Query 037573
Match_columns 357
No_of_seqs 186 out of 2547
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 13:40:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037573.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037573hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.9 2.6E-21 5.7E-26 204.6 16.0 271 50-339 589-910 (1153)
2 PLN03210 Resistant to P. syrin 99.8 2.2E-20 4.8E-25 197.6 17.2 221 117-352 628-907 (1153)
3 PLN00113 leucine-rich repeat r 99.7 1.5E-17 3.3E-22 174.8 12.5 272 47-330 90-364 (968)
4 PLN00113 leucine-rich repeat r 99.7 2.2E-17 4.8E-22 173.5 12.3 206 119-331 208-437 (968)
5 KOG0472 Leucine-rich repeat pr 99.5 7.6E-17 1.6E-21 144.4 -13.3 193 119-331 110-306 (565)
6 KOG0444 Cytoskeletal regulator 99.4 7.8E-15 1.7E-19 138.2 -1.6 157 176-338 196-378 (1255)
7 KOG0472 Leucine-rich repeat pr 99.4 2.8E-14 6E-19 128.1 -0.4 255 64-333 197-539 (565)
8 KOG4194 Membrane glycoprotein 99.4 2E-13 4.4E-18 127.8 2.7 147 176-330 292-447 (873)
9 KOG4194 Membrane glycoprotein 99.3 3E-13 6.6E-18 126.7 2.7 177 123-314 173-356 (873)
10 KOG0617 Ras suppressor protein 99.2 2.4E-13 5.3E-18 108.9 -5.4 160 119-290 29-190 (264)
11 KOG4658 Apoptotic ATPase [Sign 99.2 6.1E-12 1.3E-16 128.3 3.2 86 119-211 567-652 (889)
12 KOG0444 Cytoskeletal regulator 99.2 5.2E-13 1.1E-17 126.1 -4.4 249 48-316 124-380 (1255)
13 PRK15370 E3 ubiquitin-protein 99.2 2.9E-11 6.2E-16 121.6 7.6 179 124-331 242-424 (754)
14 PRK15370 E3 ubiquitin-protein 99.2 9.3E-11 2E-15 118.0 10.7 184 123-338 199-382 (754)
15 KOG0618 Serine/threonine phosp 99.2 4.4E-13 9.6E-18 131.5 -5.9 136 176-318 240-426 (1081)
16 KOG0617 Ras suppressor protein 99.2 6E-13 1.3E-17 106.7 -4.1 160 143-318 29-192 (264)
17 PRK15387 E3 ubiquitin-protein 99.1 2.6E-10 5.7E-15 114.4 11.1 113 202-332 343-455 (788)
18 KOG0618 Serine/threonine phosp 99.1 1.2E-11 2.5E-16 121.7 -0.8 194 123-333 241-487 (1081)
19 PRK15387 E3 ubiquitin-protein 99.1 1E-09 2.2E-14 110.1 12.8 179 123-331 222-411 (788)
20 PRK15386 type III secretion pr 98.9 2E-08 4.3E-13 93.1 10.9 38 178-217 73-110 (426)
21 cd00116 LRR_RI Leucine-rich re 98.8 3.4E-09 7.3E-14 97.3 2.7 39 119-157 77-118 (319)
22 PRK15386 type III secretion pr 98.7 4.3E-08 9.3E-13 91.0 8.4 139 119-281 48-186 (426)
23 KOG4237 Extracellular matrix p 98.7 4.4E-10 9.6E-15 101.2 -6.1 78 226-306 275-355 (498)
24 KOG4658 Apoptotic ATPase [Sign 98.6 1.9E-08 4.1E-13 103.0 3.2 210 122-340 544-788 (889)
25 cd00116 LRR_RI Leucine-rich re 98.6 2E-08 4.4E-13 92.2 2.4 207 119-332 47-288 (319)
26 KOG4341 F-box protein containi 98.5 2.5E-09 5.5E-14 97.0 -5.0 181 123-311 138-333 (483)
27 KOG4341 F-box protein containi 98.3 2.8E-08 6E-13 90.4 -4.0 134 200-334 293-438 (483)
28 KOG0532 Leucine-rich repeat (L 98.3 3.2E-08 7E-13 93.3 -3.9 167 128-313 80-248 (722)
29 KOG1259 Nischarin, modulator o 98.3 1.5E-07 3.3E-12 82.4 0.2 194 119-330 178-407 (490)
30 COG4886 Leucine-rich repeat (L 98.3 1.1E-06 2.3E-11 83.4 5.4 172 119-306 112-286 (394)
31 PF14580 LRR_9: Leucine-rich r 98.3 9.2E-07 2E-11 73.3 4.3 127 119-259 15-150 (175)
32 KOG3207 Beta-tubulin folding c 98.2 2.4E-07 5.2E-12 84.9 0.4 176 119-305 142-334 (505)
33 COG4886 Leucine-rich repeat (L 98.2 1.1E-06 2.3E-11 83.4 4.5 172 143-331 112-286 (394)
34 KOG4237 Extracellular matrix p 98.2 4.9E-08 1.1E-12 88.3 -5.8 209 116-330 84-354 (498)
35 KOG2120 SCF ubiquitin ligase, 98.1 1.6E-07 3.6E-12 82.1 -2.5 176 123-308 185-373 (419)
36 KOG3207 Beta-tubulin folding c 98.1 8.7E-07 1.9E-11 81.3 1.4 180 121-315 119-317 (505)
37 PF14580 LRR_9: Leucine-rich r 98.1 3.2E-06 6.8E-11 70.2 4.1 128 199-340 17-147 (175)
38 KOG2120 SCF ubiquitin ligase, 98.1 4.3E-07 9.3E-12 79.5 -1.6 176 148-332 186-373 (419)
39 KOG0532 Leucine-rich repeat (L 98.0 3.5E-07 7.7E-12 86.4 -2.6 125 119-256 117-241 (722)
40 KOG1259 Nischarin, modulator o 98.0 3.4E-06 7.5E-11 74.0 2.1 192 145-347 180-413 (490)
41 PF13855 LRR_8: Leucine rich r 98.0 1.5E-05 3.2E-10 54.1 4.7 55 250-306 2-58 (61)
42 PF13855 LRR_8: Leucine rich r 97.8 4.1E-05 8.8E-10 51.9 4.8 59 272-333 1-60 (61)
43 PLN03150 hypothetical protein; 97.8 4.7E-05 1E-09 76.3 7.0 109 149-263 420-529 (623)
44 KOG1947 Leucine rich repeat pr 97.6 7.5E-06 1.6E-10 79.4 -1.3 209 121-335 186-414 (482)
45 KOG3665 ZYG-1-like serine/thre 97.5 3.1E-05 6.8E-10 77.8 1.6 79 123-210 122-204 (699)
46 PLN03150 hypothetical protein; 97.5 0.00018 3.8E-09 72.3 6.8 103 179-281 420-524 (623)
47 KOG0531 Protein phosphatase 1, 97.3 5.1E-05 1.1E-09 72.5 -0.1 169 119-306 91-264 (414)
48 KOG1859 Leucine-rich repeat pr 97.1 3.6E-05 7.7E-10 75.2 -4.0 81 225-313 187-268 (1096)
49 KOG1859 Leucine-rich repeat pr 97.1 6.9E-05 1.5E-09 73.3 -2.1 100 176-281 186-288 (1096)
50 PF12799 LRR_4: Leucine Rich r 96.9 0.0012 2.6E-08 41.3 3.5 40 225-266 1-40 (44)
51 KOG0531 Protein phosphatase 1, 96.9 0.00023 4.9E-09 68.0 -0.2 189 122-330 71-263 (414)
52 PF12799 LRR_4: Leucine Rich r 96.9 0.0015 3.2E-08 40.9 3.5 39 177-217 1-39 (44)
53 KOG3665 ZYG-1-like serine/thre 96.9 0.0011 2.3E-08 66.9 4.3 129 121-260 146-286 (699)
54 KOG1947 Leucine rich repeat pr 96.8 9.6E-05 2.1E-09 71.7 -3.6 109 146-262 187-308 (482)
55 KOG1909 Ran GTPase-activating 96.5 0.00054 1.2E-08 61.7 -0.7 181 119-306 88-307 (382)
56 KOG1909 Ran GTPase-activating 96.1 0.00079 1.7E-08 60.6 -1.6 208 119-332 26-280 (382)
57 KOG3864 Uncharacterized conser 95.2 0.0056 1.2E-07 51.2 0.0 84 226-310 102-188 (221)
58 KOG2982 Uncharacterized conser 95.0 0.032 6.9E-07 49.6 4.2 11 176-186 96-106 (418)
59 KOG1644 U2-associated snRNP A' 94.9 0.036 7.9E-07 46.5 4.0 83 226-314 43-128 (233)
60 KOG1644 U2-associated snRNP A' 94.7 0.085 1.8E-06 44.4 5.7 100 201-306 42-149 (233)
61 KOG2982 Uncharacterized conser 94.7 0.034 7.3E-07 49.5 3.5 196 122-339 70-285 (418)
62 KOG2123 Uncharacterized conser 94.2 0.0031 6.7E-08 55.3 -3.9 76 227-306 21-97 (388)
63 PF13306 LRR_5: Leucine rich r 94.0 0.31 6.8E-06 37.8 7.7 32 271-305 80-111 (129)
64 KOG3864 Uncharacterized conser 94.0 0.01 2.3E-07 49.6 -0.9 39 225-263 151-190 (221)
65 KOG4579 Leucine-rich repeat (L 93.9 0.0033 7.1E-08 49.4 -3.8 100 125-234 29-132 (177)
66 KOG4579 Leucine-rich repeat (L 93.4 0.0053 1.1E-07 48.3 -3.4 86 226-317 54-141 (177)
67 PF13306 LRR_5: Leucine rich r 93.4 0.55 1.2E-05 36.3 8.0 100 119-232 8-110 (129)
68 PF00560 LRR_1: Leucine Rich R 92.9 0.053 1.2E-06 28.2 1.0 17 179-196 2-18 (22)
69 KOG2123 Uncharacterized conser 92.9 0.0051 1.1E-07 54.0 -4.7 83 122-215 18-102 (388)
70 PF00560 LRR_1: Leucine Rich R 92.6 0.065 1.4E-06 27.8 1.1 17 227-244 2-18 (22)
71 KOG2739 Leucine-rich acidic nu 91.2 0.16 3.4E-06 44.3 2.5 88 118-211 60-153 (260)
72 KOG2739 Leucine-rich acidic nu 90.7 0.28 6E-06 42.9 3.5 82 176-260 64-154 (260)
73 PF13504 LRR_7: Leucine rich r 90.4 0.19 4.1E-06 24.3 1.3 8 179-186 3-10 (17)
74 COG5238 RNA1 Ran GTPase-activa 87.5 0.23 4.9E-06 43.8 0.8 92 120-211 27-130 (388)
75 smart00367 LRR_CC Leucine-rich 79.1 1.1 2.5E-05 24.0 1.1 15 272-286 2-16 (26)
76 smart00369 LRR_TYP Leucine-ric 74.9 1.9 4E-05 23.1 1.2 19 297-317 2-20 (26)
77 smart00370 LRR Leucine-rich re 74.9 1.9 4E-05 23.1 1.2 19 297-317 2-20 (26)
78 COG5238 RNA1 Ran GTPase-activa 67.2 6.7 0.00015 34.9 3.5 138 119-259 88-252 (388)
79 smart00364 LRR_BAC Leucine-ric 56.9 7.2 0.00016 21.2 1.2 17 298-316 3-19 (26)
80 PF05725 FNIP: FNIP Repeat; I 48.2 33 0.00071 21.0 3.4 12 320-331 32-43 (44)
81 PF13516 LRR_6: Leucine Rich r 35.1 28 0.00062 17.9 1.4 11 147-157 2-12 (24)
82 smart00365 LRR_SD22 Leucine-ri 20.9 69 0.0015 17.3 1.3 10 297-306 2-11 (26)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=2.6e-21 Score=204.57 Aligned_cols=271 Identities=19% Similarity=0.268 Sum_probs=171.1
Q ss_pred ccceEEeeccCCCCCCCCccccccchhHHHhhhcccccccchhhhhh-hccCCccccccccccccCCcccccCCCcccEE
Q 037573 50 SKAWKLIIRTCCSNFNTPSLMFNASMRYKLKDSTTRLQEIDMEKEQL-ILKSNSGERSKKVGQRLSTTSVIQVLCRLKYL 128 (357)
Q Consensus 50 ~~l~~l~l~~c~~~~~~~~l~~l~~L~~l~~~~~~~l~~i~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 128 (357)
.+++.|...++.. ..+|+--...+|+.+.+.++ .++.+......+ .++......+ ..+...+.++.+++|+.|
T Consensus 589 ~~Lr~L~~~~~~l-~~lP~~f~~~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~----~~l~~ip~ls~l~~Le~L 662 (1153)
T PLN03210 589 PKLRLLRWDKYPL-RCMPSNFRPENLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGS----KNLKEIPDLSMATNLETL 662 (1153)
T ss_pred cccEEEEecCCCC-CCCCCcCCccCCcEEECcCc-cccccccccccCCCCCEEECCCC----CCcCcCCccccCCcccEE
Confidence 4578888776543 33333334566666665543 244433222111 1111111111 111222346678888999
Q ss_pred eeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCCccEEEe
Q 037573 129 ELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQIEI 208 (357)
Q Consensus 129 ~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l 208 (357)
++++|..+..+|..++.+++|+.|++++|..+..+|..+. +++|+.|++++|..+..+|.. .++|+.|++
T Consensus 663 ~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~-------l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L 732 (1153)
T PLN03210 663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGIN-------LKSLYRLNLSGCSRLKSFPDI---STNISWLDL 732 (1153)
T ss_pred EecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCC-------CCCCCEEeCCCCCCccccccc---cCCcCeeec
Confidence 9988888888888888888899999988888888887653 667777777777666555532 234444544
Q ss_pred cCCCCCcccCCCC------------------------------CCCCCcceEEeccCCcchhhHhhhccCCcccceeecc
Q 037573 209 RNCPSLVSFPERG------------------------------LPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQ 258 (357)
Q Consensus 209 ~~c~~l~~l~~~~------------------------------~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 258 (357)
+++ .++.+|... ...++|+.|++++|..+..+|..++++++|++|++++
T Consensus 733 ~~n-~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~ 811 (1153)
T PLN03210 733 DET-AIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIEN 811 (1153)
T ss_pred CCC-ccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCC
Confidence 432 233332100 0013667777777766677777777777777777777
Q ss_pred CcCccccCCCCCCCCcceEEecCCCCce--------------------ecccccccccCCccEEEEeccCCCCCcCCCCC
Q 037573 259 CPGIVAIPENDYPTNLTILKITDVNIFK--------------------SLFQWGLHRLNSLKELIVNGEFPDMISFPQEE 318 (357)
Q Consensus 259 c~~l~~l~~~~~~~~L~~L~l~~c~~l~--------------------~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~ 318 (357)
|..++.+|....+++|++|++++|+.+. .+|. .+..+++|++|++.+ |++++.+|...
T Consensus 812 C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~-si~~l~~L~~L~L~~-C~~L~~l~~~~ 889 (1153)
T PLN03210 812 CINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPW-WIEKFSNLSFLDMNG-CNNLQRVSLNI 889 (1153)
T ss_pred CCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChH-HHhcCCCCCEEECCC-CCCcCccCccc
Confidence 7777777665445666666666665543 3333 366788899999998 99999888877
Q ss_pred CCCCCcceEecccCccccccc
Q 037573 319 IGSTSLTRLWIRDFQNLEYIS 339 (357)
Q Consensus 319 ~~~~sL~~L~l~~c~~L~~l~ 339 (357)
..+++|+.+++++|+.|+.+.
T Consensus 890 ~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 890 SKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred ccccCCCeeecCCCccccccc
Confidence 678888889999998888664
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=2.2e-20 Score=197.57 Aligned_cols=221 Identities=22% Similarity=0.381 Sum_probs=175.4
Q ss_pred ccccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccc
Q 037573 117 SVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHE 196 (357)
Q Consensus 117 ~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~ 196 (357)
..+..+++|+.|+++++..+..+|. ++.+++|++|++++|..+..+|..+.+ +++|+.|++++|..++.+|..
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~------L~~L~~L~L~~c~~L~~Lp~~ 700 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQY------LNKLEDLDMSRCENLEILPTG 700 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhc------cCCCCEEeCCCCCCcCccCCc
Confidence 3467789999999999888888886 888999999999999999999987777 899999999999999999987
Q ss_pred cCCCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhh------------------------------c
Q 037573 197 LHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGI------------------------------H 246 (357)
Q Consensus 197 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~------------------------------~ 246 (357)
+ ++++|+.|++++|..+..+|. .. ++|++|++.++. ++.+|..+ .
T Consensus 701 i-~l~sL~~L~Lsgc~~L~~~p~-~~--~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~ 775 (1153)
T PLN03210 701 I-NLKSLYRLNLSGCSRLKSFPD-IS--TNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTM 775 (1153)
T ss_pred C-CCCCCCEEeCCCCCCcccccc-cc--CCcCeeecCCCc-cccccccccccccccccccccchhhccccccccchhhhh
Confidence 6 789999999999998888874 22 378888887754 55555322 1
Q ss_pred cCCcccceeeccCcCccccCCC-CCCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCC---------
Q 037573 247 RLTSHQQLTVEQCPGIVAIPEN-DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQ--------- 316 (357)
Q Consensus 247 ~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~--------- 316 (357)
..++|+.|++++|+.+..+|.. +.+++|+.|++++|+.++.+|.. ..+++|++|++++ |+.+..+|.
T Consensus 776 ~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~--~~L~sL~~L~Ls~-c~~L~~~p~~~~nL~~L~ 852 (1153)
T PLN03210 776 LSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG--INLESLESLDLSG-CSRLRTFPDISTNISDLN 852 (1153)
T ss_pred ccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC--CCccccCEEECCC-CCccccccccccccCEeE
Confidence 1357888899988888888876 55789999999999999988764 2688888898888 877765543
Q ss_pred -----------CCCCCCCcceEecccCcccccccc--------cccccccccCCC
Q 037573 317 -----------EEIGSTSLTRLWIRDFQNLEYISS--------TVLDLHFCNYIP 352 (357)
Q Consensus 317 -----------~~~~~~sL~~L~l~~c~~L~~l~~--------~~~~~~~~~~i~ 352 (357)
.+..+++|++|++.+|++|+.++. +.+++..|..++
T Consensus 853 Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 853 LSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred CCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 334567889999999999988754 234556676654
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.73 E-value=1.5e-17 Score=174.79 Aligned_cols=272 Identities=17% Similarity=0.070 Sum_probs=149.9
Q ss_pred CCcccceEEeeccCCCCCCCCc--cccccchhHHHhhhcccccccchhhhhhhccCCccccccccccccCCcccccCCCc
Q 037573 47 PSTSKAWKLIIRTCCSNFNTPS--LMFNASMRYKLKDSTTRLQEIDMEKEQLILKSNSGERSKKVGQRLSTTSVIQVLCR 124 (357)
Q Consensus 47 ~~~~~l~~l~l~~c~~~~~~~~--l~~l~~L~~l~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 124 (357)
..+++++.|+++++.....+|. +..+++|+.+.+.++.-...++... --.+..+....+... ...+..++.+++
T Consensus 90 ~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~-l~~L~~L~Ls~n~~~---~~~p~~~~~l~~ 165 (968)
T PLN00113 90 FRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS-IPNLETLDLSNNMLS---GEIPNDIGSFSS 165 (968)
T ss_pred hCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccc-cCCCCEEECcCCccc---ccCChHHhcCCC
Confidence 3567899999998864433442 2367788877776654322222211 001111111111000 112445677888
Q ss_pred ccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCCcc
Q 037573 125 LKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQ 204 (357)
Q Consensus 125 L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~ 204 (357)
|++|+++++.....+|..++++++|++|++++|.....+|..+.+ +++|+.|++++|.....+|..++++++|+
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~------l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 239 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ------MKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcC------cCCccEEECcCCccCCcCChhHhcCCCCC
Confidence 888888887665667777888888888888876555556665555 66777777776654455666677777777
Q ss_pred EEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC-CCCCCcceEEecCCC
Q 037573 205 QIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN-DYPTNLTILKITDVN 283 (357)
Q Consensus 205 ~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~ 283 (357)
+|++++|.....+|.....+++|++|++++|.....+|..+..+++|++|++++|.-...+|.. ..+++|+.|+++++
T Consensus 240 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n- 318 (968)
T PLN00113 240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN- 318 (968)
T ss_pred EEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCC-
Confidence 7777765433344432112236666666665544455556666666666666665322233332 22455666666552
Q ss_pred CceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecc
Q 037573 284 IFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIR 330 (357)
Q Consensus 284 ~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~ 330 (357)
.+....+..+..+++|+.|++.+ |.-...+|..+...++|+.|+++
T Consensus 319 ~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~~~~L~~L~Ls 364 (968)
T PLN00113 319 NFTGKIPVALTSLPRLQVLQLWS-NKFSGEIPKNLGKHNNLTVLDLS 364 (968)
T ss_pred ccCCcCChhHhcCCCCCEEECcC-CCCcCcCChHHhCCCCCcEEECC
Confidence 33322222245555555555555 43333444444344455555444
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.72 E-value=2.2e-17 Score=173.54 Aligned_cols=206 Identities=16% Similarity=0.122 Sum_probs=89.5
Q ss_pred ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccC
Q 037573 119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELH 198 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~ 198 (357)
++.+++|+.|+++++.....+|..++.+++|++|++++|.....+|..+.+ +++|+.|++++|.....+|..+.
