCCCchhhhhccccc------cCCcEEEEcchHHHHHHHHHHHH
Q 037567 3 STLKKYFGYSVFRPYQKDVIQRIIEK--RDCLVVMATGSGKSLCYQLPPLV------TGKTALVVSPLISLMQDQVMSLK 74 (374)
Q Consensus 3 ~~l~~~~~~~~~~~~Q~~~~~~~~~~--~~~l~~a~tGsGKT~~~~l~~~~------~~~~~lil~P~~~l~~q~~~~~~ 74 (374)
+.+.. .|+..|+++|.++++.++++ +++++.+|||||||++|+++++. .+.++||++|+++|+.|+.+.++
T Consensus 132 ~~l~~-~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~ 210 (508)
T 3fho_A 132 XXXXX-XXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVT 210 (508)
T ss_dssp --------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHH
T ss_pred ccccc-ccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHH
Confidence 34445 68889999999999999998 89999999999999998877664 24589999999999999999999
Q ss_pred HcCCceE--EcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhc-ccCcchHHHHH
Q 037567 75 QRGINAE--FLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISE-WGHDFRLEYKQ 151 (374)
Q Consensus 75 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~-~~~~~~~~~~~ 151 (374)
.++.... ......... .......++|+|+||+++...+.. ....+.++++||+||+|++.+ .+. . ..
T Consensus 211 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~Ivv~T~~~l~~~l~~--~~~~~~~~~lIIiDEaH~~~~~~~~--~---~~ 280 (508)
T 3fho_A 211 EMGKYTEVKTAFGIKDSV---PKGAKIDAQIVIGTPGTVMDLMKR--RQLDARDIKVFVLDEADNMLDQQGL--G---DQ 280 (508)
T ss_dssp HHSTTSSCCEEC-------------CCCCSEEEECHHHHHHHHHT--TCSCCTTCCEEEECCHHHHTTC--C--H---HH
T ss_pred HhCCccCeeEEEEeCCcc---cccccCCCCEEEECHHHHHHHHHc--CCccccCCCEEEEechhhhcccCCc--H---HH
Confidence 8743221 111111111 111223579999999988654332 223456789999999999875 332 2 33
Q ss_pred HHHHHHhcC-CCCeeEEEeecCcccHHHHHHhcCCCCCeEEEecc--CCCceeEEEEeecCCcchHHHHHHHHHHhhcCC
Q 037567 152 LDKLRTFLL-GVPFVALTATATEKVRIDIINSLKLKNPYVTIASF--DRKNLFYGVKVINRGQSFVDELVQEILKSVAGA 228 (374)
Q Consensus 152 ~~~~~~~~~-~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (374)
+..+....+ +.+++++|||+++.... +...+......+..... ....+....... .........+..++... .+
T Consensus 281 ~~~i~~~~~~~~~~i~lSAT~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~k~~~l~~ll~~~-~~ 357 (508)
T 3fho_A 281 SMRIKHLLPRNTQIVLFSATFSERVEK-YAERFAPNANEIRLKTEELSVEGIKQLYMDC-QSEEHKYNVLVELYGLL-TI 357 (508)
T ss_dssp HHHHHHHSCTTCEEEEEESCCSTHHHH-HHHHHSTTCEEECCCCCC----CCCCEEEEC---CHHHHHHHHHHHC----C
T ss_pred HHHHHHhCCcCCeEEEEeCCCCHHHHH-HHHHhcCCCeEEEeccccCCcccceEEEEEC-CchHHHHHHHHHHHHhc-CC
Confidence 344444443 67899999999876553 33333322222211111 111111111111 12233344455555543 67
Q ss_pred CcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCC--
Q 037567 229 GSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCP-- 306 (374)
Q Consensus 229 ~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p-- 306 (374)
+++||||+++..++.+++.|.+.+..+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||++++|
T Consensus 358 ~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~ 437 (508)
T 3fho_A 358 GQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLD 437 (508)
T ss_dssp CCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC
T ss_pred CcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----CChhHHHHhhccCCCCCCceEEEEEeec-cCCCcccce
Q 037567 307 ----KTLESYYQESGRCGRDGIASVCWLYYAR-SNFAKGDFY 343 (374)
Q Consensus 307 ----~s~~~~~Q~~GR~~R~~~~g~~~~~~~~-~~~~~~~~~ 343 (374)
.++..|+||+||+||.|+.|.+++++.+ .+...++.+
T Consensus 438 ~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i 479 (508)
T 3fho_A 438 QAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAI 479 (508)
T ss_dssp -----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHH
T ss_pred ccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHH
Confidence 7899999999999999999999999985 444444444
No 19
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=2e-43 Score=342.79 Aligned_cols=317 Identities=20% Similarity=0.279 Sum_probs=231.7
Q ss_pred hHHHhHcCCCCCchhHHHHHHH-HHcCCCEEEEccCCCCchhhhhccccc----cCCcEEEEcchHHHHHHHHHHHHH--
Q 037567 3 STLKKYFGYSVFRPYQKDVIQR-IIEKRDCLVVMATGSGKSLCYQLPPLV----TGKTALVVSPLISLMQDQVMSLKQ-- 75 (374)
Q Consensus 3 ~~l~~~~~~~~~~~~Q~~~~~~-~~~~~~~l~~a~tGsGKT~~~~l~~~~----~~~~~lil~P~~~l~~q~~~~~~~-- 75 (374)
+.+++ +||.+|+|+|.++++. +.++++++++||||||||+++.++++. .+.++++++|+++|+.|+.+.++.
T Consensus 21 ~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~ 99 (715)
T 2va8_A 21 EIIKK-RGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWE 99 (715)
T ss_dssp HHHHT-TSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGG
T ss_pred HHHHh-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhh
Confidence 45555 7999999999999999 778999999999999999998877753 578999999999999999999854
Q ss_pred -cCCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHH
Q 037567 76 -RGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDK 154 (374)
Q Consensus 76 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~ 154 (374)
.|..+....++....... ...++|+|+||+++..++.. ....+.++++||+||+|.+.+.+.. ..+..
T Consensus 100 ~~g~~v~~~~G~~~~~~~~----~~~~~Iiv~Tpe~l~~~~~~--~~~~l~~~~~vIiDE~H~l~~~~~~-----~~l~~ 168 (715)
T 2va8_A 100 LIGFKVAMTSGDYDTDDAW----LKNYDIIITTYEKLDSLWRH--RPEWLNEVNYFVLDELHYLNDPERG-----PVVES 168 (715)
T ss_dssp GGTCCEEECCSCSSSCCGG----GGGCSEEEECHHHHHHHHHH--CCGGGGGEEEEEECSGGGGGCTTTH-----HHHHH
T ss_pred cCCCEEEEEeCCCCCchhh----cCCCCEEEEcHHHHHHHHhC--ChhHhhccCEEEEechhhcCCcccc-----hHHHH
Confidence 367777766654443321 13579999999998766544 2233678899999999998754332 22333
Q ss_pred HHHhcCCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCcee------------EEEEeecCCcch---HHHHHH
Q 037567 155 LRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLF------------YGVKVINRGQSF---VDELVQ 219 (374)
Q Consensus 155 ~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~---~~~~~~ 219 (374)
+....++.++++||||+++. ..+..+++.. ..........+. ............ ......
T Consensus 169 i~~~~~~~~ii~lSATl~n~--~~~~~~l~~~---~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (715)
T 2va8_A 169 VTIRAKRRNLLALSATISNY--KQIAKWLGAE---PVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIA 243 (715)
T ss_dssp HHHHHHTSEEEEEESCCTTH--HHHHHHHTCE---EEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHH
T ss_pred HHHhcccCcEEEEcCCCCCH--HHHHHHhCCC---ccCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHH
Confidence 33333478999999999863 3566666532 111111000000 011111100000 122333
Q ss_pred HHHHhhcCCCcEEEEecchhHHHHHHHHHHHcC------------------------------------CceeeeecCCC
Q 037567 220 EILKSVAGAGSIIVYCMTIKDVEEISKALKQLG------------------------------------VKAGTYHGQMG 263 (374)
Q Consensus 220 ~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~------------------------------------~~~~~~~~~~~ 263 (374)
.+.+....++++||||+++++++.+++.|.+.. ..+..+||+++
T Consensus 244 ~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~ 323 (715)
T 2va8_A 244 YTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLS 323 (715)
T ss_dssp HHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSC
T ss_pred HHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCC
Confidence 333444578999999999999999999998642 24889999999
Q ss_pred hHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEE----EC-------CCCChhHHHHhhccCCCCC--CceEEEE
Q 037567 264 SKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIH----YG-------CPKTLESYYQESGRCGRDG--IASVCWL 330 (374)
Q Consensus 264 ~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~----~~-------~p~s~~~~~Q~~GR~~R~~--~~g~~~~ 330 (374)
.++|..+++.|.+|..+|||||+++++|+|+|++++||+ ++ .|.|..+|.||+|||||.| ..|.|+.
T Consensus 324 ~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~ 403 (715)
T 2va8_A 324 KALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIV 403 (715)
T ss_dssp HHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEE
Confidence 999999999999999999999999999999999999998 87 7889999999999999988 4799999
Q ss_pred EeeccC
Q 037567 331 YYARSN 336 (374)
Q Consensus 331 ~~~~~~ 336 (374)
++...+
T Consensus 404 l~~~~~ 409 (715)
T 2va8_A 404 VVRDKE 409 (715)
T ss_dssp ECSCGG
T ss_pred EeCCch
Confidence 997765
No 20
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=4.5e-44 Score=346.23 Aligned_cols=320 Identities=23% Similarity=0.330 Sum_probs=233.9
Q ss_pred hHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc---cCCcEEEEcchHHHHHHHHHHHHHc---
Q 037567 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV---TGKTALVVSPLISLMQDQVMSLKQR--- 76 (374)
Q Consensus 3 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~---~~~~~lil~P~~~l~~q~~~~~~~~--- 76 (374)
+.|++ +||.+|+|+|.++++.+.+++++++.||||||||+++.++++. ++.+++|++|+++|+.|+.+.++.+
T Consensus 16 ~~l~~-~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~ 94 (702)
T 2p6r_A 16 GILKE-EGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKI 94 (702)
T ss_dssp HHHHC-C---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTT
T ss_pred HHHHh-CCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHHHHHhc
Confidence 45555 7999999999999999999999999999999999998877763 5789999999999999999998643
Q ss_pred CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHH
Q 037567 77 GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR 156 (374)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~ 156 (374)
|..+....++...... ..+.++|+|+||+++..+... ....+.++++||+||+|.+.+++...... ..+..+.
T Consensus 95 g~~v~~~~G~~~~~~~----~~~~~~Iiv~Tpe~l~~~l~~--~~~~l~~~~~vIiDE~H~l~~~~r~~~~~-~ll~~l~ 167 (702)
T 2p6r_A 95 GLRIGISTGDYESRDE----HLGDCDIIVTTSEKADSLIRN--RASWIKAVSCLVVDEIHLLDSEKRGATLE-ILVTKMR 167 (702)
T ss_dssp TCCEEEECSSCBCCSS----CSTTCSEEEEEHHHHHHHHHT--TCSGGGGCCEEEETTGGGGGCTTTHHHHH-HHHHHHH
T ss_pred CCEEEEEeCCCCcchh----hccCCCEEEECHHHHHHHHHc--ChhHHhhcCEEEEeeeeecCCCCcccHHH-HHHHHHH
Confidence 6677766665433322 123679999999998766544 22335788999999999987644331111 1223333
Q ss_pred HhcCCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEE------EeecCC-----cchHHHHHHHHHHhh
Q 037567 157 TFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGV------KVINRG-----QSFVDELVQEILKSV 225 (374)
Q Consensus 157 ~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-----~~~~~~~~~~~~~~~ 225 (374)
...++.++++||||+++. .++..+++.. ..........+...+ ...... .....+.+.+. .
T Consensus 168 ~~~~~~~ii~lSATl~n~--~~~~~~l~~~---~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 239 (702)
T 2p6r_A 168 RMNKALRVIGLSATAPNV--TEIAEWLDAD---YYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEEC---V 239 (702)
T ss_dssp HHCTTCEEEEEECCCTTH--HHHHHHTTCE---EEECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHH---H
T ss_pred hcCcCceEEEECCCcCCH--HHHHHHhCCC---cccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHH---H
Confidence 334578999999999863 3567776532 111111111111100 011100 00023333333 3
Q ss_pred cCCCcEEEEecchhHHHHHHHHHHHc------------------------------CCceeeeecCCChHHHHHHHHhhh
Q 037567 226 AGAGSIIVYCMTIKDVEEISKALKQL------------------------------GVKAGTYHGQMGSKAREEAHRLFI 275 (374)
Q Consensus 226 ~~~~~~lVf~~~~~~~~~l~~~l~~~------------------------------~~~~~~~~~~~~~~~r~~~~~~f~ 275 (374)
.+++++||||++++.++.+++.|.+. +..+..+||+++.++|..+++.|.
T Consensus 240 ~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~ 319 (702)
T 2p6r_A 240 AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFR 319 (702)
T ss_dssp HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHH
T ss_pred hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHH
Confidence 47899999999999999999988753 135788999999999999999999
Q ss_pred cCCeeEEEEeccccccccccCccEEEE----EC---CCCChhHHHHhhccCCCCC--CceEEEEEeeccCCC
Q 037567 276 RDEIRVMVATMAFGMGIDKPDVRHVIH----YG---CPKTLESYYQESGRCGRDG--IASVCWLYYARSNFA 338 (374)
Q Consensus 276 ~g~~~ilv~t~~~~~G~d~~~~~~vi~----~~---~p~s~~~~~Q~~GR~~R~~--~~g~~~~~~~~~~~~ 338 (374)
+|..+|||||+++++|+|+|++++||+ |+ .|.|..+|.||+|||||.| ..|.|+.++...+..
T Consensus 320 ~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~ 391 (702)
T 2p6r_A 320 RGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDRE 391 (702)
T ss_dssp TTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHH
T ss_pred CCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHH
Confidence 999999999999999999999999998 55 6889999999999999988 479999999987743
No 21
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2e-44 Score=349.95 Aligned_cols=321 Identities=17% Similarity=0.149 Sum_probs=212.1
Q ss_pred CCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc-----cC----CcEEEEcchHHHHHHH-HHHHHHcC---Cc
Q 037567 13 VFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV-----TG----KTALVVSPLISLMQDQ-VMSLKQRG---IN 79 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~-----~~----~~~lil~P~~~l~~q~-~~~~~~~~---~~ 79 (374)
+|+|+|.++++.+++++++++.+|||+|||++|+++++. .. .++||++|+++|+.|| .+++++++ ..
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~ 86 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYR 86 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTTSC
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcCce
Confidence 599999999999999999999999999999999888765 12 7899999999999999 99998875 56
Q ss_pred eEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhh----HHHHHhcCccEEEEeccchhhcccCcchHHHHHHHH-
Q 037567 80 AEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISF----WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDK- 154 (374)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~----~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~- 154 (374)
+..+.++........ ...+.++|+|+||+.|...+... .....+..+++|||||||++...+.........+..
T Consensus 87 v~~~~g~~~~~~~~~-~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~ 165 (699)
T 4gl2_A 87 VIGLSGDTQLKISFP-EVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQK 165 (699)
T ss_dssp EEEEC----CCCCHH-HHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHH
T ss_pred EEEEeCCcchhhHHH-hhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHhh
Confidence 666666554433222 22255799999999987655321 122345778999999999985433222111111111
Q ss_pred HHHhc---------CCCCeeEEEeecCccc-------H---HHHHHhcCCCCCeEEEe-------ccCCCceeEEEEe--
Q 037567 155 LRTFL---------LGVPFVALTATATEKV-------R---IDIINSLKLKNPYVTIA-------SFDRKNLFYGVKV-- 206 (374)
Q Consensus 155 ~~~~~---------~~~~~i~~SaT~~~~~-------~---~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-- 206 (374)
..... +..++++|||||.... . ..+...+.......... ....+........
T Consensus 166 ~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~ 245 (699)
T 4gl2_A 166 LKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADAT 245 (699)
T ss_dssp HHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC--
T ss_pred hcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcccc
Confidence 11111 4568999999999741 1 11222222200000000 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 037567 207 -------------------------------------------------------------------------------- 206 (374)
Q Consensus 207 -------------------------------------------------------------------------------- 206 (374)
T Consensus 246 ~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 325 (699)
T 4gl2_A 246 REDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTH 325 (699)
T ss_dssp ---CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred -----------------------------------------------------ecCCcchHHHHHHHHHHhhcCCCcEEE
Q 037567 207 -----------------------------------------------------INRGQSFVDELVQEILKSVAGAGSIIV 233 (374)
Q Consensus 207 -----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~lV 233 (374)
.......+.+++.........++++||
T Consensus 326 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IV 405 (699)
T 4gl2_A 326 LETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGII 405 (699)
T ss_dssp HHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEEE
T ss_pred HHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 000011111222222222112789999
Q ss_pred EecchhHHHHHHHHHHHc------CCceeeeecC--------CChHHHHHHHHhhhcCCeeEEEEeccccccccccCccE
Q 037567 234 YCMTIKDVEEISKALKQL------GVKAGTYHGQ--------MGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299 (374)
Q Consensus 234 f~~~~~~~~~l~~~l~~~------~~~~~~~~~~--------~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~ 299 (374)
||+++..++.+++.|++. |+.+..+||+ ++..+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 406 F~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~ 485 (699)
T 4gl2_A 406 FTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNI 485 (699)
T ss_dssp ECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCC
T ss_pred EECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCE
Confidence 999999999999999987 8999999999 99999999999999999999999999999999999999
Q ss_pred EEEECCCCChhHHHHhhccCCCCCCceEEEEEeeccC
Q 037567 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN 336 (374)
Q Consensus 300 vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 336 (374)
||++++|+|+..|+||+||+||.| +.+++++..++
T Consensus 486 VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~~ 520 (699)
T 4gl2_A 486 VIRYGLVTNEIAMVQARGRARADE--STYVLVAHSGS 520 (699)
T ss_dssp CEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESSS
T ss_pred EEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCCc
Confidence 999999999999999999987654 44444444444
No 22
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2e-43 Score=329.68 Aligned_cols=315 Identities=20% Similarity=0.220 Sum_probs=226.9
Q ss_pred CCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc----cCCcEEEEcchHHHHHHHHHHHHHc-CC---ceEEcC
Q 037567 13 VFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV----TGKTALVVSPLISLMQDQVMSLKQR-GI---NAEFLG 84 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~----~~~~~lil~P~~~l~~q~~~~~~~~-~~---~~~~~~ 84 (374)
+|+|+|.++++.++++ ++++.+|||+|||+++++++.. ...++||++|+++|+.||.+++.++ +. .+..+.
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~ 87 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALT 87 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEEC
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEee
Confidence 6999999999999999 9999999999999998877665 4889999999999999999999987 44 566666
Q ss_pred CCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCe
Q 037567 85 SAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPF 164 (374)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (374)
+......... ....++|+|+||+.+...... ......++++||+||||++.+.... . .....+....+..++
T Consensus 88 g~~~~~~~~~--~~~~~~ivv~T~~~l~~~~~~--~~~~~~~~~~vIiDEaH~~~~~~~~-~---~~~~~~~~~~~~~~~ 159 (494)
T 1wp9_A 88 GEKSPEERSK--AWARAKVIVATPQTIENDLLA--GRISLEDVSLIVFDEAHRAVGNYAY-V---FIAREYKRQAKNPLV 159 (494)
T ss_dssp SCSCHHHHHH--HHHHCSEEEECHHHHHHHHHT--TSCCTTSCSEEEEETGGGCSTTCHH-H---HHHHHHHHHCSSCCE
T ss_pred CCcchhhhhh--hccCCCEEEecHHHHHHHHhc--CCcchhhceEEEEECCcccCCCCcH-H---HHHHHHHhcCCCCeE
Confidence 5544332211 123469999999988654332 2234567899999999998753211 1 222333344557889
Q ss_pred eEEEeecCcc--cHHHHHHhcCCCCCeEEEeccC-------CCceeEEEEeec---------------------------
Q 037567 165 VALTATATEK--VRIDIINSLKLKNPYVTIASFD-------RKNLFYGVKVIN--------------------------- 208 (374)
Q Consensus 165 i~~SaT~~~~--~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~--------------------------- 208 (374)
++|||||... ....+...++............ ............
T Consensus 160 l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (494)
T 1wp9_A 160 IGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLL 239 (494)
T ss_dssp EEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred EEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999843 2223444443221111000000 000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 037567 209 -------------------------------------------------------------------------------- 208 (374)
Q Consensus 209 -------------------------------------------------------------------------------- 208 (374)
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 319 (494)
T 1wp9_A 240 ESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEI 319 (494)
T ss_dssp SCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhh
Confidence
Q ss_pred -------------------CCcchHHHHHHHHHHhh---cCCCcEEEEecchhHHHHHHHHHHHcCCceeeeec------
Q 037567 209 -------------------RGQSFVDELVQEILKSV---AGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHG------ 260 (374)
Q Consensus 209 -------------------~~~~~~~~~~~~~~~~~---~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~------ 260 (374)
.........+.+++... ..+.++||||+++..++.+++.|++.++.+..+||
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~ 399 (494)
T 1wp9_A 320 FSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKEN 399 (494)
T ss_dssp HTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC--
T ss_pred hhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccc
Confidence 00111112223333332 46889999999999999999999999999999999
Q ss_pred --CCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCCChhHHHHhhccCCCCCCceEEEEEeeccCC
Q 037567 261 --QMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNF 337 (374)
Q Consensus 261 --~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 337 (374)
+++..+|+.+++.|++|+.+|||+|+++++|+|+|++++||++++|+|+..|.||+||+||.|+ |.++.++.+.+.
T Consensus 400 ~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ 477 (494)
T 1wp9_A 400 DRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTR 477 (494)
T ss_dssp -----CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSH
T ss_pred cccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 999999988654
No 23
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=6.3e-44 Score=338.15 Aligned_cols=321 Identities=16% Similarity=0.173 Sum_probs=178.7
Q ss_pred CCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcccccc--------CCcEEEEcchHHHHHHHHHHHHHc----C
Q 037567 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVT--------GKTALVVSPLISLMQDQVMSLKQR----G 77 (374)
Q Consensus 10 ~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~--------~~~~lil~P~~~l~~q~~~~~~~~----~ 77 (374)
+.-+|+|+|.++++.+++++++++.+|||+|||++|+++++.. +.++||++|+++|+.||.+.+.++ +
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 83 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 83 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 3447999999999999999999999999999999998887652 788999999999999999999876 7
Q ss_pred CceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHH-HhcCccEEEEeccchhhcccCcchHHH-HHHHHH
Q 037567 78 INAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKL-LKAGVCLFAVDEAHCISEWGHDFRLEY-KQLDKL 155 (374)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~-~~~~~~~vviDE~h~~~~~~~~~~~~~-~~~~~~ 155 (374)
..+..+.++........ .....++|+|+||+++...+.. ... .+.++++||+||||++.+++. ..... ..+...
T Consensus 84 ~~~~~~~g~~~~~~~~~-~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~~~~~~ 159 (556)
T 4a2p_A 84 YSVQGISGENFSNVSVE-KVIEDSDIIVVTPQILVNSFED--GTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYLEQK 159 (556)
T ss_dssp CCEEECCCC-----CHH-HHHHHCSEEEECHHHHHHHHHS--SSCCCSTTCSEEEEETGGGCSTTSH-HHHHHHHHHHHH
T ss_pred ceEEEEeCCCCcchhHH-HhhCCCCEEEECHHHHHHHHHh--CcccccccCCEEEEECCcccCCcch-HHHHHHHHHHhh
Confidence 77777776654333222 2223479999999998654432 122 456789999999999987653 11111 111111
Q ss_pred HH-hcCCCCeeEEEeecCcccHH----------HHHHhcCCCCCeEEEecc---------CCCceeEEEEe---------
Q 037567 156 RT-FLLGVPFVALTATATEKVRI----------DIINSLKLKNPYVTIASF---------DRKNLFYGVKV--------- 206 (374)
Q Consensus 156 ~~-~~~~~~~i~~SaT~~~~~~~----------~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~--------- 206 (374)
.. ..+..++++||||+...... .+...+... .+..... ..+........
T Consensus 160 ~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (556)
T 4a2p_A 160 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ--AISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 237 (556)
T ss_dssp HCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCS--EEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHH
T ss_pred hcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCe--EecchhcchHHHHhcCCCCceEEEEcCCCcCChHHH
Confidence 10 12457899999999653211 111222211 0000000 00000000000
Q ss_pred -----------------------------ec-------------------------------------------------
Q 037567 207 -----------------------------IN------------------------------------------------- 208 (374)
Q Consensus 207 -----------------------------~~------------------------------------------------- 208 (374)
..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 317 (556)
T 4a2p_A 238 IISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 317 (556)
T ss_dssp HHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00
Q ss_pred --------------------------------------------------CCcchHHHHHHHHHH-hh--cCCCcEEEEe
Q 037567 209 --------------------------------------------------RGQSFVDELVQEILK-SV--AGAGSIIVYC 235 (374)
Q Consensus 209 --------------------------------------------------~~~~~~~~~~~~~~~-~~--~~~~~~lVf~ 235 (374)
.........+.+++. .. ..+.++||||
T Consensus 318 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~ 397 (556)
T 4a2p_A 318 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFA 397 (556)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEE
Confidence 000011111222222 21 4678999999
Q ss_pred cchhHHHHHHHHHHHc------------CCceeeeecCCChHHHHHHHHhhhc-CCeeEEEEeccccccccccCccEEEE
Q 037567 236 MTIKDVEEISKALKQL------------GVKAGTYHGQMGSKAREEAHRLFIR-DEIRVMVATMAFGMGIDKPDVRHVIH 302 (374)
Q Consensus 236 ~~~~~~~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~ilv~t~~~~~G~d~~~~~~vi~ 302 (374)
+++..++.+++.|.+. |.....+||+++..+|..+++.|++ |+.+|||||+++++|+|+|++++||+
T Consensus 398 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~ 477 (556)
T 4a2p_A 398 KTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL 477 (556)
T ss_dssp SSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEE
T ss_pred ccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEE
Confidence 9999999999999875 4445566788999999999999999 99999999999999999999999999
Q ss_pred ECCCCChhHHHHhhccCCCCCCceEEEEEeeccCCC
Q 037567 303 YGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338 (374)
Q Consensus 303 ~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 338 (374)
+++|+|+..|+||+|| ||. .+|.+++++.+.+..
T Consensus 478 ~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 478 YEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp ETCCSCHHHHHHC----------CCEEEEESCHHHH
T ss_pred eCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 9999999999999999 998 789999998887653
No 24
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=3.8e-44 Score=347.90 Aligned_cols=330 Identities=16% Similarity=0.139 Sum_probs=196.0
Q ss_pred hHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcccccc--------CCcEEEEcchHHHHHHHHHHHH
Q 037567 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVT--------GKTALVVSPLISLMQDQVMSLK 74 (374)
Q Consensus 3 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~--------~~~~lil~P~~~l~~q~~~~~~ 74 (374)
+++.. +||.+|+|+|.++++.+++++++++.+|||+|||++|+++++.. ..+++|++|+++|+.||.+.++
T Consensus 4 ~~l~~-~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 4 SDTNL-YSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ---CT-TC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred Ccccc-cCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 44555 89999999999999999999999999999999999998887641 2789999999999999999998
Q ss_pred Hc----CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHH-HhcCccEEEEeccchhhcccCcchHHH
Q 037567 75 QR----GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKL-LKAGVCLFAVDEAHCISEWGHDFRLEY 149 (374)
Q Consensus 75 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~-~~~~~~~vviDE~h~~~~~~~~~~~~~ 149 (374)
++ ++.+..+.++.......... ...++|+|+||++|...+.. ... .+.++++||+||||++.+... +....
T Consensus 83 ~~~~~~~~~v~~~~g~~~~~~~~~~~-~~~~~Iiv~Tp~~L~~~l~~--~~~~~l~~~~~vViDEaH~~~~~~~-~~~i~ 158 (696)
T 2ykg_A 83 KYFERHGYRVTGISGATAENVPVEQI-VENNDIIILTPQILVNNLKK--GTIPSLSIFTLMIFDECHNTSKQHP-YNMIM 158 (696)
T ss_dssp HHTTTTTCCEEEECSSSCSSSCHHHH-HHTCSEEEECHHHHHHHHHT--TSSCCGGGCSEEEEETGGGCSTTCH-HHHHH
T ss_pred HHhccCCceEEEEeCCccccccHHHh-ccCCCEEEECHHHHHHHHhc--CcccccccccEEEEeCCCcccCccc-HHHHH
Confidence 87 66776666655433322222 23479999999998665433 112 356789999999999875432 11111
Q ss_pred H-HHHHHHH--hcCCCCeeEEEeecCc-------ccHHHHHHhcCCC--------------------CCeEEEec-cCCC
Q 037567 150 K-QLDKLRT--FLLGVPFVALTATATE-------KVRIDIINSLKLK--------------------NPYVTIAS-FDRK 198 (374)
Q Consensus 150 ~-~~~~~~~--~~~~~~~i~~SaT~~~-------~~~~~~~~~~~~~--------------------~~~~~~~~-~~~~ 198 (374)
. .+..... ..+..++++||||+.. .....+....... .+...... ....
T Consensus 159 ~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~ 238 (696)
T 2ykg_A 159 FNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRI 238 (696)
T ss_dssp HHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCS
T ss_pred HHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCccc
Confidence 1 1111111 0145789999999972 1122222211100 01000000 0000
Q ss_pred ceeEE----------------------------------------------------EE---------------------
Q 037567 199 NLFYG----------------------------------------------------VK--------------------- 205 (374)
Q Consensus 199 ~~~~~----------------------------------------------------~~--------------------- 205 (374)
..... ..
T Consensus 239 ~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 318 (696)
T 2ykg_A 239 SDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRK 318 (696)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHH
Confidence 00000 00
Q ss_pred --------------------------------------ee----------------cCCcchHHHHHHHHHHhh---cCC
Q 037567 206 --------------------------------------VI----------------NRGQSFVDELVQEILKSV---AGA 228 (374)
Q Consensus 206 --------------------------------------~~----------------~~~~~~~~~~~~~~~~~~---~~~ 228 (374)
.. ..........+.+++... .++
T Consensus 319 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~ 398 (696)
T 2ykg_A 319 YNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPE 398 (696)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTT
T ss_pred HhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCC
Confidence 00 000111223333344332 256
Q ss_pred CcEEEEecchhHHHHHHHHHHHcC----Cceeee--------ecCCChHHHHHHHHhhhc-CCeeEEEEecccccccccc
Q 037567 229 GSIIVYCMTIKDVEEISKALKQLG----VKAGTY--------HGQMGSKAREEAHRLFIR-DEIRVMVATMAFGMGIDKP 295 (374)
Q Consensus 229 ~~~lVf~~~~~~~~~l~~~l~~~~----~~~~~~--------~~~~~~~~r~~~~~~f~~-g~~~ilv~t~~~~~G~d~~ 295 (374)
+++||||+++..++.+++.|++.+ +.+..+ ||+++.++|.++++.|++ |+.+|||||+++++|+|+|
T Consensus 399 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip 478 (696)
T 2ykg_A 399 TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIA 478 (696)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---C
T ss_pred CcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCc
Confidence 899999999999999999999987 788888 559999999999999998 9999999999999999999
Q ss_pred CccEEEEECCCCChhHHHHhhccCCCCCCceEEEEEeeccCCCc
Q 037567 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAK 339 (374)
Q Consensus 296 ~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~ 339 (374)
++++||++++|+|+..|+||+|| ||. ++|.++.+++..+...
T Consensus 479 ~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~ 520 (696)
T 2ykg_A 479 QCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIE 520 (696)
T ss_dssp CCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHH
T ss_pred cCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHH
Confidence 99999999999999999999999 997 7889999998876643
No 25
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=3.5e-43 Score=340.89 Aligned_cols=315 Identities=21% Similarity=0.293 Sum_probs=233.5
Q ss_pred hHHHhHcCCCCCchhHHHHHHH-HHcCCCEEEEccCCCCchhhhhccccc----cCCcEEEEcchHHHHHHHHHHHHH--
Q 037567 3 STLKKYFGYSVFRPYQKDVIQR-IIEKRDCLVVMATGSGKSLCYQLPPLV----TGKTALVVSPLISLMQDQVMSLKQ-- 75 (374)
Q Consensus 3 ~~l~~~~~~~~~~~~Q~~~~~~-~~~~~~~l~~a~tGsGKT~~~~l~~~~----~~~~~lil~P~~~l~~q~~~~~~~-- 75 (374)
+.+++ +||.+|+|+|.++++. +.+++++++++|||||||+++.++++. .+.+++|++|+++|+.|+.+.++.
T Consensus 14 ~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l~ 92 (720)
T 2zj8_A 14 STLKE-RGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWE 92 (720)
T ss_dssp HHHHH-TTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGGG
T ss_pred HHHHH-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHHH
Confidence 45555 7999999999999998 788999999999999999998777763 478999999999999999999864
Q ss_pred -cCCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHH
Q 037567 76 -RGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDK 154 (374)
Q Consensus 76 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~ 154 (374)
+|..+...+++...... ..+.++|+|+||+++..+... ....+.++++||+||+|.+.+++.. ..+..
T Consensus 93 ~~g~~v~~~~G~~~~~~~----~~~~~~Iiv~Tpe~l~~~~~~--~~~~l~~~~~vIiDE~H~l~~~~r~-----~~~~~ 161 (720)
T 2zj8_A 93 KIGLRVAMATGDYDSKDE----WLGKYDIIIATAEKFDSLLRH--GSSWIKDVKILVADEIHLIGSRDRG-----ATLEV 161 (720)
T ss_dssp GGTCCEEEECSCSSCCCG----GGGGCSEEEECHHHHHHHHHH--TCTTGGGEEEEEEETGGGGGCTTTH-----HHHHH
T ss_pred hcCCEEEEecCCCCcccc----ccCCCCEEEECHHHHHHHHHc--ChhhhhcCCEEEEECCcccCCCccc-----HHHHH
Confidence 46777777765443322 123579999999998765443 2233578899999999998764432 22222
Q ss_pred HHHhcC-CCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEE------EeecCC---cchHHHHHHHHHHh
Q 037567 155 LRTFLL-GVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGV------KVINRG---QSFVDELVQEILKS 224 (374)
Q Consensus 155 ~~~~~~-~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~---~~~~~~~~~~~~~~ 224 (374)
+...++ +.++++||||+++. ..+..+++.. ..........+.... ...... .......+.+.
T Consensus 162 ll~~l~~~~~ii~lSATl~n~--~~~~~~l~~~---~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 233 (720)
T 2zj8_A 162 ILAHMLGKAQIIGLSATIGNP--EELAEWLNAE---LIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDA--- 233 (720)
T ss_dssp HHHHHBTTBEEEEEECCCSCH--HHHHHHTTEE---EEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHH---
T ss_pred HHHHhhcCCeEEEEcCCcCCH--HHHHHHhCCc---ccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHH---
Confidence 333222 68899999999864 3566766532 111111111111000 010100 11222333333
Q ss_pred hcCCCcEEEEecchhHHHHHHHHHHHcC---------------------------------CceeeeecCCChHHHHHHH
Q 037567 225 VAGAGSIIVYCMTIKDVEEISKALKQLG---------------------------------VKAGTYHGQMGSKAREEAH 271 (374)
Q Consensus 225 ~~~~~~~lVf~~~~~~~~~l~~~l~~~~---------------------------------~~~~~~~~~~~~~~r~~~~ 271 (374)
..+++++||||++++.++.+++.|.+.. ..+..+||+++.++|..++
T Consensus 234 ~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~ 313 (720)
T 2zj8_A 234 IRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVE 313 (720)
T ss_dssp HHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred HhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 3467999999999999999999987531 2488999999999999999
Q ss_pred HhhhcCCeeEEEEeccccccccccCccEEEE----EC----CCCChhHHHHhhccCCCCC--CceEEEEEeeccCC
Q 037567 272 RLFIRDEIRVMVATMAFGMGIDKPDVRHVIH----YG----CPKTLESYYQESGRCGRDG--IASVCWLYYARSNF 337 (374)
Q Consensus 272 ~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~----~~----~p~s~~~~~Q~~GR~~R~~--~~g~~~~~~~~~~~ 337 (374)
+.|.+|.++|||||+++++|+|+|++++||+ |+ .|.|..+|.||+|||||.| ..|.|+++++..+.
T Consensus 314 ~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 389 (720)
T 2zj8_A 314 ENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDP 389 (720)
T ss_dssp HHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCH
T ss_pred HHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccH
Confidence 9999999999999999999999999999998 54 5889999999999999988 47899999988763
No 26
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-43 Score=349.56 Aligned_cols=310 Identities=19% Similarity=0.227 Sum_probs=224.1
Q ss_pred HhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc---cCCcEEEEcchHHHHHHHHHHHHHcCCceEE
Q 037567 6 KKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV---TGKTALVVSPLISLMQDQVMSLKQRGINAEF 82 (374)
Q Consensus 6 ~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~---~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 82 (374)
...++| +|+|+|.++++.+.++++++++||||||||++|.++++. .+.+++|++|+++|+.|+++.+......+.+
T Consensus 178 ~~~~~f-~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~Vgl 256 (1108)
T 3l9o_A 178 ARTYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGL 256 (1108)
T ss_dssp SSCCSS-CCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEE
T ss_pred HHhCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccE
Confidence 344455 599999999999999999999999999999999888765 4889999999999999999999987667777
Q ss_pred cCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhc-CC
Q 037567 83 LGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFL-LG 161 (374)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~-~~ 161 (374)
..++... ...++|+|+||+.|..++.. ....+.++++|||||+|++.++++. ..+..+...+ ++
T Consensus 257 ltGd~~~--------~~~~~IlV~Tpe~L~~~L~~--~~~~l~~l~lVVIDEaH~l~d~~rg-----~~~e~ii~~l~~~ 321 (1108)
T 3l9o_A 257 MTGDITI--------NPDAGCLVMTTEILRSMLYR--GSEVMREVAWVIFDEVHYMRDKERG-----VVWEETIILLPDK 321 (1108)
T ss_dssp ECSSCBC--------CCSCSEEEEEHHHHHHHHHH--CSSHHHHEEEEEEETGGGTTSHHHH-----HHHHHHHHHSCTT
T ss_pred EeCcccc--------CCCCCEEEeChHHHHHHHHc--CccccccCCEEEEhhhhhccccchH-----HHHHHHHHhcCCC
Confidence 6665432 23479999999988776544 2334567899999999999875533 2233333333 46
Q ss_pred CCeeEEEeecCcccHHHHHHhcC---CCCCeEEEeccCCCceeEEEEe---------ecCC-------------------
Q 037567 162 VPFVALTATATEKVRIDIINSLK---LKNPYVTIASFDRKNLFYGVKV---------INRG------------------- 210 (374)
Q Consensus 162 ~~~i~~SaT~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---------~~~~------------------- 210 (374)
.++++||||+++... +..+++ ..+..+.........+...+.. ....
T Consensus 322 ~qvl~lSATipn~~e--~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~ 399 (1108)
T 3l9o_A 322 VRYVFLSATIPNAME--FAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQI 399 (1108)
T ss_dssp SEEEEEECSCSSCHH--HHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC----
T ss_pred ceEEEEcCCCCCHHH--HHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhh
Confidence 889999999877532 233322 2222222222221111111100 0000
Q ss_pred --------------------------cchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCc----------
Q 037567 211 --------------------------QSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVK---------- 254 (374)
Q Consensus 211 --------------------------~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~---------- 254 (374)
......++..+.. ...+++||||+++..++.++..|...++.
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~--~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~ 477 (1108)
T 3l9o_A 400 GDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK--KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTK 477 (1108)
T ss_dssp -------------------------CHHHHHHHHHHHHH--TTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHH
T ss_pred cccccccccccccccccccccccccchhHHHHHHHHHHh--cCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 1111222222222 24679999999999999999887643222
Q ss_pred -----------------------------eeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECC
Q 037567 255 -----------------------------AGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGC 305 (374)
Q Consensus 255 -----------------------------~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~ 305 (374)
+..+||++++.+|..+++.|.+|.++|||||+++++|+|+|++++||+++.
T Consensus 478 ~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~ 557 (1108)
T 3l9o_A 478 IFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVR 557 (1108)
T ss_dssp HGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSE
T ss_pred HHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCc
Confidence 688999999999999999999999999999999999999999999996554
Q ss_pred --------CCChhHHHHhhccCCCCC--CceEEEEEeecc
Q 037567 306 --------PKTLESYYQESGRCGRDG--IASVCWLYYARS 335 (374)
Q Consensus 306 --------p~s~~~~~Q~~GR~~R~~--~~g~~~~~~~~~ 335 (374)
|.|+.+|+||+||+||.| ..|.|++++.+.
T Consensus 558 ~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 558 KWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp EESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred ccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 337788999999999999 689999988775
No 27
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=2.9e-43 Score=333.58 Aligned_cols=317 Identities=16% Similarity=0.140 Sum_probs=203.2
Q ss_pred CCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcccccc--------CCcEEEEcchHHHHHHHHHHHHHc----CCce
Q 037567 13 VFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVT--------GKTALVVSPLISLMQDQVMSLKQR----GINA 80 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~--------~~~~lil~P~~~l~~q~~~~~~~~----~~~~ 80 (374)
+|+|+|.++++.+++++++++.+|||+|||++|+++++.. +.++||++|+++|+.||.+.+.++ +..+
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 5999999999999999999999999999999998887652 788999999999999999999876 7777
Q ss_pred EEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHH-HhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhc
Q 037567 81 EFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFL 159 (374)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~-~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~ 159 (374)
..+.++........ .....++|+|+||+++...+.. ... .+.++++||+||||++.+.+. +. ..+.......
T Consensus 84 ~~~~g~~~~~~~~~-~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~~vViDEah~~~~~~~-~~---~~~~~~~~~~ 156 (555)
T 3tbk_A 84 ASISGATSDSVSVQ-HIIEDNDIIILTPQILVNNLNN--GAIPSLSVFTLMIFDECHNTSKNHP-YN---QIMFRYLDHK 156 (555)
T ss_dssp EEECTTTGGGSCHH-HHHHHCSEEEECHHHHHHHHHT--SSSCCGGGCSEEEETTGGGCSTTCH-HH---HHHHHHHHHH
T ss_pred EEEcCCCcchhhHH-HHhcCCCEEEECHHHHHHHHhc--CcccccccCCEEEEECccccCCcch-HH---HHHHHHHHhh
Confidence 77776654433222 2223479999999998665433 112 456789999999999976542 11 1112222221
Q ss_pred ------CCCCeeEEEeecCcccH-------H---HHHHhcCCCCCeEEEecc---------CCCceeEEEEee-c-----
Q 037567 160 ------LGVPFVALTATATEKVR-------I---DIINSLKLKNPYVTIASF---------DRKNLFYGVKVI-N----- 208 (374)
Q Consensus 160 ------~~~~~i~~SaT~~~~~~-------~---~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~----- 208 (374)
+..++++||||+..... . .+...+.. ..+..... ..+......... .
T Consensus 157 ~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
T 3tbk_A 157 LGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDA--SVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFK 234 (555)
T ss_dssp TSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTC--SEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHH
T ss_pred hccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCC--eeeeccccCHHHHHhhcCCCceEEEEecCcccChHH
Confidence 34679999999976421 1 11222221 11111000 000000000000 0
Q ss_pred --------------------------------------------------------------------------------
Q 037567 209 -------------------------------------------------------------------------------- 208 (374)
Q Consensus 209 -------------------------------------------------------------------------------- 208 (374)
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 314 (555)
T 3tbk_A 235 CIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDAL 314 (555)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ----------------------------------------------------CCcchHHHHHHHHHHhh---cCCCcEEE
Q 037567 209 ----------------------------------------------------RGQSFVDELVQEILKSV---AGAGSIIV 233 (374)
Q Consensus 209 ----------------------------------------------------~~~~~~~~~~~~~~~~~---~~~~~~lV 233 (374)
.........+.+++... ..+.++||
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lV 394 (555)
T 3tbk_A 315 IISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTIL 394 (555)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEE
Confidence 00011111222222221 35689999
Q ss_pred EecchhHHHHHHHHHHHcC------------CceeeeecCCChHHHHHHHHhhhc-CCeeEEEEeccccccccccCccEE
Q 037567 234 YCMTIKDVEEISKALKQLG------------VKAGTYHGQMGSKAREEAHRLFIR-DEIRVMVATMAFGMGIDKPDVRHV 300 (374)
Q Consensus 234 f~~~~~~~~~l~~~l~~~~------------~~~~~~~~~~~~~~r~~~~~~f~~-g~~~ilv~t~~~~~G~d~~~~~~v 300 (374)
||+++..++.+++.|.+.+ .....+||+++.++|..+++.|++ |+.+|||||+++++|+|+|++++|
T Consensus 395 F~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~V 474 (555)
T 3tbk_A 395 FVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLV 474 (555)
T ss_dssp ECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEE
T ss_pred EeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEE
Confidence 9999999999999999864 234455679999999999999999 999999999999999999999999
Q ss_pred EEECCCCChhHHHHhhccCCCCCCceEEEEEeeccCCCcc
Q 037567 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKG 340 (374)
Q Consensus 301 i~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~ 340 (374)
|++++|+|+..|+||+|| ||. .+|.+++++.+.+....
T Consensus 475 I~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~ 512 (555)
T 3tbk_A 475 ILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEK 512 (555)
T ss_dssp EEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHH
T ss_pred EEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHH
Confidence 999999999999999999 998 88999999988765433
No 28
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-42 Score=342.43 Aligned_cols=310 Identities=19% Similarity=0.249 Sum_probs=228.0
Q ss_pred HhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc---cCCcEEEEcchHHHHHHHHHHHHHcCCceEE
Q 037567 6 KKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV---TGKTALVVSPLISLMQDQVMSLKQRGINAEF 82 (374)
Q Consensus 6 ~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~---~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 82 (374)
...++|. |+|+|.++++.+.+++++++.+|||||||++|.++++. .+.+++|++|+++|++|+++++......+..
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vgl 158 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGL 158 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEE
T ss_pred HHhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEE
Confidence 3457886 99999999999999999999999999999998776654 5789999999999999999999876556666
Q ss_pred cCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhc-CC
Q 037567 83 LGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFL-LG 161 (374)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~-~~ 161 (374)
++++.... ...+|+|+||+.+..++.. ....+.++++||+||+|.+.+++.. ..+..+...+ ++
T Consensus 159 ltGd~~~~--------~~~~IvV~Tpe~L~~~L~~--~~~~l~~l~lVViDEaH~l~d~~rg-----~~~e~il~~l~~~ 223 (1010)
T 2xgj_A 159 MTGDITIN--------PDAGCLVMTTEILRSMLYR--GSEVMREVAWVIFDEVHYMRDKERG-----VVWEETIILLPDK 223 (1010)
T ss_dssp ECSSCEEC--------TTCSEEEEEHHHHHHHHHH--TCTTGGGEEEEEEETGGGGGCTTTH-----HHHHHHHHHSCTT
T ss_pred EeCCCccC--------CCCCEEEEcHHHHHHHHHc--CcchhhcCCEEEEechhhhcccchh-----HHHHHHHHhcCCC
Confidence 66544322 2468999999988655433 2345678899999999999876543 2233333333 46
Q ss_pred CCeeEEEeecCcccHHHHHHhcC---CCCCeEEEeccCCCceeEEEEe---------ecCC-------------------
Q 037567 162 VPFVALTATATEKVRIDIINSLK---LKNPYVTIASFDRKNLFYGVKV---------INRG------------------- 210 (374)
Q Consensus 162 ~~~i~~SaT~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---------~~~~------------------- 210 (374)
.++++||||+++.. .+..+++ ..+..+.........+...+.. ....
T Consensus 224 ~~il~LSATi~n~~--e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 301 (1010)
T 2xgj_A 224 VRYVFLSATIPNAM--EFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQI 301 (1010)
T ss_dssp CEEEEEECCCTTHH--HHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC---
T ss_pred CeEEEEcCCCCCHH--HHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhh
Confidence 88999999988753 2344332 1122222222111111111100 0000
Q ss_pred --------------------------cchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCc----------
Q 037567 211 --------------------------QSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVK---------- 254 (374)
Q Consensus 211 --------------------------~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~---------- 254 (374)
......++..+.. ....++||||+++..++.+++.|...++.
T Consensus 302 ~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~--~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~ 379 (1010)
T 2xgj_A 302 GDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK--KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTK 379 (1010)
T ss_dssp ---------------------------CHHHHHHHHHHH--HTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHH
T ss_pred cccccccccccccccccccccccccchHHHHHHHHHHHh--cCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHH
Confidence 1111223333222 24568999999999999999988764332
Q ss_pred -----------------------------eeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEE---
Q 037567 255 -----------------------------AGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIH--- 302 (374)
Q Consensus 255 -----------------------------~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~--- 302 (374)
+..+||++++.+|..+++.|++|.++|||||+++++|+|+|++++||+
T Consensus 380 ~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~ 459 (1010)
T 2xgj_A 380 IFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVR 459 (1010)
T ss_dssp HHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSE
T ss_pred HHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCc
Confidence 678999999999999999999999999999999999999999999998
Q ss_pred -ECC----CCChhHHHHhhccCCCCCC--ceEEEEEeecc
Q 037567 303 -YGC----PKTLESYYQESGRCGRDGI--ASVCWLYYARS 335 (374)
Q Consensus 303 -~~~----p~s~~~~~Q~~GR~~R~~~--~g~~~~~~~~~ 335 (374)
|+. |.|+.+|.||+||+||.|. .|.|++++.+.
T Consensus 460 kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 460 KWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp EECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred ccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 888 8899999999999999997 59999998765
No 29
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=4.9e-42 Score=341.55 Aligned_cols=280 Identities=21% Similarity=0.268 Sum_probs=206.0
Q ss_pred hHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc---cCCcEEEEcchHHHHHHHHHHHHHc---
Q 037567 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV---TGKTALVVSPLISLMQDQVMSLKQR--- 76 (374)
Q Consensus 3 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~---~~~~~lil~P~~~l~~q~~~~~~~~--- 76 (374)
+.++..+|| +|+|+|.++++.++++++++++||||||||++++++++. .+.++||++|+++|+.|+.+.++.+
T Consensus 69 ~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~ 147 (1104)
T 4ddu_A 69 SFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADE 147 (1104)
T ss_dssp HHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCT
T ss_pred HHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCC
Confidence 346667899 599999999999999999999999999999987777554 6889999999999999999999984
Q ss_pred CCceEEcCCCCCc---hhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhc-----------cc
Q 037567 77 GINAEFLGSAQTD---SSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISE-----------WG 142 (374)
Q Consensus 77 ~~~~~~~~~~~~~---~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~-----------~~ 142 (374)
++.+..+.++... .........+.++|+|+||+++.+++. .....++++||+||+|++.. +|
T Consensus 148 ~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~----~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~g 223 (1104)
T 4ddu_A 148 KVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNRE----KLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVG 223 (1104)
T ss_dssp TSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHH----HHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSS
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHH----hhcccCcCEEEEeCCCccccccccchhhhHhcC
Confidence 4567777776655 333344445568999999999976644 35667899999999998765 33
Q ss_pred CcchHHHHHHHHHHHhc------------CCCCeeEEEeecCcc-cHHHHHHh-cCCCCCeEEEeccCCCceeEEEEeec
Q 037567 143 HDFRLEYKQLDKLRTFL------------LGVPFVALTATATEK-VRIDIINS-LKLKNPYVTIASFDRKNLFYGVKVIN 208 (374)
Q Consensus 143 ~~~~~~~~~~~~~~~~~------------~~~~~i~~SaT~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (374)
+. .. .+..+...+ .+.++++||||+.+. ....+... +.+.. ........++.......
T Consensus 224 f~--~~--~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v---~~~~~~~~~i~~~~~~~- 295 (1104)
T 4ddu_A 224 IP--EE--IIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTV---GRLVSVARNITHVRISS- 295 (1104)
T ss_dssp CC--HH--HHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCC---CBCCCCCCCEEEEEESC-
T ss_pred CC--HH--HHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEe---ccCCCCcCCceeEEEec-
Confidence 32 11 123333322 467899999995443 32222222 22111 11112222332222221
Q ss_pred CCcchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCcee-eeecCCChHHHHHHHHhhhcCCeeEEEE---
Q 037567 209 RGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAG-TYHGQMGSKAREEAHRLFIRDEIRVMVA--- 284 (374)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~r~~~~~~f~~g~~~ilv~--- 284 (374)
. ....+.+++.. .++++||||++++.++.+++.|+..|+.+. .+||. |.+ ++.|++|+.+||||
T Consensus 296 ~----k~~~L~~ll~~--~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas 363 (1104)
T 4ddu_A 296 R----SKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQA 363 (1104)
T ss_dssp C----CHHHHHHHHHH--HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETT
T ss_pred C----HHHHHHHHHHh--cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecC
Confidence 1 22333444444 358999999999999999999999999998 99982 555 99999999999999
Q ss_pred -eccccccccccC-ccEEEEECCCC
Q 037567 285 -TMAFGMGIDKPD-VRHVIHYGCPK 307 (374)
Q Consensus 285 -t~~~~~G~d~~~-~~~vi~~~~p~ 307 (374)
|+++++|+|+|+ +++||++++|.
T Consensus 364 ~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 364 YYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp THHHHCCSCCCTTTCCEEEEESCCE
T ss_pred CCCeeEecCcCCCCCCEEEEECCCC
Confidence 999999999999 99999999998
No 30
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=7.6e-43 Score=341.69 Aligned_cols=324 Identities=17% Similarity=0.173 Sum_probs=185.2
Q ss_pred HcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcccccc--------CCcEEEEcchHHHHHHHHHHHHHc---
Q 037567 8 YFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVT--------GKTALVVSPLISLMQDQVMSLKQR--- 76 (374)
Q Consensus 8 ~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~--------~~~~lil~P~~~l~~q~~~~~~~~--- 76 (374)
.+|+..|+|+|.++++.+++++++++.+|||+|||++|+++++.. +.++||++|+++|+.||.+.++++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 567889999999999999999999999999999999998887652 788999999999999999999876
Q ss_pred -CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHH-HhcCccEEEEeccchhhcccCcchHHHHHHHH
Q 037567 77 -GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDK 154 (374)
Q Consensus 77 -~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~-~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~ 154 (374)
++.+..+.++........ .....++|+|+||+++...+.. ... .+.++++||+||||++...+. +.........
T Consensus 323 ~~~~v~~~~g~~~~~~~~~-~~~~~~~Ivv~Tp~~l~~~l~~--~~~~~~~~~~~iViDEaH~~~~~~~-~~~i~~~~~~ 398 (797)
T 4a2q_A 323 QGYSVQGISGENFSNVSVE-KVIEDSDIIVVTPQILVNSFED--GTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYLE 398 (797)
T ss_dssp GTCCEEEECCC-----CHH-HHHHTCSEEEECHHHHHHHHHS--SSCCCGGGCSEEEETTGGGCSTTSH-HHHHHHHHHH
T ss_pred CCceEEEEeCCcchhhhHH-HhhCCCCEEEEchHHHHHHHHh--ccccccccCCEEEEECccccCCCcc-HHHHHHHHHH
Confidence 777777777654433222 2234579999999998654432 122 356689999999999876442 2211111111
Q ss_pred H-HH-hcCCCCeeEEEeecCccc----------HHHHHHhcCC-------------------CCCeEEEeccCCCce---
Q 037567 155 L-RT-FLLGVPFVALTATATEKV----------RIDIINSLKL-------------------KNPYVTIASFDRKNL--- 200 (374)
Q Consensus 155 ~-~~-~~~~~~~i~~SaT~~~~~----------~~~~~~~~~~-------------------~~~~~~~~~~~~~~~--- 200 (374)
. .. ..+..++++||||+.... ...+...++. ...............
T Consensus 399 ~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 478 (797)
T 4a2q_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (797)
T ss_dssp HHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHH
T ss_pred HhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHH
Confidence 1 11 134577999999996421 1111222211 111110000000000
Q ss_pred ---------------eE------EEEe--e---------------------c----------------------------
Q 037567 201 ---------------FY------GVKV--I---------------------N---------------------------- 208 (374)
Q Consensus 201 ---------------~~------~~~~--~---------------------~---------------------------- 208 (374)
.. .... . .
T Consensus 479 ~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 558 (797)
T 4a2q_A 479 IISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 558 (797)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 00 0000 0 0
Q ss_pred ---------------------------------------------------CCcchHHHHHHHHHHh---hcCCCcEEEE
Q 037567 209 ---------------------------------------------------RGQSFVDELVQEILKS---VAGAGSIIVY 234 (374)
Q Consensus 209 ---------------------------------------------------~~~~~~~~~~~~~~~~---~~~~~~~lVf 234 (374)
...... ..+..++.. ...+.++|||
T Consensus 559 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~-~~L~~lL~~~~~~~~~~kvLIF 637 (797)
T 4a2q_A 559 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKL-EELVCILDDAYRYNPQTRTLLF 637 (797)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHH-HHHHHHHHHHHHHCSSCCEEEE
T ss_pred hccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHH-HHHHHHHHHHhccCCCCeEEEE
Confidence 000011 112222221 1456899999
Q ss_pred ecchhHHHHHHHHHHHc------------CCceeeeecCCChHHHHHHHHhhhc-CCeeEEEEeccccccccccCccEEE
Q 037567 235 CMTIKDVEEISKALKQL------------GVKAGTYHGQMGSKAREEAHRLFIR-DEIRVMVATMAFGMGIDKPDVRHVI 301 (374)
Q Consensus 235 ~~~~~~~~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~ilv~t~~~~~G~d~~~~~~vi 301 (374)
|+++..++.+++.|++. |.....+||+++..+|..+++.|++ |+.+|||||+++++|+|+|++++||
T Consensus 638 ~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI 717 (797)
T 4a2q_A 638 AKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVV 717 (797)
T ss_dssp ESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEE
T ss_pred ECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEE
Confidence 99999999999999874 4455677889999999999999999 9999999999999999999999999
Q ss_pred EECCCCChhHHHHhhccCCCCCCceEEEEEeeccCCC
Q 037567 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338 (374)
Q Consensus 302 ~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 338 (374)
++++|+|+..|+||+|| ||. ..|.++.++.+.+..
T Consensus 718 ~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 718 LYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp EESCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred EeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 99999999999999999 998 789999998886643
No 31
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=6.4e-43 Score=334.98 Aligned_cols=310 Identities=20% Similarity=0.214 Sum_probs=230.8
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcC------CCEEEEccCCCCchhhhhccccc---cCCcEEEEcchHHHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEK------RDCLVVMATGSGKSLCYQLPPLV---TGKTALVVSPLISLMQDQVMS 72 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~------~~~l~~a~tGsGKT~~~~l~~~~---~~~~~lil~P~~~l~~q~~~~ 72 (374)
.+.+.+.+|| +|+++|.++++.+.++ .++++.||||||||++|+++++. .+.+++|++|+++|+.|+.+.
T Consensus 358 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~ 436 (780)
T 1gm5_A 358 AEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRR 436 (780)
T ss_dssp HHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHH
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHH
Confidence 3556667999 8999999999998874 58999999999999999888765 488999999999999999999
Q ss_pred HHHc----CCceEEcCCCCCchhh---hhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcc
Q 037567 73 LKQR----GINAEFLGSAQTDSSV---QTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDF 145 (374)
Q Consensus 73 ~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~ 145 (374)
+.++ ++++..++++...... ......+.++|+|+||+.+. ....+.+++++|+||+|++.....
