Query 037568
Match_columns 423
No_of_seqs 315 out of 2233
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 13:36:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037568.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037568hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.8 5.9E-20 1.3E-24 183.5 7.5 82 308-416 202-284 (348)
2 PF13639 zf-RING_2: Ring finge 99.5 2.6E-15 5.5E-20 107.7 2.7 43 364-406 2-44 (44)
3 COG5540 RING-finger-containing 99.4 1.1E-13 2.3E-18 134.6 5.4 52 360-411 321-373 (374)
4 COG5243 HRD1 HRD ubiquitin lig 99.3 2E-12 4.3E-17 128.6 7.5 57 356-412 281-347 (491)
5 PF12678 zf-rbx1: RING-H2 zinc 99.3 2.4E-12 5.1E-17 102.5 4.2 45 362-406 19-73 (73)
6 PHA02929 N1R/p28-like protein; 99.3 2.4E-12 5.2E-17 123.9 2.9 76 310-410 147-227 (238)
7 cd00162 RING RING-finger (Real 99.0 4.1E-10 8.9E-15 79.0 3.2 44 364-409 1-45 (45)
8 KOG0317 Predicted E3 ubiquitin 98.9 3.7E-10 8.1E-15 109.8 3.3 57 355-414 232-288 (293)
9 PF13920 zf-C3HC4_3: Zinc fing 98.9 7E-10 1.5E-14 81.6 2.8 46 362-410 2-48 (50)
10 KOG0802 E3 ubiquitin ligase [P 98.9 7.5E-10 1.6E-14 118.9 3.8 61 354-414 283-345 (543)
11 PLN03208 E3 ubiquitin-protein 98.9 9.9E-10 2.1E-14 102.2 3.9 50 360-412 16-81 (193)
12 PF13923 zf-C3HC4_2: Zinc fing 98.8 2.4E-09 5.2E-14 74.8 2.9 39 365-405 1-39 (39)
13 KOG0823 Predicted E3 ubiquitin 98.8 5.3E-09 1.1E-13 99.1 5.2 50 360-412 45-97 (230)
14 PF12861 zf-Apc11: Anaphase-pr 98.8 5E-09 1.1E-13 85.2 3.8 49 362-410 21-82 (85)
15 smart00184 RING Ring finger. E 98.7 1.6E-08 3.4E-13 68.4 3.1 38 365-405 1-39 (39)
16 PF14634 zf-RING_5: zinc-RING 98.6 1.8E-08 3.8E-13 72.3 2.7 44 364-407 1-44 (44)
17 PF00097 zf-C3HC4: Zinc finger 98.6 1.8E-08 3.8E-13 70.8 2.2 39 365-405 1-41 (41)
18 PHA02926 zinc finger-like prot 98.6 2.4E-08 5.3E-13 94.2 2.7 50 361-410 169-230 (242)
19 KOG1734 Predicted RING-contain 98.6 1.3E-08 2.8E-13 98.1 0.5 52 361-412 223-283 (328)
20 KOG0320 Predicted E3 ubiquitin 98.5 5.6E-08 1.2E-12 88.8 2.5 50 362-412 131-180 (187)
21 smart00744 RINGv The RING-vari 98.5 1.2E-07 2.6E-12 69.8 2.9 41 365-406 2-49 (49)
22 smart00504 Ubox Modified RING 98.4 1.5E-07 3.3E-12 71.8 3.5 46 364-412 3-48 (63)
23 PF15227 zf-C3HC4_4: zinc fing 98.4 1.4E-07 2.9E-12 67.2 2.5 38 365-405 1-42 (42)
24 COG5194 APC11 Component of SCF 98.4 1.7E-07 3.7E-12 74.7 3.3 46 364-409 22-80 (88)
25 KOG0828 Predicted E3 ubiquitin 98.4 1.2E-07 2.7E-12 97.7 2.8 49 363-411 572-635 (636)
26 KOG1493 Anaphase-promoting com 98.4 9.7E-08 2.1E-12 75.5 0.9 47 363-409 21-80 (84)
27 TIGR00599 rad18 DNA repair pro 98.4 1.9E-07 4.2E-12 96.2 2.7 49 361-412 25-73 (397)
28 KOG2930 SCF ubiquitin ligase, 98.2 4.5E-07 9.8E-12 75.7 1.5 46 363-408 47-106 (114)
29 COG5574 PEX10 RING-finger-cont 98.2 1E-06 2.3E-11 85.1 3.0 53 358-413 211-265 (271)
30 COG5219 Uncharacterized conser 98.2 5.1E-07 1.1E-11 98.9 0.8 49 360-410 1467-1523(1525)
31 PF11793 FANCL_C: FANCL C-term 98.1 6.8E-07 1.5E-11 70.6 -0.4 48 363-410 3-66 (70)
32 PF13445 zf-RING_UBOX: RING-ty 98.1 2.3E-06 5.1E-11 61.2 2.3 38 365-403 1-43 (43)
33 KOG4445 Uncharacterized conser 97.9 3.8E-06 8.3E-11 82.3 2.0 54 364-417 117-193 (368)
34 TIGR00570 cdk7 CDK-activating 97.9 8.3E-06 1.8E-10 81.3 3.0 52 362-413 3-57 (309)
35 KOG0804 Cytoplasmic Zn-finger 97.8 7.5E-06 1.6E-10 84.2 1.9 50 359-410 172-222 (493)
36 KOG0827 Predicted E3 ubiquitin 97.8 1.3E-05 2.8E-10 81.1 2.9 46 362-407 4-53 (465)
37 PF04564 U-box: U-box domain; 97.8 1.4E-05 2.9E-10 63.6 2.3 48 362-412 4-52 (73)
38 KOG2177 Predicted E3 ubiquitin 97.7 9.5E-06 2E-10 77.6 1.2 45 360-407 11-55 (386)
39 KOG0287 Postreplication repair 97.7 1E-05 2.2E-10 80.6 1.3 47 364-413 25-71 (442)
40 KOG0825 PHD Zn-finger protein 97.7 6.5E-06 1.4E-10 89.1 -0.5 49 363-411 124-172 (1134)
41 KOG4265 Predicted E3 ubiquitin 97.6 3.9E-05 8.5E-10 77.2 3.8 60 359-421 287-347 (349)
42 KOG2164 Predicted E3 ubiquitin 97.6 3.1E-05 6.8E-10 81.0 2.3 47 362-411 186-237 (513)
43 KOG1645 RING-finger-containing 97.5 5.7E-05 1.2E-09 77.0 3.2 47 363-409 5-55 (463)
44 KOG0824 Predicted E3 ubiquitin 97.4 7.7E-05 1.7E-09 73.5 1.7 48 362-412 7-55 (324)
45 KOG1039 Predicted E3 ubiquitin 97.4 8E-05 1.7E-09 75.7 1.9 51 360-410 159-221 (344)
46 COG5432 RAD18 RING-finger-cont 97.3 0.00012 2.6E-09 71.8 2.1 46 364-412 27-72 (391)
47 KOG1428 Inhibitor of type V ad 97.1 0.00036 7.9E-09 79.7 3.8 54 358-411 3482-3545(3738)
48 PF05883 Baculo_RING: Baculovi 97.0 0.00032 6.9E-09 62.0 1.8 35 362-396 26-66 (134)
49 KOG0311 Predicted E3 ubiquitin 97.0 0.00014 3.1E-09 73.0 -0.8 49 362-413 43-93 (381)
50 KOG1941 Acetylcholine receptor 96.9 0.00035 7.5E-09 71.0 0.8 45 363-407 366-413 (518)
51 KOG3970 Predicted E3 ubiquitin 96.8 0.001 2.2E-08 63.3 3.4 51 363-414 51-109 (299)
52 KOG4159 Predicted E3 ubiquitin 96.8 0.00066 1.4E-08 70.4 2.3 50 360-412 82-131 (398)
53 KOG4172 Predicted E3 ubiquitin 96.7 0.00047 1E-08 51.5 0.6 45 362-410 7-54 (62)
54 KOG0801 Predicted E3 ubiquitin 96.7 0.00061 1.3E-08 61.7 1.0 33 357-389 172-204 (205)
55 PHA02862 5L protein; Provision 96.4 0.0025 5.4E-08 56.9 2.9 43 363-409 3-52 (156)
56 PF12906 RINGv: RING-variant d 96.4 0.0021 4.5E-08 46.9 2.0 40 365-405 1-47 (47)
57 PHA02825 LAP/PHD finger-like p 96.1 0.0051 1.1E-07 55.8 3.3 46 360-409 6-58 (162)
58 PF14835 zf-RING_6: zf-RING of 96.1 0.0013 2.7E-08 51.0 -0.6 43 364-410 9-51 (65)
59 KOG1785 Tyrosine kinase negati 96.0 0.0024 5.2E-08 65.2 1.1 47 364-413 371-419 (563)
60 KOG0297 TNF receptor-associate 96.0 0.0021 4.6E-08 66.8 0.7 54 360-415 19-72 (391)
61 PF11789 zf-Nse: Zinc-finger o 95.8 0.004 8.7E-08 47.3 1.1 40 363-404 12-53 (57)
62 KOG1814 Predicted E3 ubiquitin 95.7 0.0056 1.2E-07 62.9 2.2 46 363-408 185-238 (445)
63 KOG0978 E3 ubiquitin ligase in 95.4 0.0049 1.1E-07 67.7 0.6 49 362-413 643-692 (698)
64 KOG1952 Transcription factor N 95.0 0.016 3.4E-07 64.4 2.9 51 358-408 187-245 (950)
65 KOG2879 Predicted E3 ubiquitin 94.9 0.035 7.5E-07 54.5 4.6 52 358-411 235-288 (298)
66 KOG0827 Predicted E3 ubiquitin 94.8 0.0021 4.5E-08 65.5 -4.0 51 364-414 198-249 (465)
67 KOG2660 Locus-specific chromos 94.7 0.011 2.3E-07 59.3 0.8 49 362-412 15-63 (331)
68 PF10367 Vps39_2: Vacuolar sor 94.7 0.012 2.5E-07 49.2 0.8 32 361-393 77-108 (109)
69 KOG3039 Uncharacterized conser 94.6 0.043 9.4E-07 53.1 4.4 56 361-416 220-276 (303)
70 COG5152 Uncharacterized conser 94.1 0.024 5.3E-07 53.1 1.5 43 364-409 198-240 (259)
71 KOG1002 Nucleotide excision re 93.9 0.026 5.7E-07 59.7 1.5 50 361-413 535-589 (791)
72 PF14570 zf-RING_4: RING/Ubox 93.9 0.03 6.5E-07 41.1 1.3 43 365-408 1-46 (48)
73 PHA03096 p28-like protein; Pro 93.8 0.029 6.3E-07 55.9 1.7 36 363-398 179-219 (284)
74 KOG1571 Predicted E3 ubiquitin 93.6 0.038 8.2E-07 56.2 1.9 43 363-411 306-348 (355)
75 KOG4739 Uncharacterized protei 93.3 0.032 6.9E-07 53.9 0.8 44 364-410 5-48 (233)
76 KOG1609 Protein involved in mR 92.6 0.096 2.1E-06 52.0 3.2 51 362-412 78-136 (323)
77 KOG4692 Predicted E3 ubiquitin 92.3 0.071 1.5E-06 54.1 1.8 48 360-410 420-467 (489)
78 KOG1813 Predicted E3 ubiquitin 92.1 0.05 1.1E-06 53.9 0.5 46 364-412 243-288 (313)
79 PF07800 DUF1644: Protein of u 92.0 0.15 3.2E-06 46.5 3.3 37 361-397 1-47 (162)
80 KOG0826 Predicted E3 ubiquitin 91.8 0.23 5E-06 50.0 4.7 49 358-409 296-345 (357)
81 COG5222 Uncharacterized conser 91.2 0.087 1.9E-06 52.3 1.0 47 363-412 275-324 (427)
82 KOG1940 Zn-finger protein [Gen 91.2 0.086 1.9E-06 52.3 1.0 43 365-407 161-204 (276)
83 KOG4185 Predicted E3 ubiquitin 90.8 0.16 3.4E-06 50.5 2.5 47 363-409 4-54 (296)
84 KOG2932 E3 ubiquitin ligase in 90.2 0.11 2.3E-06 52.0 0.6 43 364-410 92-134 (389)
85 PF08746 zf-RING-like: RING-li 89.9 0.12 2.6E-06 37.0 0.5 41 365-405 1-43 (43)
86 KOG3268 Predicted E3 ubiquitin 89.4 0.23 5.1E-06 46.0 2.1 49 364-412 167-230 (234)
87 PF04641 Rtf2: Rtf2 RING-finge 89.1 0.42 9.1E-06 47.0 3.9 54 362-416 113-167 (260)
88 KOG4275 Predicted E3 ubiquitin 89.1 0.067 1.5E-06 53.0 -1.7 43 362-411 300-343 (350)
89 PF14447 Prok-RING_4: Prokaryo 89.0 0.2 4.3E-06 37.7 1.2 45 364-413 9-53 (55)
90 COG5183 SSM4 Protein involved 87.2 0.38 8.2E-06 53.6 2.4 51 359-410 9-66 (1175)
91 KOG2034 Vacuolar sorting prote 87.1 0.29 6.3E-06 55.0 1.5 36 360-396 815-850 (911)
92 PF10272 Tmpp129: Putative tra 86.9 0.86 1.9E-05 47.0 4.6 27 383-409 311-350 (358)
93 KOG2114 Vacuolar assembly/sort 86.7 0.39 8.4E-06 53.8 2.2 42 363-409 841-882 (933)
94 KOG1001 Helicase-like transcri 86.2 0.32 6.9E-06 54.1 1.2 45 363-411 455-501 (674)
95 KOG3053 Uncharacterized conser 85.7 0.44 9.5E-06 46.6 1.7 48 362-409 20-81 (293)
96 COG5236 Uncharacterized conser 85.6 0.71 1.5E-05 46.9 3.2 47 360-409 59-107 (493)
97 KOG3161 Predicted E3 ubiquitin 85.6 0.27 5.8E-06 53.4 0.2 48 363-413 12-60 (861)
98 KOG0802 E3 ubiquitin ligase [P 85.3 0.64 1.4E-05 50.5 3.0 50 358-414 475-524 (543)
99 PF03854 zf-P11: P-11 zinc fin 83.1 0.66 1.4E-05 33.9 1.3 32 380-411 15-47 (50)
100 COG5220 TFB3 Cdk activating ki 83.1 0.71 1.5E-05 44.8 1.9 50 362-411 10-65 (314)
101 KOG0298 DEAD box-containing he 80.7 0.55 1.2E-05 54.8 0.3 47 362-410 1153-1199(1394)
102 KOG3800 Predicted E3 ubiquitin 80.6 1.2 2.6E-05 44.3 2.5 51 364-414 2-55 (300)
103 KOG0309 Conserved WD40 repeat- 79.7 2.7 5.9E-05 46.8 5.0 39 365-404 1031-1069(1081)
104 KOG3899 Uncharacterized conser 78.9 1.1 2.4E-05 44.6 1.7 27 383-409 325-364 (381)
105 KOG3002 Zn finger protein [Gen 78.3 1.2 2.7E-05 44.8 1.9 45 360-411 46-92 (299)
106 PF14446 Prok-RING_1: Prokaryo 77.9 2.7 5.8E-05 31.7 3.1 42 363-408 6-50 (54)
107 KOG3005 GIY-YIG type nuclease 77.6 1 2.3E-05 44.3 1.0 47 363-409 183-242 (276)
108 KOG4362 Transcriptional regula 77.4 0.64 1.4E-05 51.3 -0.5 51 362-415 21-74 (684)
109 KOG1100 Predicted E3 ubiquitin 75.8 1.6 3.4E-05 41.7 1.7 40 365-411 161-201 (207)
110 KOG0825 PHD Zn-finger protein 75.7 1.8 4E-05 48.3 2.4 50 362-411 96-155 (1134)
111 KOG1829 Uncharacterized conser 68.4 2.2 4.7E-05 46.6 0.9 40 363-405 512-556 (580)
112 COG5175 MOT2 Transcriptional r 68.3 3.3 7.2E-05 42.2 2.1 51 362-412 14-66 (480)
113 KOG4367 Predicted Zn-finger pr 64.3 3.6 7.7E-05 43.2 1.5 35 361-398 3-37 (699)
114 KOG1812 Predicted E3 ubiquitin 60.9 2.9 6.3E-05 43.6 0.1 37 362-398 146-183 (384)
115 PF05290 Baculo_IE-1: Baculovi 59.9 7.9 0.00017 34.5 2.6 53 363-415 81-137 (140)
116 KOG1815 Predicted E3 ubiquitin 59.7 4.6 0.0001 42.8 1.4 51 361-413 69-129 (444)
117 PF13901 DUF4206: Domain of un 57.2 5.6 0.00012 37.7 1.4 40 363-407 153-197 (202)
118 KOG2066 Vacuolar assembly/sort 56.7 3.9 8.4E-05 45.8 0.2 44 362-406 784-831 (846)
119 KOG2817 Predicted E3 ubiquitin 56.4 9.8 0.00021 39.6 3.1 47 364-410 336-385 (394)
120 PF02891 zf-MIZ: MIZ/SP-RING z 50.3 5.3 0.00011 29.4 0.0 40 364-408 4-50 (50)
121 smart00132 LIM Zinc-binding do 48.0 16 0.00034 24.0 2.1 37 365-410 2-38 (39)
122 KOG3842 Adaptor protein Pellin 47.5 14 0.00031 37.4 2.5 32 381-412 376-416 (429)
123 smart00249 PHD PHD zinc finger 47.0 8.3 0.00018 26.3 0.6 30 365-394 2-31 (47)
124 KOG0269 WD40 repeat-containing 42.7 18 0.00039 40.6 2.6 45 362-407 779-825 (839)
125 PF04710 Pellino: Pellino; In 41.7 8.6 0.00019 40.0 0.0 50 362-411 328-402 (416)
126 KOG4718 Non-SMC (structural ma 39.5 13 0.00027 35.7 0.7 41 363-405 182-222 (235)
127 KOG1812 Predicted E3 ubiquitin 36.3 17 0.00037 37.9 1.2 48 360-407 304-353 (384)
128 PF04423 Rad50_zn_hook: Rad50 35.1 11 0.00023 27.9 -0.4 14 399-412 20-33 (54)
129 KOG2041 WD40 repeat protein [G 33.4 38 0.00081 38.2 3.2 49 358-410 1127-1185(1189)
130 KOG1729 FYVE finger containing 32.8 8.7 0.00019 38.6 -1.6 37 364-400 216-252 (288)
131 PF07975 C1_4: TFIIH C1-like d 32.5 41 0.00088 25.1 2.3 41 365-406 2-50 (51)
132 PF05715 zf-piccolo: Piccolo Z 31.1 30 0.00064 26.6 1.4 16 399-414 2-17 (61)
133 PF10856 DUF2678: Protein of u 30.0 50 0.0011 28.8 2.8 47 116-164 37-84 (118)
134 KOG3039 Uncharacterized conser 29.5 47 0.001 32.7 2.8 31 363-396 44-74 (303)
135 PRK05978 hypothetical protein; 28.6 31 0.00066 31.3 1.3 25 384-413 42-66 (148)
136 PF14169 YdjO: Cold-inducible 28.2 29 0.00064 26.6 1.0 15 399-413 39-53 (59)
