Query 037573
Match_columns 357
No_of_seqs 186 out of 2547
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 23:42:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037573.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037573hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.8 1.5E-20 5E-25 172.5 16.4 201 118-330 99-309 (328)
2 4fcg_A Uncharacterized protein 99.8 1.9E-20 6.7E-25 171.7 14.9 206 122-340 80-295 (328)
3 1ogq_A PGIP-2, polygalacturona 99.8 9.7E-20 3.3E-24 165.9 11.7 252 50-336 50-305 (313)
4 3rgz_A Protein brassinosteroid 99.8 1.6E-19 5.5E-24 183.8 13.1 231 116-355 459-766 (768)
5 2id5_A Lingo-1, leucine rich r 99.8 1.3E-17 4.5E-22 160.4 20.0 201 119-332 124-330 (477)
6 4eco_A Uncharacterized protein 99.8 3.9E-18 1.3E-22 170.0 16.6 266 48-330 247-544 (636)
7 3v47_A TOLL-like receptor 5B a 99.8 1.3E-17 4.3E-22 159.5 19.3 129 50-188 30-165 (455)
8 3rgz_A Protein brassinosteroid 99.8 2.2E-18 7.4E-23 175.4 14.6 134 119-258 414-547 (768)
9 4ecn_A Leucine-rich repeat pro 99.8 1.3E-17 4.3E-22 170.4 19.1 266 48-331 489-785 (876)
10 2id5_A Lingo-1, leucine rich r 99.7 5.3E-17 1.8E-21 156.2 19.5 266 50-332 32-306 (477)
11 4fmz_A Internalin; leucine ric 99.7 2.9E-17 1E-21 151.3 16.9 146 176-333 176-322 (347)
12 3vq2_A TLR4, TOLL-like recepto 99.7 1.5E-17 5.2E-22 164.7 15.3 266 47-332 282-555 (606)
13 3v47_A TOLL-like receptor 5B a 99.7 1.9E-17 6.4E-22 158.2 15.0 278 47-331 51-404 (455)
14 1xku_A Decorin; proteoglycan, 99.7 2.3E-16 7.8E-21 144.5 21.3 196 119-333 96-304 (330)
15 4eco_A Uncharacterized protein 99.7 8.8E-18 3E-22 167.4 11.1 269 47-332 203-523 (636)
16 3o6n_A APL1; leucine-rich repe 99.7 3.1E-17 1E-21 153.8 13.2 262 47-332 42-328 (390)
17 4fmz_A Internalin; leucine ric 99.7 1.6E-16 5.5E-21 146.4 17.1 254 48-332 42-297 (347)
18 2xwt_C Thyrotropin receptor; s 99.7 1.4E-16 4.9E-21 139.0 15.8 199 123-335 31-239 (239)
19 1ogq_A PGIP-2, polygalacturona 99.7 2E-17 6.7E-22 150.6 10.4 205 116-332 69-278 (313)
20 4ecn_A Leucine-rich repeat pro 99.7 4.5E-17 1.5E-21 166.3 13.8 269 47-332 445-763 (876)
21 3o6n_A APL1; leucine-rich repe 99.7 3.1E-16 1.1E-20 146.9 18.4 267 48-332 67-349 (390)
22 3t6q_A CD180 antigen; protein- 99.7 2.4E-16 8.4E-21 156.0 18.4 202 119-331 346-556 (606)
23 2z80_A TOLL-like receptor 2, v 99.7 1.8E-16 6.2E-21 146.5 16.3 243 50-333 52-312 (353)
24 2ft3_A Biglycan; proteoglycan, 99.7 4E-16 1.4E-20 143.0 17.8 194 119-333 98-305 (332)
25 1jl5_A Outer protein YOPM; leu 99.7 4E-16 1.4E-20 149.2 18.3 249 44-332 5-267 (454)
26 3zyi_A Leucine-rich repeat-con 99.7 2.3E-16 8E-21 150.8 16.7 198 119-331 95-299 (452)
27 3oja_B Anopheles plasmodium-re 99.7 3.8E-16 1.3E-20 154.5 18.3 267 48-332 73-355 (597)
28 2z66_A Variable lymphocyte rec 99.7 2.7E-16 9.4E-21 142.3 15.8 200 119-332 48-258 (306)
29 3oja_B Anopheles plasmodium-re 99.7 1.3E-16 4.4E-21 157.9 14.6 262 47-332 48-334 (597)
30 3zyi_A Leucine-rich repeat-con 99.7 6.2E-16 2.1E-20 147.8 18.7 196 123-332 75-276 (452)
31 2ft3_A Biglycan; proteoglycan, 99.7 5.1E-16 1.7E-20 142.3 17.2 196 118-332 73-274 (332)
32 3zyj_A Leucine-rich repeat-con 99.7 6.3E-16 2.2E-20 147.2 18.5 200 117-331 82-288 (440)
33 3vq2_A TLR4, TOLL-like recepto 99.7 1.9E-16 6.3E-21 156.8 15.3 260 51-332 262-531 (606)
34 1ozn_A Reticulon 4 receptor; N 99.7 7.6E-16 2.6E-20 138.0 17.7 197 122-332 31-235 (285)
35 3bz5_A Internalin-J, INLJ; leu 99.7 8.6E-16 2.9E-20 147.0 18.4 258 49-340 41-325 (457)
36 3zyj_A Leucine-rich repeat-con 99.7 1E-15 3.4E-20 145.8 18.5 196 123-332 64-265 (440)
37 3t6q_A CD180 antigen; protein- 99.7 1E-15 3.4E-20 151.6 18.9 201 119-332 274-486 (606)
38 3bz5_A Internalin-J, INLJ; leu 99.7 1E-15 3.5E-20 146.5 17.6 190 119-331 144-348 (457)
39 3j0a_A TOLL-like receptor 5; m 99.7 2.5E-15 8.5E-20 154.4 20.8 271 48-332 22-372 (844)
40 1p9a_G Platelet glycoprotein I 99.7 2.3E-15 7.9E-20 135.4 18.0 195 119-331 6-204 (290)
41 2z81_A CD282 antigen, TOLL-lik 99.7 1.1E-15 3.6E-20 149.5 17.1 269 49-332 25-420 (549)
42 1o6v_A Internalin A; bacterial 99.7 2E-15 6.7E-20 144.9 17.9 81 245-332 261-341 (466)
43 1ziw_A TOLL-like receptor 3; i 99.7 2.6E-15 8.9E-20 150.6 18.3 201 118-331 400-618 (680)
44 2z7x_B TOLL-like receptor 1, v 99.7 2.5E-15 8.6E-20 146.0 17.2 129 198-332 321-454 (520)
45 2z66_A Variable lymphocyte rec 99.6 8.7E-16 3E-20 139.0 12.7 223 49-306 27-257 (306)
46 2z81_A CD282 antigen, TOLL-lik 99.6 4.2E-15 1.4E-19 145.3 17.7 273 47-331 47-440 (549)
47 1o6v_A Internalin A; bacterial 99.6 7.6E-15 2.6E-19 140.8 19.2 167 119-306 173-340 (466)
48 1wwl_A Monocyte differentiatio 99.6 1.5E-15 5.2E-20 138.0 13.6 198 121-332 93-306 (312)
49 2z7x_B TOLL-like receptor 1, v 99.6 3.2E-15 1.1E-19 145.2 16.6 149 176-332 323-478 (520)
50 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 1.4E-14 4.9E-19 142.1 20.7 127 198-332 350-483 (562)
51 3oja_A Leucine-rich immune mol 99.6 3.1E-15 1.1E-19 144.3 15.6 196 117-334 52-249 (487)
52 3o53_A Protein LRIM1, AGAP0063 99.6 3.2E-15 1.1E-19 136.1 14.7 193 118-333 53-248 (317)
53 3j0a_A TOLL-like receptor 5; m 99.6 9E-15 3.1E-19 150.3 19.7 275 47-332 45-391 (844)
54 1ziw_A TOLL-like receptor 3; i 99.6 2E-14 6.7E-19 144.2 21.2 198 124-332 382-594 (680)
55 1h6u_A Internalin H; cell adhe 99.6 4.6E-15 1.6E-19 134.6 14.5 186 122-331 40-226 (308)
56 2xwt_C Thyrotropin receptor; s 99.6 2.7E-15 9.1E-20 130.9 12.2 178 118-309 50-237 (239)
57 1xku_A Decorin; proteoglycan, 99.6 2.2E-14 7.5E-19 131.2 18.4 204 118-339 71-279 (330)
58 2z62_A TOLL-like receptor 4, v 99.6 1.4E-14 4.9E-19 129.0 16.6 200 123-338 28-246 (276)
59 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 1.2E-14 4E-19 142.8 17.4 108 225-338 353-465 (562)
60 2z63_A TOLL-like receptor 4, v 99.6 5.6E-15 1.9E-19 145.0 15.1 198 120-331 322-527 (570)
61 2o6q_A Variable lymphocyte rec 99.6 3.3E-14 1.1E-18 126.4 18.5 149 176-331 60-214 (270)
62 4ay9_X Follicle-stimulating ho 99.6 1.5E-14 5.3E-19 133.5 15.6 198 119-330 50-254 (350)
63 1jl5_A Outer protein YOPM; leu 99.6 4.8E-14 1.6E-18 134.7 19.5 177 123-332 173-367 (454)
64 1ozn_A Reticulon 4 receptor; N 99.6 2.7E-14 9.3E-19 127.8 16.3 177 118-306 51-234 (285)
65 2z80_A TOLL-like receptor 2, v 99.6 8.7E-15 3E-19 135.2 12.9 177 123-313 52-236 (353)
66 3g06_A SSPH2 (leucine-rich rep 99.6 3.5E-14 1.2E-18 140.3 17.4 176 122-333 120-295 (622)
67 3o53_A Protein LRIM1, AGAP0063 99.6 6.2E-15 2.1E-19 134.2 11.1 195 120-339 31-230 (317)
68 2ast_B S-phase kinase-associat 99.6 9.4E-16 3.2E-20 140.5 5.1 208 119-339 89-309 (336)
69 2ast_B S-phase kinase-associat 99.6 1.8E-15 6E-20 138.7 6.6 199 123-332 70-282 (336)
70 1p9a_G Platelet glycoprotein I 99.6 8.4E-14 2.9E-18 125.1 16.4 172 143-332 6-182 (290)
71 3g06_A SSPH2 (leucine-rich rep 99.5 2.1E-13 7.3E-18 134.7 19.5 179 121-339 99-277 (622)
72 3oja_A Leucine-rich immune mol 99.5 2.7E-14 9.3E-19 137.7 12.6 190 121-332 32-224 (487)
73 4ay9_X Follicle-stimulating ho 99.5 8.2E-14 2.8E-18 128.6 15.1 204 123-339 30-240 (350)
74 1h6u_A Internalin H; cell adhe 99.5 9.2E-14 3.1E-18 126.0 14.1 176 118-316 58-234 (308)
75 2o6q_A Variable lymphocyte rec 99.5 2.4E-13 8.2E-18 120.8 16.5 171 123-306 37-214 (270)
76 4glp_A Monocyte differentiatio 99.5 1.5E-13 5.1E-18 124.6 15.4 193 122-331 90-303 (310)
77 2z63_A TOLL-like receptor 4, v 99.5 4.8E-14 1.7E-18 138.2 13.1 243 48-310 280-530 (570)
78 3rfs_A Internalin B, repeat mo 99.5 1.8E-13 6.2E-18 121.7 15.4 175 119-309 37-216 (272)
79 4g8a_A TOLL-like receptor 4; l 99.5 3.4E-13 1.2E-17 133.6 18.4 103 225-331 469-576 (635)
80 2z62_A TOLL-like receptor 4, v 99.5 2.9E-13 9.8E-18 120.6 13.6 176 118-306 47-233 (276)
81 1wwl_A Monocyte differentiatio 99.5 6.6E-14 2.2E-18 127.1 8.9 199 125-338 65-289 (312)
82 3m19_A Variable lymphocyte rec 99.5 1.1E-12 3.6E-17 115.3 16.1 169 123-306 14-188 (251)
83 3rfs_A Internalin B, repeat mo 99.5 1E-12 3.6E-17 116.8 16.2 199 123-339 19-228 (272)
84 3cvr_A Invasion plasmid antige 99.5 4.6E-13 1.6E-17 130.9 14.7 175 124-333 60-241 (571)
85 4ezg_A Putative uncharacterize 99.5 8.2E-13 2.8E-17 111.6 13.5 150 120-306 41-190 (197)
86 1h6t_A Internalin B; cell adhe 99.5 4.7E-13 1.6E-17 120.3 12.3 173 119-314 42-215 (291)
87 3m19_A Variable lymphocyte rec 99.4 1.9E-12 6.5E-17 113.7 15.4 152 123-286 35-192 (251)
88 4ezg_A Putative uncharacterize 99.4 3.5E-13 1.2E-17 113.9 10.1 129 118-258 61-190 (197)
89 1h6t_A Internalin B; cell adhe 99.4 1.6E-12 5.5E-17 116.8 12.0 168 143-332 42-210 (291)
90 4glp_A Monocyte differentiatio 99.4 2.1E-12 7E-17 117.1 10.9 171 120-306 114-303 (310)
91 1m9s_A Internalin B; cell inva 99.4 2.1E-12 7.2E-17 127.4 10.9 167 119-306 39-206 (605)
92 2p1m_B Transport inhibitor res 99.3 1.6E-13 5.4E-18 135.2 1.2 127 200-331 288-441 (594)
93 1xeu_A Internalin C; cellular 99.3 1.6E-12 5.6E-17 115.0 7.6 145 143-306 37-181 (263)
94 3ogk_B Coronatine-insensitive 99.3 1.4E-13 4.8E-18 135.7 0.5 152 176-333 341-524 (592)
95 1m9s_A Internalin B; cell inva 99.3 6.9E-12 2.4E-16 123.7 12.1 170 143-333 39-208 (605)
96 2p1m_B Transport inhibitor res 99.3 2.1E-13 7.3E-18 134.3 0.5 123 122-255 104-241 (594)
97 2ca6_A RAN GTPase-activating p 99.3 3.3E-13 1.1E-17 126.1 1.7 182 119-306 90-312 (386)
98 4g8a_A TOLL-like receptor 4; l 99.3 4.7E-11 1.6E-15 118.1 16.3 198 121-331 347-551 (635)
99 3ogk_B Coronatine-insensitive 99.3 9.8E-13 3.3E-17 129.6 3.8 178 119-305 216-411 (592)
100 2ca6_A RAN GTPase-activating p 99.3 3.9E-13 1.3E-17 125.6 0.8 102 226-332 188-313 (386)
101 1dce_A Protein (RAB geranylger 99.3 2.8E-14 9.7E-19 139.8 -7.3 193 120-327 346-565 (567)
102 3cvr_A Invasion plasmid antige 99.3 4E-11 1.4E-15 117.2 14.1 162 122-315 79-247 (571)
103 3e6j_A Variable lymphocyte rec 99.2 1E-10 3.4E-15 101.2 12.6 148 124-286 20-172 (229)
104 1z7x_W Ribonuclease inhibitor; 99.2 1.8E-12 6.3E-17 123.6 1.3 209 116-332 106-380 (461)
105 2v9t_B SLIT homolog 2 protein 99.2 1.6E-10 5.4E-15 99.3 13.2 143 150-306 14-161 (220)
106 1xeu_A Internalin C; cellular 99.2 7.8E-11 2.7E-15 104.1 11.2 150 119-288 37-187 (263)
107 2xot_A Amphoterin-induced prot 99.2 7.6E-11 2.6E-15 109.1 11.3 166 126-306 21-198 (361)
108 2v70_A SLIT-2, SLIT homolog 2 99.2 2.5E-10 8.6E-15 98.0 12.9 142 126-281 14-162 (220)
109 2ell_A Acidic leucine-rich nuc 99.2 1E-10 3.6E-15 95.8 9.6 134 122-267 23-164 (168)
110 2o6s_A Variable lymphocyte rec 99.2 5E-10 1.7E-14 95.1 13.8 160 150-331 10-174 (208)
111 2o6s_A Variable lymphocyte rec 99.2 5.5E-10 1.9E-14 94.8 14.0 171 126-319 10-186 (208)
112 2v9t_B SLIT homolog 2 protein 99.1 5.6E-10 1.9E-14 95.9 13.1 146 126-286 14-165 (220)
113 2ell_A Acidic leucine-rich nuc 99.1 1.2E-10 4.1E-15 95.5 8.4 87 226-316 72-164 (168)
114 2xot_A Amphoterin-induced prot 99.1 2.3E-10 7.9E-15 105.8 11.2 166 150-331 21-198 (361)
115 3e6j_A Variable lymphocyte rec 99.1 1E-09 3.5E-14 94.8 14.1 144 149-306 21-168 (229)
116 1dce_A Protein (RAB geranylger 99.1 2.6E-13 9E-18 132.9 -10.0 180 143-339 345-549 (567)
117 3goz_A Leucine-rich repeat-con 99.1 2.8E-11 9.6E-16 112.0 4.1 15 143-157 46-61 (362)
118 2v70_A SLIT-2, SLIT homolog 2 99.1 6.1E-10 2.1E-14 95.6 11.3 143 150-306 14-162 (220)
119 3goz_A Leucine-rich repeat-con 99.1 7.4E-12 2.5E-16 115.9 -0.9 11 51-61 23-33 (362)
120 1z7x_W Ribonuclease inhibitor; 99.1 2.1E-11 7E-16 116.3 1.1 198 119-332 52-294 (461)
121 2je0_A Acidic leucine-rich nuc 99.1 2.6E-10 9E-15 91.5 7.4 126 121-257 15-148 (149)
122 2je0_A Acidic leucine-rich nuc 99.0 3.8E-10 1.3E-14 90.5 7.5 123 176-305 16-148 (149)
123 4b8c_D Glucose-repressible alc 99.0 1.9E-10 6.6E-15 115.9 6.8 152 116-282 217-369 (727)
124 2wfh_A SLIT homolog 2 protein 99.0 2.4E-09 8.3E-14 89.9 12.0 100 226-330 32-134 (193)
125 3sb4_A Hypothetical leucine ri 99.0 3.1E-09 1.1E-13 96.8 12.0 76 248-329 225-304 (329)
126 1a9n_A U2A', U2A'; complex (nu 98.9 1.6E-09 5.6E-14 89.4 7.7 128 119-259 15-150 (176)
127 2o6r_A Variable lymphocyte rec 98.9 1.3E-08 4.3E-13 84.0 11.9 121 179-306 9-133 (177)
128 1w8a_A SLIT protein; signaling 98.9 1.3E-08 4.3E-13 85.3 11.3 121 179-306 10-135 (192)
129 1w8a_A SLIT protein; signaling 98.9 1.1E-08 3.9E-13 85.6 10.4 123 150-286 11-139 (192)
130 2wfh_A SLIT homolog 2 protein 98.8 1.4E-08 4.8E-13 85.2 10.0 123 150-286 13-139 (193)
131 1a9n_A U2A', U2A'; complex (nu 98.8 4.8E-09 1.6E-13 86.6 6.2 77 176-258 18-97 (176)
132 4b8c_D Glucose-repressible alc 98.8 7.4E-09 2.5E-13 104.4 8.0 153 147-313 173-330 (727)
133 2o6r_A Variable lymphocyte rec 98.7 6.7E-08 2.3E-12 79.6 11.0 124 149-286 9-137 (177)
134 3sb4_A Hypothetical leucine ri 98.6 1.3E-07 4.4E-12 86.1 10.9 179 122-318 100-316 (329)
135 1ds9_A Outer arm dynein; leuci 98.6 1.6E-10 5.6E-15 97.4 -8.0 18 139-156 40-57 (198)
136 1ds9_A Outer arm dynein; leuci 98.6 1.1E-09 3.7E-14 92.3 -3.3 124 118-255 43-180 (198)
137 3g39_A Variable lymphocyte rec 98.6 1.9E-07 6.4E-12 76.5 9.0 97 204-306 12-111 (170)
138 2r9u_A Variable lymphocyte rec 98.6 2.2E-07 7.5E-12 76.4 9.2 96 205-306 16-114 (174)
139 4fdw_A Leucine rich hypothetic 98.6 1.5E-06 5.1E-11 81.3 16.0 186 124-330 158-353 (401)
140 4fdw_A Leucine rich hypothetic 98.6 2.7E-06 9.1E-11 79.6 17.5 194 117-330 174-378 (401)
141 2r9u_A Variable lymphocyte rec 98.5 4.6E-07 1.6E-11 74.5 8.6 99 227-332 14-115 (174)
142 3e4g_A ATP synthase subunit S, 98.5 1.4E-07 4.7E-12 77.2 4.9 86 226-313 62-154 (176)
143 3g39_A Variable lymphocyte rec 98.4 6E-07 2.1E-11 73.5 8.3 99 226-331 10-111 (170)
144 2ifg_A High affinity nerve gro 98.4 7.6E-07 2.6E-11 81.4 9.1 96 207-306 14-112 (347)
145 2ra8_A Uncharacterized protein 98.3 1.3E-06 4.6E-11 80.3 7.6 151 119-281 135-316 (362)
146 2ra8_A Uncharacterized protein 98.3 1.9E-06 6.6E-11 79.3 8.5 14 143-156 135-148 (362)
147 2ifg_A High affinity nerve gro 98.2 6.1E-06 2.1E-10 75.3 10.0 100 128-236 13-114 (347)
148 3e4g_A ATP synthase subunit S, 98.1 1.9E-06 6.4E-11 70.5 4.8 37 148-190 62-98 (176)
149 3un9_A NLR family member X1; l 97.8 3.8E-06 1.3E-10 77.7 0.7 126 122-259 71-221 (372)
150 3un9_A NLR family member X1; l 97.7 4.7E-06 1.6E-10 77.1 0.3 158 146-313 71-253 (372)
151 4gt6_A Cell surface protein; l 97.4 0.0063 2.2E-07 56.3 17.2 31 176-208 159-189 (394)
152 4fs7_A Uncharacterized protein 97.4 0.0023 7.9E-08 59.2 14.2 187 119-329 181-373 (394)
153 4h09_A Hypothetical leucine ri 97.2 0.036 1.2E-06 50.7 19.2 58 118-186 64-122 (379)
154 4fs7_A Uncharacterized protein 97.2 0.0059 2E-07 56.4 13.8 117 200-329 229-350 (394)
155 4gt6_A Cell surface protein; l 97.1 0.02 6.9E-07 52.8 16.4 80 244-330 283-365 (394)
156 4h09_A Hypothetical leucine ri 96.8 0.053 1.8E-06 49.6 16.9 79 245-329 259-340 (379)
157 1io0_A Tropomodulin; LRR prote 96.0 0.0041 1.4E-07 51.1 3.6 12 295-306 149-160 (185)
158 3rw6_A Nuclear RNA export fact 96.0 0.0048 1.6E-07 53.9 3.9 34 122-156 169-205 (267)
159 3rw6_A Nuclear RNA export fact 95.9 0.0063 2.2E-07 53.1 4.2 80 176-257 169-259 (267)
160 1io0_A Tropomodulin; LRR prote 95.7 0.0033 1.1E-07 51.7 1.8 103 226-332 37-161 (185)
161 3qfl_A MLA10; coiled-coil, (CC 95.3 0.0042 1.4E-07 46.8 0.8 31 7-37 54-84 (115)
162 3rfe_A Platelet glycoprotein I 93.3 0.11 3.7E-06 39.8 4.9 41 264-306 24-64 (130)
163 3rfe_A Platelet glycoprotein I 84.8 1.2 4.1E-05 33.8 4.8 33 202-235 32-65 (130)
164 1pgv_A TMD-1, tropomodulin TMD 67.5 4.1 0.00014 33.4 3.4 59 199-258 39-107 (197)
165 1pgv_A TMD-1, tropomodulin TMD 48.9 16 0.00055 29.8 3.9 36 122-157 40-80 (197)
166 2lz0_A Uncharacterized protein 31.1 57 0.0019 23.0 4.1 34 271-306 19-52 (100)
167 3ro3_B Minsc, peptide of prote 29.9 24 0.00082 17.1 1.2 12 9-20 9-20 (22)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=1.5e-20 Score=172.46 Aligned_cols=201 Identities=21% Similarity=0.300 Sum_probs=111.3
Q ss_pred cccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccccccc
Q 037573 118 VIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHEL 197 (357)
Q Consensus 118 ~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l 197 (357)
.++.+++|++|+++++. +..+|..++.+++|++|+++++ .+..+|..+.. +++|+.|++++|.....+|..+
T Consensus 99 ~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~------l~~L~~L~L~~n~~~~~~p~~~ 170 (328)
T 4fcg_A 99 QAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARN-PLRALPASIAS------LNRLRELSIRACPELTELPEPL 170 (328)
T ss_dssp CGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGG------CTTCCEEEEEEETTCCCCCSCS
T ss_pred hhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCC-ccccCcHHHhc------CcCCCEEECCCCCCccccChhH
Confidence 34556666666666554 3355655666666666666653 34455554444 5666666666655555555544
Q ss_pred CC---------CCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC
Q 037573 198 HK---------LSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN 268 (357)
Q Consensus 198 ~~---------l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~ 268 (357)
.. +++|+.|+++++ .+..+|.....+++|++|++++|. +..+|..+..+++|++|++++|.....+|..
T Consensus 171 ~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~ 248 (328)
T 4fcg_A 171 ASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPI 248 (328)
T ss_dssp EEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCCC
T ss_pred hhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhhhHHH
Confidence 33 566666666653 444454422222366666665533 4455555666666666666665555555543
Q ss_pred -CCCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecc
Q 037573 269 -DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIR 330 (357)
Q Consensus 269 -~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~ 330 (357)
+.+++|++|++++|+....++.. +..+++|++|++++ |+.++.+|..+..+++|+.+.+.
T Consensus 249 ~~~l~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~L~~-n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 249 FGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRG-CVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp TTCCCCCCEEECTTCTTCCBCCTT-GGGCTTCCEEECTT-CTTCCCCCGGGGGSCTTCEEECC
T ss_pred hcCCCCCCEEECCCCCchhhcchh-hhcCCCCCEEeCCC-CCchhhccHHHhhccCceEEeCC
Confidence 33556666666665544444433 55666666666666 66666666655555555555443
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=1.9e-20 Score=171.66 Aligned_cols=206 Identities=22% Similarity=0.320 Sum_probs=176.1
Q ss_pred CCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCC
Q 037573 122 LCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLS 201 (357)
Q Consensus 122 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~ 201 (357)
.++++.|+++++. +..+|..++.+++|++|+++++ .+..+|..+.. +++|++|++++| .+..+|..++.++
T Consensus 80 ~~~l~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~------l~~L~~L~Ls~n-~l~~lp~~l~~l~ 150 (328)
T 4fcg_A 80 QPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQ------FAGLETLTLARN-PLRALPASIASLN 150 (328)
T ss_dssp STTCCEEEEESSC-CSSCCSCGGGGTTCSEEEEESS-CCCCCCSCGGG------GTTCSEEEEESC-CCCCCCGGGGGCT
T ss_pred ccceeEEEccCCC-chhcChhhhhCCCCCEEECCCC-CccchhHHHhc------cCCCCEEECCCC-ccccCcHHHhcCc
Confidence 5789999999976 6789998999999999999985 56688877666 999999999996 4678999999999
Q ss_pred CccEEEecCCCCCcccCCCCCC---------CCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC-CCC
Q 037573 202 RLQQIEIRNCPSLVSFPERGLP---------STNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN-DYP 271 (357)
Q Consensus 202 ~L~~L~l~~c~~l~~l~~~~~~---------~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~ 271 (357)
+|+.|++++|..+..+|..... +++|++|+++++ .++.+|..+..+++|++|++++| .+..+|.. +.+
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N-~l~~l~~~l~~l 228 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNS-PLSALGPAIHHL 228 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESS-CCCCCCGGGGGC
T ss_pred CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCC-CCCcCchhhccC
Confidence 9999999999888888874411 349999999986 47789989999999999999995 56667654 447
Q ss_pred CCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCcccccccc
Q 037573 272 TNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYISS 340 (357)
Q Consensus 272 ~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~~L~~l~~ 340 (357)
++|+.|++++|+....++. .+..+++|++|++++ |+.++.+|..+..+++|++|++++|+.+..++.