T Consensus 437 l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~-------~~~~~~~l~lVVIDEaHr~g~~qr-- 507 (780)
T 1gm5_A 437 TVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQ-------EDVHFKNLGLVIIDEQHRFGVKQR-- 507 (780)
T ss_dssp HHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHH-------HCCCCSCCCEEEEESCCCC-------
T ss_pred HHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-------hhhhccCCceEEecccchhhHHHH--
Confidence 8865 6777777776654432 23344567899999998663 233467889999999998642111
Q ss_pred hHHHHHHHHHHHhcCCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEe-ccCCCceeEEEEeecCCcchHHHHHHHHHHh
Q 037567 146 RLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTIA-SFDRKNLFYGVKVINRGQSFVDELVQEILKS 224 (374)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (374)
..+.....+.++++|||||.+.... ...++..+..+... ......+. ...........++..+.+.
T Consensus 508 -------~~l~~~~~~~~vL~mSATp~p~tl~--~~~~g~~~~s~i~~~p~~r~~i~----~~~~~~~~~~~l~~~i~~~ 574 (780)
T 1gm5_A 508 -------EALMNKGKMVDTLVMSATPIPRSMA--LAFYGDLDVTVIDEMPPGRKEVQ----TMLVPMDRVNEVYEFVRQE 574 (780)
T ss_dssp -------CCCCSSSSCCCEEEEESSCCCHHHH--HHHTCCSSCEEECCCCSSCCCCE----ECCCCSSTHHHHHHHHHHH
T ss_pred -------HHHHHhCCCCCEEEEeCCCCHHHHH--HHHhCCcceeeeeccCCCCcceE----EEEeccchHHHHHHHHHHH
Confidence 1112222467899999999876543 22233222222211 11111111 1111223345555666666
Q ss_pred hcCCCcEEEEecchh--------HHHHHHHHHHH---cCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEecccccccc
Q 037567 225 VAGAGSIIVYCMTIK--------DVEEISKALKQ---LGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGID 293 (374)
Q Consensus 225 ~~~~~~~lVf~~~~~--------~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d 293 (374)
...+++++|||+..+ .++.+++.|++ .+..+..+||+++.++|..+++.|.+|+.+|||||+++++|+|
T Consensus 575 l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GID 654 (780)
T 1gm5_A 575 VMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGID 654 (780)
T ss_dssp TTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSC
T ss_pred HhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCcccc
Confidence 677899999999653 57788888887 4678999999999999999999999999999999999999999
Q ss_pred ccCccEEEEECCCC-ChhHHHHhhccCCCCCCceEEEEEeec
Q 037567 294 KPDVRHVIHYGCPK-TLESYYQESGRCGRDGIASVCWLYYAR 334 (374)
Q Consensus 294 ~~~~~~vi~~~~p~-s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 334 (374)
+|++++||++++|. +...+.||+||+||.|+.|.|++++.+
T Consensus 655 iP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~ 696 (780)
T 1gm5_A 655 VPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGD 696 (780)
T ss_dssp CTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCS
T ss_pred CCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECC
Confidence 99999999999985 788999999999999999999999873
No 32
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.2e-41 Score=349.92 Aligned_cols=334 Identities=18% Similarity=0.209 Sum_probs=247.3
Q ss_pred CCCCCchhHHHHHHHHHc-CCCEEEEccCCCCchhhhhccccc-----cCCcEEEEcchHHHHHHHHHHHHH-c----CC
Q 037567 10 GYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLV-----TGKTALVVSPLISLMQDQVMSLKQ-R----GI 78 (374)
Q Consensus 10 ~~~~~~~~Q~~~~~~~~~-~~~~l~~a~tGsGKT~~~~l~~~~-----~~~~~lil~P~~~l~~q~~~~~~~-~----~~ 78 (374)
+|+.|+|+|.++++.++. +++++++||||||||+++.++++. .+.+++|++|+++|++|.++++.+ + |.
T Consensus 923 ~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~ 1002 (1724)
T 4f92_B 923 KFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNK 1002 (1724)
T ss_dssp TCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCC
T ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCC
Confidence 699999999999999986 567999999999999999888764 367899999999999999988864 3 55
Q ss_pred ceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcc-cCcchHHHHHHHHHHH
Q 037567 79 NAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEW-GHDFRLEYKQLDKLRT 157 (374)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~-~~~~~~~~~~~~~~~~ 157 (374)
++...+++..... .....++|+|+|||++..+.+++.....+.++++||+||+|.+.+. |......+.++..+..
T Consensus 1003 ~V~~ltGd~~~~~----~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~ 1078 (1724)
T 4f92_B 1003 KVVLLTGETSTDL----KLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISS 1078 (1724)
T ss_dssp CEEECCSCHHHHH----HHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCcch----hhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHHHHh
Confidence 6666655432211 1223469999999998777666555556789999999999988652 2222223334443333
Q ss_pred hc-CCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCC--CceeEEEEeecCCcc-----hHHHHHHHHHHhhcCCC
Q 037567 158 FL-LGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDR--KNLFYGVKVINRGQS-----FVDELVQEILKSVAGAG 229 (374)
Q Consensus 158 ~~-~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 229 (374)
.. ++.++|+||||.++.. ++..|++...........+. ..+...+........ .....+...+.....++
T Consensus 1079 ~~~~~~riI~lSATl~N~~--dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 1156 (1724)
T 4f92_B 1079 QIERPIRIVALSSSLSNAK--DVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKK 1156 (1724)
T ss_dssp TTSSCCEEEEEESCBTTHH--HHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSS
T ss_pred hcCCCceEEEEeCCCCCHH--HHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCC
Confidence 32 4688999999998754 67899987765544333222 222333332222211 11233344455556789
Q ss_pred cEEEEecchhHHHHHHHHHHHc----------------------------------CCceeeeecCCChHHHHHHHHhhh
Q 037567 230 SIIVYCMTIKDVEEISKALKQL----------------------------------GVKAGTYHGQMGSKAREEAHRLFI 275 (374)
Q Consensus 230 ~~lVf~~~~~~~~~l~~~l~~~----------------------------------~~~~~~~~~~~~~~~r~~~~~~f~ 275 (374)
++||||+++..++.++..|... ...++.+|++++..+|..+.+.|.
T Consensus 1157 ~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~ 1236 (1724)
T 4f92_B 1157 PVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFS 1236 (1724)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHH
T ss_pred CeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHH
Confidence 9999999999999888766431 234788999999999999999999
Q ss_pred cCCeeEEEEeccccccccccCccEEEE----E------CCCCChhHHHHhhccCCCCCC--ceEEEEEeeccCCCcccce
Q 037567 276 RDEIRVMVATMAFGMGIDKPDVRHVIH----Y------GCPKTLESYYQESGRCGRDGI--ASVCWLYYARSNFAKGDFY 343 (374)
Q Consensus 276 ~g~~~ilv~t~~~~~G~d~~~~~~vi~----~------~~p~s~~~~~Q~~GR~~R~~~--~g~~~~~~~~~~~~~~~~~ 343 (374)
+|.++|||||+.++.|+|+|...+||. + ..|.+..+|.||+|||||.|. .|.+++++...+...++++
T Consensus 1237 ~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1237 SGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp HTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHH
T ss_pred CCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHH
Confidence 999999999999999999999888873 2 235689999999999999986 7999999999888777777
Q ss_pred eccccc
Q 037567 344 CGESQT 349 (374)
Q Consensus 344 ~~~~~~ 349 (374)
+.+..+
T Consensus 1317 l~~~~p 1322 (1724)
T 4f92_B 1317 LYEPLP 1322 (1724)
T ss_dssp TTSCBC
T ss_pred hCCCCc
Confidence 665543
No 33
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.4e-41 Score=349.37 Aligned_cols=336 Identities=21% Similarity=0.233 Sum_probs=243.2
Q ss_pred HhHc-CCCCCchhHHHHHHHHHc-CCCEEEEccCCCCchhhhhccccc--------------cCCcEEEEcchHHHHHHH
Q 037567 6 KKYF-GYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLV--------------TGKTALVVSPLISLMQDQ 69 (374)
Q Consensus 6 ~~~~-~~~~~~~~Q~~~~~~~~~-~~~~l~~a~tGsGKT~~~~l~~~~--------------~~~~~lil~P~~~l~~q~ 69 (374)
+..| ||.+|+++|+++++.+++ ++|++++||||||||+++.++++. .+.++++++|+++|++|.
T Consensus 71 ~~~f~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~ 150 (1724)
T 4f92_B 71 QAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEM 150 (1724)
T ss_dssp STTCTTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHH
T ss_pred HHhcCCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHH
Confidence 3444 799999999999998875 789999999999999999888763 256899999999999999
Q ss_pred HHHHHH----cCCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhc-ccCc
Q 037567 70 VMSLKQ----RGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISE-WGHD 144 (374)
Q Consensus 70 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~-~~~~ 144 (374)
.+++.+ .|+.+...+++...... ....++|+|+|||++..++++......+..+++||+||+|.+.+ .|..
T Consensus 151 ~~~l~~~~~~~gi~V~~~tGd~~~~~~----~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~ 226 (1724)
T 4f92_B 151 VGSFGKRLATYGITVAELTGDHQLCKE----EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPV 226 (1724)
T ss_dssp HHHHHHHHTTTTCCEEECCSSCSSCCT----TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHH
T ss_pred HHHHHHHHhhCCCEEEEEECCCCCCcc----ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccHHH
Confidence 988864 47778777776543322 22457999999999877766544455678899999999998854 2222
Q ss_pred chHHHHHHHHHH-HhcCCCCeeEEEeecCcccHHHHHHhcCCCCCe-E-EEeccCCC-ceeEEEEeecCCc-----chHH
Q 037567 145 FRLEYKQLDKLR-TFLLGVPFVALTATATEKVRIDIINSLKLKNPY-V-TIASFDRK-NLFYGVKVINRGQ-----SFVD 215 (374)
Q Consensus 145 ~~~~~~~~~~~~-~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~-~~~~~~~~~~~~~-----~~~~ 215 (374)
.+..+.++.+.. ...++.++|+||||.++.. ++..|++..... . ...+..++ .+...+....... ....
T Consensus 227 lE~~l~rl~~~~~~~~~~~riI~LSATl~N~~--dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~ 304 (1724)
T 4f92_B 227 LEALVARAIRNIEMTQEDVRLIGLSATLPNYE--DVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMN 304 (1724)
T ss_dssp HHHHHHHHHHHHHHHTCCCEEEEEECSCTTHH--HHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEecccCCHH--HHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHH
Confidence 222223332222 2335789999999998643 678888754321 1 11111111 1111111111111 1122
Q ss_pred HHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHc-------------------------------------CCceeee
Q 037567 216 ELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQL-------------------------------------GVKAGTY 258 (374)
Q Consensus 216 ~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~-------------------------------------~~~~~~~ 258 (374)
+.+.+.+.....++++||||++++.++.+++.|.+. ...++.+
T Consensus 305 ~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~H 384 (1724)
T 4f92_B 305 EIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIH 384 (1724)
T ss_dssp HHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEE
T ss_pred HHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEE
Confidence 334444444456789999999999999888877542 2236789
Q ss_pred ecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEE----EC------CCCChhHHHHhhccCCCCCC--ce
Q 037567 259 HGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIH----YG------CPKTLESYYQESGRCGRDGI--AS 326 (374)
Q Consensus 259 ~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~----~~------~p~s~~~~~Q~~GR~~R~~~--~g 326 (374)
||+++.++|..+.+.|++|.++|||||++++.|+|+|..++||. ++ .|.++.+|.||+|||||.|. .|
T Consensus 385 HagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G 464 (1724)
T 4f92_B 385 HAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKG 464 (1724)
T ss_dssp CSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCE
T ss_pred cCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCcc
Confidence 99999999999999999999999999999999999999998884 33 24589999999999999864 79
Q ss_pred EEEEEeeccCCCcccceeccc
Q 037567 327 VCWLYYARSNFAKGDFYCGES 347 (374)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~ 347 (374)
.++++..+++......++...
T Consensus 465 ~~ii~~~~~~~~~~~~ll~~~ 485 (1724)
T 4f92_B 465 EGILITSHGELQYYLSLLNQQ 485 (1724)
T ss_dssp EEEEEEESTTCCHHHHHTTTC
T ss_pred EEEEEecchhHHHHHHHHcCC
Confidence 999999999887776665543
No 34
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=3.8e-42 Score=321.95 Aligned_cols=310 Identities=13% Similarity=0.089 Sum_probs=217.3
Q ss_pred CCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc----cCCcEEEEcchHHHHHHHHHHHHHcCC----ceEEcC
Q 037567 13 VFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV----TGKTALVVSPLISLMQDQVMSLKQRGI----NAEFLG 84 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~----~~~~~lil~P~~~l~~q~~~~~~~~~~----~~~~~~ 84 (374)
+|+|+|.++++.+++++++++++|||+|||+++++++.. ...++||++|+++|+.||.+++.+++. .+..+.
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~ 192 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECG
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEe
Confidence 799999999999999999999999999999998777664 345999999999999999999998733 344444
Q ss_pred CCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhc-CCCC
Q 037567 85 SAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFL-LGVP 163 (374)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 163 (374)
++...... ..+..+|+|+||+.+.... ...+.++++||+||+|++.. ..+..+...+ ...+
T Consensus 193 ~~~~~~~~----~~~~~~I~i~T~~~l~~~~-----~~~~~~~~liIiDE~H~~~~---------~~~~~il~~~~~~~~ 254 (510)
T 2oca_A 193 GGASKDDK----YKNDAPVVVGTWQTVVKQP-----KEWFSQFGMMMNDECHLATG---------KSISSIISGLNNCMF 254 (510)
T ss_dssp GGCCTTGG----GCTTCSEEEEEHHHHTTSC-----GGGGGGEEEEEEETGGGCCH---------HHHHHHGGGCTTCCE
T ss_pred cCCccccc----cccCCcEEEEeHHHHhhch-----hhhhhcCCEEEEECCcCCCc---------ccHHHHHHhcccCcE
Confidence 43333222 3456899999999876542 23456789999999999865 2344444444 4678
Q ss_pred eeEEEeecCcccHH--HHHHhcCCCCCeEEEecc--------CCCceeEEEEeec----------CCcc----------h
Q 037567 164 FVALTATATEKVRI--DIINSLKLKNPYVTIASF--------DRKNLFYGVKVIN----------RGQS----------F 213 (374)
Q Consensus 164 ~i~~SaT~~~~~~~--~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~----------~~~~----------~ 213 (374)
+++|||||+..... .....++ +....... ..+.......... .... .
T Consensus 255 ~l~lSATp~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (510)
T 2oca_A 255 KFGLSGSLRDGKANIMQYVGMFG---EIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSK 331 (510)
T ss_dssp EEEEESCGGGCSSCHHHHHHHHC---SEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHH
T ss_pred EEEEEeCCCCCcccHHHhHHhhC---CeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHH
Confidence 99999999765421 1111221 11100000 0000000000000 0000 1
Q ss_pred HHHHHHHHHHh-hcCCCc-EEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEe-ccccc
Q 037567 214 VDELVQEILKS-VAGAGS-IIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVAT-MAFGM 290 (374)
Q Consensus 214 ~~~~~~~~~~~-~~~~~~-~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t-~~~~~ 290 (374)
....+.+++.. ...+++ ++||++ .+.++.+++.|.+.+..+..+||+++..+|+++++.|.+|+.+||||| +++++
T Consensus 332 ~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~ 410 (510)
T 2oca_A 332 RNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST 410 (510)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc
Confidence 11222333222 223444 555555 899999999999988899999999999999999999999999999999 99999
Q ss_pred cccccCccEEEEECCCCChhHHHHhhccCCCCCCceEEEEEee-ccCCCccccee
Q 037567 291 GIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYA-RSNFAKGDFYC 344 (374)
Q Consensus 291 G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~-~~~~~~~~~~~ 344 (374)
|+|+|++++||++++|+++..|.|++||+||.|+++.++++++ .++....+.+.
T Consensus 411 GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~~~~~~~~~~ 465 (510)
T 2oca_A 411 GISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLIDDAGVKPKSA 465 (510)
T ss_dssp SCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEEECCBCCSSS
T ss_pred ccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEeecchhhhhhhh
Confidence 9999999999999999999999999999999998874444444 34444444443
No 35
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=2.3e-40 Score=331.59 Aligned_cols=310 Identities=19% Similarity=0.246 Sum_probs=232.8
Q ss_pred hHHHhHcCCCCCchhHHHHHHHHHc----CC--CEEEEccCCCCchhhhhcccc---ccCCcEEEEcchHHHHHHHHHHH
Q 037567 3 STLKKYFGYSVFRPYQKDVIQRIIE----KR--DCLVVMATGSGKSLCYQLPPL---VTGKTALVVSPLISLMQDQVMSL 73 (374)
Q Consensus 3 ~~l~~~~~~~~~~~~Q~~~~~~~~~----~~--~~l~~a~tGsGKT~~~~l~~~---~~~~~~lil~P~~~l~~q~~~~~ 73 (374)
+.|...|+|. ++|+|.++++.+++ ++ ++++++|||+|||.+++++++ ..+++++|++||++|+.|+.+.+
T Consensus 594 ~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~ 672 (1151)
T 2eyq_A 594 QLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNF 672 (1151)
T ss_dssp HHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHH
Confidence 4566778996 79999999999886 55 899999999999988776553 46789999999999999999999
Q ss_pred HHc----CCceEEcCCCCCchhh---hhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcch
Q 037567 74 KQR----GINAEFLGSAQTDSSV---QTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFR 146 (374)
Q Consensus 74 ~~~----~~~~~~~~~~~~~~~~---~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~ 146 (374)
.+. +..+..+.+....... ......+.++|+|+||+.+... ..+.++++||+||+|++..
T Consensus 673 ~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~-------~~~~~l~lvIiDEaH~~g~------ 739 (1151)
T 2eyq_A 673 RDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSD-------VKFKDLGLLIVDEEHRFGV------ 739 (1151)
T ss_dssp HHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSC-------CCCSSEEEEEEESGGGSCH------
T ss_pred HHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCC-------ccccccceEEEechHhcCh------
Confidence 853 4556665554333322 2334456789999999866432 2357889999999999632
Q ss_pred HHHHHHHHHHHhcCCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEe-ccCCCceeEEEEeecCCcchHHHHHHHHHHhh
Q 037567 147 LEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTIA-SFDRKNLFYGVKVINRGQSFVDELVQEILKSV 225 (374)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (374)
.....+.....+.++++|||||.+...... ..+..+...... ......+... ..... ...+...+++..
T Consensus 740 ---~~~~~l~~l~~~~~vl~lSATp~p~~l~~~--~~~~~~~~~i~~~~~~r~~i~~~--~~~~~---~~~i~~~il~~l 809 (1151)
T 2eyq_A 740 ---RHKERIKAMRANVDILTLTATPIPRTLNMA--MSGMRDLSIIATPPARRLAVKTF--VREYD---SMVVREAILREI 809 (1151)
T ss_dssp ---HHHHHHHHHHTTSEEEEEESSCCCHHHHHH--HTTTSEEEECCCCCCBCBCEEEE--EEECC---HHHHHHHHHHHH
T ss_pred ---HHHHHHHHhcCCCCEEEEcCCCChhhHHHH--HhcCCCceEEecCCCCccccEEE--EecCC---HHHHHHHHHHHH
Confidence 112223333456789999999987654322 223222222111 1111122111 11111 234445556666
Q ss_pred cCCCcEEEEecchhHHHHHHHHHHHc--CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEE
Q 037567 226 AGAGSIIVYCMTIKDVEEISKALKQL--GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHY 303 (374)
Q Consensus 226 ~~~~~~lVf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~ 303 (374)
..+++++|||++++.++.+++.|++. +..+..+||+++..+|.++++.|.+|+.+|||||+++++|+|+|++++||.+
T Consensus 810 ~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~ 889 (1151)
T 2eyq_A 810 LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 889 (1151)
T ss_dssp TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEET
T ss_pred hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEe
Confidence 67899999999999999999999987 7889999999999999999999999999999999999999999999999998
Q ss_pred CC-CCChhHHHHhhccCCCCCCceEEEEEeeccC
Q 037567 304 GC-PKTLESYYQESGRCGRDGIASVCWLYYARSN 336 (374)
Q Consensus 304 ~~-p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 336 (374)
+. ++++.++.||+||+||.|+.|.|++++++.+
T Consensus 890 ~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 890 RADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp TTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred CCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 87 5689999999999999999999999987653
No 36
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.8e-41 Score=314.37 Aligned_cols=293 Identities=19% Similarity=0.191 Sum_probs=216.6
Q ss_pred CCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHHcCCc-eEEcCCCCCchh
Q 037567 13 VFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGIN-AEFLGSAQTDSS 91 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~-~~~~~~~~~~~~ 91 (374)
+|+|+|.++++.+.+++++++.+|||+|||++++.++...+.++||++|+++|+.||.+++.+++.. +..+.+....
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-- 170 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-- 170 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC--
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC--
Confidence 6999999999999999999999999999999998888877899999999999999999999999888 7777765432
Q ss_pred hhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCeeEEEeec
Q 037567 92 VQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATA 171 (374)
Q Consensus 92 ~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 171 (374)
..+|+|+||+.+..... .....+++||+||+|++.+.+. ..+...++..+++++||||
T Consensus 171 --------~~~Ivv~T~~~l~~~~~-----~~~~~~~liIvDEaH~~~~~~~---------~~~~~~~~~~~~l~lSATp 228 (472)
T 2fwr_A 171 --------LKPLTVSTYDSAYVNAE-----KLGNRFMLLIFDEVHHLPAESY---------VQIAQMSIAPFRLGLTATF 228 (472)
T ss_dssp --------CCSEEEEEHHHHHHTHH-----HHTTTCSEEEEETGGGTTSTTT---------HHHHHTCCCSEEEEEESCC
T ss_pred --------cCCEEEEEcHHHHHHHH-----HhcCCCCEEEEECCcCCCChHH---------HHHHHhcCCCeEEEEecCc
Confidence 35899999998754422 2235689999999999976442 2244455678899999999
Q ss_pred CcccHHH--HHHhcC---------------CCCCeEEEeccCCC---------------------ce----eEEEE-ee-
Q 037567 172 TEKVRID--IINSLK---------------LKNPYVTIASFDRK---------------------NL----FYGVK-VI- 207 (374)
Q Consensus 172 ~~~~~~~--~~~~~~---------------~~~~~~~~~~~~~~---------------------~~----~~~~~-~~- 207 (374)
....... +...++ +.++.......... .. ...+. ..
T Consensus 229 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 308 (472)
T 2fwr_A 229 EREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVM 308 (472)
T ss_dssp CCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTT
T ss_pred cCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHH
Confidence 8532110 111110 11111100000000 00 00000 00
Q ss_pred ----c-----------------CCcchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHH
Q 037567 208 ----N-----------------RGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKA 266 (374)
Q Consensus 208 ----~-----------------~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 266 (374)
. .......+.+.+++.. ..++++||||++.+.++.+++.|. +..+||+++..+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~ 382 (472)
T 2fwr_A 309 ASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREE 382 (472)
T ss_dssp TTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHH
T ss_pred HhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHH
Confidence 0 0011223445555555 468899999999999999999873 568999999999
Q ss_pred HHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCCChhHHHHhhccCCCCCCc-eEE--EEEeecc
Q 037567 267 REEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIA-SVC--WLYYARS 335 (374)
Q Consensus 267 r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~-g~~--~~~~~~~ 335 (374)
|+++++.|++|+.+|||+|+++++|+|+|++++||++++|+|+..|.|++||+||.|++ +.+ +.++...
T Consensus 383 R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 383 REEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp HHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred HHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999865 443 4444443
No 37
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=2.5e-41 Score=334.15 Aligned_cols=325 Identities=17% Similarity=0.172 Sum_probs=185.3
Q ss_pred HcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcccccc--------CCcEEEEcchHHHHHHHHHHHHHc---
Q 037567 8 YFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVT--------GKTALVVSPLISLMQDQVMSLKQR--- 76 (374)
Q Consensus 8 ~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~--------~~~~lil~P~~~l~~q~~~~~~~~--- 76 (374)
..|+.+|+|+|.++++.+++++++++.+|||+|||++|+++++.. +.++||++|+++|+.||.+.++++
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 322 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 345778999999999999999999999999999999998887653 778999999999999999999876
Q ss_pred -CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHH-HhcCccEEEEeccchhhcccCcchHHHHHHHH
Q 037567 77 -GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDK 154 (374)
Q Consensus 77 -~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~-~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~ 154 (374)
++.+..+.++........ .....++|+|+||+++...+.. ... .+.++++||+||||++...+. +......+..
T Consensus 323 ~~~~v~~~~G~~~~~~~~~-~~~~~~~IvI~Tp~~L~~~l~~--~~~~~l~~~~liViDEaH~~~~~~~-~~~i~~~~~~ 398 (936)
T 4a2w_A 323 QGYSVQGISGENFSNVSVE-KVIEDSDIIVVTPQILVNSFED--GTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYLE 398 (936)
T ss_dssp TTCCEEEECCC-----CCH-HHHHHCSEEEECHHHHHHHHHS--SSCCCGGGCSEEEEETGGGCSTTCH-HHHHHHHHHH
T ss_pred cCceEEEEECCcchhhHHH-HhccCCCEEEecHHHHHHHHHc--CccccccCCCEEEEECccccCCCcc-HHHHHHHHHH
Confidence 777777776654333221 2223479999999998665432 112 345689999999999876442 2211111111
Q ss_pred H-HH-hcCCCCeeEEEeecCccc----------HHHHHHhcCC-----------------CCCeEEEeccC--CCce---
Q 037567 155 L-RT-FLLGVPFVALTATATEKV----------RIDIINSLKL-----------------KNPYVTIASFD--RKNL--- 200 (374)
Q Consensus 155 ~-~~-~~~~~~~i~~SaT~~~~~----------~~~~~~~~~~-----------------~~~~~~~~~~~--~~~~--- 200 (374)
. .. ..+..++++||||+.... ...+...+.. ..+........ ....
T Consensus 399 ~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~ 478 (936)
T 4a2w_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (936)
T ss_dssp HHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHH
T ss_pred HhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHH
Confidence 1 11 133577999999996421 1111111211 01111100000 0000
Q ss_pred ----------------e-------EEEEeecC------------------------------------------------
Q 037567 201 ----------------F-------YGVKVINR------------------------------------------------ 209 (374)
Q Consensus 201 ----------------~-------~~~~~~~~------------------------------------------------ 209 (374)
. ........
T Consensus 479 ~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i 558 (936)
T 4a2w_A 479 IISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 558 (936)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 00000000
Q ss_pred ---------------------------------------------------CcchHHHHHHHHHHhh---cCCCcEEEEe
Q 037567 210 ---------------------------------------------------GQSFVDELVQEILKSV---AGAGSIIVYC 235 (374)
Q Consensus 210 ---------------------------------------------------~~~~~~~~~~~~~~~~---~~~~~~lVf~ 235 (374)
........+.+++... ..+.++||||
T Consensus 559 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~ 638 (936)
T 4a2w_A 559 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFA 638 (936)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEE
T ss_pred hcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEe
Confidence 0000111122222221 3568999999
Q ss_pred cchhHHHHHHHHHHHc------------CCceeeeecCCChHHHHHHHHhhhc-CCeeEEEEeccccccccccCccEEEE
Q 037567 236 MTIKDVEEISKALKQL------------GVKAGTYHGQMGSKAREEAHRLFIR-DEIRVMVATMAFGMGIDKPDVRHVIH 302 (374)
Q Consensus 236 ~~~~~~~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~ilv~t~~~~~G~d~~~~~~vi~ 302 (374)
+++..++.+++.|.+. |.....+||+++..+|..+++.|++ |+.+|||||+++++|+|+|++++||+
T Consensus 639 ~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~ 718 (936)
T 4a2w_A 639 KTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL 718 (936)
T ss_dssp SSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEE
T ss_pred CCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEE
Confidence 9999999999999986 4455567889999999999999999 99999999999999999999999999
Q ss_pred ECCCCChhHHHHhhccCCCCCCceEEEEEeeccCCC
Q 037567 303 YGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338 (374)
Q Consensus 303 ~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 338 (374)
+++|+|+..|+||+|| ||. ..|.++.++...+..
T Consensus 719 yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 719 YEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp ESCCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred eCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 9999999999999999 998 678888888776543
No 38
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.3e-41 Score=334.06 Aligned_cols=308 Identities=22% Similarity=0.282 Sum_probs=222.9
Q ss_pred HHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcccc---ccCCcEEEEcchHHHHHHHHHHHHHc--CCc
Q 037567 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL---VTGKTALVVSPLISLMQDQVMSLKQR--GIN 79 (374)
Q Consensus 5 l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~---~~~~~~lil~P~~~l~~q~~~~~~~~--~~~ 79 (374)
+...++|+ |+|+|.++++.+.+++++++.+|||||||++|++++. ..+.+++|++|+++|+.|+++.+... +..
T Consensus 32 ~~~~~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~ 110 (997)
T 4a4z_A 32 PARSWPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVN 110 (997)
T ss_dssp CSCCCSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC--CC
T ss_pred HHHhCCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcCCCe
Confidence 45567886 8999999999999999999999999999998776655 35788999999999999999999986 456
Q ss_pred eEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhc
Q 037567 80 AEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFL 159 (374)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~ 159 (374)
+..+.++... ....+|+|+||+.|...+.. ....+.++++|||||+|.+.+++.... +.++...+
T Consensus 111 v~~l~G~~~~--------~~~~~IlV~Tpe~L~~~l~~--~~~~l~~l~lvViDEaH~l~d~~~g~~-----~e~ii~~l 175 (997)
T 4a4z_A 111 IGLITGDVQI--------NPDANCLIMTTEILRSMLYR--GADLIRDVEFVIFDEVHYVNDQDRGVV-----WEEVIIML 175 (997)
T ss_dssp EEEECSSCEE--------CTTSSEEEEEHHHHHHHHHH--TCSGGGGEEEEEECCTTCCCTTCTTCC-----HHHHHHHS
T ss_pred EEEEeCCCcc--------CCCCCEEEECHHHHHHHHHh--CchhhcCCCEEEEECcccccccchHHH-----HHHHHHhc
Confidence 6666664422 23468999999988655432 223457889999999999988765532 22333333
Q ss_pred -CCCCeeEEEeecCcccHHHHHHhcCC---CCCeEEEeccCCCceeEEEE-------eec--------------------
Q 037567 160 -LGVPFVALTATATEKVRIDIINSLKL---KNPYVTIASFDRKNLFYGVK-------VIN-------------------- 208 (374)
Q Consensus 160 -~~~~~i~~SaT~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-------~~~-------------------- 208 (374)
++.++++||||+++.. .+..+++. .+..+.........+...+. ...
T Consensus 176 ~~~v~iIlLSAT~~n~~--ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 253 (997)
T 4a4z_A 176 PQHVKFILLSATVPNTY--EFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGE 253 (997)
T ss_dssp CTTCEEEEEECCCTTHH--HHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC--
T ss_pred ccCCCEEEEcCCCCChH--HHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcc
Confidence 4689999999987654 44555542 11111111111111111100 000
Q ss_pred -----------------------------------------------------------------CCcchHHHHHHHHHH
Q 037567 209 -----------------------------------------------------------------RGQSFVDELVQEILK 223 (374)
Q Consensus 209 -----------------------------------------------------------------~~~~~~~~~~~~~~~ 223 (374)
........++..+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~ 333 (997)
T 4a4z_A 254 SAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRK 333 (997)
T ss_dssp ---------------------------------------------------------------CCCCTTHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHh
Confidence 001112233333322
Q ss_pred hhcCCCcEEEEecchhHHHHHHHHHHHcCC---------------------------------------ceeeeecCCCh
Q 037567 224 SVAGAGSIIVYCMTIKDVEEISKALKQLGV---------------------------------------KAGTYHGQMGS 264 (374)
Q Consensus 224 ~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~---------------------------------------~~~~~~~~~~~ 264 (374)
....++||||+++..++.++..|.+.++ .+..+||++++
T Consensus 334 --~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~ 411 (997)
T 4a4z_A 334 --RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLP 411 (997)
T ss_dssp --TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCH
T ss_pred --CCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCH
Confidence 2457999999999999999999876554 46899999999
Q ss_pred HHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEECCCC---------ChhHHHHhhccCCCCC--CceEEEEEee
Q 037567 265 KAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPK---------TLESYYQESGRCGRDG--IASVCWLYYA 333 (374)
Q Consensus 265 ~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~~p~---------s~~~~~Q~~GR~~R~~--~~g~~~~~~~ 333 (374)
.+|..+++.|..|.++|||||+++++|+|+|+ ..||+.+.+. |+.+|.||+|||||.| ..|.+++++.
T Consensus 412 ~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 412 IVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp HHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred HHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecC
Confidence 99999999999999999999999999999999 5556555554 9999999999999988 5788888873
No 39
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=4.5e-40 Score=309.66 Aligned_cols=323 Identities=15% Similarity=0.133 Sum_probs=227.1
Q ss_pred hHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc---cCCcEEEEcchHHHHHHHHHHHHH----
Q 037567 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV---TGKTALVVSPLISLMQDQVMSLKQ---- 75 (374)
Q Consensus 3 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~---~~~~~lil~P~~~l~~q~~~~~~~---- 75 (374)
++.++.+|| .|+|+|..+++.+++|+ +..++||+|||++|.+|++. .+..++|++||++||.|..+++..
T Consensus 74 ea~~r~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~ 150 (844)
T 1tf5_A 74 EASRRVTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEF 150 (844)
T ss_dssp HHHHHHHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 345567999 89999999999999998 99999999999999999873 477899999999999998888765
Q ss_pred cCCceEEcCCCCCchhhhhhhhcCCeeEEEEcCccc-ccCchhh----HHHHHhcCccEEEEeccchhh-cccCcc----
Q 037567 76 RGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKA-CIIPISF----WSKLLKAGVCLFAVDEAHCIS-EWGHDF---- 145 (374)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l-~~~~~~~----~~~~~~~~~~~vviDE~h~~~-~~~~~~---- 145 (374)
.|+++.++.++...... .....++|+|+||+.| .+++... .......++.++|+||||.+. +.+...
T Consensus 151 lgl~v~~i~gg~~~~~r---~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIis 227 (844)
T 1tf5_A 151 LGLTVGLNLNSMSKDEK---REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIIS 227 (844)
T ss_dssp TTCCEEECCTTSCHHHH---HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEE
T ss_pred cCCeEEEEeCCCCHHHH---HHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhc
Confidence 47888877776543322 2224589999999998 3332221 123445778999999999986 443210
Q ss_pred ------hHHHHHHHHHHHhcC----------CCCee-----------------EEEeecCcc---c--------------
Q 037567 146 ------RLEYKQLDKLRTFLL----------GVPFV-----------------ALTATATEK---V-------------- 175 (374)
Q Consensus 146 ------~~~~~~~~~~~~~~~----------~~~~i-----------------~~SaT~~~~---~-------------- 175 (374)
...+..+..+...++ ..++. ++|||.+.- .
T Consensus 228 g~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~ 307 (844)
T 1tf5_A 228 GQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDV 307 (844)
T ss_dssp EEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTT
T ss_pred CCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCC
Confidence 112334444444443 23333 566664321 0
Q ss_pred -------------------------------------------------------------------------HHHHHHh
Q 037567 176 -------------------------------------------------------------------------RIDIINS 182 (374)
Q Consensus 176 -------------------------------------------------------------------------~~~~~~~ 182 (374)
...+...
T Consensus 308 dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~i 387 (844)
T 1tf5_A 308 DYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNI 387 (844)
T ss_dssp TEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHH
T ss_pred ceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHH
Confidence 0111111
Q ss_pred cCCCCCeEEEeccCCCceeEE--EEeecCCcchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeec
Q 037567 183 LKLKNPYVTIASFDRKNLFYG--VKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHG 260 (374)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~ 260 (374)
+++. +.....+.+..... ...+.........++..+.+....+.++||||+++..++.+++.|.+.|+++..+||
T Consensus 388 Y~l~---vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg 464 (844)
T 1tf5_A 388 YNMQ---VVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNA 464 (844)
T ss_dssp HCCC---EEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECS
T ss_pred hCCc---eEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeC
Confidence 1111 00011111111111 011222223334444444443346789999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhhhcCCeeEEEEecccccccccc--------CccEEEEECCCCChhHHHHhhccCCCCCCceEEEEEe
Q 037567 261 QMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP--------DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYY 332 (374)
Q Consensus 261 ~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~--------~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~ 332 (374)
++...++..+...++.| .|+|||+++++|+|++ +..+||+++.|.|...|+||+||+||.|.+|.+++|+
T Consensus 465 ~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~v 542 (844)
T 1tf5_A 465 KNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYL 542 (844)
T ss_dssp SCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEE
T ss_pred CccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEe
Confidence 98877777666666655 6999999999999999 7889999999999999999999999999999999999
Q ss_pred eccC
Q 037567 333 ARSN 336 (374)
Q Consensus 333 ~~~~ 336 (374)
+.+|
T Consensus 543 s~eD 546 (844)
T 1tf5_A 543 SMED 546 (844)
T ss_dssp ETTS
T ss_pred cHHH
Confidence 9887
No 40
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.4e-40 Score=331.47 Aligned_cols=310 Identities=19% Similarity=0.235 Sum_probs=217.9
Q ss_pred hHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc----cCCcEEEEcchHHHHHHHHHHHHHc--
Q 037567 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV----TGKTALVVSPLISLMQDQVMSLKQR-- 76 (374)
Q Consensus 3 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~----~~~~~lil~P~~~l~~q~~~~~~~~-- 76 (374)
+.|.+.+||. | |+|.++++.+++++++++.||||||||+ |.++++. .+.+++|++|+++|+.|+.+.++.+
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~ 124 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAE 124 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHh
Confidence 4566779999 9 9999999999999999999999999997 6666554 4789999999999999999999865
Q ss_pred --CC----ceEEcCCCCCchhh--hhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHH
Q 037567 77 --GI----NAEFLGSAQTDSSV--QTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLE 148 (374)
Q Consensus 77 --~~----~~~~~~~~~~~~~~--~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~ 148 (374)
+. .+..+.++...... ....... ++|+|+||++|..++.. +.+++++|+||||++.+++..++..
T Consensus 125 ~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~------L~~l~~lViDEah~~l~~~~~~~~i 197 (1054)
T 1gku_B 125 KAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE------LGHFDFIFVDDVDAILKASKNVDKL 197 (1054)
T ss_dssp TTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT------SCCCSEEEESCHHHHHTSTHHHHHH
T ss_pred hcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH------hccCCEEEEeChhhhhhccccHHHH
Confidence 34 55666665544432 1122223 89999999999877665 4588999999999998865433222
Q ss_pred HHHHHHH-----HHhcCCCCeeEEEeecCccc--HHHHHH-hcCCCCCeEEEeccCCCceeEEEEeecCCcchHHHHHHH
Q 037567 149 YKQLDKL-----RTFLLGVPFVALTATATEKV--RIDIIN-SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQE 220 (374)
Q Consensus 149 ~~~~~~~-----~~~~~~~~~i~~SaT~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (374)
+..+... .......+.+++|||++... ...+.. ........ ......++..... ... ....+.+
T Consensus 198 ~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~i~v~~---~~~~~~~i~~~~~-~~~----k~~~L~~ 269 (1054)
T 1gku_B 198 LHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLNFDIGS---SRITVRNVEDVAV-NDE----SISTLSS 269 (1054)
T ss_dssp HHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHCCCCSC---CEECCCCEEEEEE-SCC----CTTTTHH
T ss_pred HHHhCcchhhhhhhcccCCceEEEEecCCCchhHHHHHhhcceEEEccC---cccCcCCceEEEe-chh----HHHHHHH
Confidence 2211100 00023578999999988862 011111 11111110 1111122222211 111 1223334
Q ss_pred HHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEE----eccccccccccC
Q 037567 221 ILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVA----TMAFGMGIDKPD 296 (374)
Q Consensus 221 ~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~----t~~~~~G~d~~~ 296 (374)
+++.. ++++||||+++..++.+++.|++. +.+..+||++ ..+++.|++|+.+|||| |+++++|+|+|+
T Consensus 270 ll~~~--~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~ 341 (1054)
T 1gku_B 270 ILEKL--GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPE 341 (1054)
T ss_dssp HHTTS--CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTT
T ss_pred HHhhc--CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCC
Confidence 44432 688999999999999999999988 8999999997 37788999999999999 899999999999
Q ss_pred c-cEEEEECCC---------------------------------------------------------------------
Q 037567 297 V-RHVIHYGCP--------------------------------------------------------------------- 306 (374)
Q Consensus 297 ~-~~vi~~~~p--------------------------------------------------------------------- 306 (374)
+ ++||+++.|
T Consensus 342 VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 421 (1054)
T 1gku_B 342 RIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEV 421 (1054)
T ss_dssp TCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEE
T ss_pred cccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecce
Confidence 5 999999999
Q ss_pred --CChhHHHHhhccCCCCCCceE--EEEEeeccCCC
Q 037567 307 --KTLESYYQESGRCGRDGIASV--CWLYYARSNFA 338 (374)
Q Consensus 307 --~s~~~~~Q~~GR~~R~~~~g~--~~~~~~~~~~~ 338 (374)
.+..+|+||+||+||.|.+|. ++.++..++..
T Consensus 422 ~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~ 457 (1054)
T 1gku_B 422 IFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSE 457 (1054)
T ss_dssp EEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHH
T ss_pred ecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHH
Confidence 789999999999999877753 66666665543
No 41
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=4.7e-40 Score=312.57 Aligned_cols=305 Identities=15% Similarity=0.170 Sum_probs=194.2
Q ss_pred CCchhHHHHHHHHHc----C-CCEEEEccCCCCchhhhhccccc------------cCCcEEEEcchHHHHHHHH-HHHH
Q 037567 13 VFRPYQKDVIQRIIE----K-RDCLVVMATGSGKSLCYQLPPLV------------TGKTALVVSPLISLMQDQV-MSLK 74 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~----~-~~~l~~a~tGsGKT~~~~l~~~~------------~~~~~lil~P~~~l~~q~~-~~~~ 74 (374)
.|+|+|.++++.+++ + +++++++|||+|||++++..+.. ..+++||++|+++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 699999999999876 4 56899999999999886544321 4588999999999999999 8888
Q ss_pred HcCCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCch--hhHHHHHhcCccEEEEeccchhhcccCcchHHHHHH
Q 037567 75 QRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPI--SFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQL 152 (374)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~--~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~ 152 (374)
.++.....+.+. ......+|+|+||+++..... .....+....+++||+||||++...+. ..+
T Consensus 258 ~~~~~~~~~~~~---------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~------~~~ 322 (590)
T 3h1t_A 258 PFGDARHKIEGG---------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDN------SNW 322 (590)
T ss_dssp TTCSSEEECCC-----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------------C
T ss_pred hcchhhhhhhcc---------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccch------HHH
Confidence 887766554422 123456999999999876532 112233345689999999999865321 234
Q ss_pred HHHHHhcCCCCeeEEEeecCcccHHHHHHhcCCC----------------CCeEEEeccCCC--ceeEEE----------
Q 037567 153 DKLRTFLLGVPFVALTATATEKVRIDIINSLKLK----------------NPYVTIASFDRK--NLFYGV---------- 204 (374)
Q Consensus 153 ~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~--~~~~~~---------- 204 (374)
..+...+++.++++|||||...........++.. ++.......... ......
T Consensus 323 ~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (590)
T 3h1t_A 323 REILEYFEPAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREI 402 (590)
T ss_dssp HHHHHHSTTSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------
T ss_pred HHHHHhCCcceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccc
Confidence 5556666778899999999976655555444321 111111000000 000000
Q ss_pred --EeecCC-----------cchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCc--------eeeeecCCC
Q 037567 205 --KVINRG-----------QSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVK--------AGTYHGQMG 263 (374)
Q Consensus 205 --~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~--------~~~~~~~~~ 263 (374)
...... ...+.+.+.+.++....++++||||+++..++.+++.|.+.+.. +..+||+++
T Consensus 403 ~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~ 482 (590)
T 3h1t_A 403 PDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG 482 (590)
T ss_dssp ------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH
T ss_pred ccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh
Confidence 000000 00111223333444456789999999999999999999876432 667888865
Q ss_pred hHHHHHHHHhhhcCCee---EEEEeccccccccccCccEEEEECCCCChhHHHHhhccCCCCCC--ceEEEEEee
Q 037567 264 SKAREEAHRLFIRDEIR---VMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGI--ASVCWLYYA 333 (374)
Q Consensus 264 ~~~r~~~~~~f~~g~~~---ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~--~g~~~~~~~ 333 (374)
++|..+++.|++|+.+ |+++|+++++|+|+|++++||++++|+|+..|+||+||++|.+. ++..+++++
T Consensus 483 -~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D 556 (590)
T 3h1t_A 483 -KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIID 556 (590)
T ss_dssp -HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEE
T ss_pred -HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEe
Confidence 4799999999998765 88899999999999999999999999999999999999999875 444444444
No 42
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.6e-39 Score=297.72 Aligned_cols=284 Identities=17% Similarity=0.137 Sum_probs=202.7
Q ss_pred CCCCCchhHHHHHHHHHcCCCE-EEEccCCCCchhhhhccccc----cCCcEEEEcchHHHHHHHHHHHHHcCCceEEcC
Q 037567 10 GYSVFRPYQKDVIQRIIEKRDC-LVVMATGSGKSLCYQLPPLV----TGKTALVVSPLISLMQDQVMSLKQRGINAEFLG 84 (374)
Q Consensus 10 ~~~~~~~~Q~~~~~~~~~~~~~-l~~a~tGsGKT~~~~l~~~~----~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 84 (374)
|+.+++|.|+ +++.+++++++ ++.+|||||||++|+++++. .+.+++|++|+++|+.|+.+.+... .+....
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~--~v~~~~ 77 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRGL--PIRYQT 77 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS--CEEECC
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhcCc--eeeeee
Confidence 6789999986 79999998887 88999999999998888754 4779999999999999999998643 322221
Q ss_pred CCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCe
Q 037567 85 SAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPF 164 (374)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (374)
..... .......+.++|++.+...+ .....+.++++||+||+|++ +.+. ......+ ......++.++
T Consensus 78 ~~~~~------~~~~~~~i~~~t~~~l~~~l---~~~~~l~~~~~iViDEah~~-~~~~--~~~~~~~-~~~~~~~~~~~ 144 (451)
T 2jlq_A 78 PAVKS------DHTGREIVDLMCHATFTTRL---LSSTRVPNYNLIVMDEAHFT-DPCS--VAARGYI-STRVEMGEAAA 144 (451)
T ss_dssp TTCSC------CCCSSCCEEEEEHHHHHHHH---HHCSCCCCCSEEEEETTTCC-SHHH--HHHHHHH-HHHHHTTSCEE
T ss_pred ccccc------cCCCCceEEEEChHHHHHHh---hCcccccCCCEEEEeCCccC-Ccch--HHHHHHH-HHhhcCCCceE
Confidence 11111 12234568889988764322 12233568899999999987 2111 1111112 12223457899
Q ss_pred eEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEEEeecCCcchHHHHHHHHHHhhcCCCcEEEEecchhHHHHH
Q 037567 165 VALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEI 244 (374)
Q Consensus 165 i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l 244 (374)
++||||++..... ........+.... ..+. ........ .+.. ..+++||||++++.++.+
T Consensus 145 i~~SAT~~~~~~~----~~~~~~~~~~~~~-~~p~---------~~~~~~~~----~l~~--~~~~~lVF~~s~~~a~~l 204 (451)
T 2jlq_A 145 IFMTATPPGSTDP----FPQSNSPIEDIER-EIPE---------RSWNTGFD----WITD--YQGKTVWFVPSIKAGNDI 204 (451)
T ss_dssp EEECSSCTTCCCS----SCCCSSCEEEEEC-CCCS---------SCCSSSCH----HHHH--CCSCEEEECSSHHHHHHH
T ss_pred EEEccCCCccchh----hhcCCCceEecCc-cCCc---------hhhHHHHH----HHHh--CCCCEEEEcCCHHHHHHH
Confidence 9999999875432 1111222222211 1000 00011111 1222 467999999999999999
Q ss_pred HHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEEEC--------------------
Q 037567 245 SKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYG-------------------- 304 (374)
Q Consensus 245 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~~~-------------------- 304 (374)
++.|++.++.+..+|+++ ++++++.|.+|+.+|||||+++++|+|+|+ ++||+++
T Consensus 205 ~~~L~~~g~~~~~lh~~~----~~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~ 279 (451)
T 2jlq_A 205 ANCLRKSGKRVIQLSRKT----FDTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGP 279 (451)
T ss_dssp HHHHHTTTCCEEEECTTT----HHHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEE
T ss_pred HHHHHHcCCeEEECCHHH----HHHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeeccc
Confidence 999999999999999864 357899999999999999999999999999 9999988
Q ss_pred CCCChhHHHHhhccCCCCCC-ceEEEEEeec
Q 037567 305 CPKTLESYYQESGRCGRDGI-ASVCWLYYAR 334 (374)
Q Consensus 305 ~p~s~~~~~Q~~GR~~R~~~-~g~~~~~~~~ 334 (374)
.|.+..+|+||+||+||.|. +|.+++++..
T Consensus 280 ~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 280 IPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred ccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 7888877644
No 43
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=8.5e-40 Score=309.86 Aligned_cols=273 Identities=15% Similarity=0.121 Sum_probs=197.5
Q ss_pred CCchhHH-----HHHHHHH------cCCCEEEEccCCCCchhhhhccccc----cCCcEEEEcchHHHHHHHHHHHHHcC
Q 037567 13 VFRPYQK-----DVIQRII------EKRDCLVVMATGSGKSLCYQLPPLV----TGKTALVVSPLISLMQDQVMSLKQRG 77 (374)
Q Consensus 13 ~~~~~Q~-----~~~~~~~------~~~~~l~~a~tGsGKT~~~~l~~~~----~~~~~lil~P~~~l~~q~~~~~~~~~ 77 (374)
.|+++|. ++++.++ +++++++.||||||||++|+++++. .+.+++|++||++|+.|+.+.+..++
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~~~ 294 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGLP 294 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSC
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhcCC
Confidence 8999999 9999887 8999999999999999998887764 46789999999999999999988664
Q ss_pred CceEEcCCCCCchhhhhhhhcCCeeE-EEEcCcccccCchhhHHH------HHhcCccEEEEeccchhhcccCcchHHHH
Q 037567 78 INAEFLGSAQTDSSVQTKAETGYFQL-LFMTPEKACIIPISFWSK------LLKAGVCLFAVDEAHCISEWGHDFRLEYK 150 (374)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~i-~i~T~~~l~~~~~~~~~~------~~~~~~~~vviDE~h~~~~~~~~~~~~~~ 150 (374)
+.. ... .+ .++||+.+..++...... ..+.++++||+||+|++.. .......
T Consensus 295 i~~--~~~----------------~l~~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~---~~~~~~~ 353 (673)
T 2wv9_A 295 VRY--LTP----------------AVQREHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDP---ASIAARG 353 (673)
T ss_dssp CEE--CCC-------------------CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCH---HHHHHHH
T ss_pred eee--ecc----------------cccccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCc---cHHHHHH
Confidence 321 100 01 167888776665432110 1357899999999999821 1111222
Q ss_pred HHHHHHHhcCCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEEEeecCCcchHHHHHHHHHHhhcCCCc
Q 037567 151 QLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGS 230 (374)
Q Consensus 151 ~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (374)
.+..... ..+.++++||||+++.... ......+...... ...... ....+..+.+ .+++
T Consensus 354 ~l~~~~~-~~~~~vl~~SAT~~~~i~~----~~~~~~~i~~v~~----------~~~~~~---~~~~l~~l~~---~~~~ 412 (673)
T 2wv9_A 354 YIATRVE-AGEAAAIFMTATPPGTSDP----FPDTNSPVHDVSS----------EIPDRA---WSSGFEWITD---YAGK 412 (673)
T ss_dssp HHHHHHH-TTSCEEEEECSSCTTCCCS----SCCCSSCEEEEEC----------CCCSSC---CSSCCHHHHS---CCSC
T ss_pred HHHHhcc-ccCCcEEEEcCCCChhhhh----hcccCCceEEEee----------ecCHHH---HHHHHHHHHh---CCCC
Confidence 3333222 2468999999999876421 1111111111110 000011 1112222222 5789
Q ss_pred EEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEE--------
Q 037567 231 IIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIH-------- 302 (374)
Q Consensus 231 ~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~-------- 302 (374)
+||||++++.++.+++.|++.++.+..+||+ +|.++++.|.+|+.+|||||+++++|+|+| +++||+
T Consensus 413 ~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~ 487 (673)
T 2wv9_A 413 TVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPT 487 (673)
T ss_dssp EEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEE
T ss_pred EEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccce
Confidence 9999999999999999999999999999994 889999999999999999999999999999 999997
Q ss_pred ------------ECCCCChhHHHHhhccCCCC-CCceEEEEEe
Q 037567 303 ------------YGCPKTLESYYQESGRCGRD-GIASVCWLYY 332 (374)
Q Consensus 303 ------------~~~p~s~~~~~Q~~GR~~R~-~~~g~~~~~~ 332 (374)
++.|.+..+|.||+||+||. ++.|.+++++
T Consensus 488 vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~ 530 (673)
T 2wv9_A 488 ILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYG 530 (673)
T ss_dssp EECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEEC
T ss_pred eeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEE
Confidence 56889999999999999999 7899999996
No 44
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=4.3e-39 Score=293.53 Aligned_cols=269 Identities=14% Similarity=0.103 Sum_probs=187.2
Q ss_pred HHcCCCEEEEccCCCCchhhhhccccc----cCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhhhhhhhcCC
Q 037567 25 IIEKRDCLVVMATGSGKSLCYQLPPLV----TGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGY 100 (374)
Q Consensus 25 ~~~~~~~l~~a~tGsGKT~~~~l~~~~----~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (374)
+.+++++++.||||||||++|+++++. .+.+++|++||++|+.|+.+.+..++.. ....
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~~~v~--~~~~--------------- 67 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVK--FHTQ--------------- 67 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCEE--EESS---------------
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhcCCeE--Eecc---------------
Confidence 457899999999999999999877764 4679999999999999999999865432 1111
Q ss_pred eeE-EEEcCcccccCchhhHHHHH--------hcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCeeEEEeec
Q 037567 101 FQL-LFMTPEKACIIPISFWSKLL--------KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATA 171 (374)
Q Consensus 101 ~~i-~i~T~~~l~~~~~~~~~~~~--------~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 171 (374)
.+ .++||+.+..++.. ..+. +.+++++|+||+|.+ +.+ +......+..... ..+.++++||||+
T Consensus 68 -~~~~v~Tp~~l~~~l~~--~~l~~~~~~~~~~~~l~~vViDEah~~-~~~--~~~~~~~~~~~~~-~~~~~~l~~SAT~ 140 (440)
T 1yks_A 68 -AFSAHGSGREVIDAMCH--ATLTYRMLEPTRVVNWEVIIMDEAHFL-DPA--SIAARGWAAHRAR-ANESATILMTATP 140 (440)
T ss_dssp -CCCCCCCSSCCEEEEEH--HHHHHHHTSSSCCCCCSEEEETTTTCC-SHH--HHHHHHHHHHHHH-TTSCEEEEECSSC
T ss_pred -cceeccCCccceeeecc--cchhHhhhCcccccCccEEEEECcccc-Ccc--hHHHHHHHHHHhc-cCCceEEEEeCCC
Confidence 11 38899988776654 2222 578999999999998 211 1122222333222 2468899999999
Q ss_pred CcccHHHHHHhcCCCCCeEEEeccCCCceeEEEEeecCCcchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHc
Q 037567 172 TEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQL 251 (374)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~ 251 (374)
++.... ......+...... ....... ...+..+.+ .++++||||++++.++.+++.|++.
T Consensus 141 ~~~~~~----~~~~~~~~~~~~~----------~~~~~~~---~~~~~~l~~---~~~~~lVF~~s~~~a~~l~~~L~~~ 200 (440)
T 1yks_A 141 PGTSDE----FPHSNGEIEDVQT----------DIPSEPW---NTGHDWILA---DKRPTAWFLPSIRAANVMAASLRKA 200 (440)
T ss_dssp TTCCCS----SCCCSSCEEEEEC----------CCCSSCC---SSSCHHHHH---CCSCEEEECSCHHHHHHHHHHHHHT
T ss_pred Cchhhh----hhhcCCCeeEeee----------ccChHHH---HHHHHHHHh---cCCCEEEEeCCHHHHHHHHHHHHHc
Confidence 876431 1111111111100 0001111 111222222 4789999999999999999999999
Q ss_pred CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEE-------------------ECCCCChhHH
Q 037567 252 GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIH-------------------YGCPKTLESY 312 (374)
Q Consensus 252 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~-------------------~~~p~s~~~~ 312 (374)
++++..+|| ++|..+++.|.+|+.+|||||+++++|+|+| +++||+ ++.|.+..+|
T Consensus 201 ~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~ 275 (440)
T 1yks_A 201 GKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSA 275 (440)
T ss_dssp TCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHH
T ss_pred CCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHH
Confidence 999999999 4688899999999999999999999999999 999886 8889999999
Q ss_pred HHhhccCCCC-CCceEEEEEe---eccCCCcccc
Q 037567 313 YQESGRCGRD-GIASVCWLYY---ARSNFAKGDF 342 (374)
Q Consensus 313 ~Q~~GR~~R~-~~~g~~~~~~---~~~~~~~~~~ 342 (374)
.||+||+||. +..|.|++++ ++.+...++.
T Consensus 276 ~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~ 309 (440)
T 1yks_A 276 AQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCW 309 (440)
T ss_dssp HHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHH
T ss_pred HHhccccCCCCCCCceEEEEeccCChhhhhhhhh
Confidence 9999999997 6899999997 4555544433
No 45
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=7.6e-38 Score=293.77 Aligned_cols=323 Identities=19% Similarity=0.180 Sum_probs=215.2
Q ss_pred hHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc---cCCcEEEEcchHHHHHHHHHHHHHc---
Q 037567 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV---TGKTALVVSPLISLMQDQVMSLKQR--- 76 (374)
Q Consensus 3 ~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~---~~~~~lil~P~~~l~~q~~~~~~~~--- 76 (374)
++-++.+|. .|+|.|..+++.+++|+ +..++||+|||++|.+|++. .+..++|++||++||.|..+++..+
T Consensus 65 ea~~R~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~ 141 (853)
T 2fsf_A 65 EASKRVFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEF 141 (853)
T ss_dssp HHHHHHHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 455677887 69999999999999998 99999999999999998763 4778999999999999988887653
Q ss_pred -CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCccc-ccCchhhH----HHHHhcCccEEEEeccchhh-cccCcc----
Q 037567 77 -GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKA-CIIPISFW----SKLLKAGVCLFAVDEAHCIS-EWGHDF---- 145 (374)
Q Consensus 77 -~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l-~~~~~~~~----~~~~~~~~~~vviDE~h~~~-~~~~~~---- 145 (374)
|+++..+.++..... ......++|+|+||+.+ .+++.... ......++.++|+||+|.+. +.+...