137 KOG2068 MOT2 transcription fac 28.1 40 0.00086 34.4 2.2 50 363-413 250-301 (327)
138 COG4700 Uncharacterized protei 27.3 72 0.0016 30.6 3.6 32 233-278 8-39 (251)
139 PF06844 DUF1244: Protein of u 27.1 37 0.00081 26.6 1.4 12 386-397 11-22 (68)
140 PF13717 zinc_ribbon_4: zinc-r 26.4 28 0.0006 23.8 0.5 26 363-388 3-36 (36)
141 PF00412 LIM: LIM domain; Int 25.8 53 0.0012 23.7 2.0 40 365-413 1-40 (58)
142 PRK11827 hypothetical protein; 25.6 23 0.0005 27.3 -0.0 20 393-412 2-21 (60)
143 PF05251 UPF0197: Uncharacteri 25.2 2.4E+02 0.0051 22.9 5.7 57 225-286 14-70 (77)
144 PF00628 PHD: PHD-finger; Int 24.8 21 0.00045 25.5 -0.4 43 365-407 2-50 (51)
145 KOG2927 Membrane component of 23.6 1.2E+02 0.0027 31.3 4.7 6 265-270 218-223 (372)
146 PF08372 PRT_C: Plant phosphor 23.5 2.6E+02 0.0056 25.6 6.4 64 227-290 55-122 (156)
147 PF13832 zf-HC5HC2H_2: PHD-zin 22.9 51 0.0011 27.5 1.6 30 363-394 56-87 (110)
148 PF06210 DUF1003: Protein of u 22.8 1.9E+02 0.004 24.8 5.0 22 233-254 6-27 (108)
149 PF06937 EURL: EURL protein; 22.7 91 0.002 31.1 3.4 39 365-403 33-74 (285)
150 KOG4452 Predicted membrane pro 22.1 3.4E+02 0.0075 21.5 5.8 17 233-249 24-40 (79)
151 PF05478 Prominin: Prominin; 21.9 1E+02 0.0022 35.4 4.2 30 265-294 89-118 (806)
152 cd00350 rubredoxin_like Rubred 21.8 62 0.0014 21.5 1.5 10 398-407 16-25 (33)
153 PF02326 YMF19: Plant ATP synt 21.7 49 0.0011 27.2 1.2 34 263-306 10-43 (86)
154 PF06906 DUF1272: Protein of u 21.3 1.5E+02 0.0033 22.6 3.6 45 365-412 8-54 (57)
155 PF07649 C1_3: C1-like domain; 20.8 46 0.001 21.4 0.7 28 365-392 3-30 (30)
156 PF11712 Vma12: Endoplasmic re 20.6 2.8E+02 0.0061 24.5 6.0 25 227-251 80-104 (142)
157 PF06638 Strabismus: Strabismu 20.6 1.1E+03 0.024 25.7 12.6 61 106-166 90-156 (505)
158 PF10571 UPF0547: Uncharacteri 20.0 53 0.0012 20.9 0.9 10 401-410 2-11 (26)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=5.9e-20 Score=183.54 Aligned_cols=82 Identities=34% Similarity=0.750 Sum_probs=68.7
Q ss_pred cccccccHHHhhcCCcEEecccCCCCCCCCCCCCCCCCCccccCcchhhhcCCCCceeeecccccccCCceEEeccCccc
Q 037568 308 SQTRGATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMISGEDAVCCICLAKYVDDDELRELICSHVF 387 (423)
Q Consensus 308 ~~~rgas~~~I~~LP~~ky~~~~~~~~~~~~~~~~~~gg~~~~~t~~er~ls~ed~eC~ICL~~y~dge~lr~LPC~H~F 387 (423)
.+.+++.++.++++|.++|+....++.. ..|+|||++|++||++|.|||+|.|
T Consensus 202 ~~~~r~~k~~l~~~p~~~f~~~~~~~~~---------------------------~~CaIClEdY~~GdklRiLPC~H~F 254 (348)
T KOG4628|consen 202 LRRNRLIKRLLKKLPVRTFTKGDDEDAT---------------------------DTCAICLEDYEKGDKLRILPCSHKF 254 (348)
T ss_pred hhhhhhHHHHHhhCCcEEeccccccCCC---------------------------ceEEEeecccccCCeeeEecCCCch
Confidence 3557889999999999999874322110 3599999999999999999999999
Q ss_pred cHHHHHHHHhcCCC-CcccccccCCCCCCC
Q 037568 388 HVDCVDKWLKINAS-CPLCKSEIGDSSSPL 416 (423)
Q Consensus 388 H~~CId~WL~~~~t-CPlCR~~I~~~~~~~ 416 (423)
|..|||+||..+.+ ||+||+++.++....
T Consensus 255 H~~CIDpWL~~~r~~CPvCK~di~~~~~~~ 284 (348)
T KOG4628|consen 255 HVNCIDPWLTQTRTFCPVCKRDIRTDSGSE 284 (348)
T ss_pred hhccchhhHhhcCccCCCCCCcCCCCCCCC
Confidence 99999999987754 999999998876554
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.54 E-value=2.6e-15 Score=107.72 Aligned_cols=43 Identities=47% Similarity=1.164 Sum_probs=40.7
Q ss_pred eeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccc
Q 037568 364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCK 406 (423)
Q Consensus 364 eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR 406 (423)
+|+||+++|.+++.+..|+|+|.||.+||.+|++.+.+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 5999999999999999999999999999999999999999997
No 3
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.1e-13 Score=134.55 Aligned_cols=52 Identities=42% Similarity=1.061 Sum_probs=48.0
Q ss_pred CCCceeeecccccccCCceEEeccCccccHHHHHHHHh-cCCCCcccccccCC
Q 037568 360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLK-INASCPLCKSEIGD 411 (423)
Q Consensus 360 ~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~-~~~tCPlCR~~I~~ 411 (423)
....+|+|||++|-.+|+++.|||+|.||..||++|+. .+..||+||.+|++
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 34478999999999999999999999999999999997 78899999999976
No 4
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2e-12 Score=128.65 Aligned_cols=57 Identities=26% Similarity=0.836 Sum_probs=47.2
Q ss_pred hhcCCCCceeeecccc-cccCC---------ceEEeccCccccHHHHHHHHhcCCCCcccccccCCC
Q 037568 356 RMISGEDAVCCICLAK-YVDDD---------ELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDS 412 (423)
Q Consensus 356 r~ls~ed~eC~ICL~~-y~dge---------~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 412 (423)
+.+..+|..|.||+++ |+.+. +-+.|||+|+||.+|++.|++++.+||+||.++.-+
T Consensus 281 eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ifd 347 (491)
T COG5243 281 EQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIFD 347 (491)
T ss_pred hhhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccccc
Confidence 3455668889999999 55442 347999999999999999999999999999995443
No 5
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.29 E-value=2.4e-12 Score=102.53 Aligned_cols=45 Identities=40% Similarity=0.970 Sum_probs=36.4
Q ss_pred Cceeeeccccccc----------CCceEEeccCccccHHHHHHHHhcCCCCcccc
Q 037568 362 DAVCCICLAKYVD----------DDELRELICSHVFHVDCVDKWLKINASCPLCK 406 (423)
Q Consensus 362 d~eC~ICL~~y~d----------ge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR 406 (423)
+..|+||++.|.+ +-.+...+|+|.||..||.+||+.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 3459999999943 23456668999999999999999999999997
No 6
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.25 E-value=2.4e-12 Score=123.86 Aligned_cols=76 Identities=26% Similarity=0.597 Sum_probs=55.5
Q ss_pred cccccHHHhhcCCcEEecccCCCCCCCCCCCCCCCCCccccCcchhhhcCCCCceeeecccccccCCc----eEEe-ccC
Q 037568 310 TRGATAETINALPTYKFKSKKNGNLNDQDNSGGTEGGVLAAGTEKERMISGEDAVCCICLAKYVDDDE----LREL-ICS 384 (423)
Q Consensus 310 ~rgas~~~I~~LP~~ky~~~~~~~~~~~~~~~~~~gg~~~~~t~~er~ls~ed~eC~ICL~~y~dge~----lr~L-PC~ 384 (423)
.++.++..++.||.+...-.... ....+.+|+||++.+.+++. +..+ +|+
T Consensus 147 k~~~~~~~i~~lp~vl~~~e~~~-------------------------~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~ 201 (238)
T PHA02929 147 KGKNYKKFLKTIPSVLSEYEKLY-------------------------NRSKDKECAICMEKVYDKEIKNMYFGILSNCN 201 (238)
T ss_pred hcchhHHHHHhcchhhhhhhhhh-------------------------cCCCCCCCccCCcccccCccccccceecCCCC
Confidence 45667888888888754321110 01124679999999876541 2344 699
Q ss_pred ccccHHHHHHHHhcCCCCcccccccC
Q 037568 385 HVFHVDCVDKWLKINASCPLCKSEIG 410 (423)
Q Consensus 385 H~FH~~CId~WL~~~~tCPlCR~~I~ 410 (423)
|.||.+||.+|++.+.+||+||..+.
T Consensus 202 H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 202 HVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CcccHHHHHHHHhcCCCCCCCCCEee
Confidence 99999999999999999999999875
No 7
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.96 E-value=4.1e-10 Score=78.99 Aligned_cols=44 Identities=45% Similarity=1.093 Sum_probs=37.3
Q ss_pred eeeecccccccCCceEEeccCccccHHHHHHHHhc-CCCCccccccc
Q 037568 364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI-NASCPLCKSEI 409 (423)
Q Consensus 364 eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I 409 (423)
+|+||++.+ .+.+..++|+|.||..|+++|++. +..||+||..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 499999998 344556669999999999999987 78899999864
No 8
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=3.7e-10 Score=109.79 Aligned_cols=57 Identities=26% Similarity=0.652 Sum_probs=49.7
Q ss_pred hhhcCCCCceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCCCCC
Q 037568 355 ERMISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSSS 414 (423)
Q Consensus 355 er~ls~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~ 414 (423)
+..+.+.+..|.|||+.-++. ..+||||+|++.||-.|+..++.||+||....++.-
T Consensus 232 ~~~i~~a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 232 LSSIPEATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKV 288 (293)
T ss_pred CccCCCCCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHccccCCCcccccCCCcce
Confidence 344666778899999998777 689999999999999999999999999999877653
No 9
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.91 E-value=7e-10 Score=81.64 Aligned_cols=46 Identities=35% Similarity=0.828 Sum_probs=39.6
Q ss_pred CceeeecccccccCCceEEeccCcc-ccHHHHHHHHhcCCCCcccccccC
Q 037568 362 DAVCCICLAKYVDDDELRELICSHV-FHVDCVDKWLKINASCPLCKSEIG 410 (423)
Q Consensus 362 d~eC~ICL~~y~dge~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~I~ 410 (423)
+.+|.||++...+ +..+||+|. |+..|+.+|++.+..||+||++|.
T Consensus 2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4579999998654 588899999 999999999999999999999885
No 10
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=7.5e-10 Score=118.93 Aligned_cols=61 Identities=30% Similarity=0.750 Sum_probs=52.4
Q ss_pred hhhhcCCCCceeeecccccccCCc--eEEeccCccccHHHHHHHHhcCCCCcccccccCCCCC
Q 037568 354 KERMISGEDAVCCICLAKYVDDDE--LRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSSS 414 (423)
Q Consensus 354 ~er~ls~ed~eC~ICL~~y~dge~--lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~ 414 (423)
.++.+...+..|.||++++..++. .+.|||+|.||..|+.+||++..+||.||..+.....
T Consensus 283 ~~~~~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~~~~ 345 (543)
T KOG0802|consen 283 EERGLALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYDYVL 345 (543)
T ss_pred HHhhhhhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhcccc
Confidence 444566678899999999999876 7899999999999999999999999999996655543
No 11
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.89 E-value=9.9e-10 Score=102.19 Aligned_cols=50 Identities=36% Similarity=0.878 Sum_probs=42.0
Q ss_pred CCCceeeecccccccCCceEEeccCccccHHHHHHHHhc----------------CCCCcccccccCCC
Q 037568 360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI----------------NASCPLCKSEIGDS 412 (423)
Q Consensus 360 ~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~----------------~~tCPlCR~~I~~~ 412 (423)
+++.+|.||++.+++. ..++|+|.||..||.+|+.. ..+||+||.+|...
T Consensus 16 ~~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 16 GGDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred CCccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 3567899999998776 66899999999999999852 35799999999654
No 12
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.82 E-value=2.4e-09 Score=74.80 Aligned_cols=39 Identities=38% Similarity=0.964 Sum_probs=33.9
Q ss_pred eeecccccccCCceEEeccCccccHHHHHHHHhcCCCCccc
Q 037568 365 CCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLC 405 (423)
Q Consensus 365 C~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlC 405 (423)
|.||++.+.+ .+..++|+|.|+.+||.+|++.+.+||+|
T Consensus 1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 8899999887 45788999999999999999999999998
No 13
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=5.3e-09 Score=99.15 Aligned_cols=50 Identities=34% Similarity=0.767 Sum_probs=41.8
Q ss_pred CCCceeeecccccccCCceEEeccCccccHHHHHHHHhc---CCCCcccccccCCC
Q 037568 360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI---NASCPLCKSEIGDS 412 (423)
Q Consensus 360 ~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~---~~tCPlCR~~I~~~ 412 (423)
...-+|.|||+.-+|. .+..|+|+|++.||.+||.. +..||+||..|..+
T Consensus 45 ~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~ 97 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID 97 (230)
T ss_pred CCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCccccccccc
Confidence 3456799999997776 67779999999999999975 35689999998664
No 14
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.78 E-value=5e-09 Score=85.22 Aligned_cols=49 Identities=39% Similarity=0.870 Sum_probs=38.3
Q ss_pred Cceeeecccccc--------cCCc--eEEeccCccccHHHHHHHHhc---CCCCcccccccC
Q 037568 362 DAVCCICLAKYV--------DDDE--LRELICSHVFHVDCVDKWLKI---NASCPLCKSEIG 410 (423)
Q Consensus 362 d~eC~ICL~~y~--------dge~--lr~LPC~H~FH~~CId~WL~~---~~tCPlCR~~I~ 410 (423)
|..|.||...|+ .|+. +..-.|+|.||..||.+||.. +.+||+||++..