T Consensus 208 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~------l~~L~~L~L~~n~l~~~~p~~l~ 281 (968)
T PLN00113 208 LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN------LKNLQYLFLYQNKLSGPIPPSIF 281 (968)
T ss_pred HcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhC------CCCCCEEECcCCeeeccCchhHh
Confidence 444455555555544433344444555555555555544322233333333 44455555544433333444444
Q ss_pred CCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC-CCCCCcceE
Q 037573 199 KLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN-DYPTNLTIL 277 (357)
Q Consensus 199 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L 277 (357)
.+++|+.|++++|.....+|.....+++|++|+++++.....+|..+..+++|+.|++++|.....+|.. +..++|+.|
T Consensus 282 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L 361 (968)
T PLN00113 282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVL 361 (968)
T ss_pred hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEE
Confidence 4455555555444322223321111124555555444333334444444445555555443322222221 123344444
Q ss_pred EecCC-----------------------CCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEeccc
Q 037573 278 KITDV-----------------------NIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRD 331 (357)
Q Consensus 278 ~l~~c-----------------------~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~ 331 (357)
+++++ +.+....+..+..+++|+.|++.+ |.--..+|..+..+++|+.|++++
T Consensus 362 ~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~ 437 (968)
T PLN00113 362 DLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD-NSFSGELPSEFTKLPLVYFLDISN 437 (968)
T ss_pred ECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcC-CEeeeECChhHhcCCCCCEEECcC
Confidence 44442 222211122244555666666665 443344555444556666666653
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.45 E-value=7.6e-17 Score=144.36 Aligned_cols=193 Identities=23% Similarity=0.318 Sum_probs=125.1
Q ss_pred ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccC
Q 037573 119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELH 198 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~ 198 (357)
++.+..|+.++++... +..+|++++.+..|..++..+ ..+.++|..+++ +.+|..+++.+ +.+..+|+..-
T Consensus 110 i~s~~~l~~l~~s~n~-~~el~~~i~~~~~l~dl~~~~-N~i~slp~~~~~------~~~l~~l~~~~-n~l~~l~~~~i 180 (565)
T KOG0472|consen 110 IGSLISLVKLDCSSNE-LKELPDSIGRLLDLEDLDATN-NQISSLPEDMVN------LSKLSKLDLEG-NKLKALPENHI 180 (565)
T ss_pred Hhhhhhhhhhhccccc-eeecCchHHHHhhhhhhhccc-cccccCchHHHH------HHHHHHhhccc-cchhhCCHHHH
Confidence 4556666666666643 555666666676777766665 456667766665 66666666666 34566665555
Q ss_pred CCCCccEEEecCCCCCcccCC--CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCC--CCCCc
Q 037573 199 KLSRLQQIEIRNCPSLVSFPE--RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEND--YPTNL 274 (357)
Q Consensus 199 ~l~~L~~L~l~~c~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L 274 (357)
.++.|++|+... .-++.+|+ +++. +|+.|+++. +++..+| .|.++..|++|+++. +.++-+|.+. .++++
T Consensus 181 ~m~~L~~ld~~~-N~L~tlP~~lg~l~--~L~~LyL~~-Nki~~lP-ef~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l 254 (565)
T KOG0472|consen 181 AMKRLKHLDCNS-NLLETLPPELGGLE--SLELLYLRR-NKIRFLP-EFPGCSLLKELHVGE-NQIEMLPAEHLKHLNSL 254 (565)
T ss_pred HHHHHHhcccch-hhhhcCChhhcchh--hhHHHHhhh-cccccCC-CCCccHHHHHHHhcc-cHHHhhHHHHhcccccc
Confidence 567777776554 45566666 3333 677777766 4466666 667777777777755 5666666652 36677
Q ss_pred ceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEeccc
Q 037573 275 TILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRD 331 (357)
Q Consensus 275 ~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~ 331 (357)
..||+++ +.+++.|.. +..+.+|+.|++++ +.+..+|-+.+.+ .|+.|.+.+
T Consensus 255 ~vLDLRd-Nklke~Pde-~clLrsL~rLDlSN--N~is~Lp~sLgnl-hL~~L~leG 306 (565)
T KOG0472|consen 255 LVLDLRD-NKLKEVPDE-ICLLRSLERLDLSN--NDISSLPYSLGNL-HLKFLALEG 306 (565)
T ss_pred eeeeccc-cccccCchH-HHHhhhhhhhcccC--CccccCCcccccc-eeeehhhcC
Confidence 7777777 777777654 66777777788776 7777777666555 555555554
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.44 E-value=7.8e-15 Score=138.22 Aligned_cols=157 Identities=21% Similarity=0.304 Sum_probs=102.0
Q ss_pred cccccEEEeeCCC-CCcccccccCCCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccC-------------------
Q 037573 176 ITSFENIMVNGCD-NLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINC------------------- 235 (357)
Q Consensus 176 l~~L~~L~l~~c~-~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c------------------- 235 (357)
+++|+.|++++.. .+..+|.++-.+.+|..++++ |+++..+|+..+..++|+.|+++++
T Consensus 196 mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS-~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLN 274 (1255)
T KOG0444|consen 196 MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS-ENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLN 274 (1255)
T ss_pred chhhhhhhcccccchhhcCCCchhhhhhhhhcccc-ccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhc
Confidence 4455666665543 234556666666666666666 3555555554333335555555552
Q ss_pred ---CcchhhHhhhccCCcccceeeccCcCc--cccCCC-CCCCCcceEEecCCCCceecccccccccCCccEEEEeccCC
Q 037573 236 ---EKLEALLNGIHRLTSHQQLTVEQCPGI--VAIPEN-DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFP 309 (357)
Q Consensus 236 ---~~l~~l~~~~~~l~~L~~L~l~~c~~l--~~l~~~-~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~ 309 (357)
+.++.+|..+.++++|+.|.+.+ +++ +.+|.+ |-+.+|+.+..++ |.++-+|+ ++..|..|+.|.++ |+
T Consensus 275 lSrNQLt~LP~avcKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPE-glcRC~kL~kL~L~--~N 349 (1255)
T KOG0444|consen 275 LSRNQLTVLPDAVCKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPE-GLCRCVKLQKLKLD--HN 349 (1255)
T ss_pred cccchhccchHHHhhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhc-cccccCch-hhhhhHHHHHhccc--cc
Confidence 22445666666677777776654 333 345544 4466777777777 66765554 58889999999998 59
Q ss_pred CCCcCCCCCCCCCCcceEecccCcccccc
Q 037573 310 DMISFPQEEIGSTSLTRLWIRDFQNLEYI 338 (357)
Q Consensus 310 ~l~~l~~~~~~~~sL~~L~l~~c~~L~~l 338 (357)
.+..+|+.+.+++-|+.|++.+-|+|-.=
T Consensus 350 rLiTLPeaIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 350 RLITLPEAIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred ceeechhhhhhcCCcceeeccCCcCccCC
Confidence 99999999988999999999988777553
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.40 E-value=2.8e-14 Score=128.10 Aligned_cols=255 Identities=19% Similarity=0.205 Sum_probs=157.2
Q ss_pred CCCCccccccchhHHHhhhcccccccchhhhhhhccCCccccccccccccCCcccccCCCcccEEeeccCcCcccccccc
Q 037573 64 FNTPSLMFNASMRYKLKDSTTRLQEIDMEKEQLILKSNSGERSKKVGQRLSTTSVIQVLCRLKYLELIDCECLVNLPQAL 143 (357)
Q Consensus 64 ~~~~~l~~l~~L~~l~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~ 143 (357)
..+|.++.+..|..++.... +++.++...+..-++++...... .+.++ ..-...++++..|++.++ .++++|+++
T Consensus 197 tlP~~lg~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~N~--i~~lp-ae~~~~L~~l~vLDLRdN-klke~Pde~ 271 (565)
T KOG0472|consen 197 TLPPELGGLESLELLYLRRN-KIRFLPEFPGCSLLKELHVGENQ--IEMLP-AEHLKHLNSLLVLDLRDN-KLKEVPDEI 271 (565)
T ss_pred cCChhhcchhhhHHHHhhhc-ccccCCCCCccHHHHHHHhcccH--HHhhH-HHHhcccccceeeecccc-ccccCchHH
Confidence 44556888888888877664 35555522211112221111110 00000 111346778888888775 477888877
Q ss_pred CCCCCcCEEeecCCCcchhcccccccc--ccccc----------------------------------------------
Q 037573 144 HCLSSLTEITVAGCTKLVSFLELSSVA--EMFAI---------------------------------------------- 175 (357)
Q Consensus 144 ~~l~~L~~L~i~~c~~l~~~~~~~~~L--~~L~~---------------------------------------------- 175 (357)
-.+.+|.+|++++ ..+..+|...+++ +.|..
T Consensus 272 clLrsL~rLDlSN-N~is~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~ 350 (565)
T KOG0472|consen 272 CLLRSLERLDLSN-NDISSLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTL 350 (565)
T ss_pred HHhhhhhhhcccC-CccccCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCC
Confidence 7788888888887 5677777776642 12221
Q ss_pred ----------cccccEEEeeCCCCCcccccccCCCCC---ccEEEecCCCCCcccCC-----------------------
Q 037573 176 ----------ITSFENIMVNGCDNLKCLPHELHKLSR---LQQIEIRNCPSLVSFPE----------------------- 219 (357)
Q Consensus 176 ----------l~~L~~L~l~~c~~l~~lp~~l~~l~~---L~~L~l~~c~~l~~l~~----------------------- 219 (357)
..+.+.|++++ ..+..+|.+...... ....+++. .++.++|.
T Consensus 351 ~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~Vnfsk-NqL~elPk~L~~lkelvT~l~lsnn~isfv~ 428 (565)
T KOG0472|consen 351 PSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSK-NQLCELPKRLVELKELVTDLVLSNNKISFVP 428 (565)
T ss_pred CCCcccchhhhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEeccc-chHhhhhhhhHHHHHHHHHHHhhcCccccch
Confidence 22334444433 223333333221111 22222222 12222222
Q ss_pred ---CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC-CCCCCcceEEecCCCCceecccccccc
Q 037573 220 ---RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN-DYPTNLTILKITDVNIFKSLFQWGLHR 295 (357)
Q Consensus 220 ---~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~~~~~~l~~ 295 (357)
..+ ++|..|++++ +.+.++|..++.+..||.|+++. +++..+|.. ..+..++++-.++ +++..+++.++..
T Consensus 429 ~~l~~l--~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~-NrFr~lP~~~y~lq~lEtllas~-nqi~~vd~~~l~n 503 (565)
T KOG0472|consen 429 LELSQL--QKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSF-NRFRMLPECLYELQTLETLLASN-NQIGSVDPSGLKN 503 (565)
T ss_pred HHHHhh--hcceeeeccc-chhhhcchhhhhhhhhheecccc-cccccchHHHhhHHHHHHHHhcc-ccccccChHHhhh
Confidence 122 4788888866 55788888888888899999987 477777765 3355666666666 7888888888999
Q ss_pred cCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCc
Q 037573 296 LNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQ 333 (357)
Q Consensus 296 l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~ 333 (357)
+.+|.+|++.+ +++..+|...+.+++|++|.+++=|
T Consensus 504 m~nL~tLDL~n--Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 504 MRNLTTLDLQN--NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhhcceeccCC--CchhhCChhhccccceeEEEecCCc
Confidence 99999999997 9999999999999999999998743
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.37 E-value=2e-13 Score=127.84 Aligned_cols=147 Identities=16% Similarity=0.243 Sum_probs=108.7
Q ss_pred cccccEEEeeCCCCCccc-ccccCCCCCccEEEecCCCCCcccCCCCCC-CCCcceEEeccCCcchhhHh-hhccCCccc
Q 037573 176 ITSFENIMVNGCDNLKCL-PHELHKLSRLQQIEIRNCPSLVSFPERGLP-STNLTAVCVINCEKLEALLN-GIHRLTSHQ 252 (357)
Q Consensus 176 l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~l~~~~~~-~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~ 252 (357)
++.|+.|+++.+ .+..+ ++++...++|+.|++++ +.+..++++.+. ...|++|.+++ +.+..+.+ .+..+++|+
T Consensus 292 Lt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e~af~~lssL~ 368 (873)
T KOG4194|consen 292 LTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSH-NSIDHLAEGAFVGLSSLH 368 (873)
T ss_pred cchhhhhccchh-hhheeecchhhhcccceeEeccc-cccccCChhHHHHHHHhhhhcccc-cchHHHHhhHHHHhhhhh
Confidence 778888888874 45544 56666778888888886 678888775443 23788888877 55666654 467788999
Q ss_pred ceeeccCcCcccc------CCCCCCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcce
Q 037573 253 QLTVEQCPGIVAI------PENDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTR 326 (357)
Q Consensus 253 ~L~l~~c~~l~~l------~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~ 326 (357)
.|+++. +.+.-. +..+ +++|++|++.| |+++.++..++..+++|++|++.+ +.+.++....+.+-.|++
T Consensus 369 ~LdLr~-N~ls~~IEDaa~~f~g-l~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~--NaiaSIq~nAFe~m~Lk~ 443 (873)
T KOG4194|consen 369 KLDLRS-NELSWCIEDAAVAFNG-LPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGD--NAIASIQPNAFEPMELKE 443 (873)
T ss_pred hhcCcC-CeEEEEEecchhhhcc-chhhhheeecC-ceeeecchhhhccCcccceecCCC--Ccceeecccccccchhhh
Confidence 998876 333221 1123 78999999999 899999988899999999999998 888888555545668888
Q ss_pred Eecc
Q 037573 327 LWIR 330 (357)
Q Consensus 327 L~l~ 330 (357)
|.+.
T Consensus 444 Lv~n 447 (873)
T KOG4194|consen 444 LVMN 447 (873)
T ss_pred hhhc
Confidence 8766
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.35 E-value=3e-13 Score=126.68 Aligned_cols=177 Identities=17% Similarity=0.272 Sum_probs=90.2
Q ss_pred CcccEEeeccCcCcccccc-ccCCCCCcCEEeecCCCcchhcccccc-ccccccccccccEEEeeCCCCCccc-ccccCC
Q 037573 123 CRLKYLELIDCECLVNLPQ-ALHCLSSLTEITVAGCTKLVSFLELSS-VAEMFAIITSFENIMVNGCDNLKCL-PHELHK 199 (357)
Q Consensus 123 ~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~~-~L~~L~~l~~L~~L~l~~c~~l~~l-p~~l~~ 199 (357)
.++++|+++++. ++.+.. .+..+.+|..|.++. +.+..+|...+ + +++|+.|++.++ .+..+ -..+..
T Consensus 173 ~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~------L~~L~~LdLnrN-~irive~ltFqg 243 (873)
T KOG4194|consen 173 VNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKR------LPKLESLDLNRN-RIRIVEGLTFQG 243 (873)
T ss_pred CCceEEeecccc-ccccccccccccchheeeeccc-CcccccCHHHhhh------cchhhhhhcccc-ceeeehhhhhcC
Confidence 567777776654 344322 355566666666666 45666665443 4 566666666553 22222 122444
Q ss_pred CCCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhH-hhhccCCcccceeeccCcCccccCCC--CCCCCcc
Q 037573 200 LSRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALL-NGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLT 275 (357)
Q Consensus 200 l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~ 275 (357)
+++|+.|.+.. +.+..+..|.+ -+.++++|+++. +.+..+- .++.++++|++|+++. +.+..+... .+.++|+
T Consensus 244 L~Sl~nlklqr-N~I~kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~-NaI~rih~d~WsftqkL~ 320 (873)
T KOG4194|consen 244 LPSLQNLKLQR-NDISKLDDGAFYGLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSY-NAIQRIHIDSWSFTQKLK 320 (873)
T ss_pred chhhhhhhhhh-cCcccccCcceeeecccceeeccc-chhhhhhcccccccchhhhhccch-hhhheeecchhhhcccce
Confidence 55666655554 34444443322 123556666544 2333332 2445555666666655 344444333 3355566
Q ss_pred eEEecCCCCceecccccccccCCccEEEEeccCCCCCcC
Q 037573 276 ILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISF 314 (357)
Q Consensus 276 ~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l 314 (357)
.|+++. |.++.+++.++..+..|++|.+++ +.+..+
T Consensus 321 ~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~--Nsi~~l 356 (873)
T KOG4194|consen 321 ELDLSS-NRITRLDEGSFRVLSQLEELNLSH--NSIDHL 356 (873)
T ss_pred eEeccc-cccccCChhHHHHHHHhhhhcccc--cchHHH
Confidence 666655 555555555555555555555554 444444
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.20 E-value=2.4e-13 Score=108.89 Aligned_cols=160 Identities=19% Similarity=0.251 Sum_probs=100.5
Q ss_pred ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccC
Q 037573 119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELH 198 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~ 198 (357)
+..+.+..+|.++++ ++..+|..+..+.+|+.|++.+ ..++.+|..+.. +++|+.|++.- +.+..+|.+++
T Consensus 29 Lf~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~n-nqie~lp~~iss------l~klr~lnvgm-nrl~~lprgfg 99 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISS------LPKLRILNVGM-NRLNILPRGFG 99 (264)
T ss_pred ccchhhhhhhhcccC-ceeecCCcHHHhhhhhhhhccc-chhhhcChhhhh------chhhhheecch-hhhhcCccccC
Confidence 445567777777775 3666777777777777777776 567777777666 77777777764 45666777777
Q ss_pred CCCCccEEEecCCCCC-cccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC-CCCCCcce
Q 037573 199 KLSRLQQIEIRNCPSL-VSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN-DYPTNLTI 276 (357)
Q Consensus 199 ~l~~L~~L~l~~c~~l-~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~ 276 (357)
.+|-|+.|++....-- .++|...+-++.|+.|++.+ +..+.+|..++++++||.|.+.+ +.+-.+|.+ +-+..|+.
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrd-ndll~lpkeig~lt~lre 177 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRD-NDLLSLPKEIGDLTRLRE 177 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeecc-CchhhCcHHHHHHHHHHH
Confidence 7777777777653211 12333333344566666655 44566666666777777776666 345555554 44556666
Q ss_pred EEecCCCCceeccc
Q 037573 277 LKITDVNIFKSLFQ 290 (357)
Q Consensus 277 L~l~~c~~l~~~~~ 290 (357)
|.+.+ +.++.+|+
T Consensus 178 lhiqg-nrl~vlpp 190 (264)
T KOG0617|consen 178 LHIQG-NRLTVLPP 190 (264)
T ss_pred Hhccc-ceeeecCh
Confidence 66666 55555544
No 11
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.20 E-value=6.1e-12 Score=128.28 Aligned_cols=86 Identities=17% Similarity=0.242 Sum_probs=76.9
Q ss_pred ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccC
Q 037573 119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELH 198 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~ 198 (357)
|..++.|+.|++++|..+.++|..++.|-+||+|++++ +.+..+|.++.+ +.+|.+|++..+..+..+|..+.
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~------Lk~L~~Lnl~~~~~l~~~~~i~~ 639 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGN------LKKLIYLNLEVTGRLESIPGILL 639 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHH------HHhhheeccccccccccccchhh
Confidence 77799999999999999999999999999999999998 689999998887 88999999998887777776666
Q ss_pred CCCCccEEEecCC
Q 037573 199 KLSRLQQIEIRNC 211 (357)
Q Consensus 199 ~l~~L~~L~l~~c 211 (357)
.+++|++|.+...
T Consensus 640 ~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 640 ELQSLRVLRLPRS 652 (889)
T ss_pred hcccccEEEeecc
Confidence 7999999988753
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.20 E-value=5.2e-13 Score=126.12 Aligned_cols=249 Identities=17% Similarity=0.220 Sum_probs=179.4
Q ss_pred CcccceEEeeccCCCCCCCCc-cccccchhHHHhhhcccccccchhhhhh-hccCCcccccc---ccccccCCcccccCC
Q 037573 48 STSKAWKLIIRTCCSNFNTPS-LMFNASMRYKLKDSTTRLQEIDMEKEQL-ILKSNSGERSK---KVGQRLSTTSVIQVL 122 (357)
Q Consensus 48 ~~~~l~~l~l~~c~~~~~~~~-l~~l~~L~~l~~~~~~~l~~i~~~~~~l-~~~~~~~~~~~---~~~~~~~~~~~~~~l 122 (357)
..+++-+|++++......+.+ +.++..|-++.++. .+++.++.+...+ .+.++..+... +.... +..+
T Consensus 124 ~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ------LPsm 196 (1255)
T KOG0444|consen 124 YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ------LPSM 196 (1255)
T ss_pred hhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc------Cccc
Confidence 446788888887653333333 45777777777765 4577777776444 23322211111 01111 2234
Q ss_pred CcccEEeeccCcC-ccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCC
Q 037573 123 CRLKYLELIDCEC-LVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLS 201 (357)
Q Consensus 123 ~~L~~L~l~~~~~-l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~ 201 (357)
+.|+.|.+++... +..+|.++..+.+|+.++++. +++..+|....+ +++|++|+++++ .++.+.-..+...