T Consensus 142 lgl~v~~i~GG~~~~~---r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiS 218 (853)
T 2fsf_A 142 LGLTVGINLPGMPAPA---KREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIIS 218 (853)
T ss_dssp TTCCEEECCTTCCHHH---HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEE
T ss_pred cCCeEEEEeCCCCHHH---HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCccccccc
Confidence 788887777654322 12223589999999997 44433221 22345778999999999987 433210
Q ss_pred ------hHHHHHHHHHHHhcC---------------------CCCee------------------------EEEeecCcc
Q 037567 146 ------RLEYKQLDKLRTFLL---------------------GVPFV------------------------ALTATATEK 174 (374)
Q Consensus 146 ------~~~~~~~~~~~~~~~---------------------~~~~i------------------------~~SaT~~~~ 174 (374)
...+..+..+...++ ..++. ++|||.+.-
T Consensus 219 g~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~ 298 (853)
T 2fsf_A 219 GPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIML 298 (853)
T ss_dssp EC------------------------------------------------------------------------------
T ss_pred CCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchH
Confidence 001111222222221 11221 677775421
Q ss_pred ---cHH--------------------------------------------------------------------------
Q 037567 175 ---VRI-------------------------------------------------------------------------- 177 (374)
Q Consensus 175 ---~~~-------------------------------------------------------------------------- 177 (374)
...
T Consensus 299 ~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~k 378 (853)
T 2fsf_A 299 MHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEK 378 (853)
T ss_dssp ----------------------------------------------------------CCCCCEEEEEEEHHHHHTTSSE
T ss_pred HHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhh
Confidence 000
Q ss_pred -------------HHHHhcCCCCCeEEEeccCCCceeEEE--EeecCCcchHHHHHHHHHHhhcCCCcEEEEecchhHHH
Q 037567 178 -------------DIINSLKLKNPYVTIASFDRKNLFYGV--KVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVE 242 (374)
Q Consensus 178 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~ 242 (374)
.+...+++. +...+.+.+...... .++.........++..+......+.++||||+|+..++
T Consensus 379 l~GmTGTa~te~~ef~~iY~l~---vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se 455 (853)
T 2fsf_A 379 LAGMTGTADTEAFEFSSIYKLD---TVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSE 455 (853)
T ss_dssp EEEEECTTCCCHHHHHHHHCCE---EEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHH
T ss_pred hhcCCCCchhHHHHHHHHhCCc---EEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHH
Confidence 000000000 000001111111110 11222223333444444444346789999999999999
Q ss_pred HHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCc-------------------------
Q 037567 243 EISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV------------------------- 297 (374)
Q Consensus 243 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~------------------------- 297 (374)
.+++.|++.|+++..+||+....++..+.+.|+.| .|+|||+++++|+|++..
T Consensus 456 ~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~ 533 (853)
T 2fsf_A 456 LVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADW 533 (853)
T ss_dssp HHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHh
Confidence 99999999999999999998888888888889888 699999999999999873
Q ss_pred ------------cEEEEECCCCChhHHHHhhccCCCCCCceEEEEEeeccC
Q 037567 298 ------------RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN 336 (374)
Q Consensus 298 ------------~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 336 (374)
.+||+++.|.|...|.||+||+||.|.+|.+..|++.+|
T Consensus 534 ~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 534 QVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp HHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred hhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccH
Confidence 599999999999999999999999999999999999877
No 46
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=8.9e-39 Score=301.16 Aligned_cols=285 Identities=15% Similarity=0.099 Sum_probs=200.6
Q ss_pred CCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc----cCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCC
Q 037567 11 YSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV----TGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSA 86 (374)
Q Consensus 11 ~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~----~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 86 (374)
...+.|+|..+++.+.+++++++.||||||||++|+++++. .+.++||++|+++|+.|+.+.+... .+......
T Consensus 169 ~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~~~--~v~~~~~~ 246 (618)
T 2whx_A 169 ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRGL--PIRYQTPA 246 (618)
T ss_dssp CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS--CEEECCTT
T ss_pred cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhcCC--ceeEeccc
Confidence 35678888888888889999999999999999999887764 4679999999999999999988743 22221110
Q ss_pred CCchhhhhhhhcCCeeEEEEcCcccccCchh------hHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcC
Q 037567 87 QTDSSVQTKAETGYFQLLFMTPEKACIIPIS------FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLL 160 (374)
Q Consensus 87 ~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~------~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~ 160 (374)
. . .++||+.+..+... ......+.++++||+||||++ +.+ +......+..... .+
T Consensus 247 l------~---------~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~--~~~~~~~i~~~l~-~~ 307 (618)
T 2whx_A 247 V------K---------SDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPC--SVAARGYISTRVE-MG 307 (618)
T ss_dssp S------S---------CCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCC-SHH--HHHHHHHHHHHHH-HT
T ss_pred c------e---------eccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCC-Ccc--HHHHHHHHHHHhc-cc
Confidence 0 0 13445444433222 111112578999999999997 222 2222233332221 15
Q ss_pred CCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEEEeecCCcchHHHHHHHHHHhhcCCCcEEEEecchhH
Q 037567 161 GVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240 (374)
Q Consensus 161 ~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~ 240 (374)
+.++++||||++..... ........+.... ..+ .... ..++..+.+ ..+++||||++++.
T Consensus 308 ~~q~il~SAT~~~~~~~----~~~~~~~~~~v~~-~~~---------~~~~---~~ll~~l~~---~~~~~LVF~~s~~~ 367 (618)
T 2whx_A 308 EAAAIFMTATPPGSTDP----FPQSNSPIEDIER-EIP---------ERSW---NTGFDWITD---YQGKTVWFVPSIKA 367 (618)
T ss_dssp SCEEEEECSSCTTCCCS----SCCCSSCEEEEEC-CCC---------SSCC---SSSCHHHHH---CCSCEEEECSSHHH
T ss_pred CccEEEEECCCchhhhh----hhccCCceeeecc-cCC---------HHHH---HHHHHHHHh---CCCCEEEEECChhH
Confidence 78999999999876431 1111111111111 100 0111 112222222 47899999999999
Q ss_pred HHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEE--------------------
Q 037567 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV-------------------- 300 (374)
Q Consensus 241 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~v-------------------- 300 (374)
++.+++.|++.+..+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +++|
T Consensus 368 a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~ 442 (618)
T 2whx_A 368 GNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVI 442 (618)
T ss_dssp HHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEE
T ss_pred HHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceE
Confidence 999999999999999999984 788899999999999999999999999997 8887
Q ss_pred EEECCCCChhHHHHhhccCCCCCC-ceEEEEEee---ccCCCccc
Q 037567 301 IHYGCPKTLESYYQESGRCGRDGI-ASVCWLYYA---RSNFAKGD 341 (374)
Q Consensus 301 i~~~~p~s~~~~~Q~~GR~~R~~~-~g~~~~~~~---~~~~~~~~ 341 (374)
++++.|.+..+|+||+||+||.|. .|.+++++. +.|...+.
T Consensus 443 i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~ 487 (618)
T 2whx_A 443 LAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAH 487 (618)
T ss_dssp EEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHH
T ss_pred EcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHH
Confidence 677779999999999999999965 889999997 55554433
No 47
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=4.2e-37 Score=289.12 Aligned_cols=327 Identities=14% Similarity=0.084 Sum_probs=230.9
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc---cCCcEEEEcchHHHHHHHHHHHHH---
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV---TGKTALVVSPLISLMQDQVMSLKQ--- 75 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~---~~~~~lil~P~~~l~~q~~~~~~~--- 75 (374)
.++.++.+|+ .|++.|..+++.+++|+ +..++||+|||++|.+|++. .+..++|++|++.|+.|..+++..
T Consensus 101 rEa~~R~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~ 177 (922)
T 1nkt_A 101 REAAWRVLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHR 177 (922)
T ss_dssp HHHHHHHHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHh
Confidence 3466778999 89999999999999988 99999999999999988853 477899999999999988877764
Q ss_pred -cCCceEEcCCCCCchhhhhhhhcCCeeEEEEcCccc-ccCchhhH----HHHHhcCccEEEEeccchhh-cccCc----
Q 037567 76 -RGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKA-CIIPISFW----SKLLKAGVCLFAVDEAHCIS-EWGHD---- 144 (374)
Q Consensus 76 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l-~~~~~~~~----~~~~~~~~~~vviDE~h~~~-~~~~~---- 144 (374)
+|+.+.++.++...... .....++|+++||+.| .+++.... ......++.++|+||||.+. +.+..
T Consensus 178 ~lGLsv~~i~gg~~~~~r---~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLii 254 (922)
T 1nkt_A 178 FLGLQVGVILATMTPDER---RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLII 254 (922)
T ss_dssp HTTCCEEECCTTCCHHHH---HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEE
T ss_pred hcCCeEEEEeCCCCHHHH---HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceee
Confidence 47888887776543221 2223589999999987 34333221 23445678999999999986 33211
Q ss_pred ------chHHHHHHHHHHHhcC----------CCCee-----------------EEEeecCcccH--HHHH--H-hcCCC
Q 037567 145 ------FRLEYKQLDKLRTFLL----------GVPFV-----------------ALTATATEKVR--IDII--N-SLKLK 186 (374)
Q Consensus 145 ------~~~~~~~~~~~~~~~~----------~~~~i-----------------~~SaT~~~~~~--~~~~--~-~~~~~ 186 (374)
....+..+..+...++ ..++. ++|||.+.-.. ...+ . .+...
T Consensus 255 Sg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d 334 (922)
T 1nkt_A 255 SGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRD 334 (922)
T ss_dssp EEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBT
T ss_pred cCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcc
Confidence 1223345555555554 23444 67777653111 0000 0 01100
Q ss_pred -------------------------------------------CCeEEE-------------------------------
Q 037567 187 -------------------------------------------NPYVTI------------------------------- 192 (374)
Q Consensus 187 -------------------------------------------~~~~~~------------------------------- 192 (374)
......
T Consensus 335 ~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~ 414 (922)
T 1nkt_A 335 KDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHE 414 (922)
T ss_dssp TTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHH
T ss_pred cceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHH
Confidence 000000
Q ss_pred --------eccCCCceeEE--EEeecCCcchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCC
Q 037567 193 --------ASFDRKNLFYG--VKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQM 262 (374)
Q Consensus 193 --------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 262 (374)
.+.+.+..... ..++.........++..+.+....+.++||||+++..++.+++.|++.|+++..+||+.
T Consensus 415 iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~ 494 (922)
T 1nkt_A 415 IYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKY 494 (922)
T ss_dssp HHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred HhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCCh
Confidence 00011111100 01122222334445555544445678999999999999999999999999999999998
Q ss_pred ChHHHHHHHHhhhcCCeeEEEEeccccccccccCc---------------------------------------------
Q 037567 263 GSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV--------------------------------------------- 297 (374)
Q Consensus 263 ~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~--------------------------------------------- 297 (374)
...++..+.+.|+.| .|+|||+++++|+|++..
T Consensus 495 ~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (922)
T 1nkt_A 495 HEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAK 572 (922)
T ss_dssp HHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred hHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhh
Confidence 777777778888887 699999999999999974
Q ss_pred -------cEEEEECCCCChhHHHHhhccCCCCCCceEEEEEeeccC
Q 037567 298 -------RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN 336 (374)
Q Consensus 298 -------~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 336 (374)
.+||+++.|.|...|.|++||+||.|.+|.+..|++.+|
T Consensus 573 ~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD 618 (922)
T 1nkt_A 573 EVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGD 618 (922)
T ss_dssp HHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTS
T ss_pred HHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhH
Confidence 589999999999999999999999999999999998876
No 48
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1.8e-37 Score=307.00 Aligned_cols=317 Identities=16% Similarity=0.169 Sum_probs=221.6
Q ss_pred CCchhHHHHHHHHHcC--CCEEEEccCCCCchhhhhccccc---c--CCcEEEEcchHHHHHHHHHHH-HHcCCceEEcC
Q 037567 13 VFRPYQKDVIQRIIEK--RDCLVVMATGSGKSLCYQLPPLV---T--GKTALVVSPLISLMQDQVMSL-KQRGINAEFLG 84 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~--~~~l~~a~tGsGKT~~~~l~~~~---~--~~~~lil~P~~~l~~q~~~~~-~~~~~~~~~~~ 84 (374)
+|+|||.+++..++.. .++++.++||+|||+.++..+.. . ..++||+||+ .|+.||..++ +.++..+.++.
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v~~ 231 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFALFD 231 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEECC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEEEc
Confidence 6999999999988874 47899999999999887655432 2 4589999999 9999999999 56777776665
Q ss_pred CCCCchhhhh-hhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCC
Q 037567 85 SAQTDSSVQT-KAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVP 163 (374)
Q Consensus 85 ~~~~~~~~~~-~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (374)
+......... .......+|+|+|++.+...... ...+...++++||+||+|++.+.+......+..+..+.. ...+
T Consensus 232 ~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~-~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~--~~~~ 308 (968)
T 3dmq_A 232 DERYAEAQHDAYNPFDTEQLVICSLDFARRSKQR-LEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAE--HVPG 308 (968)
T ss_dssp HHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTT-THHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHT--TCSS
T ss_pred cchhhhhhhhcccccccCCEEEEcHHHHhhCHHH-HHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhh--cCCc
Confidence 4322111111 12234579999999988654322 244556789999999999997655544333344444432 3457
Q ss_pred eeEEEeecCcccHHHH---HHhcCCC---------------------------C--------------------------
Q 037567 164 FVALTATATEKVRIDI---INSLKLK---------------------------N-------------------------- 187 (374)
Q Consensus 164 ~i~~SaT~~~~~~~~~---~~~~~~~---------------------------~-------------------------- 187 (374)
+++|||||..+...++ ...+... .
T Consensus 309 ~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~ 388 (968)
T 3dmq_A 309 VLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQA 388 (968)
T ss_dssp EEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGG
T ss_pred EEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHhc
Confidence 9999999965321111 1100000 0
Q ss_pred --------------------------CeEEEe-ccCCCce------eEEEEe----------------------------
Q 037567 188 --------------------------PYVTIA-SFDRKNL------FYGVKV---------------------------- 206 (374)
Q Consensus 188 --------------------------~~~~~~-~~~~~~~------~~~~~~---------------------------- 206 (374)
...... ....... ......
T Consensus 389 ~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 468 (968)
T 3dmq_A 389 ANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDML 468 (968)
T ss_dssp TCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHHHH
T ss_pred ccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhhhc
Confidence 000000 0000000 000000
Q ss_pred --------------ecCCcchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHH-cCCceeeeecCCChHHHHHHH
Q 037567 207 --------------INRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQ-LGVKAGTYHGQMGSKAREEAH 271 (374)
Q Consensus 207 --------------~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~ 271 (374)
...........+.+++.. ..++++||||+++..++.+++.|.+ .|+++..+||+++..+|..++
T Consensus 469 ~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l 547 (968)
T 3dmq_A 469 YPERIYQEFEGDNATWWNFDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAA 547 (968)
T ss_dssp CSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHH
T ss_pred ChHHHHHHhhhhhhcccCccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHH
Confidence 001112234455555555 4788999999999999999999995 599999999999999999999
Q ss_pred HhhhcCC--eeEEEEeccccccccccCccEEEEECCCCChhHHHHhhccCCCCCCceEEEEEeec
Q 037567 272 RLFIRDE--IRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYAR 334 (374)
Q Consensus 272 ~~f~~g~--~~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 334 (374)
+.|++|+ .+|||+|+++++|+|+|++++||++++|+++..|.|++||++|.|+.+.+++++..
T Consensus 548 ~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~ 612 (968)
T 3dmq_A 548 AWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPY 612 (968)
T ss_dssp HHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEE
T ss_pred HHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEec
Confidence 9999998 99999999999999999999999999999999999999999999998866555433
No 49
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=2.8e-38 Score=295.02 Aligned_cols=277 Identities=18% Similarity=0.191 Sum_probs=200.4
Q ss_pred CCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHH-cCCceEEcCCCCCchh
Q 037567 13 VFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQ-RGINAEFLGSAQTDSS 91 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~-~~~~~~~~~~~~~~~~ 91 (374)
.++++|.++++.+.+++++++.||||||||.++.++++.++.+++|++|+++|+.|+.+.+.+ ++.......+...
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~--- 293 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT--- 293 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE---
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHCCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe---
Confidence 466777777777777889999999999999999999888888999999999999999988764 4555554444321
Q ss_pred hhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcC-CCC--eeEEE
Q 037567 92 VQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLL-GVP--FVALT 168 (374)
Q Consensus 92 ~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~i~~S 168 (374)
.....+|+|+||++|.. . ..+.+.++++||+||+|.+.. + +.. .+..+....+ ..+ +++||
T Consensus 294 -----~~~~~~IlV~TPGrLl~---~--~~l~l~~l~~lVlDEAH~l~~-~--~~~---~l~~Il~~l~~~~~~llil~S 357 (666)
T 3o8b_A 294 -----ITTGAPVTYSTYGKFLA---D--GGCSGGAYDIIICDECHSTDS-T--TIL---GIGTVLDQAETAGARLVVLAT 357 (666)
T ss_dssp -----ECCCCSEEEEEHHHHHH---T--TSCCTTSCSEEEETTTTCCSH-H--HHH---HHHHHHHHTTTTTCSEEEEEE
T ss_pred -----ccCCCCEEEECcHHHHh---C--CCcccCcccEEEEccchhcCc-c--HHH---HHHHHHHhhhhcCCceEEEEC
Confidence 34557999999998731 1 233456789999999987642 2 222 2333333333 223 68889
Q ss_pred eecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEEEeecCCcchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHH
Q 037567 169 ATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKAL 248 (374)
Q Consensus 169 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l 248 (374)
||++.... ...+.+.......... ...... ... + ....++++||||++++.++.+++.|
T Consensus 358 AT~~~~i~--------~~~p~i~~v~~~~~~~---i~~~~~-~~~--------l-~~~~~~~vLVFv~Tr~~ae~la~~L 416 (666)
T 3o8b_A 358 ATPPGSVT--------VPHPNIEEVALSNTGE---IPFYGK-AIP--------I-EAIRGGRHLIFCHSKKKCDELAAKL 416 (666)
T ss_dssp SSCTTCCC--------CCCTTEEEEECBSCSS---EEETTE-EEC--------G-GGSSSSEEEEECSCHHHHHHHHHHH
T ss_pred CCCCcccc--------cCCcceEEEeecccch---hHHHHh-hhh--------h-hhccCCcEEEEeCCHHHHHHHHHHH
Confidence 99987421 1221111111110000 000000 000 1 1126789999999999999999999
Q ss_pred HHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEE----------EEC-----------CCC
Q 037567 249 KQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI----------HYG-----------CPK 307 (374)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi----------~~~-----------~p~ 307 (374)
++.++.+..+||+++.++ |.++..+|||||+++++|+|+| +++|| +++ .|.
T Consensus 417 ~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~ 488 (666)
T 3o8b_A 417 SGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQ 488 (666)
T ss_dssp HTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEEC
T ss_pred HhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcC
Confidence 999999999999998875 4556669999999999999997 99988 455 799
Q ss_pred ChhHHHHhhccCCCCCCceEEEEEeeccCCCc
Q 037567 308 TLESYYQESGRCGRDGIASVCWLYYARSNFAK 339 (374)
Q Consensus 308 s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~ 339 (374)
+..+|+||+||+|| +..|. +.++.+.+...
T Consensus 489 s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 489 DAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp BHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred CHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 99999999999999 88999 99998887665
No 50
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=2.4e-36 Score=281.96 Aligned_cols=304 Identities=16% Similarity=0.124 Sum_probs=207.8
Q ss_pred CCchhHHHHHHHHH----cCCCEEEEccCCCCchhhhhccccc-----cCCcEEEEcchHHHHHHHHHHHHHcC--CceE
Q 037567 13 VFRPYQKDVIQRII----EKRDCLVVMATGSGKSLCYQLPPLV-----TGKTALVVSPLISLMQDQVMSLKQRG--INAE 81 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~----~~~~~l~~a~tGsGKT~~~~l~~~~-----~~~~~lil~P~~~l~~q~~~~~~~~~--~~~~ 81 (374)
.|+|||.++++.+. .+.++++.++||+|||+.++..+.. ...++||+||+ +|+.||.+++.++. ..+.
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~-~l~~qw~~e~~~~~~~~~v~ 115 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPL-SVLKNWEEELSKFAPHLRFA 115 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECS-TTHHHHHHHHHHHCTTSCEE
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccH-HHHHHHHHHHHHHCCCceEE
Confidence 59999999998763 4788999999999999876544332 24789999995 69999999999884 3444
Q ss_pred EcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCC
Q 037567 82 FLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLG 161 (374)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (374)
+..+.... .....++|+|+||+.+.... .+....+++||+||||++.+.+.. .......++.
T Consensus 116 ~~~g~~~~------~~~~~~~ivi~t~~~l~~~~-----~l~~~~~~~vIvDEaH~~kn~~~~-------~~~~l~~l~~ 177 (500)
T 1z63_A 116 VFHEDRSK------IKLEDYDIILTTYAVLLRDT-----RLKEVEWKYIVIDEAQNIKNPQTK-------IFKAVKELKS 177 (500)
T ss_dssp ECSSSTTS------CCGGGSSEEEEEHHHHTTCH-----HHHTCCEEEEEEETGGGGSCTTSH-------HHHHHHTSCE
T ss_pred EEecCchh------ccccCCcEEEeeHHHHhccc-----hhcCCCcCEEEEeCccccCCHhHH-------HHHHHHhhcc
Confidence 44433211 12245789999999986542 244567899999999999764421 2223333456
Q ss_pred CCeeEEEeecCcccHHHHHHhcCC-----------------------------------CCCeEEEec------cCCCce
Q 037567 162 VPFVALTATATEKVRIDIINSLKL-----------------------------------KNPYVTIAS------FDRKNL 200 (374)
Q Consensus 162 ~~~i~~SaT~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~------~~~~~~ 200 (374)
.+++++||||..+...++...+.. .+....... ...+..
T Consensus 178 ~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~ 257 (500)
T 1z63_A 178 KYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDK 257 (500)
T ss_dssp EEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSE
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCC
Confidence 678999999977654433221110 000000000 011111
Q ss_pred eEEEEeecCC--------------------------------------------------------cchHHHHHHHHHHh
Q 037567 201 FYGVKVINRG--------------------------------------------------------QSFVDELVQEILKS 224 (374)
Q Consensus 201 ~~~~~~~~~~--------------------------------------------------------~~~~~~~~~~~~~~ 224 (374)
.......... ......+...+.+.
T Consensus 258 ~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~ 337 (500)
T 1z63_A 258 IETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEA 337 (500)
T ss_dssp EEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHH
Confidence 1111110000 01111122222233
Q ss_pred hcCCCcEEEEecchhHHHHHHHHHHHc-CCceeeeecCCChHHHHHHHHhhhcC-Cee-EEEEeccccccccccCccEEE
Q 037567 225 VAGAGSIIVYCMTIKDVEEISKALKQL-GVKAGTYHGQMGSKAREEAHRLFIRD-EIR-VMVATMAFGMGIDKPDVRHVI 301 (374)
Q Consensus 225 ~~~~~~~lVf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-ilv~t~~~~~G~d~~~~~~vi 301 (374)
...+.++|||+++...++.+++.|.+. +..+..+||+++..+|..+++.|++| +.. +|++|.++++|+|+|.+++||
T Consensus 338 ~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi 417 (500)
T 1z63_A 338 LDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVI 417 (500)
T ss_dssp HTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEE
T ss_pred HccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEE
Confidence 346889999999999999999999885 99999999999999999999999998 454 788999999999999999999
Q ss_pred EECCCCChhHHHHhhccCCCCCCceEE--EEEeecc
Q 037567 302 HYGCPKTLESYYQESGRCGRDGIASVC--WLYYARS 335 (374)
Q Consensus 302 ~~~~p~s~~~~~Q~~GR~~R~~~~g~~--~~~~~~~ 335 (374)
++++|+|+..+.|++||++|.|+.+.+ +.++..+
T Consensus 418 ~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 418 HFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp ESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred EeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 999999999999999999999987655 4444443
No 51
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=2.1e-37 Score=284.19 Aligned_cols=272 Identities=18% Similarity=0.134 Sum_probs=181.8
Q ss_pred HHHcCCCEEEEccCCCCchhhhhccccc----cCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhhhhhhhcC
Q 037567 24 RIIEKRDCLVVMATGSGKSLCYQLPPLV----TGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETG 99 (374)
Q Consensus 24 ~~~~~~~~l~~a~tGsGKT~~~~l~~~~----~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (374)
.+.+++++++.+|||||||++|+++++. .+.+++|++|+++|+.|+.+.+... .+.......... ...
T Consensus 17 ~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~--~v~~~~~~~~~~------~t~ 88 (459)
T 2z83_A 17 MLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRGL--PVRYQTSAVQRE------HQG 88 (459)
T ss_dssp GGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTTTS--CEEECC--------------C
T ss_pred HHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhcCc--eEeEEecccccC------CCC
Confidence 3455788999999999999999888775 5789999999999999999998733 222221111100 011
Q ss_pred CeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCeeEEEeecCcccHHHH
Q 037567 100 YFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179 (374)
Q Consensus 100 ~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~ 179 (374)
...+.++|.+.+.. .......+.++++||+||+|.+... .......+.. ....++.++++||||++.....
T Consensus 89 ~~~i~~~~~~~l~~---~l~~~~~l~~~~~iViDEaH~~~~~---~~~~~~~~~~-~~~~~~~~~il~SAT~~~~~~~-- 159 (459)
T 2z83_A 89 NEIVDVMCHATLTH---RLMSPNRVPNYNLFVMDEAHFTDPA---SIAARGYIAT-KVELGEAAAIFMTATPPGTTDP-- 159 (459)
T ss_dssp CCSEEEEEHHHHHH---HHHSCC-CCCCSEEEESSTTCCSHH---HHHHHHHHHH-HHHTTSCEEEEECSSCTTCCCS--
T ss_pred CcEEEEEchHHHHH---HhhccccccCCcEEEEECCccCCch---hhHHHHHHHH-HhccCCccEEEEEcCCCcchhh--
Confidence 12234444443221 1111123568899999999984210 0111111222 2223578999999999875421
Q ss_pred HHhcCCCCCeEEEeccCCCceeEEEEeecCCcchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeee
Q 037567 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYH 259 (374)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~ 259 (374)
......+....... ............+ .. .++++||||+++..++.+++.|++.++.+..+|
T Consensus 160 --~~~~~~pi~~~~~~----------~~~~~~~~~~~~l----~~--~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh 221 (459)
T 2z83_A 160 --FPDSNAPIHDLQDE----------IPDRAWSSGYEWI----TE--YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLN 221 (459)
T ss_dssp --SCCCSSCEEEEECC----------CCSSCCSSCCHHH----HH--CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEES
T ss_pred --hccCCCCeEEeccc----------CCcchhHHHHHHH----Hh--cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecC
Confidence 11112222211110 0001111111222 22 378999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCccEEEE--------------------ECCCCChhHHHHhhccC
Q 037567 260 GQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIH--------------------YGCPKTLESYYQESGRC 319 (374)
Q Consensus 260 ~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~vi~--------------------~~~p~s~~~~~Q~~GR~ 319 (374)
++ +|..+++.|.+|+.+|||||+++++|+|+|+ ++||+ ++.|.|..+|+||+||+
T Consensus 222 ~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRa 296 (459)
T 2z83_A 222 RK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRV 296 (459)
T ss_dssp TT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTS
T ss_pred HH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhcccc
Confidence 85 6778899999999999999999999999999 99998 56999999999999999
Q ss_pred CCCCC-ceEEEEEeecc
Q 037567 320 GRDGI-ASVCWLYYARS 335 (374)
Q Consensus 320 ~R~~~-~g~~~~~~~~~ 335 (374)
||.|. +|.+++++.+.
T Consensus 297 GR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 297 GRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp SCCTTCCCEEEEECSCC
T ss_pred CCCCCCCCeEEEEEccc
Confidence 99997 89999998876
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=3.7e-36 Score=273.70 Aligned_cols=266 Identities=15% Similarity=0.150 Sum_probs=176.7
Q ss_pred cCCCEEEEccCCCCchhhhhcccc----ccCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhhhhhhhcCCee
Q 037567 27 EKRDCLVVMATGSGKSLCYQLPPL----VTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQ 102 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~~l~~~----~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (374)
+++++++.+|||||||++|+++++ ..+.+++|++||++|+.|+.+.+. +..+....+.... .......
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~--~~~v~~~~~~~~~------~~~~~~~ 72 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR--GEPIRYMTPAVQS------ERTGNEI 72 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT--TSCEEEC---------------CCCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC--CCeEEEEecCccc------cCCCCce
Confidence 367899999999999999877766 357899999999999999998887 4444443332111 0111122
Q ss_pred EEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCeeEEEeecCcccHHHHHHh
Q 037567 103 LLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINS 182 (374)
Q Consensus 103 i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~ 182 (374)
+.+.|.+.+.. .......+.++++||+||+|++... .......+.... ..++.++++||||+++.... .
T Consensus 73 ~~~~~~~~l~~---~l~~~~~~~~l~~vViDEaH~~~~~---~~~~~~~l~~~~-~~~~~~~l~~SAT~~~~~~~----~ 141 (431)
T 2v6i_A 73 VDFMCHSTFTM---KLLQGVRVPNYNLYIMDEAHFLDPA---SVAARGYIETRV-SMGDAGAIFMTATPPGTTEA----F 141 (431)
T ss_dssp EEEEEHHHHHH---HHHHTCCCCCCSEEEEESTTCCSHH---HHHHHHHHHHHH-HTTSCEEEEEESSCTTCCCS----S
T ss_pred EEEEchHHHHH---HHhcCccccCCCEEEEeCCccCCcc---HHHHHHHHHHHh-hCCCCcEEEEeCCCCcchhh----h
Confidence 33444443311 1112222578899999999997321 111122232222 23478999999999975321 1
Q ss_pred cCCCCCeEEEeccCCCceeEEEEeecCCcchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCC
Q 037567 183 LKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQM 262 (374)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 262 (374)
.....+...... .......... +. .+.. .++++||||++++.++.+++.|++.+..+..+||+
T Consensus 142 ~~~~~~i~~~~~----------~~~~~~~~~~---~~-~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~- 204 (431)
T 2v6i_A 142 PPSNSPIIDEET----------RIPDKAWNSG---YE-WITE--FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK- 204 (431)
T ss_dssp CCCSSCCEEEEC----------CCCSSCCSSC---CH-HHHS--CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT-
T ss_pred cCCCCceeeccc----------cCCHHHHHHH---HH-HHHc--CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc-
Confidence 111111111110 0001111111 11 1222 36799999999999999999999999999999987
Q ss_pred ChHHHHHHHHhhhcCCeeEEEEeccccccccccCccE-----------------EEEECCCCChhHHHHhhccCCCCCCc
Q 037567 263 GSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH-----------------VIHYGCPKTLESYYQESGRCGRDGIA 325 (374)
Q Consensus 263 ~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~~~-----------------vi~~~~p~s~~~~~Q~~GR~~R~~~~ 325 (374)
+|.++++.|.+|+.+|||||+++++|+|+| +.+ +|+++.|.+..+|.||+||+||.|..
T Consensus 205 ---~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~ 280 (431)
T 2v6i_A 205 ---TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEK 280 (431)
T ss_dssp ---THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred ---cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCC
Confidence 678899999999999999999999999999 544 57788999999999999999999854
Q ss_pred -eEEEEEe
Q 037567 326 -SVCWLYY 332 (374)
Q Consensus 326 -g~~~~~~ 332 (374)
|.++++.
T Consensus 281 ~~~~~~~~ 288 (431)
T 2v6i_A 281 LGDIYAYS 288 (431)
T ss_dssp CCCEEEEC
T ss_pred CCeEEEEc
Confidence 4444444
No 53
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=8.3e-37 Score=294.74 Aligned_cols=314 Identities=14% Similarity=0.152 Sum_probs=220.0
Q ss_pred HHHhHcCCCCCchhHHHHHHHHHc-CCCEEEEccCCCCchhhhhccccc----c--CCcEEEEcchHHHHHHHHHHHHH-
Q 037567 4 TLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLV----T--GKTALVVSPLISLMQDQVMSLKQ- 75 (374)
Q Consensus 4 ~l~~~~~~~~~~~~Q~~~~~~~~~-~~~~l~~a~tGsGKT~~~~l~~~~----~--~~~~lil~P~~~l~~q~~~~~~~- 75 (374)
.++. .+ ..|.+.|.++++.++. ++++++.||||||||+..-..++. . +.++++++|+++|+.|+.+.+..
T Consensus 86 ~l~~-r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~ 163 (773)
T 2xau_A 86 ILKI-RR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEE 163 (773)
T ss_dssp HHHH-HT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHH-hh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHH
Confidence 4444 34 5688889999887776 567899999999999832111211 2 55699999999999999887754
Q ss_pred cCCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccch-hhcccCcchHHHHHHHH
Q 037567 76 RGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHC-ISEWGHDFRLEYKQLDK 154 (374)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~-~~~~~~~~~~~~~~~~~ 154 (374)
++..+....+.... .........+|+++||+.+..... ....+.++++||+||+|. ..+ .......+..
T Consensus 164 ~~~~v~~~vG~~i~---~~~~~~~~~~I~v~T~G~l~r~l~---~~~~l~~~~~lIlDEah~R~ld----~d~~~~~l~~ 233 (773)
T 2xau_A 164 MDVKLGEEVGYSIR---FENKTSNKTILKYMTDGMLLREAM---EDHDLSRYSCIILDEAHERTLA----TDILMGLLKQ 233 (773)
T ss_dssp TTCCBTTTEEEEET---TEEECCTTCSEEEEEHHHHHHHHH---HSTTCTTEEEEEECSGGGCCHH----HHHHHHHHHH
T ss_pred hCCchhheecceec---cccccCCCCCEEEECHHHHHHHHh---hCccccCCCEEEecCccccccc----hHHHHHHHHH
Confidence 33332211111100 011122457899999998765432 234567899999999995 322 1222344555
Q ss_pred HHHhcCCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEEEeecC-CcchHHHHHHHHHHhh--cCCCcE
Q 037567 155 LRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINR-GQSFVDELVQEILKSV--AGAGSI 231 (374)
Q Consensus 155 ~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~ 231 (374)
+....++.++++||||++.. .+..+++ ..+.+...... .. ........ ........+..+.... ..++++
T Consensus 234 l~~~~~~~~iIl~SAT~~~~---~l~~~~~-~~~vi~v~gr~-~p--v~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~i 306 (773)
T 2xau_A 234 VVKRRPDLKIIIMSATLDAE---KFQRYFN-DAPLLAVPGRT-YP--VELYYTPEFQRDYLDSAIRTVLQIHATEEAGDI 306 (773)
T ss_dssp HHHHCTTCEEEEEESCSCCH---HHHHHTT-SCCEEECCCCC-CC--EEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEE
T ss_pred HHHhCCCceEEEEeccccHH---HHHHHhc-CCCcccccCcc-cc--eEEEEecCCchhHHHHHHHHHHHHHHhcCCCCE
Confidence 55666688999999999653 3444443 22332222211 11 12222221 2223333444433321 257899
Q ss_pred EEEecchhHHHHHHHHHHH-----------cCCceeeeecCCChHHHHHHHHhhh-----cCCeeEEEEecccccccccc
Q 037567 232 IVYCMTIKDVEEISKALKQ-----------LGVKAGTYHGQMGSKAREEAHRLFI-----RDEIRVMVATMAFGMGIDKP 295 (374)
Q Consensus 232 lVf~~~~~~~~~l~~~l~~-----------~~~~~~~~~~~~~~~~r~~~~~~f~-----~g~~~ilv~t~~~~~G~d~~ 295 (374)
||||+++.+++.+++.|.+ .++.+..+||+++.++|..+++.|. +|..+|||||+++++|+|+|
T Consensus 307 LVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp 386 (773)
T 2xau_A 307 LLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTID 386 (773)
T ss_dssp EEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCT
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcC
Confidence 9999999999999999985 4678999999999999999999999 99999999999999999999
Q ss_pred CccEEEEECC------------------CCChhHHHHhhccCCCCCCceEEEEEeeccCC
Q 037567 296 DVRHVIHYGC------------------PKTLESYYQESGRCGRDGIASVCWLYYARSNF 337 (374)
Q Consensus 296 ~~~~vi~~~~------------------p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 337 (374)
++++||+++. |.|..+|.||+||+||. .+|.|+.++++.++
T Consensus 387 ~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 387 GIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp TEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred CeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 9999999887 88999999999999999 79999999998766
No 54
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=2.1e-34 Score=272.20 Aligned_cols=280 Identities=16% Similarity=0.200 Sum_probs=196.0
Q ss_pred hHHHHHHHHHcCCCEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhhhhhh
Q 037567 17 YQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKA 96 (374)
Q Consensus 17 ~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (374)
.|.......+++++++++||||||||..++.. +...+..+|++|+++|+.|+++.+...|..+....++..... ..
T Consensus 144 ~~~~p~ar~l~rk~vlv~apTGSGKT~~al~~-l~~~~~gl~l~PtR~LA~Qi~~~l~~~g~~v~lltG~~~~iv---~T 219 (677)
T 3rc3_A 144 PNWYPDARAMQRKIIFHSGPTNSGKTYHAIQK-YFSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERVTV---QP 219 (677)
T ss_dssp GGGCHHHHTSCCEEEEEECCTTSSHHHHHHHH-HHHSSSEEEEESSHHHHHHHHHHHHHTTCCEEEECSSCEECC---ST
T ss_pred hhhCHHHHhcCCCEEEEEcCCCCCHHHHHHHH-HHhcCCeEEEeCHHHHHHHHHHHHHhcCCcEEEEECCeeEEe---cC
Confidence 33333445567889999999999999844433 333466799999999999999999999988887766533311 00
Q ss_pred hcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhc--CCCCeeEEEeecCcc
Q 037567 97 ETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFL--LGVPFVALTATATEK 174 (374)
Q Consensus 97 ~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~SaT~~~~ 174 (374)
.....+++++|++.+.. ...++++|+||+|.+.+.+.. ..+....... ...+++++|||.+
T Consensus 220 pGr~~~il~~T~e~~~l----------~~~v~lvVIDEaH~l~d~~~g-----~~~~~~l~~l~~~~i~il~~SAT~~-- 282 (677)
T 3rc3_A 220 NGKQASHVSCTVEMCSV----------TTPYEVAVIDEIQMIRDPARG-----WAWTRALLGLCAEEVHLCGEPAAID-- 282 (677)
T ss_dssp TCCCCSEEEEEGGGCCS----------SSCEEEEEECSGGGGGCTTTH-----HHHHHHHHHCCEEEEEEEECGGGHH--
T ss_pred CCcccceeEecHhHhhh----------cccCCEEEEecceecCCccch-----HHHHHHHHccCccceEEEeccchHH--
Confidence 11225788888876542 356799999999999765443 2233333322 3567889999842
Q ss_pred cHHHHHHhcCCCCCeEEEeccCCCceeEEEEeecCCcchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCc
Q 037567 175 VRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVK 254 (374)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~ 254 (374)
....+....+. .... ....+.... . ....... .+.. .....+|||++++.++.+++.|.+.+..
T Consensus 283 ~i~~l~~~~~~--~~~v-~~~~r~~~l-~--~~~~~l~--------~l~~--~~~g~iIf~~s~~~ie~la~~L~~~g~~ 346 (677)
T 3rc3_A 283 LVMELMYTTGE--EVEV-RDYKRLTPI-S--VLDHALE--------SLDN--LRPGDCIVCFSKNDIYSVSRQIEIRGLE 346 (677)
T ss_dssp HHHHHHHHHTC--CEEE-EECCCSSCE-E--ECSSCCC--------SGGG--CCTTEEEECSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhcCC--ceEE-EEeeecchH-H--HHHHHHH--------HHHh--cCCCCEEEEcCHHHHHHHHHHHHhcCCC
Confidence 22233333321 1111 111111100 0 0001000 0111 1334588899999999999999999999
Q ss_pred eeeeecCCChHHHHHHHHhhhc--CCeeEEEEeccccccccccCccEEEEECC--------------CCChhHHHHhhcc
Q 037567 255 AGTYHGQMGSKAREEAHRLFIR--DEIRVMVATMAFGMGIDKPDVRHVIHYGC--------------PKTLESYYQESGR 318 (374)
Q Consensus 255 ~~~~~~~~~~~~r~~~~~~f~~--g~~~ilv~t~~~~~G~d~~~~~~vi~~~~--------------p~s~~~~~Q~~GR 318 (374)
+..+||+++.++|.++++.|++ |..+|||||+++++|+|+ ++++||+++. |.+..+|.||+||
T Consensus 347 v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GR 425 (677)
T 3rc3_A 347 SAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGR 425 (677)
T ss_dssp CEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTT
T ss_pred eeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcC
Confidence 9999999999999999999999 889999999999999999 8999999998 7799999999999
Q ss_pred CCCCCCc---eEEEEEeec
Q 037567 319 CGRDGIA---SVCWLYYAR 334 (374)
Q Consensus 319 ~~R~~~~---g~~~~~~~~ 334 (374)
+||.|.. |.|+.++..
T Consensus 426 AGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 426 AGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp BTCTTSSCSSEEEEESSTT
T ss_pred CCCCCCCCCCEEEEEEecc
Confidence 9999864 777766544
No 55
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-34 Score=279.35 Aligned_cols=311 Identities=15% Similarity=0.148 Sum_probs=214.7
Q ss_pred CCchhHHHHHHHHH----cCCCEEEEccCCCCchhhhhcccc------ccCCcEEEEcchHHHHHHHHHHHHHcC--Cce
Q 037567 13 VFRPYQKDVIQRII----EKRDCLVVMATGSGKSLCYQLPPL------VTGKTALVVSPLISLMQDQVMSLKQRG--INA 80 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~----~~~~~l~~a~tGsGKT~~~~l~~~------~~~~~~lil~P~~~l~~q~~~~~~~~~--~~~ 80 (374)
+|+|||.+++..+. .+.++++..+||+|||+.++..+. ....++||||| .+++.||.+++.++. ..+
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~v 314 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDLNC 314 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTCCE
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCceE
Confidence 69999999998776 688999999999999977654432 23678999999 578999999999885 344
Q ss_pred EEcCCCCCchhhhhh-----------hhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHH
Q 037567 81 EFLGSAQTDSSVQTK-----------AETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEY 149 (374)
Q Consensus 81 ~~~~~~~~~~~~~~~-----------~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~ 149 (374)
.+..+.......... .....++|+|+|++.+... ...+....+++||+||||++.+.+.
T Consensus 315 ~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~----~~~l~~~~w~~vIvDEaH~lkn~~s------ 384 (800)
T 3mwy_W 315 ICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKD----RAELGSIKWQFMAVDEAHRLKNAES------ 384 (800)
T ss_dssp EECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHT----HHHHHTSEEEEEEETTGGGGCCSSS------
T ss_pred EEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhh----HHHHhcCCcceeehhhhhhhcCchh------
Confidence 444443322221111 2234678999999988543 2334445789999999999976443
Q ss_pred HHHHHHHHhcCCCCeeEEEeecCcccHHHHHHhcCCCCC-------------------------------eEEEe-cc--
Q 037567 150 KQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNP-------------------------------YVTIA-SF-- 195 (374)
Q Consensus 150 ~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~-------------------------------~~~~~-~~-- 195 (374)
........+....++++||||..+...++...+..-.+ .+... ..
T Consensus 385 -~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv 463 (800)
T 3mwy_W 385 -SLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDV 463 (800)
T ss_dssp -HHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGG
T ss_pred -HHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhh
Confidence 22333344456678999999966544433332111000 00000 00
Q ss_pred --CCCceeEEEEeecCC---------------------------------------------------------------
Q 037567 196 --DRKNLFYGVKVINRG--------------------------------------------------------------- 210 (374)
Q Consensus 196 --~~~~~~~~~~~~~~~--------------------------------------------------------------- 210 (374)
..+............
T Consensus 464 ~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~ 543 (800)
T 3mwy_W 464 EKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMT 543 (800)
T ss_dssp TTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CC
T ss_pred hhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhccccccc
Confidence 000000000000000
Q ss_pred ----------cchHHHHHHHHHHhh-cCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCe
Q 037567 211 ----------QSFVDELVQEILKSV-AGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEI 279 (374)
Q Consensus 211 ----------~~~~~~~~~~~~~~~-~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 279 (374)
.......+..++... ..+.++|||+.....++.+...|...|+++..+||+++..+|+.+++.|+.+..
T Consensus 544 ~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~ 623 (800)
T 3mwy_W 544 RENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDS 623 (800)
T ss_dssp SHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTC
T ss_pred HHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCC
Confidence 011223334444433 457799999999999999999999999999999999999999999999998654
Q ss_pred ---eEEEEeccccccccccCccEEEEECCCCChhHHHHhhccCCCCCCceEE--EEEeecc
Q 037567 280 ---RVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVC--WLYYARS 335 (374)
Q Consensus 280 ---~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~--~~~~~~~ 335 (374)
.+|++|.++++|+|++.+++||++++|+|+..+.|++||+.|.|+...| +.++...
T Consensus 624 ~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 624 NDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp SCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred CceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 4899999999999999999999999999999999999999999987655 4444443
No 56
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.8e-33 Score=264.68 Aligned_cols=311 Identities=16% Similarity=0.155 Sum_probs=206.9
Q ss_pred CCchhHHHHHHHHH---------cCCCEEEEccCCCCchhhhhccccc---c-------CCcEEEEcchHHHHHHHHHHH
Q 037567 13 VFRPYQKDVIQRII---------EKRDCLVVMATGSGKSLCYQLPPLV---T-------GKTALVVSPLISLMQDQVMSL 73 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~---------~~~~~l~~a~tGsGKT~~~~l~~~~---~-------~~~~lil~P~~~l~~q~~~~~ 73 (374)
.|+|||.+++..++ .+.++++..+||+|||+.++..+.. . ..++|||+|+ +|+.||.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 69999999999875 3456899999999999776544321 1 3469999998 8999999999
Q ss_pred HHcC---CceEEcCCCCCchhh--hhhhh-----cCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccC
Q 037567 74 KQRG---INAEFLGSAQTDSSV--QTKAE-----TGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGH 143 (374)
Q Consensus 74 ~~~~---~~~~~~~~~~~~~~~--~~~~~-----~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~ 143 (374)
.++. .....+.++...... ..... ...++|+|+|++.+.... ..+....+++||+||+|++.+...
T Consensus 134 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~----~~l~~~~~~~vI~DEaH~ikn~~~ 209 (644)
T 1z3i_X 134 GKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA----EVLHKGKVGLVICDEGHRLKNSDN 209 (644)
T ss_dssp HHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT----TTTTTSCCCEEEETTGGGCCTTCH
T ss_pred HHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH----HHhhcCCccEEEEECceecCChhh
Confidence 9873 223333332211110 01100 124789999999874321 122335789999999999976432
Q ss_pred cchHHHHHHHHHHHhcCCCCeeEEEeecCcccHHHHHHh------------------c----------------------
Q 037567 144 DFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINS------------------L---------------------- 183 (374)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~------------------~---------------------- 183 (374)
........+...+++++||||..+...++... +
T Consensus 210 -------~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~ 282 (644)
T 1z3i_X 210 -------QTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQ 282 (644)
T ss_dssp -------HHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHH
T ss_pred -------HHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHH
Confidence 22233333456789999999976642211110 0
Q ss_pred -----------------------CCCCCeEEEeccCCCc----eeE-----------------EE---------------
Q 037567 184 -----------------------KLKNPYVTIASFDRKN----LFY-----------------GV--------------- 204 (374)
Q Consensus 184 -----------------------~~~~~~~~~~~~~~~~----~~~-----------------~~--------------- 204 (374)
.+++............ .+. ..
T Consensus 283 ~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~h 362 (644)
T 1z3i_X 283 KLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNH 362 (644)
T ss_dssp HHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCC
Confidence 0000000000000000 000 00
Q ss_pred ----------------------------EeecCCcchHHHHHHHHHHhh--cCCCcEEEEecchhHHHHHHHHHHHcCCc
Q 037567 205 ----------------------------KVINRGQSFVDELVQEILKSV--AGAGSIIVYCMTIKDVEEISKALKQLGVK 254 (374)
Q Consensus 205 ----------------------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~lVf~~~~~~~~~l~~~l~~~~~~ 254 (374)
.............+..++... ..+.++|||++....++.+.+.|...|+.
T Consensus 363 p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~ 442 (644)
T 1z3i_X 363 PALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYL 442 (644)
T ss_dssp THHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCC
Confidence 000000011223344444433 25789999999999999999999999999
Q ss_pred eeeeecCCChHHHHHHHHhhhcCCe---eEEEEeccccccccccCccEEEEECCCCChhHHHHhhccCCCCCCceEEE--
Q 037567 255 AGTYHGQMGSKAREEAHRLFIRDEI---RVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCW-- 329 (374)
Q Consensus 255 ~~~~~~~~~~~~r~~~~~~f~~g~~---~ilv~t~~~~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~-- 329 (374)
+..+||+++.++|+.+++.|++|+. .+|++|.++++|+|++.+++||++++|+|+..+.|++||++|.|+...+.
T Consensus 443 ~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~ 522 (644)
T 1z3i_X 443 YVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIY 522 (644)
T ss_dssp EEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEE
T ss_pred EEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEE
Confidence 9999999999999999999999865 48899999999999999999999999999999999999999999876544
Q ss_pred EEeecc
Q 037567 330 LYYARS 335 (374)
Q Consensus 330 ~~~~~~ 335 (374)
.++...
T Consensus 523 ~lv~~~ 528 (644)
T 1z3i_X 523 RLLSTG 528 (644)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 444443
No 57
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=1.3e-33 Score=277.39 Aligned_cols=309 Identities=14% Similarity=0.107 Sum_probs=201.5
Q ss_pred CCchhHHHHHHHHHc--------------CCCEEEEccCCCCchhhhhcccc--c---cCCcEEEEcchHHHHHHHHHHH
Q 037567 13 VFRPYQKDVIQRIIE--------------KRDCLVVMATGSGKSLCYQLPPL--V---TGKTALVVSPLISLMQDQVMSL 73 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~--------------~~~~l~~a~tGsGKT~~~~l~~~--~---~~~~~lil~P~~~l~~q~~~~~ 73 (374)
.|||+|.+|++.+++ +++++++++||||||++++..+. . ...++||++|+++|+.||.+.+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~f 350 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKEY 350 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHHHH
Confidence 599999999999875 36899999999999988633221 1 1368999999999999999999
Q ss_pred HHcCCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHH
Q 037567 74 KQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLD 153 (374)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~ 153 (374)
..++... +.+...............++|+|+||+++............+..+.+||+||||+... + ....
T Consensus 351 ~~f~~~~--v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~-~-------~~~~ 420 (1038)
T 2w00_A 351 QRFSPDS--VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF-G-------EAQK 420 (1038)
T ss_dssp HTTSTTC--SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH-H-------HHHH
T ss_pred HHhcccc--cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc-h-------HHHH
Confidence 9886431 2222222222222334568999999999865432210001234678999999999753 1 2234
Q ss_pred HHHHhcCCCCeeEEEeecCcccH----HHHHHhcCC----------------CCCeEEEeccCCCcee-----EE-----
Q 037567 154 KLRTFLLGVPFVALTATATEKVR----IDIINSLKL----------------KNPYVTIASFDRKNLF-----YG----- 203 (374)
Q Consensus 154 ~~~~~~~~~~~i~~SaT~~~~~~----~~~~~~~~~----------------~~~~~~~~~~~~~~~~-----~~----- 203 (374)
.+...+++.++++|||||..... ......++- .+..+...... +.+. ..
T Consensus 421 ~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~-~~~~~~~~e~d~~~~~ 499 (1038)
T 2w00_A 421 NLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVR-PQFKSLETETDEKKLS 499 (1038)
T ss_dssp HHHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCC-GGGHHHHTCCCHHHHH
T ss_pred HHHHhCCcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEecc-chhhhccccccHHHHH
Confidence 55666778899999999986431 112222221 11111111000 0000 00
Q ss_pred -EEe--ecCCcchHHHHHHHHHHhhc----------CCCcEEEEecchhHHHHHHHHHHHcC------------Ccee-e
Q 037567 204 -VKV--INRGQSFVDELVQEILKSVA----------GAGSIIVYCMTIKDVEEISKALKQLG------------VKAG-T 257 (374)
Q Consensus 204 -~~~--~~~~~~~~~~~~~~~~~~~~----------~~~~~lVf~~~~~~~~~l~~~l~~~~------------~~~~-~ 257 (374)
... .-........++..++++.. .+.++||||+++..|..+++.|.+.+ .++. .
T Consensus 500 ~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv 579 (1038)
T 2w00_A 500 AAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATI 579 (1038)
T ss_dssp HTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEE
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEE
Confidence 000 00011122333444444321 34689999999999999999998754 4443 4
Q ss_pred eecC----------C----------Ch-----------------------------HHHHHHHHhhhcCCeeEEEEeccc
Q 037567 258 YHGQ----------M----------GS-----------------------------KAREEAHRLFIRDEIRVMVATMAF 288 (374)
Q Consensus 258 ~~~~----------~----------~~-----------------------------~~r~~~~~~f~~g~~~ilv~t~~~ 288 (374)
+|++ + +. ..|..++++|++|+++|||+|+++
T Consensus 580 ~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~l 659 (1038)
T 2w00_A 580 FSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMF 659 (1038)
T ss_dssp CCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTT
T ss_pred EeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchH
Confidence 4442 1 11 137788899999999999999999
Q ss_pred cccccccCccEEEEECCCCChhHHHHhhccCCCCCCc----eEEEEEee
Q 037567 289 GMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIA----SVCWLYYA 333 (374)
Q Consensus 289 ~~G~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~----g~~~~~~~ 333 (374)
.+|+|+|.+ .++.++.|.+...++|++||++|.+.+ |.++.|..
T Consensus 660 ltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 660 LTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp SSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred HhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 999999999 567789999999999999999998754 66666654
No 58
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.97 E-value=2.1e-30 Score=238.88 Aligned_cols=326 Identities=18% Similarity=0.183 Sum_probs=226.0
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc---cCCcEEEEcchHHHHHHHHHHHHH---
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV---TGKTALVVSPLISLMQDQVMSLKQ--- 75 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~---~~~~~lil~P~~~l~~q~~~~~~~--- 75 (374)
.++-++.+|+. |++.|.-+.-.+.+|+ +..+.||+|||+++.+|+.. .+..+.|++|+..||.|-.+++..
T Consensus 65 REAa~R~lg~r-~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G~~vhVvT~ndyLA~rdae~m~~l~~ 141 (822)
T 3jux_A 65 REAARRTLGMR-PFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIGKGVHLVTVNDYLARRDALWMGPVYL 141 (822)
T ss_dssp HHHHHHHTSCC-CCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-CcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcCCceEEEeccHHHHHhHHHHHHHHHH
Confidence 45677888885 8899998888888777 99999999999999888763 588899999999999987777654
Q ss_pred -cCCceEEcCCCCC-----------------------------------------------chhhhhhhhcCCeeEEEEc
Q 037567 76 -RGINAEFLGSAQT-----------------------------------------------DSSVQTKAETGYFQLLFMT 107 (374)
Q Consensus 76 -~~~~~~~~~~~~~-----------------------------------------------~~~~~~~~~~~~~~i~i~T 107 (374)
+|+.+.+...... ............+||+++|
T Consensus 142 ~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYgT 221 (822)
T 3jux_A 142 FLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGT 221 (822)
T ss_dssp HTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEEE
T ss_pred HhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEcc
Confidence 4888877665210 0001111222457999999
Q ss_pred Cccccc-Cchhh----HHHHHhcCccEEEEeccchhh-cc--------c--Ccch-------------------------
Q 037567 108 PEKACI-IPISF----WSKLLKAGVCLFAVDEAHCIS-EW--------G--HDFR------------------------- 146 (374)
Q Consensus 108 ~~~l~~-~~~~~----~~~~~~~~~~~vviDE~h~~~-~~--------~--~~~~------------------------- 146 (374)
..-+.. +++.. ........+.+.||||++.+. +. | ....
T Consensus 222 n~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~ 301 (822)
T 3jux_A 222 NNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKA 301 (822)
T ss_dssp HHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSS
T ss_pred CcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEccc
Confidence 865421 11100 011123557899999999974 10 0 0000
Q ss_pred ----------------------------HHHHHHH-HHH--Hhc------------------------------------
Q 037567 147 ----------------------------LEYKQLD-KLR--TFL------------------------------------ 159 (374)
Q Consensus 147 ----------------------------~~~~~~~-~~~--~~~------------------------------------ 159 (374)
.....+. .+. ..+
T Consensus 302 ~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQa 381 (822)
T 3jux_A 302 RTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQA 381 (822)
T ss_dssp SCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHH
T ss_pred CeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHH
Confidence 0000000 000 000
Q ss_pred --------------------------CCCCeeEEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEE--EeecCCc
Q 037567 160 --------------------------LGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGV--KVINRGQ 211 (374)
Q Consensus 160 --------------------------~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 211 (374)
.-.++.+||||..... ..+...+++. +...+.+.+...... ..+....
