BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037568
(423 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana
GN=At4g11680 PE=2 SV=1
Length = 390
Score = 158 bits (399), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 120/397 (30%), Positives = 185/397 (46%), Gaps = 56/397 (14%)
Query: 28 TDRDHIIDIT--TTDDASSSSSYDEQPHRMASPQHEDIPSTSTGVPSYHSSSSSSNRLNN 85
++ D IID T + + S DE+ ++P H + + S R+
Sbjct: 27 SNSDGIIDTTPFLPPTVTRTISVDEE----SNPIHRSARRQGLREAARFLRHAGSRRMMR 82
Query: 86 RSSFMMR---GDGYGRRRRSPLNSGLWISVELIVTVSQIIASIVVLSLSRNENPQAPLFA 142
S ++R + R+ S + ++++ ++ + + VL LSR+E P PL
Sbjct: 83 EPSMLVRETAAEQLEERQSDWAYSKPVVFLDILWNLAFVAIGVAVLILSRDEKPNMPLRV 142
Query: 143 WIVGYASGC---VATLPILYWRFRNRHQGIDSDSTQLRQGSSLPTPPEPTSSYTAISANQ 199
W+VGY C +A + + Y R R R D + L SS Y +++ +
Sbjct: 143 WVVGYGIQCWLHMACVCVEYRRRRRRRHPEDGGGSGLTNSSS--------QQYVSLAQLE 194
Query: 200 ASDEENNRSTETETGNGQNALNFGGRLNGLVDHFKMALDCFFAVWFVVGNVWI-FGGHSS 258
E +N + E+ N F +W+++G W+ GG +
Sbjct: 195 DRGETSNPAKHLESANTM----------------------FSFIWWIIGFYWVSAGGQTL 232
Query: 259 PSDAPKLYRLCIVFL----TFSCIGYAMPFILCATICCCLPCIISVLGIREDYSQTRGAT 314
SD+P+LY LCI+FL F A+ ++ +CCCLPCII++L D GA+
Sbjct: 233 SSDSPQLYWLCIIFLGFDVFFVVFCVALACVIGLAVCCCLPCIIAILYAVAD---QEGAS 289
Query: 315 AETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEK--ERMISGEDAVCCICLAKY 372
I+ +P ++F K GN+ + SG G + GT+ ER +S EDA CCICL +Y
Sbjct: 290 KNDIDQMPKFRFT--KTGNV--EKLSGKARGIMTECGTDSPIERSLSPEDAECCICLCEY 345
Query: 373 VDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEI 409
D ELREL C+H FH C+DKWL IN+ CPLCK I
Sbjct: 346 EDGVELRELPCNHHFHCTCIDKWLHINSRCPLCKFNI 382
>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana
GN=At1g12760 PE=2 SV=1
Length = 408
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 110/351 (31%), Positives = 175/351 (49%), Gaps = 24/351 (6%)
Query: 76 SSSSSNRLNNRSSFMMR---GDGYGRRRRSPLNSGLWISVELIVTVSQIIASIVVLSLSR 132
S +SS R+ S ++R + R+ S + ++++ ++ + + +L +SR
Sbjct: 64 SRASSGRVMREPSMLVREAAAEQLEERQSDWAYSKPVVVLDIVWNLAFVSVATAILVMSR 123
Query: 133 NENPQAPLFAWIVGYASGCVATLPILYWRFRNRHQGIDSDSTQLRQGSSLPTPPEPTSSY 192
E+P PL W++GYA CV + + ++ R+ + T P S
Sbjct: 124 KEHPIMPLRVWLLGYALQCVLHMVCV---------CVEYRRRNRRRTNRTTTTTPPRSRS 174
Query: 193 TAISANQASDEENNRSTETETGNGQNAL-NFGGRLNGLVDHFKMALDCFFAVWFVVGNVW 251
++ S++ +S EE + +G +L + + + H + A F +W+++G W
Sbjct: 175 SSSSSSSSSLEEEALGSRRNSGVQDLSLGHLDTESSSVAKHLESANTMFSFIWWIIGFYW 234
Query: 252 I-FGGHSSPSDAPKLYRLCIVFLTFSCIGY----AMPFILCATICCCLPCIISVLGIRED 306
+ GG ++P++Y L IVFL F A+ ++ +CCCLPCII+VL D
Sbjct: 235 VSAGGQELAQESPRIYWLSIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAVLYAVAD 294
Query: 307 YSQTRGATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLA-AGTEK--ERMISGEDA 363
GA+ E I L +KF+ + N + D + GT G++ GT+ E + EDA
Sbjct: 295 ---QEGASKEDIEQLTKFKFRKLGDANKHTNDEAQGTTEGIMTECGTDSPIEHTLLQEDA 351
Query: 364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSSS 414
CCICL+ Y D ELREL C H FH CVDKWL INA+CPLCK I SS+
Sbjct: 352 ECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLCKYNILKSSN 402
>sp|Q8LDB8|RING2_ARATH E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana
GN=At1g63170 PE=2 SV=2
Length = 381
Score = 139 bits (350), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 102/294 (34%), Positives = 144/294 (48%), Gaps = 25/294 (8%)
Query: 131 SRNENPQAPLFAWIVGYASGCVATLPILYWRFRNRHQGIDSDSTQLRQGSSLPTPPEPTS 190
S +ENP PL WI+GY C+ + + +R R+ D + SS +
Sbjct: 96 SSDENPNMPLRVWIIGYGLQCMMHMVCVCVEYRRRNSRRRRDLSPRSS-SSSSSSSSSMD 154
Query: 191 SYTAISANQASDEENNRSTETETGNGQNALNFGGRLNGLVDHFKMALDCFFAVWFVVGNV 250