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 567999999997 2333 333359999999999999974 578999998753
No 15
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.67 E-value=1.6e-08 Score=68.37 Aligned_cols=38 Identities=45% Similarity=1.038 Sum_probs=33.4
Q ss_pred eeecccccccCCceEEeccCccccHHHHHHHHh-cCCCCccc
Q 037568 365 CCICLAKYVDDDELRELICSHVFHVDCVDKWLK-INASCPLC 405 (423)
Q Consensus 365 C~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~-~~~tCPlC 405 (423)
|.||++. ......+||+|.||..|+++|++ .+..||+|
T Consensus 1 C~iC~~~---~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE---LKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccC---CCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 7899988 44568899999999999999998 67789998
No 16
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.64 E-value=1.8e-08 Score=72.33 Aligned_cols=44 Identities=32% Similarity=0.839 Sum_probs=39.7
Q ss_pred eeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCccccc
Q 037568 364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKS 407 (423)
Q Consensus 364 eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~ 407 (423)
+|.||+++|.+....+.|+|+|.|+..|+.++......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 39999999977778899999999999999999977889999985
No 17
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.62 E-value=1.8e-08 Score=70.78 Aligned_cols=39 Identities=46% Similarity=1.024 Sum_probs=34.7
Q ss_pred eeecccccccCCceEEeccCccccHHHHHHHHh--cCCCCccc
Q 037568 365 CCICLAKYVDDDELRELICSHVFHVDCVDKWLK--INASCPLC 405 (423)
Q Consensus 365 C~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~--~~~tCPlC 405 (423)
|.||++.+.+.. +.++|+|.|+..||.+|++ ....||+|
T Consensus 1 C~iC~~~~~~~~--~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999988874 6889999999999999998 56679998
No 18
>PHA02926 zinc finger-like protein; Provisional
Probab=98.58 E-value=2.4e-08 Score=94.21 Aligned_cols=50 Identities=26% Similarity=0.829 Sum_probs=37.6
Q ss_pred CCceeeecccccccC----C-ceEEe-ccCccccHHHHHHHHhcC------CCCcccccccC
Q 037568 361 EDAVCCICLAKYVDD----D-ELREL-ICSHVFHVDCVDKWLKIN------ASCPLCKSEIG 410 (423)
Q Consensus 361 ed~eC~ICL~~y~dg----e-~lr~L-PC~H~FH~~CId~WL~~~------~tCPlCR~~I~ 410 (423)
++.+|+|||+..-+. + .-..| +|+|.||..||++|-+.+ .+||+||....
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 457899999986432 1 12345 599999999999999753 45999998754
No 19
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.3e-08 Score=98.09 Aligned_cols=52 Identities=31% Similarity=0.724 Sum_probs=44.5
Q ss_pred CCceeeecccccccCC-------ceEEeccCccccHHHHHHHH--hcCCCCcccccccCCC
Q 037568 361 EDAVCCICLAKYVDDD-------ELRELICSHVFHVDCVDKWL--KINASCPLCKSEIGDS 412 (423)
Q Consensus 361 ed~eC~ICL~~y~dge-------~lr~LPC~H~FH~~CId~WL--~~~~tCPlCR~~I~~~ 412 (423)
+|..|+||-..+.+.+ +..+|.|+|.||..||..|. ..+.+||.||..|.-.
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 4677999999887665 67899999999999999997 5678999999988654
No 20
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=5.6e-08 Score=88.77 Aligned_cols=50 Identities=30% Similarity=0.644 Sum_probs=42.6
Q ss_pred CceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCCC
Q 037568 362 DAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDS 412 (423)
Q Consensus 362 d~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 412 (423)
...|.|||+.|+.... ....|||+|+++||+.-|+....||+|++.|.+.
T Consensus 131 ~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred ccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 3679999999987644 3467999999999999999999999999977653
No 21
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.45 E-value=1.2e-07 Score=69.80 Aligned_cols=41 Identities=29% Similarity=0.821 Sum_probs=33.3
Q ss_pred eeecccccccCCceEEeccC-----ccccHHHHHHHHhc--CCCCcccc
Q 037568 365 CCICLAKYVDDDELRELICS-----HVFHVDCVDKWLKI--NASCPLCK 406 (423)
Q Consensus 365 C~ICL~~y~dge~lr~LPC~-----H~FH~~CId~WL~~--~~tCPlCR 406 (423)
|-||++ +.+++....+||. |++|..|+++|+.. +.+||+|+
T Consensus 2 CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 2 CRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred ccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 899999 4445555688985 99999999999954 45899996
No 22
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.44 E-value=1.5e-07 Score=71.79 Aligned_cols=46 Identities=20% Similarity=0.392 Sum_probs=41.2
Q ss_pred eeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCCC
Q 037568 364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDS 412 (423)
Q Consensus 364 eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 412 (423)
.|+||++-+++. ..+||+|.|...||.+|++.+.+||+|+..+...
T Consensus 3 ~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~ 48 (63)
T smart00504 3 LCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHE 48 (63)
T ss_pred CCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChh
Confidence 599999999986 5679999999999999999899999999988543
No 23
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.42 E-value=1.4e-07 Score=67.25 Aligned_cols=38 Identities=39% Similarity=0.861 Sum_probs=30.3
Q ss_pred eeecccccccCCceEEeccCccccHHHHHHHHhcC----CCCccc
Q 037568 365 CCICLAKYVDDDELRELICSHVFHVDCVDKWLKIN----ASCPLC 405 (423)
Q Consensus 365 C~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~----~tCPlC 405 (423)
|+||++-|.+. ..|+|+|.|...||.+|.+.. ..||+|
T Consensus 1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999998 789999999999999999653 469998
No 24
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.42 E-value=1.7e-07 Score=74.72 Aligned_cols=46 Identities=35% Similarity=0.876 Sum_probs=36.1
Q ss_pred eeeecccccc-----------cCCceEEe--ccCccccHHHHHHHHhcCCCCccccccc
Q 037568 364 VCCICLAKYV-----------DDDELREL--ICSHVFHVDCVDKWLKINASCPLCKSEI 409 (423)
Q Consensus 364 eC~ICL~~y~-----------dge~lr~L--PC~H~FH~~CId~WL~~~~tCPlCR~~I 409 (423)
.|+||..-|. .+++.... -|+|.||..||.+||+.+..||+||+..
T Consensus 22 ~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w 80 (88)
T COG5194 22 VCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTW 80 (88)
T ss_pred hhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCcee
Confidence 3666665553 46665444 4999999999999999999999999864
No 25
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.2e-07 Score=97.72 Aligned_cols=49 Identities=24% Similarity=0.727 Sum_probs=39.0
Q ss_pred ceeeeccccccc---CCc-----------eEEeccCccccHHHHHHHHh-cCCCCcccccccCC
Q 037568 363 AVCCICLAKYVD---DDE-----------LRELICSHVFHVDCVDKWLK-INASCPLCKSEIGD 411 (423)
Q Consensus 363 ~eC~ICL~~y~d---ge~-----------lr~LPC~H~FH~~CId~WL~-~~~tCPlCR~~I~~ 411 (423)
..|+||+.+..- +.. ....||+|+||..|+..|+. .+-.||+||.++.+
T Consensus 572 ~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 572 NDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 459999998752 111 23459999999999999998 67799999998864
No 26
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=9.7e-08 Score=75.53 Aligned_cols=47 Identities=32% Similarity=0.880 Sum_probs=36.4
Q ss_pred ceeeeccccccc--------CCceEEe--ccCccccHHHHHHHHhc---CCCCccccccc
Q 037568 363 AVCCICLAKYVD--------DDELREL--ICSHVFHVDCVDKWLKI---NASCPLCKSEI 409 (423)
Q Consensus 363 ~eC~ICL~~y~d--------ge~lr~L--PC~H~FH~~CId~WL~~---~~tCPlCR~~I 409 (423)
.+|-||...|+- ||..-.+ -|.|.||..||.+||.. ++.||+||+..
T Consensus 21 e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 21 ETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred CccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 469999999973 4433222 49999999999999954 56799999864
No 27
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.35 E-value=1.9e-07 Score=96.16 Aligned_cols=49 Identities=31% Similarity=0.604 Sum_probs=43.1
Q ss_pred CCceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCCC
Q 037568 361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDS 412 (423)
Q Consensus 361 ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 412 (423)
....|.||++.|.+. ..+||+|.||..||..|+.....||+||..+...
T Consensus 25 ~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 25 TSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQES 73 (397)
T ss_pred cccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence 456799999999776 4689999999999999999888999999998754
No 28
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=4.5e-07 Score=75.71 Aligned_cols=46 Identities=35% Similarity=0.891 Sum_probs=35.7
Q ss_pred ceeeecccccc------------cCCceEEe--ccCccccHHHHHHHHhcCCCCcccccc
Q 037568 363 AVCCICLAKYV------------DDDELREL--ICSHVFHVDCVDKWLKINASCPLCKSE 408 (423)
Q Consensus 363 ~eC~ICL~~y~------------dge~lr~L--PC~H~FH~~CId~WL~~~~tCPlCR~~ 408 (423)
..|+||..-+- ..++.... -|+|.||-.||.+||+.+..||||.++
T Consensus 47 DnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 47 DNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred chhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 45999875542 23344443 499999999999999999999999775
No 29
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=1e-06 Score=85.07 Aligned_cols=53 Identities=28% Similarity=0.637 Sum_probs=45.1
Q ss_pred cCCCCceeeecccccccCCceEEeccCccccHHHHHH-HHhcCCC-CcccccccCCCC
Q 037568 358 ISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDK-WLKINAS-CPLCKSEIGDSS 413 (423)
Q Consensus 358 ls~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~-WL~~~~t-CPlCR~~I~~~~ 413 (423)
+...|.+|.||++..++. ..+||+|+|+..||-. |-+.+.. ||+||+.+.+..
T Consensus 211 ip~~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 211 IPLADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccccccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 445688999999987776 7899999999999999 9988777 999999876653
No 30
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.16 E-value=5.1e-07 Score=98.93 Aligned_cols=49 Identities=39% Similarity=0.863 Sum_probs=38.5
Q ss_pred CCCceeeecccccccCCceEEec------cCccccHHHHHHHHhc--CCCCcccccccC
Q 037568 360 GEDAVCCICLAKYVDDDELRELI------CSHVFHVDCVDKWLKI--NASCPLCKSEIG 410 (423)
Q Consensus 360 ~ed~eC~ICL~~y~dge~lr~LP------C~H~FH~~CId~WL~~--~~tCPlCR~~I~ 410 (423)
.+-.||+||..-..--| |.|| |+|.||..|+.||++. +.+||+||.+|.
T Consensus 1467 sG~eECaICYsvL~~vd--r~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVD--RSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHh--ccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 44568999998876222 4443 8999999999999986 568999998774
No 31
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.06 E-value=6.8e-07 Score=70.64 Aligned_cols=48 Identities=33% Similarity=0.846 Sum_probs=23.7
Q ss_pred ceeeecccccccCCceEEe-----ccCccccHHHHHHHHhc-----------CCCCcccccccC
Q 037568 363 AVCCICLAKYVDDDELREL-----ICSHVFHVDCVDKWLKI-----------NASCPLCKSEIG 410 (423)
Q Consensus 363 ~eC~ICL~~y~dge~lr~L-----PC~H~FH~~CId~WL~~-----------~~tCPlCR~~I~ 410 (423)
.+|.||.+...+++++-.+ .|++.||..|+.+||.. ..+||.|+.+|.
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 4699999987744433222 38999999999999942 136999999874
No 32
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.06 E-value=2.3e-06 Score=61.25 Aligned_cols=38 Identities=37% Similarity=0.800 Sum_probs=23.3
Q ss_pred eeecccccccCCc-eEEeccCccccHHHHHHHHhcC----CCCc
Q 037568 365 CCICLAKYVDDDE-LRELICSHVFHVDCVDKWLKIN----ASCP 403 (423)
Q Consensus 365 C~ICL~~y~dge~-lr~LPC~H~FH~~CId~WL~~~----~tCP 403 (423)
|.||.+ |.+.+. -+.|||+|.|..+||+++++.+ -.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 866543 4789999999999999999854 3576
No 33
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.94 E-value=3.8e-06 Score=82.35 Aligned_cols=54 Identities=28% Similarity=0.752 Sum_probs=46.2
Q ss_pred eeeecccccccCCceEEeccCccccHHHHHHHHh-----------------------cCCCCcccccccCCCCCCCC
Q 037568 364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLK-----------------------INASCPLCKSEIGDSSSPLV 417 (423)
Q Consensus 364 eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~-----------------------~~~tCPlCR~~I~~~~~~~~ 417 (423)
.|.|||--|.+++...+++|-|+||..|+...|. ..+.||+||..|......++
T Consensus 117 qCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~slk 193 (368)
T KOG4445|consen 117 QCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEENSLK 193 (368)
T ss_pred ceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccccccee
Confidence 4999999999999999999999999999987761 13579999999987766654
No 34
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.86 E-value=8.3e-06 Score=81.29 Aligned_cols=52 Identities=27% Similarity=0.629 Sum_probs=39.4
Q ss_pred Cceeeecccc-cccCC-ceEEeccCccccHHHHHHHH-hcCCCCcccccccCCCC
Q 037568 362 DAVCCICLAK-YVDDD-ELRELICSHVFHVDCVDKWL-KINASCPLCKSEIGDSS 413 (423)
Q Consensus 362 d~eC~ICL~~-y~dge-~lr~LPC~H~FH~~CId~WL-~~~~tCPlCR~~I~~~~ 413 (423)
+..|+||..+ |-..+ ++..-+|+|.|+..||+..+ .....||.|+..+.+..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 4569999997 44443 22333899999999999966 45668999999887765
No 35
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.82 E-value=7.5e-06 Score=84.15 Aligned_cols=50 Identities=30% Similarity=0.811 Sum_probs=41.3
Q ss_pred CCCCceeeecccccccCC-ceEEeccCccccHHHHHHHHhcCCCCcccccccC
Q 037568 359 SGEDAVCCICLAKYVDDD-ELRELICSHVFHVDCVDKWLKINASCPLCKSEIG 410 (423)
Q Consensus 359 s~ed~eC~ICL~~y~dge-~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~ 410 (423)
..|-.+|++||+.+.+.. -++...|+|-||..|+.+|- ..+||+||+-..
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcC
Confidence 346678999999987764 46677899999999999996 468999998766
No 36
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=1.3e-05 Score=81.05 Aligned_cols=46 Identities=37% Similarity=0.949 Sum_probs=35.9
Q ss_pred CceeeecccccccCCceEEec-cCccccHHHHHHHHhc---CCCCccccc
Q 037568 362 DAVCCICLAKYVDDDELRELI-CSHVFHVDCVDKWLKI---NASCPLCKS 407 (423)
Q Consensus 362 d~eC~ICL~~y~dge~lr~LP-C~H~FH~~CId~WL~~---~~tCPlCR~ 407 (423)
.++|.||-+-+-..+++..+- |+|+||..|+.+|+.. +.+||.||-
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~i 53 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQI 53 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceee
Confidence 478999944444445666665 9999999999999965 468999993
No 37
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.77 E-value=1.4e-05 Score=63.57 Aligned_cols=48 Identities=19% Similarity=0.431 Sum_probs=38.7
Q ss_pred CceeeecccccccCCceEEeccCccccHHHHHHHHhc-CCCCcccccccCCC
Q 037568 362 DAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI-NASCPLCKSEIGDS 412 (423)
Q Consensus 362 d~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~ 412 (423)
.-.|.||.+-+.+. ..+||+|.|-+.||.+||+. +.+||+|+.++...
T Consensus 4 ~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 4 EFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred ccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 45699999999998 68899999999999999998 89999999988764
No 38
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=9.5e-06 Score=77.55 Aligned_cols=45 Identities=31% Similarity=0.704 Sum_probs=40.4
Q ss_pred CCCceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCccccc
Q 037568 360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKS 407 (423)
Q Consensus 360 ~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~ 407 (423)
.+...|.||++.|.+. +.|||+|.|+..||..+......||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 3557799999999999 89999999999999999986678999993
No 39
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.74 E-value=1e-05 Score=80.60 Aligned_cols=47 Identities=30% Similarity=0.653 Sum_probs=43.1
Q ss_pred eeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCCCC
Q 037568 364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSS 413 (423)
Q Consensus 364 eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 413 (423)
.|-||.+-|... ..+||+|.|+.-||.+.|..+..||+|+.++.++.
T Consensus 25 RC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~ 71 (442)
T KOG0287|consen 25 RCGICFEYFNIP---MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESD 71 (442)
T ss_pred HHhHHHHHhcCc---eeccccchHHHHHHHHHhccCCCCCceecccchhh
Confidence 499999999988 78899999999999999999999999999887653
No 40
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.71 E-value=6.5e-06 Score=89.08 Aligned_cols=49 Identities=31% Similarity=0.642 Sum_probs=44.7
Q ss_pred ceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCC
Q 037568 363 AVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGD 411 (423)
Q Consensus 363 ~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 411 (423)
..|.|||..+.++......+|.|+||..||+.|-+.-.+||+||....+
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 4599999999999888888999999999999999999999999986543
No 41
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=3.9e-05 Score=77.20 Aligned_cols=60 Identities=25% Similarity=0.534 Sum_probs=47.0
Q ss_pred CCCCceeeecccccccCCceEEeccCcc-ccHHHHHHHHhcCCCCcccccccCCCCCCCCCCCC
Q 037568 359 SGEDAVCCICLAKYVDDDELRELICSHV-FHVDCVDKWLKINASCPLCKSEIGDSSSPLVQDSA 421 (423)
Q Consensus 359 s~ed~eC~ICL~~y~dge~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~I~~~~~~~~~~~~ 421 (423)
+++..+|.|||++-.|- ..|||.|. .+..|.+.---+...||+||++|....+...+.+.