T Consensus 382 iEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~-~Ef~~iY~l~---vv~IPtnkp~~R~d~~d~vy~t~~ 457 (822)
T 3jux_A 382 IEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEE-SEFVQVYGME---VVVIPTHKPMIRKDHDDLVFRTQK 457 (822)
T ss_dssp HHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGH-HHHHHHSCCC---EEECCCSSCCCCEECCCEEESSHH
T ss_pred HHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHH-HHHHHHhCCe---EEEECCCCCcceeecCcEEEecHH
Confidence 0013899999998754 3566666644 222233333222222 2344444
Q ss_pred chHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEecccccc
Q 037567 212 SFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMG 291 (374)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G 291 (374)
.....++..+......+.++||||+++..++.+++.|.+.|+++..+||+....++..+...++.| .|+|||+++++|
T Consensus 458 eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRG 535 (822)
T 3jux_A 458 EKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRG 535 (822)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTT
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCC
Confidence 555666666655545688999999999999999999999999999999996655665556666666 699999999999
Q ss_pred cccc--------CccEEEEECCCCChhHHHHhhccCCCCCCceEEEEEeeccC
Q 037567 292 IDKP--------DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN 336 (374)
Q Consensus 292 ~d~~--------~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 336 (374)
+|++ +..+||+++.|.|...|.||+||+||.|.+|.++++++.+|
T Consensus 536 tDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 536 TDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp CCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred cCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 9998 56799999999999999999999999999999999999887
No 59
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=3.6e-28 Score=231.37 Aligned_cols=124 Identities=23% Similarity=0.342 Sum_probs=112.7
Q ss_pred chHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEecccccc
Q 037567 212 SFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMG 291 (374)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G 291 (374)
.....++..+......+.++||||+++..++.+++.|.+.|+.+..+||+++..+|..+++.|..|+.+|||+|+.+++|
T Consensus 423 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~G 502 (664)
T 1c4o_A 423 NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREG 502 (664)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTT
T ss_pred chHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcC
Confidence 34556666666666678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccEEEEECC-----CCChhHHHHhhccCCCCCCceEEEEEeeccC
Q 037567 292 IDKPDVRHVIHYGC-----PKTLESYYQESGRCGRDGIASVCWLYYARSN 336 (374)
Q Consensus 292 ~d~~~~~~vi~~~~-----p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 336 (374)
+|+|++++||+++. |.|...|+||+||+||.+ .|.+++++++.+
T Consensus 503 lDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~ 551 (664)
T 1c4o_A 503 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVS 551 (664)
T ss_dssp CCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCC
T ss_pred ccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCC
Confidence 99999999999997 889999999999999985 788999887654
No 60
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.96 E-value=6.1e-29 Score=207.71 Aligned_cols=167 Identities=19% Similarity=0.276 Sum_probs=125.5
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc------------cCCcEEEEcchHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV------------TGKTALVVSPLISLMQDQ 69 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~------------~~~~~lil~P~~~l~~q~ 69 (374)
.++|.+ +||.+|+|+|.++++.+++++++++.+|||+|||++|+++++. .+.+++|++|+++|+.|+
T Consensus 32 ~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 110 (228)
T 3iuy_A 32 LKSIIR-VGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHV 110 (228)
T ss_dssp HHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHH
T ss_pred HHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHH
Confidence 456777 7999999999999999999999999999999999999887664 467899999999999999
Q ss_pred HHHHHHc---CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcch
Q 037567 70 VMSLKQR---GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFR 146 (374)
Q Consensus 70 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~ 146 (374)
.+.+..+ +.......++........ ....+++|+|+||+++...... ....+.+++++|+||||++.++++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iiv~Tp~~l~~~~~~--~~~~~~~~~~lViDEah~~~~~~~~-- 185 (228)
T 3iuy_A 111 EAECSKYSYKGLKSICIYGGRNRNGQIE-DISKGVDIIIATPGRLNDLQMN--NSVNLRSITYLVIDEADKMLDMEFE-- 185 (228)
T ss_dssp HHHHHHHCCTTCCEEEECC------CHH-HHHSCCSEEEECHHHHHHHHHT--TCCCCTTCCEEEECCHHHHHHTTCH--
T ss_pred HHHHHHhcccCceEEEEECCCChHHHHH-HhcCCCCEEEECHHHHHHHHHc--CCcCcccceEEEEECHHHHhccchH--
Confidence 9999986 455555555443333222 2334589999999998665333 2334567899999999999886643
Q ss_pred HHHHHHHHHHHhc-CCCCeeEEEeecCcccHH
Q 037567 147 LEYKQLDKLRTFL-LGVPFVALTATATEKVRI 177 (374)
Q Consensus 147 ~~~~~~~~~~~~~-~~~~~i~~SaT~~~~~~~ 177 (374)
..+..+.... ++.++++||||+++....
T Consensus 186 ---~~~~~i~~~~~~~~~~l~~SAT~~~~~~~ 214 (228)
T 3iuy_A 186 ---PQIRKILLDVRPDRQTVMTSATWPDTVRQ 214 (228)
T ss_dssp ---HHHHHHHHHSCSSCEEEEEESCCCHHHHH
T ss_pred ---HHHHHHHHhCCcCCeEEEEEeeCCHHHHH
Confidence 3333333433 468899999999987664
No 61
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.95 E-value=9.6e-29 Score=208.21 Aligned_cols=172 Identities=19% Similarity=0.195 Sum_probs=131.6
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc-----------cCCcEEEEcchHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV-----------TGKTALVVSPLISLMQDQV 70 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~-----------~~~~~lil~P~~~l~~q~~ 70 (374)
.+++.+ +||..|+|+|.++++.+++++++++.+|||||||++|+++++. .+.+++|++|+++|+.|+.
T Consensus 41 ~~~l~~-~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~ 119 (242)
T 3fe2_A 41 MDVIAR-QNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQ 119 (242)
T ss_dssp HHHHHT-TTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHH
T ss_pred HHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHH
Confidence 356666 7999999999999999999999999999999999999888764 3677999999999999999
Q ss_pred HHHHHc----CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcch
Q 037567 71 MSLKQR----GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFR 146 (374)
Q Consensus 71 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~ 146 (374)
+.++.+ +.......++......... ...+++|+|+||+++..++.. ....+.+++++|+||||++.++++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~I~v~Tp~~l~~~l~~--~~~~~~~~~~lViDEah~l~~~~~~-- 194 (242)
T 3fe2_A 120 QVAAEYCRACRLKSTCIYGGAPKGPQIRD-LERGVEICIATPGRLIDFLEC--GKTNLRRTTYLVLDEADRMLDMGFE-- 194 (242)
T ss_dssp HHHHHHHHHTTCCEEEECTTSCHHHHHHH-HHHCCSEEEECHHHHHHHHHH--TSCCCTTCCEEEETTHHHHHHTTCH--
T ss_pred HHHHHHHhhcCceEEEEECCCChHHHHHH-hcCCCCEEEECHHHHHHHHHc--CCCCcccccEEEEeCHHHHhhhCcH--
Confidence 888765 6666666665444333222 234579999999998766543 2334577899999999999887643
Q ss_pred HHHHHHHHHHHhc-CCCCeeEEEeecCcccHHHHHHh
Q 037567 147 LEYKQLDKLRTFL-LGVPFVALTATATEKVRIDIINS 182 (374)
Q Consensus 147 ~~~~~~~~~~~~~-~~~~~i~~SaT~~~~~~~~~~~~ 182 (374)
..+..+...+ ++.++++||||+++.........
T Consensus 195 ---~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~ 228 (242)
T 3fe2_A 195 ---PQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDF 228 (242)
T ss_dssp ---HHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHH
T ss_pred ---HHHHHHHHhCCccceEEEEEeecCHHHHHHHHHH
Confidence 3444444544 46789999999988766433333
No 62
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.95 E-value=1.5e-26 Score=220.17 Aligned_cols=124 Identities=23% Similarity=0.345 Sum_probs=113.3
Q ss_pred chHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEecccccc
Q 037567 212 SFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMG 291 (374)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G 291 (374)
.....++..+......+.++||||+++..++.+++.|.+.|+++..+||+++..+|..+++.|+.|+.+|||+|+.+++|
T Consensus 429 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~G 508 (661)
T 2d7d_A 429 GQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREG 508 (661)
T ss_dssp THHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTT
T ss_pred chHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCC
Confidence 34566667776666678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccEEEEECC-----CCChhHHHHhhccCCCCCCceEEEEEeeccC
Q 037567 292 IDKPDVRHVIHYGC-----PKTLESYYQESGRCGRDGIASVCWLYYARSN 336 (374)
Q Consensus 292 ~d~~~~~~vi~~~~-----p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 336 (374)
+|+|++++||+++. |.+...|+||+||+||. ..|.+++++++.+
T Consensus 509 lDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~ 557 (661)
T 2d7d_A 509 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKIT 557 (661)
T ss_dssp CCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCC
T ss_pred cccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCC
Confidence 99999999999997 89999999999999998 6899999987653
No 63
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=1.6e-28 Score=204.08 Aligned_cols=168 Identities=15% Similarity=0.179 Sum_probs=129.5
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcccccc------CCcEEEEcchHHHHHHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVT------GKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~------~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
.++|.+ +||..|+|+|.++++.+++++++++.+|||+|||++|+++++.. ..+++|++|+++|+.|+.+.+++
T Consensus 26 ~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 104 (220)
T 1t6n_A 26 LRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYER 104 (220)
T ss_dssp HHHHHH-TTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHH
T ss_pred HHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHH
Confidence 456766 89999999999999999999999999999999999998877642 45899999999999999999987
Q ss_pred c-----CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcc-cCcchHHH
Q 037567 76 R-----GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEW-GHDFRLEY 149 (374)
Q Consensus 76 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~-~~~~~~~~ 149 (374)
+ +..+....++............+.++|+|+||+++...... ....+.+++++|+||||++.++ +. .
T Consensus 105 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~lViDEah~~~~~~~~--~--- 177 (220)
T 1t6n_A 105 FSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN--KSLNLKHIKHFILDECDKMLEQLDM--R--- 177 (220)
T ss_dssp HTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEESHHHHHSSHHH--H---
T ss_pred HHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHh--CCCCcccCCEEEEcCHHHHhcccCc--H---
Confidence 6 56666666655544444444445679999999998765443 2234567899999999998752 32 1
Q ss_pred HHHHHHHHhcC-CCCeeEEEeecCcccHH
Q 037567 150 KQLDKLRTFLL-GVPFVALTATATEKVRI 177 (374)
Q Consensus 150 ~~~~~~~~~~~-~~~~i~~SaT~~~~~~~ 177 (374)
..+..+....+ +.+++++|||++.....
T Consensus 178 ~~~~~i~~~~~~~~~~i~~SAT~~~~~~~ 206 (220)
T 1t6n_A 178 RDVQEIFRMTPHEKQVMMFSATLSKEIRP 206 (220)
T ss_dssp HHHHHHHHTSCSSSEEEEEESCCCTTTHH
T ss_pred HHHHHHHHhCCCcCeEEEEEeecCHHHHH
Confidence 33444444443 67899999999988764
No 64
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.95 E-value=9.6e-29 Score=208.83 Aligned_cols=177 Identities=24% Similarity=0.280 Sum_probs=127.6
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc-------cCCcEEEEcchHHHHHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV-------TGKTALVVSPLISLMQDQVMSLK 74 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~-------~~~~~lil~P~~~l~~q~~~~~~ 74 (374)
.+++.+ +||..|+|+|.++++.+++++++++.+|||+|||++|+++++. .+.+++|++|+++|+.|+.+.+.
T Consensus 41 ~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 119 (245)
T 3dkp_A 41 LQNILD-AGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELI 119 (245)
T ss_dssp HHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHH
Confidence 345666 7999999999999999999999999999999999999888764 35689999999999999999998
Q ss_pred Hc----CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccC-cchHHH
Q 037567 75 QR----GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGH-DFRLEY 149 (374)
Q Consensus 75 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~-~~~~~~ 149 (374)
.+ +.......++..............++|+|+||+++..++........+.+++++|+||||++.+++. .+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~--- 196 (245)
T 3dkp_A 120 KISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFR--- 196 (245)
T ss_dssp HHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHH---
T ss_pred HHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHH---
Confidence 86 3444433332222222223345678999999999876554322223456789999999999987542 222
Q ss_pred HHHHHHHHhc--CCCCeeEEEeecCcccHHHHHHhc
Q 037567 150 KQLDKLRTFL--LGVPFVALTATATEKVRIDIINSL 183 (374)
Q Consensus 150 ~~~~~~~~~~--~~~~~i~~SaT~~~~~~~~~~~~~ 183 (374)
..+..+.... ++.++++||||+++.... +...+
T Consensus 197 ~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~-~~~~~ 231 (245)
T 3dkp_A 197 DQLASIFLACTSHKVRRAMFSATFAYDVEQ-WCKLN 231 (245)
T ss_dssp HHHHHHHHHCCCTTCEEEEEESSCCHHHHH-HHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEEeccCCHHHHH-HHHHh
Confidence 2333333322 367899999999887654 44433
No 65
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=4.2e-28 Score=199.46 Aligned_cols=173 Identities=18% Similarity=0.154 Sum_probs=128.8
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc------cCCcEEEEcchHHHHHHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV------TGKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~------~~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
.+++.+ +||.+|+|+|.++++.+.+++++++.+|||+|||++|+++++. .+.+++|++|+++|+.|+.+.+..
T Consensus 15 ~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 93 (206)
T 1vec_A 15 LMGIFE-MGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQ 93 (206)
T ss_dssp HHHHHT-TTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHH
T ss_pred HHHHHH-CCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHH
Confidence 456777 8999999999999999999999999999999999998877664 246799999999999999999887
Q ss_pred c-----CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHH
Q 037567 76 R-----GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYK 150 (374)
Q Consensus 76 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~ 150 (374)
+ +..+....++...... .......++|+|+||+++...... ....+.+++++|+||||++.+.++. .
T Consensus 94 ~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~lViDEah~~~~~~~~-----~ 165 (206)
T 1vec_A 94 VSKHMGGAKVMATTGGTNLRDD-IMRLDDTVHVVIATPGRILDLIKK--GVAKVDHVQMIVLDEADKLLSQDFV-----Q 165 (206)
T ss_dssp HTTTSSSCCEEEECSSSCHHHH-HHHTTSCCSEEEECHHHHHHHHHT--TCSCCTTCCEEEEETHHHHTSTTTH-----H
T ss_pred HHhhcCCceEEEEeCCccHHHH-HHhcCCCCCEEEeCHHHHHHHHHc--CCcCcccCCEEEEEChHHhHhhCcH-----H
Confidence 5 3445555544433222 222345689999999988654433 2233567899999999998775432 3
Q ss_pred HHHHHHHhcC-CCCeeEEEeecCcccHHHHHHhc
Q 037567 151 QLDKLRTFLL-GVPFVALTATATEKVRIDIINSL 183 (374)
Q Consensus 151 ~~~~~~~~~~-~~~~i~~SaT~~~~~~~~~~~~~ 183 (374)
.+..+....+ +.++++||||+++.....+...+
T Consensus 166 ~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l 199 (206)
T 1vec_A 166 IMEDIILTLPKNRQILLYSATFPLSVQKFMNSHL 199 (206)
T ss_dssp HHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHC
T ss_pred HHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHc
Confidence 4445555444 68899999999887654344333
No 66
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.95 E-value=1.8e-28 Score=203.48 Aligned_cols=172 Identities=17% Similarity=0.204 Sum_probs=128.8
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcccccc------CCcEEEEcchHHHHHHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVT------GKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~------~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
.+++++ +||.+|+|+|.++++.+.+++++++.+|||+|||++|+++++.. +.+++|++|+++|+.|+.+.+++
T Consensus 16 ~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 94 (219)
T 1q0u_A 16 IEAIKT-LRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLK 94 (219)
T ss_dssp HHHHHH-TTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHH
Confidence 467776 89999999999999999999999999999999999998887642 56899999999999999999876
Q ss_pred c--------CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchH
Q 037567 76 R--------GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRL 147 (374)
Q Consensus 76 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~ 147 (374)
+ +.......++...... ......+++|+|+||+++...+.. ....+.+++++|+||||.+.++++.
T Consensus 95 ~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~~~lViDEah~~~~~~~~--- 168 (219)
T 1q0u_A 95 ITKFCPKDRMIVARCLIGGTDKQKA-LEKLNVQPHIVIGTPGRINDFIRE--QALDVHTAHILVVDEADLMLDMGFI--- 168 (219)
T ss_dssp HHTTSCGGGCCCEEEECCCSHHHHT-TCCCSSCCSEEEECHHHHHHHHHT--TCCCGGGCCEEEECSHHHHHHTTCH---
T ss_pred HhhhcccccceEEEEEeCCCCHHHH-HHHcCCCCCEEEeCHHHHHHHHHc--CCCCcCcceEEEEcCchHHhhhChH---
Confidence 5 3444444444332222 222234689999999998765433 2234567899999999999876643
Q ss_pred HHHHHHHHHHhcC-CCCeeEEEeecCcccHHHHHHhc
Q 037567 148 EYKQLDKLRTFLL-GVPFVALTATATEKVRIDIINSL 183 (374)
Q Consensus 148 ~~~~~~~~~~~~~-~~~~i~~SaT~~~~~~~~~~~~~ 183 (374)
..+..+...++ +.++++||||++..... +...+
T Consensus 169 --~~l~~i~~~~~~~~~~l~~SAT~~~~~~~-~~~~~ 202 (219)
T 1q0u_A 169 --TDVDQIAARMPKDLQMLVFSATIPEKLKP-FLKKY 202 (219)
T ss_dssp --HHHHHHHHTSCTTCEEEEEESCCCGGGHH-HHHHH
T ss_pred --HHHHHHHHhCCcccEEEEEecCCCHHHHH-HHHHH
Confidence 44555555554 67899999999887654 34433
No 67
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.8e-28 Score=208.59 Aligned_cols=170 Identities=22% Similarity=0.307 Sum_probs=128.9
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc----------cCCcEEEEcchHHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV----------TGKTALVVSPLISLMQDQVM 71 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~----------~~~~~lil~P~~~l~~q~~~ 71 (374)
.+++++ +||.+|+|+|.++++.+++++++++.||||||||++|+++++. .+.+++|++|+++|+.|+.+
T Consensus 66 ~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~ 144 (262)
T 3ly5_A 66 LKAIKE-MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFG 144 (262)
T ss_dssp HHHHHH-TTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHH
T ss_pred HHHHHH-CCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHH
Confidence 456777 8999999999999999999999999999999999999988774 47789999999999999999
Q ss_pred HHHHc----CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchH
Q 037567 72 SLKQR----GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRL 147 (374)
Q Consensus 72 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~ 147 (374)
.++++ +.......++......... ...+++|+|+||+++....... ....+.+++++|+||||++.++++.
T Consensus 145 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~Iiv~Tp~~l~~~~~~~-~~~~~~~l~~lViDEah~l~~~~~~--- 219 (262)
T 3ly5_A 145 VLKELMTHHVHTYGLIMGGSNRSAEAQK-LGNGINIIVATPGRLLDHMQNT-PGFMYKNLQCLVIDEADRILDVGFE--- 219 (262)
T ss_dssp HHHHHTTTCCSCEEEECSSSCHHHHHHH-HHHCCSEEEECHHHHHHHHHHC-TTCCCTTCCEEEECSHHHHHHTTCH---
T ss_pred HHHHHHhhcCceEEEEECCCCHHHHHHH-hcCCCCEEEEcHHHHHHHHHcc-CCcccccCCEEEEcChHHHhhhhHH---
Confidence 99875 3444555554443333322 2234899999999986543321 1134567899999999999887643
Q ss_pred HHHHHHHHHHhcC-CCCeeEEEeecCcccHHHH
Q 037567 148 EYKQLDKLRTFLL-GVPFVALTATATEKVRIDI 179 (374)
Q Consensus 148 ~~~~~~~~~~~~~-~~~~i~~SaT~~~~~~~~~ 179 (374)
..+..+....+ ..++++||||+++......
T Consensus 220 --~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~ 250 (262)
T 3ly5_A 220 --EELKQIIKLLPTRRQTMLFSATQTRKVEDLA 250 (262)
T ss_dssp --HHHHHHHHHSCSSSEEEEECSSCCHHHHHHH
T ss_pred --HHHHHHHHhCCCCCeEEEEEecCCHHHHHHH
Confidence 33444445443 5789999999998876433
No 68
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.95 E-value=3.2e-26 Score=215.05 Aligned_cols=325 Identities=18% Similarity=0.139 Sum_probs=225.8
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcccc---ccCCcEEEEcchHHHHHHHHHHHHH---
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL---VTGKTALVVSPLISLMQDQVMSLKQ--- 75 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~---~~~~~~lil~P~~~l~~q~~~~~~~--- 75 (374)
.++-++++|+ .|++.|..+++.+++|+ +..+.||+|||++|.+|++ ..+..++|++||+.|+.|...++..
T Consensus 69 REAs~R~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~ 145 (997)
T 2ipc_A 69 RESAKRYLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYR 145 (997)
T ss_dssp HHHHHHHTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHH
Confidence 4567888999 89999999999999998 9999999999999998884 2477899999999999998888765
Q ss_pred -cCCceEEcCCCCCchhhhhhhhcCCeeEEEEcCccc-ccCchhhH----HHHHhc---CccEEEEeccchhh-cccCc-
Q 037567 76 -RGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKA-CIIPISFW----SKLLKA---GVCLFAVDEAHCIS-EWGHD- 144 (374)
Q Consensus 76 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l-~~~~~~~~----~~~~~~---~~~~vviDE~h~~~-~~~~~- 144 (374)
+|+.+.++.++...... .....++|+|+||+.+ .+++.... ....+. ++.++|+||+|.+. +.+..
T Consensus 146 ~lGLsv~~i~Gg~~~~~r---~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDeartP 222 (997)
T 2ipc_A 146 GLGLSVGVIQHASTPAER---RKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEARTP 222 (997)
T ss_dssp TTTCCEEECCTTCCHHHH---HHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSSTTSC
T ss_pred hcCCeEEEEeCCCCHHHH---HHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCCCCC
Confidence 37888877776543221 2223589999999988 44433321 123345 78999999999985 21110
Q ss_pred ---------chHHHHHHHHHHH----------------------------------------------------------
Q 037567 145 ---------FRLEYKQLDKLRT---------------------------------------------------------- 157 (374)
Q Consensus 145 ---------~~~~~~~~~~~~~---------------------------------------------------------- 157 (374)
....+..+..+..
T Consensus 223 LIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~l~~ 302 (997)
T 2ipc_A 223 LIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAH 302 (997)
T ss_dssp EEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHHHHH
T ss_pred eeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHHHHH
Confidence 0000000000000
Q ss_pred ----------hc------------------------C--------------------------------------CCCee
Q 037567 158 ----------FL------------------------L--------------------------------------GVPFV 165 (374)
Q Consensus 158 ----------~~------------------------~--------------------------------------~~~~i 165 (374)
.+ + -.++.
T Consensus 303 ~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~kLs 382 (997)
T 2ipc_A 303 MLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKRA 382 (997)
T ss_dssp HHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSEEE
T ss_pred HHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhChHhe
Confidence 00 0 01378
Q ss_pred EEEeecCcccHHHHHHhcCCCCCeEEEeccCCCceeEEEEeecCCcchHHHHHHHHHHhhcCCCcEEEEecchhHHHHHH
Q 037567 166 ALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEIS 245 (374)
Q Consensus 166 ~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~ 245 (374)
+||+|..... ..+...+++.- ..+.+............++.....+...++.++.+....+.++||+|.|.+..+.++
T Consensus 383 GMTGTA~tE~-~Ef~~iY~l~V-v~IPTn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS 460 (997)
T 2ipc_A 383 GMTGTAKTEE-KEFQEIYGMDV-VVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLS 460 (997)
T ss_dssp EEESSCGGGH-HHHHHHHCCCE-EECCCSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHH
T ss_pred ecCCCchHHH-HHHHHHhCCCE-EEcCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHH
Confidence 8888887653 35666666652 222222222233334445566666777888888888788999999999999999999
Q ss_pred HHHH----------------------------------------------------------------------------
Q 037567 246 KALK---------------------------------------------------------------------------- 249 (374)
Q Consensus 246 ~~l~---------------------------------------------------------------------------- 249 (374)
+.|+
T Consensus 461 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (997)
T 2ipc_A 461 QMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVL 540 (997)
T ss_dssp HHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhhhhHHH
Confidence 9998
Q ss_pred HcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccccCc-------------------c------------
Q 037567 250 QLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV-------------------R------------ 298 (374)
Q Consensus 250 ~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~~~~-------------------~------------ 298 (374)
+.|++...++......+-+.+.+.=+ .-.|.|+|+|+++|.|+.-- .
T Consensus 541 ~~gI~H~VLNAK~he~EAeIIAqAG~--~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (997)
T 2ipc_A 541 RQGIPHQVLNAKHHAREAEIVAQAGR--SKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMVA 618 (997)
T ss_dssp HHCCCCCEECSSSHHHHHHHHHTTTS--TTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHHHH
T ss_pred HcCCCeeeccccchHHHHHHHHhcCC--CCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccccccccccccccccc
Confidence 45566566665543333333333222 23699999999999998532 1
Q ss_pred -------------------------------------------EEEEECCCCChhHHHHhhccCCCCCCceEEEEEeecc
Q 037567 299 -------------------------------------------HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARS 335 (374)
Q Consensus 299 -------------------------------------------~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 335 (374)
+||....+.|..--.|..||+||.|.+|....|++-+
T Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSLe 698 (997)
T 2ipc_A 619 GKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFD 698 (997)
T ss_dssp TCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEESS
T ss_pred cchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEEEEECC
Confidence 6888888899999999999999999999998888776
Q ss_pred C
Q 037567 336 N 336 (374)
Q Consensus 336 ~ 336 (374)
|
T Consensus 699 D 699 (997)
T 2ipc_A 699 D 699 (997)
T ss_dssp S
T ss_pred h
Confidence 6
No 69
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.95 E-value=5.1e-28 Score=202.16 Aligned_cols=166 Identities=19% Similarity=0.213 Sum_probs=125.5
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc------cCCcEEEEcchHHHHHHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV------TGKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~------~~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
.++|.+ +||.+|+++|.++++.+.+++++++.+|||+|||++|+++++. .+.+++|++|+++|+.|+.+.++.
T Consensus 36 ~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 114 (230)
T 2oxc_A 36 LEGLRA-AGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITA 114 (230)
T ss_dssp HHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHH
Confidence 456766 8999999999999999999999999999999999998877653 256899999999999999999987
Q ss_pred c-----CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHH
Q 037567 76 R-----GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYK 150 (374)
Q Consensus 76 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~ 150 (374)
+ +..+..+.++......... ...++|+|+||+++..+... ....+.+++++|+||||++.++|. +. .
T Consensus 115 ~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~Iiv~Tp~~l~~~~~~--~~~~~~~~~~lViDEah~~~~~~~-~~---~ 186 (230)
T 2oxc_A 115 IGIKMEGLECHVFIGGTPLSQDKTR--LKKCHIAVGSPGRIKQLIEL--DYLNPGSIRLFILDEADKLLEEGS-FQ---E 186 (230)
T ss_dssp HTTTSTTCCEEEECTTSCHHHHHHH--TTSCSEEEECHHHHHHHHHT--TSSCGGGCCEEEESSHHHHHSTTS-SH---H
T ss_pred HhcccCCceEEEEeCCCCHHHHHHh--ccCCCEEEECHHHHHHHHhc--CCcccccCCEEEeCCchHhhcCcc-hH---H
Confidence 6 3455555554433322221 24589999999998765433 223456788999999999987652 22 3
Q ss_pred HHHHHHHhcC-CCCeeEEEeecCcccH
Q 037567 151 QLDKLRTFLL-GVPFVALTATATEKVR 176 (374)
Q Consensus 151 ~~~~~~~~~~-~~~~i~~SaT~~~~~~ 176 (374)
.+..+...++ +.++++||||+++...
T Consensus 187 ~~~~i~~~~~~~~~~l~lSAT~~~~~~ 213 (230)
T 2oxc_A 187 QINWIYSSLPASKQMLAVSATYPEFLA 213 (230)
T ss_dssp HHHHHHHHSCSSCEEEEEESCCCHHHH
T ss_pred HHHHHHHhCCCCCeEEEEEeccCHHHH
Confidence 3444445454 6789999999987654
No 70
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.95 E-value=3.1e-28 Score=204.39 Aligned_cols=174 Identities=18% Similarity=0.192 Sum_probs=124.4
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc------cCCcEEEEcchHHHHHHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV------TGKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~------~~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
.+++.+ +||..|+++|.++++.+++++++++.+|||+|||++|+++++. .+.+++|++|+++|+.|+.+.++.
T Consensus 42 ~~~l~~-~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 120 (237)
T 3bor_A 42 LRGIYA-YGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILA 120 (237)
T ss_dssp HHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHH
Confidence 456665 8999999999999999999999999999999999999887764 356899999999999999999987
Q ss_pred cC----CceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHH
Q 037567 76 RG----INAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQ 151 (374)
Q Consensus 76 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~ 151 (374)
++ .......++............+.++|+|+||+++...+.. .......++++|+||||++.++++. ..
T Consensus 121 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~--~~~~~~~~~~lViDEah~~~~~~~~-----~~ 193 (237)
T 3bor_A 121 LGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR--RYLSPKWIKMFVLDEADEMLSRGFK-----DQ 193 (237)
T ss_dssp HTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHT--TSSCSTTCCEEEEESHHHHHHTTCH-----HH
T ss_pred HhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHh--CCcCcccCcEEEECCchHhhccCcH-----HH
Confidence 64 4444444444333333333445589999999988665443 2233567899999999999876643 33
Q ss_pred HHHHHHhc-CCCCeeEEEeecCcccHHHHHHhc
Q 037567 152 LDKLRTFL-LGVPFVALTATATEKVRIDIINSL 183 (374)
Q Consensus 152 ~~~~~~~~-~~~~~i~~SaT~~~~~~~~~~~~~ 183 (374)
+..+.... ++.++++||||+++.........+
T Consensus 194 l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l 226 (237)
T 3bor_A 194 IYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFM 226 (237)
T ss_dssp HHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHC
T ss_pred HHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHC
Confidence 33444433 367899999999987664333333
No 71
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.95 E-value=1.5e-27 Score=200.37 Aligned_cols=177 Identities=23% Similarity=0.304 Sum_probs=130.2
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc----------cCCcEEEEcchHHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV----------TGKTALVVSPLISLMQDQVM 71 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~----------~~~~~lil~P~~~l~~q~~~ 71 (374)
.++|++ +||..|+|+|.++++.+.+++++++.+|||+|||++|+++++. .+.+++|++|+++|+.|+.+
T Consensus 37 ~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~ 115 (236)
T 2pl3_A 37 LKGLQE-AQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFE 115 (236)
T ss_dssp HHHHHH-TTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHH
T ss_pred HHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHH
Confidence 456766 8999999999999999999999999999999999998887663 36789999999999999999
Q ss_pred HHHHcC----CceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchH
Q 037567 72 SLKQRG----INAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRL 147 (374)
Q Consensus 72 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~ 147 (374)
.++.++ ..+....++.......... ..++|+|+||+++...+... ......+++++|+||||++.++++.
T Consensus 116 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~iiv~Tp~~l~~~l~~~-~~~~~~~~~~lViDEah~~~~~~~~--- 189 (236)
T 2pl3_A 116 VLRKVGKNHDFSAGLIIGGKDLKHEAERI--NNINILVCTPGRLLQHMDET-VSFHATDLQMLVLDEADRILDMGFA--- 189 (236)
T ss_dssp HHHHHTTTSSCCEEEECCC--CHHHHHHH--TTCSEEEECHHHHHHHHHHC-SSCCCTTCCEEEETTHHHHHHTTTH---
T ss_pred HHHHHhCCCCeeEEEEECCCCHHHHHHhC--CCCCEEEECHHHHHHHHHhc-CCcccccccEEEEeChHHHhcCCcH---
Confidence 998864 4555555544433322222 46899999999986543321 1123467889999999999876653
Q ss_pred HHHHHHHHHHhcC-CCCeeEEEeecCcccHHHHHHhcCCCCCe
Q 037567 148 EYKQLDKLRTFLL-GVPFVALTATATEKVRIDIINSLKLKNPY 189 (374)
Q Consensus 148 ~~~~~~~~~~~~~-~~~~i~~SaT~~~~~~~~~~~~~~~~~~~ 189 (374)
..+..+...++ +.++++||||+++.... +... .+.++.
T Consensus 190 --~~~~~i~~~~~~~~~~l~~SAT~~~~~~~-~~~~-~~~~p~ 228 (236)
T 2pl3_A 190 --DTMNAVIENLPKKRQTLLFSATQTKSVKD-LARL-SLKNPE 228 (236)
T ss_dssp --HHHHHHHHTSCTTSEEEEEESSCCHHHHH-HHHH-SCSSCE
T ss_pred --HHHHHHHHhCCCCCeEEEEEeeCCHHHHH-HHHH-hCCCCE
Confidence 34455555554 67799999999887653 3333 334443
No 72
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.95 E-value=1.1e-27 Score=202.06 Aligned_cols=168 Identities=20% Similarity=0.225 Sum_probs=128.2
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc------cCCcEEEEcchHHHHHHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV------TGKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~------~~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
.++|++ +||..|+++|.++++.+++++++++.+|||+|||++|+++++. .+.+++|++|+++|+.|+.+.++.
T Consensus 55 ~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~ 133 (249)
T 3ber_A 55 CEACDQ-LGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEA 133 (249)
T ss_dssp HHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHH
Confidence 456666 8999999999999999999999999999999999999888764 256799999999999999999887
Q ss_pred c----CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHH
Q 037567 76 R----GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQ 151 (374)
Q Consensus 76 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~ 151 (374)
+ +.......++...... .......++|+|+||+++...+... ....+.+++++|+||||++.++++. ..
T Consensus 134 ~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~I~v~Tp~~l~~~l~~~-~~~~l~~~~~lViDEah~l~~~~~~-----~~ 206 (249)
T 3ber_A 134 LGSSIGVQSAVIVGGIDSMSQ-SLALAKKPHIIIATPGRLIDHLENT-KGFNLRALKYLVMDEADRILNMDFE-----TE 206 (249)
T ss_dssp HHGGGTCCEEEECTTSCHHHH-HHHHHTCCSEEEECHHHHHHHHHHS-TTCCCTTCCEEEECSHHHHHHTTCH-----HH
T ss_pred HhccCCeeEEEEECCCChHHH-HHHhcCCCCEEEECHHHHHHHHHcC-CCcCccccCEEEEcChhhhhccChH-----HH
Confidence 6 5666666555433322 2233456899999999986554321 1223567899999999999876543 33
Q ss_pred HHHHHHhcC-CCCeeEEEeecCcccHH
Q 037567 152 LDKLRTFLL-GVPFVALTATATEKVRI 177 (374)
Q Consensus 152 ~~~~~~~~~-~~~~i~~SaT~~~~~~~ 177 (374)
+..+...++ +.++++||||++.....
T Consensus 207 l~~i~~~~~~~~~~l~~SAT~~~~v~~ 233 (249)
T 3ber_A 207 VDKILKVIPRDRKTFLFSATMTKKVQK 233 (249)
T ss_dssp HHHHHHSSCSSSEEEEEESSCCHHHHH
T ss_pred HHHHHHhCCCCCeEEEEeccCCHHHHH
Confidence 444444443 67899999999987654
No 73
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.95 E-value=1.4e-27 Score=198.90 Aligned_cols=170 Identities=19% Similarity=0.196 Sum_probs=123.2
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc------cCCcEEEEcchHHHHHHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV------TGKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~------~~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
.+.+.+ +||.+|+|+|.++++.+.+++++++.+|||+|||++|+++++. .+.+++|++|+++|+.|+.+.+..
T Consensus 26 ~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 104 (224)
T 1qde_A 26 LRGVFG-YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMA 104 (224)
T ss_dssp HHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHH-CCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHH
Confidence 456766 7999999999999999999999999999999999998877663 356899999999999999999987
Q ss_pred c----CCceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHH
Q 037567 76 R----GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQ 151 (374)
Q Consensus 76 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~ 151 (374)
+ +..+....++.......... ..++|+|+||+++...+.. ......+++++|+||||++.+++.. ..
T Consensus 105 ~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~iiv~Tp~~l~~~~~~--~~~~~~~~~~iViDEah~~~~~~~~-----~~ 175 (224)
T 1qde_A 105 LAFHMDIKVHACIGGTSFVEDAEGL--RDAQIVVGTPGRVFDNIQR--RRFRTDKIKMFILDEADEMLSSGFK-----EQ 175 (224)
T ss_dssp HTTTSCCCEEEECC----------C--TTCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEETHHHHHHTTCH-----HH
T ss_pred HhcccCceEEEEeCCcchHHHHhcC--CCCCEEEECHHHHHHHHHh--CCcchhhCcEEEEcChhHHhhhhhH-----HH
Confidence 6 44555555443332222211 2379999999988655433 2233567899999999999876643 33
Q ss_pred HHHHHHhc-CCCCeeEEEeecCcccHHHHHH
Q 037567 152 LDKLRTFL-LGVPFVALTATATEKVRIDIIN 181 (374)
Q Consensus 152 ~~~~~~~~-~~~~~i~~SaT~~~~~~~~~~~ 181 (374)
+..+.... ++.++++||||+++........
T Consensus 176 l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~ 206 (224)
T 1qde_A 176 IYQIFTLLPPTTQVVLLSATMPNDVLEVTTK 206 (224)
T ss_dssp HHHHHHHSCTTCEEEEEESSCCHHHHHHHHH
T ss_pred HHHHHHhCCccCeEEEEEeecCHHHHHHHHH
Confidence 44444443 3678999999999876543333
No 74
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.94 E-value=2.4e-27 Score=195.06 Aligned_cols=172 Identities=19% Similarity=0.181 Sum_probs=127.9
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc---------cCCcEEEEcchHHHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV---------TGKTALVVSPLISLMQDQVMS 72 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~---------~~~~~lil~P~~~l~~q~~~~ 72 (374)
.+++++ +||.+|+|+|.++++.+.+++++++.+|||+|||++|+++++. .+.+++|++|+++|+.|+.+.
T Consensus 13 ~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~ 91 (207)
T 2gxq_A 13 LEALHG-RGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASE 91 (207)
T ss_dssp HHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHH
T ss_pred HHHHHH-cCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHH
Confidence 456776 8999999999999999999999999999999999998777653 356899999999999999999
Q ss_pred HHHcC--CceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHH
Q 037567 73 LKQRG--INAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYK 150 (374)
Q Consensus 73 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~ 150 (374)
+..+. .......++........ .....++|+|+||+++...... ....+.+++++|+||||++.+.+.. .
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~iViDEah~~~~~~~~-----~ 163 (207)
T 2gxq_A 92 LTAVAPHLKVVAVYGGTGYGKQKE-ALLRGADAVVATPGRALDYLRQ--GVLDLSRVEVAVLDEADEMLSMGFE-----E 163 (207)
T ss_dssp HHHHCTTSCEEEECSSSCSHHHHH-HHHHCCSEEEECHHHHHHHHHH--TSSCCTTCSEEEEESHHHHHHTTCH-----H
T ss_pred HHHHhhcceEEEEECCCChHHHHH-HhhCCCCEEEECHHHHHHHHHc--CCcchhhceEEEEEChhHhhccchH-----H
Confidence 99874 44555555443332222 2234579999999988665433 2234567899999999999775543 3
Q ss_pred HHHHHHHhcC-CCCeeEEEeecCcccHHHHHHhc
Q 037567 151 QLDKLRTFLL-GVPFVALTATATEKVRIDIINSL 183 (374)
Q Consensus 151 ~~~~~~~~~~-~~~~i~~SaT~~~~~~~~~~~~~ 183 (374)
.+..+....+ +.++++||||+++.... +...+
T Consensus 164 ~~~~i~~~~~~~~~~i~~SAT~~~~~~~-~~~~~ 196 (207)
T 2gxq_A 164 EVEALLSATPPSRQTLLFSATLPSWAKR-LAERY 196 (207)
T ss_dssp HHHHHHHTSCTTSEEEEECSSCCHHHHH-HHHHH
T ss_pred HHHHHHHhCCccCeEEEEEEecCHHHHH-HHHHH
Confidence 3444444443 67899999999887653 44433
No 75
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.94 E-value=3.3e-27 Score=200.29 Aligned_cols=167 Identities=19% Similarity=0.228 Sum_probs=125.0
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcccccc---------------CCcEEEEcchHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVT---------------GKTALVVSPLISLM 66 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~---------------~~~~lil~P~~~l~ 66 (374)
.++|.+ +||.+|+|+|.++++.+++++++++.+|||+|||++|+++++.. +.++||++|+++|+
T Consensus 35 ~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~ 113 (253)
T 1wrb_A 35 RNNILL-ASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELA 113 (253)
T ss_dssp TTTTTT-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHH
T ss_pred HHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHH
Confidence 345665 79999999999999999999999999999999999998887631 35899999999999
Q ss_pred HHHHHHHHHcC----CceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhccc
Q 037567 67 QDQVMSLKQRG----INAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWG 142 (374)
Q Consensus 67 ~q~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~ 142 (374)
.|+.+.++.++ .......++....... ......++|+|+||+++...+.. ....+.+++++|+||||++.+++
T Consensus 114 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~Ivv~Tp~~l~~~l~~--~~~~~~~~~~lViDEah~~~~~~ 190 (253)
T 1wrb_A 114 IQILSESQKFSLNTPLRSCVVYGGADTHSQI-REVQMGCHLLVATPGRLVDFIEK--NKISLEFCKYIVLDEADRMLDMG 190 (253)
T ss_dssp HHHHHHHHHHHTTSSCCEEEECSSSCSHHHH-HHHSSCCSEEEECHHHHHHHHHT--TSBCCTTCCEEEEETHHHHHHTT
T ss_pred HHHHHHHHHHhccCCceEEEEECCCCHHHHH-HHhCCCCCEEEECHHHHHHHHHc--CCCChhhCCEEEEeCHHHHHhCc
Confidence 99999988763 4445555544333322 22345689999999998765443 22345678899999999998766
Q ss_pred CcchHHHHHHHHHHHh--cC---CCCeeEEEeecCcccHH
Q 037567 143 HDFRLEYKQLDKLRTF--LL---GVPFVALTATATEKVRI 177 (374)
Q Consensus 143 ~~~~~~~~~~~~~~~~--~~---~~~~i~~SaT~~~~~~~ 177 (374)
+. ..+..+... .+ +.++++||||+++....
T Consensus 191 ~~-----~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~ 225 (253)
T 1wrb_A 191 FE-----PQIRKIIEESNMPSGINRQTLMFSATFPKEIQK 225 (253)
T ss_dssp CH-----HHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHH
T ss_pred hH-----HHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHH
Confidence 43 334444442 22 46799999999887654
No 76
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.94 E-value=6e-27 Score=202.71 Aligned_cols=165 Identities=16% Similarity=0.226 Sum_probs=123.2
Q ss_pred hhHHHhHcCCCCCchhHHHHHHHHHcC--CCEEEEccCCCCchhhhhccccc------cCCcEEEEcchHHHHHHHHHHH
Q 037567 2 VSTLKKYFGYSVFRPYQKDVIQRIIEK--RDCLVVMATGSGKSLCYQLPPLV------TGKTALVVSPLISLMQDQVMSL 73 (374)
Q Consensus 2 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~--~~~l~~a~tGsGKT~~~~l~~~~------~~~~~lil~P~~~l~~q~~~~~ 73 (374)
.++|.. +||..|+++|.++++.++++ +++++.||||||||++|+++++. ...++||++|+++|+.|+.+.+
T Consensus 104 ~~~l~~-~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~ 182 (300)
T 3fmo_B 104 LQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVI 182 (300)
T ss_dssp HHHHHH-TTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHH
T ss_pred HHHHHH-cCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHH
Confidence 456776 89999999999999999987 89999999999999999988774 2457999999999999999888
Q ss_pred HHcC-----CceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhc-ccCcchH
Q 037567 74 KQRG-----INAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISE-WGHDFRL 147 (374)
Q Consensus 74 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~-~~~~~~~ 147 (374)
..++ .......++..... .....++|+|+||+++..++... ....+.+++++|+||+|++.+ .++.
T Consensus 183 ~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~IlV~TP~~l~~~l~~~-~~~~l~~l~~lVlDEad~l~~~~~~~--- 254 (300)
T 3fmo_B 183 EQMGKFYPELKLAYAVRGNKLER----GQKISEQIVIGTPGTVLDWCSKL-KFIDPKKIKVFVLDEADVMIATQGHQ--- 254 (300)
T ss_dssp HHHTTTSTTCCEEEESTTCCCCT----TCCCCCSEEEECHHHHHHHHTTT-CCCCGGGCSEEEETTHHHHHHSTTHH---
T ss_pred HHHHhhCCCcEEEEEeCCccHhh----hhcCCCCEEEECHHHHHHHHHhc-CCCChhhceEEEEeCHHHHhhccCcH---
Confidence 8753 34444443332211 11345799999999986654321 223457889999999999986 3422
Q ss_pred HHHHHHHHHHhc-CCCCeeEEEeecCcccHH
Q 037567 148 EYKQLDKLRTFL-LGVPFVALTATATEKVRI 177 (374)
Q Consensus 148 ~~~~~~~~~~~~-~~~~~i~~SaT~~~~~~~ 177 (374)
..+..+...+ ++.++++||||++.....
T Consensus 255 --~~~~~i~~~~~~~~q~i~~SAT~~~~v~~ 283 (300)
T 3fmo_B 255 --DQSIRIQRMLPRNCQMLLFSATFEDSVWK 283 (300)
T ss_dssp --HHHHHHHTTSCTTCEEEEEESCCCHHHHH
T ss_pred --HHHHHHHHhCCCCCEEEEEeccCCHHHHH
Confidence 3333444443 368899999999997764
No 77
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.93 E-value=6.8e-26 Score=211.66 Aligned_cols=307 Identities=17% Similarity=0.224 Sum_probs=170.8
Q ss_pred HcCCCCCchhHHHHHHHH----HcCCCEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHHcCCceEEc
Q 037567 8 YFGYSVFRPYQKDVIQRI----IEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGINAEFL 83 (374)
Q Consensus 8 ~~~~~~~~~~Q~~~~~~~----~~~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 83 (374)
..|| ++||+|.+++..+ .+++++++.||||+|||++|+++++....+++|++||++|++|+.+++..++.+...+
T Consensus 3 ~~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~~~~~~~~~~t~~l~~q~~~~~~~l~~~~~~l 81 (540)
T 2vl7_A 3 VLKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQLKKKVLIFTRTHSQLDSIYKNAKLLGLKTGFL 81 (540)
T ss_dssp -------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHGGGTCCEEEC
T ss_pred CCCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHhcCCcEEEe
Confidence 4678 7999999987654 5688999999999999999999999889999999999999999999999887666555
Q ss_pred CCCCCch-------h-------------------------hh--------------hhhhcCCeeEEEEcCcccccCchh
Q 037567 84 GSAQTDS-------S-------------------------VQ--------------TKAETGYFQLLFMTPEKACIIPIS 117 (374)
Q Consensus 84 ~~~~~~~-------~-------------------------~~--------------~~~~~~~~~i~i~T~~~l~~~~~~ 117 (374)
.+..... . .+ ........+|+|+|+..+......
T Consensus 82 ~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~~~~~ 161 (540)
T 2vl7_A 82 IGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLFQKPIR 161 (540)
T ss_dssp ---------------------------------------------------------CTTGGGCSEEEEETHHHHSHHHH
T ss_pred cCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHhcCHHHH
Confidence 4322100 0 00 001123459999999988664322
Q ss_pred hHHHHH-------hcCccEEEEeccchhhcccCcc----------hHHH-------------------------------
Q 037567 118 FWSKLL-------KAGVCLFAVDEAHCISEWGHDF----------RLEY------------------------------- 149 (374)
Q Consensus 118 ~~~~~~-------~~~~~~vviDE~h~~~~~~~~~----------~~~~------------------------------- 149 (374)
.... .....++||||||++.. ..+. ....
T Consensus 162 --~~~~~~~~~~~~~~~~~vIiDEAHnl~~-a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~l~~~ 238 (540)
T 2vl7_A 162 --NSVFCNKDDCLKLEDYLIVIDEAHNLLE-ADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVKDYINLLIDYMSKL 238 (540)
T ss_dssp --HHHSCSSTTSCCGGGEEEEETTGGGGGG-GGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTS
T ss_pred --HhhCcccccccCcCCCEEEEEccccHHH-HHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHh
Confidence 2221 24567999999999943 1000 0000
Q ss_pred --------------------HHHHHHH--------------------Hh---------------cCC----------CC-
Q 037567 150 --------------------KQLDKLR--------------------TF---------------LLG----------VP- 163 (374)
Q Consensus 150 --------------------~~~~~~~--------------------~~---------------~~~----------~~- 163 (374)
..+..+. .. ..+ ..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~P~~~~~~l~~~~~~ 318 (540)
T 2vl7_A 239 IKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKVPSDVNQLIEDALNV 318 (540)
T ss_dssp CCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEECSCHHHHHHHHTCC
T ss_pred hccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEehHHHHHHHHHhcCc
Confidence 0000000 00 000 12
Q ss_pred ---eeEEEeecCcccHHHHHHhcCCCCCeEEEec-cCCCceeEEEEeecCCc-------chHHHHHHHHHHhhcCCCcEE
Q 037567 164 ---FVALTATATEKVRIDIINSLKLKNPYVTIAS-FDRKNLFYGVKVINRGQ-------SFVDELVQEILKSVAGAGSII 232 (374)
Q Consensus 164 ---~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l 232 (374)
+|++|||+.+... +...+. ..... ......... ....... ..+.+.+..+... ..++++
T Consensus 319 ~~~~IltSATL~p~~~--~~~~f~-----~~~~~~~g~~~~~~~-~~l~s~f~~r~~~~~~~~~~l~~~~~~--~~g~~l 388 (540)
T 2vl7_A 319 KTFKVLMSGTLPESLT--LTNSYK-----IVVNESYGRGEYYYC-PNVTSELRKRNSNIPIYSILLKRIYEN--SSKSVL 388 (540)
T ss_dssp SSCEEEEESSCCTTCC--CTTEEE-----EECCCC-CCCEEEEC-TTCCCCGGGHHHHHHHHHHHHHHHHHT--CSSEEE
T ss_pred cCCeEEEcccCCCCcc--cchhcC-----CchhheecCCcceec-cccCCCcccccCHHHHHHHHHHHHHHh--CCCCEE
Confidence 3777888776200 000000 00000 000000000 0011111 1122233333332 467899
Q ss_pred EEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEE--EeccccccccccC----ccEEEEECCC
Q 037567 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMV--ATMAFGMGIDKPD----VRHVIHYGCP 306 (374)
Q Consensus 233 Vf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv--~t~~~~~G~d~~~----~~~vi~~~~p 306 (374)
||++|...++.+++.++. . ....++.. .++..+++.|+++. .|++ +|..+++|+|+|+ +++||+.+.|
T Consensus 389 vff~S~~~~~~v~~~l~~--~-~~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lP 462 (540)
T 2vl7_A 389 VFFPSYEMLESVRIHLSG--I-PVIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESLVLAGLP 462 (540)
T ss_dssp EEESCHHHHHHHHTTCTT--S-CEEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEEEEESCC
T ss_pred EEeCCHHHHHHHHHHhcc--C-ceEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEEEEECCC
Confidence 999999999999988864 2 23455543 57889999998865 5666 7799999999998 7889999988
Q ss_pred CCh------------------------------hHHHHhhccCCCCCCceEEEEEeec
Q 037567 307 KTL------------------------------ESYYQESGRCGRDGIASVCWLYYAR 334 (374)
Q Consensus 307 ~s~------------------------------~~~~Q~~GR~~R~~~~g~~~~~~~~ 334 (374)
... ..+.|.+||+.|...+..+++++++
T Consensus 463 f~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 463 YPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp CCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred CCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 521 3457999999998554434444444
No 78
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.93 E-value=3.4e-25 Score=174.42 Aligned_cols=131 Identities=27% Similarity=0.372 Sum_probs=118.1
Q ss_pred chHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEecccccc
Q 037567 212 SFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMG 291 (374)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G 291 (374)
....+.+.+++... .++++||||+++..++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||+|+++++|
T Consensus 20 ~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 98 (163)
T 2hjv_A 20 ENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARG 98 (163)
T ss_dssp GGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTT
T ss_pred HHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcC
Confidence 34455666666654 67899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccEEEEECCCCChhHHHHhhccCCCCCCceEEEEEeeccCCCcccce
Q 037567 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFY 343 (374)
Q Consensus 292 ~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~ 343 (374)
+|+|++++||++++|+++.+|+||+||+||.|+.|.+++++.+.+...++.+
T Consensus 99 ld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i 150 (163)
T 2hjv_A 99 IDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADI 150 (163)
T ss_dssp CCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHH
T ss_pred CchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988765444433
No 79
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.93 E-value=4.2e-25 Score=177.16 Aligned_cols=133 Identities=23% Similarity=0.379 Sum_probs=107.7
Q ss_pred hHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccc
Q 037567 213 FVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292 (374)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~ 292 (374)
.....+.++++....++++||||+++..++.+++.|+..|+.+..+||+++..+|..+++.|++|+.+|||+|+++++|+
T Consensus 31 ~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gl 110 (185)
T 2jgn_A 31 DKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGL 110 (185)
T ss_dssp GHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC------
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCC
Confidence 34556666766655688999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccEEEEECCCCChhHHHHhhccCCCCCCceEEEEEeeccCCCcccceec
Q 037567 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCG 345 (374)
Q Consensus 293 d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~ 345 (374)
|+|++++||++++|+++.+|+||+||+||.|+.|.+++++++.+...++.+.+
T Consensus 111 di~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 163 (185)
T 2jgn_A 111 DISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLD 163 (185)
T ss_dssp CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHH
T ss_pred CcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988777666654
No 80
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.92 E-value=1.6e-24 Score=177.91 Aligned_cols=128 Identities=31% Similarity=0.460 Sum_probs=115.5
Q ss_pred chHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEecccccc
Q 037567 212 SFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMG 291 (374)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G 291 (374)
....+.+.++++.. .++++||||+++..++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||+|+++++|
T Consensus 16 ~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 94 (212)
T 3eaq_A 16 RGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARG 94 (212)
T ss_dssp TSHHHHHHHHHHHH-CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCS
T ss_pred HHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcC
Confidence 34556666666653 67899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccEEEEECCCCChhHHHHhhccCCCCCCceEEEEEeeccCCCcc
Q 037567 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKG 340 (374)
Q Consensus 292 ~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~ 340 (374)
+|+|++++||++++|++...|+||+||+||.|+.|.+++++++.+...+
T Consensus 95 idi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~ 143 (212)
T 3eaq_A 95 LDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDV 143 (212)
T ss_dssp SSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHH
T ss_pred CCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHH
Confidence 9999999999999999999999999999999999999999999874443
No 81
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.92 E-value=1e-24 Score=172.06 Aligned_cols=129 Identities=22% Similarity=0.367 Sum_probs=112.8
Q ss_pred HHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEecccccccc
Q 037567 214 VDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGID 293 (374)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d 293 (374)
..+.+.++++.. .++++||||+++..++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||+|+++++|+|
T Consensus 17 K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d 95 (165)
T 1fuk_A 17 KYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGID 95 (165)
T ss_dssp HHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCC
T ss_pred HHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCC
Confidence 455666666654 6789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccEEEEECCCCChhHHHHhhccCCCCCCceEEEEEeeccCCCcccce
Q 037567 294 KPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFY 343 (374)
Q Consensus 294 ~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~ 343 (374)
+|++++||++++|+++.+|.||+||+||.|+.|.+++++.+.+...+..+
T Consensus 96 ~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~ 145 (165)
T 1fuk_A 96 VQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMREL 145 (165)
T ss_dssp CCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHH
T ss_pred cccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHH
Confidence 99999999999999999999999999999999999999998875444433
No 82
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.92 E-value=1.9e-24 Score=172.25 Aligned_cols=126 Identities=21% Similarity=0.353 Sum_probs=111.7
Q ss_pred HHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEecccccccc
Q 037567 214 VDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGID 293 (374)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d 293 (374)
..+.+.++++.. ..+++||||+++..++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||+|+++++|+|
T Consensus 21 K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid 99 (175)
T 2rb4_A 21 KYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGID 99 (175)
T ss_dssp HHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTC
T ss_pred HHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCC
Confidence 455666666654 5789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccEEEEECCC------CChhHHHHhhccCCCCCCceEEEEEeeccCCCcc
Q 037567 294 KPDVRHVIHYGCP------KTLESYYQESGRCGRDGIASVCWLYYARSNFAKG 340 (374)
Q Consensus 294 ~~~~~~vi~~~~p------~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~ 340 (374)
+|++++||++++| .+..+|+||+||+||.|+.|.+++++.+.+...+
T Consensus 100 ~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~ 152 (175)
T 2rb4_A 100 VKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSL 152 (175)
T ss_dssp CTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHH
T ss_pred cccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHH
Confidence 9999999999999 8999999999999999999999999998764433
No 83
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.91 E-value=2.9e-24 Score=170.34 Aligned_cols=123 Identities=19% Similarity=0.331 Sum_probs=114.0
Q ss_pred chHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEecccccc
Q 037567 212 SFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMG 291 (374)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G 291 (374)
....+.+.++++.. .++++||||+++..++.+++.|...++.+..+||+++..+|..+++.|++|+.+|||+|+++++|
T Consensus 16 ~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 94 (172)
T 1t5i_A 16 NEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRG 94 (172)
T ss_dssp GGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTT
T ss_pred HHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcC
Confidence 34555666666654 67899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccEEEEECCCCChhHHHHhhccCCCCCCceEEEEEeecc
Q 037567 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARS 335 (374)
Q Consensus 292 ~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 335 (374)
+|+|++++||++++|+++..|+||+||+||.|+.|.+++++.+.
T Consensus 95 ldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~ 138 (172)
T 1t5i_A 95 MDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDE 138 (172)
T ss_dssp CCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSH
T ss_pred cchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcCh
Confidence 99999999999999999999999999999999999999999864
No 84
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.91 E-value=6.6e-24 Score=170.87 Aligned_cols=121 Identities=26% Similarity=0.422 Sum_probs=108.9
Q ss_pred hHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccc
Q 037567 213 FVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292 (374)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~ 292 (374)
.....+.+++.. .++++||||+++..++.+++.|+..++.+..+||+++..+|..+++.|++|+.+|||+|+++++|+
T Consensus 41 ~K~~~L~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gl 118 (191)
T 2p6n_A 41 AKMVYLLECLQK--TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGL 118 (191)
T ss_dssp GHHHHHHHHHTT--SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTC
T ss_pred HHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCC
Confidence 344555566554 357899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccEEEEECCCCChhHHHHhhccCCCCCCceEEEEEeecc
Q 037567 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARS 335 (374)
Q Consensus 293 d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 335 (374)
|+|++++||++++|+++.+|+||+||+||.|+.|.+++++.+.
T Consensus 119 di~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 119 DFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKA 161 (191)
T ss_dssp CCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTT
T ss_pred CcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCc
Confidence 9999999999999999999999999999999999999999875
No 85
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.90 E-value=2.5e-23 Score=178.46 Aligned_cols=128 Identities=32% Similarity=0.467 Sum_probs=113.0
Q ss_pred chHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEecccccc
Q 037567 212 SFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMG 291 (374)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G 291 (374)
....+.+.++++.. .++++||||+++..++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||||+++++|
T Consensus 13 ~~K~~~L~~ll~~~-~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~G 91 (300)
T 3i32_A 13 RGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARG 91 (300)
T ss_dssp SSHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCS
T ss_pred HHHHHHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcC
Confidence 34556666666664 48999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccEEEEECCCCChhHHHHhhccCCCCCCceEEEEEeeccCCCcc
Q 037567 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKG 340 (374)
Q Consensus 292 ~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~ 340 (374)
+|+|++++||++++|++...|+||+||+||.|+.|.|++++++.+...+
T Consensus 92 idi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~ 140 (300)
T 3i32_A 92 LDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDV 140 (300)
T ss_dssp TTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHH
T ss_pred ccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHH
Confidence 9999999999999999999999999999999999999999999884433
No 86
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.82 E-value=6.2e-25 Score=174.19 Aligned_cols=134 Identities=25% Similarity=0.349 Sum_probs=120.2
Q ss_pred HHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEeccccccccc
Q 037567 215 DELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294 (374)
Q Consensus 215 ~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d~ 294 (374)
.+.+.++++. ..++++||||+++..++.+++.|++.++.+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+
T Consensus 18 ~~~l~~ll~~-~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~ 96 (170)
T 2yjt_D 18 TALLVHLLKQ-PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDI 96 (170)
Confidence 3344445444 356899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccEEEEECCCCChhHHHHhhccCCCCCCceEEEEEeeccCCCcccceeccccc
Q 037567 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQT 349 (374)
Q Consensus 295 ~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 349 (374)
|++++||++++|+++..|+||+||+||.|+.|.+++++.+.+...+..+......
T Consensus 97 ~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 151 (170)
T 2yjt_D 97 PDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEE 151 (170)
Confidence 9999999999999999999999999999999999999999888777777654433
No 87
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.88 E-value=2e-21 Score=182.30 Aligned_cols=313 Identities=14% Similarity=0.117 Sum_probs=193.0
Q ss_pred CCCCCchhHHHHHHHH----HcCCCEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHHc----CCceE
Q 037567 10 GYSVFRPYQKDVIQRI----IEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQR----GINAE 81 (374)
Q Consensus 10 ~~~~~~~~Q~~~~~~~----~~~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~----~~~~~ 81 (374)
|| ++||+|.+++..+ .+++++++.||||+|||++|+++++....+++|++||++|+.|+.+++..+ +++..