T Consensus 229 ~~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~-n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 229 PKLEELDLRGCTALRNYPP-IFGGRAPLKRLILKD-CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp TTCCEEECTTCTTCCBCCC-CTTCCCCCCEEECTT-CTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred CCCCEEECcCCcchhhhHH-HhcCCCCCCEEECCC-CCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence 8999999999776666655 478999999999999 999999999888899999999999988888764
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=9.7e-20 Score=165.91 Aligned_cols=252 Identities=14% Similarity=0.049 Sum_probs=185.6
Q ss_pred ccceEEeeccCCCCC---CCCccccccchhHHHhhhcccccccchhhhhhhccCCccccccccccccCCcccccCCCccc
Q 037573 50 SKAWKLIIRTCCSNF---NTPSLMFNASMRYKLKDSTTRLQEIDMEKEQLILKSNSGERSKKVGQRLSTTSVIQVLCRLK 126 (357)
Q Consensus 50 ~~l~~l~l~~c~~~~---~~~~l~~l~~L~~l~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 126 (357)
.+++.++++++.... ..+.+..+++|+.+.+.+...+... .+..++.+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~-------------------------~p~~l~~l~~L~ 104 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP-------------------------IPPAIAKLTQLH 104 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC-------------------------CCGGGGGCTTCS
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccccc-------------------------CChhHhcCCCCC
Confidence 589999999887442 3446777777777777643322211 133477899999
Q ss_pred EEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCC-CccE
Q 037573 127 YLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLS-RLQQ 205 (357)
Q Consensus 127 ~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~-~L~~ 205 (357)
+|+++++...+.+|..++.+++|++|+++++.-...+|..+.. +++|++|+++++.....+|..++.++ +|+.
T Consensus 105 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~ 178 (313)
T 1ogq_A 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS------LPNLVGITFDGNRISGAIPDSYGSFSKLFTS 178 (313)
T ss_dssp EEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG------CTTCCEEECCSSCCEEECCGGGGCCCTTCCE
T ss_pred EEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhc------CCCCCeEECcCCcccCcCCHHHhhhhhcCcE
Confidence 9999998755578888999999999999986433367766666 89999999999754447899999998 9999
Q ss_pred EEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEEecCCCCc
Q 037573 206 IEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIF 285 (357)
Q Consensus 206 L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l 285 (357)
|+++++.-...+|.....+ +|++|+++++.--...|..+..+++|++|+++++.-...++....+++|++|++++ +.+
T Consensus 179 L~L~~N~l~~~~~~~~~~l-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~-N~l 256 (313)
T 1ogq_A 179 MTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRN-NRI 256 (313)
T ss_dssp EECCSSEEEEECCGGGGGC-CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCS-SCC
T ss_pred EECcCCeeeccCChHHhCC-cccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcC-Ccc
Confidence 9999864333444432222 49999999976545667788999999999999964333444445578999999999 667
Q ss_pred eecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCcccc
Q 037573 286 KSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLE 336 (357)
Q Consensus 286 ~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~~L~ 336 (357)
+...+..+..+++|++|++++ |.--+.+|.. ..+++|+.|++.+.+.+-
T Consensus 257 ~~~~p~~l~~l~~L~~L~Ls~-N~l~~~ip~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 257 YGTLPQGLTQLKFLHSLNVSF-NNLCGEIPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp EECCCGGGGGCTTCCEEECCS-SEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred cCcCChHHhcCcCCCEEECcC-CcccccCCCC-ccccccChHHhcCCCCcc
Confidence 744444588999999999998 5433467765 467788888887766554
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.80 E-value=1.6e-19 Score=183.77 Aligned_cols=231 Identities=11% Similarity=0.015 Sum_probs=138.7
Q ss_pred cccccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccccc
Q 037573 116 TSVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPH 195 (357)
Q Consensus 116 ~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~ 195 (357)
+..++.+++|++|+++++...+.+|..++.+++|++|++++|.-...+|..+.. +++|+.|++++|.....+|.
T Consensus 459 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~------l~~L~~L~L~~N~l~~~~p~ 532 (768)
T 3rgz_A 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR------LENLAILKLSNNSFSGNIPA 532 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG------CTTCCEEECCSSCCEEECCG
T ss_pred CHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc------CCCCCEEECCCCcccCcCCH
Confidence 344566777777777777655566766777777777777776544456655555 77788888887765556777
Q ss_pred ccCCCCCccEEEecCCCCCcccCCCC------------------------------------------------------
Q 037573 196 ELHKLSRLQQIEIRNCPSLVSFPERG------------------------------------------------------ 221 (357)
Q Consensus 196 ~l~~l~~L~~L~l~~c~~l~~l~~~~------------------------------------------------------ 221 (357)
.++.+++|+.|+++++.-...+|...
T Consensus 533 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 612 (768)
T 3rgz_A 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCC
T ss_pred HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccc
Confidence 77778888888877654332332200
Q ss_pred ----------------CCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC-CCCCCcceEEecCCCC
Q 037573 222 ----------------LPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN-DYPTNLTILKITDVNI 284 (357)
Q Consensus 222 ----------------~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~ 284 (357)
-.+++|++|+++++.-...+|..++.++.|+.|+++++.-...+|.. +.+++|++|++++ +.
T Consensus 613 ~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~-N~ 691 (768)
T 3rgz_A 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS-NK 691 (768)
T ss_dssp SCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS-SC
T ss_pred cccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCC-Cc
Confidence 00136777888776655577777888888888888875433355554 4467888888888 56
Q ss_pred ceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCccccc------ccccccccccccCCCccc
Q 037573 285 FKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEY------ISSTVLDLHFCNYIPRDV 355 (357)
Q Consensus 285 l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~~L~~------l~~~~~~~~~~~~i~~~~ 355 (357)
++...+..+..+++|++|++++ |+--+.+|... .+.++....+.+.+.|=- -...+-+|.+|.|+|+.+
T Consensus 692 l~g~ip~~l~~l~~L~~L~ls~-N~l~g~iP~~~-~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 692 LDGRIPQAMSALTMLTEIDLSN-NNLSGPIPEMG-QFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp CEECCCGGGGGCCCCSEEECCS-SEEEEECCSSS-SGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred ccCcCChHHhCCCCCCEEECcC-CcccccCCCch-hhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 6644444577888888888887 54445667554 455555555555443321 122677888898888765
No 5
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.77 E-value=1.3e-17 Score=160.41 Aligned_cols=201 Identities=21% Similarity=0.285 Sum_probs=134.6
Q ss_pred ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhcccc-ccccccccccccccEEEeeCCCCCccc-ccc
Q 037573 119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLEL-SSVAEMFAIITSFENIMVNGCDNLKCL-PHE 196 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~-~~~L~~L~~l~~L~~L~l~~c~~l~~l-p~~ 196 (357)
+..+++|++|+++++......+..+..+++|++|+++++ .+..++.. +.. +++|+.|+++++. +..+ +..
T Consensus 124 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~------l~~L~~L~l~~n~-i~~~~~~~ 195 (477)
T 2id5_A 124 FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSH------LHGLIVLRLRHLN-INAIRDYS 195 (477)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTT------CTTCCEEEEESCC-CCEECTTC
T ss_pred ccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcc------cCCCcEEeCCCCc-CcEeChhh
Confidence 444555555555554322222334555555666666553 33333322 123 6777777777754 3444 335
Q ss_pred cCCCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhH-hhhccCCcccceeeccCcCccccCCC--CCCCC
Q 037573 197 LHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALL-NGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTN 273 (357)
Q Consensus 197 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~ 273 (357)
+..+++|+.|++++|..+..++...+...+|++|++++|. ++.+| ..+..+++|++|+++++ .+..++.. ..+++
T Consensus 196 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~ 273 (477)
T 2id5_A 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLR 273 (477)
T ss_dssp SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSS-CCCEECTTSCTTCTT
T ss_pred cccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCC-cCCccChhhcccccc
Confidence 6677888888888887777777655555588888888864 56665 46788899999999885 56666654 33678
Q ss_pred cceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCC-CCCCCcceEecccC
Q 037573 274 LTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEE-IGSTSLTRLWIRDF 332 (357)
Q Consensus 274 L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~-~~~~sL~~L~l~~c 332 (357)
|+.|++++ +.++.+.+..+..+++|++|++++ +.+..++... ..+++|++|++++.
T Consensus 274 L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 274 LQEIQLVG-GQLAVVEPYAFRGLNYLRVLNVSG--NQLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp CCEEECCS-SCCSEECTTTBTTCTTCCEEECCS--SCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred CCEEECCC-CccceECHHHhcCcccCCEEECCC--CcCceeCHhHcCCCcccCEEEccCC
Confidence 99999998 667777666678889999999998 6788877643 35688888888753
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.77 E-value=3.9e-18 Score=169.97 Aligned_cols=266 Identities=14% Similarity=0.126 Sum_probs=178.4
Q ss_pred CcccceEEeeccCCCCCCC-CccccccchhHHHhhhccccc--ccchhhhhh-------hccCCccccccccccccCCcc
Q 037573 48 STSKAWKLIIRTCCSNFNT-PSLMFNASMRYKLKDSTTRLQ--EIDMEKEQL-------ILKSNSGERSKKVGQRLSTTS 117 (357)
Q Consensus 48 ~~~~l~~l~l~~c~~~~~~-~~l~~l~~L~~l~~~~~~~l~--~i~~~~~~l-------~~~~~~~~~~~~~~~~~~~~~ 117 (357)
..++++.|++++|.....+ +.++.+++|+.+.+.++..+. .++.....+ .+......... ...++...
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~--l~~ip~~~ 324 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN--LKTFPVET 324 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC--CSSCCCHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc--CCccCchh
Confidence 5678999999999844444 468899999999988876444 355544332 22222211111 11222111
Q ss_pred cccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhcccccccccccccccc-ccEEEeeCCCCCcccccc
Q 037573 118 VIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITS-FENIMVNGCDNLKCLPHE 196 (357)
Q Consensus 118 ~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~-L~~L~l~~c~~l~~lp~~ 196 (357)
.++.+++|+.|+++++...+.+| .++.+++|++|+++++ .+..+|..+.. +++ |+.|+++++. +..+|..
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N-~l~~lp~~l~~------l~~~L~~L~Ls~N~-l~~lp~~ 395 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN-QITEIPANFCG------FTEQVENLSFAHNK-LKYIPNI 395 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS-EEEECCTTSEE------ECTTCCEEECCSSC-CSSCCSC
T ss_pred hhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC-ccccccHhhhh------hcccCcEEEccCCc-Ccccchh
Confidence 57888999999998887544788 6888889999999885 56677776666 777 8889988864 5678877
Q ss_pred cCCCC--CccEEEecCCCCCcccCCCC-------CCCCCcceEEeccCCcchhhHhhh-ccCCcccceeeccCcCccccC
Q 037573 197 LHKLS--RLQQIEIRNCPSLVSFPERG-------LPSTNLTAVCVINCEKLEALLNGI-HRLTSHQQLTVEQCPGIVAIP 266 (357)
Q Consensus 197 l~~l~--~L~~L~l~~c~~l~~l~~~~-------~~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~l~ 266 (357)
+...+ +|+.|+++++.-....|... +.+++|++|+++++. ++.+|..+ ..+++|++|+++++ .+..+|
T Consensus 396 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~ 473 (636)
T 4eco_A 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGN-MLTEIP 473 (636)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSS-CCSBCC
T ss_pred hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCC-CCCCcC
Confidence 76644 78888888764433333211 133478888887754 55666543 45788888888774 566666
Q ss_pred CCCC--CC-------CcceEEecCCCCceeccccccc--ccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecc
Q 037573 267 ENDY--PT-------NLTILKITDVNIFKSLFQWGLH--RLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIR 330 (357)
Q Consensus 267 ~~~~--~~-------~L~~L~l~~c~~l~~~~~~~l~--~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~ 330 (357)
...+ .. +|+.|++++ +.++.++.. +. .+++|++|++++ +.+..+|..+..+++|++|+++
T Consensus 474 ~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~-~~~~~l~~L~~L~Ls~--N~l~~ip~~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 474 KNSLKDENENFKNTYLLTSIDLRF-NKLTKLSDD-FRATTLPYLVGIDLSY--NSFSKFPTQPLNSSTLKGFGIR 544 (636)
T ss_dssp SSSSEETTEECTTGGGCCEEECCS-SCCCBCCGG-GSTTTCTTCCEEECCS--SCCSSCCCGGGGCSSCCEEECC
T ss_pred HHHhccccccccccCCccEEECcC-CcCCccChh-hhhccCCCcCEEECCC--CCCCCcChhhhcCCCCCEEECC
Confidence 5532 11 788888887 566666554 44 778888888887 5666677777677788888774
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.77 E-value=1.3e-17 Score=159.45 Aligned_cols=129 Identities=12% Similarity=-0.007 Sum_probs=72.4
Q ss_pred ccceEEeeccCCCCCC-CCccccccchhHHHhhhcccccccch-hhhhh-hccCCccccccccccccCCcccccCCCccc
Q 037573 50 SKAWKLIIRTCCSNFN-TPSLMFNASMRYKLKDSTTRLQEIDM-EKEQL-ILKSNSGERSKKVGQRLSTTSVIQVLCRLK 126 (357)
Q Consensus 50 ~~l~~l~l~~c~~~~~-~~~l~~l~~L~~l~~~~~~~l~~i~~-~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 126 (357)
++++.|+++++..... ...+..+++|+.+.+.++.....+.. .+..+ .++......... . -..+..++.+++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l--~-~~~~~~~~~l~~L~ 106 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF--L-QLETGAFNGLANLE 106 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT--C-EECTTTTTTCTTCC
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc--C-ccChhhccCcccCC
Confidence 5788888887764332 34567777777777766543223321 11111 111111111100 0 01134467788888
Q ss_pred EEeeccCcCccccccc--cCCCCCcCEEeecCCCcchhc-ccc-ccccccccccccccEEEeeCCC
Q 037573 127 YLELIDCECLVNLPQA--LHCLSSLTEITVAGCTKLVSF-LEL-SSVAEMFAIITSFENIMVNGCD 188 (357)
Q Consensus 127 ~L~l~~~~~l~~lp~~--~~~l~~L~~L~i~~c~~l~~~-~~~-~~~L~~L~~l~~L~~L~l~~c~ 188 (357)
+|++++|..-+.++.. ++.+++|++|+++++. +..+ |.. +.. +++|+.|+++++.
T Consensus 107 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~------l~~L~~L~L~~n~ 165 (455)
T 3v47_A 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLN------MRRFHVLDLTFNK 165 (455)
T ss_dssp EEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGG------CTTCCEEECTTCC
T ss_pred EEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCC------CCcccEEeCCCCc
Confidence 8888887643334443 7778888888888753 4444 332 234 7888888888764
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.77 E-value=2.2e-18 Score=175.43 Aligned_cols=134 Identities=16% Similarity=0.064 Sum_probs=57.0
Q ss_pred ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccC
Q 037573 119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELH 198 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~ 198 (357)
++.+++|++|+++++...+.+|..++.+++|++|+++++.....+|..+.. +++|+.|++++|.....+|..+.
T Consensus 414 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~------l~~L~~L~L~~N~l~~~~p~~l~ 487 (768)
T 3rgz_A 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY------VKTLETLILDFNDLTGEIPSGLS 487 (768)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG------CTTCCEEECCSSCCCSCCCGGGG
T ss_pred HhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcC------CCCceEEEecCCcccCcCCHHHh
Confidence 445555555555555433344545555555555555554333334443333 44444444444332223344444
Q ss_pred CCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeecc
Q 037573 199 KLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQ 258 (357)
Q Consensus 199 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 258 (357)
.+++|+.|++++|.-...+|.....+++|++|++++|.....+|..+..+++|++|++++
T Consensus 488 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 547 (768)
T 3rgz_A 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCS
T ss_pred cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCC
Confidence 444444444444332223332111112444444444333333344444444444444443
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.76 E-value=1.3e-17 Score=170.41 Aligned_cols=266 Identities=15% Similarity=0.152 Sum_probs=182.3
Q ss_pred CcccceEEeeccCCCCCCCC-ccccccchhHHHhhhcccccc--cchhhhhhh--------ccCCccccccccccccCCc
Q 037573 48 STSKAWKLIIRTCCSNFNTP-SLMFNASMRYKLKDSTTRLQE--IDMEKEQLI--------LKSNSGERSKKVGQRLSTT 116 (357)
Q Consensus 48 ~~~~l~~l~l~~c~~~~~~~-~l~~l~~L~~l~~~~~~~l~~--i~~~~~~l~--------~~~~~~~~~~~~~~~~~~~ 116 (357)
..++++.|++++|.....+| .++.+++|+.+.+.++..+.. ++..+..+. +..+...... ...++..
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~--L~~ip~~ 566 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN--LEEFPAS 566 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC--CCBCCCH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc--CCccCCh
Confidence 56789999999998444444 688999999999888764443 555444332 2222211211 1122221
Q ss_pred ccccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhcccccccccccccccc-ccEEEeeCCCCCccccc
Q 037573 117 SVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITS-FENIMVNGCDNLKCLPH 195 (357)
Q Consensus 117 ~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~-L~~L~l~~c~~l~~lp~ 195 (357)
..++.+++|+.|+++++. +..+| .++.+++|+.|+++++ .+..+|..+.. +++ |+.|++++|. +..+|.
T Consensus 567 ~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~Ls~N-~l~~lp~~l~~------l~~~L~~L~Ls~N~-L~~lp~ 636 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDYN-QIEEIPEDFCA------FTDQVEGLGFSHNK-LKYIPN 636 (876)
T ss_dssp HHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEECCSS-CCSCCCTTSCE------ECTTCCEEECCSSC-CCSCCS
T ss_pred hhhhcCCCCCEEECCCCC-cccch-hhcCCCcceEEECcCC-ccccchHHHhh------ccccCCEEECcCCC-CCcCch
Confidence 158889999999999886 45888 6889999999999985 46678876666 788 9999999865 668887
Q ss_pred ccCCCC--CccEEEecCCCCCcccCC-----CCCCCCCcceEEeccCCcchhhHhhh-ccCCcccceeeccCcCccccCC
Q 037573 196 ELHKLS--RLQQIEIRNCPSLVSFPE-----RGLPSTNLTAVCVINCEKLEALLNGI-HRLTSHQQLTVEQCPGIVAIPE 267 (357)
Q Consensus 196 ~l~~l~--~L~~L~l~~c~~l~~l~~-----~~~~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~l~~ 267 (357)
.+..++ +|+.|+++++.-...+|. ..+..++|+.|++++|. +..+|..+ ..+++|++|+++++ .+..+|.
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~ 714 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNN-LMTSIPE 714 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSC-CCSCCCT
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCC-cCCccCh
Confidence 776654 489999988643332221 22233478888887754 56777655 36788888888874 5667766
Q ss_pred CCC--C-------CCcceEEecCCCCceeccccccc--ccCCccEEEEeccCCCCCcCCCCCCCCCCcceEeccc
Q 037573 268 NDY--P-------TNLTILKITDVNIFKSLFQWGLH--RLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRD 331 (357)
Q Consensus 268 ~~~--~-------~~L~~L~l~~c~~l~~~~~~~l~--~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~ 331 (357)
..+ . ++|+.|++++ +.++.++.. +. .+++|+.|++++ +.+..+|..+..+++|+.|++++
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~-N~L~~lp~~-l~~~~l~~L~~L~Ls~--N~L~~lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRF-NKLTSLSDD-FRATTLPYLSNMDVSY--NCFSSFPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCS-SCCCCCCGG-GSTTTCTTCCEEECCS--SCCSSCCCGGGGCTTCCEEECCC
T ss_pred HHhccccccccccCCccEEECCC-CCCccchHH-hhhccCCCcCEEEeCC--CCCCccchhhhcCCCCCEEECCC
Confidence 522 1 2788888888 466666554 44 778888888887 56777777776777888887754
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.75 E-value=5.3e-17 Score=156.18 Aligned_cols=266 Identities=16% Similarity=0.175 Sum_probs=175.7
Q ss_pred ccceEEeeccCCCCCC-CCccccccchhHHHhhhccccccc-chhhhhh-hccCCccccccccccccCCcccccCCCccc
Q 037573 50 SKAWKLIIRTCCSNFN-TPSLMFNASMRYKLKDSTTRLQEI-DMEKEQL-ILKSNSGERSKKVGQRLSTTSVIQVLCRLK 126 (357)
Q Consensus 50 ~~l~~l~l~~c~~~~~-~~~l~~l~~L~~l~~~~~~~l~~i-~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 126 (357)
++++.|+++++..... ...+..+++|+.+.+.++ .+..+ +..+..+ .++.+...... ...++ ...+..+++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~--l~~~~-~~~~~~l~~L~ 107 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNR--LKLIP-LGVFTGLSNLT 107 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC--CCSCC-TTSSTTCTTCC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCc--CCccC-cccccCCCCCC
Confidence 4677888877763222 335667777777777654 23333 2222221 11111111110 01111 22356778888
Q ss_pred EEeeccCcCccccccccCCCCCcCEEeecCCCcchhccc-cccccccccccccccEEEeeCCCCCccccc-ccCCCCCcc
Q 037573 127 YLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLE-LSSVAEMFAIITSFENIMVNGCDNLKCLPH-ELHKLSRLQ 204 (357)
Q Consensus 127 ~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~-~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~ 204 (357)
+|+++++......|..+..+++|++|+++++ .+..++. .+.. +++|+.|++++| .+..+|. .+..+++|+
T Consensus 108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~------l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~ 179 (477)
T 2id5_A 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSG------LNSLEQLTLEKC-NLTSIPTEALSHLHGLI 179 (477)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTT------CTTCCEEEEESC-CCSSCCHHHHTTCTTCC
T ss_pred EEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccC------CCCCCEEECCCC-cCcccChhHhcccCCCc
Confidence 8888887644445666778888888888874 4444433 3334 788999999886 4556653 577889999
Q ss_pred EEEecCCCCCcccCCCC-CCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--CCCCCcceEEecC
Q 037573 205 QIEIRNCPSLVSFPERG-LPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKITD 281 (357)
Q Consensus 205 ~L~l~~c~~l~~l~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~ 281 (357)
.|+++++ .+..++... ..+++|++|++++|..+..+|.......+|++|+++++ .++.+|.. ..+++|+.|++++
T Consensus 180 ~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 180 VLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSY 257 (477)
T ss_dssp EEEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCS
T ss_pred EEeCCCC-cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC-cccccCHHHhcCccccCeeECCC
Confidence 9999875 455554422 22348999999998888888777666778999999885 67766632 3468999999998
Q ss_pred CCCceecccccccccCCccEEEEeccCCCCCcC-CCCCCCCCCcceEecccC
Q 037573 282 VNIFKSLFQWGLHRLNSLKELIVNGEFPDMISF-PQEEIGSTSLTRLWIRDF 332 (357)
Q Consensus 282 c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l-~~~~~~~~sL~~L~l~~c 332 (357)
+.++.++...+..+++|++|++++ +.+..+ |..+..+++|++|+++++
T Consensus 258 -n~l~~~~~~~~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 258 -NPISTIEGSMLHELLRLQEIQLVG--GQLAVVEPYAFRGLNYLRVLNVSGN 306 (477)
T ss_dssp -SCCCEECTTSCTTCTTCCEEECCS--SCCSEECTTTBTTCTTCCEEECCSS
T ss_pred -CcCCccChhhccccccCCEEECCC--CccceECHHHhcCcccCCEEECCCC
Confidence 667777776678899999999998 566665 555557889999998754
No 11
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.75 E-value=2.9e-17 Score=151.31 Aligned_cols=146 Identities=18% Similarity=0.189 Sum_probs=79.0
Q ss_pred cccccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchhhHhhhccCCcccce
Q 037573 176 ITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQL 254 (357)
Q Consensus 176 l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L 254 (357)
+++|+.|++++| .+..++. +..+++|+.++++++ .+..++. ..+ ++|++|++++|. ++.++. +..+++|++|
T Consensus 176 l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~--~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L 248 (347)
T 4fmz_A 176 LTDLYSLSLNYN-QIEDISP-LASLTSLHYFTAYVN-QITDITPVANM--TRLNSLKIGNNK-ITDLSP-LANLSQLTWL 248 (347)
T ss_dssp CTTCSEEECTTS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCGGGGGC--TTCCEEECCSSC-CCCCGG-GTTCTTCCEE
T ss_pred CCCCCEEEccCC-ccccccc-ccCCCccceeecccC-CCCCCchhhcC--CcCCEEEccCCc-cCCCcc-hhcCCCCCEE
Confidence 555555555554 2344433 445555555555553 2332221 222 366777776643 444443 6666777777
Q ss_pred eeccCcCccccCCCCCCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCc
Q 037573 255 TVEQCPGIVAIPENDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQ 333 (357)
Q Consensus 255 ~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~ 333 (357)
++++| .+..++....+++|+.|++++ +.++.++ .+..+++|++|++++ |.--...+..+..+++|++|++++++
T Consensus 249 ~l~~n-~l~~~~~~~~l~~L~~L~l~~-n~l~~~~--~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 249 EIGTN-QISDINAVKDLTKLKMLNVGS-NQISDIS--VLNNLSQLNSLFLNN-NQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp ECCSS-CCCCCGGGTTCTTCCEEECCS-SCCCCCG--GGGGCTTCSEEECCS-SCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred ECCCC-ccCCChhHhcCCCcCEEEccC-CccCCCh--hhcCCCCCCEEECcC-CcCCCcChhHhhccccCCEEEccCCc
Confidence 77664 455444334456777777776 3455443 246667777777776 43222223333356677777777664
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.74 E-value=1.5e-17 Score=164.66 Aligned_cols=266 Identities=14% Similarity=0.022 Sum_probs=184.6
Q ss_pred CCcccceEEeeccCCCCCCCCccccccchhHHHhhhcccccccchhhhhhhccCCccccccccccccCCcccccCCCccc
Q 037573 47 PSTSKAWKLIIRTCCSNFNTPSLMFNASMRYKLKDSTTRLQEIDMEKEQLILKSNSGERSKKVGQRLSTTSVIQVLCRLK 126 (357)
Q Consensus 47 ~~~~~l~~l~l~~c~~~~~~~~l~~l~~L~~l~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 126 (357)
...++++.+.+.++.. ..+|.+..+++|+.+.+.++.- ..++.. ..-.++....... .......++.+++|+
T Consensus 282 ~~l~~L~~L~l~~~~~-~~l~~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n-----~~~~~~~~~~l~~L~ 353 (606)
T 3vq2_A 282 HCLANVSAMSLAGVSI-KYLEDVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMN-----KGSISFKKVALPSLS 353 (606)
T ss_dssp GGGTTCSEEEEESCCC-CCCCCCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESC-----SSCEECCCCCCTTCC
T ss_pred ccCCCCCEEEecCccc-hhhhhccccccCCEEEcccccC-cccccC-CCCccceeeccCC-----cCccchhhccCCCCC
Confidence 3456788888888764 3344677777787777776543 444421 0001111111111 011122466789999
Q ss_pred EEeeccCcCcccc---ccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccc-cccCCCCC
Q 037573 127 YLELIDCECLVNL---PQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLP-HELHKLSR 202 (357)
Q Consensus 127 ~L~l~~~~~l~~l---p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~ 202 (357)
+|+++++. +..+ |..+..+++|++|+++++. +..+|..+.. +++|+.|++++|......| ..+..+++
T Consensus 354 ~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~------l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 425 (606)
T 3vq2_A 354 YLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMG------LEELQHLDFQHSTLKRVTEFSAFLSLEK 425 (606)
T ss_dssp EEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTT------CTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred EEECcCCc-cCCCcchhhhhccCCcccEeECCCCc-cccchhhccC------CCCCCeeECCCCccCCccChhhhhcccc
Confidence 99999875 3443 6678889999999999864 6667755556 8999999999875333334 46788999
Q ss_pred ccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchh-hHhhhccCCcccceeeccCcCccccCCC--CCCCCcceEEe
Q 037573 203 LQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEA-LLNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKI 279 (357)
Q Consensus 203 L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l 279 (357)
|+.|++++|......|.....+++|++|++++|..... +|..+..+++|++|++++| .++.++.. +.+++|++|++
T Consensus 426 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L 504 (606)
T 3vq2_A 426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNM 504 (606)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEEC
Confidence 99999998754444444222334999999998764332 6778899999999999996 56555443 34789999999
Q ss_pred cCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCC-CcceEecccC
Q 037573 280 TDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGST-SLTRLWIRDF 332 (357)
Q Consensus 280 ~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~-sL~~L~l~~c 332 (357)
++ +.++.+.+..+..+++|++|++++ +.+..+|..+...+ +|++|++++.