+ ++ SDE + E N N H + A +W+V+G
Sbjct: 155 EEEGLGLSRNSDERYLELGQLENEN-----------NSFAKHLESANTMISFIWWVIGFY 203
Query: 251 WIF-GGHSSPSDAPKLYRLCIVFLTFSCIGY----AMPFILCATICCCLPCIISVLGIRE 305
W+ GG +P+LY LCIVFL F A+ ++ +CCCLPCII+VL
Sbjct: 204 WVSSGGQELAQGSPQLYWLCIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAVLYA-- 261
Query: 306 DYSQTRGATAETINALPTYKFKSKKN--GNLNDQDNSGGTEGGVLA-AGTEK--ERMISG 360
++ GA+ E I+ L +KF+ + + D++ G GGV+ GT+ E +
Sbjct: 262 -VAEQEGASKEDIDQLTKFKFRKVGDTMKHTVDEEQGQGDSGGVMTECGTDSPVEHALPH 320
Query: 361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSSS 414
EDA CCICL+ Y D+ ELREL C H FH CVDKWL INA+CPLCK I SS+
Sbjct: 321 EDAECCICLSAYEDETELRELPCGHHFHCGCVDKWLYINATCPLCKYNILKSSN 374
>sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1
PE=2 SV=1
Length = 359
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 139/308 (45%), Gaps = 42/308 (13%)
Query: 110 ISVELIVTVSQIIASIVVLSLSRNENPQAPLFAWIVGYASGCVATLPIL---YWRFRNRH 166
++ +++ + ++AS V+L + E P P+ WI Y C+ + ++ YWR +
Sbjct: 78 VAADILWNAALVLASAVMLVGTVEERPNEPIRVWICVYGLQCLFHVVLVWSEYWRRNSTR 137
Query: 167 QGIDSDSTQLRQGSSLPTPPEPTSSYTAISANQASDEENNRSTETETGNGQNALNFGGRL 226
+ D +S + I + D ++N +T + ++ +
Sbjct: 138 RARDLESYDHEDYN--------------IEYDYEQDSDDNSTTYSFVKRCES-------I 176
Query: 227 NGLVDHFKMALDCFFAVWFVVGNVWIF-GGHSSPSDAPKLYRLCIVFLT----FSCIGYA 281
N ++ +W+++G W+ GG +AP LY L ++FL F+
Sbjct: 177 NTVISF----------IWWIIGFYWVVEGGDKLLGEAPNLYWLSVIFLAIDVFFAVFCVV 226
Query: 282 MPFILCATICCCLPCIISVLGIREDYSQTRGATAETINALPTYKFKSKKNGNLNDQDNSG 341
+ ++ +CCCLPCII++L + T G + + LP YKFK+ + N
Sbjct: 227 LACLVGIALCCCLPCIIALL---YAVAGTEGVSEAELGVLPLYKFKAFHSNEKNITGPGK 283
Query: 342 GTEGGVLAAGTEKERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINAS 401
+ ER + EDA CCICL+ Y D EL L C+H FH C+ KWLK+ A+
Sbjct: 284 MVPIPINGLCLATERTLLAEDADCCICLSSYEDGAELHALPCNHHFHSTCIVKWLKMRAT 343
Query: 402 CPLCKSEI 409
CPLCK I
Sbjct: 344 CPLCKYNI 351
>sp|Q5SSZ7|ZNRF3_MOUSE E3 ubiquitin-protein ligase ZNRF3 OS=Mus musculus GN=Znrf3 PE=2
SV=1
Length = 913
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 67/151 (44%), Gaps = 22/151 (14%)
Query: 259 PSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDYSQTRGATAETI 318
P P Y +FL F F++ + +C L I + R S R A + +
Sbjct: 206 PPRQPTEYFDMGIFLAF--------FVVVSLVCLILLVKIKLKQRRSQNSMNRLAV-QAL 256
Query: 319 NALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMISGEDAVCCICLAKYVDDDEL 378
+ T KF SK G EG A T + SG + C ICL KY+D +EL
Sbjct: 257 EKMETRKFNSKSKGR---------REGSCGALDT----LSSGSTSDCAICLEKYIDGEEL 303
Query: 379 RELICSHVFHVDCVDKWLKINASCPLCKSEI 409
R + C+H FH CVD WL + +CP C+ I
Sbjct: 304 RVIPCTHRFHRKCVDPWLLQHHTCPHCRHNI 334
>sp|Q9LSW9|ATL16_ARATH RING-H2 finger protein ATL16 OS=Arabidopsis thaliana GN=ATL16 PE=2
SV=1
Length = 375
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 64/109 (58%), Gaps = 15/109 (13%)
Query: 309 QTRGATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMISGEDAVCCIC 368
++RG I A+P +KFK + + N GV E+E ++ C +C
Sbjct: 95 RSRGLDESVIRAIPIFKFKKRYDQN-----------DGVFTGEGEEEEEKRSQE--CSVC 141
Query: 369 LAKYVDDDELRELI-CSHVFHVDCVDKWLKINASCPLCKSEIG-DSSSP 415
L+++ D+++LR + CSH+FH+DC+D WL+ NA+CPLC++ + D+S P
Sbjct: 142 LSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVSCDTSFP 190
>sp|Q9LT17|BBR_ARATH E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana
GN=BBR PE=2 SV=1
Length = 340
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 26/107 (24%)
Query: 308 SQTRGATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMISGEDAVCCI 367
+++RG +A+TI +LP+ ++K N N G + C I
Sbjct: 257 TESRGLSADTIASLPSKRYKEGDNQN--------------------------GTNESCVI 290