T Consensus 287 ~~~gkeCVIClse~rdt---~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~~~~~ 347 (349)
T KOG4265|consen 287 SESGKECVICLSESRDT---VVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYVNKED 347 (349)
T ss_pred ccCCCeeEEEecCCcce---EEecchhhehhHhHHHHHHHhhcCCCccccchHhhheecccccc
Confidence 34456899999986664 79999996 68889888655678899999999887776655543
No 42
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=3.1e-05 Score=81.00 Aligned_cols=47 Identities=32% Similarity=0.658 Sum_probs=38.3
Q ss_pred CceeeecccccccCCceEEeccCccccHHHHHHHHhc-----CCCCcccccccCC
Q 037568 362 DAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI-----NASCPLCKSEIGD 411 (423)
Q Consensus 362 d~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~-----~~tCPlCR~~I~~ 411 (423)
+..|+|||+...... .+-|||+|+..||-..+.. -..||+|+..|..
T Consensus 186 ~~~CPICL~~~~~p~---~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPV---RTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCccc---ccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 788999999876662 3349999999999998854 3579999998866
No 43
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=5.7e-05 Score=77.04 Aligned_cols=47 Identities=36% Similarity=0.977 Sum_probs=37.5
Q ss_pred ceeeecccccccCCc--eEEeccCccccHHHHHHHHh--cCCCCccccccc
Q 037568 363 AVCCICLAKYVDDDE--LRELICSHVFHVDCVDKWLK--INASCPLCKSEI 409 (423)
Q Consensus 363 ~eC~ICL~~y~dge~--lr~LPC~H~FH~~CId~WL~--~~~tCPlCR~~I 409 (423)
.+|+|||+.|+-.-+ +..|.|+|.|-.+||.+||. ....||+|+.+-
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 469999999986543 44566999999999999994 245799997653
No 44
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=7.7e-05 Score=73.52 Aligned_cols=48 Identities=25% Similarity=0.508 Sum_probs=40.9
Q ss_pred CceeeecccccccCCceEEeccCccccHHHHHHHHhc-CCCCcccccccCCC
Q 037568 362 DAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI-NASCPLCKSEIGDS 412 (423)
Q Consensus 362 d~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~ 412 (423)
+.+|.||+.+-... ..|+|+|.|+-.||+-=.+. +.+||+||.+|.++
T Consensus 7 ~~eC~IC~nt~n~P---v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTGNCP---VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccCCcC---ccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 46799999987666 68999999999999987765 45699999999775
No 45
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=8e-05 Score=75.66 Aligned_cols=51 Identities=27% Similarity=0.777 Sum_probs=39.4
Q ss_pred CCCceeeecccccccCC----ceEEec-cCccccHHHHHHHH--hc-----CCCCcccccccC
Q 037568 360 GEDAVCCICLAKYVDDD----ELRELI-CSHVFHVDCVDKWL--KI-----NASCPLCKSEIG 410 (423)
Q Consensus 360 ~ed~eC~ICL~~y~dge----~lr~LP-C~H~FH~~CId~WL--~~-----~~tCPlCR~~I~ 410 (423)
..+.+|.||++...+.. ....|| |+|.|+..||++|= ++ ...||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 34678999999876653 133456 99999999999998 44 578999998653
No 46
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.29 E-value=0.00012 Score=71.79 Aligned_cols=46 Identities=28% Similarity=0.645 Sum_probs=40.7
Q ss_pred eeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCCC
Q 037568 364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDS 412 (423)
Q Consensus 364 eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 412 (423)
.|-||-+-|... -+.+|+|.|+.-||..-|..+.-||+||.+-.+.
T Consensus 27 rC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~es 72 (391)
T COG5432 27 RCRICDCRISIP---CETTCGHTFCSLCIRRHLGTQPFCPVCREDPCES 72 (391)
T ss_pred Hhhhhhheeecc---eecccccchhHHHHHHHhcCCCCCccccccHHhh
Confidence 499999998877 5778999999999999999999999999876443
No 47
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.10 E-value=0.00036 Score=79.69 Aligned_cols=54 Identities=33% Similarity=0.795 Sum_probs=45.1
Q ss_pred cCCCCceeeecccccccCCceEEeccCccccHHHHHHHHhcC----------CCCcccccccCC
Q 037568 358 ISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKIN----------ASCPLCKSEIGD 411 (423)
Q Consensus 358 ls~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~----------~tCPlCR~~I~~ 411 (423)
....|..|.||+.+--.......|-|+|+||..|...-|+++ -+||+|+.+|..
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 345678999999998888888999999999999998877542 379999998864
No 48
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=97.01 E-value=0.00032 Score=61.96 Aligned_cols=35 Identities=23% Similarity=0.609 Sum_probs=30.9
Q ss_pred CceeeecccccccCCceEEeccC------ccccHHHHHHHH
Q 037568 362 DAVCCICLAKYVDDDELRELICS------HVFHVDCVDKWL 396 (423)
Q Consensus 362 d~eC~ICL~~y~dge~lr~LPC~------H~FH~~CId~WL 396 (423)
-.||+||++...+++-+..++|+ |+||.+|+++|=
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 46799999999997778888885 999999999994
No 49
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.00014 Score=73.01 Aligned_cols=49 Identities=31% Similarity=0.676 Sum_probs=40.8
Q ss_pred CceeeecccccccCCceEEec-cCccccHHHHHHHHhc-CCCCcccccccCCCC
Q 037568 362 DAVCCICLAKYVDDDELRELI-CSHVFHVDCVDKWLKI-NASCPLCKSEIGDSS 413 (423)
Q Consensus 362 d~eC~ICL~~y~dge~lr~LP-C~H~FH~~CId~WL~~-~~tCPlCR~~I~~~~ 413 (423)
+..|.|||+-+..- +..+ |.|-|+.+||.+=|+. +.+||.||+.+...-
T Consensus 43 ~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skr 93 (381)
T KOG0311|consen 43 QVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKR 93 (381)
T ss_pred hhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccc
Confidence 56799999987765 4555 9999999999999974 789999999886653
No 50
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.85 E-value=0.00035 Score=71.04 Aligned_cols=45 Identities=36% Similarity=0.814 Sum_probs=38.5
Q ss_pred ceeeecccccccC-CceEEeccCccccHHHHHHHHhcCC--CCccccc
Q 037568 363 AVCCICLAKYVDD-DELRELICSHVFHVDCVDKWLKINA--SCPLCKS 407 (423)
Q Consensus 363 ~eC~ICL~~y~dg-e~lr~LPC~H~FH~~CId~WL~~~~--tCPlCR~ 407 (423)
.-|..|=+.|-.. +.+-.|||.|+||..|+...|..|. +||-||+
T Consensus 366 L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 366 LYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 3599999998755 5688999999999999999998775 6999994
No 51
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.001 Score=63.29 Aligned_cols=51 Identities=29% Similarity=0.670 Sum_probs=42.8
Q ss_pred ceeeecccccccCCceEEeccCccccHHHHHHHHhc--------CCCCcccccccCCCCC
Q 037568 363 AVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI--------NASCPLCKSEIGDSSS 414 (423)
Q Consensus 363 ~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~--------~~tCPlCR~~I~~~~~ 414 (423)
.-|..|--.++.||.+| |-|-|.||.+|+++|-.. ..+||-|..+|.+...
T Consensus 51 pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~N 109 (299)
T KOG3970|consen 51 PNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPIN 109 (299)
T ss_pred CCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCcc
Confidence 34999999999998776 559999999999999843 3479999999988754
No 52
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.00066 Score=70.37 Aligned_cols=50 Identities=28% Similarity=0.748 Sum_probs=43.7
Q ss_pred CCCceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCCC
Q 037568 360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDS 412 (423)
Q Consensus 360 ~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 412 (423)
..+.+|+||+.-+.+. ..+||+|.|+..||++=|..+..||+||..+.+-
T Consensus 82 ~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~ 131 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQETECPLCRDELVEL 131 (398)
T ss_pred cchhhhhhhHhhcCCC---ccccccccccHHHHHHHhccCCCCcccccccccc
Confidence 4467899998888877 5679999999999999889999999999998763
No 53
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.00047 Score=51.50 Aligned_cols=45 Identities=29% Similarity=0.675 Sum_probs=32.8
Q ss_pred CceeeecccccccCCceEEe-ccCcc-ccHHHHH-HHHhcCCCCcccccccC
Q 037568 362 DAVCCICLAKYVDDDELREL-ICSHV-FHVDCVD-KWLKINASCPLCKSEIG 410 (423)
Q Consensus 362 d~eC~ICL~~y~dge~lr~L-PC~H~-FH~~CId-~WL~~~~tCPlCR~~I~ 410 (423)
++||.||++.-.|. +| -|+|+ .+-+|-. .|-..+.+||+||++|.
T Consensus 7 ~dECTICye~pvds----VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVDS----VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcchH----HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 36899999876554 34 49997 4556744 44447999999999874
No 54
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.00061 Score=61.71 Aligned_cols=33 Identities=24% Similarity=0.657 Sum_probs=29.3
Q ss_pred hcCCCCceeeecccccccCCceEEeccCccccH
Q 037568 357 MISGEDAVCCICLAKYVDDDELRELICSHVFHV 389 (423)
Q Consensus 357 ~ls~ed~eC~ICL~~y~dge~lr~LPC~H~FH~ 389 (423)
++..+..||.|||++++.|+.+..|||--+||+
T Consensus 172 VL~ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 172 VLKDDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred hhcccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 455566789999999999999999999999997
No 55
>PHA02862 5L protein; Provisional
Probab=96.39 E-value=0.0025 Score=56.86 Aligned_cols=43 Identities=28% Similarity=0.838 Sum_probs=33.7
Q ss_pred ceeeecccccccCCceEEeccC-----ccccHHHHHHHHhc--CCCCccccccc
Q 037568 363 AVCCICLAKYVDDDELRELICS-----HVFHVDCVDKWLKI--NASCPLCKSEI 409 (423)
Q Consensus 363 ~eC~ICL~~y~dge~lr~LPC~-----H~FH~~CId~WL~~--~~tCPlCR~~I 409 (423)
..|-||+++-+++ .-||. ..-|.+|+.+|++. +..||+||.+.
T Consensus 3 diCWIC~~~~~e~----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY 52 (156)
T PHA02862 3 DICWICNDVCDER----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKY 52 (156)
T ss_pred CEEEEecCcCCCC----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeE
Confidence 5699999985333 35763 78999999999964 56799999864
No 56
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.37 E-value=0.0021 Score=46.87 Aligned_cols=40 Identities=30% Similarity=0.826 Sum_probs=28.2
Q ss_pred eeecccccccCCceEEeccC-----ccccHHHHHHHHh--cCCCCccc
Q 037568 365 CCICLAKYVDDDELRELICS-----HVFHVDCVDKWLK--INASCPLC 405 (423)
Q Consensus 365 C~ICL~~y~dge~lr~LPC~-----H~FH~~CId~WL~--~~~tCPlC 405 (423)
|-||+++-++++ .-..||+ -+-|.+|+.+|+. .+.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 779999977776 3346763 5899999999996 45679988
No 57
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=96.07 E-value=0.0051 Score=55.83 Aligned_cols=46 Identities=28% Similarity=0.777 Sum_probs=33.8
Q ss_pred CCCceeeecccccccCCceEEecc--Cc---cccHHHHHHHHhc--CCCCccccccc
Q 037568 360 GEDAVCCICLAKYVDDDELRELIC--SH---VFHVDCVDKWLKI--NASCPLCKSEI 409 (423)
Q Consensus 360 ~ed~eC~ICL~~y~dge~lr~LPC--~H---~FH~~CId~WL~~--~~tCPlCR~~I 409 (423)
..+.+|-||.++.. +. .-|| +. .-|.+|+.+|+.. +..||+|+++.
T Consensus 6 ~~~~~CRIC~~~~~--~~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y 58 (162)
T PHA02825 6 LMDKCCWICKDEYD--VV--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPY 58 (162)
T ss_pred CCCCeeEecCCCCC--Cc--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeE
Confidence 34567999998843 22 2475 44 6799999999964 56799998764
No 58
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=96.06 E-value=0.0013 Score=51.02 Aligned_cols=43 Identities=23% Similarity=0.658 Sum_probs=21.9
Q ss_pred eeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccC
Q 037568 364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIG 410 (423)
Q Consensus 364 eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~ 410 (423)
.|++|.+-+.+. +..--|.|.|+..||.+-+. ..||+|+.+.-
T Consensus 9 rCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw 51 (65)
T PF14835_consen 9 RCSICFDILKEP--VCLGGCEHIFCSSCIRDCIG--SECPVCHTPAW 51 (65)
T ss_dssp S-SSS-S--SS---B---SSS--B-TTTGGGGTT--TB-SSS--B-S
T ss_pred CCcHHHHHhcCC--ceeccCccHHHHHHhHHhcC--CCCCCcCChHH
Confidence 499999987665 33446999999999988444 56999998753
No 59
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.03 E-value=0.0024 Score=65.25 Aligned_cols=47 Identities=28% Similarity=0.851 Sum_probs=39.0
Q ss_pred eeeecccccccCCceEEeccCccccHHHHHHHHhc--CCCCcccccccCCCC
Q 037568 364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI--NASCPLCKSEIGDSS 413 (423)
Q Consensus 364 eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~--~~tCPlCR~~I~~~~ 413 (423)
-|-||-+. +..++.=||+|..+..|+..|=.. ..+||.||.+|...+
T Consensus 371 LCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 371 LCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 49999875 455788899999999999999854 578999999986544
No 60
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.01 E-value=0.0021 Score=66.75 Aligned_cols=54 Identities=26% Similarity=0.632 Sum_probs=45.0
Q ss_pred CCCceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCCCCCC
Q 037568 360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSSSP 415 (423)
Q Consensus 360 ~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~~ 415 (423)
.++..|.||..-..+.-.. ..|+|.|+..|+.+|+..+..||.|+..+......
T Consensus 19 ~~~l~C~~C~~vl~~p~~~--~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQT--TTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEEL 72 (391)
T ss_pred cccccCccccccccCCCCC--CCCCCcccccccchhhccCcCCcccccccchhhcc
Confidence 3456799999999887322 57999999999999999999999999887665543
No 61
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=95.78 E-value=0.004 Score=47.29 Aligned_cols=40 Identities=23% Similarity=0.621 Sum_probs=28.5
Q ss_pred ceeeecccccccCCceEEeccCccccHHHHHHHHhc--CCCCcc
Q 037568 363 AVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI--NASCPL 404 (423)
Q Consensus 363 ~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~--~~tCPl 404 (423)
..|+|.+..|++. ++...|+|.|-++.|.+||+. ...||+
T Consensus 12 ~~CPiT~~~~~~P--V~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 12 LKCPITLQPFEDP--VKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp SB-TTTSSB-SSE--EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred cCCCCcCChhhCC--cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 5699999998865 566789999999999999943 557998
No 62
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.0056 Score=62.91 Aligned_cols=46 Identities=33% Similarity=0.748 Sum_probs=38.2
Q ss_pred ceeeecccccccCCceEEeccCccccHHHHHHHHhcC--------CCCcccccc
Q 037568 363 AVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKIN--------ASCPLCKSE 408 (423)
Q Consensus 363 ~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~--------~tCPlCR~~ 408 (423)
-.|+||+++..-.+-...|||+|+|++.|....+.+. -.||-|+..
T Consensus 185 f~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 185 FDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred ccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 4599999997777889999999999999999999542 358877653
No 63
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.0049 Score=67.68 Aligned_cols=49 Identities=27% Similarity=0.670 Sum_probs=39.8
Q ss_pred CceeeecccccccCCceEEeccCccccHHHHHHHHh-cCCCCcccccccCCCC
Q 037568 362 DAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLK-INASCPLCKSEIGDSS 413 (423)
Q Consensus 362 d~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~-~~~tCPlCR~~I~~~~ 413 (423)
-..|+.|-..+.|- ....|+|.||.+||.+-+. +...||.|...++.+.
T Consensus 643 ~LkCs~Cn~R~Kd~---vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDA---VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND 692 (698)
T ss_pred ceeCCCccCchhhH---HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence 35799999777764 3445999999999999996 4678999999887764
No 64
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.00 E-value=0.016 Score=64.37 Aligned_cols=51 Identities=31% Similarity=0.783 Sum_probs=38.2
Q ss_pred cCCCCceeeecccccccCCceEEe-ccCccccHHHHHHHHhcC-------CCCcccccc
Q 037568 358 ISGEDAVCCICLAKYVDDDELREL-ICSHVFHVDCVDKWLKIN-------ASCPLCKSE 408 (423)
Q Consensus 358 ls~ed~eC~ICL~~y~dge~lr~L-PC~H~FH~~CId~WL~~~-------~tCPlCR~~ 408 (423)
++.+..+|.||++.+..-+.+=.- .|-|+||..||.+|-+.. =.||-|+..
T Consensus 187 l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 187 LSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred HhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 445567899999998876654322 388999999999998541 259999843
No 65
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.035 Score=54.53 Aligned_cols=52 Identities=19% Similarity=0.397 Sum_probs=40.0
Q ss_pred cCCCCceeeecccccccCCceEEeccCccccHHHHHHHHhc--CCCCcccccccCC
Q 037568 358 ISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI--NASCPLCKSEIGD 411 (423)
Q Consensus 358 ls~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~--~~tCPlCR~~I~~ 411 (423)
....+.+|++|-+.-... ....+|+|.|+--||.+=+.- ..+||.|-.++.+
T Consensus 235 ~~t~~~~C~~Cg~~PtiP--~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPTIP--HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred cccCCceeeccCCCCCCC--eeeccccceeehhhhhhhhcchhhcccCccCCCCcc
Confidence 345578899998874443 355679999999999997753 4689999988774
No 66
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.0021 Score=65.50 Aligned_cols=51 Identities=24% Similarity=0.675 Sum_probs=46.6
Q ss_pred eeeecccccccC-CceEEeccCccccHHHHHHHHhcCCCCcccccccCCCCC
Q 037568 364 VCCICLAKYVDD-DELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSSS 414 (423)
Q Consensus 364 eC~ICL~~y~dg-e~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~ 414 (423)
.|+||..+|... +++..+-|+|.+|.+||.+||.....||-|+.++.....