T Consensus 505 s~-N~l~~~~~~~~~~l~~L~~L~l~~--N~l~~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 505 SH-NNLLFLDSSHYNQLYSLSTLDCSF--NRIETSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp CS-SCCSCEEGGGTTTCTTCCEEECTT--SCCCCEESCGGGSCTTCCEEECCSC
T ss_pred CC-CcCCCcCHHHccCCCcCCEEECCC--CcCcccCHhHhhhcccCcEEEccCC
Confidence 99 567766556688999999999998 57889988765554 6999999864
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.74 E-value=1.9e-17 Score=158.24 Aligned_cols=278 Identities=15% Similarity=0.102 Sum_probs=159.8
Q ss_pred CCcccceEEeeccCCCCCC--CCccccccchhHHHhhhccccccc-chhhhhh-hccCCccccccccccccCCcccccCC
Q 037573 47 PSTSKAWKLIIRTCCSNFN--TPSLMFNASMRYKLKDSTTRLQEI-DMEKEQL-ILKSNSGERSKKVGQRLSTTSVIQVL 122 (357)
Q Consensus 47 ~~~~~l~~l~l~~c~~~~~--~~~l~~l~~L~~l~~~~~~~l~~i-~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (357)
..+++++.|++++|..... ...+..+++|+.+.+.++. +..+ +..+..+ .++......+... ...+....++.+
T Consensus 51 ~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~l 128 (455)
T 3v47_A 51 SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAFNGLANLEVLTLTQCNLD-GAVLSGNFFKPL 128 (455)
T ss_dssp SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTTTTCTTCCEEECTTSCCB-THHHHSSTTTTC
T ss_pred ccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhhccCcccCCEEeCCCCCCC-ccccCcccccCc
Confidence 4567899999998864322 3357788888888887754 3333 3333222 1221111111100 001112237788
Q ss_pred CcccEEeeccCcCccccccc-cCCCCCcCEEeecCCCcchhc-ccccccc-----cccc---------------------
Q 037573 123 CRLKYLELIDCECLVNLPQA-LHCLSSLTEITVAGCTKLVSF-LELSSVA-----EMFA--------------------- 174 (357)
Q Consensus 123 ~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~i~~c~~l~~~-~~~~~~L-----~~L~--------------------- 174 (357)
++|++|+++++......|.. ++.+++|++|+++++. +..+ +..+..+ +.|.
T Consensus 129 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 207 (455)
T 3v47_A 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207 (455)
T ss_dssp TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCC
T ss_pred ccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhccccccccccccccCcccccchhhcccccccc
Confidence 99999999988643334554 7789999999998854 3333 2222211 1111
Q ss_pred --ccccccEEEeeCCCCCcccccccCC---------------------------------------CCCccEEEecCCCC
Q 037573 175 --IITSFENIMVNGCDNLKCLPHELHK---------------------------------------LSRLQQIEIRNCPS 213 (357)
Q Consensus 175 --~l~~L~~L~l~~c~~l~~lp~~l~~---------------------------------------l~~L~~L~l~~c~~ 213 (357)
.+++|+.|++++|......|..+.. .++|+.|+++++.-
T Consensus 208 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 287 (455)
T 3v47_A 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI 287 (455)
T ss_dssp TTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCC
T ss_pred ccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccc
Confidence 1356777777776432222222211 24566666666432
Q ss_pred CcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--CCCCCcceEEecCCCCceecccc
Q 037573 214 LVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKITDVNIFKSLFQW 291 (357)
Q Consensus 214 l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~~~~~~ 291 (357)
....+.....+++|++|+++++.--...|..+..+++|++|+++++ .+..++.. +.+++|++|++++ +.++.+.+.
T Consensus 288 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~ 365 (455)
T 3v47_A 288 FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSY-NHIRALGDQ 365 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCS-SCCCEECTT
T ss_pred cccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCC-CcccccChh
Confidence 2222322222347778877775533333456777778888888774 45555332 3367788888887 556666555
Q ss_pred cccccCCccEEEEeccCCCCCcCCCCC-CCCCCcceEeccc
Q 037573 292 GLHRLNSLKELIVNGEFPDMISFPQEE-IGSTSLTRLWIRD 331 (357)
Q Consensus 292 ~l~~l~~L~~L~l~~~c~~l~~l~~~~-~~~~sL~~L~l~~ 331 (357)
.+..+++|++|++++ +.+..+|... ..+++|++|++++
T Consensus 366 ~~~~l~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~L~l~~ 404 (455)
T 3v47_A 366 SFLGLPNLKELALDT--NQLKSVPDGIFDRLTSLQKIWLHT 404 (455)
T ss_dssp TTTTCTTCCEEECCS--SCCSCCCTTTTTTCTTCCEEECCS
T ss_pred hccccccccEEECCC--CccccCCHhHhccCCcccEEEccC
Confidence 577788888888887 5677776544 3567888888774
No 14
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.74 E-value=2.3e-16 Score=144.45 Aligned_cols=196 Identities=13% Similarity=0.180 Sum_probs=118.7
Q ss_pred ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhcccc-ccccccccccccccEEEeeCCCCC--ccccc
Q 037573 119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLEL-SSVAEMFAIITSFENIMVNGCDNL--KCLPH 195 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~-~~~L~~L~~l~~L~~L~l~~c~~l--~~lp~ 195 (357)
++.+++|++|+++++. ++.+|..+. ++|++|+++++ .+..++.. +.. +++|+.|+++++..- ...+.
T Consensus 96 ~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~------l~~L~~L~l~~n~l~~~~~~~~ 165 (330)
T 1xku_A 96 FAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHEN-EITKVRKSVFNG------LNQMIVVELGTNPLKSSGIENG 165 (330)
T ss_dssp TTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTT------CTTCCEEECCSSCCCGGGBCTT
T ss_pred hcCCCCCCEEECCCCc-CCccChhhc--ccccEEECCCC-cccccCHhHhcC------CccccEEECCCCcCCccCcChh
Confidence 4445555555555543 344444332 45555555553 23333321 123 677777877775421 13355
Q ss_pred ccCCCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhh-HhhhccCCcccceeeccCcCccccCCC--CCCC
Q 037573 196 ELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEAL-LNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPT 272 (357)
Q Consensus 196 ~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~ 272 (357)
.+..+++|+.|+++++ .+..+|....+ +|++|+++++. ++.+ |..+..+++|++|+++++ .+..++.. ..++
T Consensus 166 ~~~~l~~L~~L~l~~n-~l~~l~~~~~~--~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~ 240 (330)
T 1xku_A 166 AFQGMKKLSYIRIADT-NITTIPQGLPP--SLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTP 240 (330)
T ss_dssp GGGGCTTCCEEECCSS-CCCSCCSSCCT--TCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGST
T ss_pred hccCCCCcCEEECCCC-ccccCCccccc--cCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCC-cCceeChhhccCCC
Confidence 6667778888888764 56666665444 78888887755 4444 556777888888888774 56555543 2367
Q ss_pred CcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCC-------CCCCcceEecccCc
Q 037573 273 NLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEI-------GSTSLTRLWIRDFQ 333 (357)
Q Consensus 273 ~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~-------~~~sL~~L~l~~c~ 333 (357)
+|++|++++ +.++.++.+ +..+++|++|++++ +.+..++...+ ..++|+.|++.+-|
T Consensus 241 ~L~~L~L~~-N~l~~lp~~-l~~l~~L~~L~l~~--N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 241 HLRELHLNN-NKLVKVPGG-LADHKYIQVVYLHN--NNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp TCCEEECCS-SCCSSCCTT-TTTCSSCCEEECCS--SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred CCCEEECCC-CcCccCChh-hccCCCcCEEECCC--CcCCccChhhcCCcccccccccccceEeecCc
Confidence 888888887 566666554 67778888888887 56777765442 13566666666543
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.73 E-value=8.8e-18 Score=167.38 Aligned_cols=269 Identities=9% Similarity=0.032 Sum_probs=198.1
Q ss_pred CCcccceEEeeccCCCCC------------------CCCccc--cccchhHHHhhhcccccccchhhhhh-hccCCcccc
Q 037573 47 PSTSKAWKLIIRTCCSNF------------------NTPSLM--FNASMRYKLKDSTTRLQEIDMEKEQL-ILKSNSGER 105 (357)
Q Consensus 47 ~~~~~l~~l~l~~c~~~~------------------~~~~l~--~l~~L~~l~~~~~~~l~~i~~~~~~l-~~~~~~~~~ 105 (357)
...++++.|+++++.... .++.++ .+++|+.+.+.++.-...++..+..+ .++......
T Consensus 203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282 (636)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT
T ss_pred hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC
Confidence 356789999999998544 455677 89999999998877666666555433 222222111
Q ss_pred cc-ccccccCCcccccCC------CcccEEeeccCcCcccccc--ccCCCCCcCEEeecCCCcch-hccccccccccccc
Q 037573 106 SK-KVGQRLSTTSVIQVL------CRLKYLELIDCECLVNLPQ--ALHCLSSLTEITVAGCTKLV-SFLELSSVAEMFAI 175 (357)
Q Consensus 106 ~~-~~~~~~~~~~~~~~l------~~L~~L~l~~~~~l~~lp~--~~~~l~~L~~L~i~~c~~l~-~~~~~~~~L~~L~~ 175 (357)
.. .... ..|..++.+ ++|++|+++++. +..+|. .++.+++|++|+++++. +. .+| .+..
T Consensus 283 n~~l~~~--~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip-~~~~------ 351 (636)
T 4eco_A 283 NRGISGE--QLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQ-LEGKLP-AFGS------ 351 (636)
T ss_dssp CTTSCHH--HHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCC-CEEECC-CCEE------
T ss_pred CCCCccc--cchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCc-Cccchh-hhCC------
Confidence 11 0000 113334444 899999999986 458888 89999999999999864 44 777 5445
Q ss_pred cccccEEEeeCCCCCcccccccCCCCC-ccEEEecCCCCCcccCCCCC--CCCCcceEEeccCCcchhhHhhhc------
Q 037573 176 ITSFENIMVNGCDNLKCLPHELHKLSR-LQQIEIRNCPSLVSFPERGL--PSTNLTAVCVINCEKLEALLNGIH------ 246 (357)
Q Consensus 176 l~~L~~L~l~~c~~l~~lp~~l~~l~~-L~~L~l~~c~~l~~l~~~~~--~~~~L~~L~l~~c~~l~~l~~~~~------ 246 (357)
+++|+.|+++++ .+..+|..+..+++ |+.|+++++ .+..+|.... ..++|++|+++++.-...+|..+.
T Consensus 352 l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 352 EIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429 (636)
T ss_dssp EEEESEEECCSS-EEEECCTTSEEECTTCCEEECCSS-CCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred CCCCCEEECCCC-ccccccHhhhhhcccCcEEEccCC-cCcccchhhhhcccCccCEEECcCCcCCCcchhhhccccccc
Confidence 889999999996 46689999999999 999999986 4667876322 223899999999776556666676
Q ss_pred -cCCcccceeeccCcCccccCCCC--CCCCcceEEecCCCCceeccccccccc-------CCccEEEEeccCCCCCcCCC
Q 037573 247 -RLTSHQQLTVEQCPGIVAIPEND--YPTNLTILKITDVNIFKSLFQWGLHRL-------NSLKELIVNGEFPDMISFPQ 316 (357)
Q Consensus 247 -~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~c~~l~~~~~~~l~~l-------~~L~~L~l~~~c~~l~~l~~ 316 (357)
.+++|++|+++++ .+..+|... .+++|+.|++++ +.++.++...+... ++|++|++++ +.+..+|.
T Consensus 430 ~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~--N~l~~lp~ 505 (636)
T 4eco_A 430 FKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMG-NMLTEIPKNSLKDENENFKNTYLLTSIDLRF--NKLTKLSD 505 (636)
T ss_dssp CCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCS-SCCSBCCSSSSEETTEECTTGGGCCEEECCS--SCCCBCCG
T ss_pred ccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCC-CCCCCcCHHHhccccccccccCCccEEECcC--CcCCccCh
Confidence 7789999999995 677777652 368999999999 66777766544333 3999999998 67889998
Q ss_pred CCC--CCCCcceEecccC
Q 037573 317 EEI--GSTSLTRLWIRDF 332 (357)
Q Consensus 317 ~~~--~~~sL~~L~l~~c 332 (357)
.+. .+++|++|+++++
T Consensus 506 ~~~~~~l~~L~~L~Ls~N 523 (636)
T 4eco_A 506 DFRATTLPYLVGIDLSYN 523 (636)
T ss_dssp GGSTTTCTTCCEEECCSS
T ss_pred hhhhccCCCcCEEECCCC
Confidence 876 7899999999864
No 16
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.72 E-value=3.1e-17 Score=153.81 Aligned_cols=262 Identities=14% Similarity=0.090 Sum_probs=132.1
Q ss_pred CCcccceEEeeccCCCCCCCCc-cccccchhHHHhhhcccccccch-hhhhh-hccCCccccccccccccCCcccccCCC
Q 037573 47 PSTSKAWKLIIRTCCSNFNTPS-LMFNASMRYKLKDSTTRLQEIDM-EKEQL-ILKSNSGERSKKVGQRLSTTSVIQVLC 123 (357)
Q Consensus 47 ~~~~~l~~l~l~~c~~~~~~~~-l~~l~~L~~l~~~~~~~l~~i~~-~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (357)
...++++.+.+.++......+. +..+++|+.+.+.++. +..+.. .+..+ .+......... ... ..+..++.++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~--l~~-~~~~~~~~l~ 117 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNA--IRY-LPPHVFQNVP 117 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC--CCC-CCTTTTTTCT
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCC--CCc-CCHHHhcCCC
Confidence 3456788888887653222222 4566677776666543 333322 11111 01111100000 000 0122345566
Q ss_pred cccEEeeccCcCccccccc-cCCCCCcCEEeecCCCcchhcccc-ccccccccccccccEEEeeCCCCCcccccccCCCC
Q 037573 124 RLKYLELIDCECLVNLPQA-LHCLSSLTEITVAGCTKLVSFLEL-SSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLS 201 (357)
Q Consensus 124 ~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~i~~c~~l~~~~~~-~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~ 201 (357)
+|++|+++++. +..+|.. ++.+++|++|+++++ .+..++.. +.. +++|+.|+++++. +..++ +..++
T Consensus 118 ~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~------l~~L~~L~l~~n~-l~~~~--~~~l~ 186 (390)
T 3o6n_A 118 LLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQA------TTSLQNLQLSSNR-LTHVD--LSLIP 186 (390)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSS------CTTCCEEECCSSC-CSBCC--GGGCT
T ss_pred CCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccC------CCCCCEEECCCCc-CCccc--ccccc
Confidence 66666666653 4455543 355666666666654 33333322 223 5666666666643 33332 23334
Q ss_pred CccEEEecCC------------------CCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCcc
Q 037573 202 RLQQIEIRNC------------------PSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIV 263 (357)
Q Consensus 202 ~L~~L~l~~c------------------~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~ 263 (357)
+|+.|+++++ ..+..++....+ +|++|+++++. ++.. ..+..+++|++|+++++ .+.
T Consensus 187 ~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~Ls~n-~l~ 261 (390)
T 3o6n_A 187 SLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV--ELTILKLQHNN-LTDT-AWLLNYPGLVEVDLSYN-ELE 261 (390)
T ss_dssp TCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCS--SCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSS-CCC
T ss_pred ccceeecccccccccCCCCcceEEECCCCeeeeccccccc--cccEEECCCCC-Cccc-HHHcCCCCccEEECCCC-cCC
Confidence 4444443332 122222222222 56666665543 3333 35666777777777774 444
Q ss_pred ccCCC--CCCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccC
Q 037573 264 AIPEN--DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDF 332 (357)
Q Consensus 264 ~l~~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c 332 (357)
.++.. ..+++|++|++++ +.++.++.. ...+++|++|++++ +.+..+|.....+++|++|+++++
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~-~~~l~~L~~L~L~~--n~l~~~~~~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 262 KIMYHPFVKMQRLERLYISN-NRLVALNLY-GQPIPTLKVLDLSH--NHLLHVERNQPQFDRLENLYLDHN 328 (390)
T ss_dssp EEESGGGTTCSSCCEEECCS-SCCCEEECS-SSCCTTCCEEECCS--SCCCCCGGGHHHHTTCSEEECCSS
T ss_pred CcChhHccccccCCEEECCC-CcCcccCcc-cCCCCCCCEEECCC--CcceecCccccccCcCCEEECCCC
Confidence 44222 3356777777777 556655443 45677777777776 466666655545667777777654
No 17
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.72 E-value=1.6e-16 Score=146.36 Aligned_cols=254 Identities=15% Similarity=0.201 Sum_probs=176.9
Q ss_pred CcccceEEeeccCCCCCCCCccccccchhHHHhhhcccccccchhhhhh-hccCCccccccccccccCCcccccCCCccc
Q 037573 48 STSKAWKLIIRTCCSNFNTPSLMFNASMRYKLKDSTTRLQEIDMEKEQL-ILKSNSGERSKKVGQRLSTTSVIQVLCRLK 126 (357)
Q Consensus 48 ~~~~l~~l~l~~c~~~~~~~~l~~l~~L~~l~~~~~~~l~~i~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 126 (357)
.+++++++.+.++.. ..++.+..+++|+.+.+.++ .+..+.. +..+ .++......+ .+...+.+..+++|+
T Consensus 42 ~l~~L~~L~l~~~~i-~~~~~~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n-----~i~~~~~~~~l~~L~ 113 (347)
T 4fmz_A 42 ELESITKLVVAGEKV-ASIQGIEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTN-----KITDISALQNLTNLR 113 (347)
T ss_dssp HHTTCSEEECCSSCC-CCCTTGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-----CCCCCGGGTTCTTCS
T ss_pred hcccccEEEEeCCcc-ccchhhhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCC-----cccCchHHcCCCcCC
Confidence 456788888888764 33466778888888877765 3444443 2111 1221111111 122234577888899
Q ss_pred EEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCCccEE
Q 037573 127 YLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQI 206 (357)
Q Consensus 127 ~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L 206 (357)
+|+++++. +..++. +..+++|++|++++|..+..++. ... +++|+.|++++|. +..++. +..+++|+.|
T Consensus 114 ~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~------l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L 182 (347)
T 4fmz_A 114 ELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSP-LSN------MTGLNYLTVTESK-VKDVTP-IANLTDLYSL 182 (347)
T ss_dssp EEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTT------CTTCCEEECCSSC-CCCCGG-GGGCTTCSEE
T ss_pred EEECcCCc-ccCchh-hccCCceeEEECCCCCCcccccc-hhh------CCCCcEEEecCCC-cCCchh-hccCCCCCEE
Confidence 99998875 566665 77888899999988876665554 223 8889999998864 555554 7788999999
Q ss_pred EecCCCCCcccCC-CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEEecCCCCc
Q 037573 207 EIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIF 285 (357)
Q Consensus 207 ~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l 285 (357)
++++| .+..++. ..+ ++|+.|+++++. +..++. +..+++|++|++++| .+..++....+++|++|++++ +.+
T Consensus 183 ~l~~n-~l~~~~~~~~l--~~L~~L~l~~n~-l~~~~~-~~~~~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~-n~l 255 (347)
T 4fmz_A 183 SLNYN-QIEDISPLASL--TSLHYFTAYVNQ-ITDITP-VANMTRLNSLKIGNN-KITDLSPLANLSQLTWLEIGT-NQI 255 (347)
T ss_dssp ECTTS-CCCCCGGGGGC--TTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCS-SCC
T ss_pred EccCC-cccccccccCC--CccceeecccCC-CCCCch-hhcCCcCCEEEccCC-ccCCCcchhcCCCCCEEECCC-Ccc
Confidence 99886 4555543 333 489999998854 555543 788999999999986 566665545578999999999 567
Q ss_pred eecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccC
Q 037573 286 KSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDF 332 (357)
Q Consensus 286 ~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c 332 (357)
+.++ .+..+++|++|++++ | .+..++. +..+++|++|++++|
T Consensus 256 ~~~~--~~~~l~~L~~L~l~~-n-~l~~~~~-~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 256 SDIN--AVKDLTKLKMLNVGS-N-QISDISV-LNNLSQLNSLFLNNN 297 (347)
T ss_dssp CCCG--GGTTCTTCCEEECCS-S-CCCCCGG-GGGCTTCSEEECCSS
T ss_pred CCCh--hHhcCCCcCEEEccC-C-ccCCChh-hcCCCCCCEEECcCC
Confidence 7653 367899999999998 4 7777753 446889999999876
No 18
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=1.4e-16 Score=139.04 Aligned_cols=199 Identities=18% Similarity=0.231 Sum_probs=157.5
Q ss_pred CcccEEeeccCcCcccccc-ccCCCCCcCEEeecCCCcchhccccc-cccccccccccccEEEeeCCCCCccccc-ccCC
Q 037573 123 CRLKYLELIDCECLVNLPQ-ALHCLSSLTEITVAGCTKLVSFLELS-SVAEMFAIITSFENIMVNGCDNLKCLPH-ELHK 199 (357)
Q Consensus 123 ~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~-~~L~~L~~l~~L~~L~l~~c~~l~~lp~-~l~~ 199 (357)
++|++|+++++. ++.+|. .++.+++|++|+++++..+..++... .. +++|+.|++++|+.+..+|. .+..
T Consensus 31 ~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~------l~~L~~L~l~~~n~l~~i~~~~f~~ 103 (239)
T 2xwt_C 31 PSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYN------LSKVTHIEIRNTRNLTYIDPDALKE 103 (239)
T ss_dssp TTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEES------CTTCCEEEEEEETTCCEECTTSEEC
T ss_pred CcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCC------CcCCcEEECCCCCCeeEcCHHHhCC
Confidence 489999999976 667665 68899999999999975577777643 35 88999999998667888874 5778
Q ss_pred CCCccEEEecCCCCCcccCCCCCCCCCcc---eEEeccCCcchhhHh-hhccCCccc-ceeeccCcCccccCCCCC-CCC
Q 037573 200 LSRLQQIEIRNCPSLVSFPERGLPSTNLT---AVCVINCEKLEALLN-GIHRLTSHQ-QLTVEQCPGIVAIPENDY-PTN 273 (357)
Q Consensus 200 l~~L~~L~l~~c~~l~~l~~~~~~~~~L~---~L~l~~c~~l~~l~~-~~~~l~~L~-~L~l~~c~~l~~l~~~~~-~~~ 273 (357)
+++|+.|+++++ .++.+|. ...+++|+ +|+++++..++.+|. .+..+++|+ +|++++ +.++.+|...+ .++
T Consensus 104 l~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~~~~~ 180 (239)
T 2xwt_C 104 LPLLKFLGIFNT-GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAFNGTK 180 (239)
T ss_dssp CTTCCEEEEEEE-CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCCCEECTTTTTTCE
T ss_pred CCCCCEEeCCCC-CCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC-CCCcccCHhhcCCCC
Confidence 999999999985 5666775 22233777 999999757787765 478899999 999988 46778877532 469
Q ss_pred cceEEecCCCCceeccccccccc-CCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCccc
Q 037573 274 LTILKITDVNIFKSLFQWGLHRL-NSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNL 335 (357)
Q Consensus 274 L~~L~l~~c~~l~~~~~~~l~~l-~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~~L 335 (357)
|+.|+++++..++.+++..+..+ ++|++|++++ +.+..+|.. .+++|++|++.++..|
T Consensus 181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~--N~l~~l~~~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ--TSVTALPSK--GLEHLKELIARNTWTL 239 (239)
T ss_dssp EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT--CCCCCCCCT--TCTTCSEEECTTC---
T ss_pred CCEEEcCCCCCcccCCHHHhhccccCCcEEECCC--CccccCChh--HhccCceeeccCccCC
Confidence 99999999546888877778888 9999999998 788898875 4779999999887654
No 19
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.71 E-value=2e-17 Score=150.60 Aligned_cols=205 Identities=13% Similarity=0.059 Sum_probs=159.4
Q ss_pred cccccCCCcccEEeecc-CcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccc
Q 037573 116 TSVIQVLCRLKYLELID-CECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLP 194 (357)
Q Consensus 116 ~~~~~~l~~L~~L~l~~-~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp 194 (357)
+..++.+++|++|++++ +...+.+|..++.+++|++|+++++.-...+|..+.. +++|++|+++++.....+|
T Consensus 69 ~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~------l~~L~~L~Ls~N~l~~~~p 142 (313)
T 1ogq_A 69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ------IKTLVTLDFSYNALSGTLP 142 (313)
T ss_dssp CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG------CTTCCEEECCSSEEESCCC
T ss_pred ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC------CCCCCEEeCCCCccCCcCC
Confidence 45578899999999996 5544568888999999999999986433467766666 8999999999975444788
Q ss_pred cccCCCCCccEEEecCCCCCcccCCCCCCCC-CcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--CCC
Q 037573 195 HELHKLSRLQQIEIRNCPSLVSFPERGLPST-NLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN--DYP 271 (357)
Q Consensus 195 ~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~-~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~ 271 (357)
..+..+++|++|+++++.-...+|.....++ +|++|+++++.-...+|..+..++ |++|+++++ .+...+.. ..+
T Consensus 143 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N-~l~~~~~~~~~~l 220 (313)
T 1ogq_A 143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN-MLEGDASVLFGSD 220 (313)
T ss_dssp GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS-EEEECCGGGCCTT
T ss_pred hHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC-cccCcCCHHHhcC
Confidence 8999999999999998643336665333333 899999998765457788888887 999999995 45433322 347
Q ss_pred CCcceEEecCCCCceecccccccccCCccEEEEeccCCCCC-cCCCCCCCCCCcceEecccC
Q 037573 272 TNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMI-SFPQEEIGSTSLTRLWIRDF 332 (357)
Q Consensus 272 ~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~-~l~~~~~~~~sL~~L~l~~c 332 (357)
++|+.|++++ +.++...+. +..+++|++|++++ | .+. .+|..+..+++|++|+++++
T Consensus 221 ~~L~~L~L~~-N~l~~~~~~-~~~l~~L~~L~Ls~-N-~l~~~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 221 KNTQKIHLAK-NSLAFDLGK-VGLSKNLNGLDLRN-N-RIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp SCCSEEECCS-SEECCBGGG-CCCCTTCCEEECCS-S-CCEECCCGGGGGCTTCCEEECCSS
T ss_pred CCCCEEECCC-CceeeecCc-ccccCCCCEEECcC-C-cccCcCChHHhcCcCCCEEECcCC
Confidence 8999999999 566644443 67889999999998 4 555 78887778899999999875
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=4.5e-17 Score=166.34 Aligned_cols=269 Identities=9% Similarity=0.036 Sum_probs=184.4
Q ss_pred CCcccceEEeeccCCCCC------------------CCCccc--cccchhHHHhhhcccccccchhhhhh-hccCCcccc
Q 037573 47 PSTSKAWKLIIRTCCSNF------------------NTPSLM--FNASMRYKLKDSTTRLQEIDMEKEQL-ILKSNSGER 105 (357)
Q Consensus 47 ~~~~~l~~l~l~~c~~~~------------------~~~~l~--~l~~L~~l~~~~~~~l~~i~~~~~~l-~~~~~~~~~ 105 (357)
..+++++.|+++++.... .++.++ .+++|+.+.+.++.-...++..+..+ .+..+....