Query: 368 CLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSSS 414
C Y DD++L L C H +H +C++ WLKIN CP+C +E+ S+S
Sbjct: 291 CRLDYEDDEDLILLPCKHSYHSECINNWLKINKVCPVCSAEVSTSTS 337
>sp|P93823|ATL1_ARATH RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2
SV=1
Length = 381
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 21/110 (19%)
Query: 301 LGIREDYSQTRGATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMISG 360
L I + RG I A+P +KFK + + AG E + S
Sbjct: 90 LMIYSPHEVNRGLDESAIRAIPVFKFKKRD-----------------VVAGEEDQSKNSQ 132
Query: 361 EDAVCCICLAKYVDDDELRELI-CSHVFHVDCVDKWLKINASCPLCKSEI 409
E C +CL ++ +D++LR + C HVFH+DC+D WL+ NA+CPLC++ +
Sbjct: 133 E---CSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSV 179
>sp|Q4KLR8|ZNRF3_XENLA E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus laevis GN=znrf3 PE=2
SV=1
Length = 784
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 22/151 (14%)
Query: 259 PSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDYSQTRGATAETI 318
P P Y +FL F F++ + +C L I + R S R A + +
Sbjct: 118 PPRQPTEYFDMGIFLAF--------FVVVSLVCLILLIKIKLKQRRSQNSMNRMAV-QAL 168
Query: 319 NALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMISGEDAVCCICLAKYVDDDEL 378
+ T KFK+K G ++ + + GG + + S + C ICL KY+D +EL
Sbjct: 169 EKMETRKFKAK--GKVSREGSCGGLD-----------TLSSSSISDCAICLEKYIDGEEL 215
Query: 379 RELICSHVFHVDCVDKWLKINASCPLCKSEI 409
R + C+H FH CVD WL N +CP C+ I
Sbjct: 216 RVIPCTHRFHKRCVDPWLLQNHTCPHCRHNI 246
>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1
Length = 347
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 25/119 (21%)
Query: 302 GIREDYSQ-----------TRGATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAA 350
+RE Y + TRGA TI T+ K KK QD+ G + G +
Sbjct: 235 AVRESYEELLQLEDRLGNVTRGAVQNTIERF-TFPHKYKKR---RPQDSKGKKDEGEESD 290
Query: 351 GTEKERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEI 409
EK C ICL+ D +++R L C H+FH CVD+WL ++ CP+C+ +I
Sbjct: 291 TDEK----------CTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDI 339
>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1
Length = 346
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 25/119 (21%)
Query: 302 GIREDYSQ-----------TRGATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAA 350
+RE Y + TRGA TI T+ K KK QD G + G +
Sbjct: 234 AVRESYEELLQLEDRLGNVTRGAVQNTIERF-TFPHKYKKR---RPQDGKGKKDEGEESD 289
Query: 351 GTEKERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEI 409
EK C ICL+ D +++R L C H+FH CVD+WL ++ CP+C+ +I
Sbjct: 290 TDEK----------CTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDI 338
>sp|Q9ULT6|ZNRF3_HUMAN E3 ubiquitin-protein ligase ZNRF3 OS=Homo sapiens GN=ZNRF3 PE=1
SV=3
Length = 936
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 64/151 (42%), Gaps = 22/151 (14%)
Query: 259 PSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDYSQTRGATAETI 318
P P Y +FL F F++ + +C L I + R S R A + +
Sbjct: 209 PPRQPTEYFDMGIFLAF--------FVVVSLVCLILLVKIKLKQRRSQNSMNRLAV-QAL 259
Query: 319 NALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMISGEDAVCCICLAKYVDDDEL 378
+ T KF SK G EG A T + C ICL KY+D +EL
Sbjct: 260 EKMETRKFNSKSKGR---------REGSCGALDTLSSSST----SDCAICLEKYIDGEEL 306
Query: 379 RELICSHVFHVDCVDKWLKINASCPLCKSEI 409
R + C+H FH CVD WL + +CP C+ I
Sbjct: 307 RVIPCTHRFHRKCVDPWLLQHHTCPHCRHNI 337
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 64/151 (42%), Gaps = 39/151 (25%)
Query: 280 YAMPFILCATICCCLPCIISVLGIREDYSQTRGAT--AETINALPTYKFKSKKNGNLNDQ 337
Y +PF++ IC L I + +D + R + + LP +KFK
Sbjct: 183 YLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKK--------- 233