T Consensus 197 tsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~------l~~LrrLNLS~N-~iteL~~~~~~W~ 268 (1255)
T KOG0444|consen 197 TSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYK------LRNLRRLNLSGN-KITELNMTEGEWE 268 (1255)
T ss_pred hhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhh------hhhhheeccCcC-ceeeeeccHHHHh
Confidence 5666666765432 344888888899999999985 778888877666 889999999984 5777766677778
Q ss_pred CccEEEecCCCCCcccCCCCCCCCCcceEEeccCC-cchhhHhhhccCCcccceeeccCcCccccCCC-CCCCCcceEEe
Q 037573 202 RLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCE-KLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN-DYPTNLTILKI 279 (357)
Q Consensus 202 ~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~-~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l 279 (357)
+|+.|+++. +.++.+|...+..+.|+.|...++. ..+.+|++++++..|+.+...+ +.++-+|++ ..+..|+.|.+
T Consensus 269 ~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L 346 (1255)
T KOG0444|consen 269 NLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKL 346 (1255)
T ss_pred hhhhhcccc-chhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcc
Confidence 899999997 6888899876666689988876533 2368899999999999999987 688888887 44889999999
Q ss_pred cCCCCceecccccccccCCccEEEEeccCCCCCcCCC
Q 037573 280 TDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQ 316 (357)
Q Consensus 280 ~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~ 316 (357)
+. |.+..+|+. +..++.|+.|++.. .+++..-|.
T Consensus 347 ~~-NrLiTLPea-IHlL~~l~vLDlre-NpnLVMPPK 380 (1255)
T KOG0444|consen 347 DH-NRLITLPEA-IHLLPDLKVLDLRE-NPNLVMPPK 380 (1255)
T ss_pred cc-cceeechhh-hhhcCCcceeeccC-CcCccCCCC
Confidence 76 888878764 88899999999998 899877664
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.20 E-value=2.9e-11 Score=121.59 Aligned_cols=179 Identities=21% Similarity=0.326 Sum_probs=85.3
Q ss_pred cccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCCc
Q 037573 124 RLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRL 203 (357)
Q Consensus 124 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L 203 (357)
+|+.|++++|. +..+|..+. .+|+.|++++ +++..+|..+ .++|+.|++++| .+..+|..+. ++|
T Consensus 242 ~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~-N~L~~LP~~l--------~~sL~~L~Ls~N-~Lt~LP~~lp--~sL 306 (754)
T PRK15370 242 TIQEMELSINR-ITELPERLP--SALQSLDLFH-NKISCLPENL--------PEELRYLSVYDN-SIRTLPAHLP--SGI 306 (754)
T ss_pred cccEEECcCCc-cCcCChhHh--CCCCEEECcC-CccCcccccc--------CCCCcEEECCCC-ccccCcccch--hhH
Confidence 45555555543 344444332 3455555553 3444444332 235555555553 3444544332 345
Q ss_pred cEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEEecCCC
Q 037573 204 QQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVN 283 (357)
Q Consensus 204 ~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~ 283 (357)
+.|++++ ..+..+|....+ +|+.|++++|. ++.+|..+. ++|+.|++++| .+..+|. ..+++|+.|++++ +
T Consensus 307 ~~L~Ls~-N~Lt~LP~~l~~--sL~~L~Ls~N~-Lt~LP~~l~--~sL~~L~Ls~N-~L~~LP~-~lp~~L~~LdLs~-N 377 (754)
T PRK15370 307 THLNVQS-NSLTALPETLPP--GLKTLEAGENA-LTSLPASLP--PELQVLDVSKN-QITVLPE-TLPPTITTLDVSR-N 377 (754)
T ss_pred HHHHhcC-CccccCCccccc--cceeccccCCc-cccCChhhc--CcccEEECCCC-CCCcCCh-hhcCCcCEEECCC-C
Confidence 5555554 244444433222 56666665543 445554332 45666666653 4444543 2345666666666 3
Q ss_pred CceecccccccccCCccEEEEeccCCCCCcCCCCCC----CCCCcceEeccc
Q 037573 284 IFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEI----GSTSLTRLWIRD 331 (357)
Q Consensus 284 ~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~----~~~sL~~L~l~~ 331 (357)
.++.+|+. + ..+|+.|++++ +.+..+|..+. ..+++..|++.+
T Consensus 378 ~Lt~LP~~-l--~~sL~~LdLs~--N~L~~LP~sl~~~~~~~~~l~~L~L~~ 424 (754)
T PRK15370 378 ALTNLPEN-L--PAALQIMQASR--NNLVRLPESLPHFRGEGPQPTRIIVEY 424 (754)
T ss_pred cCCCCCHh-H--HHHHHHHhhcc--CCcccCchhHHHHhhcCCCccEEEeeC
Confidence 45544432 1 12456666665 45555554321 124445555543
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.19 E-value=9.3e-11 Score=117.95 Aligned_cols=184 Identities=21% Similarity=0.277 Sum_probs=113.1
Q ss_pred CcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCC
Q 037573 123 CRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSR 202 (357)
Q Consensus 123 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~ 202 (357)
++|+.|+++++ .+..+|..+ .++|++|+++++ .+..+|... .++|+.|++++|. +..+|..+. .+
T Consensus 199 ~~L~~L~Ls~N-~LtsLP~~l--~~nL~~L~Ls~N-~LtsLP~~l--------~~~L~~L~Ls~N~-L~~LP~~l~--s~ 263 (754)
T PRK15370 199 EQITTLILDNN-ELKSLPENL--QGNIKTLYANSN-QLTSIPATL--------PDTIQEMELSINR-ITELPERLP--SA 263 (754)
T ss_pred cCCcEEEecCC-CCCcCChhh--ccCCCEEECCCC-ccccCChhh--------hccccEEECcCCc-cCcCChhHh--CC
Confidence 46777888776 466777644 357888888774 566666543 3467788887753 567776653 46
Q ss_pred ccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEEecCC
Q 037573 203 LQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDV 282 (357)
Q Consensus 203 L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c 282 (357)
|+.|++++ ..+..+|....+ +|+.|++++| .++.+|..+. ++|++|++++ +.+..+|.. .+++|+.|++++
T Consensus 264 L~~L~Ls~-N~L~~LP~~l~~--sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~-N~Lt~LP~~-l~~sL~~L~Ls~- 334 (754)
T PRK15370 264 LQSLDLFH-NKISCLPENLPE--ELRYLSVYDN-SIRTLPAHLP--SGITHLNVQS-NSLTALPET-LPPGLKTLEAGE- 334 (754)
T ss_pred CCEEECcC-CccCccccccCC--CCcEEECCCC-ccccCcccch--hhHHHHHhcC-CccccCCcc-ccccceeccccC-
Confidence 78888874 567777654433 7888888775 4666654332 3566677766 355555532 345677777766
Q ss_pred CCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCcccccc
Q 037573 283 NIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYI 338 (357)
Q Consensus 283 ~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~~L~~l 338 (357)
+.++.++.. + .++|+.|++++ +.+..+|..+ +++|++|+++++ .|+.+
T Consensus 335 N~Lt~LP~~-l--~~sL~~L~Ls~--N~L~~LP~~l--p~~L~~LdLs~N-~Lt~L 382 (754)
T PRK15370 335 NALTSLPAS-L--PPELQVLDVSK--NQITVLPETL--PPTITTLDVSRN-ALTNL 382 (754)
T ss_pred CccccCChh-h--cCcccEEECCC--CCCCcCChhh--cCCcCEEECCCC-cCCCC
Confidence 345555432 2 35677777776 3566666533 456777777665 34444
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.18 E-value=4.4e-13 Score=131.50 Aligned_cols=136 Identities=21% Similarity=0.294 Sum_probs=71.2
Q ss_pred cccccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCccccee
Q 037573 176 ITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLT 255 (357)
Q Consensus 176 l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~ 255 (357)
..+|++++++. ..+..+|++++.+.+|+.+++.. +.++.+|...++..+|+.|.+.. +.++.+|...+.+++|++|+
T Consensus 240 p~nl~~~dis~-n~l~~lp~wi~~~~nle~l~~n~-N~l~~lp~ri~~~~~L~~l~~~~-nel~yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 240 PLNLQYLDISH-NNLSNLPEWIGACANLEALNANH-NRLVALPLRISRITSLVSLSAAY-NELEYIPPFLEGLKSLRTLD 316 (1081)
T ss_pred cccceeeecch-hhhhcchHHHHhcccceEecccc-hhHHhhHHHHhhhhhHHHHHhhh-hhhhhCCCcccccceeeeee
Confidence 44677777776 35677787788788888887765 34444444333332333333322 12233333333333333333
Q ss_pred eccCcCccc---------------------------------------------------cCCCCCCCCcceEEecCCCC
Q 037573 256 VEQCPGIVA---------------------------------------------------IPENDYPTNLTILKITDVNI 284 (357)
Q Consensus 256 l~~c~~l~~---------------------------------------------------l~~~~~~~~L~~L~l~~c~~ 284 (357)
+.. +++.. +|......+|+.|++++ |.
T Consensus 317 L~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-Nr 394 (1081)
T KOG0618|consen 317 LQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NR 394 (1081)
T ss_pred ehh-ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc-cc
Confidence 322 11111 11111235677777777 66
Q ss_pred ceecccccccccCCccEEEEeccCCCCCcCCCCC
Q 037573 285 FKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEE 318 (357)
Q Consensus 285 l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~ 318 (357)
+.++|...+..++.|++|+++| +.|+.+|...
T Consensus 395 L~~fpas~~~kle~LeeL~LSG--NkL~~Lp~tv 426 (1081)
T KOG0618|consen 395 LNSFPASKLRKLEELEELNLSG--NKLTTLPDTV 426 (1081)
T ss_pred cccCCHHHHhchHHhHHHhccc--chhhhhhHHH
Confidence 6666666666677777777776 5666655444
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.18 E-value=6e-13 Score=106.65 Aligned_cols=160 Identities=22% Similarity=0.332 Sum_probs=132.1
Q ss_pred cCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCcccCC--C
Q 037573 143 LHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPE--R 220 (357)
Q Consensus 143 ~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~--~ 220 (357)
+-.+.+...|.+++ .++..+|+.+.. +.+|+.|++++ +.++.+|..++.+++|+.|++.- ..+..+|. +
T Consensus 29 Lf~~s~ITrLtLSH-NKl~~vppnia~------l~nlevln~~n-nqie~lp~~issl~klr~lnvgm-nrl~~lprgfg 99 (264)
T KOG0617|consen 29 LFNMSNITRLTLSH-NKLTVVPPNIAE------LKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGM-NRLNILPRGFG 99 (264)
T ss_pred ccchhhhhhhhccc-CceeecCCcHHH------hhhhhhhhccc-chhhhcChhhhhchhhhheecch-hhhhcCccccC
Confidence 44667788888998 688889988877 89999999998 46899999999999999999984 67777776 4
Q ss_pred CCCCCCcceEEeccCCcc-hhhHhhhccCCcccceeeccCcCccccCCC-CCCCCcceEEecCCCCceecccccccccCC
Q 037573 221 GLPSTNLTAVCVINCEKL-EALLNGIHRLTSHQQLTVEQCPGIVAIPEN-DYPTNLTILKITDVNIFKSLFQWGLHRLNS 298 (357)
Q Consensus 221 ~~~~~~L~~L~l~~c~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~ 298 (357)
.+| .|+.|++..++.- ..+|..+..++.|+-|++++ +.++.+|.. +-+.+|+-|.+++ +.+-++|.. ++.+..
T Consensus 100 s~p--~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrd-ndll~lpke-ig~lt~ 174 (264)
T KOG0617|consen 100 SFP--ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRD-NDLLSLPKE-IGDLTR 174 (264)
T ss_pred CCc--hhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeecc-CchhhCcHH-HHHHHH
Confidence 556 9999999875432 46788888889999999998 578888776 6689999999999 777777765 889999
Q ss_pred ccEEEEeccCCCCCcCCCCC
Q 037573 299 LKELIVNGEFPDMISFPQEE 318 (357)
Q Consensus 299 L~~L~l~~~c~~l~~l~~~~ 318 (357)
|++|++.+ +++..+|.++
T Consensus 175 lrelhiqg--nrl~vlppel 192 (264)
T KOG0617|consen 175 LRELHIQG--NRLTVLPPEL 192 (264)
T ss_pred HHHHhccc--ceeeecChhh
Confidence 99999998 8888877644
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.14 E-value=2.6e-10 Score=114.37 Aligned_cols=113 Identities=24% Similarity=0.331 Sum_probs=65.9
Q ss_pred CccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEEecC
Q 037573 202 RLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITD 281 (357)
Q Consensus 202 ~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~ 281 (357)
+|+.|++++ +.++.+|. .+ .+|+.|++++ +.+..+|.. ..+|+.|++++ +.++.+|. .+++|+.|++++
T Consensus 343 ~Lq~LdLS~-N~Ls~LP~--lp-~~L~~L~Ls~-N~L~~LP~l---~~~L~~LdLs~-N~Lt~LP~--l~s~L~~LdLS~ 411 (788)
T PRK15387 343 GLQELSVSD-NQLASLPT--LP-SELYKLWAYN-NRLTSLPAL---PSGLKELIVSG-NRLTSLPV--LPSELKELMVSG 411 (788)
T ss_pred ccceEecCC-CccCCCCC--CC-cccceehhhc-cccccCccc---ccccceEEecC-CcccCCCC--cccCCCEEEccC
Confidence 556666665 35555553 12 2556665554 334455432 24566777766 35555554 245677777777
Q ss_pred CCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccC
Q 037573 282 VNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDF 332 (357)
Q Consensus 282 c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c 332 (357)
+.++.+|. ...+|+.|++.+ +.+..+|..+..+++|+.|++++.
T Consensus 412 -N~LssIP~----l~~~L~~L~Ls~--NqLt~LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 412 -NRLTSLPM----LPSGLLSLSVYR--NQLTRLPESLIHLSSETTVNLEGN 455 (788)
T ss_pred -CcCCCCCc----chhhhhhhhhcc--CcccccChHHhhccCCCeEECCCC
Confidence 55665542 134566777776 667777776666777777777754
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.09 E-value=1.2e-11 Score=121.73 Aligned_cols=194 Identities=21% Similarity=0.308 Sum_probs=116.0
Q ss_pred CcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCC
Q 037573 123 CRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSR 202 (357)
Q Consensus 123 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~ 202 (357)
.+|++++++... +..+|+.++.+.+|..+.+.. +.+..+|..++. .++|+.|.+..| .++++|.....+.+
T Consensus 241 ~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~-N~l~~lp~ri~~------~~~L~~l~~~~n-el~yip~~le~~~s 311 (1081)
T KOG0618|consen 241 LNLQYLDISHNN-LSNLPEWIGACANLEALNANH-NRLVALPLRISR------ITSLVSLSAAYN-ELEYIPPFLEGLKS 311 (1081)
T ss_pred ccceeeecchhh-hhcchHHHHhcccceEecccc-hhHHhhHHHHhh------hhhHHHHHhhhh-hhhhCCCcccccce
Confidence 577788887753 677777777888888888876 566777766654 455555555553 35555555555555
Q ss_pred ccEEEecCCCCCcccCCCCC----------------------------------------------C----CCCcceEEe
Q 037573 203 LQQIEIRNCPSLVSFPERGL----------------------------------------------P----STNLTAVCV 232 (357)
Q Consensus 203 L~~L~l~~c~~l~~l~~~~~----------------------------------------------~----~~~L~~L~l 232 (357)
|+.|++.. .++..+|...+ | +.+|+.|++
T Consensus 312 L~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhL 390 (1081)
T KOG0618|consen 312 LRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHL 390 (1081)
T ss_pred eeeeeehh-ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeee
Confidence 55555553 33433333100 0 135555555
Q ss_pred ccCCcchhhHh-hhccCCcccceeeccCcCccccCCC-CCCCCcceEEecCCCCceecccccccccCCccEEEEeccCCC
Q 037573 233 INCEKLEALLN-GIHRLTSHQQLTVEQCPGIVAIPEN-DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPD 310 (357)
Q Consensus 233 ~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~ 310 (357)
+. +.+.++|. .+.++..|++|+++| ++++.+|.. ..+..|++|...+ |.+..+|+ +..++.|+.++++ |++
T Consensus 391 sy-NrL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fPe--~~~l~qL~~lDlS--~N~ 463 (1081)
T KOG0618|consen 391 SY-NRLNSFPASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHS-NQLLSFPE--LAQLPQLKVLDLS--CNN 463 (1081)
T ss_pred cc-cccccCCHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcC-Cceeechh--hhhcCcceEEecc--cch
Confidence 44 33455543 345555666666666 456655543 2355666666555 55665652 5778888888888 588
Q ss_pred CCcCCCCCCCC-CCcceEecccCc
Q 037573 311 MISFPQEEIGS-TSLTRLWIRDFQ 333 (357)
Q Consensus 311 l~~l~~~~~~~-~sL~~L~l~~c~ 333 (357)
+..+--....| |.|++|++++=.
T Consensus 464 L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 464 LSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhhhhhhCCCcccceeeccCCc
Confidence 87653333345 889999888643
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.09 E-value=1e-09 Score=110.13 Aligned_cols=179 Identities=27% Similarity=0.377 Sum_probs=86.6
Q ss_pred CcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccc-----------cccccEEEeeCCCCCc
Q 037573 123 CRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAI-----------ITSFENIMVNGCDNLK 191 (357)
Q Consensus 123 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~-----------l~~L~~L~l~~c~~l~ 191 (357)
++|+.|.+.++ .++.+|. ..++|++|++++ +.+..+|....+|++|.+ +++|+.|+++++ .+.
T Consensus 222 ~~L~~L~L~~N-~Lt~LP~---lp~~Lk~LdLs~-N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N-~Lt 295 (788)
T PRK15387 222 AHITTLVIPDN-NLTSLPA---LPPELRTLEVSG-NQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGN-QLT 295 (788)
T ss_pred cCCCEEEccCC-cCCCCCC---CCCCCcEEEecC-CccCcccCcccccceeeccCCchhhhhhchhhcCEEECcCC-ccc
Confidence 36777777765 3666665 256777777776 356666654323333221 234555555553 344
Q ss_pred ccccccCCCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCC
Q 037573 192 CLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYP 271 (357)
Q Consensus 192 ~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 271 (357)
.+|.. +++|+.|+++++ .+..+|. .+ .+|+.|++++| .++.+|. ...+|++|++++ +.++.+|. .+
T Consensus 296 ~LP~~---p~~L~~LdLS~N-~L~~Lp~--lp-~~L~~L~Ls~N-~L~~LP~---lp~~Lq~LdLS~-N~Ls~LP~--lp 361 (788)
T PRK15387 296 SLPVL---PPGLQELSVSDN-QLASLPA--LP-SELCKLWAYNN-QLTSLPT---LPSGLQELSVSD-NQLASLPT--LP 361 (788)
T ss_pred ccccc---ccccceeECCCC-ccccCCC--Cc-ccccccccccC-ccccccc---cccccceEecCC-CccCCCCC--CC
Confidence 44432 245666666553 4444443 11 24444554442 2333432 113456666655 34555543 23
Q ss_pred CCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEeccc
Q 037573 272 TNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRD 331 (357)
Q Consensus 272 ~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~ 331 (357)
.+|+.|++++ +.++.++. ..++|+.|++++ +.+..+|. .+++|+.|++++
T Consensus 362 ~~L~~L~Ls~-N~L~~LP~----l~~~L~~LdLs~--N~Lt~LP~---l~s~L~~LdLS~ 411 (788)
T PRK15387 362 SELYKLWAYN-NRLTSLPA----LPSGLKELIVSG--NRLTSLPV---LPSELKELMVSG 411 (788)
T ss_pred cccceehhhc-cccccCcc----cccccceEEecC--CcccCCCC---cccCCCEEEccC
Confidence 4455555544 34443332 123455555554 34555543 234455555444
No 20
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.85 E-value=2e-08 Score=93.12 Aligned_cols=38 Identities=24% Similarity=0.680 Sum_probs=18.2
Q ss_pred cccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCccc
Q 037573 178 SFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSF 217 (357)
Q Consensus 178 ~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l 217 (357)
+|+.|.+++|..+..+|..+ .++|++|.+++|..+..+
T Consensus 73 sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL 110 (426)
T ss_pred CCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc
Confidence 45555555555554444433 134555555555444433
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.76 E-value=3.4e-09 Score=97.35 Aligned_cols=39 Identities=28% Similarity=0.270 Sum_probs=18.1
Q ss_pred ccCCCcccEEeeccCcCccccccccCCC---CCcCEEeecCC
Q 037573 119 IQVLCRLKYLELIDCECLVNLPQALHCL---SSLTEITVAGC 157 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l---~~L~~L~i~~c 157 (357)
+..+++|++|++++|......+..+..+ ++|++|++++|
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~ 118 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNN 118 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCC
Confidence 3445566666666554332222222222 23666666554
No 22
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.72 E-value=4.3e-08 Score=90.96 Aligned_cols=139 Identities=22% Similarity=0.383 Sum_probs=92.3
Q ss_pred ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccC
Q 037573 119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELH 198 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~ 198 (357)
+..+.+++.|++++| .+..+|. --.+|+.|.+++|..+..+|..+ .++|+.|++++|..+..+|..