T Consensus 445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524 (876)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT
T ss_pred hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC
Confidence 355789999999988444 444556 88999999888877666666655443 222222111
Q ss_pred cc-ccccccCCcc-------cccCCCcccEEeeccCcCcccccc--ccCCCCCcCEEeecCCCcchhccccccccccccc
Q 037573 106 SK-KVGQRLSTTS-------VIQVLCRLKYLELIDCECLVNLPQ--ALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAI 175 (357)
Q Consensus 106 ~~-~~~~~~~~~~-------~~~~l~~L~~L~l~~~~~l~~lp~--~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~ 175 (357)
.. .....+ |. .+..+++|+.|+++++. +..+|. .++.+++|+.|+++++ .+..+| .+..
T Consensus 525 N~~lsg~~i--P~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~~~~------ 593 (876)
T 4ecn_A 525 NRGISAAQL--KADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHN-KVRHLE-AFGT------ 593 (876)
T ss_dssp CTTSCHHHH--HHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTS-CCCBCC-CCCT------
T ss_pred CCCcccccc--hHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCC-Ccccch-hhcC------
Confidence 11 000001 22 23345689999998876 458888 7888999999999885 455777 4445
Q ss_pred cccccEEEeeCCCCCcccccccCCCCC-ccEEEecCCCCCcccCCCC--CCCCCcceEEeccCCcchhhH---hhhc--c
Q 037573 176 ITSFENIMVNGCDNLKCLPHELHKLSR-LQQIEIRNCPSLVSFPERG--LPSTNLTAVCVINCEKLEALL---NGIH--R 247 (357)
Q Consensus 176 l~~L~~L~l~~c~~l~~lp~~l~~l~~-L~~L~l~~c~~l~~l~~~~--~~~~~L~~L~l~~c~~l~~l~---~~~~--~ 247 (357)
+++|+.|++++|. +..+|..+..+++ |+.|+++++ .+..+|... .+.++|+.|++++|.....+| ..+. .
T Consensus 594 L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N-~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~ 671 (876)
T 4ecn_A 594 NVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671 (876)
T ss_dssp TSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSS-CCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCC
T ss_pred CCcceEEECcCCc-cccchHHHhhccccCCEEECcCC-CCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhcccc
Confidence 8889999998864 5588888888888 999999986 466777522 222358999998865433222 2222 3
Q ss_pred CCcccceeeccCcCccccCCCC--CCCCcceEEecCCCCceeccccccc-------ccCCccEEEEeccCCCCCcCCCCC
Q 037573 248 LTSHQQLTVEQCPGIVAIPEND--YPTNLTILKITDVNIFKSLFQWGLH-------RLNSLKELIVNGEFPDMISFPQEE 318 (357)
Q Consensus 248 l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~c~~l~~~~~~~l~-------~l~~L~~L~l~~~c~~l~~l~~~~ 318 (357)
+++|++|++++| .+..+|... .+++|+.|++++ +.++.++...+. .+++|++|++++ +.+..+|..+
T Consensus 672 ~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~-N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~--N~L~~lp~~l 747 (876)
T 4ecn_A 672 GINASTVTLSYN-EIQKFPTELFATGSPISTIILSN-NLMTSIPENSLKPKDGNYKNTYLLTTIDLRF--NKLTSLSDDF 747 (876)
T ss_dssp CCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCS-CCCSCCCTTSSSCTTSCCTTGGGCCEEECCS--SCCCCCCGGG
T ss_pred CCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCC-CcCCccChHHhccccccccccCCccEEECCC--CCCccchHHh
Confidence 458999999885 566776542 367899999998 567777665333 233899999998 5788888877
Q ss_pred C--CCCCcceEecccC
Q 037573 319 I--GSTSLTRLWIRDF 332 (357)
Q Consensus 319 ~--~~~sL~~L~l~~c 332 (357)
. .+++|+.|+++++
T Consensus 748 ~~~~l~~L~~L~Ls~N 763 (876)
T 4ecn_A 748 RATTLPYLSNMDVSYN 763 (876)
T ss_dssp STTTCTTCCEEECCSS
T ss_pred hhccCCCcCEEEeCCC
Confidence 6 7889999999875
No 21
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.71 E-value=3.1e-16 Score=146.95 Aligned_cols=267 Identities=11% Similarity=0.094 Sum_probs=178.1
Q ss_pred CcccceEEeeccCCCCCCC-CccccccchhHHHhhhcccccccchh-hhhh-hccCCccccccccccccCCcccccCCCc
Q 037573 48 STSKAWKLIIRTCCSNFNT-PSLMFNASMRYKLKDSTTRLQEIDME-KEQL-ILKSNSGERSKKVGQRLSTTSVIQVLCR 124 (357)
Q Consensus 48 ~~~~l~~l~l~~c~~~~~~-~~l~~l~~L~~l~~~~~~~l~~i~~~-~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 124 (357)
.+++++.|+++++...... ..+..+++|+.+.+.++. +..+... +..+ .++........ ...++ ...++.+++
T Consensus 67 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~--l~~l~-~~~~~~l~~ 142 (390)
T 3o6n_A 67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERND--LSSLP-RGIFHNTPK 142 (390)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC--CCCCC-TTTTTTCTT
T ss_pred ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCEEECCCCc--cCcCC-HHHhcCCCC
Confidence 3468889988887643332 357778888888777654 4444322 2222 12211111111 11111 122577899
Q ss_pred ccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccc-cccccc----------cccccccEEEeeCCCCCccc
Q 037573 125 LKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELS-SVAEMF----------AIITSFENIMVNGCDNLKCL 193 (357)
Q Consensus 125 L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~-~~L~~L----------~~l~~L~~L~l~~c~~l~~l 193 (357)
|++|+++++......|..++.+++|++|+++++ .+..++... .+|+.| ...++|+.|+++++ .+..+
T Consensus 143 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n-~l~~~ 220 (390)
T 3o6n_A 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN-SINVV 220 (390)
T ss_dssp CCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSS-CCCEE
T ss_pred CcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccccccccccceeecccccccccCCCCcceEEECCCC-eeeec
Confidence 999999988643334556888999999999985 454443221 122222 22567788888775 45666
Q ss_pred ccccCCCCCccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC-CCC
Q 037573 194 PHELHKLSRLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN-DYP 271 (357)
Q Consensus 194 p~~l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~ 271 (357)
|... .++|+.|+++++ .+...+. ..++ +|++|+++++.--...|..+..+++|++|+++++ .++.++.. ..+
T Consensus 221 ~~~~--~~~L~~L~l~~n-~l~~~~~l~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l 294 (390)
T 3o6n_A 221 RGPV--NVELTILKLQHN-NLTDTAWLLNYP--GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPI 294 (390)
T ss_dssp ECCC--CSSCCEEECCSS-CCCCCGGGGGCT--TCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCC
T ss_pred cccc--cccccEEECCCC-CCcccHHHcCCC--CccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCC
Confidence 5433 579999999986 4554432 3344 9999999997643444678899999999999995 67777765 347
Q ss_pred CCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccC
Q 037573 272 TNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDF 332 (357)
Q Consensus 272 ~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c 332 (357)
++|++|++++ +.++.++.. +..+++|++|++++ +.+..++ ...+++|++|++++.
T Consensus 295 ~~L~~L~L~~-n~l~~~~~~-~~~l~~L~~L~L~~--N~i~~~~--~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 295 PTLKVLDLSH-NHLLHVERN-QPQFDRLENLYLDH--NSIVTLK--LSTHHTLKNLTLSHN 349 (390)
T ss_dssp TTCCEEECCS-SCCCCCGGG-HHHHTTCSEEECCS--SCCCCCC--CCTTCCCSEEECCSS
T ss_pred CCCCEEECCC-CcceecCcc-ccccCcCCEEECCC--CccceeC--chhhccCCEEEcCCC
Confidence 8999999999 578777654 78899999999998 5677776 346789999999873
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.71 E-value=2.4e-16 Score=155.96 Aligned_cols=202 Identities=13% Similarity=0.051 Sum_probs=92.0
Q ss_pred ccCCCcccEEeeccCcCcccc--ccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccccc-
Q 037573 119 IQVLCRLKYLELIDCECLVNL--PQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPH- 195 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~l--p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~- 195 (357)
++.+++|++|+++++...... +..++.+++|++|+++++.-....|..+.. +++|+.|++++|......|.
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~~~~~~~ 419 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE------CPQLELLDLAFTRLKVKDAQS 419 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTT------CTTCSEEECTTCCEECCTTCC
T ss_pred hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcC------CccCCeEECCCCcCCCcccch
Confidence 344455555555554321111 334445555555555553211111222223 55566666655432222222
Q ss_pred ccCCCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchh-h--HhhhccCCcccceeeccCcCccccCCC--CC
Q 037573 196 ELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEA-L--LNGIHRLTSHQQLTVEQCPGIVAIPEN--DY 270 (357)
Q Consensus 196 ~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~-l--~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~ 270 (357)
.+..+++|+.|++++|.-....+.....+++|++|++++|.-... + +..+..+++|++|++++| .++.++.. +.
T Consensus 420 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~ 498 (606)
T 3t6q_A 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTS 498 (606)
T ss_dssp TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTTTTTT
T ss_pred hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCccChhhhcc
Confidence 245556666666665432221221111123666666655442211 1 124555666666666664 34433322 22
Q ss_pred CCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCC-CCCCCCcceEeccc
Q 037573 271 PTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQE-EIGSTSLTRLWIRD 331 (357)
Q Consensus 271 ~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~-~~~~~sL~~L~l~~ 331 (357)
+++|+.|++++ +.++...+..+..+++| +|++++ +.+..++.. +..+++|++|++++
T Consensus 499 l~~L~~L~Ls~-N~l~~~~~~~l~~l~~L-~L~L~~--N~l~~~~~~~~~~l~~L~~L~l~~ 556 (606)
T 3t6q_A 499 LKMMNHVDLSH-NRLTSSSIEALSHLKGI-YLNLAS--NHISIILPSLLPILSQQRTINLRQ 556 (606)
T ss_dssp CTTCCEEECCS-SCCCGGGGGGGTTCCSC-EEECCS--SCCCCCCGGGHHHHHTSSEEECTT
T ss_pred ccCCCEEECCC-CccCcCChhHhCccccc-EEECcC--CcccccCHhhcccCCCCCEEeCCC
Confidence 45666666666 44554444445566666 666665 344444322 22345666666654
No 23
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.71 E-value=1.8e-16 Score=146.52 Aligned_cols=243 Identities=19% Similarity=0.221 Sum_probs=168.6
Q ss_pred ccceEEeeccCCCCCCCC-ccccccchhHHHhhhcccccccchhhhhhhccCCccccccccccccCCcccccCCCcccEE
Q 037573 50 SKAWKLIIRTCCSNFNTP-SLMFNASMRYKLKDSTTRLQEIDMEKEQLILKSNSGERSKKVGQRLSTTSVIQVLCRLKYL 128 (357)
Q Consensus 50 ~~l~~l~l~~c~~~~~~~-~l~~l~~L~~l~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 128 (357)
++++.|+++++......+ .+..+++|+.+.+.++ .+..+. +..++.+++|++|
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-------------------------~~~~~~l~~L~~L 105 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIE-------------------------EDSFSSLGSLEHL 105 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEEC-------------------------TTTTTTCTTCCEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccC-------------------------HhhcCCCCCCCEE
Confidence 467777777765322222 3556666666655543 222221 2236778999999
Q ss_pred eeccCcCccccccc-cCCCCCcCEEeecCCCcchhccc--cccccccccccccccEEEeeCCCCCccc-ccccCCCCCcc
Q 037573 129 ELIDCECLVNLPQA-LHCLSSLTEITVAGCTKLVSFLE--LSSVAEMFAIITSFENIMVNGCDNLKCL-PHELHKLSRLQ 204 (357)
Q Consensus 129 ~l~~~~~l~~lp~~-~~~l~~L~~L~i~~c~~l~~~~~--~~~~L~~L~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~ 204 (357)
+++++. +..+|.. ++.+++|++|+++++ .+..+|. .+.. +++|+.|++++|..+..+ |..+..+++|+
T Consensus 106 ~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~------l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 177 (353)
T 2z80_A 106 DLSYNY-LSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSH------LTKLQILRVGNMDTFTKIQRKDFAGLTFLE 177 (353)
T ss_dssp ECCSSC-CSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTT------CTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred ECCCCc-CCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhcc------CCCCcEEECCCCccccccCHHHccCCCCCC
Confidence 999875 5666654 788999999999985 5667766 3335 889999999987666666 45678899999
Q ss_pred EEEecCCCCCccc-CCCCCCCCCcceEEeccCCcchhhHhh-hccCCcccceeeccCcCccccCCC-----CCCCCcceE
Q 037573 205 QIEIRNCPSLVSF-PERGLPSTNLTAVCVINCEKLEALLNG-IHRLTSHQQLTVEQCPGIVAIPEN-----DYPTNLTIL 277 (357)
Q Consensus 205 ~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~-----~~~~~L~~L 277 (357)
.|+++++. +..+ +.....+++|++|+++++. ++.+|.. +..+++|++|+++++ .+..++.. .....++.+
T Consensus 178 ~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l 254 (353)
T 2z80_A 178 ELEIDASD-LQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKF 254 (353)
T ss_dssp EEEEEETT-CCEECTTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESC-BCTTCCCC------CCCCCCEE
T ss_pred EEECCCCC-cCccCHHHHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCC-ccccccccccccccccchhhcc
Confidence 99999864 4444 3322233489999998865 5677654 445889999999885 55554432 235678888
Q ss_pred EecCCCCce-----ecccccccccCCccEEEEeccCCCCCcCCCCC-CCCCCcceEecccCc
Q 037573 278 KITDVNIFK-----SLFQWGLHRLNSLKELIVNGEFPDMISFPQEE-IGSTSLTRLWIRDFQ 333 (357)
Q Consensus 278 ~l~~c~~l~-----~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~-~~~~sL~~L~l~~c~ 333 (357)
+++++ .+. .++. .+..+++|++|++++ +.+..+|... ..+++|++|++++.+
T Consensus 255 ~L~~~-~l~~~~l~~l~~-~l~~l~~L~~L~Ls~--N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 255 TFRNV-KITDESLFQVMK-LLNQISGLLELEFSR--NQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp EEESC-BCCHHHHHHHHH-HHHTCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccc-cccCcchhhhHH-HHhcccCCCEEECCC--CCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 88873 344 2333 367899999999998 6888999875 578999999998753
No 24
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.70 E-value=4e-16 Score=142.97 Aligned_cols=194 Identities=17% Similarity=0.232 Sum_probs=111.9
Q ss_pred ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhcccc-ccccccccccccccEEEeeCCCCCc---ccc
Q 037573 119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLEL-SSVAEMFAIITSFENIMVNGCDNLK---CLP 194 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~-~~~L~~L~~l~~L~~L~l~~c~~l~---~lp 194 (357)
++.+++|++|+++++. +..+|..+. ++|++|+++++ .+..++.. +.. +++|+.|+++++. +. ..|
T Consensus 98 ~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~------l~~L~~L~l~~n~-l~~~~~~~ 166 (332)
T 2ft3_A 98 FSPLRKLQKLYISKNH-LVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSG------LRNMNCIEMGGNP-LENSGFEP 166 (332)
T ss_dssp STTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSS------CSSCCEEECCSCC-CBGGGSCT
T ss_pred hhCcCCCCEEECCCCc-CCccCcccc--ccCCEEECCCC-ccCccCHhHhCC------CccCCEEECCCCc-cccCCCCc
Confidence 4445555555555543 344444332 45555555552 33334332 123 5566666666543 22 223
Q ss_pred cccCCCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhH-hhhccCCcccceeeccCcCccccCCC--CCC
Q 037573 195 HELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALL-NGIHRLTSHQQLTVEQCPGIVAIPEN--DYP 271 (357)
Q Consensus 195 ~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~ 271 (357)
..+..+ +|+.|+++++ .+..+|....+ +|++|+++++. ++.++ ..+..+++|++|+++++ .+..++.. ..+
T Consensus 167 ~~~~~l-~L~~L~l~~n-~l~~l~~~~~~--~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l 240 (332)
T 2ft3_A 167 GAFDGL-KLNYLRISEA-KLTGIPKDLPE--TLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFL 240 (332)
T ss_dssp TSSCSC-CCSCCBCCSS-BCSSCCSSSCS--SCSCCBCCSSC-CCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTGGGGC
T ss_pred ccccCC-ccCEEECcCC-CCCccCccccC--CCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCC-cCCcCChhHhhCC
Confidence 334444 5666666653 45555554333 77777777754 44443 56777788888888774 56555543 336
Q ss_pred CCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCC-------CCCcceEecccCc
Q 037573 272 TNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIG-------STSLTRLWIRDFQ 333 (357)
Q Consensus 272 ~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~-------~~sL~~L~l~~c~ 333 (357)
++|+.|++++ +.++.++.. +..+++|++|++++ +.+..++...+. .++|+.|++.+.+
T Consensus 241 ~~L~~L~L~~-N~l~~lp~~-l~~l~~L~~L~l~~--N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 241 PTLRELHLDN-NKLSRVPAG-LPDLKLLQVVYLHT--NNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp TTCCEEECCS-SCCCBCCTT-GGGCTTCCEEECCS--SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred CCCCEEECCC-CcCeecChh-hhcCccCCEEECCC--CCCCccChhHccccccccccccccceEeecCc
Confidence 7888888887 567766654 67788888888887 567776644321 3567777777665
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.70 E-value=4e-16 Score=149.17 Aligned_cols=249 Identities=20% Similarity=0.196 Sum_probs=146.6
Q ss_pred CCCCCcccceEEeeccCCCCCCCCccccccchhHHHhhhcccccccchhhhhhh--------------ccCCcccccccc
Q 037573 44 PDQPSTSKAWKLIIRTCCSNFNTPSLMFNASMRYKLKDSTTRLQEIDMEKEQLI--------------LKSNSGERSKKV 109 (357)
Q Consensus 44 ~~~~~~~~l~~l~l~~c~~~~~~~~l~~l~~L~~l~~~~~~~l~~i~~~~~~l~--------------~~~~~~~~~~~~ 109 (357)
|.....+.++++.++++.....++.++.+++|+.+.+.++.-.+.++..++.+. +........
T Consensus 5 p~~~~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~--- 81 (454)
T 1jl5_A 5 PRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL--- 81 (454)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS---
T ss_pred ccccccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC---
Confidence 434456788888888776633344688999999998887654444444432211 011110000
Q ss_pred ccccCCcccccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCC
Q 037573 110 GQRLSTTSVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDN 189 (357)
Q Consensus 110 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~ 189 (357)
.+...+. ..++|++|+++++. +..+|. .+++|++|+++++ .+..++.. .++|++|++++| .
T Consensus 82 --~l~~lp~--~~~~L~~L~l~~n~-l~~lp~---~~~~L~~L~l~~n-~l~~l~~~---------~~~L~~L~L~~n-~ 142 (454)
T 1jl5_A 82 --GLSSLPE--LPPHLESLVASCNS-LTELPE---LPQSLKSLLVDNN-NLKALSDL---------PPLLEYLGVSNN-Q 142 (454)
T ss_dssp --CCSCCCS--CCTTCSEEECCSSC-CSSCCC---CCTTCCEEECCSS-CCSCCCSC---------CTTCCEEECCSS-C
T ss_pred --ccccCCC--CcCCCCEEEccCCc-CCcccc---ccCCCcEEECCCC-ccCcccCC---------CCCCCEEECcCC-C
Confidence 0111111 13688888888765 555775 2478888888874 56555542 468999999986 4
Q ss_pred CcccccccCCCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCC
Q 037573 190 LKCLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEND 269 (357)
Q Consensus 190 l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 269 (357)
+..+| .++.+++|++|+++++ .++.+|.. .+ +|++|+++++ .++.+| .++.+++|++|+++++ .++.+|.
T Consensus 143 l~~lp-~~~~l~~L~~L~l~~N-~l~~lp~~-~~--~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~-- 212 (454)
T 1jl5_A 143 LEKLP-ELQNSSFLKIIDVDNN-SLKKLPDL-PP--SLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNN-SLKKLPD-- 212 (454)
T ss_dssp CSSCC-CCTTCTTCCEEECCSS-CCSCCCCC-CT--TCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSS-CCSSCCC--
T ss_pred CCCCc-ccCCCCCCCEEECCCC-cCcccCCC-cc--cccEEECcCC-cCCcCc-cccCCCCCCEEECCCC-cCCcCCC--
Confidence 66788 5889999999999985 66667642 33 8999999886 466776 6888999999999885 5666654
Q ss_pred CCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccC
Q 037573 270 YPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDF 332 (357)
Q Consensus 270 ~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c 332 (357)
.+++|++|++++ +.++.++. +..+++|++|++++ +.+..+|. .+++|++|+++++
T Consensus 213 ~~~~L~~L~l~~-n~l~~lp~--~~~l~~L~~L~l~~--N~l~~l~~---~~~~L~~L~l~~N 267 (454)
T 1jl5_A 213 LPLSLESIVAGN-NILEELPE--LQNLPFLTTIYADN--NLLKTLPD---LPPSLEALNVRDN 267 (454)
T ss_dssp CCTTCCEEECCS-SCCSSCCC--CTTCTTCCEEECCS--SCCSSCCS---CCTTCCEEECCSS
T ss_pred CcCcccEEECcC-CcCCcccc--cCCCCCCCEEECCC--CcCCcccc---cccccCEEECCCC
Confidence 346888888888 45666653 57788888888887 56666665 3466666666554
No 26
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.70 E-value=2.3e-16 Score=150.76 Aligned_cols=198 Identities=15% Similarity=0.217 Sum_probs=127.9
Q ss_pred ccCCCcccEEeeccCcCcccc-ccccCCCCCcCEEeecCCCcchhccccc-cccccccccccccEEEeeCCCCCccccc-
Q 037573 119 IQVLCRLKYLELIDCECLVNL-PQALHCLSSLTEITVAGCTKLVSFLELS-SVAEMFAIITSFENIMVNGCDNLKCLPH- 195 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~i~~c~~l~~~~~~~-~~L~~L~~l~~L~~L~l~~c~~l~~lp~- 195 (357)
++.+++|++|+++++. +..+ +..+..+++|++|+++++ .+..++... .. +++|+.|+++++. +..+|.
T Consensus 95 ~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~------l~~L~~L~L~~N~-l~~~~~~ 165 (452)
T 3zyi_A 95 FRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEY------LSKLRELWLRNNP-IESIPSY 165 (452)
T ss_dssp TTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSS------CTTCCEEECCSCC-CCEECTT
T ss_pred cCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCC-cCCccChhhhcc------cCCCCEEECCCCC-cceeCHh
Confidence 5667777778877764 3443 356777777888877774 455565542 24 6777777777753 555554
Q ss_pred ccCCCCCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--CCCC
Q 037573 196 ELHKLSRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPT 272 (357)
Q Consensus 196 ~l~~l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~ 272 (357)
.+..+++|+.|++++|..+..++...+ .+++|++|+++++. ++.+| .+..+++|++|+++++ .+..++.. ..++
T Consensus 166 ~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~ 242 (452)
T 3zyi_A 166 AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMP-NLTPLVGLEELEMSGN-HFPEIRPGSFHGLS 242 (452)
T ss_dssp TTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCC-CCTTCTTCCEEECTTS-CCSEECGGGGTTCT
T ss_pred HHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccc-cccccccccEEECcCC-cCcccCcccccCcc
Confidence 456677777777777777777665322 22377777777643 55554 4667777777777774 45544332 2356
Q ss_pred CcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCC-CCCCCcceEeccc
Q 037573 273 NLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEE-IGSTSLTRLWIRD 331 (357)
Q Consensus 273 ~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~-~~~~sL~~L~l~~ 331 (357)
+|+.|++++ +.++.+.+..+..+++|++|++++ +.+..+|... ..+++|++|++++
T Consensus 243 ~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 243 SLKKLWVMN-SQVSLIERNAFDGLASLVELNLAH--NNLSSLPHDLFTPLRYLVELHLHH 299 (452)
T ss_dssp TCCEEECTT-SCCCEECTTTTTTCTTCCEEECCS--SCCSCCCTTSSTTCTTCCEEECCS
T ss_pred CCCEEEeCC-CcCceECHHHhcCCCCCCEEECCC--CcCCccChHHhccccCCCEEEccC
Confidence 777777777 556656555566777777777776 5666666543 3466777777765
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=3.8e-16 Score=154.48 Aligned_cols=267 Identities=11% Similarity=0.091 Sum_probs=162.8
Q ss_pred CcccceEEeeccCCCCCCC-CccccccchhHHHhhhcccccccchh-hhhh-hccCCccccccccccccCCcccccCCCc
Q 037573 48 STSKAWKLIIRTCCSNFNT-PSLMFNASMRYKLKDSTTRLQEIDME-KEQL-ILKSNSGERSKKVGQRLSTTSVIQVLCR 124 (357)
Q Consensus 48 ~~~~l~~l~l~~c~~~~~~-~~l~~l~~L~~l~~~~~~~l~~i~~~-~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 124 (357)
.+++++.|++++|...... ..++.+++|+.+.+.++. +..+... +..+ .+..+....+. ...++ +..++.+++
T Consensus 73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~--l~~l~-~~~~~~l~~ 148 (597)
T 3oja_B 73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERND--LSSLP-RGIFHNTPK 148 (597)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC--CCCCC-TTTTTTCTT
T ss_pred cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCCC--CCCCC-HHHhccCCC
Confidence 3568999999988743333 367888888888887654 4444332 2222 11111111111 11111 122567888
Q ss_pred ccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhcccccc-ccccc----------cccccccEEEeeCCCCCccc
Q 037573 125 LKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSS-VAEMF----------AIITSFENIMVNGCDNLKCL 193 (357)
Q Consensus 125 L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~-~L~~L----------~~l~~L~~L~l~~c~~l~~l 193 (357)
|++|+++++......|..++.+++|++|+++++ .+..++.... +|+.| ...++|+.|+++++ .+..+
T Consensus 149 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n-~l~~~ 226 (597)
T 3oja_B 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN-SINVV 226 (597)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSS-CCCEE
T ss_pred CCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCC-ccccc
Confidence 888888887643334456778888888888874 4444432211 12211 12445555666553 24444
Q ss_pred ccccCCCCCccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC-CCC
Q 037573 194 PHELHKLSRLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN-DYP 271 (357)
Q Consensus 194 p~~l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~ 271 (357)
|..+ .++|+.|+++++ .+...+. ..++ +|++|+++++.--...|..+..+++|++|+++++ .+..+|.. +.+
T Consensus 227 ~~~~--~~~L~~L~L~~n-~l~~~~~l~~l~--~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l 300 (597)
T 3oja_B 227 RGPV--NVELTILKLQHN-NLTDTAWLLNYP--GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPI 300 (597)
T ss_dssp ECSC--CSCCCEEECCSS-CCCCCGGGGGCT--TCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCC
T ss_pred cccc--CCCCCEEECCCC-CCCCChhhccCC--CCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccC
Confidence 4332 356777777765 3333322 3334 8888888886543444667888888999998884 67767655 336
Q ss_pred CCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccC
Q 037573 272 TNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDF 332 (357)
Q Consensus 272 ~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c 332 (357)
++|+.|++++ +.++.++.. +..+++|++|++++ +.+..++ ...+++|++|++++.
T Consensus 301 ~~L~~L~Ls~-N~l~~i~~~-~~~l~~L~~L~L~~--N~l~~~~--~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 301 PTLKVLDLSH-NHLLHVERN-QPQFDRLENLYLDH--NSIVTLK--LSTHHTLKNLTLSHN 355 (597)
T ss_dssp TTCCEEECCS-SCCCCCGGG-HHHHTTCSEEECCS--SCCCCCC--CCTTCCCSEEECCSS
T ss_pred CCCcEEECCC-CCCCccCcc-cccCCCCCEEECCC--CCCCCcC--hhhcCCCCEEEeeCC
Confidence 7899999988 567767654 67888999999988 4566665 335678888888864
No 28
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=2.7e-16 Score=142.34 Aligned_cols=200 Identities=19% Similarity=0.128 Sum_probs=135.0
Q ss_pred ccCCCcccEEeeccCcCcccc---ccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccccc
Q 037573 119 IQVLCRLKYLELIDCECLVNL---PQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPH 195 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~l---p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~ 195 (357)
++.+++|++|+++++. +..+ +..+..+++|++|+++++ .+..+|..+.. +++|+.|+++++ .+..++.