Query: 338 DNSGGTEGGVLAAGTEKERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWL- 396
E VC ICL +Y D D+LR L CSH +H CVD WL
Sbjct: 234 ---------------------GDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLT 272
Query: 397 KINASCPLCKSEI----GDSSSPLVQDSAQH 423
K +CP+CK ++ GDS S DS+Q
Sbjct: 273 KTKKTCPVCKQKVVPSQGDSDSE--TDSSQE 301
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 66/156 (42%), Gaps = 40/156 (25%)
Query: 254 GGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDYSQTRGA 313
G + S S A + R +TF G ++PF+ A L +D Q RG
Sbjct: 514 GSNVSTSSARREGRNSRGGVTFEESG-SLPFLSLAQF---------FLLNEDDDDQPRGL 563
Query: 314 TAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMISGEDAVCCICLAKYV 373
T E I+ L T F E L C +C+ +Y
Sbjct: 564 TKEQIDNLSTRNFG----------------ENDALK--------------TCSVCITEYT 593
Query: 374 DDDELRELICSHVFHVDCVDKWLKINASCPLCKSEI 409
+ ++LR+L CSH +HV C+D+WL N++CP+C+ +
Sbjct: 594 EGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAV 629
>sp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2
SV=3
Length = 323
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 5/94 (5%)
Query: 328 SKKNGNLNDQDNSGGTEGGVLAAGTEKERMISGEDAVCCICLAKYVDDDELREL-ICSHV 386
S + G L DN+ V A + KE I +D C ICL + D + +R L IC+H+
Sbjct: 90 SSRRGGL---DNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHL 146
Query: 387 FHVDCVDKWLKINASCPLCKSEI-GDSSSPLVQD 419
FH+DC+D WL +A+CP+C+S + S+ P +D
Sbjct: 147 FHIDCIDTWLYSHATCPVCRSNLTAKSNKPGDED 180
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 33/133 (24%)
Query: 280 YAMPFILCATICCCLPCIISVLGIREDYSQTRGAT--AETINALPTYKFKSKKNGNLNDQ 337
Y +PF++ IC L I + +D + R + + LP +KFK
Sbjct: 183 YLIPFLIIVGICLILIVIFMITKFVQDRHRNRRNRLRKDQLKKLPVHKFKK--------- 233
Query: 338 DNSGGTEGGVLAAGTEKERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWL- 396
G E + VC ICL +Y D D+LR L CSH +H CVD WL
Sbjct: 234 -------------GDEYD--------VCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLT 272
Query: 397 KINASCPLCKSEI 409
K +CP+CK ++
Sbjct: 273 KTKKTCPVCKQKV 285
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 33/133 (24%)
Query: 280 YAMPFILCATICCCLPCIISVLGIREDYSQTRGAT--AETINALPTYKFKSKKNGNLNDQ 337
Y +PF++ IC L I + +D + R + + LP +KFK
Sbjct: 183 YLIPFLIIVGICLILIVIFMITKFVQDRHRNRRNRLRKDQLKKLPVHKFKK--------- 233
Query: 338 DNSGGTEGGVLAAGTEKERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWL- 396
G E + VC ICL +Y D D+LR L CSH +H CVD WL
Sbjct: 234 -------------GDEYD--------VCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLT 272
Query: 397 KINASCPLCKSEI 409
K +CP+CK ++
Sbjct: 273 KTKKTCPVCKQKV 285
>sp|Q08D68|ZNRF3_XENTR E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus tropicalis GN=znrf3
PE=2 SV=1
Length = 853
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 69/151 (45%), Gaps = 22/151 (14%)
Query: 259 PSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDYSQTRGATAETI 318
P P Y +FL F F++ + +C L I + R S R A + +
Sbjct: 182 PPRQPTEYFDMGIFLAF--------FVVVSLVCLILLIKIKLKQRRSQNSMNRMAV-QAL 232
Query: 319 NALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMISGEDAVCCICLAKYVDDDEL 378
+ T KFK+K G + + + GG + + S + C ICL KY+D +EL
Sbjct: 233 EKMETRKFKAK--GKVPREGSCGGLD-----------TLSSSSTSDCAICLEKYIDGEEL 279
Query: 379 RELICSHVFHVDCVDKWLKINASCPLCKSEI 409
R + C+H FH CVD WL N +CP C+ I
Sbjct: 280 RVIPCTHRFHKRCVDPWLLQNHTCPHCRHNI 310
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 34/46 (73%)
Query: 364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEI 409
C +C+ +Y + ++LR+L CSH +HV C+D+WL N++CP+C+ +
Sbjct: 569 TCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAV 614
