BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037573
         (357 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
           Iii Effector Xcv3220 (Xopl)
          Length = 328

 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 10/120 (8%)

Query: 114 STTSVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMF 173
           S  + I  L  LK L++ +   L  L  A+H L  L E+ + GCT L ++        +F
Sbjct: 197 SLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNY------PPIF 249

Query: 174 AIITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVI 233
                 + +++  C NL  LP ++H+L++L+++++R C +L   P        L A C+I
Sbjct: 250 GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL---IAQLPANCII 306



 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 7/166 (4%)

Query: 117 SVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSF-LELSSVAEMFAI 175
           + I  L RL+ L +  C  L  LP+ L    +  E    G   L S  LE + +  + A 
Sbjct: 144 ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ--GLVNLQSLRLEWTGIRSLPAS 201

Query: 176 ITSFENIMVNGCDN--LKCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVI 233
           I + +N+      N  L  L   +H L +L+++++R C +L ++P        L  + + 
Sbjct: 202 IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261

Query: 234 NCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPE--NDYPTNLTIL 277
           +C  L  L   IHRLT  ++L +  C  +  +P      P N  IL
Sbjct: 262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307



 Score = 40.0 bits (92), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 87/213 (40%), Gaps = 33/213 (15%)

Query: 136 LVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPH 195
           L   P     LS L   T+          EL    + FA + +    +    + L+ LP 
Sbjct: 93  LPQFPDQAFRLSHLQHXTIDAA----GLXELPDTXQQFAGLET----LTLARNPLRALPA 144

Query: 196 ELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTA--VCVINCEKLEALLNGIHRLTSHQQ 253
            +  L+RL+++ IR CP L   PE  L ST+ +     ++N + L     GI  L     
Sbjct: 145 SIASLNRLRELSIRACPELTELPE-PLASTDASGEHQGLVNLQSLRLEWTGIRSL----- 198

Query: 254 LTVEQCPGIVAIPENDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMIS 313
                 P  +A  +     NL  LKI +  +  S     +H L  L+EL + G    + +
Sbjct: 199 ------PASIANLQ-----NLKSLKIRNSPL--SALGPAIHHLPKLEELDLRG-CTALRN 244

Query: 314 FPQEEIGSTSLTRLWIRDFQNLEYISSTVLDLH 346
           +P    G   L RL ++D  NL  +    LD+H
Sbjct: 245 YPPIFGGRAPLKRLILKDCSNLLTLP---LDIH 274


>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
 pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
 pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
 pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
          Length = 477

 Score = 30.4 bits (67), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/119 (22%), Positives = 58/119 (48%), Gaps = 8/119 (6%)

Query: 118 VIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIIT 177
           + Q L  LK LE+ D + +    +A   L+SL ++T+  C   ++ +   +++ +  +I 
Sbjct: 123 MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN--LTSIPTEALSHLHGLIV 180

Query: 178 -SFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINC 235
               ++ +N   +     +   +L RL+ +EI + P L +     L   NLT++ + +C
Sbjct: 181 LRLRHLNINAIRD-----YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,864,565
Number of Sequences: 62578
Number of extensions: 371697
Number of successful extensions: 850
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 841
Number of HSP's gapped (non-prelim): 18
length of query: 357
length of database: 14,973,337
effective HSP length: 100
effective length of query: 257
effective length of database: 8,715,537
effective search space: 2239893009
effective search space used: 2239893009
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)