T Consensus 48 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~------l~~L~~L~l~~n-~l~~~~~ 118 (306)
T 2z66_A 48 FDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLG------LEQLEHLDFQHS-NLKQMSE 118 (306)
T ss_dssp TTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEET------CTTCCEEECTTS-EEESSTT
T ss_pred hhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCC-ccccChhhcCC------CCCCCEEECCCC-ccccccc
Confidence 5667888888888765 3332 455667888888888875 46666665545 788888888875 3555543
Q ss_pred --ccCCCCCccEEEecCCCCCcccCCC-CCCCCCcceEEeccCCcch-hhHhhhccCCcccceeeccCcCccccCCC--C
Q 037573 196 --ELHKLSRLQQIEIRNCPSLVSFPER-GLPSTNLTAVCVINCEKLE-ALLNGIHRLTSHQQLTVEQCPGIVAIPEN--D 269 (357)
Q Consensus 196 --~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~ 269 (357)
.+..+++|+.|+++++. +...+.. .-.+++|++|+++++.... .+|..+..+++|++|+++++ .++.++.. .
T Consensus 119 ~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~ 196 (306)
T 2z66_A 119 FSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFN 196 (306)
T ss_dssp TTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTT
T ss_pred chhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC-CcCCcCHHHhc
Confidence 57778888888888753 3333322 1123488888888765322 35677788888888888885 56655433 3
Q ss_pred CCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCc-CCCCCCCC-CCcceEecccC
Q 037573 270 YPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMIS-FPQEEIGS-TSLTRLWIRDF 332 (357)
Q Consensus 270 ~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~-l~~~~~~~-~sL~~L~l~~c 332 (357)
.+++|++|++++ +.++.++...+..+++|++|++++ | .+.. .|..+... ++|++|++++.
T Consensus 197 ~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~-N-~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 197 SLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSL-N-HIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp TCTTCCEEECTT-SCCSBCCSGGGTTCTTCCEEECTT-S-CCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred CCCCCCEEECCC-CccCccChhhccCcccCCEeECCC-C-CCcccCHHHHHhhhccCCEEEccCC
Confidence 367888888888 567766655567788888888888 4 4544 34444333 58888888763
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=1.3e-16 Score=157.88 Aligned_cols=262 Identities=14% Similarity=0.096 Sum_probs=128.8
Q ss_pred CCcccceEEeeccCCCCCCCCc-cccccchhHHHhhhcccccccch-hhhhh-hccCCccccccccccccCCcccccCCC
Q 037573 47 PSTSKAWKLIIRTCCSNFNTPS-LMFNASMRYKLKDSTTRLQEIDM-EKEQL-ILKSNSGERSKKVGQRLSTTSVIQVLC 123 (357)
Q Consensus 47 ~~~~~l~~l~l~~c~~~~~~~~-l~~l~~L~~l~~~~~~~l~~i~~-~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (357)
....+++.+.+.++.....++. +..+++|+.+.+.++. +..+.. .+..+ .+..+....+. ... ..+..++.++
T Consensus 48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~--l~~-~~~~~~~~l~ 123 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNA--IRY-LPPHVFQNVP 123 (597)
T ss_dssp GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC--CCC-CCTTTTTTCT
T ss_pred ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCc--CCC-CCHHHHcCCC
Confidence 3446778888877653222222 4566777777666543 333322 11111 11111100000 000 0112234455
Q ss_pred cccEEeeccCcCccccccc-cCCCCCcCEEeecCCCcchhccc-cccccccccccccccEEEeeCCCCCcccccccCCCC
Q 037573 124 RLKYLELIDCECLVNLPQA-LHCLSSLTEITVAGCTKLVSFLE-LSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLS 201 (357)
Q Consensus 124 ~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~i~~c~~l~~~~~-~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~ 201 (357)
+|++|+++++. +..+|.. ++.+++|++|+++++ .+..+++ .+.. +++|+.|++++|. +..++ ++.++
T Consensus 124 ~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~------l~~L~~L~L~~N~-l~~~~--~~~l~ 192 (597)
T 3oja_B 124 LLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQA------TTSLQNLQLSSNR-LTHVD--LSLIP 192 (597)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTT------CTTCCEEECTTSC-CSBCC--GGGCT
T ss_pred CCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhc------CCcCcEEECcCCC-CCCcC--hhhhh
Confidence 55555555543 3344433 345555555555553 2333322 2223 4555555555532 33332 22233
Q ss_pred CccEEEecCC------------------CCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCcc
Q 037573 202 RLQQIEIRNC------------------PSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIV 263 (357)
Q Consensus 202 ~L~~L~l~~c------------------~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~ 263 (357)
+|+.|+++++ ..+..++.... ++|+.|++++|. ++.. ..+..+++|++|+++++ .+.
T Consensus 193 ~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~--~~L~~L~L~~n~-l~~~-~~l~~l~~L~~L~Ls~N-~l~ 267 (597)
T 3oja_B 193 SLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN--VELTILKLQHNN-LTDT-AWLLNYPGLVEVDLSYN-ELE 267 (597)
T ss_dssp TCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCC--SCCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSS-CCC
T ss_pred hhhhhhcccCccccccCCchhheeeccCCcccccccccC--CCCCEEECCCCC-CCCC-hhhccCCCCCEEECCCC-ccC
Confidence 3333333321 11112221111 256666665543 3333 45677778888888774 444
Q ss_pred cc-CCC-CCCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccC
Q 037573 264 AI-PEN-DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDF 332 (357)
Q Consensus 264 ~l-~~~-~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c 332 (357)
.+ |.. +.+++|+.|++++ +.++.++.. +..+++|++|++++ +.+..+|..+..+++|++|+++++
T Consensus 268 ~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~-~~~l~~L~~L~Ls~--N~l~~i~~~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 268 KIMYHPFVKMQRLERLYISN-NRLVALNLY-GQPIPTLKVLDLSH--NHLLHVERNQPQFDRLENLYLDHN 334 (597)
T ss_dssp EEESGGGTTCSSCCEEECTT-SCCCEEECS-SSCCTTCCEEECCS--SCCCCCGGGHHHHTTCSEEECCSS
T ss_pred CCCHHHhcCccCCCEEECCC-CCCCCCCcc-cccCCCCcEEECCC--CCCCccCcccccCCCCCEEECCCC
Confidence 44 222 3367788888887 566666543 45678888888887 466677766656777888777654
No 30
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.70 E-value=6.2e-16 Score=147.82 Aligned_cols=196 Identities=20% Similarity=0.261 Sum_probs=158.8
Q ss_pred CcccEEeeccCcCccc-cccccCCCCCcCEEeecCCCcchhccc-cccccccccccccccEEEeeCCCCCcccccc-cCC
Q 037573 123 CRLKYLELIDCECLVN-LPQALHCLSSLTEITVAGCTKLVSFLE-LSSVAEMFAIITSFENIMVNGCDNLKCLPHE-LHK 199 (357)
Q Consensus 123 ~~L~~L~l~~~~~l~~-lp~~~~~l~~L~~L~i~~c~~l~~~~~-~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~-l~~ 199 (357)
+++++|+++++. +.. .|..+..+++|++|+++++ .+..++. .+.. +++|+.|+++++ .+..+|.. +..
T Consensus 75 ~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~------l~~L~~L~L~~n-~l~~~~~~~~~~ 145 (452)
T 3zyi_A 75 SNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNG------LASLNTLELFDN-WLTVIPSGAFEY 145 (452)
T ss_dssp TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTT------CTTCCEEECCSS-CCSBCCTTTSSS
T ss_pred CCccEEECcCCc-CceECHHHcCCCCCCCEEECCCC-ccCCcChhhccC------cccCCEEECCCC-cCCccChhhhcc
Confidence 689999999986 455 4667899999999999985 5666654 3335 899999999996 47777654 778
Q ss_pred CCCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhHh-hhccCCcccceeeccCcCccccCCCCCCCCcceE
Q 037573 200 LSRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALLN-GIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTIL 277 (357)
Q Consensus 200 l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L 277 (357)
+++|+.|+++++ .+..++...+ .+++|++|++++|+.++.++. .+..+++|++|+++++ .+..+|....+++|+.|
T Consensus 146 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L 223 (452)
T 3zyi_A 146 LSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEEL 223 (452)
T ss_dssp CTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCCCTTCTTCCEE
T ss_pred cCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccccccccccccEE
Confidence 999999999985 5777776322 235999999999998888865 5788999999999995 78888876678999999
Q ss_pred EecCCCCceecccccccccCCccEEEEeccCCCCCcC-CCCCCCCCCcceEecccC
Q 037573 278 KITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISF-PQEEIGSTSLTRLWIRDF 332 (357)
Q Consensus 278 ~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l-~~~~~~~~sL~~L~l~~c 332 (357)
++++ +.++.+.+..+..+++|++|++.+ +.+..+ +..+..+++|++|+++++
T Consensus 224 ~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 224 EMSG-NHFPEIRPGSFHGLSSLKKLWVMN--SQVSLIERNAFDGLASLVELNLAHN 276 (452)
T ss_dssp ECTT-SCCSEECGGGGTTCTTCCEEECTT--SCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ECcC-CcCcccCcccccCccCCCEEEeCC--CcCceECHHHhcCCCCCCEEECCCC
Confidence 9999 678877777789999999999998 567666 445556899999999864
No 31
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.69 E-value=5.1e-16 Score=142.30 Aligned_cols=196 Identities=16% Similarity=0.204 Sum_probs=154.9
Q ss_pred cccCCCcccEEeeccCcCccc-cccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccccc-
Q 037573 118 VIQVLCRLKYLELIDCECLVN-LPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPH- 195 (357)
Q Consensus 118 ~~~~l~~L~~L~l~~~~~l~~-lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~- 195 (357)
.++.+++|++|+++++. +.. .|..++.+++|++|+++++ .+..+|... .++|++|+++++ .+..+|.
T Consensus 73 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~--------~~~L~~L~l~~n-~i~~~~~~ 141 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNL--------PSSLVELRIHDN-RIRKVPKG 141 (332)
T ss_dssp TTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCSS-CCCSCCSSC--------CTTCCEEECCSS-CCCCCCSG
T ss_pred HhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCCC-cCCccCccc--------cccCCEEECCCC-ccCccCHh
Confidence 47789999999999986 455 4778999999999999985 677777754 479999999986 4667765
Q ss_pred ccCCCCCccEEEecCCCCCcc--cCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--CCC
Q 037573 196 ELHKLSRLQQIEIRNCPSLVS--FPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN--DYP 271 (357)
Q Consensus 196 ~l~~l~~L~~L~l~~c~~l~~--l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~ 271 (357)
.+..+++|+.|+++++ .++. +....+...+|++|+++++. ++.+|..+. ++|++|+++++ .++.++.. ..+
T Consensus 142 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~l~~l 216 (332)
T 2ft3_A 142 VFSGLRNMNCIEMGGN-PLENSGFEPGAFDGLKLNYLRISEAK-LTGIPKDLP--ETLNELHLDHN-KIQAIELEDLLRY 216 (332)
T ss_dssp GGSSCSSCCEEECCSC-CCBGGGSCTTSSCSCCCSCCBCCSSB-CSSCCSSSC--SSCSCCBCCSS-CCCCCCTTSSTTC
T ss_pred HhCCCccCCEEECCCC-ccccCCCCcccccCCccCEEECcCCC-CCccCcccc--CCCCEEECCCC-cCCccCHHHhcCC
Confidence 4788999999999986 4432 22233332389999998854 677776543 79999999985 67666543 347
Q ss_pred CCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccC
Q 037573 272 TNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDF 332 (357)
Q Consensus 272 ~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c 332 (357)
++|++|++++ +.++.+++..+..+++|++|++++ +.+..+|..+..+++|++|++++.
T Consensus 217 ~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~--N~l~~lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 217 SKLYRLGLGH-NQIRMIENGSLSFLPTLRELHLDN--NKLSRVPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp TTCSCCBCCS-SCCCCCCTTGGGGCTTCCEEECCS--SCCCBCCTTGGGCTTCCEEECCSS
T ss_pred CCCCEEECCC-CcCCcCChhHhhCCCCCCEEECCC--CcCeecChhhhcCccCCEEECCCC
Confidence 8999999999 678877766688999999999998 688899998878999999999864
No 32
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.69 E-value=6.3e-16 Score=147.25 Aligned_cols=200 Identities=15% Similarity=0.257 Sum_probs=156.8
Q ss_pred ccccCCCcccEEeeccCcCccccc-cccCCCCCcCEEeecCCCcchhcccc-ccccccccccccccEEEeeCCCCCcccc
Q 037573 117 SVIQVLCRLKYLELIDCECLVNLP-QALHCLSSLTEITVAGCTKLVSFLEL-SSVAEMFAIITSFENIMVNGCDNLKCLP 194 (357)
Q Consensus 117 ~~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~i~~c~~l~~~~~~-~~~L~~L~~l~~L~~L~l~~c~~l~~lp 194 (357)
..+..+++|++|+++++. +..++ ..+..+++|++|+++++ .+..++.. +.. +++|+.|+++++. +..+|
T Consensus 82 ~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~------l~~L~~L~L~~N~-i~~~~ 152 (440)
T 3zyj_A 82 NSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVY------LSKLKELWLRNNP-IESIP 152 (440)
T ss_dssp TTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCS------CSSCCEEECCSCC-CCEEC
T ss_pred HHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCC-cCCeeCHhHhhc------cccCceeeCCCCc-ccccC
Confidence 347788999999999986 45544 57888999999999985 67777764 335 8899999999864 66665
Q ss_pred c-ccCCCCCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--CC
Q 037573 195 H-ELHKLSRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN--DY 270 (357)
Q Consensus 195 ~-~l~~l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~ 270 (357)
. .+..+++|+.|+++++..+..++...+ .+++|++|++++| .++.+| .+..+++|++|+++++ .+..++.. ..
T Consensus 153 ~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~ 229 (440)
T 3zyj_A 153 SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIP-NLTPLIKLDELDLSGN-HLSAIRPGSFQG 229 (440)
T ss_dssp TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCC-CCTTCSSCCEEECTTS-CCCEECTTTTTT
T ss_pred HHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCcccc-ccCCCcccCEEECCCC-ccCccChhhhcc
Confidence 4 577899999999999888888876332 2348999999886 467776 5788899999999985 67766544 33
Q ss_pred CCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCC-CCCCCcceEeccc
Q 037573 271 PTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEE-IGSTSLTRLWIRD 331 (357)
Q Consensus 271 ~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~-~~~~sL~~L~l~~ 331 (357)
+++|+.|++++ +.++.+.+..+..+++|++|++++ +.+..+|... ..+++|++|++++
T Consensus 230 l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 230 LMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAH--NNLTLLPHDLFTPLHHLERIHLHH 288 (440)
T ss_dssp CTTCCEEECTT-CCCCEECTTSSTTCTTCCEEECTT--SCCCCCCTTTTSSCTTCCEEECCS
T ss_pred CccCCEEECCC-CceeEEChhhhcCCCCCCEEECCC--CCCCccChhHhccccCCCEEEcCC
Confidence 78999999999 678877777788899999999998 6888887654 3578899998885
No 33
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.69 E-value=1.9e-16 Score=156.83 Aligned_cols=260 Identities=13% Similarity=0.015 Sum_probs=173.3
Q ss_pred cceEEeeccCC-CCCCCCccccccchhHHHhhhcccccccchhhhhh-hccCCccccccccccccCCcccccCCCcccEE
Q 037573 51 KAWKLIIRTCC-SNFNTPSLMFNASMRYKLKDSTTRLQEIDMEKEQL-ILKSNSGERSKKVGQRLSTTSVIQVLCRLKYL 128 (357)
Q Consensus 51 ~l~~l~l~~c~-~~~~~~~l~~l~~L~~l~~~~~~~l~~i~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 128 (357)
.+..+.+..+. .....|.+..+++|+.+.+.++. +..++ .+..+ .+.......+. ...++ .+ .+++|+.|
T Consensus 262 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l~-~l~~~~~L~~L~l~~n~--l~~lp---~~-~l~~L~~L 333 (606)
T 3vq2_A 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS-IKYLE-DVPKHFKWQSLSIIRCQ--LKQFP---TL-DLPFLKSL 333 (606)
T ss_dssp EEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCC-CCCCC-CCCTTCCCSEEEEESCC--CSSCC---CC-CCSSCCEE
T ss_pred cHhheeccccccccccccccccCCCCCEEEecCcc-chhhh-hccccccCCEEEccccc--Ccccc---cC-CCCcccee
Confidence 56677764443 33334456677777777666543 33333 11111 11111111111 11111 23 67788888
Q ss_pred eeccCcCccccccccCCCCCcCEEeecCCCcchhc---cccccccccccccccccEEEeeCCCCCcccccccCCCCCccE
Q 037573 129 ELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSF---LELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQ 205 (357)
Q Consensus 129 ~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~---~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~ 205 (357)
+++++.....+ .++.+++|++|+++++ .+..+ +..... +++|+.|++++|. +..+|..+..+++|+.
T Consensus 334 ~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~------~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~ 403 (606)
T 3vq2_A 334 TLTMNKGSISF--KKVALPSLSYLDLSRN-ALSFSGCCSYSDLG------TNSLRHLDLSFNG-AIIMSANFMGLEELQH 403 (606)
T ss_dssp EEESCSSCEEC--CCCCCTTCCEEECCSS-CEEEEEECCHHHHC------CSCCCEEECCSCS-EEEECCCCTTCTTCCE
T ss_pred eccCCcCccch--hhccCCCCCEEECcCC-ccCCCcchhhhhcc------CCcccEeECCCCc-cccchhhccCCCCCCe
Confidence 88877555544 3567888888888875 34433 333334 7899999999864 7778888889999999
Q ss_pred EEecCCCCCcccCC-CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccc--cCCC-CCCCCcceEEecC
Q 037573 206 IEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVA--IPEN-DYPTNLTILKITD 281 (357)
Q Consensus 206 L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~--l~~~-~~~~~L~~L~l~~ 281 (357)
|+++++......+. ....+++|++|++++|......|..+..+++|++|++++|. +.. +|.. +.+++|++|++++
T Consensus 404 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~ 482 (606)
T 3vq2_A 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS-FKDNTLSNVFANTTNLTFLDLSK 482 (606)
T ss_dssp EECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTT
T ss_pred eECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc-CCCcchHHhhccCCCCCEEECCC
Confidence 99998643333331 22233599999999987666677788999999999999964 443 4543 4578999999999
Q ss_pred CCCceecccccccccCCccEEEEeccCCCCCcC-CCCCCCCCCcceEecccC
Q 037573 282 VNIFKSLFQWGLHRLNSLKELIVNGEFPDMISF-PQEEIGSTSLTRLWIRDF 332 (357)
Q Consensus 282 c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l-~~~~~~~~sL~~L~l~~c 332 (357)
+.++.+++..+..+++|++|++++ | .+..+ |..+..+++|++|+++++
T Consensus 483 -n~l~~~~~~~~~~l~~L~~L~Ls~-N-~l~~~~~~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 483 -CQLEQISWGVFDTLHRLQLLNMSH-N-NLLFLDSSHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp -SCCCEECTTTTTTCTTCCEEECCS-S-CCSCEEGGGTTTCTTCCEEECTTS
T ss_pred -CcCCccChhhhcccccCCEEECCC-C-cCCCcCHHHccCCCcCCEEECCCC
Confidence 567766666688999999999999 5 56555 666667899999999876
No 34
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.69 E-value=7.6e-16 Score=138.00 Aligned_cols=197 Identities=17% Similarity=0.238 Sum_probs=135.7
Q ss_pred CCcccEEeeccCcCccccc-cccCCCCCcCEEeecCCCcchhc-cccccccccccccccccEEEeeCCCCCccc-ccccC
Q 037573 122 LCRLKYLELIDCECLVNLP-QALHCLSSLTEITVAGCTKLVSF-LELSSVAEMFAIITSFENIMVNGCDNLKCL-PHELH 198 (357)
Q Consensus 122 l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~i~~c~~l~~~-~~~~~~L~~L~~l~~L~~L~l~~c~~l~~l-p~~l~ 198 (357)
.++|++|+++++. +..++ ..++.+++|++|+++++ .+..+ +..+.. +++|+.|+++++..+..+ |..+.
T Consensus 31 ~~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~------l~~L~~L~l~~n~~l~~~~~~~~~ 102 (285)
T 1ozn_A 31 PAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTG------LALLEQLDLSDNAQLRSVDPATFH 102 (285)
T ss_dssp CTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTT------CTTCCEEECCSCTTCCCCCTTTTT
T ss_pred CCCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCC------ccCCCEEeCCCCCCccccCHHHhc
Confidence 4688888888865 45554 45778888888888875 45555 333334 788888888887556666 56677
Q ss_pred CCCCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhHh-hhccCCcccceeeccCcCccccCCC--CCCCCc
Q 037573 199 KLSRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALLN-GIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNL 274 (357)
Q Consensus 199 ~l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L 274 (357)
.+++|+.|+++++ .+..++...+ .+++|++|+++++. ++.++. .+..+++|++|+++++ .++.++.. ..+++|
T Consensus 103 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L 179 (285)
T 1ozn_A 103 GLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSL 179 (285)
T ss_dssp TCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTC
T ss_pred CCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCC-cccccCHHHhcCcccc
Confidence 7888888888875 4444543221 23488888887754 555543 4677888888888874 66666654 336788
Q ss_pred ceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCC-CCCCCCcceEecccC
Q 037573 275 TILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQE-EIGSTSLTRLWIRDF 332 (357)
Q Consensus 275 ~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~-~~~~~sL~~L~l~~c 332 (357)
++|++++ +.++.+.+..+..+++|++|++++ +.+..++.. +..+++|++|++++.
T Consensus 180 ~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 180 DRLLLHQ-NRVAHVHPHAFRDLGRLMTLYLFA--NNLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp CEEECCS-SCCCEECTTTTTTCTTCCEEECCS--SCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred CEEECCC-CcccccCHhHccCcccccEeeCCC--CcCCcCCHHHcccCcccCEEeccCC
Confidence 8888888 556666555577888888888887 566666643 345678888888753
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.69 E-value=8.6e-16 Score=146.97 Aligned_cols=258 Identities=15% Similarity=0.096 Sum_probs=127.9
Q ss_pred cccceEEeeccCCCCCCCCccccccchhHHHhhhcccccccchhhhhh-hccCCccccccccccccCCcccccCCCcccE
Q 037573 49 TSKAWKLIIRTCCSNFNTPSLMFNASMRYKLKDSTTRLQEIDMEKEQL-ILKSNSGERSKKVGQRLSTTSVIQVLCRLKY 127 (357)
Q Consensus 49 ~~~l~~l~l~~c~~~~~~~~l~~l~~L~~l~~~~~~~l~~i~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 127 (357)
+++++.++++++... ..|.++.+++|+.+.+.++. +..++ +..+ .++........ +... .++.+++|++
T Consensus 41 l~~L~~L~Ls~n~l~-~~~~l~~l~~L~~L~Ls~n~-l~~~~--~~~l~~L~~L~Ls~N~-----l~~~-~~~~l~~L~~ 110 (457)
T 3bz5_A 41 LATLTSLDCHNSSIT-DMTGIEKLTGLTKLICTSNN-ITTLD--LSQNTNLTYLACDSNK-----LTNL-DVTPLTKLTY 110 (457)
T ss_dssp HTTCCEEECCSSCCC-CCTTGGGCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSC-----CSCC-CCTTCTTCCE
T ss_pred cCCCCEEEccCCCcc-cChhhcccCCCCEEEccCCc-CCeEc--cccCCCCCEEECcCCC-----Ccee-ecCCCCcCCE
Confidence 457777777776532 23566677777777665542 33332 1111 11111111110 1111 1455666666
Q ss_pred EeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccc---cccc-------------cccccccEEEeeCCCCCc
Q 037573 128 LELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSV---AEMF-------------AIITSFENIMVNGCDNLK 191 (357)
Q Consensus 128 L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~---L~~L-------------~~l~~L~~L~l~~c~~l~ 191 (357)
|+++++. +..+| ++.+++|++|+++++ .+..++ +.. |+.| ..+++|+.|+++++ .+.
T Consensus 111 L~L~~N~-l~~l~--~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n-~l~ 183 (457)
T 3bz5_A 111 LNCDTNK-LTKLD--VSQNPLLTYLNCARN-TLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN-KIT 183 (457)
T ss_dssp EECCSSC-CSCCC--CTTCTTCCEEECTTS-CCSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS-CCC
T ss_pred EECCCCc-CCeec--CCCCCcCCEEECCCC-ccceec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCC-ccc
Confidence 6666653 34443 555666666666553 333332 112 0000 00445555555553 244
Q ss_pred ccccccCCCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCC
Q 037573 192 CLPHELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYP 271 (357)
Q Consensus 192 ~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 271 (357)
.+| ++.+++|+.|+++++ .+..++.+.++ +|++|+++++. ++.+| +..+++|++|+++++ .++.++.. .+
T Consensus 184 ~l~--l~~l~~L~~L~l~~N-~l~~~~l~~l~--~L~~L~Ls~N~-l~~ip--~~~l~~L~~L~l~~N-~l~~~~~~-~l 253 (457)
T 3bz5_A 184 ELD--VSQNKLLNRLNCDTN-NITKLDLNQNI--QLTFLDCSSNK-LTEID--VTPLTQLTYFDCSVN-PLTELDVS-TL 253 (457)
T ss_dssp CCC--CTTCTTCCEEECCSS-CCSCCCCTTCT--TCSEEECCSSC-CSCCC--CTTCTTCSEEECCSS-CCSCCCCT-TC
T ss_pred eec--cccCCCCCEEECcCC-cCCeeccccCC--CCCEEECcCCc-ccccC--ccccCCCCEEEeeCC-cCCCcCHH-HC
Confidence 444 445555555555543 34444333333 66666665533 44454 555666666666653 44444432 22
Q ss_pred CCcceE----------EecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCcccccccc
Q 037573 272 TNLTIL----------KITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYISS 340 (357)
Q Consensus 272 ~~L~~L----------~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~~L~~l~~ 340 (357)
++|+.| ++++|..+..++ ...+++|+.|++++ |+.++.+|. ..++|+.|+++++++|+.+..
T Consensus 254 ~~L~~L~l~~n~L~~L~l~~n~~~~~~~---~~~l~~L~~L~Ls~-n~~l~~l~~---~~~~L~~L~l~~~~~L~~L~L 325 (457)
T 3bz5_A 254 SKLTTLHCIQTDLLEIDLTHNTQLIYFQ---AEGCRKIKELDVTH-NTQLYLLDC---QAAGITELDLSQNPKLVYLYL 325 (457)
T ss_dssp TTCCEEECTTCCCSCCCCTTCTTCCEEE---CTTCTTCCCCCCTT-CTTCCEEEC---TTCCCSCCCCTTCTTCCEEEC
T ss_pred CCCCEEeccCCCCCEEECCCCccCCccc---ccccccCCEEECCC-Ccccceecc---CCCcceEechhhcccCCEEEC
Confidence 333333 333322222222 24567777777777 777777765 346777777777888877754
No 36
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.68 E-value=1e-15 Score=145.83 Aligned_cols=196 Identities=14% Similarity=0.200 Sum_probs=158.8
Q ss_pred CcccEEeeccCcCcccc-ccccCCCCCcCEEeecCCCcchhcccc-ccccccccccccccEEEeeCCCCCccccc-ccCC
Q 037573 123 CRLKYLELIDCECLVNL-PQALHCLSSLTEITVAGCTKLVSFLEL-SSVAEMFAIITSFENIMVNGCDNLKCLPH-ELHK 199 (357)
Q Consensus 123 ~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~i~~c~~l~~~~~~-~~~L~~L~~l~~L~~L~l~~c~~l~~lp~-~l~~ 199 (357)
++++.|+++++. +..+ +..+..+++|++|+++++ .+..++.. +.. +++|+.|+++++ .+..+|. .+..