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 34/46 (73%)
Query: 364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEI 409
C +C+ +Y + ++LR+L CSH +HV C+D+WL N++CP+C+ +
Sbjct: 545 TCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAV 590
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 33/133 (24%)
Query: 280 YAMPFILCATICCCLPCIISVLGIREDYSQTRGAT--AETINALPTYKFKSKKNGNLNDQ 337
Y +PF++ IC L I + +D + R + + LP +KFK
Sbjct: 183 YLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKK--------- 233
Query: 338 DNSGGTEGGVLAAGTEKERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWL- 396
G E + VC ICL +Y D D+LR L CSH +H CVD WL
Sbjct: 234 -------------GDEYD--------VCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLT 272
Query: 397 KINASCPLCKSEI 409
K +CP+CK ++
Sbjct: 273 KTKKTCPVCKQKV 285
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 33/133 (24%)
Query: 280 YAMPFILCATICCCLPCIISVLGIREDYSQTRGAT--AETINALPTYKFKSKKNGNLNDQ 337
Y +PF++ IC L I + +D + R + + LP +KFK
Sbjct: 183 YLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKK--------- 233
Query: 338 DNSGGTEGGVLAAGTEKERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWL- 396
G E + VC ICL +Y D D+LR L CSH +H CVD WL
Sbjct: 234 -------------GDEYD--------VCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLT 272
Query: 397 KINASCPLCKSEI 409
K +CP+CK ++
Sbjct: 273 KTKKTCPVCKQKV 285
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 33/133 (24%)
Query: 280 YAMPFILCATICCCLPCIISVLGIREDYSQTRGAT--AETINALPTYKFKSKKNGNLNDQ 337
Y +PF++ IC L I + +D + R + + LP +KFK
Sbjct: 183 YLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKK--------- 233
Query: 338 DNSGGTEGGVLAAGTEKERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWL- 396
G E + VC ICL +Y D D+LR L CSH +H CVD WL
Sbjct: 234 -------------GDEYD--------VCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLT 272
Query: 397 KINASCPLCKSEI 409
K +CP+CK ++
Sbjct: 273 KTKKTCPVCKQKV 285
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 34/46 (73%)
Query: 364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEI 409
C +C+ +Y + ++LR+L CSH +H+ C+D+WL N++CP+C+ +
Sbjct: 567 TCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAV 612
>sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens GN=RNF38 PE=1 SV=4
Length = 515
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 27/111 (24%)
Query: 301 LGIREDYSQTRGATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMISG 360
L R ++ RG T I LP+Y+F N N+ +
Sbjct: 426 LAERLGEAKPRGLTKADIEQLPSYRF------NPNNHQS--------------------- 458
Query: 361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGD 411
E +C +C+ + LR L C+H FH CVDKWLK N +CP+C+++ +
Sbjct: 459 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASE 509
>sp|Q08CG8|RNF44_DANRE RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1
Length = 448
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 27/111 (24%)
Query: 301 LGIREDYSQTRGATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMISG 360
L R ++ RG T I LP+Y+F NL + +
Sbjct: 359 LAERLGEAKPRGLTKADIEQLPSYRF------NLENHQS--------------------- 391
Query: 361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGD 411
E +C +C + + LR L C+H FH CVDKWLK N +CP+C+++ +
Sbjct: 392 EQTLCVVCFSDFESRQLLRVLPCNHEFHAKCVDKWLKTNRTCPICRADASE 442
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 34/46 (73%)
Query: 364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEI 409
C +C+ +Y + ++LR+L CSH +H+ C+D+WL N++CP+C+ +
Sbjct: 702 TCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAV 747
>sp|Q8H7N9|ATL31_ORYSJ E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp.