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~ 79 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEVKPKVLFVVRTHNEFYPIYRDLTKIREKRNITFS 79 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHHCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEE
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEE
Confidence 45 5999999988754 468899999999999999999999998999999999999999999999876 45555
Q ss_pred EcCCCCCc---------------------------------hhhh-----------------hhhhcCCeeEEEEcCccc
Q 037567 82 FLGSAQTD---------------------------------SSVQ-----------------TKAETGYFQLLFMTPEKA 111 (374)
Q Consensus 82 ~~~~~~~~---------------------------------~~~~-----------------~~~~~~~~~i~i~T~~~l 111 (374)
.+.+.... .... ........+|+|+||..+
T Consensus 80 ~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l 159 (551)
T 3crv_A 80 FLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYF 159 (551)
T ss_dssp ECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHH
T ss_pred EEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHh
Confidence 54432100 0000 011123569999999988
Q ss_pred ccCchhhHHHHH-hcCccEEEEeccchhhcccCcc---------------------------------------------
Q 037567 112 CIIPISFWSKLL-KAGVCLFAVDEAHCISEWGHDF--------------------------------------------- 145 (374)
Q Consensus 112 ~~~~~~~~~~~~-~~~~~~vviDE~h~~~~~~~~~--------------------------------------------- 145 (374)
.+...+ .... .....++||||||++.+ ..+.
T Consensus 160 ~~~~~~--~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~~~~ 236 (551)
T 3crv_A 160 FIDRYR--EFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEKYIK 236 (551)
T ss_dssp HCHHHH--TTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSSCEE
T ss_pred cCHHHH--HhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 764221 1111 13556899999999875 2110
Q ss_pred --------hHHH-------------------------HHHH----HH------------------------HHhcCC--C
Q 037567 146 --------RLEY-------------------------KQLD----KL------------------------RTFLLG--V 162 (374)
Q Consensus 146 --------~~~~-------------------------~~~~----~~------------------------~~~~~~--~ 162 (374)
...+ ..+. .+ ...+.. .
T Consensus 237 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~~~~ 316 (551)
T 3crv_A 237 VENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLNDNEL 316 (551)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGCTTC
T ss_pred cccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhccCc
Confidence 0000 0000 00 001122 5
Q ss_pred CeeEEEeecCcccHHHHHHhcCCCCCeEE---E---eccCCCceeEEEEe-ecC-----CcchHHHHHHHHHHhh-cCCC
Q 037567 163 PFVALTATATEKVRIDIINSLKLKNPYVT---I---ASFDRKNLFYGVKV-INR-----GQSFVDELVQEILKSV-AGAG 229 (374)
Q Consensus 163 ~~i~~SaT~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~-~~~~ 229 (374)
.+|++|||+.+ ...+...+++...... . .++-..+....+.. .+. ......++...+.+-. ...+
T Consensus 317 svIltSaTL~~--~~~~~~~lGl~~~~~~~~~~~~~~spf~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~~~g 394 (551)
T 3crv_A 317 SIILMSGTLPP--REYMEKVWGIKRNMLYLDVEREIQKRVSGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQAKA 394 (551)
T ss_dssp EEEEEESSCCC--HHHHHHTSCCCSCEEEEEHHHHTTSCCSCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHHCSS
T ss_pred eEEEEeeCCCc--HHHHHHHhCCCCccccccceeecCCcCCCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHhCCC
Confidence 78999999987 3356777887633321 1 11111222111110 111 1112233333332221 2467
Q ss_pred cEEEEecchhHHHHHHHHHHHcCCceeeeec-CCChHHHHHHHHhhhcCCeeEEEEe--cccccccccc---C--ccEEE
Q 037567 230 SIIVYCMTIKDVEEISKALKQLGVKAGTYHG-QMGSKAREEAHRLFIRDEIRVMVAT--MAFGMGIDKP---D--VRHVI 301 (374)
Q Consensus 230 ~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~r~~~~~~f~~g~~~ilv~t--~~~~~G~d~~---~--~~~vi 301 (374)
.++||++|...++.+++. .+..+ +..+ +++ +...++.|+.+.-.||+++ ...++|+|+| + ++.||
T Consensus 395 ~~lvlF~Sy~~l~~v~~~---~~~~v-~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~vi 467 (551)
T 3crv_A 395 NVLVVFPSYEIMDRVMSR---ISLPK-YVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDVV 467 (551)
T ss_dssp EEEEEESCHHHHHHHHTT---CCSSE-EECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEEE
T ss_pred CEEEEecCHHHHHHHHHh---cCCcE-EEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCCcceeEEE
Confidence 899999999999999873 23332 3333 233 4557777854334799998 5999999999 4 78899
Q ss_pred EECCCCC------------------------------hhHHHHhhccCCCCCCceEEEEEeecc
Q 037567 302 HYGCPKT------------------------------LESYYQESGRCGRDGIASVCWLYYARS 335 (374)
Q Consensus 302 ~~~~p~s------------------------------~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 335 (374)
..+.|.. ...+.|.+||+-|..++.-++++++..
T Consensus 468 I~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 531 (551)
T 3crv_A 468 IVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKR 531 (551)
T ss_dssp EESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGG
T ss_pred EEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehh
Confidence 8887741 112369999999986665566666553
No 88
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.88 E-value=3.3e-23 Score=171.49 Aligned_cols=159 Identities=15% Similarity=0.095 Sum_probs=102.7
Q ss_pred CCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc---------cCCcEEEEcchHHHHHH-HHHHHHHc---C
Q 037567 11 YSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV---------TGKTALVVSPLISLMQD-QVMSLKQR---G 77 (374)
Q Consensus 11 ~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~---------~~~~~lil~P~~~l~~q-~~~~~~~~---~ 77 (374)
..+|+|+|.++++.+.+++++++.+|||+|||+++++++.. ...+++|++|+++|+.| +.+.+..+ +
T Consensus 31 ~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~ 110 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKW 110 (216)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTTT
T ss_pred CCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhccC
Confidence 34799999999999999999999999999999998877664 16789999999999999 77777765 4
Q ss_pred CceEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHH----HHHhcCccEEEEeccchhhcccCcchHHHHHHH
Q 037567 78 INAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS----KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLD 153 (374)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~----~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~ 153 (374)
..+....++......... ....++|+|+||+++...+..... ...+.++++||+||||++...+.........+.
T Consensus 111 ~~v~~~~g~~~~~~~~~~-~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~ 189 (216)
T 3b6e_A 111 YRVIGLSGDTQLKISFPE-VVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLM 189 (216)
T ss_dssp SCEEECCC---CCCCHHH-HHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHHHH
T ss_pred ceEEEEeCCcccchhHHh-hccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHHHH
Confidence 556555554333222211 123479999999998665443211 033567899999999999754332211111111
Q ss_pred HHHHh----------cCCCCeeEEEee
Q 037567 154 KLRTF----------LLGVPFVALTAT 170 (374)
Q Consensus 154 ~~~~~----------~~~~~~i~~SaT 170 (374)
..... .+..++++||||
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 190 QKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HhcccccccccccCCCCcceEEEeecC
Confidence 11110 146789999998
No 89
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.87 E-value=3.1e-22 Score=167.04 Aligned_cols=140 Identities=20% Similarity=0.201 Sum_probs=110.2
Q ss_pred CCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHHcCCc-eEEcCCCCCchh
Q 037567 13 VFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGIN-AEFLGSAQTDSS 91 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~-~~~~~~~~~~~~ 91 (374)
+|+++|.+++..+.+++++++++|||+|||.+++.++...+.+++|++|+++|+.||.+++.+++.. +..+.+....
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~~-- 170 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-- 170 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCBC--
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCCC--
Confidence 6999999999999999899999999999999988777777889999999999999999999998887 6666554321
Q ss_pred hhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCeeEEEeec
Q 037567 92 VQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATA 171 (374)
Q Consensus 92 ~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 171 (374)
..+|+|+|++.+..... .....+++||+||+|++.+.. ...+...++..++++|||||
T Consensus 171 --------~~~i~v~T~~~l~~~~~-----~~~~~~~llIiDEaH~l~~~~---------~~~i~~~~~~~~~l~LSATp 228 (237)
T 2fz4_A 171 --------LKPLTVSTYDSAYVNAE-----KLGNRFMLLIFDEVHHLPAES---------YVQIAQMSIAPFRLGLTATF 228 (237)
T ss_dssp --------CCSEEEEEHHHHHHTHH-----HHTTTCSEEEEECSSCCCTTT---------HHHHHHTCCCSEEEEEEESC
T ss_pred --------cCCEEEEeHHHHHhhHH-----HhcccCCEEEEECCccCCChH---------HHHHHHhccCCEEEEEecCC
Confidence 35899999998754322 223568999999999987533 23344555677899999999
Q ss_pred CcccH
Q 037567 172 TEKVR 176 (374)
Q Consensus 172 ~~~~~ 176 (374)
...+.
T Consensus 229 ~r~D~ 233 (237)
T 2fz4_A 229 EREDG 233 (237)
T ss_dssp C----
T ss_pred CCCCC
Confidence 87654
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.86 E-value=2.3e-22 Score=173.13 Aligned_cols=145 Identities=15% Similarity=0.124 Sum_probs=109.1
Q ss_pred CCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc----cCCcEEEEcchHHHHHHHHHHHHHcCCc----eEEcC
Q 037567 13 VFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV----TGKTALVVSPLISLMQDQVMSLKQRGIN----AEFLG 84 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~----~~~~~lil~P~~~l~~q~~~~~~~~~~~----~~~~~ 84 (374)
+|+|+|.++++.++++++.++.+|||+|||+++++++.. ...++||++|+++|++||.+++.+++.. ...+.
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~ 192 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECS
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEe
Confidence 699999999999998888999999999999988766553 2458999999999999999999988542 23333
Q ss_pred CCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhc-CCCC
Q 037567 85 SAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFL-LGVP 163 (374)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 163 (374)
++..... ......+|+|+||+.+..... .....++++|+||||++.. ..+..+...+ ...+
T Consensus 193 ~~~~~~~----~~~~~~~I~v~T~~~l~~~~~-----~~~~~~~~vIiDEaH~~~~---------~~~~~il~~~~~~~~ 254 (282)
T 1rif_A 193 GGASKDD----KYKNDAPVVVGTWQTVVKQPK-----EWFSQFGMMMNDECHLATG---------KSISSIISGLNNCMF 254 (282)
T ss_dssp TTCSSTT----CCCTTCSEEEECHHHHTTSCG-----GGGGGEEEEEEETGGGCCH---------HHHHHHTTTCTTCCE
T ss_pred CCCcchh----hhccCCcEEEEchHHHHhhHH-----HHHhhCCEEEEECCccCCc---------ccHHHHHHHhhcCCe
Confidence 3322211 222457899999998865532 2356789999999999874 2344444444 4788
Q ss_pred eeEEEeecCccc
Q 037567 164 FVALTATATEKV 175 (374)
Q Consensus 164 ~i~~SaT~~~~~ 175 (374)
+++|||||++..
T Consensus 255 ~l~lSATp~~~~ 266 (282)
T 1rif_A 255 KFGLSGSLRDGK 266 (282)
T ss_dssp EEEECSSCCTTS
T ss_pred EEEEeCCCCCcc
Confidence 999999998764
No 91
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.83 E-value=3e-19 Score=168.67 Aligned_cols=164 Identities=13% Similarity=0.125 Sum_probs=96.9
Q ss_pred eeEEEeecCcccHHHHHHhcCCCCCeEE-Eecc-CCCceeEEEE-eec-----CCcchHHHH---HHHHHHhhcCCCcEE
Q 037567 164 FVALTATATEKVRIDIINSLKLKNPYVT-IASF-DRKNLFYGVK-VIN-----RGQSFVDEL---VQEILKSVAGAGSII 232 (374)
Q Consensus 164 ~i~~SaT~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~-~~~-----~~~~~~~~~---~~~~~~~~~~~~~~l 232 (374)
+|++|||+.+ ...+...+|+. .... ..+. +..+....+. ..+ .......++ +..+.+. ..++++
T Consensus 378 ~il~SaTL~p--~~~~~~~lGl~-~~~~~~~spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~--~~g~~l 452 (620)
T 4a15_A 378 TIHMSGTLDP--FDFYSDITGFE-IPFKKIGEIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILK--VKKNTI 452 (620)
T ss_dssp EEEEESSCCS--HHHHHHHHCCC-CCEEECCCCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHH--HCSCEE
T ss_pred EEEEccCCCc--HHHHHHHhCCC-ceeeecCCCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHh--CCCCEE
Confidence 5899999987 33567778876 2222 2211 2222211111 011 111122222 3333333 467799
Q ss_pred EEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEec--cccccccccC--ccEEEEECCCCC
Q 037567 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM--AFGMGIDKPD--VRHVIHYGCPKT 308 (374)
Q Consensus 233 Vf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~--~~~~G~d~~~--~~~vi~~~~p~s 308 (374)
||++|....+.+++.++. ...- ...+++..++..+++.|. ++-.||+++. .+++|+|+|+ ++.||..+.|..
T Consensus 453 vlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp 528 (620)
T 4a15_A 453 VYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFP 528 (620)
T ss_dssp EEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCC
T ss_pred EEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCC
Confidence 999999999999988862 2211 333445668999999999 7778999985 9999999998 678998888742
Q ss_pred -----------------------------hhHHHHhhccCCCCCCceEEEEEeeccC
Q 037567 309 -----------------------------LESYYQESGRCGRDGIASVCWLYYARSN 336 (374)
Q Consensus 309 -----------------------------~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 336 (374)
...+.|.+||+-|...+.-+++++++.-
T Consensus 529 ~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R~ 585 (620)
T 4a15_A 529 RPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKRA 585 (620)
T ss_dssp CCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECGGG
T ss_pred CCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEccch
Confidence 1224799999999866655666665543
No 92
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.80 E-value=6.8e-20 Score=153.14 Aligned_cols=159 Identities=14% Similarity=0.056 Sum_probs=109.8
Q ss_pred CCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccc----c----CCcEEEEcchHHHHHHHHHHHHHc-CCceEE
Q 037567 12 SVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV----T----GKTALVVSPLISLMQDQVMSLKQR-GINAEF 82 (374)
Q Consensus 12 ~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~----~----~~~~lil~P~~~l~~q~~~~~~~~-~~~~~~ 82 (374)
-.++++|.++++.+.+++++++.||||||||..+.++++. . ..++++++|+++++.|+.+.+... +.....
T Consensus 60 ~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~ 139 (235)
T 3llm_A 60 LPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGK 139 (235)
T ss_dssp SGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTS
T ss_pred CChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCc
Confidence 3589999999999999999999999999999876655443 1 337999999999999998888653 221110
Q ss_pred cCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchh-hcccCcchHHHHHHHHHHHhcCC
Q 037567 83 LGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCI-SEWGHDFRLEYKQLDKLRTFLLG 161 (374)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~-~~~~~~~~~~~~~~~~~~~~~~~ 161 (374)
..+... ..........++|+|+||+++.+.+.. .+.+++++|+||+|.. .+.+ .....+..+....++
T Consensus 140 ~~g~~~--~~~~~~~~~~~~Ivv~Tpg~l~~~l~~-----~l~~~~~lVlDEah~~~~~~~----~~~~~l~~i~~~~~~ 208 (235)
T 3llm_A 140 SCGYSV--RFESILPRPHASIMFCTVGVLLRKLEA-----GIRGISHVIVDEIHERDINTD----FLLVVLRDVVQAYPE 208 (235)
T ss_dssp SEEEEE--TTEEECCCSSSEEEEEEHHHHHHHHHH-----CCTTCCEEEECCTTSCCHHHH----HHHHHHHHHHHHCTT
T ss_pred eEEEee--chhhccCCCCCeEEEECHHHHHHHHHh-----hhcCCcEEEEECCccCCcchH----HHHHHHHHHHhhCCC
Confidence 000000 001111124578999999988765433 3688999999999974 3222 222345566666678
Q ss_pred CCeeEEEeecCcccHHHHHHhcC
Q 037567 162 VPFVALTATATEKVRIDIINSLK 184 (374)
Q Consensus 162 ~~~i~~SaT~~~~~~~~~~~~~~ 184 (374)
.++++||||++... +..+++
T Consensus 209 ~~~il~SAT~~~~~---~~~~~~ 228 (235)
T 3llm_A 209 VRIVLMSATIDTSM---FCEYFF 228 (235)
T ss_dssp SEEEEEECSSCCHH---HHHHTT
T ss_pred CeEEEEecCCCHHH---HHHHcC
Confidence 89999999998765 344443
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.77 E-value=1.4e-18 Score=147.22 Aligned_cols=119 Identities=16% Similarity=0.209 Sum_probs=89.9
Q ss_pred HHHHHHHHh-hcCCCcEEEEecchhHHHHHHHHHHHc-CCceeeeecCCChHHHHHHHHhhhcC-Cee-EEEEecccccc
Q 037567 216 ELVQEILKS-VAGAGSIIVYCMTIKDVEEISKALKQL-GVKAGTYHGQMGSKAREEAHRLFIRD-EIR-VMVATMAFGMG 291 (374)
Q Consensus 216 ~~~~~~~~~-~~~~~~~lVf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-ilv~t~~~~~G 291 (374)
..+.+++.. ...+.++||||++...++.+.+.|.+. |+.+..+||+++..+|+.+++.|+++ +.+ +|++|.++++|
T Consensus 99 ~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~G 178 (271)
T 1z5z_A 99 IRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFG 178 (271)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCC
T ss_pred HHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCC
Confidence 334444333 346889999999999999999999885 99999999999999999999999998 666 68899999999
Q ss_pred ccccCccEEEEECCCCChhHHHHhhccCCCCCCceEE--EEEeec
Q 037567 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVC--WLYYAR 334 (374)
Q Consensus 292 ~d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~--~~~~~~ 334 (374)
+|++.+++||++++|+++..+.|++||++|.|+.+.+ +.++..
T Consensus 179 lnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~ 223 (271)
T 1z5z_A 179 INLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISV 223 (271)
T ss_dssp CCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEET
T ss_pred cCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeC
Confidence 9999999999999999999999999999999997765 444444
No 94
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.72 E-value=3e-08 Score=94.81 Aligned_cols=72 Identities=17% Similarity=0.176 Sum_probs=57.7
Q ss_pred CCchhHHHHHHHHHcCC-CEEEEccCCCCchhhhhc---cccccCCcEEEEcchHHHHHHHHHHHHHcCCceEEcC
Q 037567 13 VFRPYQKDVIQRIIEKR-DCLVVMATGSGKSLCYQL---PPLVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLG 84 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~~-~~l~~a~tGsGKT~~~~l---~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 84 (374)
.+.+-|.+|+..++..+ -.+|+||+|||||.+..- .++.++.++|+++||...++++.+.+...+.++..++
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~ilRlG 264 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRLG 264 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCCEEECS
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCceEEec
Confidence 57889999999988765 468999999999966432 2334688999999999999999999988776655443
No 95
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.68 E-value=4.9e-08 Score=92.25 Aligned_cols=61 Identities=18% Similarity=0.196 Sum_probs=50.4
Q ss_pred chhHHHHHHHHHcCCCEEEEccCCCCch--hhhhccccc-----cCCcEEEEcchHHHHHHHHHHHHH
Q 037567 15 RPYQKDVIQRIIEKRDCLVVMATGSGKS--LCYQLPPLV-----TGKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 15 ~~~Q~~~~~~~~~~~~~l~~a~tGsGKT--~~~~l~~~~-----~~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
.+.|.++++.++.++.+++.|++||||| +.+++..+. .+.++++++||..++.++.+.+..
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~ 218 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK 218 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHH
Confidence 6889999999999999999999999999 444444443 356899999999999998877654
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.53 E-value=2.5e-07 Score=87.87 Aligned_cols=71 Identities=14% Similarity=0.178 Sum_probs=57.1
Q ss_pred CCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcc---ccc-cCCcEEEEcchHHHHHHHHHHHHHcCCceE
Q 037567 11 YSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP---PLV-TGKTALVVSPLISLMQDQVMSLKQRGINAE 81 (374)
Q Consensus 11 ~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~---~~~-~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 81 (374)
+..+.+.|.+|+..++.+...++.||+|+|||.+.... +.. .+.++++++||...+++..+.+...+..+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~~~~~ 252 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVV 252 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTTCCEE
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcCCeEE
Confidence 34688999999999888778899999999999654322 122 577999999999999999999987766543
No 97
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.42 E-value=1.7e-06 Score=79.10 Aligned_cols=65 Identities=12% Similarity=0.176 Sum_probs=48.7
Q ss_pred cCCCCCchhHHHHHHHHHcC-----CCEEEEccCCCCchhhhhcc--cc-ccCC-cEEEEcchHHHHHHHHHHH
Q 037567 9 FGYSVFRPYQKDVIQRIIEK-----RDCLVVMATGSGKSLCYQLP--PL-VTGK-TALVVSPLISLMQDQVMSL 73 (374)
Q Consensus 9 ~~~~~~~~~Q~~~~~~~~~~-----~~~l~~a~tGsGKT~~~~l~--~~-~~~~-~~lil~P~~~l~~q~~~~~ 73 (374)
+.|..+++-|.+++..+... ..+++.|++|||||.+.... .+ ..+. .+++++||...+..+.+.+
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh
Confidence 57889999999999977542 37899999999999653211 11 2343 7999999998888766654
No 98
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.42 E-value=6.7e-07 Score=86.91 Aligned_cols=71 Identities=14% Similarity=0.252 Sum_probs=57.3
Q ss_pred CCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccc---cc-cCCcEEEEcchHHHHHHHHHHHHHcCCceE
Q 037567 11 YSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPP---LV-TGKTALVVSPLISLMQDQVMSLKQRGINAE 81 (374)
Q Consensus 11 ~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~---~~-~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 81 (374)
+..+.+.|.+|+..++.+...+|.||+|||||.+....+ .. .+.++++++||...++++.+.+...+..+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g~~il 432 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKVV 432 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHTTCCEE
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhhCccEE
Confidence 456789999999999887778999999999996543221 12 578999999999999999999988765543
No 99
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.38 E-value=7.6e-07 Score=86.43 Aligned_cols=71 Identities=14% Similarity=0.178 Sum_probs=56.9
Q ss_pred CCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcc---ccc-cCCcEEEEcchHHHHHHHHHHHHHcCCceE
Q 037567 11 YSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP---PLV-TGKTALVVSPLISLMQDQVMSLKQRGINAE 81 (374)
Q Consensus 11 ~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~---~~~-~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 81 (374)
...+.+.|.+|+..++.+...++.||+|+|||.+.... +.. .+.++++++||...++++.+.+...+..+.
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~g~~vv 428 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVV 428 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTTTCCEE
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHhCcceE
Confidence 34578999999999988878899999999999653321 122 478999999999999999999987776543
No 100
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.27 E-value=7.7e-07 Score=83.31 Aligned_cols=61 Identities=15% Similarity=0.090 Sum_probs=49.0
Q ss_pred CCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhc--c-ccccCCcEEEEcchHHHHHHHHHHH
Q 037567 13 VFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQL--P-PLVTGKTALVVSPLISLMQDQVMSL 73 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l--~-~~~~~~~~lil~P~~~l~~q~~~~~ 73 (374)
.+.+.|.+++..+..++.+++.|++|+|||.+... . +...+.++++++||...+....+..
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhh
Confidence 47899999999999999999999999999965321 1 1235788999999998888776543
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.11 E-value=5.8e-05 Score=72.31 Aligned_cols=63 Identities=14% Similarity=0.167 Sum_probs=49.3
Q ss_pred CCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccc---cc----cCCcEEEEcchHHHHHHHHHHHHHc
Q 037567 12 SVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPP---LV----TGKTALVVSPLISLMQDQVMSLKQR 76 (374)
Q Consensus 12 ~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~---~~----~~~~~lil~P~~~l~~q~~~~~~~~ 76 (374)
..+++-|.+++. .....++|.|++|||||.+..--+ +. ...++|++++|+..+.++.+.+...
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 468999999997 346789999999999996643221 11 2368999999999999999888754
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.72 E-value=0.00022 Score=60.63 Aligned_cols=127 Identities=11% Similarity=0.024 Sum_probs=87.8
Q ss_pred HHHHHHHHHhh-cCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEecccccccc
Q 037567 215 DELVQEILKSV-AGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGID 293 (374)
Q Consensus 215 ~~~~~~~~~~~-~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G~d 293 (374)
-.++..++... ..+.+++||++.....+-+...+...+++...+.|.... .+++. .+....+.+.|...+-|+|
T Consensus 111 f~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~-~~~k~----~~~~~~i~Lltsag~~gin 185 (328)
T 3hgt_A 111 FSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIK-SAAAA----NDFSCTVHLFSSEGINFTK 185 (328)
T ss_dssp HHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCCCTTT
T ss_pred HHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchh-hhhhc----ccCCceEEEEECCCCCCcC
Confidence 34455554443 356799999999999999999999999999999988443 32221 2345556666776666776
Q ss_pred -----ccCccEEEEECCCCChhHH-HHhhccCCCCC----CceEEEEEeeccCCCcccceecc
Q 037567 294 -----KPDVRHVIHYGCPKTLESY-YQESGRCGRDG----IASVCWLYYARSNFAKGDFYCGE 346 (374)
Q Consensus 294 -----~~~~~~vi~~~~p~s~~~~-~Q~~GR~~R~~----~~g~~~~~~~~~~~~~~~~~~~~ 346 (374)
+...+.||.+|+.+++..- +|.+-|+.|.+ +.-.++-+++....++....+.+
T Consensus 186 ~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~~~ 248 (328)
T 3hgt_A 186 YPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFFGK 248 (328)
T ss_dssp SCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHHHH
T ss_pred cccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHccC
Confidence 5678999999999999875 89888988873 34467778887777776666543
No 103
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.69 E-value=4e-05 Score=68.36 Aligned_cols=44 Identities=16% Similarity=-0.001 Sum_probs=34.5
Q ss_pred EEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHHc
Q 037567 31 CLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQR 76 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 76 (374)
.++.|++|+|||....-.+ . ..+.++++|+++++++|.+.+...
T Consensus 164 ~~I~G~aGsGKTt~I~~~~-~-~~~~lVlTpT~~aa~~l~~kl~~~ 207 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRV-N-FEEDLILVPGRQAAEMIRRRANAS 207 (446)
T ss_dssp EEEEECTTSCHHHHHHHHC-C-TTTCEEEESCHHHHHHHHHHHTTT
T ss_pred EEEEcCCCCCHHHHHHHHh-c-cCCeEEEeCCHHHHHHHHHHhhhc
Confidence 4789999999997653322 2 267899999999999999888543
No 104
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.63 E-value=0.00028 Score=62.20 Aligned_cols=64 Identities=19% Similarity=0.219 Sum_probs=49.6
Q ss_pred CCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccc-----cccCCcEEEEcchHHHHHHHHHHHHHc
Q 037567 13 VFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPP-----LVTGKTALVVSPLISLMQDQVMSLKQR 76 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~-----~~~~~~~lil~P~~~l~~q~~~~~~~~ 76 (374)
.+.|+|...+..+...+.+++..+-+.|||.+....+ ...+..+++++|+...+..+++.+..+
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~m 231 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQA 231 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 5899999999887655668999999999996543222 234668999999999998888776643
No 105
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.49 E-value=0.0007 Score=63.88 Aligned_cols=64 Identities=19% Similarity=0.215 Sum_probs=50.0
Q ss_pred CCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcc-----ccccCCcEEEEcchHHHHHHHHHHHHHc
Q 037567 13 VFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP-----PLVTGKTALVVSPLISLMQDQVMSLKQR 76 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~-----~~~~~~~~lil~P~~~l~~q~~~~~~~~ 76 (374)
.++|+|...+..+...+..++..+-|+|||.+.... +...+.+++++.|+...+..++..++..
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~ 231 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQA 231 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 489999999988865677899999999999654322 1224568999999999999888777654
No 106
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.45 E-value=0.00025 Score=55.97 Aligned_cols=36 Identities=19% Similarity=0.060 Sum_probs=25.4
Q ss_pred CCCEEEEccCCCCchhhhhcccc---ccCCcEEEEcchH
Q 037567 28 KRDCLVVMATGSGKSLCYQLPPL---VTGKTALVVSPLI 63 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~~---~~~~~~lil~P~~ 63 (374)
++-.++.||+|+|||...+-.+. ..+.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 44568899999999976532222 2567899998884
No 107
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.37 E-value=0.00023 Score=56.84 Aligned_cols=34 Identities=24% Similarity=0.132 Sum_probs=24.1
Q ss_pred EEEEccCCCCchhhhhcccc---ccCCcEEEEcchHH
Q 037567 31 CLVVMATGSGKSLCYQLPPL---VTGKTALVVSPLIS 64 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~~l~~~---~~~~~~lil~P~~~ 64 (374)
.++.+++|+|||...+-.+. ..+.+++++.|...
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d 67 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID 67 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC--
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence 46899999999976543332 35889999999864
No 108
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.32 E-value=0.00082 Score=52.74 Aligned_cols=57 Identities=16% Similarity=0.071 Sum_probs=34.3
Q ss_pred chhHHHHHHHHH---------cCCCEEEEccCCCCchhhhhcc--cc--ccCCcEEEEcchHHHHHHHHHH
Q 037567 15 RPYQKDVIQRII---------EKRDCLVVMATGSGKSLCYQLP--PL--VTGKTALVVSPLISLMQDQVMS 72 (374)
Q Consensus 15 ~~~Q~~~~~~~~---------~~~~~l~~a~tGsGKT~~~~l~--~~--~~~~~~lil~P~~~l~~q~~~~ 72 (374)
.+.|.+++..+. .++.+++.||+|+|||..+... .+ ..+..+++ .+..++..+....
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~-~~~~~~~~~~~~~ 85 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF-FDTKDLIFRLKHL 85 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE-EEHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE-EEHHHHHHHHHHH
Confidence 346888887664 2577899999999999654222 11 22434444 3444555554443
No 109
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.21 E-value=0.00018 Score=56.88 Aligned_cols=36 Identities=22% Similarity=0.046 Sum_probs=25.7
Q ss_pred CCCEEEEccCCCCchhhhhcccc---ccCCcEEEEcchH
Q 037567 28 KRDCLVVMATGSGKSLCYQLPPL---VTGKTALVVSPLI 63 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~~---~~~~~~lil~P~~ 63 (374)
++-.++.||+|+|||...+-.+. ..+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 34457899999999976543332 2588999999984
No 110
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.14 E-value=0.001 Score=53.08 Aligned_cols=37 Identities=19% Similarity=-0.005 Sum_probs=24.9
Q ss_pred CCCEEEEccCCCCchhhhhcccc---ccCCcEEEEcchHH
Q 037567 28 KRDCLVVMATGSGKSLCYQLPPL---VTGKTALVVSPLIS 64 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~~---~~~~~~lil~P~~~ 64 (374)
|.-.++.+|+|+|||...+-.+. ..+.+++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccC
Confidence 34458899999999965432322 24788999999764
No 111
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.0011 Score=58.39 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=22.9
Q ss_pred CCCEEEEccCCCCchhhhhccccccCCcEEEEcc
Q 037567 28 KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P 61 (374)
.+.+++.||+|+|||+.+-..+-..+...+.+..
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~ 215 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSG 215 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEh
Confidence 4789999999999998654443334444444443
No 112
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.05 E-value=0.0027 Score=47.65 Aligned_cols=19 Identities=11% Similarity=0.022 Sum_probs=16.3
Q ss_pred cCCCEEEEccCCCCchhhh
Q 037567 27 EKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~ 45 (374)
...++++.||+|+|||..+
T Consensus 26 ~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp CSSCEEEEEETTCCHHHHH
T ss_pred CCCcEEEECCCCccHHHHH
Confidence 4678999999999999754
No 113
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.93 E-value=0.0054 Score=53.10 Aligned_cols=43 Identities=19% Similarity=0.152 Sum_probs=25.3
Q ss_pred CCEEEEccCCCCchhhhhcccc---ccCCcEEEEcchHHHHHHHHHH
Q 037567 29 RDCLVVMATGSGKSLCYQLPPL---VTGKTALVVSPLISLMQDQVMS 72 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~~~---~~~~~~lil~P~~~l~~q~~~~ 72 (374)
..+++.||+|+|||..+-..+- ..+.+++++... .+..+....
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~-~~~~~~~~~ 83 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD-DFAQAMVEH 83 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH-HHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH-HHHHHHHHH
Confidence 5789999999999965432221 124556665443 444443333
No 114
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.92 E-value=0.0023 Score=60.21 Aligned_cols=115 Identities=21% Similarity=0.213 Sum_probs=72.2
Q ss_pred CCchhHHHHHHHHHc--CCCEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCch
Q 037567 13 VFRPYQKDVIQRIIE--KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDS 90 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~--~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~ 90 (374)
.++.-|.+++..+.+ ....++.|+-|.|||.+.-+.+..-...++|.+|+.+-+....+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~~~~~vtAP~~~a~~~l~~~~~~--------------- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIAGRAIVTAPAKASTDVLAQFAGE--------------- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSSSCEEEECSSCCSCHHHHHHHGG---------------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHHhCcEEECCCHHHHHHHHHHhhC---------------
Confidence 578899999999887 345689999999999554333332234579999998766644333221
Q ss_pred hhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCeeEEEee
Q 037567 91 SVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTAT 170 (374)
Q Consensus 91 ~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 170 (374)
.+-+..|+.+. ......+++|||||-.+.- ..+..+.. ..+.++||.|
T Consensus 240 -----------~i~~~~Pd~~~---------~~~~~~dlliVDEAAaIp~---------pll~~ll~---~~~~v~~~tT 287 (671)
T 2zpa_A 240 -----------KFRFIAPDALL---------ASDEQADWLVVDEAAAIPA---------PLLHQLVS---RFPRTLLTTT 287 (671)
T ss_dssp -----------GCCBCCHHHHH---------HSCCCCSEEEEETGGGSCH---------HHHHHHHT---TSSEEEEEEE
T ss_pred -----------CeEEeCchhhh---------hCcccCCEEEEEchhcCCH---------HHHHHHHh---hCCeEEEEec
Confidence 01112222110 1223578999999987753 33333333 5568999999
Q ss_pred cCcc
Q 037567 171 ATEK 174 (374)
Q Consensus 171 ~~~~ 174 (374)
....
T Consensus 288 v~GY 291 (671)
T 2zpa_A 288 VQGY 291 (671)
T ss_dssp BSST
T ss_pred CCcC
Confidence 7653
No 115
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.86 E-value=0.0029 Score=54.78 Aligned_cols=31 Identities=23% Similarity=0.196 Sum_probs=20.1
Q ss_pred CCEEEEccCCCCchhhhhccccccCCcEEEE
Q 037567 29 RDCLVVMATGSGKSLCYQLPPLVTGKTALVV 59 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil 59 (374)
+.+++.||+|+|||..+-..+-..+..++.+
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~~~~~~~v 82 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEANSTFFSV 82 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHHTCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence 4689999999999976543332334444443
No 116
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.73 E-value=0.0034 Score=54.30 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=15.2
Q ss_pred CCEEEEccCCCCchhhhh
Q 037567 29 RDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~ 46 (374)
+.+++.||+|+|||..+-
T Consensus 46 ~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp SEEEEESSSSSCHHHHHH
T ss_pred ceEEEECCCCccHHHHHH
Confidence 568999999999997643
No 117
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.70 E-value=0.0016 Score=59.01 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=14.5
Q ss_pred CEEEEccCCCCchhhhh
Q 037567 30 DCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~ 46 (374)
+++++||+|+|||..+-
T Consensus 52 ~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAE 68 (447)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 58999999999997643
No 118
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.69 E-value=0.0051 Score=53.48 Aligned_cols=32 Identities=16% Similarity=0.390 Sum_probs=24.9
Q ss_pred CchhHHHHHHHHHc----CC---CEEEEccCCCCchhhh
Q 037567 14 FRPYQKDVIQRIIE----KR---DCLVVMATGSGKSLCY 45 (374)
Q Consensus 14 ~~~~Q~~~~~~~~~----~~---~~l~~a~tGsGKT~~~ 45 (374)
++|+|.+++..+.+ ++ .+++.||+|+|||..+
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHH
Confidence 57999999877653 32 3799999999999654
No 119
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.63 E-value=0.0026 Score=53.98 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=15.7
Q ss_pred CCCEEEEccCCCCchhhhh
Q 037567 28 KRDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~ 46 (374)
.+.+++.||+|+|||..+-
T Consensus 51 ~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CSEEEEESSSSSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4678999999999997543
No 120
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.54 E-value=0.0023 Score=57.25 Aligned_cols=33 Identities=24% Similarity=0.269 Sum_probs=21.8
Q ss_pred CCCEEEEccCCCCchhhhhccccccCCcEEEEc
Q 037567 28 KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~ 60 (374)
.+.+++.||+|+|||+.+-..+-..+...+.+.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~ 247 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTNATFLKLA 247 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 367899999999999865433333344444443
No 121
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.53 E-value=0.0024 Score=48.30 Aligned_cols=18 Identities=28% Similarity=0.163 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCCchhh
Q 037567 27 EKRDCLVVMATGSGKSLC 44 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~ 44 (374)
.+..+++.||+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467789999999999964
No 122
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.50 E-value=0.0053 Score=53.89 Aligned_cols=31 Identities=23% Similarity=0.196 Sum_probs=20.1
Q ss_pred CCEEEEccCCCCchhhhhccccccCCcEEEE
Q 037567 29 RDCLVVMATGSGKSLCYQLPPLVTGKTALVV 59 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil 59 (374)
+.+++.||+|+|||..+-..+-..+..++.+
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~~~~~~v 115 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEANSTFFSV 115 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEE
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 5689999999999976543332334444443
No 123
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.46 E-value=0.013 Score=53.06 Aligned_cols=43 Identities=16% Similarity=0.131 Sum_probs=25.0
Q ss_pred CCEEEEccCCCCchhhhhcccc---c--cCCcEEEEcchHHHHHHHHHH
Q 037567 29 RDCLVVMATGSGKSLCYQLPPL---V--TGKTALVVSPLISLMQDQVMS 72 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~~~---~--~~~~~lil~P~~~l~~q~~~~ 72 (374)
+.+++.||+|+|||..+...+- . .+.+++++... .+..+....
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~-~~~~~~~~~ 178 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE-KFLNDLVDS 178 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH-HHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH-HHHHHHHHH
Confidence 5789999999999965432211 1 14555555443 344444333
No 124
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.45 E-value=0.0048 Score=54.91 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=20.5
Q ss_pred CCCEEEEccCCCCchhhhhccccccCCcEEEE
Q 037567 28 KRDCLVVMATGSGKSLCYQLPPLVTGKTALVV 59 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil 59 (374)
.+.+++.||+|+|||..+-..+...+..++.+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v 179 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNI 179 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence 36789999999999976543333333333333
No 125
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.44 E-value=0.0075 Score=49.43 Aligned_cols=18 Identities=11% Similarity=0.043 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
+..+++.||+|+|||..+
T Consensus 52 ~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567899999999999654
No 126
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.43 E-value=0.0094 Score=50.95 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=20.4
Q ss_pred CCCEEEEccCCCCchhhhhccccccCCcEEEE
Q 037567 28 KRDCLVVMATGSGKSLCYQLPPLVTGKTALVV 59 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil 59 (374)
++.+++.||+|+|||..+-..+-..+...+.+
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v 80 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQANFISI 80 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhCCCEEEE
Confidence 46789999999999976533332233334433
No 127
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.43 E-value=0.011 Score=53.59 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=15.3
Q ss_pred CCEEEEccCCCCchhhhh
Q 037567 29 RDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~ 46 (374)
+.+++.||+|+|||..+-
T Consensus 168 ~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 578999999999997653
No 128
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.39 E-value=0.017 Score=48.06 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=14.9
Q ss_pred CCEEEEccCCCCchhhhh
Q 037567 29 RDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~ 46 (374)
+.+++.||+|+|||..+-
T Consensus 40 ~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468999999999997643
No 129
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.36 E-value=0.0088 Score=46.74 Aligned_cols=18 Identities=22% Similarity=0.349 Sum_probs=14.9
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
...+++.||+|+|||..+
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 357899999999999654
No 130
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=96.34 E-value=0.016 Score=56.13 Aligned_cols=91 Identities=11% Similarity=0.016 Sum_probs=72.2
Q ss_pred chHHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHc----CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEec-
Q 037567 212 SFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQL----GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM- 286 (374)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~- 286 (374)
.+....+..++.....+.+++|.+|+..-+.+.++.+++. ++++..+||+.+..++...++.+.+|+.+|+|+|+
T Consensus 401 GKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ 480 (780)
T 1gm5_A 401 GKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHA 480 (780)
T ss_dssp SHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTT
T ss_pred CHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 3334444445555556789999999999998888887763 78899999999999999999999999999999998
Q ss_pred cccccccccCccEEEE
Q 037567 287 AFGMGIDKPDVRHVIH 302 (374)
Q Consensus 287 ~~~~G~d~~~~~~vi~ 302 (374)
.+...+++.++..||.
T Consensus 481 ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 481 LIQEDVHFKNLGLVII 496 (780)
T ss_dssp HHHHCCCCSCCCEEEE
T ss_pred HHhhhhhccCCceEEe
Confidence 4445667777887774
No 131
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.0057 Score=52.42 Aligned_cols=18 Identities=17% Similarity=-0.009 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
+.++++.||||+|||.+.
T Consensus 45 ~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLV 62 (318)
T ss_dssp CCEEEEECCCSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467899999999999764
No 132
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.0032 Score=55.83 Aligned_cols=32 Identities=25% Similarity=0.278 Sum_probs=21.1
Q ss_pred CCCEEEEccCCCCchhhhhccccccCCcEEEE
Q 037567 28 KRDCLVVMATGSGKSLCYQLPPLVTGKTALVV 59 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil 59 (374)
.+.+++.||+|+|||+.+-..+-..+...+.+
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence 36789999999999986543333334444443
No 133
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.29 E-value=0.0027 Score=56.90 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=22.0
Q ss_pred CCCEEEEccCCCCchhhhhccccccCCcEEEEc
Q 037567 28 KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~ 60 (374)
.+.+++.||+|+|||+.+-..+-..+...+.+.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~ 247 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIGANFIFSP 247 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 367899999999999865443333344444443
No 134
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.27 E-value=0.0027 Score=56.85 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=21.5
Q ss_pred CCCEEEEccCCCCchhhhhccccccCCcEEEEc
Q 037567 28 KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~ 60 (374)
.+.+++.||+|+|||+.+-..+-..+...+.+.
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs 275 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANRTDATFIRVI 275 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCceEeeCCCCCcHHHHHHHHHhccCCCeEEEE
Confidence 467899999999999865433333344444433
No 135
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.24 E-value=0.021 Score=46.15 Aligned_cols=36 Identities=17% Similarity=-0.011 Sum_probs=25.4
Q ss_pred CCCEEEEccCCCCchhhhhcccc---ccCCcEEEEcchH
Q 037567 28 KRDCLVVMATGSGKSLCYQLPPL---VTGKTALVVSPLI 63 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~~---~~~~~~lil~P~~ 63 (374)
+.-.++.|++|+|||...+-.+. ..+.+++++.|..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 44567899999999976443322 2577899988764
No 136
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.21 E-value=0.013 Score=51.94 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=14.5
Q ss_pred CCEEEEccCCCCchhhh
Q 037567 29 RDCLVVMATGSGKSLCY 45 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~ 45 (374)
..+++.||+|+|||...
T Consensus 46 ~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 46899999999999654
No 137
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.20 E-value=0.0025 Score=61.26 Aligned_cols=62 Identities=18% Similarity=0.210 Sum_probs=48.1
Q ss_pred CCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccc---cc----cCCcEEEEcchHHHHHHHHHHHHHc
Q 037567 13 VFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPP---LV----TGKTALVVSPLISLMQDQVMSLKQR 76 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~---~~----~~~~~lil~P~~~l~~q~~~~~~~~ 76 (374)
.+++-|.+++.. .+..++|.|++|||||.+..--+ +. ...++|+++.|+..+.++.+.+...
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~ 70 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQT 70 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 478999999975 46788999999999996543211 11 3468999999999999999888753
No 138
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.20 E-value=0.0043 Score=60.02 Aligned_cols=62 Identities=11% Similarity=0.157 Sum_probs=48.0
Q ss_pred CCCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcc---ccc----cCCcEEEEcchHHHHHHHHHHHHH
Q 037567 12 SVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP---PLV----TGKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 12 ~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~---~~~----~~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
..+++-|.+++.. ....++|.|++|||||.+..-- ++. ...++|+++.|+..+.++.+.+..
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~ 78 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQS 78 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 4689999999875 4678999999999999653211 111 246799999999999998888765
No 139
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.15 E-value=0.0042 Score=52.24 Aligned_cols=18 Identities=22% Similarity=0.119 Sum_probs=15.0
Q ss_pred CCEEEEccCCCCchhhhh
Q 037567 29 RDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~ 46 (374)
..+++.||+|+|||..+.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 468999999999997643
No 140
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.14 E-value=0.0014 Score=52.86 Aligned_cols=37 Identities=16% Similarity=-0.001 Sum_probs=26.7
Q ss_pred CCCEEEEccCCCCchhhhhcccc---ccCCcEEEEcchHH
Q 037567 28 KRDCLVVMATGSGKSLCYQLPPL---VTGKTALVVSPLIS 64 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~~---~~~~~~lil~P~~~ 64 (374)
++-.++.|++|+|||...+-.+. ..+.+++++-|...
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCC
Confidence 44457899999999966443322 35888999998764
No 141
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.10 E-value=0.01 Score=54.39 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=19.6
Q ss_pred CCEEEEccCCCCchhhhhccccccCCcEEE
Q 037567 29 RDCLVVMATGSGKSLCYQLPPLVTGKTALV 58 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~~~~~~~~~li 58 (374)
..+++.||+|+|||..+-..+-..+..++.
T Consensus 239 ~~vLL~GppGtGKT~lAraia~~~~~~fv~ 268 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVANETGAFFFL 268 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSEEEE
T ss_pred CcEEEECcCCCCHHHHHHHHHHHhCCCEEE
Confidence 568999999999997653332223333333
No 142
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.09 E-value=0.0076 Score=52.94 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=16.1
Q ss_pred CCCEEEEccCCCCchhhhhc
Q 037567 28 KRDCLVVMATGSGKSLCYQL 47 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l 47 (374)
.+.+++.||+|+|||..+-.
T Consensus 117 ~~~vLl~GppGtGKT~la~a 136 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKC 136 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 35789999999999976543
No 143
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.05 E-value=0.012 Score=50.22 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
.+.+++.||+|+|||..+
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 467899999999999764
No 144
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.04 E-value=0.098 Score=44.62 Aligned_cols=17 Identities=18% Similarity=0.149 Sum_probs=14.5
Q ss_pred CCEEEEccCCCCchhhh
Q 037567 29 RDCLVVMATGSGKSLCY 45 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~ 45 (374)
.++++.||+|+|||..+
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 36899999999999754
No 145
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.008 Score=53.71 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=21.0
Q ss_pred CCCEEEEccCCCCchhhhhccccccCCcEEEE
Q 037567 28 KRDCLVVMATGSGKSLCYQLPPLVTGKTALVV 59 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil 59 (374)
.+.+++.||+|+|||+.+-..+-..+..++.+
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 35689999999999976543333334444444
No 146
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.85 E-value=0.018 Score=50.07 Aligned_cols=18 Identities=22% Similarity=0.206 Sum_probs=15.3
Q ss_pred CCEEEEccCCCCchhhhh
Q 037567 29 RDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~ 46 (374)
.++++.||+|+|||..+.
T Consensus 56 ~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 479999999999997643
No 147
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.84 E-value=0.0094 Score=46.81 Aligned_cols=35 Identities=17% Similarity=0.014 Sum_probs=24.4
Q ss_pred CCCEEEEccCCCCchhhhhcccc---ccCCcEEEEcch
Q 037567 28 KRDCLVVMATGSGKSLCYQLPPL---VTGKTALVVSPL 62 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~~---~~~~~~lil~P~ 62 (374)
++=.++.||+|+|||.-.+-.+- ..+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 45568899999999944222221 247889999887
No 148
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.80 E-value=0.037 Score=48.81 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=15.1
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
+..+++.||+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 457899999999999654
No 149
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.75 E-value=0.12 Score=41.03 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=14.7
Q ss_pred CCEEEEccCCCCchhhh
Q 037567 29 RDCLVVMATGSGKSLCY 45 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~ 45 (374)
..+++.||+|+|||..+
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 67899999999999654
No 150
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.72 E-value=0.01 Score=61.01 Aligned_cols=61 Identities=21% Similarity=0.189 Sum_probs=47.8
Q ss_pred CCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhcc---ccc------cCCcEEEEcchHHHHHHHHHHHHH
Q 037567 13 VFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP---PLV------TGKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~---~~~------~~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
++++-|.+++.. .+++++|.|+.|||||.+..-- ++. ...+++++++|++.+.++.+.+..
T Consensus 10 ~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 589999999975 4789999999999999663211 111 235899999999999998888765
No 151
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.66 E-value=0.0062 Score=52.68 Aligned_cols=14 Identities=14% Similarity=0.086 Sum_probs=12.1
Q ss_pred CccEEEEeccchhh
Q 037567 126 GVCLFAVDEAHCIS 139 (374)
Q Consensus 126 ~~~~vviDE~h~~~ 139 (374)
...++++||+|.+.
T Consensus 105 ~~~vliiDEi~~l~ 118 (324)
T 3u61_B 105 RQKVIVIDEFDRSG 118 (324)
T ss_dssp CEEEEEEESCCCGG
T ss_pred CCeEEEEECCcccC
Confidence 56799999999986
No 152
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.59 E-value=0.022 Score=45.79 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=14.3
Q ss_pred CCEEEEccCCCCchhhh
Q 037567 29 RDCLVVMATGSGKSLCY 45 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~ 45 (374)
..+++.||+|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35899999999999653
No 153
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.55 E-value=0.0059 Score=52.23 Aligned_cols=16 Identities=13% Similarity=-0.224 Sum_probs=13.7
Q ss_pred CEEEEccCCCCchhhh
Q 037567 30 DCLVVMATGSGKSLCY 45 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~ 45 (374)
..++.||+|+|||..+
T Consensus 20 ~~Lf~Gp~G~GKtt~a 35 (305)
T 2gno_A 20 SILINGEDLSYPREVS 35 (305)
T ss_dssp EEEEECSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999654
No 154
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=95.44 E-value=0.079 Score=47.37 Aligned_cols=85 Identities=14% Similarity=0.138 Sum_probs=66.4
Q ss_pred HHHHHHhhcCCCcEEEEecchhHHHHHHHHHHH---cCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEec-ccc---c
Q 037567 218 VQEILKSVAGAGSIIVYCMTIKDVEEISKALKQ---LGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM-AFG---M 290 (374)
Q Consensus 218 ~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~-~~~---~ 290 (374)
+..++.....+.+++|.+|++.-+.++++.+++ .++.+..++|+.+..++......+..|+.+|+|+|+ .+. .
T Consensus 54 l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~ 133 (414)
T 3oiy_A 54 MMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNRE 133 (414)
T ss_dssp HHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHH
T ss_pred HHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHH
Confidence 333344445788999999999999999999998 577999999999998888888889899899999998 221 1
Q ss_pred cccccCccEEEE
Q 037567 291 GIDKPDVRHVIH 302 (374)
Q Consensus 291 G~d~~~~~~vi~ 302 (374)
-++..++++||.
T Consensus 134 ~~~~~~~~~iVi 145 (414)
T 3oiy_A 134 KLSQKRFDFVFV 145 (414)
T ss_dssp HHTTCCCSEEEE
T ss_pred HhccccccEEEE
Confidence 244456777663
No 155
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.39 E-value=0.015 Score=56.30 Aligned_cols=31 Identities=16% Similarity=0.166 Sum_probs=21.2
Q ss_pred CCEEEEccCCCCchhhhhccccccCCcEEEE
Q 037567 29 RDCLVVMATGSGKSLCYQLPPLVTGKTALVV 59 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil 59 (374)
+.+++.||+|+|||+.+-..+-..+...+.+
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v 542 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANECQANFISI 542 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTTTCEEEEC
T ss_pred ceEEEecCCCCCchHHHHHHHHHhCCceEEe
Confidence 5689999999999976544444444444433
No 156
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.38 E-value=0.015 Score=56.18 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=20.6
Q ss_pred CCEEEEccCCCCchhhhhccccccCCcEEEE
Q 037567 29 RDCLVVMATGSGKSLCYQLPPLVTGKTALVV 59 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil 59 (374)
+.+++.||+|+|||+.+-..+-..+..++.+
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~elg~~~~~v 269 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTTTTCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCeEEEE
Confidence 5689999999999986543333334444433
No 157
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.34 E-value=0.047 Score=44.49 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=13.6
Q ss_pred CEEEEccCCCCchhhh
Q 037567 30 DCLVVMATGSGKSLCY 45 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~ 45 (374)
.+++.||+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5799999999999653
No 158
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.34 E-value=0.047 Score=42.89 Aligned_cols=135 Identities=14% Similarity=0.062 Sum_probs=63.6
Q ss_pred CCCEEEEccCCCCchhhhhcccc---ccCCcEEEEcchHH-HHHHHHHHHHHcCCceEEcCCCCCchhhhhhhhcCCeeE
Q 037567 28 KRDCLVVMATGSGKSLCYQLPPL---VTGKTALVVSPLIS-LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQL 103 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~~---~~~~~~lil~P~~~-l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 103 (374)
...+++..++|.|||.+++-.++ ..+.+|+++-=.+. .-..-..-+..+++.....+.+..-.........
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~----- 102 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADT----- 102 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHH-----
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHH-----
Confidence 45789999999999977654433 36888988832221 0000011122333332222211110000000000
Q ss_pred EEEcCcccccCchhhHHHHHhcCccEEEEeccchhhcccCcchHHHHHHHHHHHhcCCCCeeEEEeecCccc
Q 037567 104 LFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175 (374)
Q Consensus 104 ~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~ 175 (374)
......+......+....+++||+||+-.....+.-.. ..+-.+....+...-+.+|+-..+..
T Consensus 103 -----~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~---~ev~~~l~~Rp~~~~vIlTGr~ap~~ 166 (196)
T 1g5t_A 103 -----AACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPL---EEVISALNARPGHQTVIITGRGCHRD 166 (196)
T ss_dssp -----HHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCH---HHHHHHHHTSCTTCEEEEECSSCCHH
T ss_pred -----HHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCH---HHHHHHHHhCcCCCEEEEECCCCcHH
Confidence 00001111111122225689999999976555443322 22334444455666777777766543
No 159
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.33 E-value=0.014 Score=48.07 Aligned_cols=51 Identities=22% Similarity=0.201 Sum_probs=31.5
Q ss_pred cCCCEEEEccCCCCchhhhhc---cccccCCcEEEEcchHHHHHHHHHHHHHcCC
Q 037567 27 EKRDCLVVMATGSGKSLCYQL---PPLVTGKTALVVSPLISLMQDQVMSLKQRGI 78 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~~l---~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 78 (374)
.|.-+++.||+|+|||..++. .+...+.+++++.-.. ...+..+.+...+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~-~~~~~~~~~~~~g~ 75 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE-HPVQVRQNMAQFGW 75 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS-CHHHHHHHHHTTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC-CHHHHHHHHHHcCC
Confidence 356678999999999965332 2223566777776442 34555555555443
No 160
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.32 E-value=0.02 Score=46.60 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=22.1
Q ss_pred CCCEEEEccCCCCchhhhhccc---cccCCcEEEEcc
Q 037567 28 KRDCLVVMATGSGKSLCYQLPP---LVTGKTALVVSP 61 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~---~~~~~~~lil~P 61 (374)
|.-+++.||+|+|||......+ ...+.+++++..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 5667899999999995433221 224566777653
No 161
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.30 E-value=0.039 Score=48.75 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=15.1
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
+..+++.||+|+|||...
T Consensus 44 ~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCEEECBCTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 457899999999999654
No 162
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.19 E-value=0.029 Score=49.01 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=14.5
Q ss_pred CCEEEEccCCCCchhhh
Q 037567 29 RDCLVVMATGSGKSLCY 45 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~ 45 (374)
.++++.||+|+|||...
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46899999999999654
No 163
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.16 E-value=0.032 Score=51.57 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=21.0
Q ss_pred CCEEEEccCCCCchhhhhccccccCCcEEEEc
Q 037567 29 RDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~ 60 (374)
+.+++.||+|+|||..+...+-..+..++.+.
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l~~~~i~in 109 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQN 109 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 57899999999999765433333344454443
No 164
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.16 E-value=0.024 Score=47.07 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=15.0
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
.+.+++.||+|+|||..+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 346899999999999754
No 165
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.15 E-value=0.049 Score=48.17 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=14.0
Q ss_pred CEEEEccCCCCchhhh
Q 037567 30 DCLVVMATGSGKSLCY 45 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~ 45 (374)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6899999999999654
No 166
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.94 E-value=0.11 Score=45.71 Aligned_cols=15 Identities=27% Similarity=0.246 Sum_probs=13.1
Q ss_pred EEEEccCCCCchhhh
Q 037567 31 CLVVMATGSGKSLCY 45 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~ 45 (374)
+++.||+|+|||...
T Consensus 41 ~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 41 YLFSGTRGVGKTSIA 55 (373)
T ss_dssp EEEESCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 689999999999654
No 167
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.71 E-value=0.038 Score=47.55 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=14.0
Q ss_pred CEEEEccCCCCchhhh
Q 037567 30 DCLVVMATGSGKSLCY 45 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~ 45 (374)
++++.||+|+|||..+
T Consensus 48 ~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAA 63 (327)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 6899999999999654
No 168
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.57 E-value=0.049 Score=43.80 Aligned_cols=34 Identities=24% Similarity=0.113 Sum_probs=23.1
Q ss_pred CCCEEEEccCCCCchhhhhccccccCCcEEEEcc
Q 037567 28 KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P 61 (374)
|.-+++.||+|+|||..+...+...+.+++++.-
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~ 53 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDT 53 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEES
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEEC
Confidence 4567899999999996543322245667777653
No 169
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.51 E-value=0.092 Score=47.66 Aligned_cols=35 Identities=14% Similarity=0.022 Sum_probs=22.9
Q ss_pred CCCEEEEccCCCCchhhhhccc---cc-cCCcEEEEcch
Q 037567 28 KRDCLVVMATGSGKSLCYQLPP---LV-TGKTALVVSPL 62 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~---~~-~~~~~lil~P~ 62 (374)
|.-+++.|++|+|||...+..+ .. .+.+++++..-
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 4456889999999995543222 12 35578887643
No 170
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.39 E-value=0.034 Score=58.88 Aligned_cols=96 Identities=16% Similarity=0.116 Sum_probs=54.6
Q ss_pred HHHHHHc------CCCEEEEccCCCCchhhhhc---cccccCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchh
Q 037567 21 VIQRIIE------KRDCLVVMATGSGKSLCYQL---PPLVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSS 91 (374)
Q Consensus 21 ~~~~~~~------~~~~l~~a~tGsGKT~~~~l---~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ 91 (374)
.+..++. ++.+++.+|+|+|||..+.. .+...+.+++++.....+.... .+.+|....