T Consensus 64 ~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~------l~~L~~L~L~~n-~l~~~~~~~~~~ 134 (440)
T 3zyj_A 64 TNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNG------LANLNTLELFDN-RLTTIPNGAFVY 134 (440)
T ss_dssp TTCSEEECCSCC-CCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTT------CSSCCEEECCSS-CCSSCCTTTSCS
T ss_pred CCCcEEEccCCc-CCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccC------CccCCEEECCCC-cCCeeCHhHhhc
Confidence 789999999986 5554 467899999999999995 56666543 335 899999999996 5777765 5888
Q ss_pred CCCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhHh-hhccCCcccceeeccCcCccccCCCCCCCCcceE
Q 037573 200 LSRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALLN-GIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTIL 277 (357)
Q Consensus 200 l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L 277 (357)
+++|+.|+++++ .+..++...+ .+++|++|++++++.+..++. .+..+++|++|+++++ .++.+|....+++|++|
T Consensus 135 l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L 212 (440)
T 3zyj_A 135 LSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDEL 212 (440)
T ss_dssp CSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEE
T ss_pred cccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccccCCCcccCEE
Confidence 999999999985 5677765322 235999999999888888765 5788999999999995 78888876678999999
Q ss_pred EecCCCCceecccccccccCCccEEEEeccCCCCCcCC-CCCCCCCCcceEecccC
Q 037573 278 KITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFP-QEEIGSTSLTRLWIRDF 332 (357)
Q Consensus 278 ~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~-~~~~~~~sL~~L~l~~c 332 (357)
++++ +.++.+.+..+..+++|++|++.+ +.+..++ ..+..+++|++|+++++
T Consensus 213 ~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 213 DLSG-NHLSAIRPGSFQGLMHLQKLWMIQ--SQIQVIERNAFDNLQSLVEINLAHN 265 (440)
T ss_dssp ECTT-SCCCEECTTTTTTCTTCCEEECTT--CCCCEECTTSSTTCTTCCEEECTTS
T ss_pred ECCC-CccCccChhhhccCccCCEEECCC--CceeEEChhhhcCCCCCCEEECCCC
Confidence 9999 678877777789999999999998 6777764 44456899999998763
No 37
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.68 E-value=1e-15 Score=151.56 Aligned_cols=201 Identities=14% Similarity=0.162 Sum_probs=134.1
Q ss_pred ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhc-cccccccccccccccccEEEeeCCCCCcccccc-
Q 037573 119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSF-LELSSVAEMFAIITSFENIMVNGCDNLKCLPHE- 196 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~-~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~- 196 (357)
++.+++|++|+++++. +..+|..+..+++|++|+++++. +..+ |..+.. +++|+.|++++|.....+|..
T Consensus 274 ~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~------l~~L~~L~l~~n~~~~~~~~~~ 345 (606)
T 3t6q_A 274 FHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANK-FENLCQISASN------FPSLTHLSIKGNTKRLELGTGC 345 (606)
T ss_dssp TTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCC-CSBGGGGCGGG------CTTCSEEECCSCSSCCBCCSST
T ss_pred hccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCC-cCcCchhhhhc------cCcCCEEECCCCCcccccchhh
Confidence 6677888888888774 56777777788888888888753 4443 333334 788888888887654455544
Q ss_pred cCCCCCccEEEecCCCCCccc---CCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCcccc-CCC--CC
Q 037573 197 LHKLSRLQQIEIRNCPSLVSF---PERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAI-PEN--DY 270 (357)
Q Consensus 197 l~~l~~L~~L~l~~c~~l~~l---~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l-~~~--~~ 270 (357)
+..+++|+.|+++++ .+..+ +.....+++|++|+++++.-....|..+..+++|++|+++++ .+... +.. ..
T Consensus 346 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~ 423 (606)
T 3t6q_A 346 LENLENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT-RLKVKDAQSPFQN 423 (606)
T ss_dssp TTTCTTCCEEECCSS-CCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC-CEECCTTCCTTTT
T ss_pred hhccCcCCEEECCCC-ccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC-cCCCcccchhhhC
Confidence 777888888888875 33333 222222348888888886544444567778888888888875 34433 222 33
Q ss_pred CCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCc--CC--CCCCCCCCcceEecccC
Q 037573 271 PTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMIS--FP--QEEIGSTSLTRLWIRDF 332 (357)
Q Consensus 271 ~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~--l~--~~~~~~~sL~~L~l~~c 332 (357)
+++|++|++++ +.++..++..+..+++|++|++++ | .+.. ++ ..+..+++|++|++++|
T Consensus 424 l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~-n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 424 LHLLKVLNLSH-SLLDISSEQLFDGLPALQHLNLQG-N-HFPKGNIQKTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp CTTCCEEECTT-CCCBTTCTTTTTTCTTCCEEECTT-C-BCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred cccCCEEECCC-CccCCcCHHHHhCCCCCCEEECCC-C-CCCccccccchhhccCCCccEEECCCC
Confidence 67888888888 456655455567788888888887 4 4433 22 23445788888888876
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.68 E-value=1e-15 Score=146.48 Aligned_cols=190 Identities=15% Similarity=0.102 Sum_probs=124.4
Q ss_pred ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccC
Q 037573 119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELH 198 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~ 198 (357)
++.+++|++|+++++..++.+ .++.+++|++|+++++ .+..+| +.. +++|+.|+++++ .+..++ ++
T Consensus 144 l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~l~--l~~------l~~L~~L~l~~N-~l~~~~--l~ 209 (457)
T 3bz5_A 144 VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN-KITELD--VSQ------NKLLNRLNCDTN-NITKLD--LN 209 (457)
T ss_dssp CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS-CCCCCC--CTT------CTTCCEEECCSS-CCSCCC--CT
T ss_pred cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC-ccceec--ccc------CCCCCEEECcCC-cCCeec--cc
Confidence 344455555555555444444 2445566666666653 344444 222 889999999986 466663 88
Q ss_pred CCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHh-hhccCC-------cccceeeccCcCccccCCCCC
Q 037573 199 KLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLN-GIHRLT-------SHQQLTVEQCPGIVAIPENDY 270 (357)
Q Consensus 199 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~-------~L~~L~l~~c~~l~~l~~~~~ 270 (357)
.+++|+.|+++++ .+..+|...++ +|++|+++++. ++.+|. .+..+. +|+.|++++|..+..+|. +.
T Consensus 210 ~l~~L~~L~Ls~N-~l~~ip~~~l~--~L~~L~l~~N~-l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~-~~ 284 (457)
T 3bz5_A 210 QNIQLTFLDCSSN-KLTEIDVTPLT--QLTYFDCSVNP-LTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA-EG 284 (457)
T ss_dssp TCTTCSEEECCSS-CCSCCCCTTCT--TCSEEECCSSC-CSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC-TT
T ss_pred cCCCCCEEECcCC-cccccCccccC--CCCEEEeeCCc-CCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccc-cc
Confidence 8999999999985 67778865565 99999999864 555542 222222 456677777766666664 34
Q ss_pred CCCcceEEecCCCCceecccc-------cccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEeccc
Q 037573 271 PTNLTILKITDVNIFKSLFQW-------GLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRD 331 (357)
Q Consensus 271 ~~~L~~L~l~~c~~l~~~~~~-------~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~ 331 (357)
+++|+.|++++|..+..++.. .+..+++|++|++++ ++++.++ +..+++|+.|++++
T Consensus 285 l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~--N~l~~l~--l~~l~~L~~L~l~~ 348 (457)
T 3bz5_A 285 CRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNN--TELTELD--VSHNTKLKSLSCVN 348 (457)
T ss_dssp CTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTT--CCCSCCC--CTTCTTCSEEECCS
T ss_pred cccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCC--Ccccccc--cccCCcCcEEECCC
Confidence 689999999998766654321 244567788888886 5666664 44677788887764
No 39
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.67 E-value=2.5e-15 Score=154.44 Aligned_cols=271 Identities=16% Similarity=0.123 Sum_probs=138.4
Q ss_pred CcccceEEeeccCCCC-CCCCccccccchhHHHhhhcccccccc-hhhhhh-hccCCccccccccccccCCcccccCCCc
Q 037573 48 STSKAWKLIIRTCCSN-FNTPSLMFNASMRYKLKDSTTRLQEID-MEKEQL-ILKSNSGERSKKVGQRLSTTSVIQVLCR 124 (357)
Q Consensus 48 ~~~~l~~l~l~~c~~~-~~~~~l~~l~~L~~l~~~~~~~l~~i~-~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 124 (357)
..+++++|+++.+... .....+..+++|+.+.+.++.....+. ..+..+ .++.+....+. .. ...+..++.+++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~--l~-~~~p~~~~~l~~ 98 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK--IY-FLHPDAFQGLFH 98 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC--CC-EECTTSSCSCSS
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc--Cc-ccCHhHccCCcc
Confidence 4568888888887633 334467788888888887765554442 222221 11111111110 00 011345677778
Q ss_pred ccEEeeccCcCccccccc--cCCCCCcCEEeecCCCcchhcc--ccccccccccccccccEEEeeCCCCCcccccccCCC
Q 037573 125 LKYLELIDCECLVNLPQA--LHCLSSLTEITVAGCTKLVSFL--ELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKL 200 (357)
Q Consensus 125 L~~L~l~~~~~l~~lp~~--~~~l~~L~~L~i~~c~~l~~~~--~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l 200 (357)
|++|++++|.....+|.. ++.+++|++|+++++. +..++ ..+.+ +++|+.|+++++..-...|..+..+
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~------L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGK------LNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGT------CSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhh------CCCCCEEECCCCcCCeeCHHHcccc
Confidence 888888777544434443 6777788888887753 33332 22334 5566666666543211112222221
Q ss_pred --CC------------------------------ccEEEecCCCCCcccCC-----------------------------
Q 037573 201 --SR------------------------------LQQIEIRNCPSLVSFPE----------------------------- 219 (357)
Q Consensus 201 --~~------------------------------L~~L~l~~c~~l~~l~~----------------------------- 219 (357)
++ |+.|+++++.--...+.
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 22 45555554311100000
Q ss_pred ---------CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--CCCCCcceEEecCCCCceec
Q 037573 220 ---------RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKITDVNIFKSL 288 (357)
Q Consensus 220 ---------~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~~~ 288 (357)
..+..++|++|+++++.-....+..+..+++|+.|+++++ .+..++.. ..+++|++|++++ +.++.+
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~~ 329 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN-KINKIADEAFYGLDNLQVLNLSY-NLLGEL 329 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESC-CCCEECTTTTTTCSSCCEEEEES-CCCSCC
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCC-cCCCCChHHhcCCCCCCEEECCC-CCCCcc
Confidence 0010135555555554322222344556666666666663 44444332 2256677777766 455555
Q ss_pred ccccccccCCccEEEEeccCCCCCcCCCC-CCCCCCcceEecccC
Q 037573 289 FQWGLHRLNSLKELIVNGEFPDMISFPQE-EIGSTSLTRLWIRDF 332 (357)
Q Consensus 289 ~~~~l~~l~~L~~L~l~~~c~~l~~l~~~-~~~~~sL~~L~l~~c 332 (357)
.+..+..+++|++|++++ +.+..++.. +..+++|++|+++++
T Consensus 330 ~~~~~~~l~~L~~L~L~~--N~i~~~~~~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 330 YSSNFYGLPKVAYIDLQK--NHIAIIQDQTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp CSCSCSSCTTCCEEECCS--CCCCCCCSSCSCSCCCCCEEEEETC
T ss_pred CHHHhcCCCCCCEEECCC--CCCCccChhhhcCCCCCCEEECCCC
Confidence 444456667777777776 355555432 334667777776653
No 40
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.67 E-value=2.3e-15 Score=135.37 Aligned_cols=195 Identities=19% Similarity=0.217 Sum_probs=134.3
Q ss_pred ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccc-cccccccccccccccEEEeeCCCCCccccccc
Q 037573 119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLE-LSSVAEMFAIITSFENIMVNGCDNLKCLPHEL 197 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~-~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l 197 (357)
++.+++++.++++++ .++.+|..+ .++++.|+++++ .+..++. .+.. +++|+.|+++++ .+..+|..
T Consensus 6 ~~~l~~l~~l~~~~~-~l~~ip~~~--~~~l~~L~L~~N-~l~~~~~~~~~~------l~~L~~L~L~~n-~l~~~~~~- 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLTALPPDL--PKDTTILHLSEN-LLYTFSLATLMP------YTRLTQLNLDRA-ELTKLQVD- 73 (290)
T ss_dssp EECSTTCCEEECTTS-CCSSCCSCC--CTTCCEEECTTS-CCSEEEGGGGTT------CTTCCEEECTTS-CCCEEECC-
T ss_pred ccccCCccEEECCCC-CCCcCCCCC--CCCCCEEEcCCC-cCCccCHHHhhc------CCCCCEEECCCC-ccCcccCC-
Confidence 456777888888775 366777654 267888888874 4544433 2334 778888888775 46666653
Q ss_pred CCCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhH-hhhccCCcccceeeccCcCccccCCCC--CCCCc
Q 037573 198 HKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALL-NGIHRLTSHQQLTVEQCPGIVAIPEND--YPTNL 274 (357)
Q Consensus 198 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L 274 (357)
+.+++|+.|+++++ .+..+|.....+++|++|+++++ .++.+| ..+..+++|++|+++++ .+..++... .+++|
T Consensus 74 ~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 150 (290)
T 1p9a_G 74 GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKL 150 (290)
T ss_dssp SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTC
T ss_pred CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCC
Confidence 66788888888864 56666653333347888888774 355554 45777888888888774 666666543 35788
Q ss_pred ceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEeccc
Q 037573 275 TILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRD 331 (357)
Q Consensus 275 ~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~ 331 (357)
+.|++++ +.++.++...+..+++|++|++++ +.+..+|...+..++|++|++.+
T Consensus 151 ~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~--N~l~~ip~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 151 EKLSLAN-NNLTELPAGLLNGLENLDTLLLQE--NSLYTIPKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp CEEECTT-SCCSCCCTTTTTTCTTCCEEECCS--SCCCCCCTTTTTTCCCSEEECCS
T ss_pred CEEECCC-CcCCccCHHHhcCcCCCCEEECCC--CcCCccChhhcccccCCeEEeCC
Confidence 8888887 667777666566788888888887 67788887777777888887774
No 41
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.67 E-value=1.1e-15 Score=149.53 Aligned_cols=269 Identities=15% Similarity=0.129 Sum_probs=153.9
Q ss_pred cccceEEeeccCCCCCC-CCccccccchhHHHhhhcccccccc-hhhhhh-hccCCccccccccccccCCcccccCCCcc
Q 037573 49 TSKAWKLIIRTCCSNFN-TPSLMFNASMRYKLKDSTTRLQEID-MEKEQL-ILKSNSGERSKKVGQRLSTTSVIQVLCRL 125 (357)
Q Consensus 49 ~~~l~~l~l~~c~~~~~-~~~l~~l~~L~~l~~~~~~~l~~i~-~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 125 (357)
++++++++++++..... ...+..+++|+.+.+.++. +..+. ..+..+ .++........ ... ..+..++.+++|
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~--l~~-~~~~~~~~l~~L 100 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDNH--LSS-LSSSWFGPLSSL 100 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSC--CCS-CCHHHHTTCTTC
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEECCCCc--cCc-cCHHHhccCCCC
Confidence 35788888888763322 3356778888888777653 33333 222222 11111111110 000 112237788999
Q ss_pred cEEeeccCcCcc-ccccccCCCCCcCEEeecCCCcchhccc-cccccccccccccccEEEeeCCCCCcccccccCCC---
Q 037573 126 KYLELIDCECLV-NLPQALHCLSSLTEITVAGCTKLVSFLE-LSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKL--- 200 (357)
Q Consensus 126 ~~L~l~~~~~l~-~lp~~~~~l~~L~~L~i~~c~~l~~~~~-~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l--- 200 (357)
++|+++++.... ..|..++.+++|++|+++++..+..+|. .+.. +++|+.|+++++......|..++.+
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~------l~~L~~L~L~~n~l~~~~~~~l~~l~~L 174 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG------LTSLNELEIKALSLRNYQSQSLKSIRDI 174 (549)
T ss_dssp CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT------CCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhc------ccccCeeeccCCcccccChhhhhccccC
Confidence 999999886332 3456788899999999998765666664 3335 8899999999876444455555544
Q ss_pred ---------------------CCccEEEecCCCCCcccCC------CCCC------------------------------
Q 037573 201 ---------------------SRLQQIEIRNCPSLVSFPE------RGLP------------------------------ 223 (357)
Q Consensus 201 ---------------------~~L~~L~l~~c~~l~~l~~------~~~~------------------------------ 223 (357)
++|+.|+++++ .+..++. ...+
T Consensus 175 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L 253 (549)
T 2z81_A 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDT-NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253 (549)
T ss_dssp EEEEEECSBSTTHHHHHHHSTTTBSEEEEESC-BCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC
T ss_pred ceEecccCcccccchhhHhhcccccEEEccCC-ccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccc
Confidence 45555555543 2222110 0000
Q ss_pred -------------------------------------------------------CCCcceEEeccCCcchhhHhhh-cc
Q 037573 224 -------------------------------------------------------STNLTAVCVINCEKLEALLNGI-HR 247 (357)
Q Consensus 224 -------------------------------------------------------~~~L~~L~l~~c~~l~~l~~~~-~~ 247 (357)
.++|++|+++++. ++.+|..+ +.
T Consensus 254 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~~~~ 332 (549)
T 2z81_A 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQH 332 (549)
T ss_dssp CEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHHHHH
T ss_pred cccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCCHHHHhc
Confidence 0122333333221 23344443 45
Q ss_pred CCcccceeeccCcCccccC----CCCCCCCcceEEecCCCCceeccc--ccccccCCccEEEEeccCCCCCcCCCCCCCC
Q 037573 248 LTSHQQLTVEQCPGIVAIP----ENDYPTNLTILKITDVNIFKSLFQ--WGLHRLNSLKELIVNGEFPDMISFPQEEIGS 321 (357)
Q Consensus 248 l~~L~~L~l~~c~~l~~l~----~~~~~~~L~~L~l~~c~~l~~~~~--~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~ 321 (357)
+++|++|+++++.-...+| ..+.+++|++|++++ +.++.++. ..+..+++|++|++++ +.+..+|..+..+
T Consensus 333 l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~l~~L~~L~Ls~--N~l~~lp~~~~~~ 409 (549)
T 2z81_A 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ-NHLRSMQKTGEILLTLKNLTSLDISR--NTFHPMPDSCQWP 409 (549)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTT-SCCCCHHHHHHHGGGCTTCCEEECTT--CCCCCCCSCCCCC
T ss_pred CccccEEEccCCccccccccchhhhhccccCcEEEccC-CcccccccchhhhhcCCCCCEEECCC--CCCccCChhhccc
Confidence 7777888887754332222 123457788888887 55665542 2356778888888887 4777777766666
Q ss_pred CCcceEecccC
Q 037573 322 TSLTRLWIRDF 332 (357)
Q Consensus 322 ~sL~~L~l~~c 332 (357)
++|++|+++++
T Consensus 410 ~~L~~L~Ls~N 420 (549)
T 2z81_A 410 EKMRFLNLSST 420 (549)
T ss_dssp TTCCEEECTTS
T ss_pred ccccEEECCCC
Confidence 77777776654
No 42
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.66 E-value=2e-15 Score=144.90 Aligned_cols=81 Identities=21% Similarity=0.214 Sum_probs=40.7
Q ss_pred hccCCcccceeeccCcCccccCCCCCCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCc
Q 037573 245 IHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSL 324 (357)
Q Consensus 245 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL 324 (357)
+..+++|++|+++++ .+..++....+++|+.|++++ +.++.+++ +..+++|++|++++ | .+..++. ...+++|
T Consensus 261 ~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~-n~l~~~~~--~~~l~~L~~L~L~~-n-~l~~~~~-~~~l~~L 333 (466)
T 1o6v_A 261 LSGLTKLTELKLGAN-QISNISPLAGLTALTNLELNE-NQLEDISP--ISNLKNLTYLTLYF-N-NISDISP-VSSLTKL 333 (466)
T ss_dssp GTTCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCS-SCCSCCGG--GGGCTTCSEEECCS-S-CCSCCGG-GGGCTTC
T ss_pred hhcCCCCCEEECCCC-ccCccccccCCCccCeEEcCC-CcccCchh--hcCCCCCCEEECcC-C-cCCCchh-hccCccC
Confidence 444455555555443 333333222345566666655 34444433 45566666666666 3 4444433 2345666
Q ss_pred ceEecccC
Q 037573 325 TRLWIRDF 332 (357)
Q Consensus 325 ~~L~l~~c 332 (357)
++|+++++
T Consensus 334 ~~L~l~~n 341 (466)
T 1o6v_A 334 QRLFFYNN 341 (466)
T ss_dssp CEEECCSS
T ss_pred CEeECCCC
Confidence 66666654
No 43
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.65 E-value=2.6e-15 Score=150.61 Aligned_cols=201 Identities=19% Similarity=0.196 Sum_probs=131.9
Q ss_pred cccCCCcccEEeeccCcCccccc-cccCCCCCcCEEeecCCCcchhccc-cccccccccccccccEEEeeCCCC--Cccc
Q 037573 118 VIQVLCRLKYLELIDCECLVNLP-QALHCLSSLTEITVAGCTKLVSFLE-LSSVAEMFAIITSFENIMVNGCDN--LKCL 193 (357)
Q Consensus 118 ~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~i~~c~~l~~~~~-~~~~L~~L~~l~~L~~L~l~~c~~--l~~l 193 (357)
.+..+++|+.|+++++...+.+| ..+..+++|++|+++++. +..++. .+.. +++|+.|+++++.. +..+
T Consensus 400 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~------~~~L~~L~l~~n~l~~~~~~ 472 (680)
T 1ziw_A 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFAL------VPSLQRLMLRRVALKNVDSS 472 (680)
T ss_dssp TTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTTT------CTTCCEEECTTSCCBCTTCS
T ss_pred hhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChhhhhc------CcccccchhccccccccccC
Confidence 45566777777777765434444 356667777777777654 333322 2223 67788888877542 2456
Q ss_pred ccccCCCCCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhHh---------hhccCCcccceeeccCcCcc
Q 037573 194 PHELHKLSRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALLN---------GIHRLTSHQQLTVEQCPGIV 263 (357)
Q Consensus 194 p~~l~~l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~---------~~~~l~~L~~L~l~~c~~l~ 263 (357)
|..+..+++|+.|+++++ .+..++...+ .+++|++|+++++. ++.++. .+..+++|++|+++++ .++
T Consensus 473 p~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~ 549 (680)
T 1ziw_A 473 PSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESN-GFD 549 (680)
T ss_dssp SCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCC
T ss_pred CcccccCCCCCEEECCCC-CCCcCChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCC-CCC
Confidence 777778888888888874 5566665322 23478888887754 454421 2567788888888774 666
Q ss_pred ccCCC--CCCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCC--CCCCcceEeccc
Q 037573 264 AIPEN--DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEI--GSTSLTRLWIRD 331 (357)
Q Consensus 264 ~l~~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~--~~~sL~~L~l~~ 331 (357)
.+|.. ..+++|+.|++++ +.++.+++..+..+++|++|++++ +.+..++.... .+++|++|++++
T Consensus 550 ~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~--N~l~~~~~~~~~~~~~~L~~l~l~~ 618 (680)
T 1ziw_A 550 EIPVEVFKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQK--NLITSVEKKVFGPAFRNLTELDMRF 618 (680)
T ss_dssp CCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTT--SCCCBCCHHHHHHHHTTCSEEECTT
T ss_pred CCCHHHcccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCC--CcCCccChhHhcccccccCEEEccC
Confidence 77754 3367888888877 677777776667788888888887 57777665432 357788888775
No 44
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.65 E-value=2.5e-15 Score=145.99 Aligned_cols=129 Identities=18% Similarity=0.174 Sum_probs=68.4
Q ss_pred CCCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcch--hhHhhhccCCcccceeeccCcCccc-cCCC--CCCC
Q 037573 198 HKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLE--ALLNGIHRLTSHQQLTVEQCPGIVA-IPEN--DYPT 272 (357)
Q Consensus 198 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~--~l~~~~~~l~~L~~L~l~~c~~l~~-l~~~--~~~~ 272 (357)
..+++|++|+++++.-...+|.....+++|++|++++|.--. .+|..+..+++|++|+++++ .+.. +|.. ..++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC-cCCcccccchhccCc
Confidence 345666666666643222233322223377777776654221 44556777777777777774 3444 5543 2245
Q ss_pred CcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccC
Q 037573 273 NLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDF 332 (357)
Q Consensus 273 ~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c 332 (357)
+|++|++++ +.++...+..+ .++|++|++++ +.+..+|.....+++|++|+++++
T Consensus 400 ~L~~L~Ls~-N~l~~~~~~~l--~~~L~~L~Ls~--N~l~~ip~~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 400 SLLSLNMSS-NILTDTIFRCL--PPRIKVLDLHS--NKIKSIPKQVVKLEALQELNVASN 454 (520)
T ss_dssp TCCEEECCS-SCCCGGGGGSC--CTTCCEEECCS--SCCCCCCGGGGGCTTCCEEECCSS
T ss_pred cCCEEECcC-CCCCcchhhhh--cccCCEEECCC--CcccccchhhhcCCCCCEEECCCC
Confidence 666666666 33332111111 14666666665 355566655555666666666554
No 45
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.65 E-value=8.7e-16 Score=139.00 Aligned_cols=223 Identities=16% Similarity=0.113 Sum_probs=159.1
Q ss_pred cccceEEeeccCCCCCCCC-ccccccchhHHHhhhcccccccchhhhhhhccCCccccccccccccCCcccccCCCcccE
Q 037573 49 TSKAWKLIIRTCCSNFNTP-SLMFNASMRYKLKDSTTRLQEIDMEKEQLILKSNSGERSKKVGQRLSTTSVIQVLCRLKY 127 (357)
Q Consensus 49 ~~~l~~l~l~~c~~~~~~~-~l~~l~~L~~l~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 127 (357)
.++++.|+++++......+ .+..+++|+.+.+.++. +..+... +..+..+++|++
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~-----------------------~~~~~~~~~L~~ 82 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCC-----------------------SQSDFGTTSLKY 82 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEE-----------------------EHHHHSCSCCCE
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCc-----------------------ccccccccccCE
Confidence 4688999998876432222 25677777777665542 2222100 122445799999
Q ss_pred EeeccCcCccccccccCCCCCcCEEeecCCCcchhccc--cccccccccccccccEEEeeCCCCCcccccccCCCCCccE
Q 037573 128 LELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLE--LSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQ 205 (357)
Q Consensus 128 L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~--~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~ 205 (357)
|+++++. +..+|..+..+++|++|+++++ .+..++. .+.. +++|+.|++++|......|..+..+++|+.