japonica GN=Os03g0188200 PE=2 SV=1
Length = 353
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 351 GTEKERMISGEDAV-CCICLAKYVDDDELREL-ICSHVFHVDCVDKWLKINASCPLCKSE 408
G K RM + + C +CLA++ D DELR L C HVFH DC+D WL +CPLC++
Sbjct: 118 GDVKARMAAKSGPLECAVCLAEFADSDELRVLPACCHVFHPDCIDPWLAAAVTCPLCRAN 177
Query: 409 I 409
+
Sbjct: 178 L 178
>sp|Q9DBU5|RNF6_MOUSE E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1
Length = 667
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%), Gaps = 3/54 (5%)
Query: 364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKS---EIGDSSS 414
VC +C++ YV ++LR+L C H FH+ C+D+WL N +CP+C+ E G +SS
Sbjct: 613 VCSVCISDYVAGNKLRQLPCLHEFHIHCIDRWLSENCTCPVCRRPVLEFGATSS 666
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 33/47 (70%)
Query: 363 AVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEI 409
+C +C++ YV ++LR+L C H FH+ C+D+WL N +CP+C+ +
Sbjct: 630 KICSVCISDYVTGNKLRQLPCMHEFHIHCIDRWLSENCTCPICRQPV 676
>sp|Q9M2S6|SDIR1_ARATH E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1
PE=1 SV=1
Length = 273
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 14/125 (11%)
Query: 306 DYSQTRGATAETINALPTYKFK--SKKNG-NLNDQDNSGGTEGGVLAAGTEKERMISGED 362
D T + E INALP +K+K +NG +L Q ++ + +L + E ++ E
Sbjct: 150 DNVSTTSMSEEEINALPVHKYKVLDPENGCSLAKQASTSSSAEKMLDSANESKKGTEDE- 208
Query: 363 AVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCK----------SEIGDS 412
C +CL + + +R L C H FH C+D WL+ +CP+CK EI D
Sbjct: 209 LTCSVCLEQVTVGEIVRTLPCLHQFHAGCIDPWLRQQGTCPVCKFRAHSGWQEQDEIDDD 268
Query: 413 SSPLV 417
+S +V
Sbjct: 269 ASDMV 273
>sp|Q8BI21|RNF38_MOUSE RING finger protein 38 OS=Mus musculus GN=Rnf38 PE=2 SV=1
Length = 518
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 27/111 (24%)
Query: 301 LGIREDYSQTRGATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMISG 360
L R ++ RG T I LP+Y+F +
Sbjct: 429 LAERLGEAKPRGLTKADIEQLPSYRFNPSNH---------------------------QS 461
Query: 361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGD 411
E +C +C+ + LR L C+H FH CVDKWLK N +CP+C+++ +
Sbjct: 462 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKGNRTCPICRADASE 512
>sp|Q9LY41|ATL4_ARATH E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana GN=ATL4
PE=1 SV=1
Length = 334
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 29/110 (26%)
Query: 315 AETINALPTYKFKS--KKNGNLNDQDNSGGTEGGVLAAGTEKERMISGEDAVCCICLAKY 372
+ +++LP +KF S +++ ++N D C +CL+K+
Sbjct: 91 SSVLDSLPIFKFSSVTRRSSSMNSGD--------------------------CAVCLSKF 124
Query: 373 VDDDELREL-ICSHVFHVDCVDKWLKINASCPLCKSEIGDSSSPLVQDSA 421
+D+LR L +C H FH DC+D WL N +CPLC+S + S S L++ A
Sbjct: 125 EPEDQLRLLPLCCHAFHADCIDIWLVSNQTCPLCRSPLFASESDLMKSLA 174
>sp|Q9SLC3|ATL41_ARATH E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana GN=ATL41
PE=1 SV=1
Length = 236
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 27/100 (27%)
Query: 311 RGATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMISGEDAVCCICLA 370
RG I +LPT+ + G GV A+ TE C +CL+
Sbjct: 80 RGLNPTVIASLPTF---------------TVGATDGVAASATE-----------CAVCLS 113
Query: 371 KYVDDDELRELI-CSHVFHVDCVDKWLKINASCPLCKSEI 409
+ D+ REL C H+FHVDCVD WL ++CP+C++E+
Sbjct: 114 VLKEQDKARELPNCKHIFHVDCVDTWLTTCSTCPVCRTEV 153
>sp|A5WWA0|ZNRF3_DANRE E3 ubiquitin-protein ligase ZNRF3 OS=Danio rerio GN=znrf3 PE=3 SV=2
Length = 868
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 68/156 (43%), Gaps = 22/156 (14%)
Query: 256 HSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDYSQTRGATA 315
H P P Y +FL F F++ + +C L I + R S R A
Sbjct: 180 HRPPRVRPTEYFDMGIFLAF--------FVVVSLVCLILLIKIKLKQRRSQSSMNRMAI- 230
Query: 316 ETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMISGEDAVCCICLAKYVDD 375
+ + + T KFK+K G A+ + + S + C ICL KY+D
Sbjct: 231 QALEKMETCKFKAKFKGQRE-------------ASCGASDSVSSSSTSDCAICLEKYIDG 277
Query: 376 DELRELICSHVFHVDCVDKWLKINASCPLCKSEIGD 411
+ELR + C+H FH CVD WL + +CP C+ I D