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~---a~~~G~dl~---------- 1480 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDID---------- 1480 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH---HHHTTCCTT----------
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH---HHHcCCCch----------
Confidence 3566655 67889999999999965432 2334577888887664332222 344443211
Q ss_pred hhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhh
Q 037567 92 VQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCIS 139 (374)
Q Consensus 92 ~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~ 139 (374)
.+.|..|+.................+++|||||..-+.
T Consensus 1481 ----------~l~v~~~~~~E~~l~~~~~lvr~~~~~lVVIDsi~al~ 1518 (2050)
T 3cmu_A 1481 ----------NLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1518 (2050)
T ss_dssp ----------TCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ----------hceeecCChHHHHHHHHHHHHhcCCCCEEEEcChhHhc
Confidence 12333444322222222222334678999999997554
No 171
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=94.32 E-value=0.048 Score=49.65 Aligned_cols=50 Identities=10% Similarity=-0.031 Sum_probs=41.4
Q ss_pred CCCEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHHcC
Q 037567 28 KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRG 77 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 77 (374)
+....+.+-+|||||+++...+...+.++||++|+...+.+++.+++.+.
T Consensus 14 ~~~~~l~g~~gs~ka~~~a~l~~~~~~p~lvv~~~~~~A~~l~~~l~~~~ 63 (483)
T 3hjh_A 14 GEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT 63 (483)
T ss_dssp TCEEEEECCCTTHHHHHHHHHHHHSSSCEEEEESSHHHHHHHHHHHHHTC
T ss_pred CCeEEEeCCCchHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHhhC
Confidence 45678899999999987554444456789999999999999999999873
No 172
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.28 E-value=0.14 Score=46.39 Aligned_cols=35 Identities=11% Similarity=-0.018 Sum_probs=22.6
Q ss_pred CCCEEEEccCCCCchhhhhcc---ccc-cCCcEEEEcch
Q 037567 28 KRDCLVVMATGSGKSLCYQLP---PLV-TGKTALVVSPL 62 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~---~~~-~~~~~lil~P~ 62 (374)
|.-+++.|++|+|||...+-. +.. .+.+++++..-
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 345688999999999543322 222 35678887653
No 173
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.24 E-value=0.11 Score=45.22 Aligned_cols=104 Identities=8% Similarity=0.034 Sum_probs=53.1
Q ss_pred HHHHHHc-----CCCEEEEccCCCCchhhhhcccc---c------cCCcEEEEcchHHH-HHHHHHHHHHcCCceEEcCC
Q 037567 21 VIQRIIE-----KRDCLVVMATGSGKSLCYQLPPL---V------TGKTALVVSPLISL-MQDQVMSLKQRGINAEFLGS 85 (374)
Q Consensus 21 ~~~~~~~-----~~~~l~~a~tGsGKT~~~~l~~~---~------~~~~~lil~P~~~l-~~q~~~~~~~~~~~~~~~~~ 85 (374)
.+..++. |.-+++.||+|+|||..++..+. . .+.+++++.-...+ ..+....+..++...
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~----- 184 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDH----- 184 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCH-----
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCH-----
Confidence 4555553 34568999999999955432221 1 25677777654321 334444444544321
Q ss_pred CCCchhhhhhhhcCCeeEEEEcCccc---ccCchhhHHHHHh--cCccEEEEeccchhhc
Q 037567 86 AQTDSSVQTKAETGYFQLLFMTPEKA---CIIPISFWSKLLK--AGVCLFAVDEAHCISE 140 (374)
Q Consensus 86 ~~~~~~~~~~~~~~~~~i~i~T~~~l---~~~~~~~~~~~~~--~~~~~vviDE~h~~~~ 140 (374)
... .. ++.+..+... ..++......... ..+++||||....+..
T Consensus 185 ----~~~----l~---~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 185 ----DAV----LD---NVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp ----HHH----HH---TEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred ----HHH----Hh---ceeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 000 01 2344333222 1222111122223 5789999999998864
No 174
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=94.22 E-value=0.24 Score=50.49 Aligned_cols=88 Identities=10% Similarity=0.107 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHc----CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEec-cc
Q 037567 214 VDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQL----GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM-AF 288 (374)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~-~~ 288 (374)
....+.........+.+++|.+|+..-+.+.++.+++. +..+..+++..+..++...++.+..|+.+|+|+|+ .+
T Consensus 638 T~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll 717 (1151)
T 2eyq_A 638 TEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL 717 (1151)
T ss_dssp HHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH
T ss_pred HHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH
Confidence 33333334444456789999999999999988888753 56788899999999999999999999999999997 55
Q ss_pred cccccccCccEEE
Q 037567 289 GMGIDKPDVRHVI 301 (374)
Q Consensus 289 ~~G~d~~~~~~vi 301 (374)
...+++.++..||
T Consensus 718 ~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 718 QSDVKFKDLGLLI 730 (1151)
T ss_dssp HSCCCCSSEEEEE
T ss_pred hCCccccccceEE
Confidence 5567777777766
No 175
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.21 E-value=0.059 Score=46.27 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=13.8
Q ss_pred CEEEEccCCCCchhhh
Q 037567 30 DCLVVMATGSGKSLCY 45 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~ 45 (374)
++++.||+|+|||...
T Consensus 44 ~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSV 59 (323)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 4899999999999654
No 176
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.19 E-value=0.097 Score=45.21 Aligned_cols=43 Identities=12% Similarity=-0.013 Sum_probs=27.1
Q ss_pred HHHHHHHc----CCCEEEEccCCCCchhhhhcc---ccccCCcEEEEcch
Q 037567 20 DVIQRIIE----KRDCLVVMATGSGKSLCYQLP---PLVTGKTALVVSPL 62 (374)
Q Consensus 20 ~~~~~~~~----~~~~l~~a~tGsGKT~~~~l~---~~~~~~~~lil~P~ 62 (374)
..+..++. |.-+++.|++|+|||..++-. +...+.+++++..-
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 34455543 345688999999999543322 22257788887653
No 177
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.04 E-value=0.071 Score=48.46 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=15.1
Q ss_pred CCEEEEccCCCCchhhhh
Q 037567 29 RDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~ 46 (374)
+.+++.||+|+|||..+-
T Consensus 50 ~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 568999999999997643
No 178
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.02 E-value=0.03 Score=46.13 Aligned_cols=35 Identities=23% Similarity=0.225 Sum_probs=22.5
Q ss_pred cCCCEEEEccCCCCchhhhhcc---cc-ccCCcEEEEcc
Q 037567 27 EKRDCLVVMATGSGKSLCYQLP---PL-VTGKTALVVSP 61 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~~l~---~~-~~~~~~lil~P 61 (374)
.|.-+.+.||+|+|||...... .+ .....++++.-
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 4677889999999999654322 22 34555555543
No 179
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.94 E-value=0.051 Score=46.31 Aligned_cols=19 Identities=21% Similarity=0.134 Sum_probs=15.0
Q ss_pred CCCEEEEccCCCCchhhhh
Q 037567 28 KRDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~ 46 (374)
+..+++.||+|+|||..+.
T Consensus 123 gsviLI~GpPGsGKTtLAl 141 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVH 141 (331)
T ss_dssp SEEEEEECSCSSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4556899999999996544
No 180
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.92 E-value=0.12 Score=44.41 Aligned_cols=45 Identities=11% Similarity=-0.015 Sum_probs=26.9
Q ss_pred CCCEEEEccCCCCchhhhhcc---ccccCCcEEEEcchHHHHHHHHHHH
Q 037567 28 KRDCLVVMATGSGKSLCYQLP---PLVTGKTALVVSPLISLMQDQVMSL 73 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~---~~~~~~~~lil~P~~~l~~q~~~~~ 73 (374)
|.-+++.|++|+|||..++-. +..++.+++++..- .-..|+...+
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE-~s~~~l~~R~ 115 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE-MGKKENIKRL 115 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS-SCHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC-CCHHHHHHHH
Confidence 445789999999999543322 22345678887643 2333344443
No 181
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.90 E-value=0.47 Score=42.50 Aligned_cols=51 Identities=22% Similarity=0.102 Sum_probs=28.6
Q ss_pred CEEEEccCCCCchhhhhccc---cccCCcEEEEc--chHH-HHHHHHHHHHHcCCce
Q 037567 30 DCLVVMATGSGKSLCYQLPP---LVTGKTALVVS--PLIS-LMQDQVMSLKQRGINA 80 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~l~~---~~~~~~~lil~--P~~~-l~~q~~~~~~~~~~~~ 80 (374)
-+++.+++|+|||.+....+ ...+.+++++. |.+. ..+|........+...
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv 158 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEV 158 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEE
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcE
Confidence 45789999999996643221 23466776655 3333 3344444444444443
No 182
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=93.84 E-value=0.25 Score=50.02 Aligned_cols=86 Identities=14% Similarity=0.121 Sum_probs=68.1
Q ss_pred HHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHH---cCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEec-cccc--
Q 037567 217 LVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQ---LGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM-AFGM-- 290 (374)
Q Consensus 217 ~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~-~~~~-- 290 (374)
.+..++.....+.++||.+|++.-+.++++.+++ .++.+..+||+.+..++....+.+..|+.+|+|+|+ .+..
T Consensus 110 ~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l 189 (1104)
T 4ddu_A 110 GMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNR 189 (1104)
T ss_dssp HHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSH
T ss_pred HHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHH
Confidence 3344444445788999999999999999999998 467899999999998888888999999999999998 2211
Q ss_pred -cccccCccEEEE
Q 037567 291 -GIDKPDVRHVIH 302 (374)
Q Consensus 291 -G~d~~~~~~vi~ 302 (374)
-++..+++++|.
T Consensus 190 ~~l~~~~l~~lVi 202 (1104)
T 4ddu_A 190 EKLSQKRFDFVFV 202 (1104)
T ss_dssp HHHHTSCCSEEEE
T ss_pred HhhcccCcCEEEE
Confidence 245567777774
No 183
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.74 E-value=0.031 Score=46.01 Aligned_cols=49 Identities=18% Similarity=0.158 Sum_probs=30.1
Q ss_pred CCCEEEEccCCCCchhhhhc-c---ccccCCcEEEEcchHHHHHHHHHHHHHcC
Q 037567 28 KRDCLVVMATGSGKSLCYQL-P---PLVTGKTALVVSPLISLMQDQVMSLKQRG 77 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l-~---~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 77 (374)
|.-+++.|++|+|||..++- + +...+.+++++.-. .-..+..+.+...+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E-~~~~~~~~~~~~~~ 82 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE-ERARDLRREMASFG 82 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS-SCHHHHHHHHHTTT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc-CCHHHHHHHHHHcC
Confidence 45678999999999954332 1 12336677777643 33455555665543
No 184
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=93.73 E-value=0.14 Score=43.73 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
..++++.|++|+|||..+
T Consensus 25 ~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TSCEEEESCTTSCHHHHH
T ss_pred CCcEEEECCCCchHHHHH
Confidence 568999999999999764
No 185
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.57 E-value=0.044 Score=47.82 Aligned_cols=43 Identities=16% Similarity=0.033 Sum_probs=28.0
Q ss_pred HHHHHHHc------CCCEEEEccCCCCchhhhhccc---cccCCcEEEEcch
Q 037567 20 DVIQRIIE------KRDCLVVMATGSGKSLCYQLPP---LVTGKTALVVSPL 62 (374)
Q Consensus 20 ~~~~~~~~------~~~~l~~a~tGsGKT~~~~l~~---~~~~~~~lil~P~ 62 (374)
..++.++. +.-+++.+++|+|||..++-.+ ...+.+++++...
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 34666664 3457899999999996543222 2346678877653
No 186
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.52 E-value=0.034 Score=48.01 Aligned_cols=97 Identities=13% Similarity=0.113 Sum_probs=49.8
Q ss_pred CCCEEEEccCCCCchhhhhccc---ccc------CCcEEEEcchHHH-HHHHHHHHHHcCCceEEcCCCCCchhhhhhhh
Q 037567 28 KRDCLVVMATGSGKSLCYQLPP---LVT------GKTALVVSPLISL-MQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE 97 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~---~~~------~~~~lil~P~~~l-~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (374)
+.-+++.||+|+|||..++..+ ... +.+++++.-...+ ..+..+.+..++.... ...
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~---------~~~---- 173 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDID---------NVM---- 173 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHH---------HHH----
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHH---------HHh----
Confidence 3557899999999995543222 112 5577777654322 3444444455543210 000
Q ss_pred cCCeeEEEEcCcccc---cCchhhHHHHHh-cCccEEEEeccchhhc
Q 037567 98 TGYFQLLFMTPEKAC---IIPISFWSKLLK-AGVCLFAVDEAHCISE 140 (374)
Q Consensus 98 ~~~~~i~i~T~~~l~---~~~~~~~~~~~~-~~~~~vviDE~h~~~~ 140 (374)
. ++.+..+.... .++......... .++++||||++..+..
T Consensus 174 ~---~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 174 N---NIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp H---TEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred c---cEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 0 24444332211 111222122222 5789999999998753
No 187
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.43 E-value=0.15 Score=45.41 Aligned_cols=17 Identities=18% Similarity=0.219 Sum_probs=13.4
Q ss_pred CCEEE--EccCCCCchhhh
Q 037567 29 RDCLV--VMATGSGKSLCY 45 (374)
Q Consensus 29 ~~~l~--~a~tGsGKT~~~ 45 (374)
..+++ .||+|+|||...
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 35677 899999999653
No 188
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.36 E-value=0.19 Score=41.40 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=14.2
Q ss_pred CCEEEEccCCCCchhhh
Q 037567 29 RDCLVVMATGSGKSLCY 45 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~ 45 (374)
+.+++.||+|+|||...
T Consensus 50 ~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35899999999999654
No 189
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.30 E-value=0.035 Score=48.31 Aligned_cols=97 Identities=18% Similarity=0.054 Sum_probs=51.1
Q ss_pred HHHHHHHc------CCCEEEEccCCCCchhhhhcccc---ccCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCch
Q 037567 20 DVIQRIIE------KRDCLVVMATGSGKSLCYQLPPL---VTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDS 90 (374)
Q Consensus 20 ~~~~~~~~------~~~~l~~a~tGsGKT~~~~l~~~---~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~ 90 (374)
..++.++. +.-+++.+|+|+|||...+..+. ..+.+++++.....+-.. ..++++...
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~---ra~rlgv~~---------- 113 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV---YAKNLGVDL---------- 113 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH---HHHHHTCCG----------
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH---HHHHcCCch----------
Confidence 45666665 34568899999999965432222 246678777654333222 223333221
Q ss_pred hhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhh
Q 037567 91 SVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCIS 139 (374)
Q Consensus 91 ~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~ 139 (374)
-++.+..+..+...+............+++|||.+..+.
T Consensus 114 ----------~~l~i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~~l~ 152 (356)
T 3hr8_A 114 ----------KSLLISQPDHGEQALEIVDELVRSGVVDLIVVDSVAALV 152 (356)
T ss_dssp ----------GGCEEECCSSHHHHHHHHHHHHHTSCCSEEEEECTTTCC
T ss_pred ----------hhhhhhhccCHHHHHHHHHHHhhhcCCCeEEehHhhhhc
Confidence 023344443332222211111223568899999988765
No 190
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.10 E-value=0.36 Score=40.43 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=14.2
Q ss_pred CCEEEEccCCCCchhhh
Q 037567 29 RDCLVVMATGSGKSLCY 45 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~ 45 (374)
+.+++.||+|+|||..+
T Consensus 74 ~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcChHHHHH
Confidence 35899999999999654
No 191
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.10 E-value=0.28 Score=41.73 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=26.8
Q ss_pred CEEEEccCCCCchhhhhc-ccc--ccCCcEEEEc-ch-H-HHHHHHHHHHHHcCCc
Q 037567 30 DCLVVMATGSGKSLCYQL-PPL--VTGKTALVVS-PL-I-SLMQDQVMSLKQRGIN 79 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~l-~~~--~~~~~~lil~-P~-~-~l~~q~~~~~~~~~~~ 79 (374)
-+++.+++|+|||.+... +.. ..+.+++++. ++ + ...+|...+....++.
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~ 161 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGAT 161 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCE
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCc
Confidence 467899999999965432 211 2355666544 22 2 3334444444444443
No 192
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.05 E-value=0.84 Score=40.81 Aligned_cols=31 Identities=23% Similarity=0.145 Sum_probs=20.1
Q ss_pred CEEEEccCCCCchhhhhccc---cccCCcEEEEc
Q 037567 30 DCLVVMATGSGKSLCYQLPP---LVTGKTALVVS 60 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~l~~---~~~~~~~lil~ 60 (374)
-+++.|++|+|||.+....+ ...+.+++++.
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 35778999999996543221 22466776654
No 193
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.01 E-value=0.052 Score=47.31 Aligned_cols=43 Identities=14% Similarity=0.044 Sum_probs=27.7
Q ss_pred HHHHHHHc------CCCEEEEccCCCCchhhhhccc---cccCCcEEEEcch
Q 037567 20 DVIQRIIE------KRDCLVVMATGSGKSLCYQLPP---LVTGKTALVVSPL 62 (374)
Q Consensus 20 ~~~~~~~~------~~~~l~~a~tGsGKT~~~~l~~---~~~~~~~lil~P~ 62 (374)
..++.++. +.-+++.+|+|+|||...+..+ ...+.+++++.-.
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 45566665 3457899999999996543222 2346677777643
No 194
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=92.93 E-value=0.05 Score=47.68 Aligned_cols=97 Identities=13% Similarity=0.083 Sum_probs=50.6
Q ss_pred HHHHHHHc------CCCEEEEccCCCCchhhhhccc---cccCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCch
Q 037567 20 DVIQRIIE------KRDCLVVMATGSGKSLCYQLPP---LVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDS 90 (374)
Q Consensus 20 ~~~~~~~~------~~~~l~~a~tGsGKT~~~~l~~---~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~ 90 (374)
..++.++. +.-+++.+++|+|||..++-.+ ...+.+++++..-..+ .++. ....+...
T Consensus 60 ~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~-~~~~--a~~~g~d~---------- 126 (366)
T 1xp8_A 60 LSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHAL-DPVY--ARALGVNT---------- 126 (366)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC-CHHH--HHHTTCCG----------
T ss_pred HHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCCh-hHHH--HHHcCCCH----------
Confidence 45566664 3456889999999996543222 2245677777654322 2221 22333221
Q ss_pred hhhhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccEEEEeccchhh
Q 037567 91 SVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCIS 139 (374)
Q Consensus 91 ~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~ 139 (374)
-++.+..|..................+++||||.+..+.
T Consensus 127 ----------~~l~i~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 127 ----------DELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVAALT 165 (366)
T ss_dssp ----------GGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECTTTCC
T ss_pred ----------HHceeecCCcHHHHHHHHHHHHhcCCCCEEEEeChHHhc
Confidence 023333443322221111111122468999999999886
No 195
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.73 E-value=0.11 Score=42.36 Aligned_cols=18 Identities=11% Similarity=-0.068 Sum_probs=14.8
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
|.-+.+.||+|+|||..+
T Consensus 24 G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp TSEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 456789999999999654
No 196
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.66 E-value=0.072 Score=39.76 Aligned_cols=19 Identities=16% Similarity=0.129 Sum_probs=16.3
Q ss_pred cCCCEEEEccCCCCchhhh
Q 037567 27 EKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~ 45 (374)
.+.++++.||+|+|||..+
T Consensus 23 ~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp CCSCEEEESSTTSSHHHHH
T ss_pred CCCCEEEECCCCCCHHHHH
Confidence 4678999999999999764
No 197
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.93 E-value=0.22 Score=44.89 Aligned_cols=35 Identities=11% Similarity=-0.051 Sum_probs=23.4
Q ss_pred CCCEEEEccCCCCchhhhhcc---ccccCCcEEEEcch
Q 037567 28 KRDCLVVMATGSGKSLCYQLP---PLVTGKTALVVSPL 62 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~---~~~~~~~~lil~P~ 62 (374)
|.-+++.|+||+|||..++-. +..++.++++++.-
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 345688999999999553322 22346778888654
No 198
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.91 E-value=0.15 Score=49.91 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=15.7
Q ss_pred CCCEEEEccCCCCchhhhh
Q 037567 28 KRDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~ 46 (374)
++.+++.||+|+|||..+-
T Consensus 238 ~~~vLL~Gp~GtGKTtLar 256 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp CCEEEECSCTTSSHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4578999999999997643
No 199
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=91.89 E-value=0.18 Score=49.02 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
+.++++.||+|+|||...
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 467899999999999654
No 200
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=91.59 E-value=0.07 Score=45.38 Aligned_cols=86 Identities=8% Similarity=0.013 Sum_probs=49.7
Q ss_pred CEEEEccCCCCchhhhhccc---ccc--CCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhhhhhhhcCCeeEE
Q 037567 30 DCLVVMATGSGKSLCYQLPP---LVT--GKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLL 104 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~l~~---~~~--~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 104 (374)
-+++.+|+|+|||...+-.+ ... +.+++++..-.++... .++++|... -+++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~---ra~~lGvd~--------------------d~ll 86 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA---YLRSMGVDP--------------------ERVI 86 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH---HHHHTTCCG--------------------GGEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH---HHHHhCCCH--------------------HHeE
Confidence 46889999999996543222 222 5678887765544332 345555431 1355
Q ss_pred EEcCcccccC-chhhHHH---HHhcCccEEEEeccchhh
Q 037567 105 FMTPEKACII-PISFWSK---LLKAGVCLFAVDEAHCIS 139 (374)
Q Consensus 105 i~T~~~l~~~-~~~~~~~---~~~~~~~~vviDE~h~~~ 139 (374)
+..|...... +.. ... +....+++||||=+..+.
T Consensus 87 v~~~~~~E~~~l~i-~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 87 HTPVQSLEQLRIDM-VNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp EEECSBHHHHHHHH-HHHHHTCCTTCCEEEEEECSTTCB
T ss_pred EEcCCCHHHHHHHH-HHHHHHhhccCceEEEEecccccc
Confidence 6666544332 111 111 123468899999999885
No 201
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.49 E-value=0.13 Score=53.95 Aligned_cols=89 Identities=17% Similarity=0.103 Sum_probs=60.0
Q ss_pred CCEEEEccCCCCchhhhhccc---cccCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhhhhhhhcCCeeEEE
Q 037567 29 RDCLVVMATGSGKSLCYQLPP---LVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLF 105 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~~---~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 105 (374)
+-+.+.+|.|||||..++-.+ ...+..++++.+-.++-..+ ++++|.+.. ++++
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~---~~~~Gv~~~--------------------~l~~ 1488 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDID--------------------NLLC 1488 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH---HHHTTCCGG--------------------GCEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHH---HHHcCCCHH--------------------HeEE
Confidence 457899999999997654333 33588899988887776654 566655422 3667
Q ss_pred EcCcccccCchhhHHHHHhcCccEEEEeccchhhc
Q 037567 106 MTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISE 140 (374)
Q Consensus 106 ~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~~ 140 (374)
.-|+.-...+......+....+++||||.+-.+..
T Consensus 1489 ~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1489 SQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp ECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred eCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCc
Confidence 77765433333333344557799999999988764
No 202
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.46 E-value=0.22 Score=49.11 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=15.1
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
.+++++.||+|+|||...
T Consensus 191 ~~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CCCCEEEECTTSCHHHHH
T ss_pred CCceEEEcCCCCCHHHHH
Confidence 357899999999999654
No 203
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=91.43 E-value=0.61 Score=43.06 Aligned_cols=60 Identities=17% Similarity=0.130 Sum_probs=55.0
Q ss_pred CCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEec
Q 037567 227 GAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM 286 (374)
Q Consensus 227 ~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~ 286 (374)
..+.+||.+|++.-+....+.+++.++.+..++++.+..++......+..|..+++++|+
T Consensus 64 ~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 64 LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 457899999999999999999999999999999999998888888888899999999997
No 204
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=91.30 E-value=0.64 Score=43.65 Aligned_cols=60 Identities=23% Similarity=0.310 Sum_probs=54.0
Q ss_pred CCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhh--hcCCeeEEEEec
Q 037567 227 GAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLF--IRDEIRVMVATM 286 (374)
Q Consensus 227 ~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f--~~g~~~ilv~t~ 286 (374)
..+.+||.+|++.-+....+.|.+.|+.+..++|+.+..++......+ ..+..+|+++|+
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 467999999999999999999999999999999999999888888877 467889999998
No 205
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=91.24 E-value=1 Score=34.59 Aligned_cols=73 Identities=14% Similarity=0.064 Sum_probs=52.5
Q ss_pred cCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhhh---hhhhcCCeeEEEEcCcccccCchhhHHHHHhcCcc
Q 037567 52 TGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQ---TKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVC 128 (374)
Q Consensus 52 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~ 128 (374)
...++||+++++..+..+...+...|..+..+++........ .....+...|+|+|.- +. ..+....++
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~-~~-------~Gid~~~~~ 104 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV-CA-------RGIDVKQVT 104 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS-CC-------TTTCCTTEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecc-hh-------cCCCcccCC
Confidence 367899999999999999999999999988888876554332 2334567899999932 22 223345667
Q ss_pred EEEE
Q 037567 129 LFAV 132 (374)
Q Consensus 129 ~vvi 132 (374)
+||.
T Consensus 105 ~Vi~ 108 (175)
T 2rb4_A 105 IVVN 108 (175)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7774
No 206
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.12 E-value=0.19 Score=40.10 Aligned_cols=35 Identities=20% Similarity=0.072 Sum_probs=28.0
Q ss_pred CCCCchhHHHHHHHHHcCCCEEEEccCCCCchhhh
Q 037567 11 YSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 11 ~~~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~ 45 (374)
+...+..|..++..+..|.-+.+.||.|+|||...
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 44445567788888888888999999999999643
No 207
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=90.84 E-value=1.3 Score=30.08 Aligned_cols=52 Identities=21% Similarity=0.315 Sum_probs=44.4
Q ss_pred EEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEE
Q 037567 231 IIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVM 282 (374)
Q Consensus 231 ~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~il 282 (374)
.+||.........+...+++.|..++.++++...+.|..-++.|.....++-
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvr 56 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVR 56 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCcee
Confidence 4678888888899999999999999999999999999999999987655544
No 208
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=90.71 E-value=0.078 Score=45.65 Aligned_cols=17 Identities=24% Similarity=0.108 Sum_probs=13.7
Q ss_pred CCEEEEccCCCCchhhh
Q 037567 29 RDCLVVMATGSGKSLCY 45 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~ 45 (374)
.-+++.|++|+|||...
T Consensus 99 ~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45689999999999543
No 209
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.27 E-value=1.1 Score=43.41 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=13.9
Q ss_pred CEEEEccCCCCchhhh
Q 037567 30 DCLVVMATGSGKSLCY 45 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~ 45 (374)
++++.||||+|||..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4899999999999754
No 210
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=89.77 E-value=1.2 Score=43.92 Aligned_cols=16 Identities=31% Similarity=0.320 Sum_probs=14.0
Q ss_pred CEEEEccCCCCchhhh
Q 037567 30 DCLVVMATGSGKSLCY 45 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~ 45 (374)
.+++.||||+|||..+
T Consensus 590 ~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEBSCSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5799999999999754
No 211
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=89.73 E-value=0.12 Score=40.83 Aligned_cols=27 Identities=11% Similarity=0.127 Sum_probs=18.5
Q ss_pred HHHHHHHHcC----CCEEEEccCCCCchhhh
Q 037567 19 KDVIQRIIEK----RDCLVVMATGSGKSLCY 45 (374)
Q Consensus 19 ~~~~~~~~~~----~~~l~~a~tGsGKT~~~ 45 (374)
...+..+.++ +.+++.||+|+|||..+
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 3444444443 34788999999999654
No 212
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=89.10 E-value=4.2 Score=32.24 Aligned_cols=73 Identities=23% Similarity=0.367 Sum_probs=52.7
Q ss_pred CCcEEEEecchhHHHHHHHHHHHc-----CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEecc-c-----cccccccC
Q 037567 228 AGSIIVYCMTIKDVEEISKALKQL-----GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMA-F-----GMGIDKPD 296 (374)
Q Consensus 228 ~~~~lVf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~-~-----~~G~d~~~ 296 (374)
+.+++|.+|++.-+.++++.+++. +..+..++|+.+..+.... +..+..+|+|+|+- + ...+++.+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---HhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 348999999999999999888774 6778889998876554433 34566789999972 2 12356667
Q ss_pred ccEEEEE
Q 037567 297 VRHVIHY 303 (374)
Q Consensus 297 ~~~vi~~ 303 (374)
++++|.-
T Consensus 159 ~~~lViD 165 (220)
T 1t6n_A 159 IKHFILD 165 (220)
T ss_dssp CCEEEEE
T ss_pred CCEEEEc
Confidence 7777743
No 213
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.04 E-value=0.39 Score=51.18 Aligned_cols=43 Identities=16% Similarity=0.068 Sum_probs=29.5
Q ss_pred cCCCEEEEccCCCCchhhhh---ccccccCCcEEEEcchHHHHHHHH
Q 037567 27 EKRDCLVVMATGSGKSLCYQ---LPPLVTGKTALVVSPLISLMQDQV 70 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~~---l~~~~~~~~~lil~P~~~l~~q~~ 70 (374)
.+..+++.+|+|+|||..+. ..+...+.+++++.-. ++.++..
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~e-e~~~~L~ 1125 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE-HALDPIY 1125 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT-SCCCHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcc-ccHHHHH
Confidence 46788999999999996543 2344567788887654 4444444
No 214
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=88.96 E-value=0.28 Score=44.90 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=20.3
Q ss_pred HHHHHHHcCCCEEEEccCCCCchhhh
Q 037567 20 DVIQRIIEKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 20 ~~~~~~~~~~~~l~~a~tGsGKT~~~ 45 (374)
.+...+..+.++++.||||+|||..+
T Consensus 33 ~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 33 LCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHhcCCeeEeecCchHHHHHHH
Confidence 34444556889999999999999654
No 215
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=88.53 E-value=0.53 Score=43.24 Aligned_cols=20 Identities=40% Similarity=0.393 Sum_probs=16.9
Q ss_pred HHcCCCEEEEccCCCCchhh
Q 037567 25 IIEKRDCLVVMATGSGKSLC 44 (374)
Q Consensus 25 ~~~~~~~l~~a~tGsGKT~~ 44 (374)
+..+..+++.||||||||..
T Consensus 257 v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHH
T ss_pred HhCCCEEEEECCCCCCHHHH
Confidence 44678899999999999965
No 216
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.33 E-value=0.28 Score=38.05 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=14.6
Q ss_pred CCEEEEccCCCCchhhh
Q 037567 29 RDCLVVMATGSGKSLCY 45 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~ 45 (374)
..+++.||+|+|||...
T Consensus 44 ~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CceEEECCCCCCHHHHH
Confidence 56899999999999654
No 217
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=88.23 E-value=0.14 Score=43.39 Aligned_cols=33 Identities=21% Similarity=0.133 Sum_probs=20.9
Q ss_pred CCEEEEccCCCCchhhhhccccccCCcEEEEcc
Q 037567 29 RDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P 61 (374)
..++++||+|+|||..+-..+-.-+..++.+..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~ 69 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKMGINPIMMSA 69 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeH
Confidence 357889999999997654333333444554443
No 218
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=88.05 E-value=0.2 Score=43.19 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=18.1
Q ss_pred HHHcCCCEEEEccCCCCchhhh
Q 037567 24 RIIEKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 24 ~~~~~~~~l~~a~tGsGKT~~~ 45 (374)
.+..+.++++.||+|+|||..+
T Consensus 42 ~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 42 GICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHcCCeEEEECCCCCcHHHHH
Confidence 3445889999999999999654
No 219
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=87.74 E-value=2.3 Score=34.46 Aligned_cols=72 Identities=10% Similarity=0.074 Sum_probs=51.2
Q ss_pred CCCcEEEEecchhHHHHHHHHHHH----cCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEec-cc----c-ccccccC
Q 037567 227 GAGSIIVYCMTIKDVEEISKALKQ----LGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM-AF----G-MGIDKPD 296 (374)
Q Consensus 227 ~~~~~lVf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~-~~----~-~G~d~~~ 296 (374)
.+.+++|.+|++.-+.++++.+++ .+..+..++|+.+.......+. . ..+|+|+|+ .+ . ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R-GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H-CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C-CCCEEEECHHHHHHHHHcCCCCccc
Confidence 456799999999999888877765 3788889999987765554433 2 368999997 22 1 2346667
Q ss_pred ccEEEE
Q 037567 297 VRHVIH 302 (374)
Q Consensus 297 ~~~vi~ 302 (374)
++++|.
T Consensus 177 ~~~lVi 182 (242)
T 3fe2_A 177 TTYLVL 182 (242)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 777663
No 220
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=87.58 E-value=3.8 Score=33.43 Aligned_cols=72 Identities=18% Similarity=0.210 Sum_probs=51.3
Q ss_pred CCCcEEEEecchhHHHHHHHHHHHc----CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEec-cc----c--cccccc
Q 037567 227 GAGSIIVYCMTIKDVEEISKALKQL----GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM-AF----G--MGIDKP 295 (374)
Q Consensus 227 ~~~~~lVf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~-~~----~--~G~d~~ 295 (374)
.+.+++|.+|++.-+..+++.+++. +..+..++|+.+..+....+ .+..+|+|+|+ .+ . .++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 3457999999999999988887764 77888899987765444332 24578999996 22 1 345666
Q ss_pred CccEEEE
Q 037567 296 DVRHVIH 302 (374)
Q Consensus 296 ~~~~vi~ 302 (374)
.++++|.
T Consensus 186 ~~~~lVi 192 (249)
T 3ber_A 186 ALKYLVM 192 (249)
T ss_dssp TCCEEEE
T ss_pred ccCEEEE
Confidence 7777764
No 221
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=87.55 E-value=1.3 Score=33.44 Aligned_cols=75 Identities=9% Similarity=0.106 Sum_probs=52.9
Q ss_pred cCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhhh---hhhhcCCeeEEEEcCcccccCchhhHHHHHhcCcc
Q 037567 52 TGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQ---TKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVC 128 (374)
Q Consensus 52 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~ 128 (374)
...++||+++++..+..+.+.+...|..+..+++........ .....+...|+|+|. .+. ..+....++
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~-------~Gld~~~~~ 105 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-VAA-------RGIDIENIS 105 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-GGT-------TTCCCSCCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-hhh-------cCCchhcCC
Confidence 467899999999999999999999999988888766544322 233356788999993 222 223345566
Q ss_pred EEEEec
Q 037567 129 LFAVDE 134 (374)
Q Consensus 129 ~vviDE 134 (374)
+||.-+
T Consensus 106 ~Vi~~~ 111 (163)
T 2hjv_A 106 LVINYD 111 (163)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 666533
No 222
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=87.41 E-value=1.8 Score=36.51 Aligned_cols=31 Identities=29% Similarity=0.344 Sum_probs=19.2
Q ss_pred CEEEEccCCCCchhhhh-cccc--ccCCcEEEEc
Q 037567 30 DCLVVMATGSGKSLCYQ-LPPL--VTGKTALVVS 60 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~-l~~~--~~~~~~lil~ 60 (374)
-+.+.++.|+|||.... ++.. ..+.+++++-
T Consensus 100 ~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 100 LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp EEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 45678999999995533 2222 2456666653
No 223
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=87.27 E-value=0.49 Score=40.35 Aligned_cols=33 Identities=15% Similarity=0.140 Sum_probs=21.6
Q ss_pred CCCEEEEccCCCCchhhhhcc---cc-ccCCcEEEEc
Q 037567 28 KRDCLVVMATGSGKSLCYQLP---PL-VTGKTALVVS 60 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~---~~-~~~~~~lil~ 60 (374)
+.++++.||+|+|||..+... +. ..+.+++++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 468899999999999653221 22 3455565543
No 224
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=87.14 E-value=0.52 Score=41.23 Aligned_cols=32 Identities=25% Similarity=0.272 Sum_probs=21.2
Q ss_pred CCCEEEEccCCCCchhhhhccccccCCcEEEE
Q 037567 28 KRDCLVVMATGSGKSLCYQLPPLVTGKTALVV 59 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil 59 (374)
..++++.||||+|||..+-..+...+...+.+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~~~~~~~ 82 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLDVPFTMA 82 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEe
Confidence 46799999999999976543333334444444
No 225
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=87.09 E-value=0.44 Score=41.43 Aligned_cols=32 Identities=19% Similarity=0.181 Sum_probs=22.4
Q ss_pred hHHHHHHH--------HHcCCCE--EEEccCCCCchhhhhcc
Q 037567 17 YQKDVIQR--------IIEKRDC--LVVMATGSGKSLCYQLP 48 (374)
Q Consensus 17 ~Q~~~~~~--------~~~~~~~--l~~a~tGsGKT~~~~l~ 48 (374)
-|.+.+.. +++|.++ +..|.||||||.++.-+
T Consensus 84 sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~ 125 (359)
T 3nwn_A 84 SQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGA 125 (359)
T ss_dssp CHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBC
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEEeCCc
Confidence 46666544 4556654 66899999999987644
No 226
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=86.98 E-value=0.33 Score=50.94 Aligned_cols=89 Identities=16% Similarity=0.091 Sum_probs=49.2
Q ss_pred CCCEEEEccCCCCchhhhhccc---cccCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhhhhhhhcCCeeEE
Q 037567 28 KRDCLVVMATGSGKSLCYQLPP---LVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLL 104 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~---~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 104 (374)
+..+++.||+|+|||..++..+ ...+.+++++.--.. ..|.. ....|... -++.
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees-~~ql~--A~~lGvd~--------------------~~L~ 788 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA-LDPIY--ARKLGVDI--------------------DNLL 788 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSC-CCHHH--HHHTTCCG--------------------GGCE
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccch-HHHHH--HHHcCCCh--------------------hheE
Confidence 4567899999999996543222 234557777654432 23332 23333221 0234
Q ss_pred EEcCcccccCchhhHHHHHhcCccEEEEeccchhh
Q 037567 105 FMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCIS 139 (374)
Q Consensus 105 i~T~~~l~~~~~~~~~~~~~~~~~~vviDE~h~~~ 139 (374)
+..+..+..+............+++||||+...+.
T Consensus 789 i~~~~~leei~~~l~~lv~~~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 789 CSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 823 (1706)
T ss_dssp EECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred EecCCcHHHHHHHHHHHHHccCCCEEEEechhhhc
Confidence 55554443332222222223578999999999886
No 227
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=86.80 E-value=1.2 Score=39.42 Aligned_cols=19 Identities=16% Similarity=-0.034 Sum_probs=14.9
Q ss_pred CCCEEEEccCCCCchhhhh
Q 037567 28 KRDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~ 46 (374)
+.-+.+.+|+|+|||....
T Consensus 178 Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp TSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHH
Confidence 4567899999999995543
No 228
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=86.75 E-value=0.35 Score=40.00 Aligned_cols=25 Identities=12% Similarity=0.085 Sum_probs=18.2
Q ss_pred HHHHHcCC-----CEEEEccCCCCchhhhh
Q 037567 22 IQRIIEKR-----DCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 22 ~~~~~~~~-----~~l~~a~tGsGKT~~~~ 46 (374)
+..+++++ .+++.||+|+|||+.+.
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 44555543 47899999999997654
No 229
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=86.56 E-value=0.32 Score=41.30 Aligned_cols=18 Identities=28% Similarity=0.409 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
..++++.||+|+|||..+
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 568999999999999754
No 230
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=86.55 E-value=1 Score=41.42 Aligned_cols=45 Identities=13% Similarity=-0.017 Sum_probs=27.3
Q ss_pred CCCEEEEccCCCCchhhhhc---ccccc-CCcEEEEcchHHHHHHHHHHH
Q 037567 28 KRDCLVVMATGSGKSLCYQL---PPLVT-GKTALVVSPLISLMQDQVMSL 73 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l---~~~~~-~~~~lil~P~~~l~~q~~~~~ 73 (374)
|.-+++.|++|+|||...+- .+... +.+++++.--. -..|+...+
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~-s~~~l~~r~ 290 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE-SVEETAEDL 290 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS-CHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC-CHHHHHHHH
Confidence 45578999999999955332 22233 66788876532 234444443
No 231
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=86.43 E-value=0.29 Score=38.64 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=14.7
Q ss_pred cCCCEEEEccCCCCchhhh
Q 037567 27 EKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~ 45 (374)
.++-+.+.||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677899999999999653
No 232
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=86.33 E-value=0.28 Score=38.73 Aligned_cols=21 Identities=14% Similarity=0.059 Sum_probs=16.5
Q ss_pred HcCCCEEEEccCCCCchhhhh
Q 037567 26 IEKRDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 26 ~~~~~~l~~a~tGsGKT~~~~ 46 (374)
..++.+++.|++|||||...-
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHH
Confidence 346778999999999997643
No 233
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=86.27 E-value=1.8 Score=33.83 Aligned_cols=69 Identities=16% Similarity=0.108 Sum_probs=49.0
Q ss_pred CCCchhhhhcccc-ccCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhhh---hhhhcCCeeEEEEc
Q 037567 38 GSGKSLCYQLPPL-VTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQ---TKAETGYFQLLFMT 107 (374)
Q Consensus 38 GsGKT~~~~l~~~-~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~i~T 107 (374)
...|... +..++ ....++||+++++..++.+.+.+...|..+..+++........ .....+...|+|+|
T Consensus 39 ~~~K~~~-L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT 111 (191)
T 2p6n_A 39 EEAKMVY-LLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT 111 (191)
T ss_dssp GGGHHHH-HHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC
T ss_pred hHHHHHH-HHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc
Confidence 3455533 22233 3467899999999999999999999999988888766544322 23335678899999
No 234
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=86.20 E-value=4.5 Score=32.27 Aligned_cols=72 Identities=11% Similarity=0.149 Sum_probs=46.9
Q ss_pred CCCcEEEEecchhHHHHHHHHHHHc---CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEec-cc-----cccccccCc
Q 037567 227 GAGSIIVYCMTIKDVEEISKALKQL---GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM-AF-----GMGIDKPDV 297 (374)
Q Consensus 227 ~~~~~lVf~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~-~~-----~~G~d~~~~ 297 (374)
.+.+++|.+|++.-+.++++.+++. +..+..++|+.+..+....+ . ...+|+|+|+ .+ ...+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 5678999999999999999998874 66777888876654433222 2 3468999997 22 124556667
Q ss_pred cEEEE
Q 037567 298 RHVIH 302 (374)
Q Consensus 298 ~~vi~ 302 (374)
+++|.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 77663
No 235
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=86.12 E-value=0.27 Score=38.13 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCCCchhhh
Q 037567 27 EKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~ 45 (374)
.++-+++.||+|+|||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4566789999999999653
No 236
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=86.08 E-value=0.4 Score=39.75 Aligned_cols=18 Identities=28% Similarity=0.516 Sum_probs=15.7
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
+.++++.||+|+|||..+
T Consensus 29 ~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIA 46 (265)
T ss_dssp CSCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 578999999999999654
No 237
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=86.00 E-value=1.6 Score=32.99 Aligned_cols=57 Identities=11% Similarity=0.120 Sum_probs=44.6
Q ss_pred cCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhhh---hhhhcCCeeEEEEcC
Q 037567 52 TGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQ---TKAETGYFQLLFMTP 108 (374)
Q Consensus 52 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~i~T~ 108 (374)
...++||+++++..+..+...+...+..+..+++........ .....+...|+|+|.
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 88 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD 88 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 467899999999999999999999999888888766544332 233456788999993
No 238
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=85.97 E-value=1.8 Score=33.08 Aligned_cols=57 Identities=7% Similarity=-0.046 Sum_probs=44.8
Q ss_pred cCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhh---hhhhhcCCeeEEEEcC
Q 037567 52 TGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSV---QTKAETGYFQLLFMTP 108 (374)
Q Consensus 52 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~i~T~ 108 (374)
...++||+++++..+..+.+.+...|..+..+++....... ......+...|+|+|.
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~ 89 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN 89 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC
Confidence 45789999999999999999999999998888876654432 2233457789999993
No 239
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=85.95 E-value=0.56 Score=40.18 Aligned_cols=57 Identities=18% Similarity=0.148 Sum_probs=32.7
Q ss_pred chhHHHHHHH--------HHcCCCE--EEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHH
Q 037567 15 RPYQKDVIQR--------IIEKRDC--LVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 15 ~~~Q~~~~~~--------~~~~~~~--l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
..-|.+.+.. +++|.++ +..|.||||||.++.-..-.....- +.|+ .+.++++.+..
T Consensus 55 ~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~G--iipr--~~~~lF~~i~~ 121 (325)
T 1bg2_A 55 STSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMG--IIPR--IVQDIFNYIYS 121 (325)
T ss_dssp TCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBC--HHHH--HHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEecccCCCcccCc--cHHH--HHHHHHHHHHh
Confidence 3456665544 4567664 6689999999998764432222222 3354 34556665544
No 240
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=85.69 E-value=3.7 Score=31.24 Aligned_cols=15 Identities=33% Similarity=0.113 Sum_probs=12.3
Q ss_pred CEEEEccCCCCchhh
Q 037567 30 DCLVVMATGSGKSLC 44 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~ 44 (374)
-+.+.|+.|||||..
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 357899999999964
No 241
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=85.66 E-value=3.1 Score=42.04 Aligned_cols=74 Identities=15% Similarity=0.231 Sum_probs=56.0
Q ss_pred cCCCcEEEEecchhHHHHHHHHHHHc----CC----ceeeeecCCChHHHHHHHHhhhcCCeeEEEEec-ccccccc-cc
Q 037567 226 AGAGSIIVYCMTIKDVEEISKALKQL----GV----KAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM-AFGMGID-KP 295 (374)
Q Consensus 226 ~~~~~~lVf~~~~~~~~~l~~~l~~~----~~----~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~-~~~~G~d-~~ 295 (374)
..+.+++|.+|++.-+.++++.+++. +. .+..++|+.+..++....+.+.. .+|+|+|+ .+..-+. +.
T Consensus 97 ~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~ 174 (1054)
T 1gku_B 97 LKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELG 174 (1054)
T ss_dssp TTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSC
T ss_pred hcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhc
Confidence 35678999999999999999888763 45 78899999998887777777766 89999998 3322222 44
Q ss_pred CccEEE
Q 037567 296 DVRHVI 301 (374)
Q Consensus 296 ~~~~vi 301 (374)
.++++|
T Consensus 175 ~l~~lV 180 (1054)
T 1gku_B 175 HFDFIF 180 (1054)
T ss_dssp CCSEEE
T ss_pred cCCEEE
Confidence 566666
No 242
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=85.42 E-value=0.29 Score=40.69 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=15.1
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
.+.+++.||+|+|||..+
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 356899999999999764
No 243
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=85.36 E-value=5.1 Score=31.99 Aligned_cols=127 Identities=15% Similarity=0.184 Sum_probs=74.8
Q ss_pred hHcCCCCCchhHHHHHHHHHc--CCC---EEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHHcCCc--
Q 037567 7 KYFGYSVFRPYQKDVIQRIIE--KRD---CLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGIN-- 79 (374)
Q Consensus 7 ~~~~~~~~~~~Q~~~~~~~~~--~~~---~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~-- 79 (374)
...|+..+.|.+.+.+..+.. +.. -++...||+|-+..++...+..+.++.-+=.....+....+.+...|..
T Consensus 30 ~~~~~p~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~ 109 (221)
T 3dr5_A 30 AEFGLPAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPS 109 (221)
T ss_dssp HHTTCCCCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGG
T ss_pred HHcCCCCCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcC
Confidence 346777788888888877754 222 6778999999876665555545677777777777777777777776653
Q ss_pred -eEEcCCCCCchhhhhhhhcCCeeEEEEcCcccccCchhhHHHH--HhcCccEEEEeccch
Q 037567 80 -AEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKL--LKAGVCLFAVDEAHC 137 (374)
Q Consensus 80 -~~~~~~~~~~~~~~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~--~~~~~~~vviDE~h~ 137 (374)
+.+..+.... .......+.+|+++.....-. . ....... .+..=.++++|++..
T Consensus 110 ~i~~~~gda~~--~l~~~~~~~fD~V~~d~~~~~-~-~~~l~~~~~~LkpGG~lv~dn~~~ 166 (221)
T 3dr5_A 110 RVRFLLSRPLD--VMSRLANDSYQLVFGQVSPMD-L-KALVDAAWPLLRRGGALVLADALL 166 (221)
T ss_dssp GEEEECSCHHH--HGGGSCTTCEEEEEECCCTTT-H-HHHHHHHHHHEEEEEEEEETTTTG
T ss_pred cEEEEEcCHHH--HHHHhcCCCcCeEEEcCcHHH-H-HHHHHHHHHHcCCCcEEEEeCCCC
Confidence 5554433211 111111356888887654211 1 1111111 122335788888764
No 244
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=85.32 E-value=3.4 Score=37.55 Aligned_cols=30 Identities=23% Similarity=0.259 Sum_probs=19.5
Q ss_pred CEEEEccCCCCchhhhhcc-cc--ccCCcEEEE
Q 037567 30 DCLVVMATGSGKSLCYQLP-PL--VTGKTALVV 59 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~l~-~~--~~~~~~lil 59 (374)
-+.+.|++|+|||...... .+ ..++++++.
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 4578999999999654322 11 235667775
No 245
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=85.20 E-value=0.43 Score=41.71 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=17.8
Q ss_pred HHHcCCCEEEEccCCCCchhhh
Q 037567 24 RIIEKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 24 ~~~~~~~~l~~a~tGsGKT~~~ 45 (374)
.+..|..+++.||||||||...
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHH
T ss_pred HHhcCCEEEEECCCCCCHHHHH
Confidence 3446889999999999999653
No 246
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=85.16 E-value=0.54 Score=41.94 Aligned_cols=30 Identities=37% Similarity=0.416 Sum_probs=21.0
Q ss_pred chhHHHHHHHHHc--CCCEEEEccCCCCchhh
Q 037567 15 RPYQKDVIQRIIE--KRDCLVVMATGSGKSLC 44 (374)
Q Consensus 15 ~~~Q~~~~~~~~~--~~~~l~~a~tGsGKT~~ 44 (374)
.+-+..++..++. +.-+++.||||||||..
T Consensus 152 ~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 152 TAHNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp CHHHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 3445566666654 33468999999999965
No 247
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=85.11 E-value=0.64 Score=40.26 Aligned_cols=39 Identities=21% Similarity=0.200 Sum_probs=25.3
Q ss_pred cCCCC---CchhHHHHHH--------HHHcCCCE--EEEccCCCCchhhhhc
Q 037567 9 FGYSV---FRPYQKDVIQ--------RIIEKRDC--LVVMATGSGKSLCYQL 47 (374)
Q Consensus 9 ~~~~~---~~~~Q~~~~~--------~~~~~~~~--l~~a~tGsGKT~~~~l 47 (374)
|.|+. +..-|.+.+. .+++|.++ +..|.||||||.++.-
T Consensus 46 F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G 97 (349)
T 1t5c_A 46 FNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMG 97 (349)
T ss_dssp EECSCEECTTSCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTB
T ss_pred EECCEEECCCCCHHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeEEec
Confidence 44553 3335666554 34567654 6689999999998754
No 248
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=85.10 E-value=0.63 Score=40.38 Aligned_cols=33 Identities=24% Similarity=0.196 Sum_probs=22.8
Q ss_pred hhHHHHHH--------HHHcCCCE--EEEccCCCCchhhhhcc
Q 037567 16 PYQKDVIQ--------RIIEKRDC--LVVMATGSGKSLCYQLP 48 (374)
Q Consensus 16 ~~Q~~~~~--------~~~~~~~~--l~~a~tGsGKT~~~~l~ 48 (374)
.-|.+.+. .+++|.++ +..|.||||||.++.-.
T Consensus 71 a~Q~~vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~ 113 (354)
T 3gbj_A 71 AGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGT 113 (354)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBC
T ss_pred ccHHHHHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceEEecC
Confidence 34766553 44567665 66889999999987543
No 249
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=85.09 E-value=0.34 Score=37.51 Aligned_cols=41 Identities=20% Similarity=0.034 Sum_probs=23.9
Q ss_pred EEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHH
Q 037567 31 CLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMS 72 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~ 72 (374)
+++.|++|||||..+.-.+.. +.+++++......-.++.+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~~d~e~~~r 42 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQILDDEMAAR 42 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC------CH
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCCCCHHHHHH
Confidence 578999999999654433333 56778877755443333333
No 250
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=85.08 E-value=0.64 Score=40.60 Aligned_cols=58 Identities=14% Similarity=0.155 Sum_probs=32.6
Q ss_pred CchhHHHHHHH--------HHcCCCE--EEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHH
Q 037567 14 FRPYQKDVIQR--------IIEKRDC--LVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 14 ~~~~Q~~~~~~--------~~~~~~~--l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
+..-|.+.+.. +++|.++ +..|.||||||.++.-..-.....- ++|+ .+.+++..+..
T Consensus 78 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~G--iipr--~~~~lF~~i~~ 145 (372)
T 3b6u_A 78 WNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRG--VIPN--SFDHIFTHISR 145 (372)
T ss_dssp TTCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBC--HHHH--HHHHHHHHHHT
T ss_pred CcCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeEecCCCCcccCC--cHHH--HHHHHHHHhhh
Confidence 34456666654 4567654 5688999999998754321111111 2344 34556666553
No 251
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=85.07 E-value=0.65 Score=39.87 Aligned_cols=48 Identities=13% Similarity=0.188 Sum_probs=29.0
Q ss_pred HHHHHHcCCCE--EEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHH
Q 037567 21 VIQRIIEKRDC--LVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 21 ~~~~~~~~~~~--l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
.+..+++|.++ +..|.||||||.++.-.-- ..- +.|+ .+.+++..+..
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~---~~G--iipr--~~~~lF~~i~~ 121 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAE---NPG--INQR--ALQLLFSEVQE 121 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHHTBCSS---SBC--HHHH--HHHHHHHHHHT
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEEecCCC---CCc--HHHH--HHHHHHHhhhc
Confidence 34456677765 5689999999998754321 111 2344 34556666654
No 252
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=85.00 E-value=0.66 Score=40.18 Aligned_cols=40 Identities=18% Similarity=0.270 Sum_probs=26.4
Q ss_pred cCCCC---CchhHHHHHHH--------HHcCCCE--EEEccCCCCchhhhhcc
Q 037567 9 FGYSV---FRPYQKDVIQR--------IIEKRDC--LVVMATGSGKSLCYQLP 48 (374)
Q Consensus 9 ~~~~~---~~~~Q~~~~~~--------~~~~~~~--l~~a~tGsGKT~~~~l~ 48 (374)
|.|+. +..-|.+.+.. +++|.++ +..|.||||||.++.-.
T Consensus 58 f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~ 110 (350)
T 2vvg_A 58 FTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGN 110 (350)
T ss_dssp EECSEEECTTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBC
T ss_pred eeCCEEECCCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEeecC
Confidence 55553 34457666643 4567654 66899999999987543
No 253
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=84.93 E-value=0.35 Score=37.50 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCCchhhhh
Q 037567 28 KRDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~ 46 (374)
.+.+++.|++|||||...-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4568899999999997643
No 254
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=84.93 E-value=7.5 Score=33.83 Aligned_cols=72 Identities=25% Similarity=0.419 Sum_probs=52.1
Q ss_pred CCCcEEEEecchhHHHHHHHHHHHc-----CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEec-cc-----ccccccc
Q 037567 227 GAGSIIVYCMTIKDVEEISKALKQL-----GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM-AF-----GMGIDKP 295 (374)
Q Consensus 227 ~~~~~lVf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~-~~-----~~G~d~~ 295 (374)
.+.++||.+|++.-+..+++.+++. +..+..++|+.+..+.... +..+..+|+|+|+ .+ ...+++.
T Consensus 75 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~ 151 (391)
T 1xti_A 75 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLK 151 (391)
T ss_dssp TCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCcccc
Confidence 3568999999999999998888774 6788899998876555443 3446678999997 22 1234556
Q ss_pred CccEEE
Q 037567 296 DVRHVI 301 (374)
Q Consensus 296 ~~~~vi 301 (374)
+++.||
T Consensus 152 ~~~~vV 157 (391)
T 1xti_A 152 HIKHFI 157 (391)
T ss_dssp TCSEEE
T ss_pred ccCEEE
Confidence 666666
No 255
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=84.91 E-value=0.3 Score=38.74 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=16.9
Q ss_pred HHcCCCEEEEccCCCCchhhh
Q 037567 25 IIEKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 25 ~~~~~~~l~~a~tGsGKT~~~ 45 (374)
+..+.-+++.||+|||||...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 345778899999999999653
No 256
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=84.81 E-value=0.67 Score=40.27 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=31.1
Q ss_pred hHHHHHHH--------HHcCCCE--EEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHH
Q 037567 17 YQKDVIQR--------IIEKRDC--LVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 17 ~Q~~~~~~--------~~~~~~~--l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
-|.+.+.. +++|.++ +..|.||||||.++.-..-....+- +.|+ .+.++++.+..
T Consensus 83 sQ~~Vy~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~G--iipr--a~~~lF~~i~~ 147 (358)
T 2nr8_A 83 SQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRG--ILPR--ALQQVFRMIEE 147 (358)
T ss_dssp CHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBC--HHHH--HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCceEecccccccccCC--cHHH--HHHHHHHHHhh
Confidence 46555544 4567665 5688999999998754322111112 2344 34556666554
No 257
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=84.78 E-value=0.35 Score=36.93 Aligned_cols=18 Identities=39% Similarity=0.362 Sum_probs=14.2
Q ss_pred CEEEEccCCCCchhhhhc
Q 037567 30 DCLVVMATGSGKSLCYQL 47 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~l 47 (374)
-+++.|++|||||...-.
T Consensus 3 ~I~l~G~~GsGKsT~a~~ 20 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKL 20 (179)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367899999999976543
No 258
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=84.69 E-value=0.37 Score=37.09 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=14.6
Q ss_pred CCEEEEccCCCCchhhhh
Q 037567 29 RDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~ 46 (374)
.-+++.|++|||||...-
T Consensus 4 ~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457899999999997643
No 259
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=84.65 E-value=0.69 Score=40.30 Aligned_cols=59 Identities=15% Similarity=0.093 Sum_probs=33.9
Q ss_pred CchhHHHHHHH--------HHcCCCE--EEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHHc
Q 037567 14 FRPYQKDVIQR--------IIEKRDC--LVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQR 76 (374)
Q Consensus 14 ~~~~Q~~~~~~--------~~~~~~~--l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 76 (374)
+..-|.+.+.. +++|.++ +..|.||||||.++.-..-.....- +.|+ .+.+++..+...
T Consensus 61 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~G--iipr--~~~~lF~~i~~~ 129 (365)
T 2y65_A 61 PNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQG--IIPR--IVNDIFNHIYAM 129 (365)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBC--HHHH--HHHHHHHHHHHC
T ss_pred CCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEEecCCCCcccCC--hHHH--HHHHHHHHHHhc
Confidence 34456666544 4567654 6689999999998754322222222 2354 345566666543
No 260
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=84.64 E-value=0.6 Score=40.29 Aligned_cols=33 Identities=30% Similarity=0.405 Sum_probs=22.6
Q ss_pred CchhHHHHHHH--------HHcCCCE--EEEccCCCCchhhhh
Q 037567 14 FRPYQKDVIQR--------IIEKRDC--LVVMATGSGKSLCYQ 46 (374)
Q Consensus 14 ~~~~Q~~~~~~--------~~~~~~~--l~~a~tGsGKT~~~~ 46 (374)
+..-|.+.+.. +++|.++ +..|.||||||.++.