T Consensus 83 L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 154 (306)
T 2z66_A 83 LDLSFNG-VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLS------LRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154 (306)
T ss_dssp EECCSCS-EEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTT------CTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred EECCCCc-cccChhhcCCCCCCCEEECCCC-cccccccchhhhh------ccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence 9999985 6678888889999999999985 5665554 3334 889999999997544445666888999999
Q ss_pred EEecCCCCCc-ccCCCCCCCCCcceEEeccCCcchhh-HhhhccCCcccceeeccCcCccccCCC--CCCCCcceEEecC
Q 037573 206 IEIRNCPSLV-SFPERGLPSTNLTAVCVINCEKLEAL-LNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKITD 281 (357)
Q Consensus 206 L~l~~c~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~ 281 (357)
|+++++.-.. .+|.....+++|++|+++++. ++.+ |..+..+++|++|+++++ .+..++.. ..+++|+.|++++
T Consensus 155 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 232 (306)
T 2z66_A 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSL 232 (306)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTT
T ss_pred EECCCCccccccchhHHhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCC
Confidence 9999864322 245433334599999999865 5554 667889999999999985 56666543 3368999999999
Q ss_pred CCCceeccccccccc-CCccEEEEec
Q 037573 282 VNIFKSLFQWGLHRL-NSLKELIVNG 306 (357)
Q Consensus 282 c~~l~~~~~~~l~~l-~~L~~L~l~~ 306 (357)
+.++...+..+..+ ++|++|++++
T Consensus 233 -N~l~~~~~~~~~~~~~~L~~L~L~~ 257 (306)
T 2z66_A 233 -NHIMTSKKQELQHFPSSLAFLNLTQ 257 (306)
T ss_dssp -SCCCBCSSSSCCCCCTTCCEEECTT
T ss_pred -CCCcccCHHHHHhhhccCCEEEccC
Confidence 56776655557777 4999999998
No 46
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.64 E-value=4.2e-15 Score=145.32 Aligned_cols=273 Identities=16% Similarity=0.114 Sum_probs=156.3
Q ss_pred CCcccceEEeeccCCCCCCC-CccccccchhHHHhhhcccccccchh-hhhh-hccCCccccccccccccCCcccccCCC
Q 037573 47 PSTSKAWKLIIRTCCSNFNT-PSLMFNASMRYKLKDSTTRLQEIDME-KEQL-ILKSNSGERSKKVGQRLSTTSVIQVLC 123 (357)
Q Consensus 47 ~~~~~l~~l~l~~c~~~~~~-~~l~~l~~L~~l~~~~~~~l~~i~~~-~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (357)
..+++++.|++++|...... ..+..+++|+.+.++++. +..+... +..+ .++........ ......+..++.++
T Consensus 47 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 47 RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNP--YQTLGVTSLFPNLT 123 (549)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEEECTTCC--CSSSCSSCSCTTCT
T ss_pred hcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcEEECCCCc--ccccchhhhhhccC
Confidence 45678999999998744333 357888888888887754 4444333 3322 12222111111 11112244578889
Q ss_pred cccEEeeccCcCccccc-cccCCCCCcCEEeecCCCcchhccccccc---cccccc---------------cccccEEEe
Q 037573 124 RLKYLELIDCECLVNLP-QALHCLSSLTEITVAGCTKLVSFLELSSV---AEMFAI---------------ITSFENIMV 184 (357)
Q Consensus 124 ~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~i~~c~~l~~~~~~~~~---L~~L~~---------------l~~L~~L~l 184 (357)
+|++|+++++...+.+| ..++.+++|++|+++++.--...|..+.. |+.|.+ +++|+.|++
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 203 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEE
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEc
Confidence 99999999887677776 46888899999999886433334444433 333321 678999999
Q ss_pred eCCCCCcccc---c-----------------------------ccCCC--------------------------------
Q 037573 185 NGCDNLKCLP---H-----------------------------ELHKL-------------------------------- 200 (357)
Q Consensus 185 ~~c~~l~~lp---~-----------------------------~l~~l-------------------------------- 200 (357)
+++. +..++ . .+..+
T Consensus 204 ~~n~-l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~ 282 (549)
T 2z81_A 204 RDTN-LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK 282 (549)
T ss_dssp ESCB-CTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTT
T ss_pred cCCc-cccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcc
Confidence 8864 22210 0 00111
Q ss_pred ---------------------------CCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhHh---hhccCC
Q 037573 201 ---------------------------SRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALLN---GIHRLT 249 (357)
Q Consensus 201 ---------------------------~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~---~~~~l~ 249 (357)
++|+.|+++++ .+..+|...+ .+++|++|+++++.-...+|. .++.++
T Consensus 283 L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n-~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~ 361 (549)
T 2z81_A 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS-KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP 361 (549)
T ss_dssp CCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS-CCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSST
T ss_pred cccccccccccchhhhcccchhhhhhcccceEEEeccC-ccccCCHHHHhcCccccEEEccCCccccccccchhhhhccc
Confidence 12333333332 2333333211 123788888887664444432 356777
Q ss_pred cccceeeccCcCccccCC----CCCCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcc
Q 037573 250 SHQQLTVEQCPGIVAIPE----NDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLT 325 (357)
Q Consensus 250 ~L~~L~l~~c~~l~~l~~----~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~ 325 (357)
+|++|++++| .++.++. ...+++|++|++++ +.++.++.. +..+++|++|++++ +.+..+|... +++|+
T Consensus 362 ~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~-~~~~~~L~~L~Ls~--N~l~~l~~~~--~~~L~ 434 (549)
T 2z81_A 362 SLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISR-NTFHPMPDS-CQWPEKMRFLNLSS--TGIRVVKTCI--PQTLE 434 (549)
T ss_dssp TCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTT-CCCCCCCSC-CCCCTTCCEEECTT--SCCSCCCTTS--CTTCS
T ss_pred cCcEEEccCC-cccccccchhhhhcCCCCCEEECCC-CCCccCChh-hcccccccEEECCC--CCcccccchh--cCCce
Confidence 7888888774 4554432 12356777788877 456665543 56667777777776 4566665433 34555
Q ss_pred eEeccc
Q 037573 326 RLWIRD 331 (357)
Q Consensus 326 ~L~l~~ 331 (357)
+|++++
T Consensus 435 ~L~Ls~ 440 (549)
T 2z81_A 435 VLDVSN 440 (549)
T ss_dssp EEECCS
T ss_pred EEECCC
Confidence 555543
No 47
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.64 E-value=7.6e-15 Score=140.77 Aligned_cols=167 Identities=19% Similarity=0.298 Sum_probs=77.1
Q ss_pred ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccC
Q 037573 119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELH 198 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~ 198 (357)
++.+++|+.|+++++. +..++. +..+++|++|+++++. +..+++ ... +++|+.|++++|. +..++ .+.
T Consensus 173 ~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-~~~------l~~L~~L~l~~n~-l~~~~-~l~ 240 (466)
T 1o6v_A 173 LANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQ-ISDITP-LGI------LTNLDELSLNGNQ-LKDIG-TLA 240 (466)
T ss_dssp GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECCSSC-CCCCGG-GGG------CTTCCEEECCSSC-CCCCG-GGG
T ss_pred hccCCCCCEEECcCCc-CCCChh-hccCCCCCEEEecCCc-cccccc-ccc------cCCCCEEECCCCC-cccch-hhh
Confidence 5666777777777664 444443 5666777777777643 333332 112 4555555555542 33332 244
Q ss_pred CCCCccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceE
Q 037573 199 KLSRLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTIL 277 (357)
Q Consensus 199 ~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L 277 (357)
.+++|+.|++++|. +..++. ..++ +|++|++++|. +..++. +..+++|++|++++| .+..++..+.+++|+.|
T Consensus 241 ~l~~L~~L~l~~n~-l~~~~~~~~l~--~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L 314 (466)
T 1o6v_A 241 SLTNLTDLDLANNQ-ISNLAPLSGLT--KLTELKLGANQ-ISNISP-LAGLTALTNLELNEN-QLEDISPISNLKNLTYL 314 (466)
T ss_dssp GCTTCSEEECCSSC-CCCCGGGTTCT--TCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEE
T ss_pred cCCCCCEEECCCCc-cccchhhhcCC--CCCEEECCCCc-cCcccc-ccCCCccCeEEcCCC-cccCchhhcCCCCCCEE
Confidence 45555555555432 222221 2222 55555554432 333322 444455555555443 23333322223445555
Q ss_pred EecCCCCceecccccccccCCccEEEEec
Q 037573 278 KITDVNIFKSLFQWGLHRLNSLKELIVNG 306 (357)
Q Consensus 278 ~l~~c~~l~~~~~~~l~~l~~L~~L~l~~ 306 (357)
++++ +.++..++ +..+++|++|++++
T Consensus 315 ~L~~-n~l~~~~~--~~~l~~L~~L~l~~ 340 (466)
T 1o6v_A 315 TLYF-NNISDISP--VSSLTKLQRLFFYN 340 (466)
T ss_dssp ECCS-SCCSCCGG--GGGCTTCCEEECCS
T ss_pred ECcC-CcCCCchh--hccCccCCEeECCC
Confidence 5544 23333222 23444444444444
No 48
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=1.5e-15 Score=137.99 Aligned_cols=198 Identities=13% Similarity=0.148 Sum_probs=145.2
Q ss_pred CCCcccEEeeccCcCcccccccc--CCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccc-ccc
Q 037573 121 VLCRLKYLELIDCECLVNLPQAL--HCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLP-HEL 197 (357)
Q Consensus 121 ~l~~L~~L~l~~~~~l~~lp~~~--~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp-~~l 197 (357)
.+++|++|+++++..-+.+|..+ +.+++|++|+++++ .+..+|..+..+... .+++|++|+++++. +..++ ..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~-~~~~L~~L~L~~N~-l~~~~~~~~ 169 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQW-LKPGLKVLSIAQAH-SLNFSCEQV 169 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTT-CCTTCCEEEEESCS-CCCCCTTTC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHh-hcCCCcEEEeeCCC-CccchHHHh
Confidence 58999999999987555688766 88999999999985 566666544330000 02899999999975 55555 788
Q ss_pred CCCCCccEEEecCCCCCcc--cC----CCCCCCCCcceEEeccCCcch---hhHh-hhccCCcccceeeccCcCccccC-
Q 037573 198 HKLSRLQQIEIRNCPSLVS--FP----ERGLPSTNLTAVCVINCEKLE---ALLN-GIHRLTSHQQLTVEQCPGIVAIP- 266 (357)
Q Consensus 198 ~~l~~L~~L~l~~c~~l~~--l~----~~~~~~~~L~~L~l~~c~~l~---~l~~-~~~~l~~L~~L~l~~c~~l~~l~- 266 (357)
+.+++|+.|+++++.-... ++ ...++ +|++|+++++. ++ .++. .+..+++|++|+++++ .+...+
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~--~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~ 245 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPLKFP--TLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHN-SLRDAAG 245 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCT--TCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCC
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhccCC--CCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCC-cCCcccc
Confidence 9999999999998754332 11 13444 99999999865 55 3333 3457899999999995 566543
Q ss_pred CC--CCCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccC
Q 037573 267 EN--DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDF 332 (357)
Q Consensus 267 ~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c 332 (357)
.. ..+++|++|++++ +.++.++.. +. ++|++|++++ +.++.+|. +..+++|++|++++-
T Consensus 246 ~~~~~~l~~L~~L~Ls~-N~l~~ip~~-~~--~~L~~L~Ls~--N~l~~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 246 APSCDWPSQLNSLNLSF-TGLKQVPKG-LP--AKLSVLDLSY--NRLDRNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp CSCCCCCTTCCEEECTT-SCCSSCCSS-CC--SEEEEEECCS--SCCCSCCC-TTTSCEEEEEECTTC
T ss_pred hhhhhhcCCCCEEECCC-CccChhhhh-cc--CCceEEECCC--CCCCCChh-HhhCCCCCEEeccCC
Confidence 22 3368999999999 678877664 33 8999999998 78888876 546777777777653
No 49
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.64 E-value=3.2e-15 Score=145.24 Aligned_cols=149 Identities=18% Similarity=0.194 Sum_probs=116.7
Q ss_pred cccccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCccc---CC--CCCCCCCcceEEeccCCcchhhHhh-hccCC
Q 037573 176 ITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSF---PE--RGLPSTNLTAVCVINCEKLEALLNG-IHRLT 249 (357)
Q Consensus 176 l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l---~~--~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~ 249 (357)
+++|+.|++++|.....+|..++.+++|+.|+++++ .+..+ |. ..++ +|++|+++++.-...+|.. +..++
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~--~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN-QLKELSKIAEMTTQMK--SLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSS-CCCBHHHHHHHHTTCT--TCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred CCcccEEEeECCccChhhhhhhccCCCCCEEEccCC-ccCccccchHHHhhCC--CCCEEECCCCcCCcccccchhccCc
Confidence 788999999997654557888999999999999986 45533 22 4455 9999999986643337764 77889
Q ss_pred cccceeeccCcCccccCCCCCCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCC-CCCCCCcceEe
Q 037573 250 SHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQE-EIGSTSLTRLW 328 (357)
Q Consensus 250 ~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~-~~~~~sL~~L~ 328 (357)
+|++|++++|.-...+|. ..+++|+.|++++ +.++.++.+ +..+++|++|++++ +.+..+|.. +..+++|++|+
T Consensus 400 ~L~~L~Ls~N~l~~~~~~-~l~~~L~~L~Ls~-N~l~~ip~~-~~~l~~L~~L~L~~--N~l~~l~~~~~~~l~~L~~L~ 474 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFR-CLPPRIKVLDLHS-NKIKSIPKQ-VVKLEALQELNVAS--NQLKSVPDGIFDRLTSLQKIW 474 (520)
T ss_dssp TCCEEECCSSCCCGGGGG-SCCTTCCEEECCS-SCCCCCCGG-GGGCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCEEECcCCCCCcchhh-hhcccCCEEECCC-Ccccccchh-hhcCCCCCEEECCC--CcCCccCHHHhccCCcccEEE
Confidence 999999999643344443 3347999999999 678878765 56999999999998 588899986 55688999999
Q ss_pred cccC
Q 037573 329 IRDF 332 (357)
Q Consensus 329 l~~c 332 (357)
+++.
T Consensus 475 l~~N 478 (520)
T 2z7x_B 475 LHTN 478 (520)
T ss_dssp CCSS
T ss_pred CcCC
Confidence 9864
No 50
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.63 E-value=1.4e-14 Score=142.13 Aligned_cols=127 Identities=13% Similarity=0.134 Sum_probs=77.1
Q ss_pred CCCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcch---hhHhhhccCCcccceeeccCcCccc-cCCC--CCC
Q 037573 198 HKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLE---ALLNGIHRLTSHQQLTVEQCPGIVA-IPEN--DYP 271 (357)
Q Consensus 198 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~---~l~~~~~~l~~L~~L~l~~c~~l~~-l~~~--~~~ 271 (357)
..+++|++|+++++.-...+|.....+++|++|+++++. ++ .+|..+..+++|++|+++++ .+.. +|.. ..+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~l 427 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCAWA 427 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTS-CCBSCCSSCCCCCC
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCC-cCCCccChhhhcCc
Confidence 456677777777653322233322223478888887754 44 34456777888888888774 4444 5544 225
Q ss_pred CCcceEEecCCCCceeccccccccc-CCccEEEEeccCCCCCcCCCCCCCCCCcceEecccC
Q 037573 272 TNLTILKITDVNIFKSLFQWGLHRL-NSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDF 332 (357)
Q Consensus 272 ~~L~~L~l~~c~~l~~~~~~~l~~l-~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c 332 (357)
++|+.|++++ +.++...+ ..+ ++|++|++++ +.++.+|...+.+++|++|+++++
T Consensus 428 ~~L~~L~l~~-n~l~~~~~---~~l~~~L~~L~L~~--N~l~~ip~~~~~l~~L~~L~L~~N 483 (562)
T 3a79_B 428 ESILVLNLSS-NMLTGSVF---RCLPPKVKVLDLHN--NRIMSIPKDVTHLQALQELNVASN 483 (562)
T ss_dssp TTCCEEECCS-SCCCGGGG---SSCCTTCSEEECCS--SCCCCCCTTTTSSCCCSEEECCSS
T ss_pred ccCCEEECCC-CCCCcchh---hhhcCcCCEEECCC--CcCcccChhhcCCCCCCEEECCCC
Confidence 6777777777 44442221 222 5777777776 477777776666777777777653
No 51
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=3.1e-15 Score=144.25 Aligned_cols=196 Identities=11% Similarity=0.071 Sum_probs=153.1
Q ss_pred ccccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccc
Q 037573 117 SVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHE 196 (357)
Q Consensus 117 ~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~ 196 (357)
..++.+++|++|+++++. +...+. ++.+++|++|+++++ .+..+|. .++|+.|++++|. +..+|.
T Consensus 52 ~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~----------~~~L~~L~L~~N~-l~~~~~- 116 (487)
T 3oja_A 52 ADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN-YVQELLV----------GPSIETLHAANNN-ISRVSC- 116 (487)
T ss_dssp GGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSS-EEEEEEE----------CTTCCEEECCSSC-CCCEEE-
T ss_pred HHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCC-cCCCCCC----------CCCcCEEECcCCc-CCCCCc-
Confidence 347788999999999986 454444 889999999999985 5666664 6899999999964 666654
Q ss_pred cCCCCCccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchhhHhhhc-cCCcccceeeccCcCccccCCCCCCCCc
Q 037573 197 LHKLSRLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEALLNGIH-RLTSHQQLTVEQCPGIVAIPENDYPTNL 274 (357)
Q Consensus 197 l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~-~l~~L~~L~l~~c~~l~~l~~~~~~~~L 274 (357)
..+++|+.|+++++ .+..++. ....+++|++|+++++.--...|..+. .+++|++|+++++ .+..++....+++|
T Consensus 117 -~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~L 193 (487)
T 3oja_A 117 -SRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKL 193 (487)
T ss_dssp -CCCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECCCCCTTC
T ss_pred -cccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC-ccccccccccCCCC
Confidence 34789999999986 4554433 222234999999998654344555664 7899999999995 67777776678999
Q ss_pred ceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCcc
Q 037573 275 TILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQN 334 (357)
Q Consensus 275 ~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~~ 334 (357)
+.|++++ +.++.+++. +..+++|+.|++++ +.+..+|..+..+++|+.|++++++-
T Consensus 194 ~~L~Ls~-N~l~~~~~~-~~~l~~L~~L~Ls~--N~l~~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 194 KTLDLSS-NKLAFMGPE-FQSAAGVTWISLRN--NKLVLIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CEEECCS-SCCCEECGG-GGGGTTCSEEECTT--SCCCEECTTCCCCTTCCEEECTTCCB
T ss_pred CEEECCC-CCCCCCCHh-HcCCCCccEEEecC--CcCcccchhhccCCCCCEEEcCCCCC
Confidence 9999999 778877765 78999999999998 78889998887889999999987643
No 52
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.63 E-value=3.2e-15 Score=136.14 Aligned_cols=193 Identities=12% Similarity=0.109 Sum_probs=150.1
Q ss_pred cccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccccccc
Q 037573 118 VIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHEL 197 (357)
Q Consensus 118 ~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l 197 (357)
.+..+++|++|+++++. +...+. +..+++|++|+++++ .+..++. .++|+.|+++++ .+..++..
T Consensus 53 ~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~~----------~~~L~~L~l~~n-~l~~~~~~- 117 (317)
T 3o53_A 53 DLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN-YVQELLV----------GPSIETLHAANN-NISRVSCS- 117 (317)
T ss_dssp HHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCSS-EEEEEEE----------CTTCCEEECCSS-CCSEEEEC-
T ss_pred HhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcCC-ccccccC----------CCCcCEEECCCC-ccCCcCcc-
Confidence 46778999999999886 455554 888999999999985 5666653 689999999986 46666543
Q ss_pred CCCCCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhh-Hhhh-ccCCcccceeeccCcCccccCCCCCCCCc
Q 037573 198 HKLSRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEAL-LNGI-HRLTSHQQLTVEQCPGIVAIPENDYPTNL 274 (357)
Q Consensus 198 ~~l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l-~~~~-~~l~~L~~L~l~~c~~l~~l~~~~~~~~L 274 (357)
.+++|+.|+++++ .+..++...+ .+++|++|+++++. ++.+ +..+ ..+++|++|+++++ .++.++....+++|
T Consensus 118 -~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~l~~L 193 (317)
T 3o53_A 118 -RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKL 193 (317)
T ss_dssp -CCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTS-CCCEEECCCCCTTC
T ss_pred -ccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCC-cCcccccccccccC
Confidence 4789999999985 5555544221 23499999998865 4443 4444 47899999999995 68778776668999
Q ss_pred ceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCc
Q 037573 275 TILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQ 333 (357)
Q Consensus 275 ~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~ 333 (357)
++|++++ +.++.+++. +..+++|++|++++ +.+..+|..+..+++|++|++++++
T Consensus 194 ~~L~Ls~-N~l~~l~~~-~~~l~~L~~L~L~~--N~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 194 KTLDLSS-NKLAFMGPE-FQSAAGVTWISLRN--NKLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp CEEECCS-SCCCEECGG-GGGGTTCSEEECTT--SCCCEECTTCCCCTTCCEEECTTCC
T ss_pred CEEECCC-CcCCcchhh-hcccCcccEEECcC--CcccchhhHhhcCCCCCEEEccCCC
Confidence 9999999 678877665 78899999999998 6888999888788999999998653
No 53
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.63 E-value=9e-15 Score=150.27 Aligned_cols=275 Identities=11% Similarity=0.044 Sum_probs=176.8
Q ss_pred CCcccceEEeeccCCCCCC--CCccccccchhHHHhhhccccccc-chhhhhh-hccCCccccccccccccCCcccccCC
Q 037573 47 PSTSKAWKLIIRTCCSNFN--TPSLMFNASMRYKLKDSTTRLQEI-DMEKEQL-ILKSNSGERSKKVGQRLSTTSVIQVL 122 (357)
Q Consensus 47 ~~~~~l~~l~l~~c~~~~~--~~~l~~l~~L~~l~~~~~~~l~~i-~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (357)
..+++++.|++++|..... ...+..+++|+.+.+.++. +..+ +..+..+ .+..+....+.. ....+....++.+
T Consensus 45 ~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~~~L 122 (844)
T 3j0a_A 45 PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGL-SDAVLKDGYFRNL 122 (844)
T ss_dssp SSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSSCSCSSCCCEECTTCCC-SSCCSTTCCCSSC
T ss_pred cccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHccCCcccCEeeCcCCCC-CcccccCcccccc
Confidence 5667899999999853333 3457888999988887764 3333 3333322 122222111110 1111222347889
Q ss_pred CcccEEeeccCcCcccc-ccccCCCCCcCEEeecCCCcchhcccccc-----ccccccc---------------cc----
Q 037573 123 CRLKYLELIDCECLVNL-PQALHCLSSLTEITVAGCTKLVSFLELSS-----VAEMFAI---------------IT---- 177 (357)
Q Consensus 123 ~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~i~~c~~l~~~~~~~~-----~L~~L~~---------------l~---- 177 (357)
++|++|+++++...... +..++.+++|++|+++++.--...+..+. +|+.|.+ ++
T Consensus 123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 202 (844)
T 3j0a_A 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202 (844)
T ss_dssp SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTT
T ss_pred CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccc
Confidence 99999999998643332 34688999999999998532222222211 2222222 22
Q ss_pred --cccEEEeeCCCCCcccccccC------------------------------------C--CCCccEEEecCCCCCccc
Q 037573 178 --SFENIMVNGCDNLKCLPHELH------------------------------------K--LSRLQQIEIRNCPSLVSF 217 (357)
Q Consensus 178 --~L~~L~l~~c~~l~~lp~~l~------------------------------------~--l~~L~~L~l~~c~~l~~l 217 (357)
+|+.|+++++.....+|..+. . .++|+.|+++++ .+..+
T Consensus 203 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n-~l~~~ 281 (844)
T 3j0a_A 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG-FVFSL 281 (844)
T ss_dssp TCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTC-CCCEE
T ss_pred cCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCC-ccccc
Confidence 288999988742222221111 1 267999999985 44444
Q ss_pred CCCC-CCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--CCCCCcceEEecCCCCceeccccccc
Q 037573 218 PERG-LPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKITDVNIFKSLFQWGLH 294 (357)
Q Consensus 218 ~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~~~~~~~l~ 294 (357)
+... ..+++|+.|+++++.--...|..+..+++|++|+++++ .+..++.. ..+++|+.|++++ +.++.+++..+.
T Consensus 282 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~ 359 (844)
T 3j0a_A 282 NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQK-NHIAIIQDQTFK 359 (844)
T ss_dssp CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESC-CCSCCCSCSCSSCTTCCEEECCS-CCCCCCCSSCSC
T ss_pred ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCC-CCCccCHHHhcCCCCCCEEECCC-CCCCccChhhhc
Confidence 4322 22459999999986643344567899999999999995 56655333 3478999999999 678877776688
Q ss_pred ccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccC
Q 037573 295 RLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDF 332 (357)
Q Consensus 295 ~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c 332 (357)
.+++|++|++++ +.+..++. +++|+.|+++++
T Consensus 360 ~l~~L~~L~Ls~--N~l~~i~~----~~~L~~L~l~~N 391 (844)
T 3j0a_A 360 FLEKLQTLDLRD--NALTTIHF----IPSIPDIFLSGN 391 (844)
T ss_dssp SCCCCCEEEEET--CCSCCCSS----CCSCSEEEEESC
T ss_pred CCCCCCEEECCC--CCCCcccC----CCCcchhccCCC
Confidence 899999999998 67777664 678999988765
No 54
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.63 E-value=2e-14 Score=144.24 Aligned_cols=198 Identities=16% Similarity=0.126 Sum_probs=134.5
Q ss_pred cccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccc-cccccccccccccccEEEeeCCCCCcccccccCCCCC
Q 037573 124 RLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLE-LSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSR 202 (357)
Q Consensus 124 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~-~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~ 202 (357)
+|+.|+++++......|..+..+++|++|+++++.-...+|. .+.. +++|+.|++++|......+..+..+++
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~------l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 455 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG------LENIFEIYLSYNKYLQLTRNSFALVPS 455 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTT------CTTCCEEECCSCSEEECCTTTTTTCTT
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccC------cccccEEecCCCCcceeChhhhhcCcc
Confidence 455555555443222345566777777777777543333442 2223 778888888876533333456667888
Q ss_pred ccEEEecCCCC--CcccCCCCCCCCCcceEEeccCCcchhhHh-hhccCCcccceeeccCcCccccCCC----------C
Q 037573 203 LQQIEIRNCPS--LVSFPERGLPSTNLTAVCVINCEKLEALLN-GIHRLTSHQQLTVEQCPGIVAIPEN----------D 269 (357)
Q Consensus 203 L~~L~l~~c~~--l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~----------~ 269 (357)
|+.|+++++.. +..+|.....+++|++|+++++. ++.++. .+..+++|++|+++++ .++.++.. .
T Consensus 456 L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~ 533 (680)
T 1ziw_A 456 LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLK 533 (680)
T ss_dssp CCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTT
T ss_pred cccchhccccccccccCCcccccCCCCCEEECCCCC-CCcCChhhhccccccCEEeCCCC-CccccchhhccCCcchhhc
Confidence 88888887532 23344333334589999998855 566654 5788999999999984 56654321 2
Q ss_pred CCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCC-CCCCCcceEecccC
Q 037573 270 YPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEE-IGSTSLTRLWIRDF 332 (357)
Q Consensus 270 ~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~-~~~~sL~~L~l~~c 332 (357)
.+++|+.|++++ +.++.++...+..+++|++|++++ +.+..+|... ..+++|++|+++++
T Consensus 534 ~l~~L~~L~L~~-N~l~~i~~~~~~~l~~L~~L~Ls~--N~l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 534 GLSHLHILNLES-NGFDEIPVEVFKDLFELKIIDLGL--NNLNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp TCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCCCCCEEECCC-CCCCCCCHHHcccccCcceeECCC--CCCCcCCHhHhCCCCCCCEEECCCC
Confidence 368999999998 678888776688999999999987 7899998765 36789999999864
No 55
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.62 E-value=4.6e-15 Score=134.56 Aligned_cols=186 Identities=15% Similarity=0.249 Sum_probs=85.4
Q ss_pred CCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCC
Q 037573 122 LCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLS 201 (357)
Q Consensus 122 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~ 201 (357)
+++|++|+++++. +..++ .+..+++|++|+++++ .+..++. +.. +++|+.|+++++. +..+| .+..++
T Consensus 40 l~~L~~L~l~~~~-i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~------l~~L~~L~L~~n~-l~~~~-~~~~l~ 107 (308)
T 1h6u_A 40 LDGITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDN-QITDLAP-LKN------LTKITELELSGNP-LKNVS-AIAGLQ 107 (308)
T ss_dssp HHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTT------CCSCCEEECCSCC-CSCCG-GGTTCT
T ss_pred cCCcCEEEeeCCC-ccCch-hhhccCCCCEEEccCC-cCCCChh-Hcc------CCCCCEEEccCCc-CCCch-hhcCCC
Confidence 4555555555542 34444 2445555555555553 3333333 222 5555555555532 44443 344555
Q ss_pred CccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEEec
Q 037573 202 RLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKIT 280 (357)
Q Consensus 202 ~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~ 280 (357)
+|+.|+++++ .+..++. ..++ +|++|+++++. ++.++. +..+++|++|++++| .+..++....+++|+.|+++
T Consensus 108 ~L~~L~l~~n-~l~~~~~l~~l~--~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 108 SIKTLDLTST-QITDVTPLAGLS--NLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNA-QVSDLTPLANLSKLTTLKAD 181 (308)
T ss_dssp TCCEEECTTS-CCCCCGGGTTCT--TCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECC
T ss_pred CCCEEECCCC-CCCCchhhcCCC--CCCEEECCCCc-cCcCcc-ccCCCCccEEEccCC-cCCCChhhcCCCCCCEEECC
Confidence 5555555543 2333332 2222 55555555432 333332 445555555555553 34433332234455555555
Q ss_pred CCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEeccc
Q 037573 281 DVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRD 331 (357)
Q Consensus 281 ~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~ 331 (357)
+ +.++.+++ +..+++|++|++++ +.+..++. +..+++|++|++++
T Consensus 182 ~-n~l~~~~~--l~~l~~L~~L~L~~--N~l~~~~~-l~~l~~L~~L~l~~ 226 (308)
T 1h6u_A 182 D-NKISDISP--LASLPNLIEVHLKN--NQISDVSP-LANTSNLFIVTLTN 226 (308)
T ss_dssp S-SCCCCCGG--GGGCTTCCEEECTT--SCCCBCGG-GTTCTTCCEEEEEE
T ss_pred C-CccCcChh--hcCCCCCCEEEccC--CccCcccc-ccCCCCCCEEEccC
Confidence 5 33443332 34555555555554 34444442 22444555555544
No 56
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.62 E-value=2.7e-15 Score=130.95 Aligned_cols=178 Identities=17% Similarity=0.181 Sum_probs=140.2
Q ss_pred cccCCCcccEEeeccCcCcccccc-ccCCCCCcCEEeecCCCcchhccccc-cccccccccccccEEEeeCCCCCccccc
Q 037573 118 VIQVLCRLKYLELIDCECLVNLPQ-ALHCLSSLTEITVAGCTKLVSFLELS-SVAEMFAIITSFENIMVNGCDNLKCLPH 195 (357)
Q Consensus 118 ~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~-~~L~~L~~l~~L~~L~l~~c~~l~~lp~ 195 (357)
.++.+++|++|+++++..++.++. .+..+++|++|++++|..+..++... .. +++|+.|+++++. +..+|.
