BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037571
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 66/172 (38%), Gaps = 62/172 (36%)
Query: 5 ASAFVINTYIHIGP--LHEIHESGIRECSPSVSTSGVL---------RKEDKSCMTWLDL 53
A ++NT+ + P + + E G+ + P V G L + E+ C+ WLD
Sbjct: 207 AEGILVNTFFELEPNAIKALQEPGLDK--PPVYPVGPLVNIGKQEAKQTEESECLKWLDN 264
Query: 54 QPSRSVLYVKSGIG---------------------------------------------- 67
QP SVLYV G G
Sbjct: 265 QPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDP 324
Query: 68 --LIPTELEEGTQERRLMID-WAPQEDVLAHQAICGFLTHSGWNSASDGMVN 116
+P E T++R +I WAPQ VLAH + GFLTH GWNS + +V+
Sbjct: 325 LTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVS 376
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 90/231 (38%), Gaps = 62/231 (26%)
Query: 3 IRASAFVINTYIHIGPLHEIHESGIRECSPSV----STSGVLRKEDKSCMTWLDLQPSRS 58
I A + I + IGPL + + +P + S L KED C+ WL+ + S
Sbjct: 242 INALSSTIPSIYPIGPLPSLLKQ-----TPQIHQLDSLDSNLWKEDTECLDWLESKEPGS 296
Query: 59 VLYVKSG---------------------------------IG---LIPTELEEGTQERRL 82
V+YV G IG + +E +R L
Sbjct: 297 VVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGL 356
Query: 83 MIDWAPQEDVLAHQAICGFLTHSGWNSASDGM----------------VNSRCVREVGKI 126
+ W PQ+ VL H +I GFLTH GWNS ++ + + R + +I
Sbjct: 357 IASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEI 416
Query: 127 GLDMKDTCDRSTVEKLVRNLI-DNKRKEIMEPMDRGATVARDAVKEGGSSF 176
G+++ R + KL+ +I +K K++ + A + + GG S+
Sbjct: 417 GMEIDTNVKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSY 467
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 60/187 (32%)
Query: 48 MTWLDLQPSRSVLYV---KSGIGLIPTELEE---------------GTQERRLMID---- 85
+ WLD QP +SV+++ G+ P+++ E + E+++ +
Sbjct: 267 LKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLE 326
Query: 86 ------------WAPQEDVLAHQAICGFLTHSGWNSASDGM----------------VNS 117
WAPQ +VLAH+AI GF++H GWNS + M +N+
Sbjct: 327 WMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNA 386
Query: 118 -RCVREVGKIGLDMK-------DTCDRSTVEKLVRNLIDNKRKEIMEPMDRGATVARDAV 169
R V+E G +GL ++ D +EK +++L+D K + + + ++R+AV
Sbjct: 387 FRLVKEWG-VGLGLRVDYRKGSDVVAAEEIEKGLKDLMD-KDSIVHKKVQEMKEMSRNAV 444
Query: 170 KEGGSSF 176
+GGSS
Sbjct: 445 VDGGSSL 451
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 60/187 (32%)
Query: 48 MTWLDLQPSRSVLYV---KSGIGLIPTELEE---------------GTQERRLMID---- 85
+ WLD QP +SV+++ G+ P+++ E + E+++ +
Sbjct: 267 LKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLE 326
Query: 86 ------------WAPQEDVLAHQAICGFLTHSGWNSASDGM----------------VNS 117
WAPQ +VLAH+AI GF++H GWNS + M +N+
Sbjct: 327 WMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNA 386
Query: 118 -RCVREVGKIGLDMK-------DTCDRSTVEKLVRNLIDNKRKEIMEPMDRGATVARDAV 169
R V+E G +GL ++ D +EK +++L+D K + + + ++R+AV
Sbjct: 387 FRLVKEWG-VGLGLRVDYRKGSDVVAAEEIEKGLKDLMD-KDSIVHKKVQEMKEMSRNAV 444
Query: 170 KEGGSSF 176
+GGSS
Sbjct: 445 VDGGSSL 451
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 68/170 (40%), Gaps = 61/170 (35%)
Query: 10 INTYIHIGPLHEIHESGIRECSPSVSTSGVLRKEDKSCMTWLDLQPSRSVLYVKSGIGLI 69
+ TY++IGP + I + +T+G C+ WL + SV+Y+ G
Sbjct: 237 LKTYLNIGPFNLITPPPVVP-----NTTG--------CLQWLKERKPTSVVYISFGTVTT 283
Query: 70 P----------------------------TELEEGTQERR----LMIDWAPQEDVLAHQA 97
P L EG E+ +++ WAPQ +VLAH+A
Sbjct: 284 PPPAEVVALSEALEASRVPFIWSLRDKARVHLPEGFLEKTRGYGMVVPWAPQAEVLAHEA 343
Query: 98 ICGFLTHSGWNS----------------ASDGMVNSRCVREVGKIGLDMK 131
+ F+TH GWNS D +N R V +V +IG+ ++
Sbjct: 344 VGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIE 393
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 37/149 (24%)
Query: 4 RASAFVINTYIHIGPLHEIHESG----IRECSP-SVSTSGVLRKEDKSCMTWLDLQPSRS 58
RA+A IN++ I PL E + + P +++T ++ C+ WLD + S
Sbjct: 215 RANAVAINSFATIHPLIENELNSKFKLLLNVGPFNLTTPQRKVSDEHGCLEWLDQHENSS 274
Query: 59 VLYVKSGIGLIPTELE--------------------------------EGTQERRLMIDW 86
V+Y+ G + P E E T+ + ++ W
Sbjct: 275 VVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGDPKEKLPKGFLERTKTKGKIVAW 334
Query: 87 APQEDVLAHQAICGFLTHSGWNSASDGMV 115
APQ ++L H ++ FLTHSGWNS + +V
Sbjct: 335 APQVEILKHSSVGVFLTHSGWNSVLECIV 363
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 9 VINTYIHIG--PLHEIHESGIRECSPSVSTSGVLRKEDKSCMTWLDLQPSRSVLYVKSG 65
V+ +IHI PLH I +G+RE S V G+ R W +++ + VL++ G
Sbjct: 45 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIER-------AWQEIEQADRVLFMVDG 96
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 9 VINTYIHIG--PLHEIHESGIRECSPSVSTSGVLRKEDKSCMTWLDLQPSRSVLYVKSG 65
V+ +IHI PLH I +G+RE S V G+ R W +++ + VL++ G
Sbjct: 42 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIER-------AWQEIEQADRVLFMVDG 93
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 83 MIDWAPQEDVLAHQAICGFLTHSGWN 108
+ W PQ D+L H F+TH G N
Sbjct: 72 LYKWIPQNDLLGHPKTRAFITHGGAN 97
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
Length = 172
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 9 VINTYIHI--GPLHEIHESGIRECSPSVSTSGVLRKEDKSCMTWLDLQPSRSVLYVKSG 65
V+ +IHI PLH I +G+RE S V G+ R W +++ + VL+ G
Sbjct: 42 VLREHIHIDGXPLHIIDTAGLREASDEVERIGIER-------AWQEIEQADRVLFXVDG 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,362,791
Number of Sequences: 62578
Number of extensions: 212116
Number of successful extensions: 455
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 441
Number of HSP's gapped (non-prelim): 16
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)