T Consensus 198 sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~~ 249 (465)
T KOG0827|consen 198 SLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKNGF 249 (465)
T ss_pred hhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhhhH
Confidence 499999999988 889999999999999999999999999999999877643
No 67
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=94.73 E-value=0.011 Score=59.35 Aligned_cols=49 Identities=27% Similarity=0.602 Sum_probs=41.3
Q ss_pred CceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCCC
Q 037568 362 DAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDS 412 (423)
Q Consensus 362 d~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 412 (423)
..+|.+|-.=|.|.. .+.-|-|.|++.||-+.|..+.+||.|...|.+.
T Consensus 15 ~itC~LC~GYliDAT--TI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 15 HITCRLCGGYLIDAT--TITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred ceehhhccceeecch--hHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 467999988888774 2234999999999999999999999999888765
No 68
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=94.72 E-value=0.012 Score=49.20 Aligned_cols=32 Identities=25% Similarity=0.633 Sum_probs=27.0
Q ss_pred CCceeeecccccccCCceEEeccCccccHHHHH
Q 037568 361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVD 393 (423)
Q Consensus 361 ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId 393 (423)
++..|++|-..+.. ......||+|.||..|++
T Consensus 77 ~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 34569999999987 567788999999999975
No 69
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.59 E-value=0.043 Score=53.10 Aligned_cols=56 Identities=16% Similarity=0.287 Sum_probs=48.9
Q ss_pred CCceeeecccccccCCceEEe-ccCccccHHHHHHHHhcCCCCcccccccCCCCCCC
Q 037568 361 EDAVCCICLAKYVDDDELREL-ICSHVFHVDCVDKWLKINASCPLCKSEIGDSSSPL 416 (423)
Q Consensus 361 ed~eC~ICL~~y~dge~lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~~~ 416 (423)
....|+||.+.+.+-..+..| ||+|+|..+|+.+.++.-..||+|-.++.+.....
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceEe
Confidence 456799999999999988888 69999999999999999999999988876655443
No 70
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.06 E-value=0.024 Score=53.13 Aligned_cols=43 Identities=23% Similarity=0.532 Sum_probs=37.9
Q ss_pred eeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCccccccc
Q 037568 364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEI 409 (423)
Q Consensus 364 eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I 409 (423)
.|-||-.+|+.. ....|+|+|+..|.-+=++...+|-+|-+.-
T Consensus 198 ~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 198 LCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred eehhchhhccch---hhhhcchhHHHHHHHHHhccCCcceecchhh
Confidence 699999999987 5677999999999999888889999996643
No 71
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=93.91 E-value=0.026 Score=59.69 Aligned_cols=50 Identities=24% Similarity=0.572 Sum_probs=39.2
Q ss_pred CCceeeecccccccCCceEEeccCccccHHHHHHHHh-----cCCCCcccccccCCCC
Q 037568 361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLK-----INASCPLCKSEIGDSS 413 (423)
Q Consensus 361 ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~-----~~~tCPlCR~~I~~~~ 413 (423)
+..+|-+|-+.-+|- .+..|.|.|++-||.++.. .+-+||.|-..+.-+.
T Consensus 535 ~~~~C~lc~d~aed~---i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDY---IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL 589 (791)
T ss_pred CceeecccCChhhhh---HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence 456899999875554 5667999999999999883 3678999987765443
No 72
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.85 E-value=0.03 Score=41.05 Aligned_cols=43 Identities=21% Similarity=0.512 Sum_probs=21.5
Q ss_pred eeecccccccCCceEEec--cCccccHHHHHHHHh-cCCCCcccccc
Q 037568 365 CCICLAKYVDDDELRELI--CSHVFHVDCVDKWLK-INASCPLCKSE 408 (423)
Q Consensus 365 C~ICL~~y~dge~lr~LP--C~H~FH~~CId~WL~-~~~tCPlCR~~ 408 (423)
|.+|.+++ +......+| |++.....|...-++ .+..||-||.+
T Consensus 1 cp~C~e~~-d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEEL-DETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREP 46 (48)
T ss_dssp -TTTS-B---CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B
T ss_pred CCCccccc-ccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence 77899998 333345566 688888888777775 47899999975
No 73
>PHA03096 p28-like protein; Provisional
Probab=93.83 E-value=0.029 Score=55.91 Aligned_cols=36 Identities=25% Similarity=0.562 Sum_probs=28.6
Q ss_pred ceeeecccccccCC----ceEEec-cCccccHHHHHHHHhc
Q 037568 363 AVCCICLAKYVDDD----ELRELI-CSHVFHVDCVDKWLKI 398 (423)
Q Consensus 363 ~eC~ICL~~y~dge----~lr~LP-C~H~FH~~CId~WL~~ 398 (423)
.+|.||++...... .-..|+ |.|.|+..||..|-..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~ 219 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTE 219 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHh
Confidence 57999999876542 234677 9999999999999843
No 74
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.58 E-value=0.038 Score=56.16 Aligned_cols=43 Identities=28% Similarity=0.575 Sum_probs=32.4
Q ss_pred ceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCC
Q 037568 363 AVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGD 411 (423)
Q Consensus 363 ~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~ 411 (423)
.-|.||+++..+ ...+||+|+=+ |..-- +...+||+||..|..
T Consensus 306 ~lcVVcl~e~~~---~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 306 DLCVVCLDEPKS---AVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIRL 348 (355)
T ss_pred CceEEecCCccc---eeeecCCcEEE--chHHH-hhCCCCchhHHHHHH
Confidence 459999999777 47899999955 65543 335569999998753
No 75
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.26 E-value=0.032 Score=53.89 Aligned_cols=44 Identities=32% Similarity=0.612 Sum_probs=33.3
Q ss_pred eeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccC
Q 037568 364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIG 410 (423)
Q Consensus 364 eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~ 410 (423)
.|.-|..-=. +++...+.|.|+|+..|...=. ...||+||+.|.
T Consensus 5 hCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~~--~~~C~lCkk~ir 48 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTACRHVFCEPCLKASS--PDVCPLCKKSIR 48 (233)
T ss_pred EeccccccCC-CCceeeeechhhhhhhhcccCC--ccccccccceee
Confidence 4766655433 8899999999999999965422 338999999863
No 76
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=92.57 E-value=0.096 Score=51.97 Aligned_cols=51 Identities=29% Similarity=0.643 Sum_probs=39.2
Q ss_pred CceeeecccccccCCc-eEEeccC-----ccccHHHHHHHHh--cCCCCcccccccCCC
Q 037568 362 DAVCCICLAKYVDDDE-LRELICS-----HVFHVDCVDKWLK--INASCPLCKSEIGDS 412 (423)
Q Consensus 362 d~eC~ICL~~y~dge~-lr~LPC~-----H~FH~~CId~WL~--~~~tCPlCR~~I~~~ 412 (423)
+..|-||..+...... .-+.||. +..|..|+++|+. .+.+|.+|+......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 4789999998665432 4566874 8889999999997 567899998865443
No 77
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.35 E-value=0.071 Score=54.06 Aligned_cols=48 Identities=29% Similarity=0.537 Sum_probs=41.5
Q ss_pred CCCceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccC
Q 037568 360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIG 410 (423)
Q Consensus 360 ~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~ 410 (423)
.||..|+||...--.. ...||+|.=+..||.+-|-.++.|=.||..+.
T Consensus 420 sEd~lCpICyA~pi~A---vf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINA---VFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecccchh---hccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 6788999998764333 56799999999999999999999999999876
No 78
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.09 E-value=0.05 Score=53.95 Aligned_cols=46 Identities=24% Similarity=0.457 Sum_probs=40.3
Q ss_pred eeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCCC
Q 037568 364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDS 412 (423)
Q Consensus 364 eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 412 (423)
.|-||-..|.+. ....|+|+|+..|--+=++....|++|-+.+-..
T Consensus 243 ~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~ 288 (313)
T KOG1813|consen 243 KCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGS 288 (313)
T ss_pred cccccccccccc---hhhcCCceeehhhhccccccCCcceecccccccc
Confidence 399999999998 5778999999999999888899999998876543
No 79
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=92.01 E-value=0.15 Score=46.47 Aligned_cols=37 Identities=30% Similarity=0.626 Sum_probs=23.4
Q ss_pred CCceeeecccccccCCceE---------EeccC-ccccHHHHHHHHh
Q 037568 361 EDAVCCICLAKYVDDDELR---------ELICS-HVFHVDCVDKWLK 397 (423)
Q Consensus 361 ed~eC~ICL~~y~dge~lr---------~LPC~-H~FH~~CId~WL~ 397 (423)
||+.|+|||+--.+...|. -.=|+ -+=|..|+|+.=+
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 4678999998755542211 11142 4558999999763
No 80
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=91.78 E-value=0.23 Score=50.04 Aligned_cols=49 Identities=22% Similarity=0.455 Sum_probs=37.7
Q ss_pred cCCCCceeeecccccccCCceEEec-cCccccHHHHHHHHhcCCCCccccccc
Q 037568 358 ISGEDAVCCICLAKYVDDDELRELI-CSHVFHVDCVDKWLKINASCPLCKSEI 409 (423)
Q Consensus 358 ls~ed~eC~ICL~~y~dge~lr~LP-C~H~FH~~CId~WL~~~~tCPlCR~~I 409 (423)
+..+...|++|+..-.++ ..|- -|-+||..||-+.++.+..||+=-.++
T Consensus 296 l~~~~~~CpvClk~r~Np---tvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKRQNP---TVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CCCccccChhHHhccCCC---ceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 345567799999996665 2333 389999999999999999999854443
No 81
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=91.22 E-value=0.087 Score=52.34 Aligned_cols=47 Identities=21% Similarity=0.547 Sum_probs=35.2
Q ss_pred ceeeecccccccCCceEEec-cCccccHHHHHHHH-hcCCCCccc-ccccCCC
Q 037568 363 AVCCICLAKYVDDDELRELI-CSHVFHVDCVDKWL-KINASCPLC-KSEIGDS 412 (423)
Q Consensus 363 ~eC~ICL~~y~dge~lr~LP-C~H~FH~~CId~WL-~~~~tCPlC-R~~I~~~ 412 (423)
..|..|-+-.... ...| |+|.|+.+||..-| .....||.| |++|+-+
T Consensus 275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld 324 (427)
T COG5222 275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLD 324 (427)
T ss_pred ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCcccccchhh
Confidence 4599988876665 3446 79999999999887 466789999 4455433
No 82
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=91.20 E-value=0.086 Score=52.25 Aligned_cols=43 Identities=26% Similarity=0.624 Sum_probs=38.6
Q ss_pred eeecccccccCC-ceEEeccCccccHHHHHHHHhcCCCCccccc
Q 037568 365 CCICLAKYVDDD-ELRELICSHVFHVDCVDKWLKINASCPLCKS 407 (423)
Q Consensus 365 C~ICL~~y~dge-~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~ 407 (423)
|.||.+.+-+.. .+..|+|+|.-|..|..+-...+-+||+|.+
T Consensus 161 cPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 161 CPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 999999987775 4678899999999999999888899999988
No 83
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.82 E-value=0.16 Score=50.48 Aligned_cols=47 Identities=32% Similarity=0.719 Sum_probs=38.7
Q ss_pred ceeeecccccccCCc---eEEeccCccccHHHHHHHHhc-CCCCccccccc
Q 037568 363 AVCCICLAKYVDDDE---LRELICSHVFHVDCVDKWLKI-NASCPLCKSEI 409 (423)
Q Consensus 363 ~eC~ICL~~y~dge~---lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I 409 (423)
.+|-||=++|..++. -|.|-|+|.|...|+.+-+.. ...||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 359999999998753 367789999999999987764 45699999985
No 84
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=90.17 E-value=0.11 Score=51.99 Aligned_cols=43 Identities=28% Similarity=0.604 Sum_probs=29.4
Q ss_pred eeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccC
Q 037568 364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIG 410 (423)
Q Consensus 364 eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~ 410 (423)
.|--|=.. ..-.-|.+||+|+|+.+|-.. ..-+.||+|-..|.
T Consensus 92 fCd~Cd~P--I~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 92 FCDRCDFP--IAIYGRMIPCKHVFCLECARS--DSDKICPLCDDRVQ 134 (389)
T ss_pred eecccCCc--ceeeecccccchhhhhhhhhc--CccccCcCcccHHH
Confidence 35555333 222338999999999999543 44568999977664
No 85
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=89.87 E-value=0.12 Score=36.98 Aligned_cols=41 Identities=24% Similarity=0.639 Sum_probs=22.1
Q ss_pred eeecccccccCCceEEeccCccccHHHHHHHHhcCC--CCccc
Q 037568 365 CCICLAKYVDDDELRELICSHVFHVDCVDKWLKINA--SCPLC 405 (423)
Q Consensus 365 C~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~--tCPlC 405 (423)
|.+|-+-...|.....-.|+=.+|..|++++++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 455666555554333334888899999999997655 79988
No 86
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.35 E-value=0.23 Score=45.98 Aligned_cols=49 Identities=31% Similarity=0.733 Sum_probs=33.6
Q ss_pred eeeecccccccCC----ceEEeccCccccHHHHHHHHhc-----------CCCCcccccccCCC
Q 037568 364 VCCICLAKYVDDD----ELRELICSHVFHVDCVDKWLKI-----------NASCPLCKSEIGDS 412 (423)
Q Consensus 364 eC~ICL~~y~dge----~lr~LPC~H~FH~~CId~WL~~-----------~~tCPlCR~~I~~~ 412 (423)
.|.||..---+|. ..--..|+.-||.-|+..||+. -..||.|-.+|.-.
T Consensus 167 ~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 167 ACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred cccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 3666654333332 2234569999999999999953 24799999888543
No 87
>PF04641 Rtf2: Rtf2 RING-finger
Probab=89.13 E-value=0.42 Score=47.00 Aligned_cols=54 Identities=17% Similarity=0.394 Sum_probs=42.4
Q ss_pred CceeeecccccccCCceEEe-ccCccccHHHHHHHHhcCCCCcccccccCCCCCCC
Q 037568 362 DAVCCICLAKYVDDDELREL-ICSHVFHVDCVDKWLKINASCPLCKSEIGDSSSPL 416 (423)
Q Consensus 362 d~eC~ICL~~y~dge~lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~~~ 416 (423)
...|+|...+|........| ||||+|-..+|++- +....||+|-.+..+.....
T Consensus 113 ~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 113 RFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred eeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccCCEEE
Confidence 45799999999766666666 89999999999995 43567999988877554433
No 88
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.07 E-value=0.067 Score=53.00 Aligned_cols=43 Identities=28% Similarity=0.634 Sum_probs=31.6
Q ss_pred CceeeecccccccCCceEEeccCcccc-HHHHHHHHhcCCCCcccccccCC
Q 037568 362 DAVCCICLAKYVDDDELRELICSHVFH-VDCVDKWLKINASCPLCKSEIGD 411 (423)
Q Consensus 362 d~eC~ICL~~y~dge~lr~LPC~H~FH-~~CId~WL~~~~tCPlCR~~I~~ 411 (423)
+.-|+||++.-.| ...|+|+|.-- .+|-+ +-..||+||+.|.+
T Consensus 300 ~~LC~ICmDaP~D---CvfLeCGHmVtCt~CGk----rm~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAPRD---CVFLECGHMVTCTKCGK----RMNECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCCcc---eEEeecCcEEeehhhcc----ccccCchHHHHHHH
Confidence 5679999987444 58899999864 45633 23489999998754
No 89
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=89.02 E-value=0.2 Score=37.74 Aligned_cols=45 Identities=20% Similarity=0.454 Sum_probs=34.2
Q ss_pred eeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCCCC
Q 037568 364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSS 413 (423)
Q Consensus 364 eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 413 (423)
.|..|...=. +-..|||+|+-...|.+- ++-+-||+|-+++..++
T Consensus 9 ~~~~~~~~~~---~~~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 9 PCVFCGFVGT---KGTVLPCGHLICDNCFPG--ERYNGCPFCGTPFEFDD 53 (55)
T ss_pred eEEEcccccc---ccccccccceeeccccCh--hhccCCCCCCCcccCCC
Confidence 4666665433 337899999999999775 56678999999887654
No 90
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=87.18 E-value=0.38 Score=53.57 Aligned_cols=51 Identities=25% Similarity=0.686 Sum_probs=38.4
Q ss_pred CCCCceeeecccccccCCceEEeccC-----ccccHHHHHHHHhcC--CCCcccccccC
Q 037568 359 SGEDAVCCICLAKYVDDDELRELICS-----HVFHVDCVDKWLKIN--ASCPLCKSEIG 410 (423)
Q Consensus 359 s~ed~eC~ICL~~y~dge~lr~LPC~-----H~FH~~CId~WL~~~--~tCPlCR~~I~ 410 (423)
.+++..|-||..+=..++++- =||+ -+-|.+|+-+|+.-. ..|-+|++++.