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--------P~nLe~L~Ls~Cs~L~sLP~s-- 113 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--------PEGLEKLTVCHCPEISGLPES-- 113 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--------hhhhhheEccCcccccccccc--
Confidence 445689999999999 6888883 23469999999999998888643 569999999999888888754
Q ss_pred CCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEE
Q 037573 199 KLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILK 278 (357)
Q Consensus 199 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~ 278 (357)
|+.|++.+ .....+ ..+| ++|+.|.+.++......+....-.++|++|++++|..+. +| ..+|.+|+.|.
T Consensus 114 ----Le~L~L~~-n~~~~L--~~LP-ssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP-~~LP~SLk~L~ 183 (426)
T PRK15386 114 ----VRSLEIKG-SATDSI--KNVP-NGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LP-EKLPESLQSIT 183 (426)
T ss_pred ----cceEEeCC-CCCccc--ccCc-chHhheeccccccccccccccccCCcccEEEecCCCccc-Cc-ccccccCcEEE
Confidence 56666653 332223 2344 378888875533221110000112578888888876443 34 23567888888
Q ss_pred ecC
Q 037573 279 ITD 281 (357)
Q Consensus 279 l~~ 281 (357)
++.
T Consensus 184 ls~ 186 (426)
T PRK15386 184 LHI 186 (426)
T ss_pred ecc
Confidence 765
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.66 E-value=4.4e-10 Score=101.21 Aligned_cols=78 Identities=18% Similarity=0.220 Sum_probs=49.5
Q ss_pred CcceEEeccCCcchhh-HhhhccCCcccceeeccCcCccccCCCCC--CCCcceEEecCCCCceecccccccccCCccEE
Q 037573 226 NLTAVCVINCEKLEAL-LNGIHRLTSHQQLTVEQCPGIVAIPENDY--PTNLTILKITDVNIFKSLFQWGLHRLNSLKEL 302 (357)
Q Consensus 226 ~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L 302 (357)
+|+.|++++ +.++.+ +.++.+..+++.|.+.+ ++++.+....+ +..|++|++++ |+++.+.+..+..+.+|.+|
T Consensus 275 ~L~~lnlsn-N~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~~aF~~~~~l~~l 351 (498)
T KOG4237|consen 275 NLRKLNLSN-NKITRIEDGAFEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYD-NQITTVAPGAFQTLFSLSTL 351 (498)
T ss_pred cceEeccCC-CccchhhhhhhcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecC-CeeEEEecccccccceeeee
Confidence 777777755 445554 33566677777777766 56665554432 56677777777 66776666556666777777
Q ss_pred EEec
Q 037573 303 IVNG 306 (357)
Q Consensus 303 ~l~~ 306 (357)
++-.
T Consensus 352 ~l~~ 355 (498)
T KOG4237|consen 352 NLLS 355 (498)
T ss_pred ehcc
Confidence 7654
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.61 E-value=1.9e-08 Score=103.04 Aligned_cols=210 Identities=18% Similarity=0.186 Sum_probs=138.5
Q ss_pred CCcccEEeeccCcC-cccccc-ccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCC
Q 037573 122 LCRLKYLELIDCEC-LVNLPQ-ALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHK 199 (357)
Q Consensus 122 l~~L~~L~l~~~~~-l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~ 199 (357)
.++|+.|-+.+... +..++. .+..++.|+.|++++|.++..+|..++. +-+|++|+++++ .+..+|.++++
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~------Li~LryL~L~~t-~I~~LP~~l~~ 616 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE------LVHLRYLDLSDT-GISHLPSGLGN 616 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh------hhhhhcccccCC-CccccchHHHH
Confidence 45788888877653 445444 3777999999999999999999999988 999999999985 68899999999
Q ss_pred CCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCC-cc-hhhHhhhccCCcccceeeccCcC----------------
Q 037573 200 LSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCE-KL-EALLNGIHRLTSHQQLTVEQCPG---------------- 261 (357)
Q Consensus 200 l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~-~l-~~l~~~~~~l~~L~~L~l~~c~~---------------- 261 (357)
+..|.+|++.....+..++.....+.+|++|.+..-. .. ...-..+..+.+|+.+.+..++.
T Consensus 617 Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~ 696 (889)
T KOG4658|consen 617 LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLL 696 (889)
T ss_pred HHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHh
Confidence 9999999999887777775433334599999886533 11 11223445666666666654332
Q ss_pred ----------ccccCCCCCCCCcceEEecCCCCceecccc----cccc-cCCccEEEEeccCCCCCcCCCCCCCCCCcce
Q 037573 262 ----------IVAIPENDYPTNLTILKITDVNIFKSLFQW----GLHR-LNSLKELIVNGEFPDMISFPQEEIGSTSLTR 326 (357)
Q Consensus 262 ----------l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~----~l~~-l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~ 326 (357)
.+..+..+.+.+|+.|.+.+|...+....+ .... ++++..+.+.+ |..+..+-.. .++|+|+.
T Consensus 697 ~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~-~~~~r~l~~~-~f~~~L~~ 774 (889)
T KOG4658|consen 697 QSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILN-CHMLRDLTWL-LFAPHLTS 774 (889)
T ss_pred HhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhc-cccccccchh-hccCcccE
Confidence 111111123566777777776554321111 0011 33455555555 5555544322 37889999
Q ss_pred EecccCcccccccc
Q 037573 327 LWIRDFQNLEYISS 340 (357)
Q Consensus 327 L~l~~c~~L~~l~~ 340 (357)
|.+.+|+.++..-.
T Consensus 775 l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 775 LSLVSCRLLEDIIP 788 (889)
T ss_pred EEEecccccccCCC
Confidence 99998888877643
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.59 E-value=2e-08 Score=92.19 Aligned_cols=207 Identities=17% Similarity=0.083 Sum_probs=121.5
Q ss_pred ccCCCcccEEeeccCcCc------cccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCC--
Q 037573 119 IQVLCRLKYLELIDCECL------VNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNL-- 190 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l------~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l-- 190 (357)
+...++++++.++++..- ..++..+..+++|++|++++|..-...+..+..+.. -++|+.|++++|...
T Consensus 47 l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~---~~~L~~L~ls~~~~~~~ 123 (319)
T cd00116 47 LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLR---SSSLQELKLNNNGLGDR 123 (319)
T ss_pred HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhc---cCcccEEEeeCCccchH
Confidence 344567888888775432 224455677889999999987643333333222000 134999999987533
Q ss_pred --cccccccCCC-CCccEEEecCCCCCc----ccCCCCCCCCCcceEEeccCCcc----hhhHhhhccCCcccceeeccC
Q 037573 191 --KCLPHELHKL-SRLQQIEIRNCPSLV----SFPERGLPSTNLTAVCVINCEKL----EALLNGIHRLTSHQQLTVEQC 259 (357)
Q Consensus 191 --~~lp~~l~~l-~~L~~L~l~~c~~l~----~l~~~~~~~~~L~~L~l~~c~~l----~~l~~~~~~l~~L~~L~l~~c 259 (357)
..+...+..+ ++|+.|++++|.-.. .++.....+++|++|++++|.-- ..++..+..+++|++|++++|
T Consensus 124 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 203 (319)
T cd00116 124 GLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN 203 (319)
T ss_pred HHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC
Confidence 1233455566 889999999875321 11111111237999999886532 234445666789999999886
Q ss_pred cCccc-----cCCC-CCCCCcceEEecCCCCceeccccccc-----ccCCccEEEEeccCCCCC-----cCCCCCCCCCC
Q 037573 260 PGIVA-----IPEN-DYPTNLTILKITDVNIFKSLFQWGLH-----RLNSLKELIVNGEFPDMI-----SFPQEEIGSTS 323 (357)
Q Consensus 260 ~~l~~-----l~~~-~~~~~L~~L~l~~c~~l~~~~~~~l~-----~l~~L~~L~l~~~c~~l~-----~l~~~~~~~~s 323 (357)
. +.. +... ...++|++|++++| .++......+. ..+.|++|++.+ | .++ .+.......++
T Consensus 204 ~-i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~-n-~i~~~~~~~l~~~~~~~~~ 279 (319)
T cd00116 204 G-LTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSC-N-DITDDGAKDLAEVLAEKES 279 (319)
T ss_pred c-cChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccC-C-CCCcHHHHHHHHHHhcCCC
Confidence 3 321 1111 22578999999984 45531111111 237899999998 5 443 12222223468
Q ss_pred cceEecccC
Q 037573 324 LTRLWIRDF 332 (357)
Q Consensus 324 L~~L~l~~c 332 (357)
|+++++++.
T Consensus 280 L~~l~l~~N 288 (319)
T cd00116 280 LLELDLRGN 288 (319)
T ss_pred ccEEECCCC
Confidence 888888764
No 26
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.53 E-value=2.5e-09 Score=97.04 Aligned_cols=181 Identities=17% Similarity=0.272 Sum_probs=96.0
Q ss_pred CcccEEeeccCcCccccc--cccCCCCCcCEEeecCCCcchhccccccccccccc-cccccEEEeeCCCCCccccc--cc
Q 037573 123 CRLKYLELIDCECLVNLP--QALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAI-ITSFENIMVNGCDNLKCLPH--EL 197 (357)
Q Consensus 123 ~~L~~L~l~~~~~l~~lp--~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~-l~~L~~L~l~~c~~l~~lp~--~l 197 (357)
..|+.|.+.||.....-+ .....++++..|.+.+|.++....- .++.. +++|+.|++..|..++...- ..
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~-----~sla~~C~~l~~l~L~~c~~iT~~~Lk~la 212 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSL-----LSLARYCRKLRHLNLHSCSSITDVSLKYLA 212 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHH-----HHHHHhcchhhhhhhcccchhHHHHHHHHH
Confidence 467778888887655522 2345678888888888876653211 11111 77888888888776654321 12
Q ss_pred CCCCCccEEEecCCCCCcccCC----CCCCCCCcceEEeccCCcch--hhHhhhccCCcccceeeccCcCccccCC---C
Q 037573 198 HKLSRLQQIEIRNCPSLVSFPE----RGLPSTNLTAVCVINCEKLE--ALLNGIHRLTSHQQLTVEQCPGIVAIPE---N 268 (357)
Q Consensus 198 ~~l~~L~~L~l~~c~~l~~l~~----~~~~~~~L~~L~l~~c~~l~--~l~~~~~~l~~L~~L~l~~c~~l~~l~~---~ 268 (357)
..+++|++|+++.|+.+..-.. .+.. .++.+...||..++ .+-..-.....+..+++..|..+++... .
T Consensus 213 ~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~--~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~ 290 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISGNGVQALQRGCK--ELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIA 290 (483)
T ss_pred HhhhhHHHhhhccCchhhcCcchHHhccch--hhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHh
Confidence 2367888888888877765111 2222 45555555665432 2211122334444555555544443211 0
Q ss_pred CCCCCcceEEecCCCCceeccccccc-ccCCccEEEEeccCCCC
Q 037573 269 DYPTNLTILKITDVNIFKSLFQWGLH-RLNSLKELIVNGEFPDM 311 (357)
Q Consensus 269 ~~~~~L~~L~l~~c~~l~~~~~~~l~-~l~~L~~L~l~~~c~~l 311 (357)
..+..|+.+..++|++++..+.|.++ +.++|+.+.+.+ |.++
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~-c~~f 333 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSG-CQQF 333 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccc-cchh
Confidence 12345555555555555544444332 345555555555 5443
No 27
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.31 E-value=2.8e-08 Score=90.45 Aligned_cols=134 Identities=16% Similarity=0.142 Sum_probs=65.4
Q ss_pred CCCccEEEecCCCCCcccCC--CCCCCCCcceEEeccCCcchhhHh--hhccCCcccceeeccCcCcccc---CCCCCCC
Q 037573 200 LSRLQQIEIRNCPSLVSFPE--RGLPSTNLTAVCVINCEKLEALLN--GIHRLTSHQQLTVEQCPGIVAI---PENDYPT 272 (357)
Q Consensus 200 l~~L~~L~l~~c~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~l---~~~~~~~ 272 (357)
...|+.+..++|..+...+. -+..+++|+.+.+++|..++.... --.++++|+.+++.+|.....- .....++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 34455666666655443322 111123666666666665543311 1134566666666665444322 1112356
Q ss_pred CcceEEecCCCCceeccc----ccccccCCccEEEEeccCCCCCcC-CCCCCCCCCcceEecccCcc
Q 037573 273 NLTILKITDVNIFKSLFQ----WGLHRLNSLKELIVNGEFPDMISF-PQEEIGSTSLTRLWIRDFQN 334 (357)
Q Consensus 273 ~L~~L~l~~c~~l~~~~~----~~l~~l~~L~~L~l~~~c~~l~~l-~~~~~~~~sL~~L~l~~c~~ 334 (357)
.|+.+.++.|..+++... .+-..+..|+.+++++ ||.+..- -+.....+.|+.+++.+|..
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n-~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDN-CPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecC-CCCchHHHHHHHhhCcccceeeeechhh
Confidence 777777777766553210 0112345677777777 7766431 11111333444444444443
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.30 E-value=3.2e-08 Score=93.25 Aligned_cols=167 Identities=22% Similarity=0.280 Sum_probs=99.7
Q ss_pred EeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCCccEEE
Q 037573 128 LELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQIE 207 (357)
Q Consensus 128 L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~ 207 (357)
.+++.+. ...+|..+..+..|..+.+.. +.+..+|..+.+ +..|..|+++.+ .+..+|..++.++ |+.|.
T Consensus 80 aDlsrNR-~~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~------L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 80 ADLSRNR-FSELPEEACAFVSLESLILYH-NCIRTIPEAICN------LEALTFLDLSSN-QLSHLPDGLCDLP-LKVLI 149 (722)
T ss_pred hhccccc-cccCchHHHHHHHHHHHHHHh-ccceecchhhhh------hhHHHHhhhccc-hhhcCChhhhcCc-ceeEE
Confidence 3444432 345565555566666666654 345556665555 666666666663 4566666666655 56666
Q ss_pred ecCCCCCcccCC--CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEEecCCCCc
Q 037573 208 IRNCPSLVSFPE--RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIF 285 (357)
Q Consensus 208 l~~c~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l 285 (357)
+++ ++++.+|+ +..+ .|..|+.+. +.+..+|..++.+.+|+.|.+.. +.+..+|.+-..-.|.+||++. |++
T Consensus 150 ~sN-Nkl~~lp~~ig~~~--tl~~ld~s~-nei~slpsql~~l~slr~l~vrR-n~l~~lp~El~~LpLi~lDfSc-Nki 223 (722)
T KOG0532|consen 150 VSN-NKLTSLPEEIGLLP--TLAHLDVSK-NEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELCSLPLIRLDFSC-NKI 223 (722)
T ss_pred Eec-CccccCCcccccch--hHHHhhhhh-hhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHhCCceeeeeccc-Cce
Confidence 664 56666665 3333 666666644 44666666777777777777766 4566666653333566677764 666
Q ss_pred eecccccccccCCccEEEEeccCCCCCc
Q 037573 286 KSLFQWGLHRLNSLKELIVNGEFPDMIS 313 (357)
Q Consensus 286 ~~~~~~~l~~l~~L~~L~l~~~c~~l~~ 313 (357)
..+|.. +..+..|++|-|.+ +=|++
T Consensus 224 s~iPv~-fr~m~~Lq~l~Len--NPLqS 248 (722)
T KOG0532|consen 224 SYLPVD-FRKMRHLQVLQLEN--NPLQS 248 (722)
T ss_pred eecchh-hhhhhhheeeeecc--CCCCC
Confidence 666553 66677777777764 44544
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.29 E-value=1.5e-07 Score=82.36 Aligned_cols=194 Identities=15% Similarity=0.232 Sum_probs=118.3
Q ss_pred ccCCCcccEEeeccCcCc------cc--cccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCC-
Q 037573 119 IQVLCRLKYLELIDCECL------VN--LPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDN- 189 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l------~~--lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~- 189 (357)
+..+..|.+|.+++...- .. +|-.+.-+.+|+.+.|+.|.. +.+-..... -|.|+++.+.+...
T Consensus 178 ldf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~-~~i~~~~~~------kptl~t~~v~~s~~~ 250 (490)
T KOG1259|consen 178 LDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALST-ENIVDIELL------KPTLQTICVHNTTIQ 250 (490)
T ss_pred HHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccch-hheeceeec------Cchhheeeeeccccc
Confidence 444678888888764321 11 344555678899999988753 221111001 34566666654220
Q ss_pred -Ccc-ccc--------------------ccCCCCCccEEEecCCCCCcccCC--CCCCCCCcceEEeccCCcchhhHhhh
Q 037573 190 -LKC-LPH--------------------ELHKLSRLQQIEIRNCPSLVSFPE--RGLPSTNLTAVCVINCEKLEALLNGI 245 (357)
Q Consensus 190 -l~~-lp~--------------------~l~~l~~L~~L~l~~c~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~l~~~~ 245 (357)
.+. +|. .+-..+.|+.+++++ +.++.+.+ ...| .++.|+++. +.+..+ ..+
T Consensus 251 ~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~-N~I~~iDESvKL~P--kir~L~lS~-N~i~~v-~nL 325 (490)
T KOG1259|consen 251 DVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSG-NLITQIDESVKLAP--KLRRLILSQ-NRIRTV-QNL 325 (490)
T ss_pred ccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccc-cchhhhhhhhhhcc--ceeEEeccc-cceeee-hhh
Confidence 000 010 112246788888887 56666655 3344 899999987 445655 357
Q ss_pred ccCCcccceeeccCcCccccCCC-CCCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCC--CCCCCC
Q 037573 246 HRLTSHQQLTVEQCPGIVAIPEN-DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQ--EEIGST 322 (357)
Q Consensus 246 ~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~--~~~~~~ 322 (357)
.++++|++|++++ +.+..+-+- .-+.+.++|.+++ |.+++++ +++.+.+|.+|++.+ ++++.+.. .++.+|
T Consensus 326 a~L~~L~~LDLS~-N~Ls~~~Gwh~KLGNIKtL~La~-N~iE~LS--GL~KLYSLvnLDl~~--N~Ie~ldeV~~IG~LP 399 (490)
T KOG1259|consen 326 AELPQLQLLDLSG-NLLAECVGWHLKLGNIKTLKLAQ-NKIETLS--GLRKLYSLVNLDLSS--NQIEELDEVNHIGNLP 399 (490)
T ss_pred hhcccceEeeccc-chhHhhhhhHhhhcCEeeeehhh-hhHhhhh--hhHhhhhheeccccc--cchhhHHHhccccccc
Confidence 8889999999988 455554321 1256888999988 7777664 578889999999988 67766532 233444
Q ss_pred CcceEecc
Q 037573 323 SLTRLWIR 330 (357)
Q Consensus 323 sL~~L~l~ 330 (357)
.|+++.+.
T Consensus 400 CLE~l~L~ 407 (490)
T KOG1259|consen 400 CLETLRLT 407 (490)
T ss_pred HHHHHhhc
Confidence 55544443
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.26 E-value=1.1e-06 Score=83.45 Aligned_cols=172 Identities=23% Similarity=0.366 Sum_probs=108.0
Q ss_pred ccCCCcccEEeeccCcCccccccccCCCC-CcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccccccc
Q 037573 119 IQVLCRLKYLELIDCECLVNLPQALHCLS-SLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHEL 197 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~-~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l 197 (357)
+..+..++.|.+.+. .+..++.....+. +|+.|++++ ..+..+|..... +++|+.|+++.+ .+..+|...