T Consensus 71 ~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~ 113 (344)
T 3dc4_A 71 ATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMG 113 (344)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHHT
T ss_pred CCCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEEc
Confidence 33456666654 3456654 668999999999864
No 261
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=84.52 E-value=0.68 Score=41.00 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=18.6
Q ss_pred HHHHHcCCCE--EEEccCCCCchhhhh
Q 037567 22 IQRIIEKRDC--LVVMATGSGKSLCYQ 46 (374)
Q Consensus 22 ~~~~~~~~~~--l~~a~tGsGKT~~~~ 46 (374)
++.+++|.++ +..|.||||||.++.
T Consensus 133 v~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 133 VQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHhCCcceEEEEECCCCCCCceEeC
Confidence 3445567665 568899999999875
No 262
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=84.50 E-value=0.65 Score=40.32 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=23.1
Q ss_pred chhHHHHHH--------HHHcCCCE--EEEccCCCCchhhhhcc
Q 037567 15 RPYQKDVIQ--------RIIEKRDC--LVVMATGSGKSLCYQLP 48 (374)
Q Consensus 15 ~~~Q~~~~~--------~~~~~~~~--l~~a~tGsGKT~~~~l~ 48 (374)
..-|.+.+. .+++|.++ +..|.||||||.++.-.
T Consensus 83 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~ 126 (355)
T 3lre_A 83 TSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGS 126 (355)
T ss_dssp TCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBC
T ss_pred CCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccC
Confidence 335666654 34567654 66889999999987543
No 263
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=84.47 E-value=0.66 Score=40.28 Aligned_cols=57 Identities=19% Similarity=0.217 Sum_probs=32.6
Q ss_pred chhHHHHHHH--------HHcCCCE--EEEccCCCCchhhhhccccc-cCCcEEEEcchHHHHHHHHHHHHH
Q 037567 15 RPYQKDVIQR--------IIEKRDC--LVVMATGSGKSLCYQLPPLV-TGKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 15 ~~~Q~~~~~~--------~~~~~~~--l~~a~tGsGKT~~~~l~~~~-~~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
..-|.+.+.. +++|.++ +..|.||||||.++.-.-.. ....- +.|+ .+.+++..+..
T Consensus 58 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~G--iipr--~~~~lF~~i~~ 125 (355)
T 1goj_A 58 SCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRG--VIPR--IVEQIFTSILS 125 (355)
T ss_dssp TCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHHTBSCTTSTTTBC--HHHH--HHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEeecCCCCCcccCC--chHH--HHHHHHHHHHh
Confidence 3457666653 4456654 66899999999987543211 11122 2344 44556666554
No 264
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=84.41 E-value=0.71 Score=40.26 Aligned_cols=55 Identities=22% Similarity=0.248 Sum_probs=32.1
Q ss_pred hhHHHHHHH--------HHcCCCE--EEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHH
Q 037567 16 PYQKDVIQR--------IIEKRDC--LVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 16 ~~Q~~~~~~--------~~~~~~~--l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
.-|.+.+.. +++|.++ +..|.||||||.++.-.--. ...- ++|+ .+.+++..+..
T Consensus 68 asQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~-~~~G--iipr--~~~~lF~~i~~ 132 (366)
T 2zfi_A 68 ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEK-DQQG--IIPQ--LCEDLFSRIND 132 (366)
T ss_dssp CCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSGG-GCBC--HHHH--HHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceEeeCCCcc-CCCc--cHHH--HHHHHHHHHhh
Confidence 347666543 4567654 56889999999986543211 1111 2354 45566666654
No 265
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=84.40 E-value=3 Score=35.22 Aligned_cols=30 Identities=20% Similarity=0.166 Sum_probs=18.6
Q ss_pred EEEEccCCCCchhhhhccc---cccCCcEEEEc
Q 037567 31 CLVVMATGSGKSLCYQLPP---LVTGKTALVVS 60 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~~l~~---~~~~~~~lil~ 60 (374)
+.+.+++|+|||.+....+ ...+.+++++.
T Consensus 101 i~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 101 IMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp EEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 5678999999996543221 12456666543
No 266
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=84.34 E-value=0.46 Score=36.28 Aligned_cols=18 Identities=39% Similarity=0.477 Sum_probs=15.1
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
+..+.+.|++|||||...
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456899999999999654
No 267
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=84.27 E-value=4.9 Score=32.24 Aligned_cols=70 Identities=16% Similarity=0.208 Sum_probs=48.1
Q ss_pred CCCcEEEEecchhHHHHHHHHHHHc----CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEec-ccc----c--ccccc
Q 037567 227 GAGSIIVYCMTIKDVEEISKALKQL----GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM-AFG----M--GIDKP 295 (374)
Q Consensus 227 ~~~~~lVf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~-~~~----~--G~d~~ 295 (374)
.+.+++|.+|++.-+..+++.+++. +..+..++|+.+.......+ +..+|+|+|+ .+. . .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 4678999999999999999988875 36778888887655443332 3578999997 221 1 24556
Q ss_pred CccEEE
Q 037567 296 DVRHVI 301 (374)
Q Consensus 296 ~~~~vi 301 (374)
+++++|
T Consensus 171 ~~~~lV 176 (236)
T 2pl3_A 171 DLQMLV 176 (236)
T ss_dssp TCCEEE
T ss_pred cccEEE
Confidence 666666
No 268
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=84.27 E-value=0.33 Score=40.30 Aligned_cols=20 Identities=40% Similarity=0.273 Sum_probs=15.9
Q ss_pred HcCCCEEEEccCCCCchhhh
Q 037567 26 IEKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 26 ~~~~~~l~~a~tGsGKT~~~ 45 (374)
..+.-+++.||+|||||...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 34666789999999999653
No 269
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=84.21 E-value=0.49 Score=41.57 Aligned_cols=19 Identities=47% Similarity=0.632 Sum_probs=15.8
Q ss_pred CCCEEEEccCCCCchhhhh
Q 037567 28 KRDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~ 46 (374)
..++++.||+|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4579999999999997653
No 270
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=84.20 E-value=0.64 Score=40.44 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=23.2
Q ss_pred chhHHHHHHH--------HHcCCCE--EEEccCCCCchhhhhcc
Q 037567 15 RPYQKDVIQR--------IIEKRDC--LVVMATGSGKSLCYQLP 48 (374)
Q Consensus 15 ~~~Q~~~~~~--------~~~~~~~--l~~a~tGsGKT~~~~l~ 48 (374)
..-|.+.+.. +++|.++ +..|.||||||.++.-.
T Consensus 66 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~ 109 (359)
T 1x88_A 66 STKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGE 109 (359)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHHTBC
T ss_pred cCchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEEecc
Confidence 3456666654 3456654 66899999999987543
No 271
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=84.19 E-value=4.2 Score=31.76 Aligned_cols=72 Identities=18% Similarity=0.092 Sum_probs=50.0
Q ss_pred CCCcEEEEecchhHHHHHHHHHHHc--CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEec-cc----c-ccccccCcc
Q 037567 227 GAGSIIVYCMTIKDVEEISKALKQL--GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM-AF----G-MGIDKPDVR 298 (374)
Q Consensus 227 ~~~~~lVf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~-~~----~-~G~d~~~~~ 298 (374)
.+.+++|.+|++..+..+++.+++. +..+..++|+.+.......+. ...+|+|+|+ .+ . ..+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 4568999999999999999999875 456778888876544333322 2468999997 21 1 234566677
Q ss_pred EEEE
Q 037567 299 HVIH 302 (374)
Q Consensus 299 ~vi~ 302 (374)
.+|.
T Consensus 147 ~iVi 150 (207)
T 2gxq_A 147 VAVL 150 (207)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7664
No 272
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=84.01 E-value=0.37 Score=42.12 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=14.6
Q ss_pred CCEEEEccCCCCchhhh
Q 037567 29 RDCLVVMATGSGKSLCY 45 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~ 45 (374)
+.+++.||+|+|||..+
T Consensus 71 ~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CEEEEEESTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46899999999999654
No 273
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=84.00 E-value=0.41 Score=41.15 Aligned_cols=18 Identities=33% Similarity=0.305 Sum_probs=14.4
Q ss_pred CCEEEEccCCCCchhhhh
Q 037567 29 RDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~ 46 (374)
+-++|.||||+|||....
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 357899999999996543
No 274
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=83.97 E-value=0.42 Score=38.04 Aligned_cols=19 Identities=16% Similarity=0.100 Sum_probs=15.1
Q ss_pred cCCCEEEEccCCCCchhhh
Q 037567 27 EKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~ 45 (374)
.+.-+++.||+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 3556788999999999654
No 275
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=83.91 E-value=0.34 Score=37.80 Aligned_cols=19 Identities=32% Similarity=0.176 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCCchhhh
Q 037567 27 EKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~ 45 (374)
.|..+++.||+|||||...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp TTEEEEEEECTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4566789999999999654
No 276
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=83.87 E-value=0.76 Score=39.73 Aligned_cols=33 Identities=27% Similarity=0.231 Sum_probs=22.8
Q ss_pred CchhHHHHHHH--------HHcCCCE--EEEccCCCCchhhhh
Q 037567 14 FRPYQKDVIQR--------IIEKRDC--LVVMATGSGKSLCYQ 46 (374)
Q Consensus 14 ~~~~Q~~~~~~--------~~~~~~~--l~~a~tGsGKT~~~~ 46 (374)
+..-|.+.+.. +++|.++ +..|.||||||.++.
T Consensus 60 ~~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 102 (344)
T 4a14_A 60 EDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMG 102 (344)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHHC
T ss_pred cCcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEeec
Confidence 34456666654 3457654 668899999999864
No 277
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=83.85 E-value=2.3 Score=33.83 Aligned_cols=57 Identities=16% Similarity=0.149 Sum_probs=45.5
Q ss_pred cCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhhh---hhhhcCCeeEEEEcC
Q 037567 52 TGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQ---TKAETGYFQLLFMTP 108 (374)
Q Consensus 52 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~i~T~ 108 (374)
...++||+++++.-++.+.+.+...|..+..+++........ .....+..+|+|+|.
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~ 89 (212)
T 3eaq_A 30 SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD 89 (212)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC
Confidence 477999999999999999999999999988888876554432 233457789999993
No 278
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=83.72 E-value=0.61 Score=40.69 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=28.6
Q ss_pred HHHHHcCCCE--EEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHHc
Q 037567 22 IQRIIEKRDC--LVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQR 76 (374)
Q Consensus 22 ~~~~~~~~~~--l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 76 (374)
++.+++|.++ +..|.||||||.++.-.- ...- +.|+ .+.++++.+...
T Consensus 72 v~~~l~G~n~tifAYGqTGSGKTyTM~G~~---~~~G--iipr--~~~~lF~~i~~~ 121 (369)
T 3cob_A 72 VQSAVDGYNVCIFAYGQTGSGKTFTIYGAD---SNPG--LTPR--AMSELFRIMKKD 121 (369)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHHTBCS---SSBC--HHHH--HHHHHHHHHHHT
T ss_pred hHhhhcCCceEEEEECCCCCCCeEeecCCC---CCCc--hhHH--HHHHHHHHHHhh
Confidence 3445667664 568899999999875432 1122 2354 345566666543
No 279
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=83.71 E-value=0.51 Score=36.37 Aligned_cols=20 Identities=20% Similarity=0.167 Sum_probs=16.4
Q ss_pred cCCCEEEEccCCCCchhhhh
Q 037567 27 EKRDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~~ 46 (374)
.+..+++.|++|||||...-
T Consensus 10 ~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHH
Confidence 45678999999999997543
No 280
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=83.70 E-value=0.68 Score=40.95 Aligned_cols=34 Identities=24% Similarity=0.136 Sum_probs=23.3
Q ss_pred CchhHHHHHHH--------HHcCCCE--EEEccCCCCchhhhhc
Q 037567 14 FRPYQKDVIQR--------IIEKRDC--LVVMATGSGKSLCYQL 47 (374)
Q Consensus 14 ~~~~Q~~~~~~--------~~~~~~~--l~~a~tGsGKT~~~~l 47 (374)
+..-|.+.+.. +++|.++ +..|.||||||.++.-
T Consensus 131 ~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~G 174 (410)
T 1v8k_A 131 ETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGG 174 (410)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHC
T ss_pred cCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEeec
Confidence 34456666643 4566654 6688999999998754
No 281
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=83.65 E-value=1.8 Score=33.51 Aligned_cols=73 Identities=14% Similarity=0.023 Sum_probs=46.5
Q ss_pred cCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhh---hhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCcc
Q 037567 52 TGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSV---QTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVC 128 (374)
Q Consensus 52 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~ 128 (374)
...++||+++++..+..+.+.+...|..+..+++....... ......+...|+|+|. .+. ..+....++
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~-------~Gldi~~~~ 116 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-VAA-------RGLDISNVK 116 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC--------------CCCSBS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-hhh-------cCCCcccCC
Confidence 46789999999999999999999999988888776544332 2233456788999993 221 334455667
Q ss_pred EEEE
Q 037567 129 LFAV 132 (374)
Q Consensus 129 ~vvi 132 (374)
+||.
T Consensus 117 ~VI~ 120 (185)
T 2jgn_A 117 HVIN 120 (185)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6665
No 282
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=83.64 E-value=4 Score=37.26 Aligned_cols=32 Identities=19% Similarity=0.181 Sum_probs=21.1
Q ss_pred CEEEEccCCCCchhhhhccc--c-ccCCcEEEEcc
Q 037567 30 DCLVVMATGSGKSLCYQLPP--L-VTGKTALVVSP 61 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~l~~--~-~~~~~~lil~P 61 (374)
.+++.+++|+|||.+....+ + ..+.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 36788999999996543222 1 23667777765
No 283
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=83.60 E-value=0.7 Score=40.97 Aligned_cols=27 Identities=26% Similarity=0.333 Sum_probs=20.1
Q ss_pred HHHHHHcCCCE--EEEccCCCCchhhhhc
Q 037567 21 VIQRIIEKRDC--LVVMATGSGKSLCYQL 47 (374)
Q Consensus 21 ~~~~~~~~~~~--l~~a~tGsGKT~~~~l 47 (374)
.++.+++|.++ +..|.||||||.++.-
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM~G 158 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTMDG 158 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHHTE
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEecC
Confidence 44556677765 5688999999998753
No 284
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=83.58 E-value=0.51 Score=40.64 Aligned_cols=20 Identities=35% Similarity=0.473 Sum_probs=16.9
Q ss_pred HHcCCCEEEEccCCCCchhh
Q 037567 25 IIEKRDCLVVMATGSGKSLC 44 (374)
Q Consensus 25 ~~~~~~~l~~a~tGsGKT~~ 44 (374)
+..+..+.+.||+|||||..
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 34588999999999999964
No 285
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=83.57 E-value=2 Score=38.67 Aligned_cols=55 Identities=15% Similarity=0.088 Sum_probs=40.2
Q ss_pred CCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhhhhhhhcCCeeEEEEcC
Q 037567 53 GKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTP 108 (374)
Q Consensus 53 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~ 108 (374)
+.+++|+||++.-++.+.+.++..+..+..+++. ...........+..+|+|+|.
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~-~R~~~~~~F~~g~~~vLVaT~ 231 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRK-TFEREYPTIKQKKPDFILATD 231 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSS-SCC--------CCCSEEEESS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecch-hHHHHHhhhcCCCceEEEECC
Confidence 6789999999999999999999999888888873 333333444567789999994
No 286
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=83.52 E-value=0.73 Score=40.30 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=23.4
Q ss_pred chhHHHHHHH--------HHcCCCE--EEEccCCCCchhhhhcc
Q 037567 15 RPYQKDVIQR--------IIEKRDC--LVVMATGSGKSLCYQLP 48 (374)
Q Consensus 15 ~~~Q~~~~~~--------~~~~~~~--l~~a~tGsGKT~~~~l~ 48 (374)
..-|.+.+.. +++|.++ +..|.||||||.++.-.
T Consensus 78 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~ 121 (373)
T 2wbe_C 78 ESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGN 121 (373)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHTBS
T ss_pred ccchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCcceecccC
Confidence 3457666654 3456654 66889999999987543
No 287
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=83.47 E-value=0.4 Score=37.81 Aligned_cols=19 Identities=16% Similarity=0.293 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCCCchhhh
Q 037567 27 EKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~ 45 (374)
.|.-+.+.||+|||||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4666789999999999653
No 288
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=83.38 E-value=0.53 Score=36.70 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=13.8
Q ss_pred CCEEEEccCCCCchhh
Q 037567 29 RDCLVVMATGSGKSLC 44 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~ 44 (374)
+.+++.||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4689999999999964
No 289
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=83.21 E-value=0.61 Score=41.96 Aligned_cols=40 Identities=33% Similarity=0.414 Sum_probs=29.5
Q ss_pred CCCEEEEccCCCCchhhh--hcc-ccccCCcEEEEcchHHHHH
Q 037567 28 KRDCLVVMATGSGKSLCY--QLP-PLVTGKTALVVSPLISLMQ 67 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~--~l~-~~~~~~~~lil~P~~~l~~ 67 (374)
..++++.|+||||||... ++. ++..+..++|+=|..+...
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 467899999999999764 222 2335778888888877764
No 290
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=83.07 E-value=0.46 Score=36.51 Aligned_cols=16 Identities=38% Similarity=0.326 Sum_probs=13.3
Q ss_pred CEEEEccCCCCchhhh
Q 037567 30 DCLVVMATGSGKSLCY 45 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~ 45 (374)
-+++.|++|||||..+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3678999999999754
No 291
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=83.05 E-value=0.41 Score=37.66 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=14.3
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
++.+++.||||+|||..+
T Consensus 34 g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TEEEEEECCCTTTTHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 455789999999999543
No 292
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=82.97 E-value=0.49 Score=36.76 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
+..+++.|++|||||...
T Consensus 10 ~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 10 GINILITGTPGTGKTSMA 27 (184)
T ss_dssp SCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 556899999999999754
No 293
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=82.88 E-value=0.44 Score=43.17 Aligned_cols=18 Identities=28% Similarity=0.373 Sum_probs=15.3
Q ss_pred CCEEEEccCCCCchhhhh
Q 037567 29 RDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~ 46 (374)
+++++.||+|+|||..+.
T Consensus 64 ~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcCCHHHHHH
Confidence 579999999999997643
No 294
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=82.84 E-value=0.88 Score=40.78 Aligned_cols=53 Identities=23% Similarity=0.246 Sum_probs=32.1
Q ss_pred hhHHHHHHH--------HHcCCCE--EEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHH
Q 037567 16 PYQKDVIQR--------IIEKRDC--LVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQ 75 (374)
Q Consensus 16 ~~Q~~~~~~--------~~~~~~~--l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~ 75 (374)
.-|.+.+.. +++|.++ +..|.||||||.++.-.- ...- +.|+ .+.+++..+..
T Consensus 115 asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~---~~~G--Iipr--~~~~lF~~i~~ 177 (443)
T 2owm_A 115 ATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTP---DQPG--LIPR--TCEDLFQRIAS 177 (443)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCT---TSCC--HHHH--HHHHHHHHHHH
T ss_pred CCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCC---CCCc--hHHH--HHHHHHHHHHh
Confidence 457776654 3567654 668899999999875431 1122 2354 35556666654
No 295
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=82.69 E-value=0.64 Score=40.77 Aligned_cols=40 Identities=23% Similarity=0.373 Sum_probs=27.2
Q ss_pred cCCCC---CchhHHHHHHH--------HHcCCCE--EEEccCCCCchhhhhcc
Q 037567 9 FGYSV---FRPYQKDVIQR--------IIEKRDC--LVVMATGSGKSLCYQLP 48 (374)
Q Consensus 9 ~~~~~---~~~~Q~~~~~~--------~~~~~~~--l~~a~tGsGKT~~~~l~ 48 (374)
|.|+. +..-|.+.+.. +++|.++ +..|.||||||.++.-.
T Consensus 67 f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM~G~ 119 (388)
T 3bfn_A 67 YQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGS 119 (388)
T ss_dssp EECSEEECTTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHHTBC
T ss_pred EEcceEecCCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEeecC
Confidence 44553 44568887764 3456654 56899999999987543
No 296
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=82.66 E-value=0.49 Score=36.03 Aligned_cols=16 Identities=13% Similarity=-0.222 Sum_probs=13.3
Q ss_pred CEEEEccCCCCchhhh
Q 037567 30 DCLVVMATGSGKSLCY 45 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~ 45 (374)
.+++.|++|||||...
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3688999999999754
No 297
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=82.60 E-value=0.79 Score=40.20 Aligned_cols=34 Identities=24% Similarity=0.136 Sum_probs=22.8
Q ss_pred CchhHHHHHHH--------HHcCCCE--EEEccCCCCchhhhhc
Q 037567 14 FRPYQKDVIQR--------IIEKRDC--LVVMATGSGKSLCYQL 47 (374)
Q Consensus 14 ~~~~Q~~~~~~--------~~~~~~~--l~~a~tGsGKT~~~~l 47 (374)
+..-|.+.+.. +++|.++ +..|.||||||.++.-
T Consensus 111 ~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G 154 (387)
T 2heh_A 111 ETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGG 154 (387)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC-
T ss_pred cCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEecc
Confidence 34456666653 4566654 6688999999998654
No 298
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=82.53 E-value=0.46 Score=37.50 Aligned_cols=19 Identities=16% Similarity=0.114 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCCchhhh
Q 037567 27 EKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~ 45 (374)
.+.-+.+.||+|||||...
T Consensus 5 ~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4666789999999999654
No 299
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=82.51 E-value=0.48 Score=39.03 Aligned_cols=15 Identities=33% Similarity=0.189 Sum_probs=12.8
Q ss_pred EEEEccCCCCchhhh
Q 037567 31 CLVVMATGSGKSLCY 45 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~ 45 (374)
+++.||||||||..+
T Consensus 4 i~I~G~~GSGKSTla 18 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCcCHHHHH
Confidence 578999999999654
No 300
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=82.49 E-value=5.1 Score=31.28 Aligned_cols=72 Identities=17% Similarity=0.125 Sum_probs=49.0
Q ss_pred CCCcEEEEecchhHHHHHHHHHHHc-----CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEec-cc----cc-ccccc
Q 037567 227 GAGSIIVYCMTIKDVEEISKALKQL-----GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM-AF----GM-GIDKP 295 (374)
Q Consensus 227 ~~~~~lVf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~-~~----~~-G~d~~ 295 (374)
.+.+++|.+|++.-+..+++.+++. +..+..++|+.+..+.... + .+..+|+|+|+ .+ .. .+++.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~ 145 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCcc
Confidence 3457999999999999998888764 5667788888765543322 2 24568999997 22 22 23455
Q ss_pred CccEEEE
Q 037567 296 DVRHVIH 302 (374)
Q Consensus 296 ~~~~vi~ 302 (374)
+++++|.
T Consensus 146 ~~~~lVi 152 (206)
T 1vec_A 146 HVQMIVL 152 (206)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 6777664
No 301
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=82.42 E-value=2.9 Score=33.54 Aligned_cols=70 Identities=11% Similarity=0.169 Sum_probs=50.4
Q ss_pred CCCcEEEEecchhHHHHHHHHHHHc-----CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEecc-cc-----cccccc
Q 037567 227 GAGSIIVYCMTIKDVEEISKALKQL-----GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMA-FG-----MGIDKP 295 (374)
Q Consensus 227 ~~~~~lVf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~-~~-----~G~d~~ 295 (374)
.+.+++|.+|++.-+.++++.+++. +..+..++|+.+..+....+ ...+|+|+|+- +. ..+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 4568999999999999999988874 56788889988766554432 24689999982 21 234555
Q ss_pred CccEEE
Q 037567 296 DVRHVI 301 (374)
Q Consensus 296 ~~~~vi 301 (374)
+++++|
T Consensus 166 ~~~~lV 171 (230)
T 2oxc_A 166 SIRLFI 171 (230)
T ss_dssp GCCEEE
T ss_pred cCCEEE
Confidence 666666
No 302
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=82.31 E-value=0.62 Score=37.38 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=16.1
Q ss_pred HHcCCCEEEEccCCCCchhhh
Q 037567 25 IIEKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 25 ~~~~~~~l~~a~tGsGKT~~~ 45 (374)
+..|+-+.+.||+|+|||...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 345778899999999999653
No 303
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=82.07 E-value=0.62 Score=36.20 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=13.7
Q ss_pred CCEEEEccCCCCchhhh
Q 037567 29 RDCLVVMATGSGKSLCY 45 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~ 45 (374)
+-+.+.||+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 44688999999999653
No 304
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=81.83 E-value=0.65 Score=40.25 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=21.7
Q ss_pred chhHHHHHHH-------HHcCCCE--EEEccCCCCchhhhh
Q 037567 15 RPYQKDVIQR-------IIEKRDC--LVVMATGSGKSLCYQ 46 (374)
Q Consensus 15 ~~~Q~~~~~~-------~~~~~~~--l~~a~tGsGKT~~~~ 46 (374)
..-|.+.+.. +++|.++ +..|.||||||.++.
T Consensus 64 ~~~Q~~vf~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 64 SHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp TCCHHHHHHHHHHHHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 3456655544 3456654 668999999999875
No 305
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=81.69 E-value=0.47 Score=36.36 Aligned_cols=19 Identities=26% Similarity=0.308 Sum_probs=15.0
Q ss_pred CCCEEEEccCCCCchhhhh
Q 037567 28 KRDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~ 46 (374)
|.-+.+.||+|||||..+-
T Consensus 9 gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SEEEEEECCTTSCHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 4557899999999997543
No 306
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=81.64 E-value=0.57 Score=40.07 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=14.9
Q ss_pred CCEEEEccCCCCchhhh
Q 037567 29 RDCLVVMATGSGKSLCY 45 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~ 45 (374)
..+++.||+|+|||..+
T Consensus 39 ~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCEEECCTTCCCHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 67899999999999754
No 307
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=81.48 E-value=0.4 Score=37.17 Aligned_cols=19 Identities=16% Similarity=0.246 Sum_probs=15.1
Q ss_pred CCCEEEEccCCCCchhhhh
Q 037567 28 KRDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~ 46 (374)
+..+++.|++|||||...-
T Consensus 4 g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp EEEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4457899999999997543
No 308
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=81.47 E-value=0.68 Score=39.30 Aligned_cols=17 Identities=29% Similarity=0.282 Sum_probs=14.4
Q ss_pred CCEEEEccCCCCchhhh
Q 037567 29 RDCLVVMATGSGKSLCY 45 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~ 45 (374)
..+++.||+|+|||..+
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 36899999999999764
No 309
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=81.43 E-value=0.62 Score=36.67 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCCchhhh
Q 037567 27 EKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~ 45 (374)
.++-+++.||+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 4667889999999999653
No 310
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=81.40 E-value=0.67 Score=40.12 Aligned_cols=32 Identities=22% Similarity=0.380 Sum_probs=22.2
Q ss_pred chhHHHHHHHH-------HcCCCE--EEEccCCCCchhhhh
Q 037567 15 RPYQKDVIQRI-------IEKRDC--LVVMATGSGKSLCYQ 46 (374)
Q Consensus 15 ~~~Q~~~~~~~-------~~~~~~--l~~a~tGsGKT~~~~ 46 (374)
..-|.+.+..+ ++|.++ +..|.||||||.++.
T Consensus 63 ~~~Q~~Vy~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 63 QDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp TCCHHHHHHHHHHHHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 34566666543 456654 668999999999875
No 311
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=81.39 E-value=13 Score=30.03 Aligned_cols=71 Identities=10% Similarity=0.046 Sum_probs=48.9
Q ss_pred CCcEEEEecchhHHHHHHHHHHHc----CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEec-ccc-----ccccccCc
Q 037567 228 AGSIIVYCMTIKDVEEISKALKQL----GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM-AFG-----MGIDKPDV 297 (374)
Q Consensus 228 ~~~~lVf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~-~~~-----~G~d~~~~ 297 (374)
+.++||.+|++.-+..+++.+++. +..+..++|+.+.......+ ....+|+|+|+ .+. ..+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 468999999999999998888764 45677788887655433322 24568999997 222 23456667
Q ss_pred cEEEE
Q 037567 298 RHVIH 302 (374)
Q Consensus 298 ~~vi~ 302 (374)
+++|.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 77664
No 312
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=81.36 E-value=0.57 Score=39.79 Aligned_cols=16 Identities=25% Similarity=0.146 Sum_probs=13.2
Q ss_pred CEEEEccCCCCchhhh
Q 037567 30 DCLVVMATGSGKSLCY 45 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~ 45 (374)
-++|.||||+|||..+
T Consensus 5 ~i~i~GptgsGKt~la 20 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCcCCHHHHH
Confidence 4678999999999654
No 313
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=81.29 E-value=0.61 Score=36.98 Aligned_cols=22 Identities=18% Similarity=0.098 Sum_probs=16.3
Q ss_pred HHHcCCCEEEEccCCCCchhhh
Q 037567 24 RIIEKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 24 ~~~~~~~~l~~a~tGsGKT~~~ 45 (374)
.+..|.-+.+.||.|+|||...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 5566788889999999999653
No 314
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=81.06 E-value=0.63 Score=37.39 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=16.1
Q ss_pred HHHcCCCEEEEccCCCCchhhh
Q 037567 24 RIIEKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 24 ~~~~~~~~l~~a~tGsGKT~~~ 45 (374)
.+-.|.-+.+.||.|+|||...
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHH
Confidence 3456777899999999999653
No 315
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=80.96 E-value=0.6 Score=39.56 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=13.2
Q ss_pred CEEEEccCCCCchhhh
Q 037567 30 DCLVVMATGSGKSLCY 45 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~ 45 (374)
-+++.||||||||..+
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3678999999999654
No 316
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=80.92 E-value=0.69 Score=38.62 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=14.4
Q ss_pred CCEEEEccCCCCchhhh
Q 037567 29 RDCLVVMATGSGKSLCY 45 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~ 45 (374)
+.+++.||+|+|||..+
T Consensus 45 ~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp SEEEEESSTTSCHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 45899999999999754
No 317
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=80.78 E-value=0.75 Score=40.23 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=26.3
Q ss_pred cCCCC---CchhHHHHHHHH-------HcCCCE--EEEccCCCCchhhhhcc
Q 037567 9 FGYSV---FRPYQKDVIQRI-------IEKRDC--LVVMATGSGKSLCYQLP 48 (374)
Q Consensus 9 ~~~~~---~~~~Q~~~~~~~-------~~~~~~--l~~a~tGsGKT~~~~l~ 48 (374)
|.|+. +..-|.+.+..+ ++|.++ +..|.||||||.++.-.
T Consensus 85 F~FD~Vf~~~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~ 136 (376)
T 2rep_A 85 FSFDRVFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGG 136 (376)
T ss_dssp EECSEEECTTCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHHTBC
T ss_pred eeecEEcCCcccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEeecC
Confidence 55553 344677666543 356654 66889999999987543
No 318
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=80.64 E-value=7.4 Score=31.28 Aligned_cols=73 Identities=12% Similarity=0.142 Sum_probs=43.7
Q ss_pred CCCcEEEEecchhHHHHHHHHHHHc----CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEec-----cccc-cccccC
Q 037567 227 GAGSIIVYCMTIKDVEEISKALKQL----GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM-----AFGM-GIDKPD 296 (374)
Q Consensus 227 ~~~~~lVf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~-----~~~~-G~d~~~ 296 (374)
.+.+++|.+|++..+..+++.+++. +..+..++|+.+... ....+..+..+|+|+|+ .+.. .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 4568999999999999999988875 455666666654322 23344556688999995 2222 345566
Q ss_pred ccEEEE
Q 037567 297 VRHVIH 302 (374)
Q Consensus 297 ~~~vi~ 302 (374)
++.+|.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777664
No 319
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=80.54 E-value=3.2 Score=37.12 Aligned_cols=31 Identities=29% Similarity=0.207 Sum_probs=19.7
Q ss_pred CEEEEccCCCCchhhhhccc---ccc-CCcEEEEc
Q 037567 30 DCLVVMATGSGKSLCYQLPP---LVT-GKTALVVS 60 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~l~~---~~~-~~~~lil~ 60 (374)
.+++.+++|+|||.+..-.+ ... +.+++++.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd 136 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVS 136 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 35678999999996543222 123 66776654
No 320
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=80.51 E-value=0.67 Score=36.49 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCCCchhhh
Q 037567 27 EKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~ 45 (374)
.+..+++.||+|||||..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3566789999999999654
No 321
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=80.38 E-value=6.1 Score=35.17 Aligned_cols=31 Identities=26% Similarity=0.279 Sum_probs=19.2
Q ss_pred CEEEEccCCCCchhhhhccc--c-ccCCcEEEEc
Q 037567 30 DCLVVMATGSGKSLCYQLPP--L-VTGKTALVVS 60 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~l~~--~-~~~~~~lil~ 60 (374)
.+.+.++.|+|||.+....+ + ..+.+++++.
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd 133 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee
Confidence 35678999999996543221 1 2456666654
No 322
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=80.20 E-value=0.67 Score=35.95 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=15.1
Q ss_pred CCCEEEEccCCCCchhhhh
Q 037567 28 KRDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~ 46 (374)
+..+++.|++|||||...-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4557899999999997543
No 323
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=79.97 E-value=0.58 Score=35.84 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=14.6
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
+..+++.|++|||||..+
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 445789999999999654
No 324
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=79.94 E-value=0.56 Score=40.83 Aligned_cols=18 Identities=44% Similarity=0.434 Sum_probs=14.6
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
+..+++.||||||||...
T Consensus 123 ~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 446789999999999653
No 325
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=79.93 E-value=5.8 Score=32.59 Aligned_cols=72 Identities=17% Similarity=0.173 Sum_probs=50.1
Q ss_pred CCCcEEEEecchhHHHHHHHHHHHc----CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEec-----ccc--cccccc
Q 037567 227 GAGSIIVYCMTIKDVEEISKALKQL----GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM-----AFG--MGIDKP 295 (374)
Q Consensus 227 ~~~~~lVf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~-----~~~--~G~d~~ 295 (374)
.+.+++|.+|++.-+.+.++.+++. +..+..+.|+.+....... +..+ .+|+|+|+ .+. .++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 4678999999999999999988874 4566778887765544333 2233 78999995 111 245667
Q ss_pred CccEEEE
Q 037567 296 DVRHVIH 302 (374)
Q Consensus 296 ~~~~vi~ 302 (374)
+++.+|.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7777763
No 326
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=79.86 E-value=0.73 Score=39.74 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=14.8
Q ss_pred CCEEEEccCCCCchhhh
Q 037567 29 RDCLVVMATGSGKSLCY 45 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~ 45 (374)
..+++.||+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 67899999999999654
No 327
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=79.69 E-value=0.58 Score=40.50 Aligned_cols=18 Identities=33% Similarity=0.348 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
..++++.||+|+|||..+
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 467999999999999654
No 328
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=79.60 E-value=0.59 Score=41.05 Aligned_cols=19 Identities=42% Similarity=0.329 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCCCchhhh
Q 037567 27 EKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~ 45 (374)
.+..+++.||||||||...
T Consensus 135 ~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSEEEEEECSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4566889999999999653
No 329
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=79.58 E-value=0.72 Score=38.82 Aligned_cols=16 Identities=31% Similarity=0.262 Sum_probs=13.4
Q ss_pred CEEEEccCCCCchhhh
Q 037567 30 DCLVVMATGSGKSLCY 45 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~ 45 (374)
-+++.||+|||||..+
T Consensus 35 livl~G~sGsGKSTla 50 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEECCTTSCTHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4688999999999654
No 330
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=79.51 E-value=0.9 Score=34.98 Aligned_cols=58 Identities=7% Similarity=-0.016 Sum_probs=40.7
Q ss_pred chhHHHHHHHHHcC--CCEEEEccCCCCchhhh---hccc-cccCCcEEEEcchHHHHHHHHHH
Q 037567 15 RPYQKDVIQRIIEK--RDCLVVMATGSGKSLCY---QLPP-LVTGKTALVVSPLISLMQDQVMS 72 (374)
Q Consensus 15 ~~~Q~~~~~~~~~~--~~~l~~a~tGsGKT~~~---~l~~-~~~~~~~lil~P~~~l~~q~~~~ 72 (374)
.+-|..++..++.. .-.++.++-|++|+... ++.+ -..+.++.+++|+..-.....+.
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~~l~~~ 99 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNMKQD 99 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHHHHSCT
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHHHHHhh
Confidence 35688899888763 34577889999999763 2222 23688999999998766654443
No 331
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=79.50 E-value=0.77 Score=35.82 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=17.0
Q ss_pred HHcCCCEEEEccCCCCchhhhh
Q 037567 25 IIEKRDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 25 ~~~~~~~l~~a~tGsGKT~~~~ 46 (374)
+..+..+++.|++|||||...-
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHH
Confidence 3345678899999999997543
No 332
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=79.39 E-value=0.77 Score=35.90 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=16.5
Q ss_pred HHcCCCEEEEccCCCCchhhh
Q 037567 25 IIEKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 25 ~~~~~~~l~~a~tGsGKT~~~ 45 (374)
+..+.-+++.|++|||||...
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 334567889999999999754
No 333
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=79.34 E-value=0.75 Score=36.28 Aligned_cols=15 Identities=47% Similarity=0.820 Sum_probs=12.9
Q ss_pred EEEEccCCCCchhhh
Q 037567 31 CLVVMATGSGKSLCY 45 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~ 45 (374)
.++.|++|||||..+
T Consensus 8 ~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 8 CLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEeCCCCCHHHHH
Confidence 578999999999754
No 334
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=79.13 E-value=3.3 Score=37.10 Aligned_cols=55 Identities=15% Similarity=0.118 Sum_probs=43.5
Q ss_pred CCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhhhhhhhcCCeeEEEEcC
Q 037567 53 GKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTP 108 (374)
Q Consensus 53 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~ 108 (374)
..+++|++|++.-++.+.+.++..+..+..+++. ...........+..+|+|+|.
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~-~r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK-TFESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT-THHHHTTHHHHSCCSEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc-cHHHHHHhhcCCCCeEEEECc
Confidence 5689999999999999999999998888888775 223333444567889999994
No 335
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=78.96 E-value=0.77 Score=35.72 Aligned_cols=17 Identities=18% Similarity=0.098 Sum_probs=14.0
Q ss_pred CCEEEEccCCCCchhhh
Q 037567 29 RDCLVVMATGSGKSLCY 45 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~ 45 (374)
.-+++.|++|||||...
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788999999999754
No 336
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=78.89 E-value=0.97 Score=41.07 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
..++++.||+|+|||...
T Consensus 201 ~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 457899999999999654
No 337
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=78.73 E-value=0.87 Score=36.62 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=18.7
Q ss_pred CEEEEccCCCCchhhhhccc---cccCCcEE
Q 037567 30 DCLVVMATGSGKSLCYQLPP---LVTGKTAL 57 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~l~~---~~~~~~~l 57 (374)
++++.+++|+|||.+++-.+ ...+.+++
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~ 38 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVM 38 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEE
Confidence 57889999999997754322 23455554
No 338
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=78.68 E-value=0.89 Score=34.80 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=14.3
Q ss_pred CEEEEccCCCCchhhhh
Q 037567 30 DCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~ 46 (374)
.+++.+++|||||...-
T Consensus 6 ~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 6 NIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 58899999999997543
No 339
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=78.66 E-value=10 Score=30.02 Aligned_cols=71 Identities=15% Similarity=0.158 Sum_probs=43.8
Q ss_pred CCCcEEEEecchhHHHHHHHHHHHc----CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEecc-c-----cccccccC
Q 037567 227 GAGSIIVYCMTIKDVEEISKALKQL----GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMA-F-----GMGIDKPD 296 (374)
Q Consensus 227 ~~~~~lVf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~-~-----~~G~d~~~ 296 (374)
.+.+++|.+|++.-+..+++.+++. +..+..++|+.+..+.... +. +.+|+|+|+- + ...+++..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 4568999999999999999888764 5677788887655443322 22 2689999972 2 22445566
Q ss_pred ccEEEE
Q 037567 297 VRHVIH 302 (374)
Q Consensus 297 ~~~vi~ 302 (374)
++.+|.
T Consensus 156 ~~~iVi 161 (224)
T 1qde_A 156 IKMFIL 161 (224)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777663
No 340
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=78.61 E-value=1.2 Score=38.72 Aligned_cols=35 Identities=23% Similarity=0.168 Sum_probs=23.4
Q ss_pred CchhHHHHHHH--------HHc-CCC--EEEEccCCCCchhhhhcc
Q 037567 14 FRPYQKDVIQR--------IIE-KRD--CLVVMATGSGKSLCYQLP 48 (374)
Q Consensus 14 ~~~~Q~~~~~~--------~~~-~~~--~l~~a~tGsGKT~~~~l~ 48 (374)
+..-|.+.+.. ++. |.+ ++..|.||||||.++.-.
T Consensus 60 ~~~~Q~~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM~G~ 105 (360)
T 1ry6_A 60 DTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGS 105 (360)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHHHBS
T ss_pred CCCCHHHHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEEecC
Confidence 33457666653 233 665 477999999999987543
No 341
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=78.48 E-value=11 Score=33.80 Aligned_cols=72 Identities=21% Similarity=0.285 Sum_probs=52.1
Q ss_pred cCCCcEEEEecchhHHHHHHHHHHHc-CC---ceeeeecCCChHHHHHHHHhhhcCCeeEEEEec-cccc-----ccccc
Q 037567 226 AGAGSIIVYCMTIKDVEEISKALKQL-GV---KAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM-AFGM-----GIDKP 295 (374)
Q Consensus 226 ~~~~~~lVf~~~~~~~~~l~~~l~~~-~~---~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~-~~~~-----G~d~~ 295 (374)
..+.++||.+|+..-+...++.+.+. +. .+..++|+....++..... ..+|+|+|. .+.. .++..
T Consensus 50 ~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~ 124 (494)
T 1wp9_A 50 KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLE 124 (494)
T ss_dssp HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTT
T ss_pred cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchh
Confidence 36789999999999999999998875 55 7889999988776654432 357899886 2221 34455
Q ss_pred CccEEEE
Q 037567 296 DVRHVIH 302 (374)
Q Consensus 296 ~~~~vi~ 302 (374)
+++.||.
T Consensus 125 ~~~~vIi 131 (494)
T 1wp9_A 125 DVSLIVF 131 (494)
T ss_dssp SCSEEEE
T ss_pred hceEEEE
Confidence 6666663
No 342
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=78.42 E-value=1.1 Score=40.26 Aligned_cols=18 Identities=28% Similarity=0.409 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
.+++++.||+|+|||..+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 367999999999999764
No 343
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=78.36 E-value=1.5 Score=37.80 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=13.7
Q ss_pred EEEEccCCCCchhhhh
Q 037567 31 CLVVMATGSGKSLCYQ 46 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~~ 46 (374)
+++.||+|+|||..+.
T Consensus 49 ~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIV 64 (340)
T ss_dssp EEEECSSSSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 8999999999996543
No 344
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=78.35 E-value=0.83 Score=35.48 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=13.6
Q ss_pred CEEEEccCCCCchhhhh
Q 037567 30 DCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~ 46 (374)
-+++.||+|+|||...-
T Consensus 4 ii~l~G~~GaGKSTl~~ 20 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCK 20 (189)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 35789999999997543
No 345
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=78.31 E-value=0.82 Score=35.99 Aligned_cols=17 Identities=35% Similarity=0.354 Sum_probs=14.4
Q ss_pred CCEEEEccCCCCchhhh
Q 037567 29 RDCLVVMATGSGKSLCY 45 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~ 45 (374)
.-+++.|++|||||..+
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999754
No 346
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=78.05 E-value=0.99 Score=38.15 Aligned_cols=33 Identities=15% Similarity=0.164 Sum_probs=20.6
Q ss_pred CCCEEEEccCCCCchhhhhc-c-cc--ccCCcEEEEc
Q 037567 28 KRDCLVVMATGSGKSLCYQL-P-PL--VTGKTALVVS 60 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l-~-~~--~~~~~~lil~ 60 (374)
++.+++.+++|+|||.+... + .+ .++.+++++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34567899999999965432 2 22 2355666653
No 347
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=77.64 E-value=0.86 Score=38.92 Aligned_cols=16 Identities=19% Similarity=0.179 Sum_probs=13.5
Q ss_pred CEEEEccCCCCchhhh
Q 037567 30 DCLVVMATGSGKSLCY 45 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~ 45 (374)
.+++.||||||||...
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999654
No 348
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=77.59 E-value=5 Score=33.88 Aligned_cols=73 Identities=18% Similarity=0.117 Sum_probs=52.8
Q ss_pred cCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhhh---hhhhcCCeeEEEEcCcccccCchhhHHHHHhcCcc
Q 037567 52 TGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQ---TKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVC 128 (374)
Q Consensus 52 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~ 128 (374)
...++||+++++.-++.+.+.+...+..+..+++........ .....+..+|+|+|.- +. ..+...+++
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~v-a~-------~Gidi~~v~ 98 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDV-AA-------RGLDIPQVD 98 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECST-TT-------CSTTCCCCS
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEech-hh-------cCcccccee
Confidence 478999999999999999999999999998888876554432 2334577899999942 11 223345666
Q ss_pred EEEE
Q 037567 129 LFAV 132 (374)
Q Consensus 129 ~vvi 132 (374)
+||.
T Consensus 99 ~VI~ 102 (300)
T 3i32_A 99 LVVH 102 (300)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6664
No 349
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=77.58 E-value=3.3 Score=28.68 Aligned_cols=42 Identities=19% Similarity=0.202 Sum_probs=34.8
Q ss_pred HHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCC
Q 037567 221 ILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQM 262 (374)
Q Consensus 221 ~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 262 (374)
.+..+..+.++++||.+-..+...+..|++.|+++..+.|++
T Consensus 48 ~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~ 89 (108)
T 3gk5_A 48 KWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGI 89 (108)
T ss_dssp HGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHH
T ss_pred HHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcH
Confidence 344456678999999998889999999999999888888874
No 350
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=77.58 E-value=0.88 Score=35.30 Aligned_cols=16 Identities=31% Similarity=0.262 Sum_probs=13.3
Q ss_pred CEEEEccCCCCchhhh
Q 037567 30 DCLVVMATGSGKSLCY 45 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~ 45 (374)
.+++.|++|||||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3688999999999654
No 351
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=77.53 E-value=1.1 Score=34.60 Aligned_cols=18 Identities=33% Similarity=0.342 Sum_probs=14.6
Q ss_pred CCEEEEccCCCCchhhhh
Q 037567 29 RDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~ 46 (374)
..+++.|++|||||...-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 357899999999997643
No 352
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=77.47 E-value=0.54 Score=37.02 Aligned_cols=18 Identities=22% Similarity=0.243 Sum_probs=14.4
Q ss_pred CCEEEEccCCCCchhhhh
Q 037567 29 RDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~ 46 (374)
..+++.|++|||||...-
T Consensus 21 ~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357889999999997643
No 353
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=77.33 E-value=1.2 Score=39.26 Aligned_cols=38 Identities=16% Similarity=0.397 Sum_probs=26.6
Q ss_pred cCCCEEEEccCCCCchhhhhcc---ccccCCcEEEEcchHH
Q 037567 27 EKRDCLVVMATGSGKSLCYQLP---PLVTGKTALVVSPLIS 64 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~~l~---~~~~~~~~lil~P~~~ 64 (374)
.+.++++.|+||+|||...-.. ....+.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcC
Confidence 4678999999999999653222 2235777888877654
No 354
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=77.09 E-value=0.82 Score=35.99 Aligned_cols=19 Identities=32% Similarity=0.163 Sum_probs=15.1
Q ss_pred cCCCEEEEccCCCCchhhh
Q 037567 27 EKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~ 45 (374)
.+.-+.+.||+|||||..+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3556788999999999654
No 355
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=76.96 E-value=0.93 Score=34.39 Aligned_cols=19 Identities=32% Similarity=0.275 Sum_probs=15.4
Q ss_pred CCEEEEccCCCCchhhhhc
Q 037567 29 RDCLVVMATGSGKSLCYQL 47 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~l 47 (374)
+++++.|++|||||...-.
T Consensus 8 ~~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4678999999999976543
No 356
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=76.95 E-value=0.95 Score=36.02 Aligned_cols=16 Identities=19% Similarity=0.277 Sum_probs=13.4
Q ss_pred EEEEccCCCCchhhhh
Q 037567 31 CLVVMATGSGKSLCYQ 46 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~~ 46 (374)
+++.|++|||||...-
T Consensus 3 I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999997643
No 357
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=76.93 E-value=0.96 Score=35.16 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=14.3
Q ss_pred CCEEEEccCCCCchhhhh
Q 037567 29 RDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~ 46 (374)
..+++.|++|||||..+-
T Consensus 4 ~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 347899999999997643
No 358
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=76.68 E-value=0.9 Score=36.69 Aligned_cols=19 Identities=16% Similarity=0.128 Sum_probs=11.1
Q ss_pred cCCCEEEEccCCCCchhhh
Q 037567 27 EKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~ 45 (374)
.|.-+.+.||+|+|||...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3556789999999999653
No 359
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=76.64 E-value=1.3 Score=36.33 Aligned_cols=19 Identities=32% Similarity=0.350 Sum_probs=16.7
Q ss_pred CCCEEEEccCCCCchhhhh
Q 037567 28 KRDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~ 46 (374)
+..+++.|++|+|||...-
T Consensus 48 g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp TCCEEEECSTTSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 8899999999999997643
No 360
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=76.57 E-value=6.5 Score=33.77 Aligned_cols=75 Identities=11% Similarity=0.005 Sum_probs=54.1
Q ss_pred cCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhhh---hhhhcCCeeEEEEcCcccccCchhhHHHHHhcCcc
Q 037567 52 TGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQ---TKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVC 128 (374)
Q Consensus 52 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~ 128 (374)
...++||+++++.-+..+.+.+...+..+..+++........ .....+..+|+|+|.- ....+...+++
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~--------~~~Gid~~~~~ 308 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDV--------MSRGIDVNDLN 308 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTT--------HHHHCCCSCCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECCh--------hhcCCCcccCC
Confidence 466899999999999999999999999888888766544322 2333567889999931 12445556777
Q ss_pred EEEEec
Q 037567 129 LFAVDE 134 (374)
Q Consensus 129 ~vviDE 134 (374)
+||.-+
T Consensus 309 ~Vi~~~ 314 (367)
T 1hv8_A 309 CVINYH 314 (367)
T ss_dssp EEEESS
T ss_pred EEEEec
Confidence 777533
No 361
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=76.47 E-value=0.98 Score=38.88 Aligned_cols=16 Identities=31% Similarity=0.216 Sum_probs=13.4
Q ss_pred CEEEEccCCCCchhhh
Q 037567 30 DCLVVMATGSGKSLCY 45 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~ 45 (374)
-++|.||||||||..+
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 4689999999999654
No 362
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=76.44 E-value=0.76 Score=36.15 Aligned_cols=18 Identities=17% Similarity=-0.058 Sum_probs=14.9
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
+..+++.|++|||||...
T Consensus 4 ~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 456789999999999654
No 363
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=76.37 E-value=1.6 Score=36.92 Aligned_cols=28 Identities=36% Similarity=0.445 Sum_probs=19.5
Q ss_pred HHHHHHHHHc----C--CCEEEEccCCCCchhhh
Q 037567 18 QKDVIQRIIE----K--RDCLVVMATGSGKSLCY 45 (374)
Q Consensus 18 Q~~~~~~~~~----~--~~~l~~a~tGsGKT~~~ 45 (374)
|..++..+.+ + .++++.||+|+|||..+
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp CHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHH
Confidence 4555555543 2 25899999999999654
No 364
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=76.35 E-value=0.91 Score=36.00 Aligned_cols=18 Identities=33% Similarity=0.277 Sum_probs=13.9
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
+.-+.|.||+|||||...
T Consensus 22 g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345678999999999643
No 365
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=76.22 E-value=1 Score=35.85 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=13.5
Q ss_pred EEEEccCCCCchhhhh
Q 037567 31 CLVVMATGSGKSLCYQ 46 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~~ 46 (374)
+++.|++|||||...-
T Consensus 3 I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999997643
No 366
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=76.22 E-value=2.1 Score=34.76 Aligned_cols=73 Identities=15% Similarity=0.180 Sum_probs=46.8
Q ss_pred CCCcEEEEecchhHHHHHHHHHHHc----CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEec-cc----cc---cccc
Q 037567 227 GAGSIIVYCMTIKDVEEISKALKQL----GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM-AF----GM---GIDK 294 (374)
Q Consensus 227 ~~~~~lVf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~-~~----~~---G~d~ 294 (374)
.+.+++|.+|++.-+..+++.+++. +..+..++|+.... ........+..+|+|+|+ .+ .. ++++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAA---KKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHH---TTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHH---HHhhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 4557999999999999999998875 45555555542111 111122345678999996 22 12 4677
Q ss_pred cCccEEEE
Q 037567 295 PDVRHVIH 302 (374)
Q Consensus 295 ~~~~~vi~ 302 (374)
.+++++|.
T Consensus 174 ~~~~~lVi 181 (245)
T 3dkp_A 174 ASVEWLVV 181 (245)
T ss_dssp TTCCEEEE
T ss_pred ccCcEEEE
Confidence 77777763
No 367
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=76.10 E-value=1.2 Score=33.91 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=14.5
Q ss_pred CCEEEEccCCCCchhhhh
Q 037567 29 RDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~ 46 (374)
+.+++.|++|||||...-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 357899999999997543
No 368
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=75.87 E-value=4.1 Score=37.55 Aligned_cols=49 Identities=20% Similarity=0.106 Sum_probs=28.8
Q ss_pred CCCEEEEccCCCCchhhhhccc---cccCCcEEEEcchHHHHHHHHHHHHHcC
Q 037567 28 KRDCLVVMATGSGKSLCYQLPP---LVTGKTALVVSPLISLMQDQVMSLKQRG 77 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l~~---~~~~~~~lil~P~~~l~~q~~~~~~~~~ 77 (374)
|.-+++.+++|+|||......+ ...+.+++++++... ..|....+..++
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~-~~~l~~~~~~~g 332 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACANKERAILFAYEES-RAQLLRNAYSWG 332 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC-HHHHHHHHHTTS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcC
Confidence 5667899999999995432211 123556777766432 235555544443
No 369
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=75.83 E-value=1.1 Score=36.13 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCCchhhhh
Q 037567 28 KRDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~ 46 (374)
...+++.|++|||||...-
T Consensus 7 ~~~I~l~G~~GsGKsT~a~ 25 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSS 25 (227)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568899999999997643
No 370
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=75.75 E-value=1.1 Score=34.58 Aligned_cols=15 Identities=20% Similarity=0.357 Sum_probs=12.7
Q ss_pred CEEEEccCCCCchhh
Q 037567 30 DCLVVMATGSGKSLC 44 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~ 44 (374)
.+.+.||+|+|||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367899999999965
No 371
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=75.40 E-value=0.87 Score=36.02 Aligned_cols=18 Identities=28% Similarity=-0.023 Sum_probs=14.6
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
+.-+++.|++|||||...
T Consensus 4 ~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 445789999999999654
No 372
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=75.34 E-value=1.3 Score=35.42 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCCchhhhh
Q 037567 28 KRDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~ 46 (374)
...+++.|++|||||...-
T Consensus 5 ~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp SCCEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3568999999999997543
No 373
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=75.28 E-value=5.4 Score=38.02 Aligned_cols=55 Identities=11% Similarity=0.175 Sum_probs=43.8
Q ss_pred CCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhhhhhhhcCCeeEEEEcC
Q 037567 53 GKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTP 108 (374)
Q Consensus 53 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~ 108 (374)
..++||++|++.-++.+.+.++..+..+..+++. ...........+..+|+|+|.
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaTd 464 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK-SYDTEYPKCKNGDWDFVITTD 464 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS-SHHHHGGGGGTCCCSEEEECG
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH-HHHHHHHHHHCCCceEEEECc
Confidence 6789999999999999999999999888888873 233334444567789999994
No 374
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=75.14 E-value=1.1 Score=34.65 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=13.9
Q ss_pred CEEEEccCCCCchhhhh
Q 037567 30 DCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~ 46 (374)
.+++.|++|||||...-
T Consensus 8 ~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46889999999997543
No 375
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=75.10 E-value=1.9 Score=40.52 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=18.2
Q ss_pred HHHcCCCEEEEccCCCCchhhh
Q 037567 24 RIIEKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 24 ~~~~~~~~l~~a~tGsGKT~~~ 45 (374)
.+..+..+++.||+|+|||..+
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHH
Confidence 3446889999999999999654
No 376
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=75.04 E-value=9.3 Score=24.78 Aligned_cols=38 Identities=16% Similarity=0.316 Sum_probs=29.5
Q ss_pred cCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCC
Q 037567 226 AGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMG 263 (374)
Q Consensus 226 ~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 263 (374)
.++.+++++|.+-..+...+..|++.|+..+.+-|++.
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~lGG~~ 76 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENAGGLK 76 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEEEETT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEeccCHH
Confidence 56788999999988899999999999986333336643
No 377
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=74.99 E-value=1.2 Score=35.57 Aligned_cols=19 Identities=16% Similarity=0.211 Sum_probs=15.0
Q ss_pred CCCEEEEccCCCCchhhhh
Q 037567 28 KRDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~ 46 (374)
+..+++.|++|||||...-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3457899999999997543
No 378
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=74.64 E-value=1.2 Score=35.31 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=13.0
Q ss_pred EEEEccCCCCchhhhh
Q 037567 31 CLVVMATGSGKSLCYQ 46 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~~ 46 (374)
+++.|||||||+..+.
T Consensus 3 Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 5789999999996543
No 379
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=74.62 E-value=6.6 Score=36.12 Aligned_cols=55 Identities=11% Similarity=0.252 Sum_probs=41.7
Q ss_pred CCcEEEEecchhHHHHHHHHHHHc----CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEec
Q 037567 228 AGSIIVYCMTIKDVEEISKALKQL----GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM 286 (374)
Q Consensus 228 ~~~~lVf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~ 286 (374)
+.++||.+|++.-+....+.+++. +..+..++|+.+...+...+. +..+|+|+|+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 110 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTP 110 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECH
Confidence 778999999999888888877764 888999999986554322221 2367999997
No 380
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=74.31 E-value=1.2 Score=39.31 Aligned_cols=16 Identities=31% Similarity=0.277 Sum_probs=13.0
Q ss_pred CEEEEccCCCCchhhh
Q 037567 30 DCLVVMATGSGKSLCY 45 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~ 45 (374)
-++|.||||+|||..+
T Consensus 4 ~i~i~GptgsGKttla 19 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEECSSSSHHHHH
T ss_pred EEEEECcchhhHHHHH
Confidence 3678999999999553
No 381
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=74.03 E-value=1.3 Score=35.00 Aligned_cols=16 Identities=25% Similarity=0.210 Sum_probs=13.1
Q ss_pred EEEEccCCCCchhhhh
Q 037567 31 CLVVMATGSGKSLCYQ 46 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~~ 46 (374)
+.+.|++|||||...-
T Consensus 5 i~l~G~~GsGKST~~~ 20 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIAN 20 (206)
T ss_dssp EEEECSTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 5789999999997543
No 382
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=74.00 E-value=6.2 Score=35.61 Aligned_cols=55 Identities=13% Similarity=0.198 Sum_probs=43.1
Q ss_pred CCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhhhhhhhcCCeeEEEEcC
Q 037567 53 GKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTP 108 (374)
Q Consensus 53 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~ 108 (374)
..++||++|++.-++.+.+.+...+..+..+++. ...........+..+|+|+|.