Sbjct: 278 EELRVIPCAHRFHKKCVDPWLLQHHTCPHCRHNIID 313
>sp|O64763|ATL9_ARATH E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana GN=ATL9
PE=1 SV=1
Length = 378
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 25/100 (25%)
Query: 311 RGATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMISGEDAVCCICLA 370
RG AE I PT+ + K + GG E C +CL
Sbjct: 105 RGLDAEAIETFPTFLYSEVKAVRIG----KGGVE--------------------CAVCLC 140
Query: 371 KYVDDDELRELI-CSHVFHVDCVDKWLKINASCPLCKSEI 409
++ DD+ LR + C HVFH DCVD WL +++CPLC++++
Sbjct: 141 EFEDDETLRLMPPCCHVFHADCVDVWLSEHSTCPLCRADL 180
>sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1
Length = 432
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 27/111 (24%)
Query: 301 LGIREDYSQTRGATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMISG 360
L R ++ RG T I LP+Y+F +
Sbjct: 343 LAERLGDAKPRGLTKADIEQLPSYRFNPDSH---------------------------QS 375
Query: 361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGD 411
E +C +C + + LR L C+H FH CVDKWLK N +CP+C+++ +
Sbjct: 376 EQTLCVVCFSDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPICRADASE 426
>sp|Q9M0R5|ATL36_ARATH Putative RING-H2 finger protein ATL36 OS=Arabidopsis thaliana
GN=ATL36 PE=3 SV=1
Length = 345
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 31/133 (23%)
Query: 284 FILCATICCCLPCI-----ISVLGIREDYSQTR-GATAETINALPTYKFKSKKNGNLNDQ 337
FI + CCL CI I G +S+ R G E I + PT+ + K +
Sbjct: 60 FISLGMVSCCLHCIFYREEIGAAGQDVLHSRARRGLEKEVIESFPTFLYSEVKGLKIGK- 118
Query: 338 DNSGGTEGGVLAAGTEKERMISGEDAVCCICLAKYVDDDELRELI-CSHVFHVDCVDKWL 396
GG E C ICL+++ D + LR + CSH FH +C+D WL
Sbjct: 119 ---GGVE--------------------CAICLSEFEDQETLRWMPPCSHTFHANCIDVWL 155
Query: 397 KINASCPLCKSEI 409
++CP+C++ +
Sbjct: 156 SSWSTCPVCRANL 168
>sp|Q3UHJ8|RNF44_MOUSE RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1
Length = 407
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 27/111 (24%)
Query: 301 LGIREDYSQTRGATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMISG 360
L R ++ RG T I LP+Y+F +
Sbjct: 318 LAERLGDAKPRGLTKADIEQLPSYRFNPDSH---------------------------QS 350
Query: 361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGD 411
E +C +C + + LR L C+H FH CVDKWLK N +CP+C+++ +
Sbjct: 351 EQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASE 401
>sp|Q8L649|BB_ARATH E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1
SV=1
Length = 248
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 24/102 (23%)
Query: 308 SQTRGATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMISGEDAVCCI 367
+++RG + E I LPT K+K G + + ER C I
Sbjct: 164 TESRGLSQELIETLPTKKYKF----------------GSIFSRKRAGER--------CVI 199
Query: 368 CLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEI 409
C KY + L C HV+H +C+ KWL IN CP+C SE+
Sbjct: 200 CQLKYKIGERQMNLPCKHVYHSECISKWLSINKVCPVCNSEV 241
>sp|Q4V7B8|RNF44_RAT RING finger protein 44 OS=Rattus norvegicus GN=Rnf44 PE=2 SV=1
Length = 350
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 27/104 (25%)
Query: 308 SQTRGATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMISGEDAVCCI 367
++ RG T I LP+Y+F + E +C +
Sbjct: 268 AKPRGLTKADIEQLPSYRFNPDSH---------------------------QSEQTLCVV 300
Query: 368 CLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGD 411
C + + LR L C+H FH CVDKWLK N +CP+C+++ +
Sbjct: 301 CFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASE 344
>sp|Q84W40|ATL11_ARATH RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2
SV=2
Length = 404
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 25/102 (24%)
Query: 309 QTRGATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMISGEDAVCCIC 368
Q RG A I PT+++ T K I E C +C
Sbjct: 112 QARGLDASIIETFPTFQYS------------------------TVKTLRIGKEALECSVC 147
Query: 369 LAKYVDDDELREL-ICSHVFHVDCVDKWLKINASCPLCKSEI 409
L ++ DD+ LR + C HVFH C+D WL+ + +CPLC++++
Sbjct: 148 LNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTCPLCRADL 189