T Consensus 9 N~d~~~CRICr~e~~~d~pLf-hPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDPLF-HPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred CccchhceeecCCCCCCCcCc-ccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 345677999999866665542 2664 689999999999754 45999998763
No 91
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.08 E-value=0.29 Score=54.99 Aligned_cols=36 Identities=22% Similarity=0.490 Sum_probs=29.0
Q ss_pred CCCceeeecccccccCCceEEeccCccccHHHHHHHH
Q 037568 360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWL 396 (423)
Q Consensus 360 ~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL 396 (423)
+.+.+|.+|...+... .-..-||+|.||++||.+=.
T Consensus 815 ep~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred cCccchHHhcchhhcC-cceeeeccchHHHHHHHHHH
Confidence 5567899999887665 55677999999999997654
No 92
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=86.88 E-value=0.86 Score=46.96 Aligned_cols=27 Identities=26% Similarity=1.061 Sum_probs=21.3
Q ss_pred cCccccHHHHHHHHhc-------------CCCCccccccc
Q 037568 383 CSHVFHVDCVDKWLKI-------------NASCPLCKSEI 409 (423)
Q Consensus 383 C~H~FH~~CId~WL~~-------------~~tCPlCR~~I 409 (423)
|.-+++.+|+.+|+.. +.+||.||+..
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 5677889999999932 45899999874
No 93
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.66 E-value=0.39 Score=53.77 Aligned_cols=42 Identities=24% Similarity=0.733 Sum_probs=33.2
Q ss_pred ceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCccccccc
Q 037568 363 AVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEI 409 (423)
Q Consensus 363 ~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I 409 (423)
..|..|--..+-+ ...--|+|.||..|+. .....||-|+.+.
T Consensus 841 skCs~C~~~LdlP--~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 841 SKCSACEGTLDLP--FVHFLCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeecccCCccccc--eeeeecccHHHHHhhc---cCcccCCccchhh
Confidence 4799998886654 3455699999999998 5567899999844
No 94
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=86.21 E-value=0.32 Score=54.13 Aligned_cols=45 Identities=36% Similarity=0.770 Sum_probs=36.7
Q ss_pred ceeeecccccccCCceEEeccCccccHHHHHHHHhc--CCCCcccccccCC
Q 037568 363 AVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI--NASCPLCKSEIGD 411 (423)
Q Consensus 363 ~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~--~~tCPlCR~~I~~ 411 (423)
..|.||++ .+..-..+|+|.|+.+|+.+-+.. ...||+||..+..
T Consensus 455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 78999999 445567789999999999998853 4569999987754
No 95
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.67 E-value=0.44 Score=46.60 Aligned_cols=48 Identities=29% Similarity=0.749 Sum_probs=34.3
Q ss_pred CceeeecccccccCCce-EEecc-----CccccHHHHHHHHhcC--------CCCccccccc
Q 037568 362 DAVCCICLAKYVDDDEL-RELIC-----SHVFHVDCVDKWLKIN--------ASCPLCKSEI 409 (423)
Q Consensus 362 d~eC~ICL~~y~dge~l-r~LPC-----~H~FH~~CId~WL~~~--------~tCPlCR~~I 409 (423)
+..|-||+..=+|+..- =+=|| +|--|..|+..|+..+ -+||-|+.+-
T Consensus 20 eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 20 ERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred ceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 45688999986665321 13376 4999999999999432 2599999864
No 96
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=85.64 E-value=0.71 Score=46.94 Aligned_cols=47 Identities=28% Similarity=0.642 Sum_probs=36.1
Q ss_pred CCCceeeecccccccCCceEEeccCccccHHHHHHH--HhcCCCCccccccc
Q 037568 360 GEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKW--LKINASCPLCKSEI 409 (423)
Q Consensus 360 ~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~W--L~~~~tCPlCR~~I 409 (423)
++..-|-||-....-. -.+||+|..+-.|--.- |-....||+||.+-
T Consensus 59 Een~~C~ICA~~~TYs---~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 59 EENMNCQICAGSTTYS---ARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccceeEEecCCceEE---EeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 3455699998875543 68899999999996543 56688999999853
No 97
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.57 E-value=0.27 Score=53.44 Aligned_cols=48 Identities=35% Similarity=0.578 Sum_probs=36.7
Q ss_pred ceeeecccccccCCce-EEeccCccccHHHHHHHHhcCCCCcccccccCCCC
Q 037568 363 AVCCICLAKYVDDDEL-RELICSHVFHVDCVDKWLKINASCPLCKSEIGDSS 413 (423)
Q Consensus 363 ~eC~ICL~~y~dge~l-r~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 413 (423)
..|.||+..|.....+ +-|-|+|.-+..|+.+ ..|++|| |+++=.+..
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~--lyn~scp-~~~De~~~~ 60 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQL--LYNASCP-TKRDEDSSL 60 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHh--HhhccCC-CCccccchh
Confidence 4599999999877433 4556999999999987 5688999 887654443
No 98
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.31 E-value=0.64 Score=50.48 Aligned_cols=50 Identities=32% Similarity=0.794 Sum_probs=41.4
Q ss_pred cCCCCceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCCCCC
Q 037568 358 ISGEDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSSS 414 (423)
Q Consensus 358 ls~ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~ 414 (423)
+.+....|.||+.+. ..|..+|. |..|..+|+..+..||+|...+..+..
T Consensus 475 l~~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~ 524 (543)
T KOG0802|consen 475 LREPNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDDF 524 (543)
T ss_pred hhcccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhcccc
Confidence 445556799999998 55788899 999999999999999999887765543
No 99
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=83.14 E-value=0.66 Score=33.94 Aligned_cols=32 Identities=22% Similarity=0.676 Sum_probs=23.5
Q ss_pred Eecc-CccccHHHHHHHHhcCCCCcccccccCC
Q 037568 380 ELIC-SHVFHVDCVDKWLKINASCPLCKSEIGD 411 (423)
Q Consensus 380 ~LPC-~H~FH~~CId~WL~~~~tCPlCR~~I~~ 411 (423)
...| .|+.+..|+..-|.+...||+|+.+++.
T Consensus 15 Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 15 LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp EEE-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred eeeecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 4458 5999999999999999999999998865
No 100
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=83.06 E-value=0.71 Score=44.78 Aligned_cols=50 Identities=26% Similarity=0.569 Sum_probs=36.5
Q ss_pred CceeeecccccccCCceEEe--c-cCccccHHHHHHHHhc-CCCCc--ccccccCC
Q 037568 362 DAVCCICLAKYVDDDELREL--I-CSHVFHVDCVDKWLKI-NASCP--LCKSEIGD 411 (423)
Q Consensus 362 d~eC~ICL~~y~dge~lr~L--P-C~H~FH~~CId~WL~~-~~tCP--lCR~~I~~ 411 (423)
|..|+||-.+---+-.++.| | |-|..+..|+|.-+.. .+.|| -|-+-+.+
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK 65 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRK 65 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHH
Confidence 55799999874433334444 7 9999999999999965 67899 78554433
No 101
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=80.70 E-value=0.55 Score=54.79 Aligned_cols=47 Identities=34% Similarity=0.684 Sum_probs=38.3
Q ss_pred CceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccC
Q 037568 362 DAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIG 410 (423)
Q Consensus 362 d~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~ 410 (423)
-..|.||++....-- ...-|+|.|++.|+..|++.+..||.|+....
T Consensus 1153 ~~~c~ic~dil~~~~--~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQG--GIAGCGHEPCCRCDELWLYASSRCPICKSIKG 1199 (1394)
T ss_pred ccchHHHHHHHHhcC--CeeeechhHhhhHHHHHHHHhccCcchhhhhh
Confidence 347999999987321 34559999999999999999999999995443
No 102
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=80.56 E-value=1.2 Score=44.33 Aligned_cols=51 Identities=27% Similarity=0.589 Sum_probs=37.7
Q ss_pred eeeecccc-cccCCc-eEEeccCccccHHHHHHHHhc-CCCCcccccccCCCCC
Q 037568 364 VCCICLAK-YVDDDE-LRELICSHVFHVDCVDKWLKI-NASCPLCKSEIGDSSS 414 (423)
Q Consensus 364 eC~ICL~~-y~dge~-lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~~~ 414 (423)
.|++|-.+ |-..+. +..=||+|--+..|+|.-+.. .+.||-|-..+.++.-
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence 38899866 444442 233389999999999999865 5689999887776643
No 103
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=79.72 E-value=2.7 Score=46.83 Aligned_cols=39 Identities=28% Similarity=0.648 Sum_probs=27.7
Q ss_pred eeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcc
Q 037568 365 CCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPL 404 (423)
Q Consensus 365 C~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPl 404 (423)
|+||--... |--....-|+|.-|..|...|+.....||.
T Consensus 1031 C~~C~l~V~-gss~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1031 CAICHLAVR-GSSNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeEeeEee-ccchhhccccccccHHHHHHHHhcCCcCCC
Confidence 555543322 222234469999999999999999999985
No 104
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.89 E-value=1.1 Score=44.58 Aligned_cols=27 Identities=22% Similarity=0.780 Sum_probs=21.9
Q ss_pred cCccccHHHHHHHH-------------hcCCCCccccccc
Q 037568 383 CSHVFHVDCVDKWL-------------KINASCPLCKSEI 409 (423)
Q Consensus 383 C~H~FH~~CId~WL-------------~~~~tCPlCR~~I 409 (423)
|.-+.+.+|+.+|+ +.+.+||.||++.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f 364 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF 364 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence 46778899999988 3467999999875
No 105
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=78.33 E-value=1.2 Score=44.80 Aligned_cols=45 Identities=24% Similarity=0.620 Sum_probs=36.2
Q ss_pred CCCceeeecccccccCCceEEecc--CccccHHHHHHHHhcCCCCcccccccCC
Q 037568 360 GEDAVCCICLAKYVDDDELRELIC--SHVFHVDCVDKWLKINASCPLCKSEIGD 411 (423)
Q Consensus 360 ~ed~eC~ICL~~y~dge~lr~LPC--~H~FH~~CId~WL~~~~tCPlCR~~I~~ 411 (423)
.+-.+|+||...+... ...| +|+-+..|-. +....||.||.+|.+
T Consensus 46 ~~lleCPvC~~~l~~P----i~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPP----IFQCDNGHLACSSCRT---KVSNKCPTCRLPIGN 92 (299)
T ss_pred hhhccCchhhccCccc----ceecCCCcEehhhhhh---hhcccCCcccccccc
Confidence 3446799999998886 6668 6999999864 567889999999873
No 106
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=77.90 E-value=2.7 Score=31.68 Aligned_cols=42 Identities=29% Similarity=0.684 Sum_probs=34.1
Q ss_pred ceeeecccccccCCceEEec-cCccccHHHHHHHHhcCCCCcc--cccc
Q 037568 363 AVCCICLAKYVDDDELRELI-CSHVFHVDCVDKWLKINASCPL--CKSE 408 (423)
Q Consensus 363 ~eC~ICL~~y~dge~lr~LP-C~H~FH~~CId~WL~~~~tCPl--CR~~ 408 (423)
..|.+|-..|.+++.+.+=| |+-.+|.+|-++ ...|-+ |..+
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~~ 50 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGTG 50 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCCC
Confidence 45999999999998888888 999999999665 666755 5543
No 107
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=77.57 E-value=1 Score=44.31 Aligned_cols=47 Identities=23% Similarity=0.554 Sum_probs=36.9
Q ss_pred ceeeecccccccCCceEEe---c-cCccccHHHHHHHHhc---------CCCCccccccc
Q 037568 363 AVCCICLAKYVDDDELREL---I-CSHVFHVDCVDKWLKI---------NASCPLCKSEI 409 (423)
Q Consensus 363 ~eC~ICL~~y~dge~lr~L---P-C~H~FH~~CId~WL~~---------~~tCPlCR~~I 409 (423)
.+|-+|.++|...++.+.. | |.-++|..|+..-+.. .+.||.|++-+
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 5899999999766666655 2 8999999999995532 46899998743
No 108
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=77.35 E-value=0.64 Score=51.30 Aligned_cols=51 Identities=33% Similarity=0.628 Sum_probs=41.4
Q ss_pred CceeeecccccccCCceEEeccCccccHHHHHHHHhc---CCCCcccccccCCCCCC
Q 037568 362 DAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI---NASCPLCKSEIGDSSSP 415 (423)
Q Consensus 362 d~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~---~~tCPlCR~~I~~~~~~ 415 (423)
..+|.||+.-|.+. ..+.|.|.|...|+-.=|.. ...||+|+..+.+-+..
T Consensus 21 ~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~ 74 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLR 74 (684)
T ss_pred hccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhcc
Confidence 35799999999988 56779999999998887743 45799999888776543
No 109
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.78 E-value=1.6 Score=41.72 Aligned_cols=40 Identities=25% Similarity=0.595 Sum_probs=28.0
Q ss_pred eeecccccccCCceEEeccCcc-ccHHHHHHHHhcCCCCcccccccCC
Q 037568 365 CCICLAKYVDDDELRELICSHV-FHVDCVDKWLKINASCPLCKSEIGD 411 (423)
Q Consensus 365 C~ICL~~y~dge~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~I~~ 411 (423)
|..|-+. +..+-.|||.|+ ++..|=+. -.+||+|+.....
T Consensus 161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLPCRHLCLCGICDES----LRICPICRSPKTS 201 (207)
T ss_pred ceecCcC---CceEEeecccceEeccccccc----CccCCCCcChhhc
Confidence 7777654 666888999865 55668544 4459999876543
No 110
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=75.74 E-value=1.8 Score=48.29 Aligned_cols=50 Identities=12% Similarity=0.191 Sum_probs=36.0
Q ss_pred CceeeecccccccC-CceEEec---cCccccHHHHHHHHhc------CCCCcccccccCC
Q 037568 362 DAVCCICLAKYVDD-DELRELI---CSHVFHVDCVDKWLKI------NASCPLCKSEIGD 411 (423)
Q Consensus 362 d~eC~ICL~~y~dg-e~lr~LP---C~H~FH~~CId~WL~~------~~tCPlCR~~I~~ 411 (423)
...|.||.-++.+. |-.-.+| |.|-|+..||.+|+.+ +-.|++|+..|..
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~s 155 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGS 155 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhh
Confidence 34466666666553 3355667 9999999999999943 4569999987743
No 111
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=68.36 E-value=2.2 Score=46.62 Aligned_cols=40 Identities=28% Similarity=0.746 Sum_probs=26.3
Q ss_pred ceeeeccc-----ccccCCceEEeccCccccHHHHHHHHhcCCCCccc
Q 037568 363 AVCCICLA-----KYVDDDELRELICSHVFHVDCVDKWLKINASCPLC 405 (423)
Q Consensus 363 ~eC~ICL~-----~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlC 405 (423)
..|-||-. .|+.....|..-|+++||+.|... .+..||-|
T Consensus 512 fiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC 556 (580)
T KOG1829|consen 512 FICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRC 556 (580)
T ss_pred eeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCch
Confidence 45778822 244344456667999999999543 23349999
No 112
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=68.26 E-value=3.3 Score=42.15 Aligned_cols=51 Identities=20% Similarity=0.496 Sum_probs=34.7
Q ss_pred CceeeecccccccCCc-eEEeccCccccHHHHHHHH-hcCCCCcccccccCCC
Q 037568 362 DAVCCICLAKYVDDDE-LRELICSHVFHVDCVDKWL-KINASCPLCKSEIGDS 412 (423)
Q Consensus 362 d~eC~ICL~~y~dge~-lr~LPC~H~FH~~CId~WL-~~~~tCPlCR~~I~~~ 412 (423)
+..|..|++++...|+ ..--||+-..+.-|...-= ..|..||-||..-.+.
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~de 66 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDE 66 (480)
T ss_pred cccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence 3459999999877664 3444688766666633321 3588999999876554
No 113
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=64.34 E-value=3.6 Score=43.20 Aligned_cols=35 Identities=29% Similarity=0.487 Sum_probs=30.9
Q ss_pred CCceeeecccccccCCceEEeccCccccHHHHHHHHhc
Q 037568 361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKI 398 (423)
Q Consensus 361 ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~ 398 (423)
|+..|.||..-|++. ..|||+|..+..|-..-+..
T Consensus 3 eelkc~vc~~f~~ep---iil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 3 EELKCPVCGSFYREP---IILPCSHNLCQACARNILVQ 37 (699)
T ss_pred ccccCceehhhccCc---eEeecccHHHHHHHHhhccc
Confidence 456799999999998 89999999999999887744
No 114
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.87 E-value=2.9 Score=43.56 Aligned_cols=37 Identities=30% Similarity=0.694 Sum_probs=28.1
Q ss_pred CceeeecccccccC-CceEEeccCccccHHHHHHHHhc
Q 037568 362 DAVCCICLAKYVDD-DELRELICSHVFHVDCVDKWLKI 398 (423)
Q Consensus 362 d~eC~ICL~~y~dg-e~lr~LPC~H~FH~~CId~WL~~ 398 (423)
..+|.||..++... +....+-|+|.|+.+|+.+-+..