T Consensus 112 ~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~------l~~L~~L~l~~N-~l~~l~~~~ 182 (394)
T COG4886 112 LLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRN------LPNLKNLDLSFN-DLSDLPKLL 182 (394)
T ss_pred hhcccceeEEecCCc-ccccCccccccchhhcccccccc-cchhhhhhhhhc------cccccccccCCc-hhhhhhhhh
Confidence 344466777777654 3566666555553 777777776 566666544344 777777777774 466677666
Q ss_pred CCCCCccEEEecCCCCCcccCCC-CCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC-CCCCCcc
Q 037573 198 HKLSRLQQIEIRNCPSLVSFPER-GLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN-DYPTNLT 275 (357)
Q Consensus 198 ~~l~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~ 275 (357)
+..++|+.|++++ ..+..+|.. ..+ ..|+++.+.+.. +...+..+..+..+..+.+.+ +.+..++.. +.+++++
T Consensus 183 ~~~~~L~~L~ls~-N~i~~l~~~~~~~-~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~l~~l~ 258 (394)
T COG4886 183 SNLSNLNNLDLSG-NKISDLPPEIELL-SALEELDLSNNS-IIELLSSLSNLKNLSGLELSN-NKLEDLPESIGNLSNLE 258 (394)
T ss_pred hhhhhhhheeccC-CccccCchhhhhh-hhhhhhhhcCCc-ceecchhhhhcccccccccCC-ceeeeccchhccccccc
Confidence 5677777777776 566667663 122 247777776643 334445566666677776544 445443332 3456677
Q ss_pred eEEecCCCCceecccccccccCCccEEEEec
Q 037573 276 ILKITDVNIFKSLFQWGLHRLNSLKELIVNG 306 (357)
Q Consensus 276 ~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~ 306 (357)
+|++++ +.++.++. +..+.++++|++++
T Consensus 259 ~L~~s~-n~i~~i~~--~~~~~~l~~L~~s~ 286 (394)
T COG4886 259 TLDLSN-NQISSISS--LGSLTNLRELDLSG 286 (394)
T ss_pred eecccc-cccccccc--ccccCccCEEeccC
Confidence 777777 66666554 56777777777776
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.26 E-value=9.2e-07 Score=73.34 Aligned_cols=127 Identities=17% Similarity=0.270 Sum_probs=43.2
Q ss_pred ccCCCcccEEeeccCcCccccccccC-CCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccccccc
Q 037573 119 IQVLCRLKYLELIDCECLVNLPQALH-CLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHEL 197 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~lp~~~~-~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l 197 (357)
+.+..++++|++.++. +..+.. ++ .+.+|+.|+++++ .+..+..... +++|+.|+++++ .+..++.++
T Consensus 15 ~~n~~~~~~L~L~~n~-I~~Ie~-L~~~l~~L~~L~Ls~N-~I~~l~~l~~-------L~~L~~L~L~~N-~I~~i~~~l 83 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQ-ISTIEN-LGATLDKLEVLDLSNN-QITKLEGLPG-------LPRLKTLDLSNN-RISSISEGL 83 (175)
T ss_dssp ----------------------S---TT-TT--EEE-TTS---S--TT-----------TT--EEE--SS----S-CHHH
T ss_pred cccccccccccccccc-cccccc-hhhhhcCCCEEECCCC-CCccccCccC-------hhhhhhcccCCC-CCCccccch
Confidence 3445577888888864 555543 55 5778888888874 5666553222 788888888874 577775555
Q ss_pred C-CCCCccEEEecCCCCCcccCC----CCCCCCCcceEEeccCCcchh---hHhhhccCCcccceeeccC
Q 037573 198 H-KLSRLQQIEIRNCPSLVSFPE----RGLPSTNLTAVCVINCEKLEA---LLNGIHRLTSHQQLTVEQC 259 (357)
Q Consensus 198 ~-~l~~L~~L~l~~c~~l~~l~~----~~~~~~~L~~L~l~~c~~l~~---l~~~~~~l~~L~~L~l~~c 259 (357)
. .+++|+.|++++ ..+.++.. ..+| +|+.|++.+++-... -..-+..+|+|+.||-...
T Consensus 84 ~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~--~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 84 DKNLPNLQELYLSN-NKISDLNELEPLSSLP--KLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp HHH-TT--EEE-TT-S---SCCCCGGGGG-T--T--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred HHhCCcCCEEECcC-CcCCChHHhHHHHcCC--CcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 3 578888888876 45555443 2344 888888887653221 1124566777777776553
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=2.4e-07 Score=84.89 Aligned_cols=176 Identities=19% Similarity=0.293 Sum_probs=78.9
Q ss_pred ccCCCcccEEeeccCcCccc---cccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCC-cccc
Q 037573 119 IQVLCRLKYLELIDCECLVN---LPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNL-KCLP 194 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~---lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l-~~lp 194 (357)
...|++++.|+++++- +.. +-.-+..||+|+.|+++. +.+..+..+-. .. .+++|+.|.++.|... ..+-
T Consensus 142 ~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~-Nrl~~~~~s~~---~~-~l~~lK~L~l~~CGls~k~V~ 215 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSS-NRLSNFISSNT---TL-LLSHLKQLVLNSCGLSWKDVQ 215 (505)
T ss_pred hhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhccccc-ccccCCccccc---hh-hhhhhheEEeccCCCCHHHHH
Confidence 4456666666666532 111 112234566666666664 23322211100 00 0556666666666421 1222
Q ss_pred cccCCCCCccEEEecCCCCC--cccCCCCCCCCCcceEEeccCCcchhhH--hhhccCCcccceeeccCcCcccc--CCC
Q 037573 195 HELHKLSRLQQIEIRNCPSL--VSFPERGLPSTNLTAVCVINCEKLEALL--NGIHRLTSHQQLTVEQCPGIVAI--PEN 268 (357)
Q Consensus 195 ~~l~~l~~L~~L~l~~c~~l--~~l~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~~l~~L~~L~l~~c~~l~~l--~~~ 268 (357)
..+..+|+|+.|++.+...+ ...+...+. .|++|++++++.+ +++ ...+.++.|..|+++.| .+.++ |..
T Consensus 216 ~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~--~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~ 291 (505)
T KOG3207|consen 216 WILLTFPSLEVLYLEANEIILIKATSTKILQ--TLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSST-GIASIAEPDV 291 (505)
T ss_pred HHHHhCCcHHHhhhhcccccceecchhhhhh--HHhhccccCCccc-ccccccccccccchhhhhcccc-CcchhcCCCc
Confidence 22334566666666654211 111222333 5666666664432 222 23455666666666553 23222 111
Q ss_pred ------CCCCCcceEEecCCCCceeccc-ccccccCCccEEEEe
Q 037573 269 ------DYPTNLTILKITDVNIFKSLFQ-WGLHRLNSLKELIVN 305 (357)
Q Consensus 269 ------~~~~~L~~L~l~~c~~l~~~~~-~~l~~l~~L~~L~l~ 305 (357)
...++|+.|++.. |++...+. ..+..+++|++|.+.
T Consensus 292 ~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 292 ESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred cchhhhcccccceeeeccc-Cccccccccchhhccchhhhhhcc
Confidence 1245666666665 44432211 123444555555544
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.22 E-value=1.1e-06 Score=83.42 Aligned_cols=172 Identities=19% Similarity=0.308 Sum_probs=104.5
Q ss_pred cCCCCCcCEEeecCCCcchhccccccccccccccc-cccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCcccCCC-
Q 037573 143 LHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIIT-SFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPER- 220 (357)
Q Consensus 143 ~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~-~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~- 220 (357)
+..++.+..|.+.+ ..+..++..... +. +|+.|++++ +.+..+|..++.+++|+.|++++ ..+..++..
T Consensus 112 ~~~~~~l~~L~l~~-n~i~~i~~~~~~------~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~ 182 (394)
T COG4886 112 LLELTNLTSLDLDN-NNITDIPPLIGL------LKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLL 182 (394)
T ss_pred hhcccceeEEecCC-cccccCcccccc------chhhcccccccc-cchhhhhhhhhccccccccccCC-chhhhhhhhh
Confidence 44556677777765 456666665553 42 777777776 35666666677777777777776 355666653
Q ss_pred -CCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEEecCCCCceecccccccccCCc
Q 037573 221 -GLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIFKSLFQWGLHRLNSL 299 (357)
Q Consensus 221 -~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L 299 (357)
..+ +|+.|++++ +.+..+|..+.....|++|.+.+...+..........++..+.+.+ +.++..+. .+..++++
T Consensus 183 ~~~~--~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~-~~~~l~~l 257 (394)
T COG4886 183 SNLS--NLNNLDLSG-NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLEDLPE-SIGNLSNL 257 (394)
T ss_pred hhhh--hhhheeccC-CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC-ceeeeccc-hhcccccc
Confidence 333 777777766 4467776665566667777776632233222223345555555444 44443322 25667777
Q ss_pred cEEEEeccCCCCCcCCCCCCCCCCcceEeccc
Q 037573 300 KELIVNGEFPDMISFPQEEIGSTSLTRLWIRD 331 (357)
Q Consensus 300 ~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~ 331 (357)
++|++.+ +.+..++. .....++++|++++
T Consensus 258 ~~L~~s~--n~i~~i~~-~~~~~~l~~L~~s~ 286 (394)
T COG4886 258 ETLDLSN--NQISSISS-LGSLTNLRELDLSG 286 (394)
T ss_pred ceecccc--cccccccc-ccccCccCEEeccC
Confidence 7777775 67777765 44566777777664
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.16 E-value=4.9e-08 Score=88.29 Aligned_cols=209 Identities=16% Similarity=0.230 Sum_probs=126.4
Q ss_pred cccccCCCcccEEeeccCcCccc-cccccCCCCCcCEEeecCCCcchhcccccc-ccccccc------------------
Q 037573 116 TSVIQVLCRLKYLELIDCECLVN-LPQALHCLSSLTEITVAGCTKLVSFLELSS-VAEMFAI------------------ 175 (357)
Q Consensus 116 ~~~~~~l~~L~~L~l~~~~~l~~-lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~-~L~~L~~------------------ 175 (357)
+..|+.+.+|++|+|+.+. +.. -|.++..+++|-.|.+.+-.+|..+|+..+ .|..+..
T Consensus 84 ~~aF~~l~~LRrLdLS~N~-Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~d 162 (498)
T KOG4237|consen 84 PGAFKTLHRLRRLDLSKNN-ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRD 162 (498)
T ss_pred hhhccchhhhceecccccc-hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHH
Confidence 4458889999999999875 444 567888899999988888788999998765 4222221
Q ss_pred cccccEEEeeCCCCCccccc-ccCCCCCccEEEecCCCCC--cccC------------CCCCCCC---------------
Q 037573 176 ITSFENIMVNGCDNLKCLPH-ELHKLSRLQQIEIRNCPSL--VSFP------------ERGLPST--------------- 225 (357)
Q Consensus 176 l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l--~~l~------------~~~~~~~--------------- 225 (357)
+++|..|.+.+ +.+..++. .+..+.+++.+.+.-.+.+ -.+| -++..+.
T Consensus 163 L~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a 241 (498)
T KOG4237|consen 163 LPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDA 241 (498)
T ss_pred hhhcchhcccc-hhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccch
Confidence 44455555444 23344443 2333444444432211100 0000 0111110
Q ss_pred -----CcceE---EeccCCcchhhH-hhhccCCcccceeeccCcCccccCCCCC--CCCcceEEecCCCCceeccccccc
Q 037573 226 -----NLTAV---CVINCEKLEALL-NGIHRLTSHQQLTVEQCPGIVAIPENDY--PTNLTILKITDVNIFKSLFQWGLH 294 (357)
Q Consensus 226 -----~L~~L---~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~~~~~~l~ 294 (357)
+++.+ ....|.....-| ..++.+++|+.|++++ +.++.+....+ ...++.|.+.. |.++.+....+.
T Consensus 242 ~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn-N~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~~~f~ 319 (498)
T KOG4237|consen 242 RKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN-NKITRIEDGAFEGAAELQELYLTR-NKLEFVSSGMFQ 319 (498)
T ss_pred hhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC-CccchhhhhhhcchhhhhhhhcCc-chHHHHHHHhhh
Confidence 00000 000111111111 2467899999999988 68887766533 57899999988 888888777788
Q ss_pred ccCCccEEEEeccCCCCCcC-CCCCCCCCCcceEecc
Q 037573 295 RLNSLKELIVNGEFPDMISF-PQEEIGSTSLTRLWIR 330 (357)
Q Consensus 295 ~l~~L~~L~l~~~c~~l~~l-~~~~~~~~sL~~L~l~ 330 (357)
.++.|++|++++ +++..+ |..+....+|.+|.+-
T Consensus 320 ~ls~L~tL~L~~--N~it~~~~~aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 320 GLSGLKTLSLYD--NQITTVAPGAFQTLFSLSTLNLL 354 (498)
T ss_pred ccccceeeeecC--CeeEEEecccccccceeeeeehc
Confidence 999999999999 888877 4444456677777654
No 35
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1.6e-07 Score=82.05 Aligned_cols=176 Identities=16% Similarity=0.086 Sum_probs=110.3
Q ss_pred CcccEEeeccCcCccc--cccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccc--ccccC
Q 037573 123 CRLKYLELIDCECLVN--LPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCL--PHELH 198 (357)
Q Consensus 123 ~~L~~L~l~~~~~l~~--lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~l--p~~l~ 198 (357)
..|++|+++... ++. +-.-++.+..|+.|.+.|..--..+-..+.. =.+|+.|+++.|..+.+. ...+.
T Consensus 185 sRlq~lDLS~s~-it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk------N~~L~~lnlsm~sG~t~n~~~ll~~ 257 (419)
T KOG2120|consen 185 SRLQHLDLSNSV-ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK------NSNLVRLNLSMCSGFTENALQLLLS 257 (419)
T ss_pred hhhHHhhcchhh-eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc------cccceeeccccccccchhHHHHHHH
Confidence 358888887643 333 2233556778888888774322222222222 457888898888776643 23456
Q ss_pred CCCCccEEEecCCCCCcccC----CCCCCCCCcceEEeccCCcc---hhhHhhhccCCcccceeeccCcCccccCCC--C
Q 037573 199 KLSRLQQIEIRNCPSLVSFP----ERGLPSTNLTAVCVINCEKL---EALLNGIHRLTSHQQLTVEQCPGIVAIPEN--D 269 (357)
Q Consensus 199 ~l~~L~~L~l~~c~~l~~l~----~~~~~~~~L~~L~l~~c~~l---~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~ 269 (357)
+++.|+.|+++.|.-....- .+.- ++|..|+++||..- ..+.--...+++|.+|++++|..++.--.. .
T Consensus 258 scs~L~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~ 335 (419)
T KOG2120|consen 258 SCSRLDELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 335 (419)
T ss_pred hhhhHhhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH
Confidence 68888888888875443221 1222 38888999888642 122223467889999999998777641000 1
Q ss_pred CCCCcceEEecCCCCceecccccccccCCccEEEEeccC
Q 037573 270 YPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEF 308 (357)
Q Consensus 270 ~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c 308 (357)
-++.|++|.++.|-.+-.-....+...|+|.+|++.+ |
T Consensus 336 kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g-~ 373 (419)
T KOG2120|consen 336 KFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFG-C 373 (419)
T ss_pred hcchheeeehhhhcCCChHHeeeeccCcceEEEEecc-c
Confidence 2678999999988766522222356788999999988 5
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=8.7e-07 Score=81.31 Aligned_cols=180 Identities=14% Similarity=0.205 Sum_probs=83.8
Q ss_pred CCCcccEEeeccCcCcccccc--ccCCCCCcCEEeecCCCcchhcc---ccccccccccccccccEEEeeCCCCCccccc
Q 037573 121 VLCRLKYLELIDCECLVNLPQ--ALHCLSSLTEITVAGCTKLVSFL---ELSSVAEMFAIITSFENIMVNGCDNLKCLPH 195 (357)
Q Consensus 121 ~l~~L~~L~l~~~~~l~~lp~--~~~~l~~L~~L~i~~c~~l~~~~---~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~ 195 (357)
++.+|+...+..+. +...+. ....|++++.|++++ +-+.... ..... +|+|+.|+++.+. +...-.
T Consensus 119 n~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~-NL~~nw~~v~~i~eq------Lp~Le~LNls~Nr-l~~~~~ 189 (505)
T KOG3207|consen 119 NLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSR-NLFHNWFPVLKIAEQ------LPSLENLNLSSNR-LSNFIS 189 (505)
T ss_pred hHHhhhheeecCcc-ccccchhhhhhhCCcceeecchh-hhHHhHHHHHHHHHh------cccchhccccccc-ccCCcc
Confidence 45666666666554 233331 344566777777665 2121111 11112 6667777766632 222111
Q ss_pred c--cCCCCCccEEEecCCCCCc-ccCC--CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--
Q 037573 196 E--LHKLSRLQQIEIRNCPSLV-SFPE--RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN-- 268 (357)
Q Consensus 196 ~--l~~l~~L~~L~l~~c~~l~-~l~~--~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-- 268 (357)
+ -..+++|+.|.+++|.--. .+.. ..+| +|+.|++.++..+..-.....-+..|+.|++++. .+..++..