>sp|Q8GW38|ATL47_ARATH RING-H2 finger protein ATL47 OS=Arabidopsis thaliana GN=ATL47 PE=2
SV=1
Length = 369
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 354 KERMISGEDAVCCICLAKYVDDDELRELI-CSHVFHVDCVDKWLKINASCPLCKSEI 409
KE + E C +CL ++ +DD+LR L CSH FH+DC+D WL N++CPLC+ +
Sbjct: 133 KEIKGTKEPFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNSTCPLCRGTL 189
>sp|Q9M313|ATL68_ARATH RING-H2 finger protein ATL68 OS=Arabidopsis thaliana GN=ATL68 PE=2
SV=1
Length = 212
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 21/112 (18%)
Query: 312 GATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMISGEDAVCCICLAK 371
G IN+ P + F +N G G + C ICL +
Sbjct: 99 GLDHSVINSYPKFHFTKDITAVVNGDGFHDG----------------EGRETTCSICLCE 142
Query: 372 YVDDDELRELI-CSHVFHVDCVDKWLKINASCPLCKSEIGDSSSPLVQDSAQ 422
Y++++ LR + C H FHV C+D WLK+N SCP+C+ +S P Q + Q
Sbjct: 143 YMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCR----NSPLPTPQSTPQ 190
>sp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=2
SV=2
Length = 349
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 365 CCICLAKYVDDDELREL-ICSHVFHVDCVDKWLKINASCPLCKSEIGDSS 413
C +CL ++ D D+LR L +CSH FH+ C+D WL N++CPLC+ + S+
Sbjct: 207 CAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCRRSLSTSN 256
>sp|Q9C7E9|ATL20_ARATH RING-H2 finger protein ATL20 OS=Arabidopsis thaliana GN=ATL20 PE=2
SV=2
Length = 299
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 20/116 (17%)
Query: 312 GATAETINALPTY---KF--KSKKNGNLNDQDNSGGTEGGVLAAGT-------------- 352
G TA I A+ Y +F + ++N + ++ + G V+ G
Sbjct: 181 GITATCIAAIRIYNSERFVNQRRQNAAITARNTTQQPRGVVVTTGLDQSTIESYKKVELG 240
Query: 353 EKERMISGEDAVCCICLAKYVDDDELRELI-CSHVFHVDCVDKWLKINASCPLCKS 407
E R+ +C ICL++Y + +R + C H FHV C+D+WLKI++SCP+C++
Sbjct: 241 ESRRLPGTNGIICPICLSEYASKETVRCMPECDHCFHVQCIDEWLKIHSSCPVCRN 296
>sp|Q84TF5|RHA4A_ARATH RING-H2 zinc finger protein RHA4a OS=Arabidopsis thaliana GN=RHA4A
PE=2 SV=1
Length = 174
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Query: 362 DAVCCICLAKYVDDDELREL-ICSHVFHVDCVDKWLKINASCPLCKSEIGDSSS 414
D++CC+CL ++ +EL E+ +C H+FH+DC+ WL + +CPLC+S + SS+
Sbjct: 102 DSLCCVCLGEFELKEELVEMPLCKHIFHLDCIHLWLYSHNTCPLCRSSVSISST 155
>sp|Q9SKK8|ATL22_ARATH RING-H2 finger protein ATL22 OS=Arabidopsis thaliana GN=ATL22 PE=2
SV=2
Length = 377
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 353 EKERMISG-EDAVCCICLAKYVDDDELRELI-CSHVFHVDCVDKWLKINASCPLCKS 407
E R+ +G D VC ICL++Y + +R L C H FH +C+D WLK+++SCP+C+S
Sbjct: 314 ESRRLPTGSNDVVCPICLSEYATKETVRCLPECEHCFHTECIDAWLKLHSSCPVCRS 370
>sp|P0C041|ATL53_ARATH Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana
GN=ATL53 PE=3 SV=2
Length = 310
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 40/53 (75%), Gaps = 3/53 (5%)
Query: 358 ISGEDAVCCICLAKYVDDDELREL-ICSHVFHVDCVDKWLKINASCPLCKSEI 409
I+G D C ICL ++ +D+ LR L C+H FHV C+D+WLK +++CPLC+++I
Sbjct: 150 INGTD--CSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKI 200
>sp|P87119|MU145_SCHPO RING finger protein mug145 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=mug145 PE=1 SV=1
Length = 309
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 357 MISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWL-KINASCPLCKSE 408
++ E+ C IC A Y DD LR L C HVFH C+D W+ + ASCPLC +
Sbjct: 197 LLEDEEDFCIICYADYAFDDILRVLPCEHVFHTQCIDTWMTTMKASCPLCNED 249
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 163,801,131
Number of Sequences: 539616
Number of extensions: 7109495
Number of successful extensions: 24141
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 132
Number of HSP's that attempted gapping in prelim test: 23497
Number of HSP's gapped (non-prelim): 619
length of query: 423
length of database: 191,569,459
effective HSP length: 120
effective length of query: 303
effective length of database: 126,815,539
effective search space: 38425108317
effective search space used: 38425108317
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)