BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037568
(423 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%)
Query: 361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSS 413
E +C +C+ + LR L C+H FH CVDKWLK N +CP+C+++ G SS
Sbjct: 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPSS 74
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 52.4 bits (124), Expect = 5e-07, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 365 CCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEI 409
C ICL+ + +++R L C H+FH CVD+WL N CP+C+ +I
Sbjct: 17 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 365 CCICLAKYVDDDELRELI-CSHVFHVDCVDKWLKINASCPLCK 406
C +CLA+ D +E R L C H FH +CVD WL +++CPLC+
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCK 406
G++ C IC ++YV D EL C H FH CV WL+ + +CP+C+
Sbjct: 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCR 84
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLC 405
+C +CL + DEL C H FH C+ KWL++ CPLC
Sbjct: 17 LCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLC 58
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 349 AAGTEKERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSE 408
++GTE E + SG + C +C Y + +R+L C+H+FH C+ WL+ + SCP+C+
Sbjct: 5 SSGTE-EHVGSGLE--CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKS 61
Query: 409 I 409
+
Sbjct: 62 L 62
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 42.7 bits (99), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 16/81 (19%)
Query: 353 EKERMISGEDAV-------------CCICLAKYVDDDELRELICSHVFHVDCVDKWLKIN 399
EKE+M + ++ V C IC ++ E L C+H F C+++W+K
Sbjct: 31 EKEKMQAQKEEVLSHMNDVLENELQCIICSEYFI---EAVTLNCAHSFCSYCINEWMKRK 87
Query: 400 ASCPLCKSEIGDSSSPLVQDS 420
CP+C+ +I + LV D+
Sbjct: 88 IECPICRKDIKSKTYSLVLDN 108
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 42.4 bits (98), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 16/81 (19%)
Query: 353 EKERMISGEDAV-------------CCICLAKYVDDDELRELICSHVFHVDCVDKWLKIN 399
EKE+M + ++ V C IC ++ E L C+H F C+++W+K
Sbjct: 31 EKEKMQAQKEEVLSHMNDVLENELQCIICSEYFI---EAVTLNCAHSFCSYCINEWMKRK 87
Query: 400 ASCPLCKSEIGDSSSPLVQDS 420
CP+C+ +I + LV D+
Sbjct: 88 IECPICRKDIKSKTYSLVLDN 108
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 16/81 (19%)
Query: 353 EKERMISGEDAV-------------CCICLAKYVDDDELRELICSHVFHVDCVDKWLKIN 399
EKE+M + ++ V C IC ++ E L C+H F C+++W+K
Sbjct: 42 EKEKMQAQKEEVLSHMNDVLENELQCIICSEYFI---EAVTLNCAHSFCSYCINEWMKRK 98
Query: 400 ASCPLCKSEIGDSSSPLVQDS 420
CP+C+ +I + LV D+
Sbjct: 99 IECPICRKDIKSKTYSLVLDN 119
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 36.6 bits (83), Expect = 0.027, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 382 ICSHVFHVDCVDKWLKINASCPLCKSE 408
+C+H FH C+ +WLK CPL E
Sbjct: 83 VCNHAFHFHCISRWLKTRQVCPLDNRE 109
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 36.2 bits (82), Expect = 0.032, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 382 ICSHVFHVDCVDKWLKINASCPLCKSE 408
+C+H FH C+ +WLK CPL E
Sbjct: 56 VCNHAFHFHCISRWLKTRQVCPLDNRE 82
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 36.2 bits (82), Expect = 0.032, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 382 ICSHVFHVDCVDKWLKINASCPLCKSE 408
+C+H FH C+ +WLK CPL E
Sbjct: 64 VCNHAFHFHCISRWLKTRQVCPLDNRE 90
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 36.2 bits (82), Expect = 0.033, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 382 ICSHVFHVDCVDKWLKINASCPLCKSE 408
+C+H FH C+ +WLK CPL E
Sbjct: 74 VCNHAFHFHCISRWLKTRQVCPLDNRE 100
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 36.2 bits (82), Expect = 0.038, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 382 ICSHVFHVDCVDKWLKINASCPLCKSE 408
+C+H FH C+ +WLK CPL E
Sbjct: 66 VCNHAFHFHCISRWLKTRQVCPLDNRE 92
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEI---GDSSSP 415
++ CCIC+ D L C+H F C+DKW + +CP+C+ ++ +SS P
Sbjct: 14 DEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESSGP 67
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 34.7 bits (78), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 382 ICSHVFHVDCVDKWLKINASCPL 404
+C+H FH C+ +WLK CPL
Sbjct: 72 VCNHAFHFHCISRWLKTRQVCPL 94
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 382 ICSHVFHVDCVDKWLKINASCPL 404
+C+H FH C+ +WLK CPL
Sbjct: 72 VCNHAFHFHCISRWLKTRQVCPL 94
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 381 LICSHVFHVDCVDKWLKINASCPLCKSEIGDSSSPLVQDS 420
L C H F C+ +W++ N +CPLCK + + DS