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence 35699999665555 33445669999999999988864
No 115
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=59.88 E-value=7.9 Score=34.48 Aligned_cols=53 Identities=26% Similarity=0.597 Sum_probs=36.3
Q ss_pred ceeeecccccccCCceEEec-cCccccHHH-HHHHH--hcCCCCcccccccCCCCCC
Q 037568 363 AVCCICLAKYVDDDELRELI-CSHVFHVDC-VDKWL--KINASCPLCKSEIGDSSSP 415 (423)
Q Consensus 363 ~eC~ICL~~y~dge~lr~LP-C~H~FH~~C-Id~WL--~~~~tCPlCR~~I~~~~~~ 415 (423)
.+|.||-+.-.|..-++-=- |+-.-+-.| ..-|= ..++.||+||.....+...
T Consensus 81 YeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~~~ 137 (140)
T PF05290_consen 81 YECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSSSA 137 (140)
T ss_pred eeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccccc
Confidence 57999999877763222222 787777776 44553 4578999999998776543
No 116
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.72 E-value=4.6 Score=42.78 Aligned_cols=51 Identities=29% Similarity=0.656 Sum_probs=38.6
Q ss_pred CCceeeecccccccCCceEEeccCccccHHHHHHHHhcC--------CCC--cccccccCCCC
Q 037568 361 EDAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKIN--------ASC--PLCKSEIGDSS 413 (423)
Q Consensus 361 ed~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~--------~tC--PlCR~~I~~~~ 413 (423)
.+.+|-||.+.+.. .+..+.|+|.|...|+...|+.+ -+| +-|+..+.+..
T Consensus 69 ~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~ 129 (444)
T KOG1815|consen 69 GDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDT 129 (444)
T ss_pred ccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCce
Confidence 35679999999988 67778899999999999999542 234 45666665543
No 117
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=57.24 E-value=5.6 Score=37.70 Aligned_cols=40 Identities=35% Similarity=0.794 Sum_probs=27.7
Q ss_pred ceeeecccc-----cccCCceEEeccCccccHHHHHHHHhcCCCCccccc
Q 037568 363 AVCCICLAK-----YVDDDELRELICSHVFHVDCVDKWLKINASCPLCKS 407 (423)
Q Consensus 363 ~eC~ICL~~-----y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~ 407 (423)
-.|-||-++ |+.+...+--.|+-+||+.|.. +..||-|..
T Consensus 153 fiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 458888653 4443444445599999999976 267999943
No 118
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.71 E-value=3.9 Score=45.84 Aligned_cols=44 Identities=23% Similarity=0.547 Sum_probs=33.1
Q ss_pred Cceeeeccccccc-C---CceEEeccCccccHHHHHHHHhcCCCCcccc
Q 037568 362 DAVCCICLAKYVD-D---DELRELICSHVFHVDCVDKWLKINASCPLCK 406 (423)
Q Consensus 362 d~eC~ICL~~y~d-g---e~lr~LPC~H~FH~~CId~WL~~~~tCPlCR 406 (423)
+..|+-|+...-. + +.+..+-|+|.||+.|+-.-..+++ |-.|-
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~~ 831 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIES 831 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChhh
Confidence 3469999887652 2 4678889999999999988876666 65553
No 119
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.44 E-value=9.8 Score=39.55 Aligned_cols=47 Identities=28% Similarity=0.533 Sum_probs=37.2
Q ss_pred eeeecccccccCCceEEeccCccccHHHHHHHHhcC---CCCcccccccC
Q 037568 364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKIN---ASCPLCKSEIG 410 (423)
Q Consensus 364 eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~---~tCPlCR~~I~ 410 (423)
.|+|=-+.=.+...-..|.|||+--++=+.+--+.. ..||.|=.+..
T Consensus 336 ~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~ 385 (394)
T KOG2817|consen 336 ICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQL 385 (394)
T ss_pred ecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccC
Confidence 588877776777778999999999999999977543 36999955443
No 120
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=50.31 E-value=5.3 Score=29.36 Aligned_cols=40 Identities=25% Similarity=0.709 Sum_probs=18.3
Q ss_pred eeeecccccccCCceEEeccCccccHHH--HHHHHhcC-----CCCcccccc
Q 037568 364 VCCICLAKYVDDDELRELICSHVFHVDC--VDKWLKIN-----ASCPLCKSE 408 (423)
Q Consensus 364 eC~ICL~~y~dge~lr~LPC~H~FH~~C--Id~WL~~~-----~tCPlCR~~ 408 (423)
.|.|....++. .+|---|.|. +| ++.||+.+ -.||+|+++
T Consensus 4 ~CPls~~~i~~--P~Rg~~C~H~---~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRI--PVRGKNCKHL---QCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SS--EEEETT--SS-----EEHHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEe--CccCCcCccc---ceECHHHHHHHhhccCCeECcCCcCc
Confidence 37776666544 3566668876 45 44677543 259999864
No 121
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=47.99 E-value=16 Score=23.97 Aligned_cols=37 Identities=22% Similarity=0.531 Sum_probs=24.8
Q ss_pred eeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccC
Q 037568 365 CCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIG 410 (423)
Q Consensus 365 C~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~ 410 (423)
|..|-..+.+++.. ...=+..||.+| ..|..|+..+.
T Consensus 2 C~~C~~~i~~~~~~-~~~~~~~~H~~C--------f~C~~C~~~L~ 38 (39)
T smart00132 2 CAGCGKPIRGGELV-LRALGKVWHPEC--------FKCSKCGKPLG 38 (39)
T ss_pred ccccCCcccCCcEE-EEeCCccccccC--------CCCcccCCcCc
Confidence 77787777766332 222478999998 45888877653
No 122
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=47.46 E-value=14 Score=37.41 Aligned_cols=32 Identities=31% Similarity=0.790 Sum_probs=26.1
Q ss_pred eccCccccHHHHHHHHhc---------CCCCcccccccCCC
Q 037568 381 LICSHVFHVDCVDKWLKI---------NASCPLCKSEIGDS 412 (423)
Q Consensus 381 LPC~H~FH~~CId~WL~~---------~~tCPlCR~~I~~~ 412 (423)
-||+|+--.+-+.-|-++ ++.||.|-..+...
T Consensus 376 ~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 376 NPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred CCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 489999999999999855 56899998776543
No 123
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=42.65 E-value=18 Score=40.62 Aligned_cols=45 Identities=20% Similarity=0.462 Sum_probs=31.6
Q ss_pred CceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcc--ccc
Q 037568 362 DAVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPL--CKS 407 (423)
Q Consensus 362 d~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPl--CR~ 407 (423)
.+.|++|-.-.. |..+-.--|+|.=|.+|+.+|+..+.-||. |-.
T Consensus 779 ~~~CtVC~~vi~-G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~~~C~~ 825 (839)
T KOG0269|consen 779 SAKCTVCDLVIR-GVDVWCQVCGHGGHDSHLKSWFFKASPCAKSICPH 825 (839)
T ss_pred hcCceeecceee-eeEeecccccccccHHHHHHHHhcCCCCccccCCc
Confidence 346888865432 222222239999999999999999988887 643
No 125
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=41.68 E-value=8.6 Score=40.04 Aligned_cols=50 Identities=26% Similarity=0.575 Sum_probs=0.0
Q ss_pred Cceeeeccccc--------------ccCCc--eEEeccCccccHHHHHHHHhc---------CCCCcccccccCC
Q 037568 362 DAVCCICLAKY--------------VDDDE--LRELICSHVFHVDCVDKWLKI---------NASCPLCKSEIGD 411 (423)
Q Consensus 362 d~eC~ICL~~y--------------~dge~--lr~LPC~H~FH~~CId~WL~~---------~~tCPlCR~~I~~ 411 (423)
+.+|.+|+..- .|... ..--||+|+--.+...-|-++ ++.||.|-..+..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 56799999652 12211 123489999999999999854 4679999888763
No 126
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=39.45 E-value=13 Score=35.75 Aligned_cols=41 Identities=24% Similarity=0.706 Sum_probs=33.6
Q ss_pred ceeeecccccccCCceEEeccCccccHHHHHHHHhcCCCCccc
Q 037568 363 AVCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLC 405 (423)
Q Consensus 363 ~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlC 405 (423)
..|.+|-+-.-.| +|.=.|+=.+|..|+.+.+.....||.|
T Consensus 182 k~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~~~~cphc 222 (235)
T KOG4718|consen 182 KNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQRRDICPHC 222 (235)
T ss_pred HHHhHhHHHhhee--eccCcccchhhhHHHHHHhcccCcCCch
Confidence 4699998865544 2444588899999999999999999999
No 127
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.31 E-value=17 Score=37.91 Aligned_cols=48 Identities=21% Similarity=0.394 Sum_probs=36.6
Q ss_pred CCCceeeecccccccCCceEEec--cCccccHHHHHHHHhcCCCCccccc
Q 037568 360 GEDAVCCICLAKYVDDDELRELI--CSHVFHVDCVDKWLKINASCPLCKS 407 (423)
Q Consensus 360 ~ed~eC~ICL~~y~dge~lr~LP--C~H~FH~~CId~WL~~~~tCPlCR~ 407 (423)
..-..|.+|--.++-.+....+- |+|.|...|-..|...+..|..|-.
T Consensus 304 ~~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~~r 353 (384)
T KOG1812|consen 304 KRWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYECCR 353 (384)
T ss_pred HhcCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCccc
Confidence 34456999988887666544443 8999999999999999998876643
No 128
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=35.11 E-value=11 Score=27.89 Aligned_cols=14 Identities=29% Similarity=0.952 Sum_probs=7.2
Q ss_pred CCCCcccccccCCC
Q 037568 399 NASCPLCKSEIGDS 412 (423)
Q Consensus 399 ~~tCPlCR~~I~~~ 412 (423)
+..||+|.+++.+.
T Consensus 20 ~~~CPlC~r~l~~e 33 (54)
T PF04423_consen 20 KGCCPLCGRPLDEE 33 (54)
T ss_dssp SEE-TTT--EE-HH
T ss_pred CCcCCCCCCCCCHH
Confidence 34899999988654
No 129
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=33.36 E-value=38 Score=38.19 Aligned_cols=49 Identities=29% Similarity=0.516 Sum_probs=33.0
Q ss_pred cCCCCceeeecccccc----cCCce-----EEec-cCccccHHHHHHHHhcCCCCcccccccC
Q 037568 358 ISGEDAVCCICLAKYV----DDDEL-----RELI-CSHVFHVDCVDKWLKINASCPLCKSEIG 410 (423)
Q Consensus 358 ls~ed~eC~ICL~~y~----dge~l-----r~LP-C~H~FH~~CId~WL~~~~tCPlCR~~I~ 410 (423)
+...+..|+-|-.+|- .|..+ =.-| |+|.-|..=|.+ ..+||+|...+.
T Consensus 1127 i~~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~----y~~CPLCHs~~~ 1185 (1189)
T KOG2041|consen 1127 IDPYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK----YNCCPLCHSMES 1185 (1189)
T ss_pred CCccCCCChhhcCcCceeeccCCccccceEEEccccccccccccccc----cccCccccChhh
Confidence 3455667888877764 23222 1224 999999988766 789999987653
No 130
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=32.77 E-value=8.7 Score=38.56 Aligned_cols=37 Identities=30% Similarity=0.539 Sum_probs=31.3
Q ss_pred eeeecccccccCCceEEeccCccccHHHHHHHHhcCC
Q 037568 364 VCCICLAKYVDDDELRELICSHVFHVDCVDKWLKINA 400 (423)
Q Consensus 364 eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~ 400 (423)
+|.+|+++|+.+.....+-|.-+||..|+-.|++..+
T Consensus 216 vC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (288)
T KOG1729|consen 216 VCDICFEELEKGARGDREDSLPVFHGKCYPNWLTTGA 252 (288)
T ss_pred ecHHHHHHHhcccccchhhcccccccccccccccccc
Confidence 7999999999876666776666999999999997654
No 131
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=32.46 E-value=41 Score=25.07 Aligned_cols=41 Identities=29% Similarity=0.721 Sum_probs=21.0
Q ss_pred eeecccccccCCc------eEEec-cCccccHHHHHHHH-hcCCCCcccc
Q 037568 365 CCICLAKYVDDDE------LRELI-CSHVFHVDCVDKWL-KINASCPLCK 406 (423)
Q Consensus 365 C~ICL~~y~dge~------lr~LP-C~H~FH~~CId~WL-~~~~tCPlCR 406 (423)
|-=|+..|.++.. ..+=| |+++|..+| |... +.=..||-|.
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCCC
Confidence 5567777776532 22334 999999999 5444 3346799884
No 132
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=31.10 E-value=30 Score=26.64 Aligned_cols=16 Identities=38% Similarity=0.875 Sum_probs=11.9
Q ss_pred CCCCcccccccCCCCC
Q 037568 399 NASCPLCKSEIGDSSS 414 (423)
Q Consensus 399 ~~tCPlCR~~I~~~~~ 414 (423)
+..||+||..+.-++.
T Consensus 2 k~~CPlCkt~~n~gsk 17 (61)
T PF05715_consen 2 KSLCPLCKTTLNVGSK 17 (61)
T ss_pred CccCCcccchhhcCCC
Confidence 5689999998855443
No 133
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=29.95 E-value=50 Score=28.81 Aligned_cols=47 Identities=17% Similarity=0.528 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhhhccCCCCCCCchhhHHHH-HHhhhhhhcceeEEEEEe
Q 037568 116 VTVSQIIASIVVLSLSRNENPQAPLFAWIVG-YASGCVATLPILYWRFRN 164 (423)
Q Consensus 116 ~~l~qIva~i~vL~ls~~E~p~~PL~~Wivg-Y~~~c~~~l~l~~~~y~~ 164 (423)
++.+.+.+ .++.+.-..-.|-.|+....++ -.+-|+-+..+++| ||+
T Consensus 37 vT~l~VLv-tii~afvf~~~~p~p~~iffavcI~l~~~s~~lLI~W-YR~ 84 (118)
T PF10856_consen 37 VTSLFVLV-TIISAFVFPQDPPKPLHIFFAVCILLICISAILLIFW-YRQ 84 (118)
T ss_pred HHHHHHHH-HHhheEEecCCCCCceEEehHHHHHHHHHHHHhheee-hhc
Confidence 34444444 3334444566677787766554 44555556655555 654
No 134
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.49 E-value=47 Score=32.73 Aligned_cols=31 Identities=13% Similarity=0.241 Sum_probs=27.1
Q ss_pred ceeeecccccccCCceEEeccCccccHHHHHHHH
Q 037568 363 AVCCICLAKYVDDDELRELICSHVFHVDCVDKWL 396 (423)
Q Consensus 363 ~eC~ICL~~y~dge~lr~LPC~H~FH~~CId~WL 396 (423)
..|+.||..+.+. ...|=+|+|..+||-+.+
T Consensus 44 dcCsLtLqPc~dP---vit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 44 DCCSLTLQPCRDP---VITPDGYLFDREAILEYI 74 (303)
T ss_pred ceeeeecccccCC---ccCCCCeeeeHHHHHHHH
Confidence 4699999999887 566779999999999887
No 135
>PRK05978 hypothetical protein; Provisional
Probab=28.59 E-value=31 Score=31.35 Aligned_cols=25 Identities=20% Similarity=0.525 Sum_probs=20.5
Q ss_pred CccccHHHHHHHHhcCCCCcccccccCCCC
Q 037568 384 SHVFHVDCVDKWLKINASCPLCKSEIGDSS 413 (423)
Q Consensus 384 ~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 413 (423)
+|.|+ .+||.+.+||.|-.+.....
T Consensus 42 G~LF~-----g~Lkv~~~C~~CG~~~~~~~ 66 (148)
T PRK05978 42 GKLFR-----AFLKPVDHCAACGEDFTHHR 66 (148)
T ss_pred Ccccc-----cccccCCCccccCCccccCC
Confidence 47886 89999999999988776553
No 136
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=28.23 E-value=29 Score=26.62 Aligned_cols=15 Identities=40% Similarity=0.917 Sum_probs=9.8
Q ss_pred CCCCcccccccCCCC
Q 037568 399 NASCPLCKSEIGDSS 413 (423)
Q Consensus 399 ~~tCPlCR~~I~~~~ 413 (423)
..+||||+.+...+.
T Consensus 39 ~p~CPlC~s~M~~~~ 53 (59)
T PF14169_consen 39 EPVCPLCKSPMVSGT 53 (59)
T ss_pred CccCCCcCCccccce
Confidence 356777777766554
No 137
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=28.11 E-value=40 Score=34.43 Aligned_cols=50 Identities=18% Similarity=0.380 Sum_probs=37.2
Q ss_pred ceeeecccccccCCceEEec--cCccccHHHHHHHHhcCCCCcccccccCCCC
Q 037568 363 AVCCICLAKYVDDDELRELI--CSHVFHVDCVDKWLKINASCPLCKSEIGDSS 413 (423)
Q Consensus 363 ~eC~ICL~~y~dge~lr~LP--C~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 413 (423)
..|.||-+..... ..-.|| |+|.-|..|...=...+.+||.||++...+.