T Consensus 190 s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP--sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N-~li~~~~~~~ 266 (505)
T KOG3207|consen 190 SNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP--SLEVLYLEANEIILIKATSTKILQTLQELDLSNN-NLIDFDQGYK 266 (505)
T ss_pred ccchhhhhhhheEEeccCCCCHHHHHHHHHhCC--cHHHhhhhcccccceecchhhhhhHHhhccccCC-cccccccccc
Confidence 1 1125566666666663210 0100 2344 6666666665322211112233455666666663 33333322
Q ss_pred -CCCCCcceEEecCCCCceecccccc------cccCCccEEEEeccCCCCCcCC
Q 037573 269 -DYPTNLTILKITDVNIFKSLFQWGL------HRLNSLKELIVNGEFPDMISFP 315 (357)
Q Consensus 269 -~~~~~L~~L~l~~c~~l~~~~~~~l------~~l~~L~~L~l~~~c~~l~~l~ 315 (357)
+.++.|..|+++. +.+.++..... ..+++|++|++.. +.+..++
T Consensus 267 ~~~l~~L~~Lnls~-tgi~si~~~d~~s~~kt~~f~kL~~L~i~~--N~I~~w~ 317 (505)
T KOG3207|consen 267 VGTLPGLNQLNLSS-TGIASIAEPDVESLDKTHTFPKLEYLNISE--NNIRDWR 317 (505)
T ss_pred cccccchhhhhccc-cCcchhcCCCccchhhhcccccceeeeccc--Ccccccc
Confidence 4456666666666 33443222111 3456677776665 4554443
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.09 E-value=3.2e-06 Score=70.15 Aligned_cols=128 Identities=20% Similarity=0.292 Sum_probs=43.8
Q ss_pred CCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--CCCCCcce
Q 037573 199 KLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTI 276 (357)
Q Consensus 199 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~ 276 (357)
+..++++|+++++ .+..+..-...+.+|+.|++++| .++.+ +++..++.|+.|++++ +.++.+... ..+++|++
T Consensus 17 n~~~~~~L~L~~n-~I~~Ie~L~~~l~~L~~L~Ls~N-~I~~l-~~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGN-QISTIENLGATLDKLEVLDLSNN-QITKL-EGLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS---S---TT----TT--EEE--S-S---S-CHHHHHH-TT--E
T ss_pred ccccccccccccc-ccccccchhhhhcCCCEEECCCC-CCccc-cCccChhhhhhcccCC-CCCCccccchHHhCCcCCE
Confidence 3456788898874 55555432212248999999884 47777 4677889999999988 677777532 23678999
Q ss_pred EEecCCCCceeccc-ccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCcccccccc
Q 037573 277 LKITDVNIFKSLFQ-WGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYISS 340 (357)
Q Consensus 277 L~l~~c~~l~~~~~-~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~~L~~l~~ 340 (357)
|++++ |.+.++.. ..+..+++|+.|++.+ +| +..-+ .-+...+..+|+|+.+++
T Consensus 93 L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~-NP-v~~~~-------~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 93 LYLSN-NKISDLNELEPLSSLPKLRVLSLEG-NP-VCEKK-------NYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EE-TT-S---SCCCCGGGGG-TT--EEE-TT--G-GGGST-------THHHHHHHH-TT-SEETT
T ss_pred EECcC-CcCCChHHhHHHHcCCCcceeeccC-Cc-ccchh-------hHHHHHHHHcChhheeCC
Confidence 99988 77764433 2457788999999988 43 22222 222234445666666653
No 38
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=4.3e-07 Score=79.49 Aligned_cols=176 Identities=14% Similarity=0.173 Sum_probs=116.1
Q ss_pred CcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCcccCCCC--CCCC
Q 037573 148 SLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERG--LPST 225 (357)
Q Consensus 148 ~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~--~~~~ 225 (357)
.|++++++. ..++.-.-. --|..+.+|+.|.+.+..--..+...+.+-.+|+.+++++|+.+++..... -.++
T Consensus 186 Rlq~lDLS~-s~it~stl~----~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs 260 (419)
T KOG2120|consen 186 RLQHLDLSN-SVITVSTLH----GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCS 260 (419)
T ss_pred hhHHhhcch-hheeHHHHH----HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhh
Confidence 477777776 344321100 001117789999988865444555567777889999999998887765411 1234
Q ss_pred CcceEEeccCCcchhhHh-hhccC-CcccceeeccCcCccccCCC------CCCCCcceEEecCCCCceecccccccccC
Q 037573 226 NLTAVCVINCEKLEALLN-GIHRL-TSHQQLTVEQCPGIVAIPEN------DYPTNLTILKITDVNIFKSLFQWGLHRLN 297 (357)
Q Consensus 226 ~L~~L~l~~c~~l~~l~~-~~~~l-~~L~~L~l~~c~~l~~l~~~------~~~~~L~~L~l~~c~~l~~~~~~~l~~l~ 297 (357)
.|..|+++.|...+.... .+.+. +.|..|+++||.+. +... .-+++|..||+++|..++.-....+..++
T Consensus 261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn--l~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~ 338 (419)
T KOG2120|consen 261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN--LQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN 338 (419)
T ss_pred hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh--hhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc
Confidence 888999988876543321 22222 57888999987432 2222 12789999999999888853333467889
Q ss_pred CccEEEEeccCCCCCc--CCCCCCCCCCcceEecccC
Q 037573 298 SLKELIVNGEFPDMIS--FPQEEIGSTSLTRLWIRDF 332 (357)
Q Consensus 298 ~L~~L~l~~~c~~l~~--l~~~~~~~~sL~~L~l~~c 332 (357)
-|++|.++. |-.+.. +- .+...|+|.||++.+|
T Consensus 339 ~L~~lSlsR-CY~i~p~~~~-~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 339 YLQHLSLSR-CYDIIPETLL-ELNSKPSLVYLDVFGC 373 (419)
T ss_pred hheeeehhh-hcCCChHHee-eeccCcceEEEEeccc
Confidence 999999999 976632 11 2235789999999986
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.05 E-value=3.5e-07 Score=86.42 Aligned_cols=125 Identities=26% Similarity=0.397 Sum_probs=49.5
Q ss_pred ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccC
Q 037573 119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELH 198 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~ 198 (357)
+..+..|.+|+++.+. +..+|..+-.|+ |+.|.+++ +++..+|..++. .+.|..|+.+.| .+..+|..++
T Consensus 117 i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~------~~tl~~ld~s~n-ei~slpsql~ 186 (722)
T KOG0532|consen 117 ICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGL------LPTLAHLDVSKN-EIQSLPSQLG 186 (722)
T ss_pred hhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEec-CccccCCccccc------chhHHHhhhhhh-hhhhchHHhh
Confidence 3344444444444432 333444333333 44444443 344444444332 334444444432 2333444444
Q ss_pred CCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceee
Q 037573 199 KLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTV 256 (357)
Q Consensus 199 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l 256 (357)
.+.+|+.|++.. +.+..+|+.... -.|..|++ .|+++..+|-.+.+++.|++|-+
T Consensus 187 ~l~slr~l~vrR-n~l~~lp~El~~-LpLi~lDf-ScNkis~iPv~fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 187 YLTSLRDLNVRR-NHLEDLPEELCS-LPLIRLDF-SCNKISYLPVDFRKMRHLQVLQL 241 (722)
T ss_pred hHHHHHHHHHhh-hhhhhCCHHHhC-Cceeeeec-ccCceeecchhhhhhhhheeeee
Confidence 444444444433 233333332111 12444444 22334444444444444444444
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.97 E-value=3.4e-06 Score=74.04 Aligned_cols=192 Identities=14% Similarity=0.161 Sum_probs=119.8
Q ss_pred CCCCcCEEeecCCCcchhccccccccc--cccccccccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCccc----C
Q 037573 145 CLSSLTEITVAGCTKLVSFLELSSVAE--MFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSF----P 218 (357)
Q Consensus 145 ~l~~L~~L~i~~c~~l~~~~~~~~~L~--~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l----~ 218 (357)
-+..|.+|..++-..-..-...+.++- +|+.+.+|+.+.++.|.. +.+-.....-|-|+.+.+.+. .+... |
T Consensus 180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~-~~i~~~~~~kptl~t~~v~~s-~~~~~~~l~p 257 (490)
T KOG1259|consen 180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALST-ENIVDIELLKPTLQTICVHNT-TIQDVPSLLP 257 (490)
T ss_pred hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccch-hheeceeecCchhheeeeecc-cccccccccc
Confidence 356788888776322110000000000 233378999999998852 332211112355677766542 11111 1
Q ss_pred C----------------------CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcce
Q 037573 219 E----------------------RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTI 276 (357)
Q Consensus 219 ~----------------------~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~ 276 (357)
+ ... ..|+++++++ +.++.+-+++.-.|.++.|+++. +.+..+.....+++|+.
T Consensus 258 e~~~~D~~~~E~~t~~G~~~~~~dTW--q~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~-N~i~~v~nLa~L~~L~~ 333 (490)
T KOG1259|consen 258 ETILADPSGSEPSTSNGSALVSADTW--QELTELDLSG-NLITQIDESVKLAPKLRRLILSQ-NRIRTVQNLAELPQLQL 333 (490)
T ss_pred hhhhcCccCCCCCccCCceEEecchH--hhhhhccccc-cchhhhhhhhhhccceeEEeccc-cceeeehhhhhcccceE
Confidence 1 011 3678888877 56788878888889999999988 56666655556789999
Q ss_pred EEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEeccc--------------Ccccccccccc
Q 037573 277 LKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRD--------------FQNLEYISSTV 342 (357)
Q Consensus 277 L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~--------------c~~L~~l~~~~ 342 (357)
|++++ |.++.+.-|. ..+-+.++|.+.+ +.++.+.+.. .+-||.+|++++ .|+|+.+...+
T Consensus 334 LDLS~-N~Ls~~~Gwh-~KLGNIKtL~La~--N~iE~LSGL~-KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 334 LDLSG-NLLAECVGWH-LKLGNIKTLKLAQ--NKIETLSGLR-KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred eeccc-chhHhhhhhH-hhhcCEeeeehhh--hhHhhhhhhH-hhhhheeccccccchhhHHHhcccccccHHHHHhhcC
Confidence 99998 7777666552 4678889999998 7888876544 577888887763 56666665555
Q ss_pred ccccc
Q 037573 343 LDLHF 347 (357)
Q Consensus 343 ~~~~~ 347 (357)
.++..
T Consensus 409 NPl~~ 413 (490)
T KOG1259|consen 409 NPLAG 413 (490)
T ss_pred CCccc
Confidence 55543
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.96 E-value=1.5e-05 Score=54.08 Aligned_cols=55 Identities=20% Similarity=0.335 Sum_probs=27.3
Q ss_pred cccceeeccCcCccccCCCCC--CCCcceEEecCCCCceecccccccccCCccEEEEec
Q 037573 250 SHQQLTVEQCPGIVAIPENDY--PTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNG 306 (357)
Q Consensus 250 ~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~ 306 (357)
+|++|++++| .+..+|...+ +++|++|++++ +.++.+++..+..+++|++|++++
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSN 58 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcC
Confidence 4455555543 4444444322 44555555554 445555444455555555555554
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.80 E-value=4.1e-05 Score=51.86 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=49.5
Q ss_pred CCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCC-CCCCCCcceEecccCc
Q 037573 272 TNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQE-EIGSTSLTRLWIRDFQ 333 (357)
Q Consensus 272 ~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~-~~~~~sL~~L~l~~c~ 333 (357)
++|++|++++ +.++.++...+..+++|++|++++ +.+..++.. +..+++|++|++++++
T Consensus 1 p~L~~L~l~~-n~l~~i~~~~f~~l~~L~~L~l~~--N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSN-NKLTEIPPDSFSNLPNLETLDLSN--NNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETS-STESEECTTTTTTGTTESEEEETS--SSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCC-CCCCccCHHHHcCCCCCCEeEccC--CccCccCHHHHcCCCCCCEEeCcCCc
Confidence 5799999999 589999887789999999999997 788888654 4567888888887763
No 43
>PLN03150 hypothetical protein; Provisional
Probab=97.79 E-value=4.7e-05 Score=76.33 Aligned_cols=109 Identities=11% Similarity=0.068 Sum_probs=53.9
Q ss_pred cCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCcccCCCCCCCCCcc
Q 037573 149 LTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLT 228 (357)
Q Consensus 149 L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~ 228 (357)
+..|+++++.--..+|..+.. +++|+.|+++++.....+|..++.+++|+.|+++++.-...+|.....+++|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~------L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~ 493 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISK------LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493 (623)
T ss_pred EEEEECCCCCccccCCHHHhC------CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCC
Confidence 445555553322344444334 55666666665543345555566666666666665433334444222223666
Q ss_pred eEEeccCCcchhhHhhhccC-CcccceeeccCcCcc
Q 037573 229 AVCVINCEKLEALLNGIHRL-TSHQQLTVEQCPGIV 263 (357)
Q Consensus 229 ~L~l~~c~~l~~l~~~~~~l-~~L~~L~l~~c~~l~ 263 (357)
.|+++++.....+|..+... .++..+++.+++.+.
T Consensus 494 ~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred EEECcCCcccccCChHHhhccccCceEEecCCcccc
Confidence 66666554444555554432 344555555544333
No 44
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.63 E-value=7.5e-06 Score=79.43 Aligned_cols=209 Identities=20% Similarity=0.293 Sum_probs=108.4
Q ss_pred CCCcccEEeeccCcCccc--cccccCCCCCcCEEeecCC-CcchhccccccccccccccccccEEEeeCCCCCcccc-cc
Q 037573 121 VLCRLKYLELIDCECLVN--LPQALHCLSSLTEITVAGC-TKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLP-HE 196 (357)
Q Consensus 121 ~l~~L~~L~l~~~~~l~~--lp~~~~~l~~L~~L~i~~c-~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp-~~ 196 (357)
.+++|+.+.+.+|..+.. +-.....+++|+.|++++| ......+... ......+++|+.|++++|..+...- ..
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLL--LLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHh--hhhhhhcCCcCccchhhhhccCchhHHH
Confidence 368888888888877776 3344667888999998873 3222222110 1112227788888888876543321 11
Q ss_pred cC-CCCCccEEEecCCCCCcccCC----CCCCCCCcceEEeccCCcchh--hHhhhccCCcccceeecc---CcCccccC
Q 037573 197 LH-KLSRLQQIEIRNCPSLVSFPE----RGLPSTNLTAVCVINCEKLEA--LLNGIHRLTSHQQLTVEQ---CPGIVAIP 266 (357)
Q Consensus 197 l~-~l~~L~~L~l~~c~~l~~l~~----~~~~~~~L~~L~l~~c~~l~~--l~~~~~~l~~L~~L~l~~---c~~l~~l~ 266 (357)
+. .+++|+.|.+.+|..++.... ..++ +|++|++++|..++. +......+++|+.|.+.. |..++.+.
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~--~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~ 341 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCP--SLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLS 341 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcC--cccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHH
Confidence 22 267888888887876543322 2334 788888888887643 333344466655554443 33344332
Q ss_pred CCCC---C-CCcceEEecCCCCceecccccccccCCcc-EEEEeccCCCC-CcCCCCCCCCCCcceEecccCccc
Q 037573 267 ENDY---P-TNLTILKITDVNIFKSLFQWGLHRLNSLK-ELIVNGEFPDM-ISFPQEEIGSTSLTRLWIRDFQNL 335 (357)
Q Consensus 267 ~~~~---~-~~L~~L~l~~c~~l~~~~~~~l~~l~~L~-~L~l~~~c~~l-~~l~~~~~~~~sL~~L~l~~c~~L 335 (357)
-.+. . ..+..+.+.+|..++........ ..... .+.+.+ |+.+ ..+..-.....+++.|.+..|...
T Consensus 342 l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~g-c~~l~~~l~~~~~~~~~l~~L~l~~~~~~ 414 (482)
T KOG1947|consen 342 LSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRG-CPNLTESLELRLCRSDSLRVLNLSDCRLV 414 (482)
T ss_pred HHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcC-CcccchHHHHHhccCCccceEecccCccc
Confidence 2111 1 14555555555555533222112 22222 344445 5555 222211112222555666555443
No 45
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.54 E-value=3.1e-05 Score=77.82 Aligned_cols=79 Identities=24% Similarity=0.468 Sum_probs=37.3
Q ss_pred CcccEEeeccCcCccc-cccccCC-CCCcCEEeecCCCcch--hccccccccccccccccccEEEeeCCCCCcccccccC
Q 037573 123 CRLKYLELIDCECLVN-LPQALHC-LSSLTEITVAGCTKLV--SFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELH 198 (357)
Q Consensus 123 ~~L~~L~l~~~~~l~~-lp~~~~~-l~~L~~L~i~~c~~l~--~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~ 198 (357)
.+|++|+++|...+.. +|..++. ||+|+.|.+.|- .+. .+.....+ +|+|..|||+++ ++..+ .+++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~s------FpNL~sLDIS~T-nI~nl-~GIS 192 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCAS------FPNLRSLDISGT-NISNL-SGIS 192 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhc------cCccceeecCCC-CccCc-HHHh
Confidence 4566666665443322 3333333 566666666551 111 11111112 556666666663 34444 4555
Q ss_pred CCCCccEEEecC
Q 037573 199 KLSRLQQIEIRN 210 (357)
Q Consensus 199 ~l~~L~~L~l~~ 210 (357)
++++|+.|.+.+
T Consensus 193 ~LknLq~L~mrn 204 (699)
T KOG3665|consen 193 RLKNLQVLSMRN 204 (699)
T ss_pred ccccHHHHhccC
Confidence 555555554443
No 46
>PLN03150 hypothetical protein; Provisional
Probab=97.53 E-value=0.00018 Score=72.26 Aligned_cols=103 Identities=16% Similarity=0.145 Sum_probs=59.0
Q ss_pred ccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeecc
Q 037573 179 FENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQ 258 (357)
Q Consensus 179 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 258 (357)
++.|+++++..-..+|..++.+++|+.|+++++.-...+|...-.+++|+.|+++++.....+|..+.++++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 56666666544445666777777777777776543334554222223777777776554456666677777777777766
Q ss_pred CcCccccCCC--CCCCCcceEEecC
Q 037573 259 CPGIVAIPEN--DYPTNLTILKITD 281 (357)
Q Consensus 259 c~~l~~l~~~--~~~~~L~~L~l~~ 281 (357)
+.....+|.. ....++..+++.+
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~ 524 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTD 524 (623)
T ss_pred CcccccCChHHhhccccCceEEecC
Confidence 5433344432 1123444555554
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.31 E-value=5.1e-05 Score=72.45 Aligned_cols=169 Identities=18% Similarity=0.237 Sum_probs=99.3
Q ss_pred ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccC
Q 037573 119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELH 198 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~ 198 (357)
++.+.+|..|++.+.. +..+...+..+++|++|++++ +.|..+..... ++.|+.|++.++ .+..+ .++.
T Consensus 91 l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~-N~I~~i~~l~~-------l~~L~~L~l~~N-~i~~~-~~~~ 159 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSF-NKITKLEGLST-------LTLLKELNLSGN-LISDI-SGLE 159 (414)
T ss_pred cccccceeeeeccccc-hhhcccchhhhhcchheeccc-cccccccchhh-------ccchhhheeccC-cchhc-cCCc
Confidence 5667888889998754 666655477889999999987 56766654333 777888998884 45555 3455
Q ss_pred CCCCccEEEecCCCCCcccCC---CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCC--
Q 037573 199 KLSRLQQIEIRNCPSLVSFPE---RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTN-- 273 (357)
Q Consensus 199 ~l~~L~~L~l~~c~~l~~l~~---~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~-- 273 (357)
.+++|+.++++++ .+..+.. ..+. +++.+++.++. +..+ .++..+..+..+++.+ +.+..+-.......
T Consensus 160 ~l~~L~~l~l~~n-~i~~ie~~~~~~~~--~l~~l~l~~n~-i~~i-~~~~~~~~l~~~~l~~-n~i~~~~~l~~~~~~~ 233 (414)
T KOG0531|consen 160 SLKSLKLLDLSYN-RIVDIENDELSELI--SLEELDLGGNS-IREI-EGLDLLKKLVLLSLLD-NKISKLEGLNELVMLH 233 (414)
T ss_pred cchhhhcccCCcc-hhhhhhhhhhhhcc--chHHHhccCCc-hhcc-cchHHHHHHHHhhccc-ccceeccCcccchhHH
Confidence 5788888888874 4444544 4444 78888886643 3333 2233333333334433 23333322111222
Q ss_pred cceEEecCCCCceecccccccccCCccEEEEec
Q 037573 274 LTILKITDVNIFKSLFQWGLHRLNSLKELIVNG 306 (357)
Q Consensus 274 L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~ 306 (357)
|+.+++.+ +.+...+ .++..+..+..+++..
T Consensus 234 L~~l~l~~-n~i~~~~-~~~~~~~~l~~l~~~~ 264 (414)
T KOG0531|consen 234 LRELYLSG-NRISRSP-EGLENLKNLPVLDLSS 264 (414)
T ss_pred HHHHhccc-Ccccccc-ccccccccccccchhh
Confidence 66666666 4454332 2244555555555554
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.06 E-value=3.6e-05 Score=75.25 Aligned_cols=81 Identities=19% Similarity=0.315 Sum_probs=57.1
Q ss_pred CCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCC-CCCcceEEecCCCCceecccccccccCCccEEE
Q 037573 225 TNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDY-PTNLTILKITDVNIFKSLFQWGLHRLNSLKELI 303 (357)
Q Consensus 225 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~-~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~ 303 (357)
+.|+.|+++. +++..+ ..+..+++|++|+++. +.++.+|..+. -..|+.|++++ |.++.+. ++.++.+|+.|+
T Consensus 187 ~ale~LnLsh-Nk~~~v-~~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~L~~L~lrn-N~l~tL~--gie~LksL~~LD 260 (1096)
T KOG1859|consen 187 PALESLNLSH-NKFTKV-DNLRRLPKLKHLDLSY-NCLRHVPQLSMVGCKLQLLNLRN-NALTTLR--GIENLKSLYGLD 260 (1096)
T ss_pred HHhhhhccch-hhhhhh-HHHHhccccccccccc-chhccccccchhhhhheeeeecc-cHHHhhh--hHHhhhhhhccc
Confidence 3778888877 345555 3778888888888877 56777765422 22488888888 7777664 567888888888
Q ss_pred EeccCCCCCc
Q 037573 304 VNGEFPDMIS 313 (357)
Q Consensus 304 l~~~c~~l~~ 313 (357)
+++ +-+..