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~-~R~~~~~~f~~g~~~iLVaT~ 244 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK-SYDTEYPKCKNGDWDFVITTD 244 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT-CCCCCGGGSSSCCCSEEEESS
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH-HHHHHHhhccCCCceEEEECC
Confidence 5789999999999999999999999888887764 222333344457789999994
No 383
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=73.95 E-value=1.3 Score=32.93 Aligned_cols=15 Identities=40% Similarity=0.414 Sum_probs=12.7
Q ss_pred CEEEEccCCCCchhh
Q 037567 30 DCLVVMATGSGKSLC 44 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~ 44 (374)
-.++.||+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 458899999999964
No 384
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=73.90 E-value=1.1 Score=34.40 Aligned_cols=20 Identities=15% Similarity=0.024 Sum_probs=11.6
Q ss_pred CCCEEEEccCCCCchhhhhc
Q 037567 28 KRDCLVVMATGSGKSLCYQL 47 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l 47 (374)
+..+++.|++|||||..+-.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp CCEEEEECCC----CHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 44578999999999976543
No 385
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=73.82 E-value=1.3 Score=36.64 Aligned_cols=18 Identities=22% Similarity=0.156 Sum_probs=14.4
Q ss_pred CCEEEEccCCCCchhhhh
Q 037567 29 RDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~ 46 (374)
.-+++.|++|||||..+-
T Consensus 5 ~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHH
Confidence 347899999999997543
No 386
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=73.80 E-value=1.5 Score=42.52 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
..++++.||+|+|||..+
T Consensus 201 ~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 458999999999999664
No 387
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=73.42 E-value=1.4 Score=35.32 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=13.5
Q ss_pred CCEEEEccCCCCchhhh
Q 037567 29 RDCLVVMATGSGKSLCY 45 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~ 45 (374)
+-+++.||+||||+..+
T Consensus 30 kiI~llGpPGsGKgTqa 46 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQC 46 (217)
T ss_dssp EEEEEECCTTCCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 44678999999998654
No 388
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=73.40 E-value=1.3 Score=34.65 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=12.8
Q ss_pred EEEEccCCCCchhhh
Q 037567 31 CLVVMATGSGKSLCY 45 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~ 45 (374)
+++.|++|||||...
T Consensus 3 I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 3 IAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCccCHHHHH
Confidence 678999999999654
No 389
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=73.33 E-value=1.3 Score=35.42 Aligned_cols=18 Identities=17% Similarity=0.158 Sum_probs=14.4
Q ss_pred CCEEEEccCCCCchhhhh
Q 037567 29 RDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~ 46 (374)
..+.+.||+|||||...-
T Consensus 6 ~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457899999999997543
No 390
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=73.33 E-value=1.3 Score=34.70 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=13.5
Q ss_pred CEEEEccCCCCchhhh
Q 037567 30 DCLVVMATGSGKSLCY 45 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~ 45 (374)
.+++.|++|||||...
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4688999999999764
No 391
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=73.30 E-value=1.6 Score=34.06 Aligned_cols=18 Identities=22% Similarity=0.349 Sum_probs=14.3
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
|..+.+.+|+|+|||...
T Consensus 1 G~~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CCCEEEESCCSSCHHHHH
T ss_pred CCEEEEECCCCChHHHHH
Confidence 345789999999999643
No 392
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=73.19 E-value=1.4 Score=33.34 Aligned_cols=17 Identities=24% Similarity=0.085 Sum_probs=13.7
Q ss_pred CEEEEccCCCCchhhhh
Q 037567 30 DCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~ 46 (374)
.+++.|++|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 36889999999997543
No 393
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=73.04 E-value=1.4 Score=34.91 Aligned_cols=20 Identities=20% Similarity=0.031 Sum_probs=15.7
Q ss_pred HcCCCEEEEccCCCCchhhh
Q 037567 26 IEKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 26 ~~~~~~l~~a~tGsGKT~~~ 45 (374)
..+..+++.|++|||||...
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34566788999999999654
No 394
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=72.90 E-value=6.7 Score=35.26 Aligned_cols=55 Identities=15% Similarity=0.126 Sum_probs=43.3
Q ss_pred CCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhhhhhhhcCCeeEEEEcC
Q 037567 53 GKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTP 108 (374)
Q Consensus 53 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~ 108 (374)
..++||++|++.-++++.+.+...+..+..+++... .........+..+|+|+|.
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~-~~~~~~f~~g~~~vLVaT~ 242 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF-DTEYPKTKLTDWDFVVTTD 242 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH-HHHGGGGGSSCCSEEEECG
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH-HHHHHhhccCCceEEEECC
Confidence 568999999999999999999998888877766443 2333444567889999994
No 395
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=72.83 E-value=1.4 Score=34.75 Aligned_cols=19 Identities=21% Similarity=0.004 Sum_probs=15.3
Q ss_pred cCCCEEEEccCCCCchhhh
Q 037567 27 EKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~ 45 (374)
.+.-+++.|++|||||...
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 3456789999999999654
No 396
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=72.82 E-value=1.3 Score=35.03 Aligned_cols=20 Identities=15% Similarity=0.001 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCCCchhhhh
Q 037567 27 EKRDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~~ 46 (374)
.+.-+++.|++|||||...-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35567899999999997543
No 397
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=72.67 E-value=1.2 Score=36.39 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=14.6
Q ss_pred CCEEEEccCCCCchhhhh
Q 037567 29 RDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~ 46 (374)
..+++.||+|||||...-
T Consensus 30 ~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 457899999999997543
No 398
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=72.59 E-value=1.4 Score=41.40 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=14.4
Q ss_pred CEEEEccCCCCchhhh
Q 037567 30 DCLVVMATGSGKSLCY 45 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~ 45 (374)
++++.||||+|||..+
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 7999999999999754
No 399
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=72.53 E-value=1.4 Score=34.98 Aligned_cols=16 Identities=25% Similarity=0.192 Sum_probs=13.4
Q ss_pred EEEEccCCCCchhhhh
Q 037567 31 CLVVMATGSGKSLCYQ 46 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~~ 46 (374)
+++.|++|||||...-
T Consensus 3 I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6899999999997543
No 400
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=72.48 E-value=1.2 Score=35.17 Aligned_cols=18 Identities=22% Similarity=-0.007 Sum_probs=14.0
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
+.-+.+.||+|||||...
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 344678999999999653
No 401
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=72.47 E-value=8 Score=39.29 Aligned_cols=61 Identities=13% Similarity=0.018 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEec
Q 037567 215 DELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM 286 (374)
Q Consensus 215 ~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~ 286 (374)
......++.....+++++|.+|++.-+...++.+++....+..++|+.+. ++..+|+|+|+
T Consensus 214 lva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~~-----------~~~~~IlV~Tp 274 (1108)
T 3l9o_A 214 VVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITI-----------NPDAGCLVMTT 274 (1108)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCBC-----------CCSCSEEEEEH
T ss_pred HHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCcccc-----------CCCCCEEEeCh
Confidence 33344455555678899999999999999999999876688899998762 24567888884
No 402
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=72.43 E-value=1.4 Score=34.56 Aligned_cols=16 Identities=25% Similarity=0.144 Sum_probs=13.4
Q ss_pred CEEEEccCCCCchhhh
Q 037567 30 DCLVVMATGSGKSLCY 45 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~ 45 (374)
.+.+.|++|||||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3678999999999754
No 403
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=72.42 E-value=9.6 Score=37.16 Aligned_cols=55 Identities=15% Similarity=0.183 Sum_probs=39.3
Q ss_pred CCcEEEEecchhHHHHHHHHHHHc----CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEec
Q 037567 228 AGSIIVYCMTIKDVEEISKALKQL----GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM 286 (374)
Q Consensus 228 ~~~~lVf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~ 286 (374)
++++||.+|++..+....+.+++. ++.+..++|+.+...+...+. +..+|+|+|+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp 354 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTP 354 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEch
Confidence 788999999999999888887775 889999999986554322221 2468999996
No 404
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=72.30 E-value=1.3 Score=34.02 Aligned_cols=18 Identities=17% Similarity=0.195 Sum_probs=14.4
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
+..+.+.|++|||||...
T Consensus 5 g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 455788999999999653
No 405
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=72.29 E-value=1.3 Score=34.29 Aligned_cols=18 Identities=22% Similarity=0.106 Sum_probs=14.4
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
+..+++.|++|||||...
T Consensus 13 ~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 345788999999999654
No 406
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=72.04 E-value=1.5 Score=34.00 Aligned_cols=15 Identities=27% Similarity=0.131 Sum_probs=12.7
Q ss_pred EEEEccCCCCchhhh
Q 037567 31 CLVVMATGSGKSLCY 45 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~ 45 (374)
+++.|++|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 578999999999654
No 407
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=71.90 E-value=1.6 Score=39.90 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=14.4
Q ss_pred CCEEEEccCCCCchhhh
Q 037567 29 RDCLVVMATGSGKSLCY 45 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~ 45 (374)
+.+++.||+|+|||..+
T Consensus 65 ~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35899999999999764
No 408
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=71.83 E-value=1.1 Score=36.70 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=13.4
Q ss_pred CEEEEccCCCCchhhh
Q 037567 30 DCLVVMATGSGKSLCY 45 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~ 45 (374)
.+++.|++|||||..+
T Consensus 34 ~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEEESCGGGTTHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4688999999999754
No 409
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=71.76 E-value=8.2 Score=35.52 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=46.2
Q ss_pred CCcEEEEecchhHHHHHHHHHHHc----CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEec-ccc----cc-c-cccC
Q 037567 228 AGSIIVYCMTIKDVEEISKALKQL----GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM-AFG----MG-I-DKPD 296 (374)
Q Consensus 228 ~~~~lVf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~-~~~----~G-~-d~~~ 296 (374)
+.++||.+|++.-+....+.+++. ++.+..++|+.+...+...+. ...+|+|+|+ .+. .+ + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 678999999999998888888774 888999999876544322221 1357999997 222 12 2 4556
Q ss_pred ccEEEE
Q 037567 297 VRHVIH 302 (374)
Q Consensus 297 ~~~vi~ 302 (374)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 677664
No 410
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=71.42 E-value=1.6 Score=34.47 Aligned_cols=18 Identities=22% Similarity=-0.040 Sum_probs=14.3
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
+.-+.+.|++|||||..+
T Consensus 21 ~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445679999999999654
No 411
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=71.26 E-value=1.6 Score=35.63 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=14.7
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
...+++.||+|||||...
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 356789999999999654
No 412
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=71.20 E-value=1.5 Score=40.59 Aligned_cols=18 Identities=17% Similarity=0.023 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
+..+++.||+|+|||..+
T Consensus 108 g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp SCEEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 567899999999999754
No 413
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=71.19 E-value=1.6 Score=35.02 Aligned_cols=16 Identities=31% Similarity=0.322 Sum_probs=13.3
Q ss_pred EEEEccCCCCchhhhh
Q 037567 31 CLVVMATGSGKSLCYQ 46 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~~ 46 (374)
+++.|++|||||...-
T Consensus 3 I~l~G~~GsGKsT~a~ 18 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGN 18 (223)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999997543
No 414
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=71.15 E-value=1.7 Score=34.70 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=14.6
Q ss_pred CCEEEEccCCCCchhhhh
Q 037567 29 RDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~ 46 (374)
..+++.|++|||||...-
T Consensus 6 ~~I~l~G~~GsGKsT~a~ 23 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCE 23 (217)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457899999999997543
No 415
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=71.09 E-value=1.7 Score=35.10 Aligned_cols=19 Identities=16% Similarity=0.198 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCCchhhhh
Q 037567 28 KRDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~ 46 (374)
+..+++.|++|||||...-
T Consensus 16 ~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999997543
No 416
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=70.89 E-value=1.7 Score=33.86 Aligned_cols=15 Identities=33% Similarity=0.178 Sum_probs=12.7
Q ss_pred EEEEccCCCCchhhh
Q 037567 31 CLVVMATGSGKSLCY 45 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~ 45 (374)
+++.|++|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 578999999999654
No 417
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=70.87 E-value=1.7 Score=33.44 Aligned_cols=16 Identities=44% Similarity=0.260 Sum_probs=13.1
Q ss_pred CEEEEccCCCCchhhh
Q 037567 30 DCLVVMATGSGKSLCY 45 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~ 45 (374)
-.++.||+|+|||...
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4588999999999653
No 418
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=70.71 E-value=2.5 Score=36.12 Aligned_cols=15 Identities=27% Similarity=0.321 Sum_probs=12.6
Q ss_pred EEEEccCCCCchhhh
Q 037567 31 CLVVMATGSGKSLCY 45 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~ 45 (374)
+++.|+.|||||...
T Consensus 7 ~~i~G~~GaGKTTll 21 (318)
T 1nij_A 7 TLLTGFLGAGKTTLL 21 (318)
T ss_dssp EEEEESSSSSCHHHH
T ss_pred EEEEecCCCCHHHHH
Confidence 578999999999653
No 419
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=70.65 E-value=6.7 Score=26.90 Aligned_cols=40 Identities=18% Similarity=0.296 Sum_probs=32.8
Q ss_pred HhhcCCCcEEEEecchhHHHHHHHHHHHcCCc-eeeeecCC
Q 037567 223 KSVAGAGSIIVYCMTIKDVEEISKALKQLGVK-AGTYHGQM 262 (374)
Q Consensus 223 ~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~ 262 (374)
..+..+.++++||.+-..+...+..|+..|+. +..+.|++
T Consensus 47 ~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 87 (106)
T 3hix_A 47 SSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 87 (106)
T ss_dssp HHSCTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHH
T ss_pred hcCCCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCH
Confidence 44556788999999988899999999999985 66777764
No 420
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=70.63 E-value=3.8 Score=42.04 Aligned_cols=48 Identities=19% Similarity=0.167 Sum_probs=34.9
Q ss_pred CCEEEEccCCCCchhhhh----ccccc-----------cCCcEEEEcchHHHHHHHHHHHHHc
Q 037567 29 RDCLVVMATGSGKSLCYQ----LPPLV-----------TGKTALVVSPLISLMQDQVMSLKQR 76 (374)
Q Consensus 29 ~~~l~~a~tGsGKT~~~~----l~~~~-----------~~~~~lil~P~~~l~~q~~~~~~~~ 76 (374)
...+|.|..|||||.+.. -.++. ...++|+|+=|++-+.++.+.+...
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 345999999999996532 11221 2347999999999999988887653
No 421
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=70.59 E-value=1.4 Score=37.31 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=21.3
Q ss_pred cCCCEEEEccCCCCchhhhh-ccccccCCcEEEEcc
Q 037567 27 EKRDCLVVMATGSGKSLCYQ-LPPLVTGKTALVVSP 61 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~~-l~~~~~~~~~lil~P 61 (374)
.|+.+.+.||+|+|||...- +.-+. ...++..+|
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~~~v~ 159 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVLSFAN 159 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH-TCEEECGGG
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc-CceEEEEec
Confidence 36778899999999995432 22222 555654443
No 422
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=70.56 E-value=1.8 Score=35.17 Aligned_cols=19 Identities=32% Similarity=0.315 Sum_probs=15.2
Q ss_pred cCCCEEEEccCCCCchhhh
Q 037567 27 EKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~ 45 (374)
.|.-+.+.||.|||||...
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTML 48 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 3566789999999999643
No 423
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=70.03 E-value=2.7 Score=28.92 Aligned_cols=38 Identities=16% Similarity=0.194 Sum_probs=31.9
Q ss_pred hcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCC
Q 037567 225 VAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQM 262 (374)
Q Consensus 225 ~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 262 (374)
+..+.+++++|.+-..+...+..|++.|++++.+.|++
T Consensus 53 l~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 53 FNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred hcCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 45678899999988888999999999999887776663
No 424
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=69.93 E-value=7.9 Score=34.08 Aligned_cols=57 Identities=12% Similarity=0.057 Sum_probs=44.8
Q ss_pred cCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhh---hhhhhcCCeeEEEEcC
Q 037567 52 TGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSV---QTKAETGYFQLLFMTP 108 (374)
Q Consensus 52 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~i~T~ 108 (374)
.+.++||+++++..++.+.+.+...+..+..+++....... ......+..+|+|+|.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~ 334 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA 334 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC
Confidence 36789999999999999999999999998888877654432 2233356788999994
No 425
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=69.83 E-value=1.7 Score=37.93 Aligned_cols=16 Identities=31% Similarity=0.366 Sum_probs=13.2
Q ss_pred CEEEEccCCCCchhhh
Q 037567 30 DCLVVMATGSGKSLCY 45 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~ 45 (374)
-.++.||+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4578999999999553
No 426
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=69.63 E-value=1.5 Score=35.07 Aligned_cols=18 Identities=28% Similarity=0.121 Sum_probs=14.7
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
|.-+.+.+|+|+|||...
T Consensus 25 G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SEEEEEEESTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456789999999999654
No 427
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=69.60 E-value=2.1 Score=37.01 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=13.9
Q ss_pred CEEEEccCCCCchhhh
Q 037567 30 DCLVVMATGSGKSLCY 45 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~ 45 (374)
++++.||+|+|||..+
T Consensus 38 ~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRC 53 (354)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4899999999999654
No 428
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=69.03 E-value=4.2 Score=27.58 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=32.3
Q ss_pred hcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCC
Q 037567 225 VAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQM 262 (374)
Q Consensus 225 ~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 262 (374)
+.++.++++||.+-..+...+..|++.|+++..+.|++
T Consensus 53 l~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 53 FNDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp SCTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 34678899999998899999999999999887777764
No 429
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=69.00 E-value=3.2 Score=39.94 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=19.9
Q ss_pred HHHHHHcCCCE--EEEccCCCCchhhhh
Q 037567 21 VIQRIIEKRDC--LVVMATGSGKSLCYQ 46 (374)
Q Consensus 21 ~~~~~~~~~~~--l~~a~tGsGKT~~~~ 46 (374)
.+..+++|.++ +..|.||||||.++.
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm~ 481 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTMS 481 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhccC
Confidence 45667788765 557899999998863
No 430
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=68.93 E-value=5.2 Score=28.69 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=34.7
Q ss_pred HHHHhhcCCCcEEEEecchhHHHHHHHHHHHcCCc-eeeeecCCC
Q 037567 220 EILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVK-AGTYHGQMG 263 (374)
Q Consensus 220 ~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 263 (374)
.....+..+.++++||.+-..+...+..|++.|+. +..+.|++.
T Consensus 74 ~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 74 QVSSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp HHTTTCCTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred HHHhhCCCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 33334456789999999988899999999999985 777888853
No 431
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=68.92 E-value=2.3 Score=33.85 Aligned_cols=19 Identities=16% Similarity=0.058 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCCchhhh
Q 037567 27 EKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~ 45 (374)
.|.-+.+.||.|+|||...
T Consensus 34 ~Ge~~~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLL 52 (214)
T ss_dssp TTCCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677889999999999653
No 432
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=68.61 E-value=1.9 Score=33.65 Aligned_cols=18 Identities=33% Similarity=0.196 Sum_probs=14.3
Q ss_pred CEEEEccCCCCchhhhhc
Q 037567 30 DCLVVMATGSGKSLCYQL 47 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~l 47 (374)
.+.+.+++|||||...-.
T Consensus 10 ~I~i~G~~GsGKST~~~~ 27 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAAL 27 (203)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999976543
No 433
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=68.61 E-value=2 Score=35.22 Aligned_cols=19 Identities=21% Similarity=0.148 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCCchhhhh
Q 037567 28 KRDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~ 46 (374)
+..+.+.||+|||||...-
T Consensus 27 g~~I~I~G~~GsGKSTl~k 45 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCK 45 (252)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4567899999999997543
No 434
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=68.55 E-value=2 Score=36.74 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=19.3
Q ss_pred CEEEEccCCCCchhhhh-ccc-c-ccCCcEEEE
Q 037567 30 DCLVVMATGSGKSLCYQ-LPP-L-VTGKTALVV 59 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~-l~~-~-~~~~~~lil 59 (374)
-+.+.+++|+|||.+.. ++. + ..+.+++++
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 35788999999996543 221 1 246666665
No 435
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=68.53 E-value=39 Score=26.46 Aligned_cols=95 Identities=12% Similarity=0.083 Sum_probs=56.3
Q ss_pred CCchhHHHHHHHHHc--CCCEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHHcCCc--eEEcCCCCC
Q 037567 13 VFRPYQKDVIQRIIE--KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGIN--AEFLGSAQT 88 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~--~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~--~~~~~~~~~ 88 (374)
...+.+.+.+..+.. ....++...+|+|-...++...+....++..+=.....+....+.+...+.. +.+..+...
T Consensus 47 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 126 (225)
T 3tr6_A 47 QTAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAK 126 (225)
T ss_dssp SCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHH
T ss_pred ccCHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHH
Confidence 455666777766543 4457889999999887665554444566777777666666666667666543 444433221
Q ss_pred chhhhhhhhc----CCeeEEEEcCc
Q 037567 89 DSSVQTKAET----GYFQLLFMTPE 109 (374)
Q Consensus 89 ~~~~~~~~~~----~~~~i~i~T~~ 109 (374)
.. ...... +.+|+++..+.
T Consensus 127 ~~--~~~~~~~~~~~~fD~v~~~~~ 149 (225)
T 3tr6_A 127 DT--LAELIHAGQAWQYDLIYIDAD 149 (225)
T ss_dssp HH--HHHHHTTTCTTCEEEEEECSC
T ss_pred HH--HHHhhhccCCCCccEEEECCC
Confidence 11 111111 56788886554
No 436
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=68.51 E-value=1.6 Score=36.36 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=16.6
Q ss_pred HHcCCCEEEEccCCCCchhhh
Q 037567 25 IIEKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 25 ~~~~~~~l~~a~tGsGKT~~~ 45 (374)
+..|.-+++.||+|+|||...
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~ 47 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLA 47 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHH
Confidence 345677899999999999553
No 437
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=68.50 E-value=2.3 Score=47.06 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=17.9
Q ss_pred HHcCCCEEEEccCCCCchhhhh
Q 037567 25 IIEKRDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 25 ~~~~~~~l~~a~tGsGKT~~~~ 46 (374)
+...+.++++||||||||.++-
T Consensus 920 ~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 920 QKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHCSEEEEECSTTSSHHHHHH
T ss_pred HHhcceEEEECCCCCCHHHHHH
Confidence 3447889999999999997753
No 438
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=68.44 E-value=1.9 Score=47.71 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=17.1
Q ss_pred HcCCCEEEEccCCCCchhhh
Q 037567 26 IEKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 26 ~~~~~~l~~a~tGsGKT~~~ 45 (374)
..+++++++||||+|||..+
T Consensus 1265 ~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1265 NSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHTCEEEEECSTTSSHHHHH
T ss_pred HCCCeEEEECCCCCCHHHHH
Confidence 34789999999999999654
No 439
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=68.24 E-value=2.1 Score=34.75 Aligned_cols=18 Identities=39% Similarity=0.278 Sum_probs=14.8
Q ss_pred cCCCEEEEccCCCCchhh
Q 037567 27 EKRDCLVVMATGSGKSLC 44 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~ 44 (374)
.|.-+.+.||.|||||..
T Consensus 30 ~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 356678999999999954
No 440
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=67.88 E-value=8.8 Score=31.43 Aligned_cols=83 Identities=12% Similarity=0.137 Sum_probs=58.4
Q ss_pred HcCCCEEEEcc-CCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhhhhh------hhc
Q 037567 26 IEKRDCLVVMA-TGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTK------AET 98 (374)
Q Consensus 26 ~~~~~~l~~a~-tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 98 (374)
+++|.++|.+. .|-|+..+-. ....+.+++++.-..+-+++..++++..|.+...+..+..+...... ...
T Consensus 5 L~gKvalVTGas~GIG~aiA~~--la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 82 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKK--FALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETY 82 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHH--HHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHH--HHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 57888888766 5567776533 33567788887777788888999999888877766666665544322 224
Q ss_pred CCeeEEEEcCcc
Q 037567 99 GYFQLLFMTPEK 110 (374)
Q Consensus 99 ~~~~i~i~T~~~ 110 (374)
+..|++|.+.+.
T Consensus 83 G~iDiLVNNAGi 94 (254)
T 4fn4_A 83 SRIDVLCNNAGI 94 (254)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCcc
Confidence 678999988764
No 441
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=67.71 E-value=7.1 Score=26.83 Aligned_cols=41 Identities=15% Similarity=0.187 Sum_probs=33.3
Q ss_pred HhhcCCCcEEEEecchhHHHHHHHHHHHcCCc-eeeeecCCC
Q 037567 223 KSVAGAGSIIVYCMTIKDVEEISKALKQLGVK-AGTYHGQMG 263 (374)
Q Consensus 223 ~~~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 263 (374)
..+..+.++++||.+-..+...+..|++.|+. +..+.|++.
T Consensus 53 ~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 53 RDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp HHSCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred HhcCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 34567789999999988899999999999985 767777753
No 442
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=67.63 E-value=3.3 Score=35.54 Aligned_cols=29 Identities=17% Similarity=0.138 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHcCCCEEEEccCCCCchhhh
Q 037567 16 PYQKDVIQRIIEKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 16 ~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~ 45 (374)
.-+.+.+.. +....++|.||.|+|||...
T Consensus 19 ~~el~~L~~-l~~~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 19 EKEIEKLKG-LRAPITLVLGLRRTGKSSII 47 (357)
T ss_dssp HHHHHHHHH-TCSSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHH-hcCCcEEEECCCCCCHHHHH
Confidence 334444545 55467789999999999653
No 443
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=67.54 E-value=24 Score=34.32 Aligned_cols=54 Identities=17% Similarity=0.124 Sum_probs=42.3
Q ss_pred CCCcEEEEecchhHHHHHHHHHHH----cCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEec
Q 037567 227 GAGSIIVYCMTIKDVEEISKALKQ----LGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM 286 (374)
Q Consensus 227 ~~~~~lVf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~ 286 (374)
.+.+++|.++|..-|...++.+.. .|+++..+.|+++...+.... ..+|+++|+
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTp 171 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTN 171 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECC
Confidence 567899999999988877766554 589999999999876554432 268999998
No 444
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=67.23 E-value=2.1 Score=37.50 Aligned_cols=15 Identities=33% Similarity=0.353 Sum_probs=12.7
Q ss_pred CEEEEccCCCCchhh
Q 037567 30 DCLVVMATGSGKSLC 44 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~ 44 (374)
-.++.|+||+|||..
T Consensus 27 l~vi~G~NGaGKT~i 41 (371)
T 3auy_A 27 IVAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 358999999999954
No 445
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=67.22 E-value=1.8 Score=36.39 Aligned_cols=35 Identities=23% Similarity=0.228 Sum_probs=22.2
Q ss_pred cCCCEEEEccCCCCchhhhhcccc---cc-CCcEEEEcc
Q 037567 27 EKRDCLVVMATGSGKSLCYQLPPL---VT-GKTALVVSP 61 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~~l~~~---~~-~~~~lil~P 61 (374)
.|.-+++.||+|+|||......+. .. +.+++++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 456778999999999965432211 12 446777643
No 446
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=67.19 E-value=8.8 Score=33.63 Aligned_cols=72 Identities=11% Similarity=0.037 Sum_probs=51.9
Q ss_pred CCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhhh---hhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccE
Q 037567 53 GKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQ---TKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCL 129 (374)
Q Consensus 53 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~ 129 (374)
..++||+++++.-+..+.+.+...+..+..+++.....+.. .....+..+|+|+|.- +. ..+...++++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-~~-------~Gidip~~~~ 337 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNV-CA-------RGIDVEQVSV 337 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG-GT-------SSCCCTTEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCc-cc-------cCCCccCCCE
Confidence 57899999999999999999999999888888876554432 2334567889999942 11 2233456677
Q ss_pred EEE
Q 037567 130 FAV 132 (374)
Q Consensus 130 vvi 132 (374)
||.
T Consensus 338 Vi~ 340 (412)
T 3fht_A 338 VIN 340 (412)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 447
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=67.17 E-value=17 Score=33.05 Aligned_cols=69 Identities=10% Similarity=0.096 Sum_probs=48.3
Q ss_pred CCCcEEEEecchhHHHHHHHHHHHcC----CceeeeecCCChHHHHHHHHhhhcCCeeEEEEec-ccccc--ccccCccE
Q 037567 227 GAGSIIVYCMTIKDVEEISKALKQLG----VKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM-AFGMG--IDKPDVRH 299 (374)
Q Consensus 227 ~~~~~lVf~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~-~~~~G--~d~~~~~~ 299 (374)
..++++|.+|+..-+....+.+++.+ ..+..++|+.+..++ ..+..+|+|+|. .+... ..+.+++.
T Consensus 156 ~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~I~i~T~~~l~~~~~~~~~~~~l 228 (510)
T 2oca_A 156 YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YKNDAPVVVGTWQTVVKQPKEWFSQFGM 228 (510)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GCTTCSEEEEEHHHHTTSCGGGGGGEEE
T ss_pred CCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cccCCcEEEEeHHHHhhchhhhhhcCCE
Confidence 34599999999999999999998752 356788888766543 346788999997 33222 33445666
Q ss_pred EEE
Q 037567 300 VIH 302 (374)
Q Consensus 300 vi~ 302 (374)
||.
T Consensus 229 iIi 231 (510)
T 2oca_A 229 MMN 231 (510)
T ss_dssp EEE
T ss_pred EEE
Confidence 663
No 448
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=66.97 E-value=5.4 Score=28.37 Aligned_cols=43 Identities=19% Similarity=0.132 Sum_probs=33.8
Q ss_pred HHHHhhcCCCcEEEEecchhH--HHHHHHHHHHcCCceeeeecCC
Q 037567 220 EILKSVAGAGSIIVYCMTIKD--VEEISKALKQLGVKAGTYHGQM 262 (374)
Q Consensus 220 ~~~~~~~~~~~~lVf~~~~~~--~~~l~~~l~~~~~~~~~~~~~~ 262 (374)
..+..+..+.++++||.+-.. +...+..|++.|+++..+.|++
T Consensus 63 ~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~ 107 (124)
T 3flh_A 63 TRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGAL 107 (124)
T ss_dssp HHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHH
T ss_pred HHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcH
Confidence 334445567889999998776 8899999999999977777764
No 449
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=66.92 E-value=2.2 Score=36.13 Aligned_cols=33 Identities=27% Similarity=0.291 Sum_probs=20.1
Q ss_pred CCCEEEEccCCCCchhhhhc-ccc--ccCCcEEEEc
Q 037567 28 KRDCLVVMATGSGKSLCYQL-PPL--VTGKTALVVS 60 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~l-~~~--~~~~~~lil~ 60 (374)
+.-+.+.||+|+|||..... +.+ ..+.++++..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34567899999999965332 211 1355565543
No 450
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=66.76 E-value=1.9 Score=36.49 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=19.6
Q ss_pred CEEEEccCCCCchhhhhc-ccc--ccCCcEEEEc
Q 037567 30 DCLVVMATGSGKSLCYQL-PPL--VTGKTALVVS 60 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~l-~~~--~~~~~~lil~ 60 (374)
-+.+.||+|+|||..... +.+ ..+.++++..
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 457899999999965432 211 1356666654
No 451
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=66.68 E-value=2.3 Score=33.19 Aligned_cols=39 Identities=18% Similarity=0.071 Sum_probs=23.0
Q ss_pred CEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHH
Q 037567 30 DCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVM 71 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~ 71 (374)
.+.+.|++|||||...-...-.-+ +.+.....++.+...
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg---~~vid~D~~~~~~~~ 52 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYG---AHVVNVDRIGHEVLE 52 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC---CEEEECcHHHHHHHH
Confidence 356899999999976433222112 334466666655443
No 452
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=66.54 E-value=4.5 Score=27.60 Aligned_cols=38 Identities=16% Similarity=0.194 Sum_probs=32.2
Q ss_pred hcCCCcEEEEecchhHHHHHHHHHHHcCCceeeeecCC
Q 037567 225 VAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQM 262 (374)
Q Consensus 225 ~~~~~~~lVf~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 262 (374)
+.++.++++||.+-..+...+..|+..|+++..+.|++
T Consensus 53 l~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 53 FNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 34677899999998889999999999999888777763
No 453
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=66.51 E-value=2.3 Score=33.38 Aligned_cols=16 Identities=19% Similarity=-0.087 Sum_probs=13.1
Q ss_pred CEEEEccCCCCchhhh
Q 037567 30 DCLVVMATGSGKSLCY 45 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~ 45 (374)
-+.+.|++|||||...
T Consensus 24 ~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999654
No 454
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=66.47 E-value=2.4 Score=34.09 Aligned_cols=18 Identities=33% Similarity=0.344 Sum_probs=14.6
Q ss_pred cCCCEEEEccCCCCchhh
Q 037567 27 EKRDCLVVMATGSGKSLC 44 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~ 44 (374)
.|.-+.+.||.|+|||..
T Consensus 29 ~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp TTCEEEEEECTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 356678999999999964
No 455
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=66.25 E-value=2.3 Score=35.84 Aligned_cols=16 Identities=38% Similarity=0.326 Sum_probs=13.4
Q ss_pred CEEEEccCCCCchhhh
Q 037567 30 DCLVVMATGSGKSLCY 45 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~ 45 (374)
-+++.|++|||||..+
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3688999999999754
No 456
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=66.17 E-value=2.3 Score=33.76 Aligned_cols=17 Identities=29% Similarity=0.221 Sum_probs=13.8
Q ss_pred CEEEEccCCCCchhhhh
Q 037567 30 DCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~ 46 (374)
.+.+.|++|||||...-
T Consensus 6 ~I~i~G~~GSGKST~~~ 22 (218)
T 1vht_A 6 IVALTGGIGSGKSTVAN 22 (218)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999997543
No 457
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=66.08 E-value=2.9 Score=47.00 Aligned_cols=20 Identities=20% Similarity=0.464 Sum_probs=16.8
Q ss_pred cCCCEEEEccCCCCchhhhh
Q 037567 27 EKRDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~~ 46 (374)
..+.++++||||+|||.++-
T Consensus 905 vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 905 INHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp TCSEEEEECSSSSSHHHHHH
T ss_pred heeeEEEECCCCCCHHHHHH
Confidence 36778999999999997763
No 458
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=66.00 E-value=2.1 Score=32.17 Aligned_cols=18 Identities=17% Similarity=0.115 Sum_probs=14.3
Q ss_pred cCCCEEEEccCCCCchhh
Q 037567 27 EKRDCLVVMATGSGKSLC 44 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~ 44 (374)
.|.-+.+.||.|+|||..
T Consensus 32 ~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SCEEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 355578999999999954
No 459
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=65.97 E-value=2.5 Score=34.09 Aligned_cols=19 Identities=26% Similarity=0.232 Sum_probs=15.2
Q ss_pred cCCCEEEEccCCCCchhhh
Q 037567 27 EKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~ 45 (374)
+|.-+.+.||.|+|||...
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl 51 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLL 51 (229)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3566789999999999643
No 460
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=65.96 E-value=2.9 Score=42.88 Aligned_cols=31 Identities=0% Similarity=-0.052 Sum_probs=24.4
Q ss_pred CcEEEEecchh-HHHHHHHHHHHcCCceeeee
Q 037567 229 GSIIVYCMTIK-DVEEISKALKQLGVKAGTYH 259 (374)
Q Consensus 229 ~~~lVf~~~~~-~~~~l~~~l~~~~~~~~~~~ 259 (374)
+.+.|.+++.. .+..+...|.+.++++....
T Consensus 343 ~diAVL~R~~~~~~~~i~~~L~~~gIP~~~~~ 374 (1166)
T 3u4q_B 343 KDVAILARQPEDYKDMVKEVFADYEIPYFIDG 374 (1166)
T ss_dssp GGEEEEESCGGGTHHHHHHHHHHTTCCEEESS
T ss_pred hheEEEeCChHHHHHHHHHHHHHcCCCEEECC
Confidence 45889999874 78889999999888865543
No 461
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=65.92 E-value=2.5 Score=34.57 Aligned_cols=19 Identities=32% Similarity=0.223 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCCCchhhh
Q 037567 27 EKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~ 45 (374)
.|.-+.+.||.|+|||...
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl 52 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLT 52 (247)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3566789999999999653
No 462
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=65.79 E-value=2.4 Score=35.27 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=14.8
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
|.-+.+.||.|||||...
T Consensus 34 Ge~~~iiGpnGsGKSTLl 51 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLF 51 (275)
T ss_dssp TSEEEEECCTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 566789999999999653
No 463
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=65.75 E-value=3.1 Score=39.80 Aligned_cols=71 Identities=17% Similarity=0.222 Sum_probs=46.8
Q ss_pred CCcEEEEecchhHHHHH-HHHHHHcC---CceeeeecCCChHHHHHHHHhhhcCCeeEEEEec-cccc-----------c
Q 037567 228 AGSIIVYCMTIKDVEEI-SKALKQLG---VKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM-AFGM-----------G 291 (374)
Q Consensus 228 ~~~~lVf~~~~~~~~~l-~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~-~~~~-----------G 291 (374)
++++||.+|++.-+... .+.+++.. +.+..++|+.+..++...+. +..+|+|+|+ .+.. .
T Consensus 56 ~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~ 131 (699)
T 4gl2_A 56 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAG 131 (699)
T ss_dssp CCCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------C
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccc
Confidence 37899999999988888 88887753 78999999876554333222 4678999997 3332 2
Q ss_pred ccccCccEEEE
Q 037567 292 IDKPDVRHVIH 302 (374)
Q Consensus 292 ~d~~~~~~vi~ 302 (374)
+.+..+++||.
T Consensus 132 ~~~~~~~lvVi 142 (699)
T 4gl2_A 132 VQLSDFSLIII 142 (699)
T ss_dssp CCGGGCSEEEE
T ss_pred eecccCcEEEE
Confidence 35566777663
No 464
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=65.74 E-value=10 Score=32.99 Aligned_cols=76 Identities=11% Similarity=0.022 Sum_probs=54.1
Q ss_pred CCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhh---hhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccE
Q 037567 53 GKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSV---QTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCL 129 (374)
Q Consensus 53 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~ 129 (374)
..++||+++++.-++.+.+.+...+..+..+++....... ......+..+|+|+|.- +. ..+...++++
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-~~-------~Gidip~~~~ 314 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNV-LA-------RGIDIPTVSM 314 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGG-GS-------SSCCCTTEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECCh-hh-------cCCCcccCCE
Confidence 5789999999999999999999999988888887654432 22334567889999942 11 2233456777
Q ss_pred EEEeccc
Q 037567 130 FAVDEAH 136 (374)
Q Consensus 130 vviDE~h 136 (374)
||.-+..
T Consensus 315 Vi~~~~p 321 (395)
T 3pey_A 315 VVNYDLP 321 (395)
T ss_dssp EEESSCC
T ss_pred EEEcCCC
Confidence 7765544
No 465
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=65.60 E-value=2.5 Score=34.83 Aligned_cols=19 Identities=42% Similarity=0.506 Sum_probs=15.3
Q ss_pred cCCCEEEEccCCCCchhhh
Q 037567 27 EKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~ 45 (374)
.|.-+.+.||.|+|||...
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIA 63 (260)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3566789999999999643
No 466
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=65.57 E-value=4.2 Score=34.72 Aligned_cols=15 Identities=20% Similarity=0.071 Sum_probs=12.5
Q ss_pred EEEEccCCCCchhhh
Q 037567 31 CLVVMATGSGKSLCY 45 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~ 45 (374)
+.+.||+|||||..+
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 568999999999653
No 467
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=65.38 E-value=10 Score=33.08 Aligned_cols=56 Identities=7% Similarity=0.052 Sum_probs=44.0
Q ss_pred CCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhh---hhhhhcCCeeEEEEcC
Q 037567 53 GKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSV---QTKAETGYFQLLFMTP 108 (374)
Q Consensus 53 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~i~T~ 108 (374)
..++||+++++.-++.+.+.+...+..+..+++....... ......+...|+|+|.
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 316 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD 316 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS
T ss_pred CCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC
Confidence 5689999999999999999999999888888876654432 2233456788999994
No 468
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=65.38 E-value=7.9 Score=30.59 Aligned_cols=72 Identities=8% Similarity=0.057 Sum_probs=46.3
Q ss_pred CCCcEEEEecchhHHHHHHHHHHHc--------CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEec-cc----cc-cc
Q 037567 227 GAGSIIVYCMTIKDVEEISKALKQL--------GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM-AF----GM-GI 292 (374)
Q Consensus 227 ~~~~~lVf~~~~~~~~~l~~~l~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~-~~----~~-G~ 292 (374)
.+.+++|.+|++.-+.++++.+++. +..+..++|+.+..+. .+.+ .+..+|+|+|+ .+ .. .+
T Consensus 71 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~-~~~~~Iiv~Tp~~l~~~l~~~~~ 146 (219)
T 1q0u_A 71 AEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKA---LEKL-NVQPHIVIGTPGRINDFIREQAL 146 (219)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHT---TCCC-SSCCSEEEECHHHHHHHHHTTCC
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHH---HHHc-CCCCCEEEeCHHHHHHHHHcCCC
Confidence 3568999999999999998887764 4667777777543321 1112 23568999996 21 12 34
Q ss_pred cccCccEEEE
Q 037567 293 DKPDVRHVIH 302 (374)
Q Consensus 293 d~~~~~~vi~ 302 (374)
++..++.+|.
T Consensus 147 ~~~~~~~lVi 156 (219)
T 1q0u_A 147 DVHTAHILVV 156 (219)
T ss_dssp CGGGCCEEEE
T ss_pred CcCcceEEEE
Confidence 5556666663
No 469
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=65.28 E-value=2.6 Score=38.57 Aligned_cols=17 Identities=41% Similarity=0.407 Sum_probs=14.6
Q ss_pred CCCEEEEccCCCCchhh
Q 037567 28 KRDCLVVMATGSGKSLC 44 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~ 44 (374)
+.++++.|+||||||..
T Consensus 167 ~pHlLIaG~TGSGKSt~ 183 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVG 183 (512)
T ss_dssp SCSEEEECCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46789999999999954
No 470
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=65.08 E-value=9.9 Score=27.12 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=31.8
Q ss_pred hcCC-CcEEEEe-cchhHHHHHHHHHHHcCCceeeeecCCC
Q 037567 225 VAGA-GSIIVYC-MTIKDVEEISKALKQLGVKAGTYHGQMG 263 (374)
Q Consensus 225 ~~~~-~~~lVf~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 263 (374)
+..+ .++++|| .+-..+...+..|+..|+++..+.|++.
T Consensus 85 ~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 85 LALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp HHTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred hccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 3456 8899999 4777788999999999998888888754
No 471
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=65.05 E-value=2.5 Score=37.86 Aligned_cols=31 Identities=23% Similarity=0.199 Sum_probs=20.0
Q ss_pred CEEEEccCCCCchhhhhcccc---ccCCcEEEEc
Q 037567 30 DCLVVMATGSGKSLCYQLPPL---VTGKTALVVS 60 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~l~~~---~~~~~~lil~ 60 (374)
.+++.+++|+|||.+....+. ..+.+++++.
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 578899999999965432221 2356666654
No 472
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=65.02 E-value=10 Score=35.63 Aligned_cols=55 Identities=16% Similarity=0.127 Sum_probs=43.5
Q ss_pred CCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhhhhhhhcCCeeEEEEcC
Q 037567 53 GKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTP 108 (374)
Q Consensus 53 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~ 108 (374)
..++||+++++.-++.+.+.+...+..+..+++. ...........+..+|+|+|.
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~-~R~~~l~~F~~g~~~VLVaTd 409 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK-TFDTEYPKTKLTDWDFVVTTD 409 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT-THHHHTTHHHHSCCSEEEECG
T ss_pred CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH-HHHHHHHhhcCCCcEEEEECc
Confidence 5689999999999999999999999988887763 222333444567789999994
No 473
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=64.84 E-value=2.7 Score=34.61 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=15.1
Q ss_pred cCCCEEEEccCCCCchhhh
Q 037567 27 EKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~ 45 (374)
.|.-+.+.||.|+|||...
T Consensus 32 ~Ge~~~liG~nGsGKSTLl 50 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLI 50 (257)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3566789999999999653
No 474
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=64.77 E-value=30 Score=33.66 Aligned_cols=66 Identities=14% Similarity=0.171 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhhcCCCcEEEEecchhHHHHHHHHHHH----cCCceeeeecCCChHHHHHHHHhhhcCCeeEEEEec
Q 037567 214 VDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQ----LGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM 286 (374)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~lVf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~ 286 (374)
+.-.+.-++..+ .+..++|.+++..-|.+.++.+.. .|+++..+.|+++..++.... ..+|+++|+
T Consensus 111 laf~LP~~l~aL-~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTp 180 (844)
T 1tf5_A 111 LTSTLPVYLNAL-TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTN 180 (844)
T ss_dssp HHHHHHHHHHHT-TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEH
T ss_pred HHHHHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 333344343443 567899999999988877766544 589999999999876655432 258999997
No 475
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=64.77 E-value=18 Score=30.28 Aligned_cols=68 Identities=10% Similarity=0.051 Sum_probs=45.6
Q ss_pred CCcEEEEecchhHHHHHHHHHHHc-----CCceeeeecCCChHHHHHHHHhhhcCCeeEEEEecc-c-----c-cccccc
Q 037567 228 AGSIIVYCMTIKDVEEISKALKQL-----GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMA-F-----G-MGIDKP 295 (374)
Q Consensus 228 ~~~~lVf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~-~-----~-~G~d~~ 295 (374)
+.++||.+|++.-+..+++.++.. +..+...+|+....... ....+|+|+|+- + . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 346999999999999998888764 34566666664432211 345689999982 2 1 245677
Q ss_pred CccEEEE
Q 037567 296 DVRHVIH 302 (374)
Q Consensus 296 ~~~~vi~ 302 (374)
++.++|.
T Consensus 235 ~l~~lVl 241 (300)
T 3fmo_B 235 KIKVFVL 241 (300)
T ss_dssp GCSEEEE
T ss_pred hceEEEE
Confidence 7887774
No 476
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=64.77 E-value=2.9 Score=34.40 Aligned_cols=60 Identities=13% Similarity=-0.045 Sum_probs=38.1
Q ss_pred HHHHHHc-----CCCEEEEccCCCCchhh---hhccccccCCcEEEEcchHHHHHHHHHHHHHcCCceE
Q 037567 21 VIQRIIE-----KRDCLVVMATGSGKSLC---YQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGINAE 81 (374)
Q Consensus 21 ~~~~~~~-----~~~~l~~a~tGsGKT~~---~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 81 (374)
.++.++. +..+++.+++|+|||.. |+...+.++-++++++-. +-..+..+.++.+|+...
T Consensus 9 ~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~-e~~~~l~~~~~~~G~dl~ 76 (260)
T 3bs4_A 9 ELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSIS-YPLQLIIRILSRFGVDVI 76 (260)
T ss_dssp HHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECS-SCHHHHHHHHHHTTCCHH
T ss_pred HHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEe-CCHHHHHHHHHHcCCCHH
Confidence 3455554 34567777888887732 223345567788887664 556667778888877643
No 477
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=64.50 E-value=2.6 Score=35.41 Aligned_cols=15 Identities=33% Similarity=0.383 Sum_probs=12.4
Q ss_pred EEEEccCCCCchhhh
Q 037567 31 CLVVMATGSGKSLCY 45 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~ 45 (374)
+.|.|++|||||..+
T Consensus 34 i~I~G~sGsGKSTla 48 (290)
T 1odf_A 34 IFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 468999999999654
No 478
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=64.35 E-value=45 Score=25.38 Aligned_cols=94 Identities=9% Similarity=0.090 Sum_probs=50.7
Q ss_pred CCchhHHHHHHHHHcCCCEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHHcCC--ceEEcCCCCCch
Q 037567 13 VFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGI--NAEFLGSAQTDS 90 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~--~~~~~~~~~~~~ 90 (374)
++.++..............++...+|+|-....+........+++-+=.....+....+.+...+. ++.+..++....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 86 (197)
T 3eey_A 7 NSLGQSHDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNM 86 (197)
T ss_dssp CHHHHHHHHHHHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGG
T ss_pred hHHHHHHHHHHhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHH
Confidence 333443444444445566789999999966554443332334666666666666666666666554 444444432111
Q ss_pred hhhhhhhcCCeeEEEEcCc
Q 037567 91 SVQTKAETGYFQLLFMTPE 109 (374)
Q Consensus 91 ~~~~~~~~~~~~i~i~T~~ 109 (374)
. ....+.+|++++.+.
T Consensus 87 ~---~~~~~~fD~v~~~~~ 102 (197)
T 3eey_A 87 D---KYIDCPVKAVMFNLG 102 (197)
T ss_dssp G---GTCCSCEEEEEEEES
T ss_pred h---hhccCCceEEEEcCC
Confidence 1 112245677776653
No 479
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=64.31 E-value=2.7 Score=36.80 Aligned_cols=18 Identities=33% Similarity=0.211 Sum_probs=14.9
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
++.+++.||+|+|||...
T Consensus 169 ~~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 567789999999999654
No 480
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=64.20 E-value=2.7 Score=33.08 Aligned_cols=15 Identities=40% Similarity=0.414 Sum_probs=12.7
Q ss_pred CEEEEccCCCCchhh
Q 037567 30 DCLVVMATGSGKSLC 44 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~ 44 (374)
-.++.||+|+|||..
T Consensus 25 ~~~I~G~NgsGKSti 39 (203)
T 3qks_A 25 INLIIGQNGSGKSSL 39 (203)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEEcCCCCCHHHH
Confidence 458899999999965
No 481
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=64.19 E-value=13 Score=35.29 Aligned_cols=52 Identities=19% Similarity=0.047 Sum_probs=42.0
Q ss_pred CCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhhhhhhhcCCeeEEEEcC
Q 037567 53 GKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTP 108 (374)
Q Consensus 53 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~T~ 108 (374)
..++||+++++.-++++.+.++..+..+..+++....... ..+..+|+|+|.
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~er----~~~~~~VLVATd 447 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSVI----PTIGDVVVVATD 447 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGGS----CSSSCEEEEECT
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHHH----HhCCCcEEEECC
Confidence 5689999999999999999999999998888877655432 234458999994
No 482
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=64.17 E-value=2.8 Score=34.06 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=15.2
Q ss_pred cCCCEEEEccCCCCchhhh
Q 037567 27 EKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~ 45 (374)
.|.-+.+.||.|+|||...
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTL 49 (240)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3566789999999999653
No 483
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=63.97 E-value=2.8 Score=34.70 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=14.8
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
|.-+.+.||.|+|||...
T Consensus 37 Ge~~~liG~nGsGKSTLl 54 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLL 54 (266)
T ss_dssp TCEEEEECCTTSCHHHHH
T ss_pred CCEEEEECCCCCcHHHHH
Confidence 566789999999999653
No 484
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=63.78 E-value=2.8 Score=34.32 Aligned_cols=16 Identities=38% Similarity=0.096 Sum_probs=13.1
Q ss_pred CEEEEccCCCCchhhh
Q 037567 30 DCLVVMATGSGKSLCY 45 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~ 45 (374)
.+.|.|++|||||...
T Consensus 24 iI~I~G~~GSGKST~a 39 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVC 39 (252)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999654
No 485
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=63.78 E-value=2.9 Score=34.55 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=14.6
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
|.-+.+.||.|+|||...
T Consensus 32 Ge~~~liG~nGsGKSTLl 49 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFL 49 (262)
T ss_dssp TCEEEEECCTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 556789999999999643
No 486
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=67.49 E-value=1.5 Score=33.45 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=41.4
Q ss_pred cCCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhh---hhhhhcCCeeEEEEc
Q 037567 52 TGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSV---QTKAETGYFQLLFMT 107 (374)
Q Consensus 52 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~i~T 107 (374)
...++||+++++..+..+.+.+...+..+..+++....... ......+...|+|+|
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT 87 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 87 (170)
Confidence 35689999999999999999999888887777765443322 222334667899998
No 487
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=63.58 E-value=2.4 Score=32.41 Aligned_cols=18 Identities=28% Similarity=0.191 Sum_probs=15.1
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
+..+++.|+.|+|||..+
T Consensus 16 G~gvli~G~SGaGKStla 33 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELS 33 (181)
T ss_dssp TEEEEEEESSSSSHHHHH
T ss_pred CEEEEEEcCCCCCHHHHH
Confidence 567899999999999654
No 488
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=63.57 E-value=54 Score=25.99 Aligned_cols=66 Identities=11% Similarity=0.029 Sum_probs=43.4
Q ss_pred CCchhHHHHHHHHHc--CCCEEEEccCCCCchhhhhccccccCCcEEEEcchHHHHHHHHHHHHHcCC
Q 037567 13 VFRPYQKDVIQRIIE--KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGI 78 (374)
Q Consensus 13 ~~~~~Q~~~~~~~~~--~~~~l~~a~tGsGKT~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 78 (374)
...+.+.+.+..+.. ....++...||+|-+..++...+....+++.+=+....+....+.+...+.
T Consensus 55 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~ 122 (232)
T 3cbg_A 55 QISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGV 122 (232)
T ss_dssp SCCHHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred CcCHHHHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 346677777766543 445688888999988766665554456677776666666665566665554
No 489
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=63.38 E-value=2.8 Score=35.05 Aligned_cols=17 Identities=35% Similarity=0.186 Sum_probs=13.8
Q ss_pred CEEEEccCCCCchhhhh
Q 037567 30 DCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 30 ~~l~~a~tGsGKT~~~~ 46 (374)
-+.+.|++|||||...-
T Consensus 77 iI~I~G~~GSGKSTva~ 93 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQ 93 (281)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36789999999997653
No 490
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=63.24 E-value=2.5 Score=34.48 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=15.0
Q ss_pred cCCCEEEEccCCCCchhhh
Q 037567 27 EKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~ 45 (374)
.|.-+.+.||.|+|||...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl 45 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIF 45 (243)
T ss_dssp TTEEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3556789999999999643
No 491
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=62.97 E-value=1.5 Score=34.68 Aligned_cols=15 Identities=20% Similarity=0.200 Sum_probs=12.6
Q ss_pred EEEEccCCCCchhhh
Q 037567 31 CLVVMATGSGKSLCY 45 (374)
Q Consensus 31 ~l~~a~tGsGKT~~~ 45 (374)
+++.|++|||||...
T Consensus 3 I~i~G~~GsGKsTl~ 17 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLV 17 (214)
T ss_dssp EEEEEEEEEEHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 578999999999653
No 492
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=62.96 E-value=12 Score=32.85 Aligned_cols=72 Identities=10% Similarity=0.017 Sum_probs=51.0
Q ss_pred CCcEEEEcchHHHHHHHHHHHHHcCCceEEcCCCCCchhh---hhhhhcCCeeEEEEcCcccccCchhhHHHHHhcCccE
Q 037567 53 GKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSV---QTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCL 129 (374)
Q Consensus 53 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~i~T~~~l~~~~~~~~~~~~~~~~~~ 129 (374)
..++||+++++.-++.+.+.+...+..+..+++.....+. ......+...|+|+|.- +. ..+...++++
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-~~-------~Gidi~~v~~ 347 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDV-WA-------RGLDVPQVSL 347 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGG-GS-------SSCCCTTEEE
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECCh-hh-------CcCCcccCCE
Confidence 4689999999999999999999999988888877654432 22333567889999942 11 2233455666
Q ss_pred EEE
Q 037567 130 FAV 132 (374)
Q Consensus 130 vvi 132 (374)
||.
T Consensus 348 Vi~ 350 (410)
T 2j0s_A 348 IIN 350 (410)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 493
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=62.93 E-value=3.1 Score=34.25 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=15.1
Q ss_pred cCCCEEEEccCCCCchhhh
Q 037567 27 EKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~ 45 (374)
.|.-+.+.||.|+|||...
T Consensus 40 ~Gei~~l~G~NGsGKSTLl 58 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTL 58 (256)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3566789999999999643
No 494
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=62.62 E-value=3.1 Score=34.02 Aligned_cols=19 Identities=26% Similarity=0.204 Sum_probs=15.1
Q ss_pred cCCCEEEEccCCCCchhhh
Q 037567 27 EKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~ 45 (374)
.|.-+.+.||.|+|||...
T Consensus 25 ~Ge~~~liG~NGsGKSTLl 43 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLL 43 (249)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 3566789999999999643
No 495
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=62.59 E-value=3.1 Score=33.68 Aligned_cols=19 Identities=26% Similarity=0.165 Sum_probs=14.9
Q ss_pred CCCEEEEccCCCCchhhhh
Q 037567 28 KRDCLVVMATGSGKSLCYQ 46 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~~ 46 (374)
...+.+.||+|||||...-
T Consensus 9 ~~~i~i~G~~GsGKsTla~ 27 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSR 27 (233)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3457889999999997643
No 496
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=62.57 E-value=3.1 Score=34.03 Aligned_cols=19 Identities=21% Similarity=0.155 Sum_probs=15.2
Q ss_pred cCCCEEEEccCCCCchhhh
Q 037567 27 EKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~ 45 (374)
.|.-+.+.||.|+|||...
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl 46 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLG 46 (250)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3566789999999999553
No 497
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=62.55 E-value=3.1 Score=34.45 Aligned_cols=19 Identities=26% Similarity=0.204 Sum_probs=15.1
Q ss_pred cCCCEEEEccCCCCchhhh
Q 037567 27 EKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~ 45 (374)
.|.-+.+.||.|+|||...
T Consensus 45 ~Ge~~~l~G~NGsGKSTLl 63 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLS 63 (267)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3566789999999999653
No 498
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=62.52 E-value=2.5 Score=32.33 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=14.5
Q ss_pred HHHHHHHcCCCEEEEccCCCCchhh
Q 037567 20 DVIQRIIEKRDCLVVMATGSGKSLC 44 (374)
Q Consensus 20 ~~~~~~~~~~~~l~~a~tGsGKT~~ 44 (374)
..-+.-.+.-.+++.|++|+|||..
T Consensus 13 ~~~~~~~~~~~i~v~G~~~~GKSsl 37 (181)
T 2h17_A 13 GLVPRGSQEHKVIIVGLDNAGKTTI 37 (181)
T ss_dssp --------CEEEEEEEETTSSHHHH
T ss_pred CccCCCCceeEEEEECCCCCCHHHH
Confidence 3333333445789999999999964
No 499
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=62.48 E-value=3.1 Score=34.52 Aligned_cols=19 Identities=32% Similarity=0.288 Sum_probs=15.1
Q ss_pred cCCCEEEEccCCCCchhhh
Q 037567 27 EKRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 27 ~~~~~l~~a~tGsGKT~~~ 45 (374)
.|.-+.+.||.|+|||...
T Consensus 44 ~Ge~~~i~G~nGsGKSTLl 62 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVA 62 (271)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3566789999999999643
No 500
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=62.47 E-value=3.1 Score=34.33 Aligned_cols=18 Identities=33% Similarity=0.403 Sum_probs=14.6
Q ss_pred CCCEEEEccCCCCchhhh
Q 037567 28 KRDCLVVMATGSGKSLCY 45 (374)
Q Consensus 28 ~~~~l~~a~tGsGKT~~~ 45 (374)
|.-+.+.||.|+|||...
T Consensus 50 Gei~~liG~NGsGKSTLl 67 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFL 67 (263)
T ss_dssp TCEEEEECCTTSSHHHHH
T ss_pred CCEEEEEcCCCCcHHHHH
Confidence 556789999999999653
Done!