Sbjct: 22 LPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHTIESDS 61
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 32.3 bits (72), Expect = 0.54, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSSSPLV 417
+C +C ++D + E C H F C+ ++L+ + CP+C ++ + PL+
Sbjct: 13 MCVLCGGYFIDATTIIE--CLHSFCKTCIVRYLETSKYCPICDVQV-HKTRPLL 63
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 32.3 bits (72), Expect = 0.58, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSSSPLV 417
+C +C ++D + E C H F C+ ++L+ + CP+C ++ + PL+
Sbjct: 17 MCVLCGGYFIDATTIIE--CLHSFCKTCIVRYLETSKYCPICDVQV-HKTRPLL 67
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 32.0 bits (71), Expect = 0.60, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSSSPLV 417
+C +C ++D + E C H F C+ ++L+ + CP+C ++ + PL+
Sbjct: 17 MCVLCGGYFIDATTIIE--CLHSFCKTCIVRYLETSKYCPICDVQV-HKTRPLL 67
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 383 CSHVFHVDCVDKWLKINASCPLCKSE 408
C+H FH C+ W+K N CPLC+ +
Sbjct: 48 CNHSFHNCCMSLWVKQNNRCPLCQQD 73
>pdb|3FL2|A Chain A, Crystal Structure Of The Ring Domain Of The E3 Ubiquitin-
Protein Ligase Uhrf1
Length = 124
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 349 AAGTEKERMISG-EDAVCCICLAKYVDDDELREL--ICSHVFHVDCVDKWLKINA-SCPL 404
A+G+ + +S E+ CIC + V R + +C H DC+D+ + SCP
Sbjct: 37 ASGSPFQLFLSKVEETFQCICCQELV----FRPITTVCQHNVCKDCLDRSFRAQVFSCPA 92
Query: 405 CKSEIGDSSSPLVQDSAQ 422
C+ ++G S + V Q
Sbjct: 93 CRYDLGRSYAMQVNQPLQ 110
>pdb|1A4V|A Chain A, Alpha-Lactalbumin
Length = 123
Score = 29.3 bits (64), Expect = 4.7, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 338 DNSGGTEGGVLAAGTE---KERMISGEDAVCCICLAKYVDDDELRELICS-HVFHVDCVD 393
+N+ TE G+ + K + +C I K++DDD +++C+ + + +D
Sbjct: 43 ENNESTEYGLFQISNKLWCKSSQVPQSRNICDISCDKFLDDDITDDIMCAKKILDIKGID 102
Query: 394 KWLKINASC 402
WL A C
Sbjct: 103 YWLAHKALC 111
>pdb|3B0I|A Chain A, Crystal Structure Of Recombinant Human Alpha Lactalbumin
Length = 124
Score = 29.3 bits (64), Expect = 4.8, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 338 DNSGGTEGGVLAAGTE---KERMISGEDAVCCICLAKYVDDDELRELICS-HVFHVDCVD 393
+N+ TE G+ + K + +C I K++DDD +++C+ + + +D
Sbjct: 44 ENNESTEYGLFQISNKLWCKSSQVPQSRNICDISCDKFLDDDITDDIMCAKKILDIKGID 103
Query: 394 KWLKINASC 402
WL A C
Sbjct: 104 YWLAHKALC 112
>pdb|3B0O|A Chain A, Crystal Structure Of Alpha-Lactalbumin
pdb|3B0O|B Chain B, Crystal Structure Of Alpha-Lactalbumin
Length = 123
Score = 28.9 bits (63), Expect = 5.2, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 338 DNSGGTEGGVLAAGTE---KERMISGEDAVCCICLAKYVDDDELRELICS-HVFHVDCVD 393
+N+ TE G+ + K + +C I K++DDD +++C+ + + +D
Sbjct: 43 ENNESTEYGLFQISNKLWCKSSQVPQSRNICDISCDKFLDDDITDDIMCAKKILDIKGID 102
Query: 394 KWLKINASC 402
WL A C
Sbjct: 103 YWLAHKALC 111
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 365 CCICLAKYVDDDELRELI----CSHVFHVDCVDKWLKINASCPLCKSEI 409
C IC+ Y + + LI C HVF C+ LK +CP C+ +I
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61
>pdb|1B9O|A Chain A, Human Alpha-Lactalbumin, Low Temperature Form
Length = 123
Score = 28.9 bits (63), Expect = 6.1, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 338 DNSGGTEGGVLAAGTE---KERMISGEDAVCCICLAKYVDDDELRELICS-HVFHVDCVD 393
+N TE G+ + K + +C I K++DDD +++C+ + + +D
Sbjct: 43 ENDESTEYGLFQISNKLWCKSSQVPQSRNICDISCDKFLDDDITDDIMCAKKILDIKGID 102
Query: 394 KWLKINASC 402
WL A C
Sbjct: 103 YWLAHKALC 111
>pdb|3K1L|B Chain B, Crystal Structure Of Fancl
pdb|3K1L|A Chain A, Crystal Structure Of Fancl
Length = 381
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 16/76 (21%)
Query: 360 GEDAVCCICLAKYVDDDELRELICSHVF-----HVDCVDKWLKI-----------NASCP 403
E+ C IC A +D E+ + C + H C+++W K CP
Sbjct: 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCP 365
Query: 404 LCKSEIGDSSSPLVQD 419
CK+++ S + L+ D
Sbjct: 366 FCKAKLSTSFAALLND 381
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 381 LICSHVFHVDCVDKWLKINASCPLC 405
L C H+ H C ++ LK CPLC
Sbjct: 25 LPCGHLLHRTCYEEMLKEGYRCPLC 49
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,780,951
Number of Sequences: 62578
Number of extensions: 395948
Number of successful extensions: 703
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 680
Number of HSP's gapped (non-prelim): 41
length of query: 423
length of database: 14,973,337
effective HSP length: 101
effective length of query: 322
effective length of database: 8,652,959
effective search space: 2786252798
effective search space used: 2786252798
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)