T Consensus 261 lsy--Nll~~ 268 (1096)
T KOG1859|consen 261 LSY--NLLSE 268 (1096)
T ss_pred hhH--hhhhc
Confidence 887 44444
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.05 E-value=6.9e-05 Score=73.32 Aligned_cols=100 Identities=18% Similarity=0.273 Sum_probs=70.4
Q ss_pred cccccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCccccee
Q 037573 176 ITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLT 255 (357)
Q Consensus 176 l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~ 255 (357)
++.|+.|+++.+ .+..+- .+..++.|++|++++ +.+..+|.-....-.|+.|.+++ +.++++ .++.++.+|+.|+
T Consensus 186 l~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~L~~L~lrn-N~l~tL-~gie~LksL~~LD 260 (1096)
T KOG1859|consen 186 LPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGCKLQLLNLRN-NALTTL-RGIENLKSLYGLD 260 (1096)
T ss_pred HHHhhhhccchh-hhhhhH-HHHhccccccccccc-chhccccccchhhhhheeeeecc-cHHHhh-hhHHhhhhhhccc
Confidence 788999999885 455543 677889999999997 57777776222222589999977 557777 5788899999999
Q ss_pred eccCcCccccCCC---CCCCCcceEEecC
Q 037573 256 VEQCPGIVAIPEN---DYPTNLTILKITD 281 (357)
Q Consensus 256 l~~c~~l~~l~~~---~~~~~L~~L~l~~ 281 (357)
+++ +-+....+. ..+..|+.|++.|
T Consensus 261 lsy-Nll~~hseL~pLwsLs~L~~L~LeG 288 (1096)
T KOG1859|consen 261 LSY-NLLSEHSELEPLWSLSSLIVLWLEG 288 (1096)
T ss_pred hhH-hhhhcchhhhHHHHHHHHHHHhhcC
Confidence 987 344444332 2245677777777
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.93 E-value=0.0012 Score=41.28 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=28.5
Q ss_pred CCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccC
Q 037573 225 TNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIP 266 (357)
Q Consensus 225 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 266 (357)
++|++|+++++ .++.+|..+.++++|+.|+++++ .++.++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 37888888774 57788777888888888888885 565554
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.88 E-value=0.00023 Score=68.05 Aligned_cols=189 Identities=21% Similarity=0.267 Sum_probs=115.4
Q ss_pred CCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCC
Q 037573 122 LCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLS 201 (357)
Q Consensus 122 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~ 201 (357)
+..++.+.+.... ++..-..+..+.+|..+++.+ ..+..+...... +++|+.|++++ +.+..+ .++..++
T Consensus 71 l~~l~~l~l~~n~-i~~~~~~l~~~~~l~~l~l~~-n~i~~i~~~l~~------~~~L~~L~ls~-N~I~~i-~~l~~l~ 140 (414)
T KOG0531|consen 71 LTSLKELNLRQNL-IAKILNHLSKLKSLEALDLYD-NKIEKIENLLSS------LVNLQVLDLSF-NKITKL-EGLSTLT 140 (414)
T ss_pred hHhHHhhccchhh-hhhhhcccccccceeeeeccc-cchhhcccchhh------hhcchheeccc-cccccc-cchhhcc
Confidence 3444445544432 333333467788999999987 667766652223 88999999998 456666 3577788
Q ss_pred CccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchhhHhh-hccCCcccceeeccCcCccccCCCCCCCCcceEEe
Q 037573 202 RLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEALLNG-IHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKI 279 (357)
Q Consensus 202 ~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l 279 (357)
.|+.|++.+ ..+..+.. ..++ +|+.+++.++. +..+... ...+.+++.+.+.+ +.+..+........+..+++
T Consensus 141 ~L~~L~l~~-N~i~~~~~~~~l~--~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~-n~i~~i~~~~~~~~l~~~~l 215 (414)
T KOG0531|consen 141 LLKELNLSG-NLISDISGLESLK--SLKLLDLSYNR-IVDIENDELSELISLEELDLGG-NSIREIEGLDLLKKLVLLSL 215 (414)
T ss_pred chhhheecc-CcchhccCCccch--hhhcccCCcch-hhhhhhhhhhhccchHHHhccC-CchhcccchHHHHHHHHhhc
Confidence 899999997 46666654 2244 88889887744 4555322 57788899999987 45555543333344444555
Q ss_pred cCCCCceecccccccccCC--ccEEEEeccCCCCCcCCCCCCCCCCcceEecc
Q 037573 280 TDVNIFKSLFQWGLHRLNS--LKELIVNGEFPDMISFPQEEIGSTSLTRLWIR 330 (357)
Q Consensus 280 ~~c~~l~~~~~~~l~~l~~--L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~ 330 (357)
.+ +.++.+. ++..+.. |+.+++.+ +.+..++......+.+..|++.
T Consensus 216 ~~-n~i~~~~--~l~~~~~~~L~~l~l~~--n~i~~~~~~~~~~~~l~~l~~~ 263 (414)
T KOG0531|consen 216 LD-NKISKLE--GLNELVMLHLRELYLSG--NRISRSPEGLENLKNLPVLDLS 263 (414)
T ss_pred cc-ccceecc--CcccchhHHHHHHhccc--Cccccccccccccccccccchh
Confidence 55 5555332 2334443 78888887 5665553322233444444433
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.87 E-value=0.0015 Score=40.90 Aligned_cols=39 Identities=21% Similarity=0.429 Sum_probs=23.6
Q ss_pred ccccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCccc
Q 037573 177 TSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSF 217 (357)
Q Consensus 177 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l 217 (357)
++|++|+++++ .+..+|..++++++|+.|+++++ .++++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence 35677777764 46666666777777777777764 34443
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.85 E-value=0.0011 Score=66.93 Aligned_cols=129 Identities=16% Similarity=0.208 Sum_probs=83.5
Q ss_pred CCCcccEEeeccCcCccc-cccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccc--cccc
Q 037573 121 VLCRLKYLELIDCECLVN-LPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCL--PHEL 197 (357)
Q Consensus 121 ~l~~L~~L~l~~~~~l~~-lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~l--p~~l 197 (357)
.||.|+.|.+.+-..... +.....++|+|..|||++ +++..+ .++.+ +++|+.|.+.+.. ++.- -..+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl-~GIS~------LknLq~L~mrnLe-~e~~~~l~~L 216 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG-TNISNL-SGISR------LKNLQVLSMRNLE-FESYQDLIDL 216 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCC-CCccCc-HHHhc------cccHHHHhccCCC-CCchhhHHHH
Confidence 489999999998654333 444466899999999999 467666 34445 8888888887643 2221 1346
Q ss_pred CCCCCccEEEecCCCCCccc-------CC-CCCCCCCcceEEeccCCcchhhHh-hhccCCcccceeeccCc
Q 037573 198 HKLSRLQQIEIRNCPSLVSF-------PE-RGLPSTNLTAVCVINCEKLEALLN-GIHRLTSHQQLTVEQCP 260 (357)
Q Consensus 198 ~~l~~L~~L~l~~c~~l~~l-------~~-~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~ 260 (357)
.++++|+.|++|.......- .. ..+| +|+.|+.++...-..+.+ .+..-++|+.+..-+|.
T Consensus 217 F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lp--eLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~~~ 286 (699)
T KOG3665|consen 217 FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLP--ELRFLDCSGTDINEEILEELLNSHPNLQQIAALDCL 286 (699)
T ss_pred hcccCCCeeeccccccccchHHHHHHHHhcccCc--cccEEecCCcchhHHHHHHHHHhCccHhhhhhhhhh
Confidence 77999999999975433221 00 2345 999999887443223322 23455677777665543
No 54
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.79 E-value=9.6e-05 Score=71.70 Aligned_cols=109 Identities=22% Similarity=0.456 Sum_probs=60.4
Q ss_pred CCCcCEEeecCCCcchh--ccccccccccccccccccEEEeeCC-CCCcccc----cccCCCCCccEEEecCCCCCcccC
Q 037573 146 LSSLTEITVAGCTKLVS--FLELSSVAEMFAIITSFENIMVNGC-DNLKCLP----HELHKLSRLQQIEIRNCPSLVSFP 218 (357)
Q Consensus 146 l~~L~~L~i~~c~~l~~--~~~~~~~L~~L~~l~~L~~L~l~~c-~~l~~lp----~~l~~l~~L~~L~l~~c~~l~~l~ 218 (357)
+++|+.+.+.+|..+.. +-..... +++|+.|++++| ......+ .....+++|+.++++.|..+....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~ 260 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALK------CPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG 260 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhh------CchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh
Confidence 57777777777766554 2122223 677777777763 2222111 122235667777777765544332
Q ss_pred C----CCCCCCCcceEEeccCCcch--hhHhhhccCCcccceeeccCcCc
Q 037573 219 E----RGLPSTNLTAVCVINCEKLE--ALLNGIHRLTSHQQLTVEQCPGI 262 (357)
Q Consensus 219 ~----~~~~~~~L~~L~l~~c~~l~--~l~~~~~~l~~L~~L~l~~c~~l 262 (357)
. ..++ +|++|.+.+|..++ .+......+++|++|++++|..+
T Consensus 261 l~~l~~~c~--~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 261 LSALASRCP--NLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HHHHHhhCC--CcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 2 1233 77777776676543 23334456677777777777665
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.48 E-value=0.00054 Score=61.67 Aligned_cols=181 Identities=15% Similarity=0.165 Sum_probs=111.2
Q ss_pred ccCCCcccEEeeccCcCccc----cccccCCCCCcCEEeecCCCcchhccccc-c-cccc------ccccccccEEEeeC
Q 037573 119 IQVLCRLKYLELIDCECLVN----LPQALHCLSSLTEITVAGCTKLVSFLELS-S-VAEM------FAIITSFENIMVNG 186 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~----lp~~~~~l~~L~~L~i~~c~~l~~~~~~~-~-~L~~------L~~l~~L~~L~l~~ 186 (357)
+...++|++++|+++..-.. +-.-+.++..|++|.+.+|- +....... + .|.+ ..-.++|+.+...+
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 44567999999998764333 22346678999999999873 33211111 0 1111 11167899999887
Q ss_pred CCCCccc-----ccccCCCCCccEEEecCCCCCcc--c---CCCCCCCCCcceEEeccCCcch----hhHhhhccCCccc
Q 037573 187 CDNLKCL-----PHELHKLSRLQQIEIRNCPSLVS--F---PERGLPSTNLTAVCVINCEKLE----ALLNGIHRLTSHQ 252 (357)
Q Consensus 187 c~~l~~l-----p~~l~~l~~L~~L~l~~c~~l~~--l---~~~~~~~~~L~~L~l~~c~~l~----~l~~~~~~l~~L~ 252 (357)
+ +++.- -..+...+.|+.+.++.. .+.. + ......+++|+.|++.++..-. .+...+..+++|+
T Consensus 167 N-rlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~ 244 (382)
T KOG1909|consen 167 N-RLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLR 244 (382)
T ss_pred c-ccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhe
Confidence 4 45433 334555678888887753 2211 1 0112234599999999865321 2344567788999
Q ss_pred ceeeccCcCccc---------cCCCCCCCCcceEEecCCCCcee----cccccccccCCccEEEEec
Q 037573 253 QLTVEQCPGIVA---------IPENDYPTNLTILKITDVNIFKS----LFQWGLHRLNSLKELIVNG 306 (357)
Q Consensus 253 ~L~l~~c~~l~~---------l~~~~~~~~L~~L~l~~c~~l~~----~~~~~l~~l~~L~~L~l~~ 306 (357)
.|++++|. ++. +.. + .|+|+.+.+.+ +.++. .....+...+.|+.|+|++
T Consensus 245 El~l~dcl-l~~~Ga~a~~~al~~-~-~p~L~vl~l~g-NeIt~da~~~la~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 245 ELNLGDCL-LENEGAIAFVDALKE-S-APSLEVLELAG-NEITRDAALALAACMAEKPDLEKLNLNG 307 (382)
T ss_pred eecccccc-cccccHHHHHHHHhc-c-CCCCceeccCc-chhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence 99999984 321 111 2 57899999999 55661 1112245578899999998
No 56
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.12 E-value=0.00079 Score=60.60 Aligned_cols=208 Identities=16% Similarity=0.156 Sum_probs=118.2
Q ss_pred ccCCCcccEEeeccCcCccc----cccccCCCCCcCEEeecCCCc---chhcccccc-ccccccccccccEEEeeCCCCC
Q 037573 119 IQVLCRLKYLELIDCECLVN----LPQALHCLSSLTEITVAGCTK---LVSFLELSS-VAEMFAIITSFENIMVNGCDNL 190 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~----lp~~~~~l~~L~~L~i~~c~~---l~~~~~~~~-~L~~L~~l~~L~~L~l~~c~~l 190 (357)
...+..++.+++++++.-.. +...+.+.++|+..++++..- ...+|.... -.+-|-.+++|+.|+++.+-.-
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 34567888999999875443 344566778888888876311 122333211 0001111679999999986432
Q ss_pred cccc----cccCCCCCccEEEecCCCCCcccCC---------------CCCCCCCcceEEeccCCcch-----hhHhhhc
Q 037573 191 KCLP----HELHKLSRLQQIEIRNCPSLVSFPE---------------RGLPSTNLTAVCVINCEKLE-----ALLNGIH 246 (357)
Q Consensus 191 ~~lp----~~l~~l~~L~~L~l~~c~~l~~l~~---------------~~~~~~~L~~L~l~~c~~l~-----~l~~~~~ 246 (357)
..-+ .-+.+..+|++|++.+|- +..... ...+ +.|+.+.... +.+. .+-..++
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~-~~Lrv~i~~r-Nrlen~ga~~~A~~~~ 182 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASK-PKLRVFICGR-NRLENGGATALAEAFQ 182 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCC-cceEEEEeec-cccccccHHHHHHHHH
Confidence 2222 234567889999998873 221110 0111 4788887754 4343 3344567
Q ss_pred cCCcccceeeccCcCccc-----cCCC-CCCCCcceEEecCCCCceec----ccccccccCCccEEEEeccCCCCCc---
Q 037573 247 RLTSHQQLTVEQCPGIVA-----IPEN-DYPTNLTILKITDVNIFKSL----FQWGLHRLNSLKELIVNGEFPDMIS--- 313 (357)
Q Consensus 247 ~l~~L~~L~l~~c~~l~~-----l~~~-~~~~~L~~L~l~~c~~l~~~----~~~~l~~l~~L~~L~l~~~c~~l~~--- 313 (357)
..+.|+.+.+.. +.+.. +... ..+++|+.|++.+ |.++.- ....+..+++|+.|++.+ |.--..
T Consensus 183 ~~~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~LakaL~s~~~L~El~l~d-cll~~~Ga~ 259 (382)
T KOG1909|consen 183 SHPTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALAKALSSWPHLRELNLGD-CLLENEGAI 259 (382)
T ss_pred hccccceEEEec-ccccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHHHHhcccchheeecccc-cccccccHH
Confidence 778888888876 23321 1111 2378999999998 666621 112356677899999998 842211
Q ss_pred -CCCCC-CCCCCcceEecccC
Q 037573 314 -FPQEE-IGSTSLTRLWIRDF 332 (357)
Q Consensus 314 -l~~~~-~~~~sL~~L~l~~c 332 (357)
+...+ ...|+|+.|.+.++
T Consensus 260 a~~~al~~~~p~L~vl~l~gN 280 (382)
T KOG1909|consen 260 AFVDALKESAPSLEVLELAGN 280 (382)
T ss_pred HHHHHHhccCCCCceeccCcc
Confidence 10000 13567777766554
No 57
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.16 E-value=0.0056 Score=51.23 Aligned_cols=84 Identities=17% Similarity=0.150 Sum_probs=54.5
Q ss_pred CcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC---CCCCCcceEEecCCCCceecccccccccCCccEE
Q 037573 226 NLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN---DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKEL 302 (357)
Q Consensus 226 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L 302 (357)
.++.++-+++.-...--..++.+++++.|.+.+|..+.++--+ +..++|+.|++++|..+++.--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4666666554322211234566777888888888777654221 3467899999999988885544446677888888
Q ss_pred EEeccCCC
Q 037573 303 IVNGEFPD 310 (357)
Q Consensus 303 ~l~~~c~~ 310 (357)
.+.+ .+.
T Consensus 182 ~l~~-l~~ 188 (221)
T KOG3864|consen 182 HLYD-LPY 188 (221)
T ss_pred HhcC-chh
Confidence 8776 443
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.99 E-value=0.032 Score=49.64 Aligned_cols=11 Identities=0% Similarity=0.235 Sum_probs=7.1
Q ss_pred cccccEEEeeC
Q 037573 176 ITSFENIMVNG 186 (357)
Q Consensus 176 l~~L~~L~l~~ 186 (357)
+|.|+.|+++.
T Consensus 96 lP~l~~LNls~ 106 (418)
T KOG2982|consen 96 LPALTTLNLSC 106 (418)
T ss_pred CccceEeeccC
Confidence 66666666654
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.87 E-value=0.036 Score=46.50 Aligned_cols=83 Identities=20% Similarity=0.238 Sum_probs=54.1
Q ss_pred CcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--CCCCCcceEEecCCCCceeccc-ccccccCCccEE
Q 037573 226 NLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKITDVNIFKSLFQ-WGLHRLNSLKEL 302 (357)
Q Consensus 226 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~~~~~-~~l~~l~~L~~L 302 (357)
+...++++++ .+..+ ..+.+++.|..|.+.+ +.++.+... .+.++|++|.+.+ |++..+.+ ..+..+|.|++|
T Consensus 43 ~~d~iDLtdN-dl~~l-~~lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDN-DLRKL-DNLPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccceeccccc-chhhc-ccCCCccccceEEecC-CcceeeccchhhhccccceEEecC-cchhhhhhcchhccCCcccee
Confidence 5666777763 34444 3556778888888876 677777554 3467888888888 66653322 135677888888
Q ss_pred EEeccCCCCCcC
Q 037573 303 IVNGEFPDMISF 314 (357)
Q Consensus 303 ~l~~~c~~l~~l 314 (357)
.+-+ +.++..
T Consensus 119 tll~--Npv~~k 128 (233)
T KOG1644|consen 119 TLLG--NPVEHK 128 (233)
T ss_pred eecC--Cchhcc
Confidence 8877 444443
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.67 E-value=0.085 Score=44.35 Aligned_cols=100 Identities=17% Similarity=0.253 Sum_probs=63.7
Q ss_pred CCccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchhhHhhhcc-CCcccceeeccCcCccccCCC---CCCCCcc
Q 037573 201 SRLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEALLNGIHR-LTSHQQLTVEQCPGIVAIPEN---DYPTNLT 275 (357)
Q Consensus 201 ~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~-l~~L~~L~l~~c~~l~~l~~~---~~~~~L~ 275 (357)
-....+++++. .+..++. ..++ .|.+|.+.+ +.++.+-+.+.. +++|+.|.+.+ +++..+.+. ..++.|+
T Consensus 42 d~~d~iDLtdN-dl~~l~~lp~l~--rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 42 DQFDAIDLTDN-DLRKLDNLPHLP--RLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLE 116 (233)
T ss_pred cccceeccccc-chhhcccCCCcc--ccceEEecC-CcceeeccchhhhccccceEEecC-cchhhhhhcchhccCCccc
Confidence 34566777763 4444432 2233 889998855 667777555544 57799999988 566655433 3367999
Q ss_pred eEEecCCCCceeccc---ccccccCCccEEEEec
Q 037573 276 ILKITDVNIFKSLFQ---WGLHRLNSLKELIVNG 306 (357)
Q Consensus 276 ~L~l~~c~~l~~~~~---~~l~~l~~L~~L~l~~ 306 (357)
+|.+-+ +.++.-.. ..+..+|+|+.|++..
T Consensus 117 ~Ltll~-Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 117 YLTLLG-NPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeeecC-CchhcccCceeEEEEecCcceEeehhh
Confidence 999988 55552211 1245678888888776
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.66 E-value=0.034 Score=49.49 Aligned_cols=196 Identities=16% Similarity=0.166 Sum_probs=108.4
Q ss_pred CCcccEEeeccCcCcccc---ccccCCCCCcCEEeecCCCcch----hccccccccccccccccccEEEeeCCC-CCccc
Q 037573 122 LCRLKYLELIDCECLVNL---PQALHCLSSLTEITVAGCTKLV----SFLELSSVAEMFAIITSFENIMVNGCD-NLKCL 193 (357)
Q Consensus 122 l~~L~~L~l~~~~~l~~l---p~~~~~l~~L~~L~i~~c~~l~----~~~~~~~~L~~L~~l~~L~~L~l~~c~-~l~~l 193 (357)
.+.++.+++.++. +..+ ..-+.++|.|+.|+++. +.+. +.|. . ..+|+.|.+.+.. .....
T Consensus 70 ~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~-N~L~s~I~~lp~---p------~~nl~~lVLNgT~L~w~~~ 138 (418)
T KOG2982|consen 70 VTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSC-NSLSSDIKSLPL---P------LKNLRVLVLNGTGLSWTQS 138 (418)
T ss_pred hhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccC-CcCCCccccCcc---c------ccceEEEEEcCCCCChhhh
Confidence 4677778887754 3333 33456788899998874 4443 2331 1 5688888887743 12233
Q ss_pred ccccCCCCCccEEEecCCCCCcccCC------CCCCCCCcceEEeccCCcchhh--HhhhccCCcccceeeccCcCcccc
Q 037573 194 PHELHKLSRLQQIEIRNCPSLVSFPE------RGLPSTNLTAVCVINCEKLEAL--LNGIHRLTSHQQLTVEQCPGIVAI 265 (357)
Q Consensus 194 p~~l~~l~~L~~L~l~~c~~l~~l~~------~~~~~~~L~~L~l~~c~~l~~l--~~~~~~l~~L~~L~l~~c~~l~~l 265 (357)
-..+..+|.++.|.++.. ++..+-. ..- +.++++.+.+|...... -.-.+-+|++..+.+..|+ ++..
T Consensus 139 ~s~l~~lP~vtelHmS~N-~~rq~n~Dd~c~e~~s--~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~ 214 (418)
T KOG2982|consen 139 TSSLDDLPKVTELHMSDN-SLRQLNLDDNCIEDWS--TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTE 214 (418)
T ss_pred hhhhhcchhhhhhhhccc-hhhhhccccccccccc--hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccch
Confidence 334455666666666542 2211111 111 25666777676543221 1112447888888887775 3222
Q ss_pred CC-CC--CCCCcceEEecCCCCceec-ccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCccccccc
Q 037573 266 PE-ND--YPTNLTILKITDVNIFKSL-FQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYIS 339 (357)
Q Consensus 266 ~~-~~--~~~~L~~L~l~~c~~l~~~-~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~~L~~l~ 339 (357)
.. .+ ..+.+..|+++. +++.+. ....+..+++|..|.+.+ .|-.+.+-.+.. .+|-|.-.++++.+.