T Consensus 250 ~s~p~~~~~~~~~-d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~~t 301 (327)
T KOG2068|consen 250 PSCPICYEDLDLT-DSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYERNT 301 (327)
T ss_pred CCCCCCCCccccc-ccccccccccccchhhhhhcccccCCCCCccCCccccCc
Confidence 4699999876322 334555 6788888888888888999999998776553
No 138
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=27.28 E-value=72 Score=30.61 Aligned_cols=32 Identities=28% Similarity=0.429 Sum_probs=19.9
Q ss_pred HHHHHhHHHHHhheeceEEEEccCCCCCCCchhHHHhHHHHHHHHH
Q 037568 233 FKMALDCFFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCI 278 (423)
Q Consensus 233 ~~~~L~~F~liWfIvG~vWi~~~~ss~~daP~Ly~L~IifLaF~~i 278 (423)
+..+++++++|--+ .+-..+|||+|+|+ |-++
T Consensus 8 ~~v~~~l~~cVHav-------------RThqe~YWlfIif~-Fp~i 39 (251)
T COG4700 8 VVVMLELLCCVHAV-------------RTHQERYWLFIIFC-FPVI 39 (251)
T ss_pred HHHHHHHHHHHHHH-------------HhcchHHHHHHHHH-hccc
Confidence 33456666666655 45567899988854 4433
No 139
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=27.06 E-value=37 Score=26.65 Aligned_cols=12 Identities=33% Similarity=1.013 Sum_probs=8.7
Q ss_pred cccHHHHHHHHh
Q 037568 386 VFHVDCVDKWLK 397 (423)
Q Consensus 386 ~FH~~CId~WL~ 397 (423)
-|+..|+.+|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999984
No 140
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=26.41 E-value=28 Score=23.77 Aligned_cols=26 Identities=50% Similarity=0.806 Sum_probs=17.1
Q ss_pred ceeeecccccccCCc--------eEEeccCcccc
Q 037568 363 AVCCICLAKYVDDDE--------LRELICSHVFH 388 (423)
Q Consensus 363 ~eC~ICL~~y~dge~--------lr~LPC~H~FH 388 (423)
.+|.=|...|+.+|+ ++--.|+|.|+
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 358888888886553 23334788875
No 141
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=25.75 E-value=53 Score=23.73 Aligned_cols=40 Identities=18% Similarity=0.491 Sum_probs=24.3
Q ss_pred eeecccccccCCceEEeccCccccHHHHHHHHhcCCCCcccccccCCCC
Q 037568 365 CCICLAKYVDDDELRELICSHVFHVDCVDKWLKINASCPLCKSEIGDSS 413 (423)
Q Consensus 365 C~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~ 413 (423)
|.-|-..+..++.+ ...-+..||.+| -+|=.|+.+|....
T Consensus 1 C~~C~~~I~~~~~~-~~~~~~~~H~~C--------f~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 1 CARCGKPIYGTEIV-IKAMGKFWHPEC--------FKCSKCGKPLNDGD 40 (58)
T ss_dssp BTTTSSBESSSSEE-EEETTEEEETTT--------SBETTTTCBTTTSS
T ss_pred CCCCCCCccCcEEE-EEeCCcEEEccc--------cccCCCCCccCCCe
Confidence 45566666544322 224677788777 46777877776553
No 142
>PRK11827 hypothetical protein; Provisional
Probab=25.56 E-value=23 Score=27.27 Aligned_cols=20 Identities=25% Similarity=0.536 Sum_probs=16.3
Q ss_pred HHHHhcCCCCcccccccCCC
Q 037568 393 DKWLKINASCPLCKSEIGDS 412 (423)
Q Consensus 393 d~WL~~~~tCPlCR~~I~~~ 412 (423)
|+||..--.||+||.++.-.
T Consensus 2 d~~LLeILaCP~ckg~L~~~ 21 (60)
T PRK11827 2 DHRLLEIIACPVCNGKLWYN 21 (60)
T ss_pred ChHHHhheECCCCCCcCeEc
Confidence 67887788899999988654
No 143
>PF05251 UPF0197: Uncharacterised protein family (UPF0197); InterPro: IPR007915 This family of proteins is functionally uncharacterised, but is thought to be a transmembrane protein.
Probab=25.15 E-value=2.4e+02 Score=22.91 Aligned_cols=57 Identities=23% Similarity=0.411 Sum_probs=30.3
Q ss_pred hhhHHHHHHHHHHhHHHHHhheeceEEEEccCCCCCCCchhHHHhHHHHHHHHHHHHHHHHH
Q 037568 225 RLNGLVDHFKMALDCFFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFIL 286 (423)
Q Consensus 225 R~~~l~~~~~~~L~~F~liWfIvG~vWi~~~~ss~~daP~Ly~L~IifLaF~~i~~al~fll 286 (423)
..+.....+-..+.+++..||.+-.+ .++.++....--+.+...+-.+.++...|++
T Consensus 14 ~~~p~La~vll~iGl~fta~Ffiyev-----ts~k~~r~i~kEl~~a~vAS~flGfG~lFLl 70 (77)
T PF05251_consen 14 ALYPHLAVVLLAIGLFFTAWFFIYEV-----TSTKKTRSIAKELLIALVASLFLGFGSLFLL 70 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-----hcCcccccHHHHHHHHHHHHHHHhHHHHHHH
Confidence 35555555667888999999886433 2333333333334444444434444444443
No 144
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=24.80 E-value=21 Score=25.51 Aligned_cols=43 Identities=28% Similarity=0.553 Sum_probs=27.7
Q ss_pred eeecccccccCCceEEeccCccccHHHHHHHHh------cCCCCccccc
Q 037568 365 CCICLAKYVDDDELRELICSHVFHVDCVDKWLK------INASCPLCKS 407 (423)
Q Consensus 365 C~ICL~~y~dge~lr~LPC~H~FH~~CId~WL~------~~~tCPlCR~ 407 (423)
|.||-..-.+++.+.---|+-.||..|++.=.+ ..-.||.|+.
T Consensus 2 C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 2 CPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp BTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred CcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 788888433333333234899999999876542 1346888864
No 145
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.64 E-value=1.2e+02 Score=31.30 Aligned_cols=6 Identities=50% Similarity=0.882 Sum_probs=3.1
Q ss_pred hHHHhH
Q 037568 265 LYRLCI 270 (423)
Q Consensus 265 Ly~L~I 270 (423)
.||++|
T Consensus 218 vyY~si 223 (372)
T KOG2927|consen 218 VYYLSI 223 (372)
T ss_pred eeeeec
Confidence 355555
No 146
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=23.53 E-value=2.6e+02 Score=25.62 Aligned_cols=64 Identities=25% Similarity=0.289 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHhHHHHHhheeceEEEEccC--CCCC-CCchhHHHhHHH-HHHHHHHHHHHHHHHHhh
Q 037568 227 NGLVDHFKMALDCFFAVWFVVGNVWIFGGH--SSPS-DAPKLYRLCIVF-LTFSCIGYAMPFILCATI 290 (423)
Q Consensus 227 ~~l~~~~~~~L~~F~liWfIvG~vWi~~~~--ss~~-daP~Ly~L~Iif-LaF~~i~~al~fll~i~I 290 (423)
..+..+++.+-+...=+..++|-+--.+-+ +... ..|..-++++++ |+..++.|++|+=.++++
T Consensus 55 ~~lr~Rydrlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~ 122 (156)
T PF08372_consen 55 DSLRMRYDRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLI 122 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 345556666666777777777765433221 1111 255555554444 444445566666544433
No 147
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=22.89 E-value=51 Score=27.54 Aligned_cols=30 Identities=30% Similarity=0.598 Sum_probs=22.1
Q ss_pred ceeeecccccccCCceEEec--cCccccHHHHHH
Q 037568 363 AVCCICLAKYVDDDELRELI--CSHVFHVDCVDK 394 (423)
Q Consensus 363 ~eC~ICL~~y~dge~lr~LP--C~H~FH~~CId~ 394 (423)
..|.||-.. .|..++--- |...||..|..+
T Consensus 56 ~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 56 LKCSICGKS--GGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred CcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHH
Confidence 469999998 554444333 788999999765
No 148
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.76 E-value=1.9e+02 Score=24.84 Aligned_cols=22 Identities=23% Similarity=0.464 Sum_probs=16.4
Q ss_pred HHHHHhHHHHHhheeceEEEEc
Q 037568 233 FKMALDCFFAVWFVVGNVWIFG 254 (423)
Q Consensus 233 ~~~~L~~F~liWfIvG~vWi~~ 254 (423)
|-.+...|+++|.+++.+++..
T Consensus 6 Fi~~~~~~~~~Wi~~N~~~~~~ 27 (108)
T PF06210_consen 6 FIIIFTVFLAVWILLNILAPPR 27 (108)
T ss_pred HHHHHHHHHHHHHHHHhhcccc
Confidence 4456778899999988776665
No 149
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=22.71 E-value=91 Score=31.07 Aligned_cols=39 Identities=31% Similarity=0.623 Sum_probs=22.3
Q ss_pred eeecccccccCCceEEec-c-CccccHHHHHHHHh-cCCCCc
Q 037568 365 CCICLAKYVDDDELRELI-C-SHVFHVDCVDKWLK-INASCP 403 (423)
Q Consensus 365 C~ICL~~y~dge~lr~LP-C-~H~FH~~CId~WL~-~~~tCP 403 (423)
|.||++---.|..-.-|+ = .=.=|++|..||=. -|..||
T Consensus 33 ChiCfEl~iegvpks~llHtkSlRGHrdCFEK~HlIanQ~~p 74 (285)
T PF06937_consen 33 CHICFELSIEGVPKSNLLHTKSLRGHRDCFEKYHLIANQDCP 74 (285)
T ss_pred cceeeccccccCccccccccccccchHHHHHHHHHHHcCCCC
Confidence 666655544432222221 1 11458999999965 478899
No 150
>KOG4452 consensus Predicted membrane protein [Function unknown]
Probab=22.07 E-value=3.4e+02 Score=21.51 Aligned_cols=17 Identities=24% Similarity=0.716 Sum_probs=12.7
Q ss_pred HHHHHhHHHHHhheece
Q 037568 233 FKMALDCFFAVWFVVGN 249 (423)
Q Consensus 233 ~~~~L~~F~liWfIvG~ 249 (423)
+-..+.+||..||.+--
T Consensus 24 vLl~iG~fftAwFf~~~ 40 (79)
T KOG4452|consen 24 VLLGIGLFFTAWFFMIQ 40 (79)
T ss_pred HHHHHHHHHHHHHHhee
Confidence 44578899999987643
No 151
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=21.91 E-value=1e+02 Score=35.40 Aligned_cols=30 Identities=13% Similarity=0.240 Sum_probs=17.4
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHhhhccc
Q 037568 265 LYRLCIVFLTFSCIGYAMPFILCATICCCL 294 (423)
Q Consensus 265 Ly~L~IifLaF~~i~~al~fll~i~IcccL 294 (423)
.++..+++.+++++.+++..++++.+|||-
T Consensus 89 ~~~g~~v~~~i~ll~~il~P~vg~~fCcCR 118 (806)
T PF05478_consen 89 YEWGFLVCAVIGLLFIILMPLVGLCFCCCR 118 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 455566666666655444445556777773
No 152
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=21.77 E-value=62 Score=21.45 Aligned_cols=10 Identities=30% Similarity=0.869 Sum_probs=7.2
Q ss_pred cCCCCccccc
Q 037568 398 INASCPLCKS 407 (423)
Q Consensus 398 ~~~tCPlCR~ 407 (423)
....||+|..
T Consensus 16 ~~~~CP~Cg~ 25 (33)
T cd00350 16 APWVCPVCGA 25 (33)
T ss_pred CCCcCcCCCC
Confidence 4458999965
No 153
>PF02326 YMF19: Plant ATP synthase F0; InterPro: IPR003319 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit 8 (or ymf19) found in the F0 complex of mitochondrial F-ATPases from plants and algae. This subunit is sometimes found in association and N-terminal to IPR009455 from INTERPRO, in higher plants. Subunit 8 differs in sequence between plants, Metazoa (IPR001421 from INTERPRO) and fungi (IPR009230 from INTERPRO) [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=21.68 E-value=49 Score=27.17 Aligned_cols=34 Identities=26% Similarity=0.461 Sum_probs=19.3
Q ss_pred chhHHHhHHHHHHHHHHHHHHHHHHHhhhccccchhhhhccccc
Q 037568 263 PKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIRED 306 (423)
Q Consensus 263 P~Ly~L~IifLaF~~i~~al~fll~i~IcccLpcIi~ll~~r~~ 306 (423)
++++|++++|++|-++ ++...+|-+...+..|..
T Consensus 10 sQ~fW~~i~f~~~y~~----------~~~~~lP~i~~~lk~R~~ 43 (86)
T PF02326_consen 10 SQYFWLLIFFFFFYIF----------LVNFILPKISRILKLRSK 43 (86)
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence 4567777776654322 123456666667766543
No 154
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=21.30 E-value=1.5e+02 Score=22.57 Aligned_cols=45 Identities=29% Similarity=0.630 Sum_probs=31.9
Q ss_pred eeecccccccCCceEEecc--CccccHHHHHHHHhcCCCCcccccccCCC
Q 037568 365 CCICLAKYVDDDELRELIC--SHVFHVDCVDKWLKINASCPLCKSEIGDS 412 (423)
Q Consensus 365 C~ICL~~y~dge~lr~LPC--~H~FH~~CId~WL~~~~tCPlCR~~I~~~ 412 (423)
|-.|=.++..+..-..+ | ...|+.+|.+.-| +..||.|-.++.+-
T Consensus 8 CE~C~~dLp~~s~~A~I-CSfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 8 CECCDKDLPPDSPEAYI-CSFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred ccccCCCCCCCCCcceE-EeEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 67777777665422222 5 3679999999976 78899998777653
No 155
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=20.82 E-value=46 Score=21.44 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=10.7
Q ss_pred eeecccccccCCceEEeccCccccHHHH
Q 037568 365 CCICLAKYVDDDELRELICSHVFHVDCV 392 (423)
Q Consensus 365 C~ICL~~y~dge~lr~LPC~H~FH~~CI 392 (423)
|.+|-.....+-..+-..|+-.+|.+|+
T Consensus 3 C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 3 CDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp -TTTS----S--EEE-TTT-----HHHH
T ss_pred CCcCCCcCCCCceEECccCCCccChhcC
Confidence 7778777665334455569999999996
No 156
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=20.63 E-value=2.8e+02 Score=24.49 Aligned_cols=25 Identities=20% Similarity=0.535 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHhHHHHHhheeceEE
Q 037568 227 NGLVDHFKMALDCFFAVWFVVGNVW 251 (423)
Q Consensus 227 ~~l~~~~~~~L~~F~liWfIvG~vW 251 (423)
..++..+-+++.+|+++||..+..|
T Consensus 80 s~v~Nilvsv~~~~~~~~~~~~~~~ 104 (142)
T PF11712_consen 80 STVFNILVSVFAVFFAGWYWAGYSF 104 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555566678888888997777554
No 157
>PF06638 Strabismus: Strabismus protein; InterPro: IPR009539 This family consists of several strabismus (STB) or Van Gogh-like (VANGL) proteins 1 and 2. The exact function of this family is unknown. It is thought, however that STB1 gene and STB2 may be potent tumour suppressor gene candidates [].; GO: 0007275 multicellular organismal development, 0016021 integral to membrane
Probab=20.57 E-value=1.1e+03 Score=25.65 Aligned_cols=61 Identities=18% Similarity=0.094 Sum_probs=30.2
Q ss_pred CcchhhHHHHHHHHHHHHHHhhhhccC------CCCCCCchhhHHHHHHhhhhhhcceeEEEEEecc
Q 037568 106 SGLWISVELIVTVSQIIASIVVLSLSR------NENPQAPLFAWIVGYASGCVATLPILYWRFRNRH 166 (423)
Q Consensus 106 s~~~i~lel~~~l~qIva~i~vL~ls~------~E~p~~PL~~WivgY~~~c~~~l~l~~~~y~~r~ 166 (423)
.-+|..+-.++.++=++.-|++|+|-+ -+.|.+.=.--++.-|+--++=+.-.|.-|.|+.
T Consensus 90 r~l~~~~~~~L~l~aflSPiaflvLP~il~~~~~~~C~~~CeGllislafKLliLlig~WAlf~R~~ 156 (505)
T PF06638_consen 90 RYLGLILASILGLLAFLSPIAFLVLPKILWRWQLEPCGAECEGLLISLAFKLLILLIGTWALFFRRP 156 (505)
T ss_pred eeHHHHHHHHHHHHHHHhhHHHHHhcccccCccccccCCcccceeHHHHHHHHHHHHHHHHHhcCcc
Confidence 355666666666666666667777642 2355544333344444433322222233355443
No 158
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=20.00 E-value=53 Score=20.91 Aligned_cols=10 Identities=40% Similarity=1.145 Sum_probs=5.0
Q ss_pred CCcccccccC
Q 037568 401 SCPLCKSEIG 410 (423)
Q Consensus 401 tCPlCR~~I~ 410 (423)
+||-|.+.|.
T Consensus 2 ~CP~C~~~V~ 11 (26)
T PF10571_consen 2 TCPECGAEVP 11 (26)
T ss_pred cCCCCcCCch
Confidence 4555555443
Done!