T Consensus 215 s~ek~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~-~Pl~d~l~~~er-----r~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 215 SSEKGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSE-NPLSDPLRGGER-----RFLLIARLTKVQVLN 285 (418)
T ss_pred hhcccCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccC-CcccccccCCcc-----eEEEEeeccceEEec
Confidence 21 12 245666777776 555522 223467788999999988 777766654331 233444455555554
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.17 E-value=0.0031 Score=55.33 Aligned_cols=76 Identities=20% Similarity=0.248 Sum_probs=32.8
Q ss_pred cceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEEecCCCCceecccc-cccccCCccEEEEe
Q 037573 227 LTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIFKSLFQW-GLHRLNSLKELIVN 305 (357)
Q Consensus 227 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~-~l~~l~~L~~L~l~ 305 (357)
.+.|+.+||. +..+ .-..+++.|+.|.++- +++..+....-+.+|+.|.|+. |.+.++.+. =+.++++|++|.|.
T Consensus 21 vkKLNcwg~~-L~DI-sic~kMp~lEVLsLSv-NkIssL~pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 21 VKKLNCWGCG-LDDI-SICEKMPLLEVLSLSV-NKISSLAPLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred hhhhcccCCC-ccHH-HHHHhcccceeEEeec-cccccchhHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhhc
Confidence 3444444443 3333 1233444555555543 3344333322344555555554 444433221 13455555555555
Q ss_pred c
Q 037573 306 G 306 (357)
Q Consensus 306 ~ 306 (357)
.
T Consensus 97 E 97 (388)
T KOG2123|consen 97 E 97 (388)
T ss_pred c
Confidence 4
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.03 E-value=0.31 Score=37.76 Aligned_cols=32 Identities=22% Similarity=0.213 Sum_probs=11.1
Q ss_pred CCCcceEEecCCCCceecccccccccCCccEEEEe
Q 037573 271 PTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVN 305 (357)
Q Consensus 271 ~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~ 305 (357)
+++|+.+.+.. ++..+....+... +|+.+.+.
T Consensus 80 ~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 80 CTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp -TTECEEEETT--T-BEEHTTTTTT--T--EEE-T
T ss_pred cccccccccCc--cccEEchhhhcCC-CceEEEEC
Confidence 34555555533 2333333334443 45544443
No 64
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.01 E-value=0.01 Score=49.63 Aligned_cols=39 Identities=13% Similarity=0.236 Sum_probs=25.3
Q ss_pred CCcceEEeccCCcchhhH-hhhccCCcccceeeccCcCcc
Q 037573 225 TNLTAVCVINCEKLEALL-NGIHRLTSHQQLTVEQCPGIV 263 (357)
Q Consensus 225 ~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~ 263 (357)
++|+.|++++|+.+++-. ..+.++++|+.|.+.+.+.+.
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhh
Confidence 377777777777776432 356667777777777655443
No 65
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=93.88 E-value=0.0033 Score=49.40 Aligned_cols=100 Identities=19% Similarity=0.311 Sum_probs=60.4
Q ss_pred ccEEeeccCcCcccccc---ccCCCCCcCEEeecCCCcchhcccccc-ccccccccccccEEEeeCCCCCcccccccCCC
Q 037573 125 LKYLELIDCECLVNLPQ---ALHCLSSLTEITVAGCTKLVSFLELSS-VAEMFAIITSFENIMVNGCDNLKCLPHELHKL 200 (357)
Q Consensus 125 L~~L~l~~~~~l~~lp~---~~~~l~~L~~L~i~~c~~l~~~~~~~~-~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l 200 (357)
+-.++++.|. +.++++ .+.....|...++++ +.+..+|+.+. . ++-++.|++.+ +.+..+|.++..+
T Consensus 29 ~h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~-N~fk~fp~kft~k------f~t~t~lNl~~-neisdvPeE~Aam 99 (177)
T KOG4579|consen 29 LHFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSD-NGFKKFPKKFTIK------FPTATTLNLAN-NEISDVPEELAAM 99 (177)
T ss_pred hhhcccccch-hhHHHHHHHHHhCCceEEEEeccc-chhhhCCHHHhhc------cchhhhhhcch-hhhhhchHHHhhh
Confidence 3345677775 344444 344455666677877 56777776544 3 45677788877 4577788888788
Q ss_pred CCccEEEecCCCCCcccCCCCCCCCCcceEEecc
Q 037573 201 SRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVIN 234 (357)
Q Consensus 201 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~ 234 (357)
+.|+.|+++.. .+...|.-..|..++-.|+.-+
T Consensus 100 ~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 100 PALRSLNLRFN-PLNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred HHhhhcccccC-ccccchHHHHHHHhHHHhcCCC
Confidence 88888888763 3444444333333444554433
No 66
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=93.40 E-value=0.0053 Score=48.28 Aligned_cols=86 Identities=14% Similarity=0.162 Sum_probs=43.1
Q ss_pred CcceEEeccCCcchhhHhhhc-cCCcccceeeccCcCccccCCC-CCCCCcceEEecCCCCceecccccccccCCccEEE
Q 037573 226 NLTAVCVINCEKLEALLNGIH-RLTSHQQLTVEQCPGIVAIPEN-DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELI 303 (357)
Q Consensus 226 ~L~~L~l~~c~~l~~l~~~~~-~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~ 303 (357)
.|...++++ +.+..+|..+. .++-+..|++.+ +.+.++|.+ ...+.|+.|+++. |.+...+.. +..+.+|-.|+
T Consensus 54 el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~-N~l~~~p~v-i~~L~~l~~Ld 129 (177)
T KOG4579|consen 54 ELTKISLSD-NGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRF-NPLNAEPRV-IAPLIKLDMLD 129 (177)
T ss_pred eEEEEeccc-chhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhccccc-CccccchHH-HHHHHhHHHhc
Confidence 445555555 33455554332 344556666655 455556555 2255666666665 444433332 23355555555
Q ss_pred EeccCCCCCcCCCC
Q 037573 304 VNGEFPDMISFPQE 317 (357)
Q Consensus 304 l~~~c~~l~~l~~~ 317 (357)
..+ +.+..+|..
T Consensus 130 s~~--na~~eid~d 141 (177)
T KOG4579|consen 130 SPE--NARAEIDVD 141 (177)
T ss_pred CCC--CccccCcHH
Confidence 554 555555544
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.36 E-value=0.55 Score=36.35 Aligned_cols=100 Identities=18% Similarity=0.283 Sum_probs=40.3
Q ss_pred ccCCCcccEEeeccCcCcccccc-ccCCCCCcCEEeecCCCcchhcccccc-ccccccccccccEEEeeCCCCCcccccc
Q 037573 119 IQVLCRLKYLELIDCECLVNLPQ-ALHCLSSLTEITVAGCTKLVSFLELSS-VAEMFAIITSFENIMVNGCDNLKCLPHE 196 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~~-~L~~L~~l~~L~~L~l~~c~~l~~lp~~ 196 (357)
+..+.+|+.+.+.. .+..++. .+..+++|+.+.+.+ .+..++...+ . +++++.+.+.+ .+..++..
T Consensus 8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~------~~~l~~i~~~~--~~~~i~~~ 75 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSN------CKSLESITFPN--NLKSIGDN 75 (129)
T ss_dssp TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-------TT-EEEEETS--TT-EE-TT
T ss_pred HhCCCCCCEEEECC--CeeEeChhhcccccccccccccc--cccccceeeeec------ccccccccccc--cccccccc
Confidence 44555666666653 2445443 355565677776654 2555554333 2 44566666643 33444332
Q ss_pred -cCCCCCccEEEecCCCCCcccCCCCCCCCCcceEEe
Q 037573 197 -LHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCV 232 (357)
Q Consensus 197 -l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l 232 (357)
+...++|+.+.+.. .+..++...+.-.+|+.+.+
T Consensus 76 ~F~~~~~l~~i~~~~--~~~~i~~~~f~~~~l~~i~~ 110 (129)
T PF13306_consen 76 AFSNCTNLKNIDIPS--NITEIGSSSFSNCNLKEINI 110 (129)
T ss_dssp TTTT-TTECEEEETT--T-BEEHTTTTTT-T--EEE-
T ss_pred cccccccccccccCc--cccEEchhhhcCCCceEEEE
Confidence 33356666666643 24444443333224555544
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.91 E-value=0.053 Score=28.15 Aligned_cols=17 Identities=29% Similarity=0.587 Sum_probs=7.7
Q ss_pred ccEEEeeCCCCCcccccc
Q 037573 179 FENIMVNGCDNLKCLPHE 196 (357)
Q Consensus 179 L~~L~l~~c~~l~~lp~~ 196 (357)
|++|++++| .+..+|.+
T Consensus 2 L~~Ldls~n-~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSS 18 (22)
T ss_dssp ESEEEETSS-EESEEGTT
T ss_pred ccEEECCCC-cCEeCChh
Confidence 444555544 33444443
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.88 E-value=0.0051 Score=54.01 Aligned_cols=83 Identities=17% Similarity=0.243 Sum_probs=41.7
Q ss_pred CCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccc--cccCC
Q 037573 122 LCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLP--HELHK 199 (357)
Q Consensus 122 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp--~~l~~ 199 (357)
+.+.+.|+.-||. +..+.- ...++.|+.|.++- +++.++.+ +..+++|+.|.+..+ .+..+- ..+.+
T Consensus 18 l~~vkKLNcwg~~-L~DIsi-c~kMp~lEVLsLSv-NkIssL~p-------l~rCtrLkElYLRkN-~I~sldEL~YLkn 86 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDISI-CEKMPLLEVLSLSV-NKISSLAP-------LQRCTRLKELYLRKN-CIESLDELEYLKN 86 (388)
T ss_pred HHHhhhhcccCCC-ccHHHH-HHhcccceeEEeec-cccccchh-------HHHHHHHHHHHHHhc-ccccHHHHHHHhc
Confidence 4455566666664 444433 44566666666653 34443322 111666666666552 233331 22445
Q ss_pred CCCccEEEecCCCCCc
Q 037573 200 LSRLQQIEIRNCPSLV 215 (357)
Q Consensus 200 l~~L~~L~l~~c~~l~ 215 (357)
+|+|+.|++...+...
T Consensus 87 lpsLr~LWL~ENPCc~ 102 (388)
T KOG2123|consen 87 LPSLRTLWLDENPCCG 102 (388)
T ss_pred CchhhhHhhccCCccc
Confidence 5666666665544443
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.63 E-value=0.065 Score=27.82 Aligned_cols=17 Identities=12% Similarity=0.130 Sum_probs=8.1
Q ss_pred cceEEeccCCcchhhHhh
Q 037573 227 LTAVCVINCEKLEALLNG 244 (357)
Q Consensus 227 L~~L~l~~c~~l~~l~~~ 244 (357)
|++|++++| .++.+|.+
T Consensus 2 L~~Ldls~n-~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSS 18 (22)
T ss_dssp ESEEEETSS-EESEEGTT
T ss_pred ccEEECCCC-cCEeCChh
Confidence 455555554 34444443
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.17 E-value=0.16 Score=44.34 Aligned_cols=88 Identities=18% Similarity=0.214 Sum_probs=48.9
Q ss_pred cccCCCcccEEeeccC--cCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccccc
Q 037573 118 VIQVLCRLKYLELIDC--ECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPH 195 (357)
Q Consensus 118 ~~~~l~~L~~L~l~~~--~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~ 195 (357)
.+..+++|+.|.++++ +....++.-+..+|+|+++++++ +++.. +. .++-+..+.+|..|++.+|.... +-.
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~-ls---tl~pl~~l~nL~~Ldl~n~~~~~-l~d 133 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKD-LS---TLRPLKELENLKSLDLFNCSVTN-LDD 133 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC-Ccccc-cc---ccchhhhhcchhhhhcccCCccc-ccc
Confidence 3556778888888876 44444544455668888888877 34432 11 12223336677777777765322 210
Q ss_pred ----ccCCCCCccEEEecCC
Q 037573 196 ----ELHKLSRLQQIEIRNC 211 (357)
Q Consensus 196 ----~l~~l~~L~~L~l~~c 211 (357)
.+.-+++|++|+-.++
T Consensus 134 yre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 134 YREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred HHHHHHHHhhhhcccccccc
Confidence 1222566666654443
No 72
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.66 E-value=0.28 Score=42.89 Aligned_cols=82 Identities=13% Similarity=0.149 Sum_probs=37.1
Q ss_pred cccccEEEeeCC--CCCcccccccCCCCCccEEEecCCCCCcc---cCC-CCCCCCCcceEEeccCCcch--hhH-hhhc
Q 037573 176 ITSFENIMVNGC--DNLKCLPHELHKLSRLQQIEIRNCPSLVS---FPE-RGLPSTNLTAVCVINCEKLE--ALL-NGIH 246 (357)
Q Consensus 176 l~~L~~L~l~~c--~~l~~lp~~l~~l~~L~~L~l~~c~~l~~---l~~-~~~~~~~L~~L~l~~c~~l~--~l~-~~~~ 246 (357)
+++|+.|.++.+ .-...++.....+|+|+++++++. .+.. ++. ..+. +|..|++.+|.... .-- ..+.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~--nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELE--NLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhc--chhhhhcccCCccccccHHHHHHH
Confidence 555566655544 222223333334466666666552 2221 111 2222 55566665554322 110 1234
Q ss_pred cCCcccceeeccCc
Q 037573 247 RLTSHQQLTVEQCP 260 (357)
Q Consensus 247 ~l~~L~~L~l~~c~ 260 (357)
-+++|++|+-.++.
T Consensus 141 ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 141 LLPSLKYLDGCDVD 154 (260)
T ss_pred HhhhhccccccccC
Confidence 45677777666543
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.37 E-value=0.19 Score=24.26 Aligned_cols=8 Identities=0% Similarity=0.243 Sum_probs=2.7
Q ss_pred ccEEEeeC
Q 037573 179 FENIMVNG 186 (357)
Q Consensus 179 L~~L~l~~ 186 (357)
|+.|++++
T Consensus 3 L~~L~l~~ 10 (17)
T PF13504_consen 3 LRTLDLSN 10 (17)
T ss_dssp -SEEEETS
T ss_pred cCEEECCC
Confidence 33333333
No 74
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=87.54 E-value=0.23 Score=43.85 Aligned_cols=92 Identities=9% Similarity=0.096 Sum_probs=52.5
Q ss_pred cCCCcccEEeeccCcCccc----cccccCCCCCcCEEeecCCCc---chhcccccc-ccccccccccccEEEeeCCCCCc
Q 037573 120 QVLCRLKYLELIDCECLVN----LPQALHCLSSLTEITVAGCTK---LVSFLELSS-VAEMFAIITSFENIMVNGCDNLK 191 (357)
Q Consensus 120 ~~l~~L~~L~l~~~~~l~~----lp~~~~~l~~L~~L~i~~c~~---l~~~~~~~~-~L~~L~~l~~L~~L~l~~c~~l~ 191 (357)
..+..+..++++|++.-+. +...+.+-.+|+..++++..- -..++.... -++-|-.+|.|+..+++.+..-.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 3467788889998875444 444566667777777765210 012222111 11122227888888888755434
Q ss_pred ccccc----cCCCCCccEEEecCC
Q 037573 192 CLPHE----LHKLSRLQQIEIRNC 211 (357)
Q Consensus 192 ~lp~~----l~~l~~L~~L~l~~c 211 (357)
..|+. +++-+.|++|.+++|
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecC
Confidence 44433 445677888877765
No 75
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=79.06 E-value=1.1 Score=24.03 Aligned_cols=15 Identities=20% Similarity=0.284 Sum_probs=7.8
Q ss_pred CCcceEEecCCCCce
Q 037573 272 TNLTILKITDVNIFK 286 (357)
Q Consensus 272 ~~L~~L~l~~c~~l~ 286 (357)
++|+.|++++|.+++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 345555555555544
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=74.95 E-value=1.9 Score=23.06 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=11.6
Q ss_pred CCccEEEEeccCCCCCcCCCC
Q 037573 297 NSLKELIVNGEFPDMISFPQE 317 (357)
Q Consensus 297 ~~L~~L~l~~~c~~l~~l~~~ 317 (357)
++|++|++.+ +.++.+|.+
T Consensus 2 ~~L~~L~L~~--N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSN--NQLSSLPPG 20 (26)
T ss_pred CCCCEEECCC--CcCCcCCHH
Confidence 4566666665 566666554
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=74.95 E-value=1.9 Score=23.06 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=11.6
Q ss_pred CCccEEEEeccCCCCCcCCCC
Q 037573 297 NSLKELIVNGEFPDMISFPQE 317 (357)
Q Consensus 297 ~~L~~L~l~~~c~~l~~l~~~ 317 (357)
++|++|++.+ +.++.+|.+
T Consensus 2 ~~L~~L~L~~--N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSN--NQLSSLPPG 20 (26)
T ss_pred CCCCEEECCC--CcCCcCCHH
Confidence 4566666665 566666554
No 78
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=67.24 E-value=6.7 Score=34.95 Aligned_cols=138 Identities=14% Similarity=0.128 Sum_probs=79.9
Q ss_pred ccCCCcccEEeeccCcCcccccc----ccCCCCCcCEEeecCCCcchhcccc-cc-cccccc------ccccccEEEeeC
Q 037573 119 IQVLCRLKYLELIDCECLVNLPQ----ALHCLSSLTEITVAGCTKLVSFLEL-SS-VAEMFA------IITSFENIMVNG 186 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~lp~----~~~~l~~L~~L~i~~c~~l~~~~~~-~~-~L~~L~------~l~~L~~L~l~~ 186 (357)
+-.||+|+..+++++..-...|. .+++-..|.+|.+.+| .+..+... ++ .|.+|. --|.|+.....+
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 55679999999998765555544 4667788999999885 44322211 11 111111 167888887776
Q ss_pred CCCCcccccc-----cCCCCCccEEEecCCCCCccc--C----CCCCCCCCcceEEeccCCcch----hhHhhhccCCcc
Q 037573 187 CDNLKCLPHE-----LHKLSRLQQIEIRNCPSLVSF--P----ERGLPSTNLTAVCVINCEKLE----ALLNGIHRLTSH 251 (357)
Q Consensus 187 c~~l~~lp~~-----l~~l~~L~~L~l~~c~~l~~l--~----~~~~~~~~L~~L~l~~c~~l~----~l~~~~~~l~~L 251 (357)
+ +++..|.. +..-.+|+.+.+... .+..- . .+.+.+.+|+.|++.++..-. .+...+..++.|
T Consensus 167 N-Rlengs~~~~a~~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 167 N-RLENGSKELSAALLESHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred c-hhccCcHHHHHHHHHhhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence 3 45554432 222246777776642 22111 0 022333588999988865311 233345667778
Q ss_pred cceeeccC
Q 037573 252 QQLTVEQC 259 (357)
Q Consensus 252 ~~L~l~~c 259 (357)
+.|.+.+|
T Consensus 245 rEL~lnDC 252 (388)
T COG5238 245 RELRLNDC 252 (388)
T ss_pred hhccccch
Confidence 88888887
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=56.86 E-value=7.2 Score=21.15 Aligned_cols=17 Identities=47% Similarity=0.679 Sum_probs=7.8
Q ss_pred CccEEEEeccCCCCCcCCC
Q 037573 298 SLKELIVNGEFPDMISFPQ 316 (357)
Q Consensus 298 ~L~~L~l~~~c~~l~~l~~ 316 (357)
+|+.|++++ +++.++|+
T Consensus 3 ~L~~L~vs~--N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSN--NQLTSLPE 19 (26)
T ss_pred ccceeecCC--CccccCcc
Confidence 344444443 44444443
No 80
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=48.18 E-value=33 Score=20.97 Aligned_cols=12 Identities=25% Similarity=0.016 Sum_probs=6.8
Q ss_pred CCCCcceEeccc
Q 037573 320 GSTSLTRLWIRD 331 (357)
Q Consensus 320 ~~~sL~~L~l~~ 331 (357)
.|++|++|.+.+
T Consensus 32 lP~sl~~L~fg~ 43 (44)
T PF05725_consen 32 LPNSLKSLSFGY 43 (44)
T ss_pred cCCCceEEEeeC
Confidence 455666665543
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=35.06 E-value=28 Score=17.86 Aligned_cols=11 Identities=9% Similarity=0.287 Sum_probs=4.3
Q ss_pred CCcCEEeecCC
Q 037573 147 SSLTEITVAGC 157 (357)
Q Consensus 147 ~~L~~L~i~~c 157 (357)
++|++|++++|
T Consensus 2 ~~L~~L~l~~n 12 (24)
T PF13516_consen 2 PNLETLDLSNN 12 (24)
T ss_dssp TT-SEEE-TSS
T ss_pred CCCCEEEccCC
Confidence 34555555543
No 82
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=20.93 E-value=69 Score=17.26 Aligned_cols=10 Identities=30% Similarity=0.405 Sum_probs=5.5
Q ss_pred CCccEEEEec
Q 037573 297 NSLKELIVNG 306 (357)
Q Consensus 297 ~~L~~L~l~~ 306 (357)
.+|+.|+++.
T Consensus 2 ~~L~~L~L~~ 11 (26)
T smart00365 2 TNLEELDLSQ 11 (26)
T ss_pred CccCEEECCC
Confidence 3455555555
Done!