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~------l~~L~~L~l~~n~-l~~lp~ 122 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKE------LPLLKFLGIFNTG-LKMFPD 122 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEEC------CTTCCEEEEEEEC-CCSCCC
T ss_pred HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCC------CCCCCEEeCCCCC-Cccccc
Confidence 367789999999999865777765 68899999999999877888887643 35 8899999999964 677887
Q ss_pred ccCCCCCcc---EEEecCCCCCcccCCCCC-CCCCcc-eEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCC
Q 037573 196 ELHKLSRLQ---QIEIRNCPSLVSFPERGL-PSTNLT-AVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDY 270 (357)
Q Consensus 196 ~l~~l~~L~---~L~l~~c~~l~~l~~~~~-~~~~L~-~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 270 (357)
+..+++|+ .|+++++..+..++...+ .+++|+ +|+++++. ++.+|......++|++|+++++..++.++...+
T Consensus 123 -~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~ 200 (239)
T 2xwt_C 123 -LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAF 200 (239)
T ss_dssp -CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTTCEEEEEECTTCTTCCEECTTTT
T ss_pred -cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCCCCCCEEEcCCCCCcccCCHHHh
Confidence 88888888 999999768888876433 234899 99998854 667776544458999999999656888876533
Q ss_pred --C-CCcceEEecCCCCceecccccccccCCccEEEEeccCC
Q 037573 271 --P-TNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFP 309 (357)
Q Consensus 271 --~-~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~ 309 (357)
+ ++|+.|++++ +.++.++.. .+++|+.|++.+ +.
T Consensus 201 ~~l~~~L~~L~l~~-N~l~~l~~~---~~~~L~~L~l~~-~~ 237 (239)
T 2xwt_C 201 GGVYSGPSLLDVSQ-TSVTALPSK---GLEHLKELIARN-TW 237 (239)
T ss_dssp TTCSBCCSEEECTT-CCCCCCCCT---TCTTCSEEECTT-C-
T ss_pred hccccCCcEEECCC-CccccCChh---HhccCceeeccC-cc
Confidence 5 8999999999 778877654 688999999987 54
No 57
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.61 E-value=2.2e-14 Score=131.20 Aligned_cols=204 Identities=16% Similarity=0.182 Sum_probs=154.5
Q ss_pred cccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccc-cc
Q 037573 118 VIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLP-HE 196 (357)
Q Consensus 118 ~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp-~~ 196 (357)
.++.+++|++|+++++..-...|..++.+++|++|+++++ .+..+|... .++|+.|+++++. +..++ ..
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~--------~~~L~~L~l~~n~-l~~~~~~~ 140 (330)
T 1xku_A 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKM--------PKTLQELRVHENE-ITKVRKSV 140 (330)
T ss_dssp TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSC--------CTTCCEEECCSSC-CCBBCHHH
T ss_pred hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhh--------cccccEEECCCCc-ccccCHhH
Confidence 4788999999999988643334778889999999999984 577777654 5789999999864 55554 45
Q ss_pred cCCCCCccEEEecCCCCCc--ccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--CCCC
Q 037573 197 LHKLSRLQQIEIRNCPSLV--SFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPT 272 (357)
Q Consensus 197 l~~l~~L~~L~l~~c~~l~--~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~ 272 (357)
+..+++|+.|+++++..-. ..+.....+++|++|+++++. ++.+|..+. ++|++|+++++ .++.++.. ..++
T Consensus 141 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~ 216 (330)
T 1xku_A 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLP--PSLTELHLDGN-KITKVDAASLKGLN 216 (330)
T ss_dssp HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCC--TTCSEEECTTS-CCCEECTGGGTTCT
T ss_pred hcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcccc--ccCCEEECCCC-cCCccCHHHhcCCC
Confidence 7889999999999864321 122211123499999998854 677766543 88999999985 56666433 3468
Q ss_pred CcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCccccccc
Q 037573 273 NLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYIS 339 (357)
Q Consensus 273 ~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~~L~~l~ 339 (357)
+|++|++++ +.++.+++..+..+++|++|++++ +.+..+|..+..+++|++|+++++ .++.++
T Consensus 217 ~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~--N~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~ 279 (330)
T 1xku_A 217 NLAKLGLSF-NSISAVDNGSLANTPHLRELHLNN--NKLVKVPGGLADHKYIQVVYLHNN-NISAIG 279 (330)
T ss_dssp TCCEEECCS-SCCCEECTTTGGGSTTCCEEECCS--SCCSSCCTTTTTCSSCCEEECCSS-CCCCCC
T ss_pred CCCEEECCC-CcCceeChhhccCCCCCCEEECCC--CcCccCChhhccCCCcCEEECCCC-cCCccC
Confidence 999999999 667777665688899999999998 588899988878899999999876 466654
No 58
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.61 E-value=1.4e-14 Score=129.04 Aligned_cols=200 Identities=19% Similarity=0.259 Sum_probs=145.8
Q ss_pred CcccEEeeccCcCcccccc-ccCCCCCcCEEeecCCCcchhcccc-ccccccccccccccEEEeeCCCCCcccc-cccCC
Q 037573 123 CRLKYLELIDCECLVNLPQ-ALHCLSSLTEITVAGCTKLVSFLEL-SSVAEMFAIITSFENIMVNGCDNLKCLP-HELHK 199 (357)
Q Consensus 123 ~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~-~~~L~~L~~l~~L~~L~l~~c~~l~~lp-~~l~~ 199 (357)
++|++|+++++. +..++. .+..+++|++|+++++ .+..++.. +.. +++|+.|+++++. +..++ ..+..
T Consensus 28 ~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~------l~~L~~L~L~~n~-l~~~~~~~~~~ 98 (276)
T 2z62_A 28 FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQS------LSHLSTLILTGNP-IQSLALGAFSG 98 (276)
T ss_dssp TTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTT------CTTCCEEECTTCC-CCEECTTTTTT
T ss_pred CCccEEECCCCc-ccccCHhHhccccCCcEEECCCC-cCCccCHHHccC------CcCCCEEECCCCc-cCccChhhhcC
Confidence 579999999875 566554 6888999999999986 56666553 335 8899999999864 55554 56888
Q ss_pred CCCccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchh--hHhhhccCCcccceeeccCcCccccCCCCC--CCCc
Q 037573 200 LSRLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEA--LLNGIHRLTSHQQLTVEQCPGIVAIPENDY--PTNL 274 (357)
Q Consensus 200 l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~--l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L 274 (357)
+++|+.|+++++ .+..++. ....+++|++|+++++. ++. +|..+..+++|++|+++++ .++.++...+ +.+|
T Consensus 99 l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 175 (276)
T 2z62_A 99 LSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQM 175 (276)
T ss_dssp CTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTC
T ss_pred CccccEEECCCC-CccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhhhc
Confidence 999999999875 4555544 22223489999998865 444 6778899999999999885 5666654322 3344
Q ss_pred c----eEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCC-CCCCCcceEecc------cCcccccc
Q 037573 275 T----ILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEE-IGSTSLTRLWIR------DFQNLEYI 338 (357)
Q Consensus 275 ~----~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~-~~~~sL~~L~l~------~c~~L~~l 338 (357)
+ +|++++ +.++.+++. .....+|++|++++ +.+..+|... ...++|++|+++ +|+.++.+
T Consensus 176 ~~l~l~L~ls~-n~l~~~~~~-~~~~~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l 246 (276)
T 2z62_A 176 PLLNLSLDLSL-NPMNFIQPG-AFKEIRLKELALDT--NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 246 (276)
T ss_dssp TTCCEEEECCS-SCCCEECTT-SSCSCCEEEEECCS--SCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHH
T ss_pred cccceeeecCC-CcccccCcc-ccCCCcccEEECCC--CceeecCHhHhcccccccEEEccCCcccccCCchHHH
Confidence 4 889988 677777655 33445899999998 5688887654 458899999998 57777655
No 59
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.61 E-value=1.2e-14 Score=142.75 Aligned_cols=108 Identities=14% Similarity=0.094 Sum_probs=72.1
Q ss_pred CCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCC----CCCCCCcceEEecCCCCcee-cccccccccCCc
Q 037573 225 TNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPE----NDYPTNLTILKITDVNIFKS-LFQWGLHRLNSL 299 (357)
Q Consensus 225 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~----~~~~~~L~~L~l~~c~~l~~-~~~~~l~~l~~L 299 (357)
++|++|+++++.--..+|..+..+++|++|+++++ .++.++. .+.+++|+.|++++ +.++. ++...+..+++|
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSL-NSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTT-SCCBSCCSSCCCCCCTTC
T ss_pred CCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCC-CcCCCccChhhhcCcccC
Confidence 37888888776544446677788888888888874 5665432 13467888888888 55664 665556778888
Q ss_pred cEEEEeccCCCCCcCCCCCCCCCCcceEecccCcccccc
Q 037573 300 KELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYI 338 (357)
Q Consensus 300 ~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~~L~~l 338 (357)
++|++++ |.--..+|..+ +++|++|+++++ .++.+
T Consensus 431 ~~L~l~~-n~l~~~~~~~l--~~~L~~L~L~~N-~l~~i 465 (562)
T 3a79_B 431 LVLNLSS-NMLTGSVFRCL--PPKVKVLDLHNN-RIMSI 465 (562)
T ss_dssp CEEECCS-SCCCGGGGSSC--CTTCSEEECCSS-CCCCC
T ss_pred CEEECCC-CCCCcchhhhh--cCcCCEEECCCC-cCccc
Confidence 8888887 44334445433 368888888765 34443
No 60
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.61 E-value=5.6e-15 Score=144.95 Aligned_cols=198 Identities=19% Similarity=0.159 Sum_probs=148.3
Q ss_pred cCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhc---cccccccccccccccccEEEeeCCCCCcccccc
Q 037573 120 QVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSF---LELSSVAEMFAIITSFENIMVNGCDNLKCLPHE 196 (357)
Q Consensus 120 ~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~---~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~ 196 (357)
..+++|+.|.++++.....++. ..+++|++|+++++. +... +..... +++|+.|++++|. +..+|..
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~-l~~~~~~~~~~~~------~~~L~~L~l~~n~-l~~~~~~ 391 (570)
T 2z63_A 322 LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNG-LSFKGCCSQSDFG------TTSLKYLDLSFNG-VITMSSN 391 (570)
T ss_dssp CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSC-CBEEEEEEHHHHT------CSCCCEEECCSCS-EEEEEEE
T ss_pred ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCc-cCccccccccccc------cCccCEEECCCCc-ccccccc
Confidence 4678899999998875444443 678999999999853 4433 333334 8899999999964 6677777
Q ss_pred cCCCCCccEEEecCCCCCcccCC--CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCc-cccCCC-CCCC
Q 037573 197 LHKLSRLQQIEIRNCPSLVSFPE--RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGI-VAIPEN-DYPT 272 (357)
Q Consensus 197 l~~l~~L~~L~l~~c~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l-~~l~~~-~~~~ 272 (357)
+..+++|+.|+++++. +...+. ....+++|++|++++|......|..+..+++|++|++++|.-. ..+|.. ..++
T Consensus 392 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~ 470 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470 (570)
T ss_dssp EETCTTCCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred ccccCCCCEEEccCCc-cccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc
Confidence 8899999999999864 433322 1122349999999998765666778899999999999997533 246644 4478
Q ss_pred CcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCC-CCCCCCcceEeccc
Q 037573 273 NLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQE-EIGSTSLTRLWIRD 331 (357)
Q Consensus 273 ~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~-~~~~~sL~~L~l~~ 331 (357)
+|++|++++ +.++.+.+..+..+++|++|++++ +.+..++.. +..+++|++|++++
T Consensus 471 ~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 471 NLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMAS--NQLKSVPDGIFDRLTSLQKIWLHT 527 (570)
T ss_dssp TCCEEECTT-SCCCEECTTTTTTCTTCCEEECCS--SCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEECCC-CccccCChhhhhcccCCCEEeCCC--CcCCCCCHHHhhcccCCcEEEecC
Confidence 999999999 567766555688999999999998 477777643 45688999999986
No 61
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.61 E-value=3.3e-14 Score=126.37 Aligned_cols=149 Identities=20% Similarity=0.300 Sum_probs=66.9
Q ss_pred cccccEEEeeCCCCCccccccc-CCCCCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhH-hhhccCCccc
Q 037573 176 ITSFENIMVNGCDNLKCLPHEL-HKLSRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALL-NGIHRLTSHQ 252 (357)
Q Consensus 176 l~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~ 252 (357)
+++|++|+++++ .+..+|..+ ..+++|+.|+++++ .+..++...+ .+++|++|+++++. ++.++ ..+..+++|+
T Consensus 60 l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~ 136 (270)
T 2o6q_A 60 LTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLT 136 (270)
T ss_dssp CTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred CCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCC
Confidence 455555555543 234444332 34555555555542 3334433211 12255555554432 33332 2344555555
Q ss_pred ceeeccCcCccccCCC--CCCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCC-CCCCCCcceEec
Q 037573 253 QLTVEQCPGIVAIPEN--DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQE-EIGSTSLTRLWI 329 (357)
Q Consensus 253 ~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~-~~~~~sL~~L~l 329 (357)
+|+++++ .+..++.. ..+++|++|++++ +.++.+++..+..+++|++|++++ +.+..+|.. +..+++|++|++
T Consensus 137 ~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~L~l 212 (270)
T 2o6q_A 137 YLSLGYN-ELQSLPKGVFDKLTSLKELRLYN-NQLKRVPEGAFDKLTELKTLKLDN--NQLKRVPEGAFDSLEKLKMLQL 212 (270)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCS--SCCSCCCTTTTTTCTTCCEEEC
T ss_pred EEECCCC-cCCccCHhHccCCcccceeEecC-CcCcEeChhHhccCCCcCEEECCC--CcCCcCCHHHhccccCCCEEEe
Confidence 5555552 34444432 1244555555555 344444443344555555555554 344444433 223445555555
Q ss_pred cc
Q 037573 330 RD 331 (357)
Q Consensus 330 ~~ 331 (357)
.+
T Consensus 213 ~~ 214 (270)
T 2o6q_A 213 QE 214 (270)
T ss_dssp CS
T ss_pred cC
Confidence 43
No 62
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.60 E-value=1.5e-14 Score=133.49 Aligned_cols=198 Identities=14% Similarity=0.202 Sum_probs=87.2
Q ss_pred ccCCCcccEEeeccCcCcccccc-ccCCCCCcCEEeecCCCcchhccccc-cccccccccccccEEEeeCCCCCccccc-
Q 037573 119 IQVLCRLKYLELIDCECLVNLPQ-ALHCLSSLTEITVAGCTKLVSFLELS-SVAEMFAIITSFENIMVNGCDNLKCLPH- 195 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~-~~L~~L~~l~~L~~L~l~~c~~l~~lp~- 195 (357)
|..+++|++|+++++...+.+|. .+..+++|.++.+.++..+..+++.. .. +++|+.|+++++ .+..+|.
T Consensus 50 f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~------l~~L~~L~l~~n-~l~~~~~~ 122 (350)
T 4ay9_X 50 FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQN------LPNLQYLLISNT-GIKHLPDV 122 (350)
T ss_dssp STTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCC------CTTCCEEEEEEE-CCSSCCCC
T ss_pred HcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhh------cccccccccccc-ccccCCch
Confidence 34444444455444443333332 23344444444333334444443322 12 445555555543 2333332
Q ss_pred ccCCCCCccEEEecCCCCCcccCCCCCCC--CCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCC--CC
Q 037573 196 ELHKLSRLQQIEIRNCPSLVSFPERGLPS--TNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEND--YP 271 (357)
Q Consensus 196 ~l~~l~~L~~L~l~~c~~l~~l~~~~~~~--~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~ 271 (357)
......++..+++.++..+..++...+.. ..++.|++++ +.++.++.......+|+++++.+++.++.+|... .+
T Consensus 123 ~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l 201 (350)
T 4ay9_X 123 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGA 201 (350)
T ss_dssp TTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTE
T ss_pred hhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChhhccccchhHHhhccCCcccCCCHHHhccC
Confidence 12223334444444444444444322110 1344555544 2344454444444455555555555555555432 24
Q ss_pred CCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecc
Q 037573 272 TNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIR 330 (357)
Q Consensus 272 ~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~ 330 (357)
++|+.|++++ +.++.++.. .+.+|++|.+.+ +++++.+|.- ..+++|+.+++.
T Consensus 202 ~~L~~LdLs~-N~l~~lp~~---~~~~L~~L~~l~-~~~l~~lP~l-~~l~~L~~l~l~ 254 (350)
T 4ay9_X 202 SGPVILDISR-TRIHSLPSY---GLENLKKLRARS-TYNLKKLPTL-EKLVALMEASLT 254 (350)
T ss_dssp ECCSEEECTT-SCCCCCCSS---SCTTCCEEECTT-CTTCCCCCCT-TTCCSCCEEECS
T ss_pred cccchhhcCC-CCcCccChh---hhccchHhhhcc-CCCcCcCCCc-hhCcChhhCcCC
Confidence 4555555555 445544432 244455555555 5555555532 234555555543
No 63
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.60 E-value=4.8e-14 Score=134.71 Aligned_cols=177 Identities=25% Similarity=0.265 Sum_probs=93.7
Q ss_pred CcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCC
Q 037573 123 CRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSR 202 (357)
Q Consensus 123 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~ 202 (357)
.+|++|+++++. +..+| .++.+++|++|+++++ .+..+|.. .++|+.|++++| .+..+|. ++.+++
T Consensus 173 ~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~~---------~~~L~~L~l~~n-~l~~lp~-~~~l~~ 238 (454)
T 1jl5_A 173 PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNN-SLKKLPDL---------PLSLESIVAGNN-ILEELPE-LQNLPF 238 (454)
T ss_dssp TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSS-CCSSCCCC---------CTTCCEEECCSS-CCSSCCC-CTTCTT
T ss_pred ccccEEECcCCc-CCcCc-cccCCCCCCEEECCCC-cCCcCCCC---------cCcccEEECcCC-cCCcccc-cCCCCC
Confidence 366666666653 44455 3666666666666664 34444432 346666666665 3445653 666666
Q ss_pred ccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--------------
Q 037573 203 LQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN-------------- 268 (357)
Q Consensus 203 L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-------------- 268 (357)
|+.|+++++ .+..+|. .. ++|++|+++++. ++.+|.. +++|++|+++++ .+..++..
T Consensus 239 L~~L~l~~N-~l~~l~~-~~--~~L~~L~l~~N~-l~~l~~~---~~~L~~L~ls~N-~l~~l~~~~~~L~~L~l~~N~l 309 (454)
T 1jl5_A 239 LTTIYADNN-LLKTLPD-LP--PSLEALNVRDNY-LTDLPEL---PQSLTFLDVSEN-IFSGLSELPPNLYYLNASSNEI 309 (454)
T ss_dssp CCEEECCSS-CCSSCCS-CC--TTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSEESCCCTTCCEEECCSSCC
T ss_pred CCEEECCCC-cCCcccc-cc--cccCEEECCCCc-ccccCcc---cCcCCEEECcCC-ccCcccCcCCcCCEEECcCCcC
Confidence 666666653 4444443 12 256666665533 3444321 244555555442 23333210
Q ss_pred ----CCCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccC
Q 037573 269 ----DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDF 332 (357)
Q Consensus 269 ----~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c 332 (357)
..+++|+.|++++ +.++.++. .+++|++|++++ +.+..+|. .+++|++|+++++
T Consensus 310 ~~i~~~~~~L~~L~Ls~-N~l~~lp~----~~~~L~~L~L~~--N~l~~lp~---~l~~L~~L~L~~N 367 (454)
T 1jl5_A 310 RSLCDLPPSLEELNVSN-NKLIELPA----LPPRLERLIASF--NHLAEVPE---LPQNLKQLHVEYN 367 (454)
T ss_dssp SEECCCCTTCCEEECCS-SCCSCCCC----CCTTCCEEECCS--SCCSCCCC---CCTTCCEEECCSS
T ss_pred CcccCCcCcCCEEECCC-Cccccccc----cCCcCCEEECCC--Cccccccc---hhhhccEEECCCC
Confidence 1234566666665 44544432 246677777766 45666665 3567777776654
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.59 E-value=2.7e-14 Score=127.84 Aligned_cols=177 Identities=19% Similarity=0.240 Sum_probs=138.9
Q ss_pred cccCCCcccEEeeccCcCcccc-ccccCCCCCcCEEeecCCCcchhccc-cccccccccccccccEEEeeCCCCCccc-c
Q 037573 118 VIQVLCRLKYLELIDCECLVNL-PQALHCLSSLTEITVAGCTKLVSFLE-LSSVAEMFAIITSFENIMVNGCDNLKCL-P 194 (357)
Q Consensus 118 ~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~i~~c~~l~~~~~-~~~~L~~L~~l~~L~~L~l~~c~~l~~l-p 194 (357)
.+..+++|++|+++++. +..+ |..+..+++|++|+++++..+..++. .+.. +++|+.|+++++. +..+ |
T Consensus 51 ~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~------l~~L~~L~l~~n~-l~~~~~ 122 (285)
T 1ozn_A 51 SFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG------LGRLHTLHLDRCG-LQELGP 122 (285)
T ss_dssp TTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT------CTTCCEEECTTSC-CCCCCT
T ss_pred HcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcC------CcCCCEEECCCCc-CCEECH
Confidence 36778999999999985 5554 67788999999999999765776643 3445 8999999999975 4445 6
Q ss_pred cccCCCCCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhHh-hhccCCcccceeeccCcCccccCCC--CC
Q 037573 195 HELHKLSRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALLN-GIHRLTSHQQLTVEQCPGIVAIPEN--DY 270 (357)
Q Consensus 195 ~~l~~l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~--~~ 270 (357)
..+..+++|+.|+++++ .+..++...+ .+++|++|+++++ .++.++. .+..+++|++|+++++ .+..++.. ..
T Consensus 123 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~ 199 (285)
T 1ozn_A 123 GLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRD 199 (285)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTT
T ss_pred hHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCC-cccccCHhHccC
Confidence 66888999999999985 5666665322 2359999999886 4666665 4888999999999995 56665333 34
Q ss_pred CCCcceEEecCCCCceecccccccccCCccEEEEec
Q 037573 271 PTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNG 306 (357)
Q Consensus 271 ~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~ 306 (357)
+++|+.|++++ +.++.+++..+..+++|++|++++
T Consensus 200 l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 200 LGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLND 234 (285)
T ss_dssp CTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCS
T ss_pred cccccEeeCCC-CcCCcCCHHHcccCcccCEEeccC
Confidence 78999999999 678877766678899999999998
No 65
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.59 E-value=8.7e-15 Score=135.21 Aligned_cols=177 Identities=16% Similarity=0.170 Sum_probs=104.6
Q ss_pred CcccEEeeccCcCcccccc-ccCCCCCcCEEeecCCCcchhccc-cccccccccccccccEEEeeCCCCCcccccc-cCC
Q 037573 123 CRLKYLELIDCECLVNLPQ-ALHCLSSLTEITVAGCTKLVSFLE-LSSVAEMFAIITSFENIMVNGCDNLKCLPHE-LHK 199 (357)
Q Consensus 123 ~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~-~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~-l~~ 199 (357)
++|++|+++++. ++.++. .+..+++|++|+++++ .+..++. .+.. +++|++|+++++ .+..+|.. ++.
T Consensus 52 ~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~------l~~L~~L~Ls~n-~l~~~~~~~~~~ 122 (353)
T 2z80_A 52 EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSS------LGSLEHLDLSYN-YLSNLSSSWFKP 122 (353)
T ss_dssp TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTT------CTTCCEEECCSS-CCSSCCHHHHTT
T ss_pred ccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCC------CCCCCEEECCCC-cCCcCCHhHhCC
Confidence 467777777764 455544 5667777777777764 4544433 2334 667777777764 35556554 666
Q ss_pred CCCccEEEecCCCCCcccCC-CC-CCCCCcceEEeccCCcchhh-HhhhccCCcccceeeccCcCcccc-CCC-CCCCCc
Q 037573 200 LSRLQQIEIRNCPSLVSFPE-RG-LPSTNLTAVCVINCEKLEAL-LNGIHRLTSHQQLTVEQCPGIVAI-PEN-DYPTNL 274 (357)
Q Consensus 200 l~~L~~L~l~~c~~l~~l~~-~~-~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l-~~~-~~~~~L 274 (357)
+++|++|+++++ .+..++. .. ..+++|++|+++++..++.+ +..+..+++|++|+++++ .+..+ |.. ..+++|
T Consensus 123 l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L 200 (353)
T 2z80_A 123 LSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNV 200 (353)
T ss_dssp CTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEE
T ss_pred CccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC-CcCccCHHHHhccccC
Confidence 777777777764 4555554 11 12347777777776555554 345666777777777764 34444 222 235677
Q ss_pred ceEEecCCCCceecccccccccCCccEEEEeccCCCCCc
Q 037573 275 TILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMIS 313 (357)
Q Consensus 275 ~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~ 313 (357)
++|++++ +.++.++...+..+++|++|++++ +.+..
T Consensus 201 ~~L~l~~-n~l~~~~~~~~~~~~~L~~L~L~~--n~l~~ 236 (353)
T 2z80_A 201 SHLILHM-KQHILLLEIFVDVTSSVECLELRD--TDLDT 236 (353)
T ss_dssp EEEEEEC-SCSTTHHHHHHHHTTTEEEEEEES--CBCTT
T ss_pred CeecCCC-CccccchhhhhhhcccccEEECCC--Ccccc
Confidence 7777776 445555444344567777777776 34444
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.58 E-value=3.5e-14 Score=140.34 Aligned_cols=176 Identities=23% Similarity=0.263 Sum_probs=107.1
Q ss_pred CCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCC
Q 037573 122 LCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLS 201 (357)
Q Consensus 122 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~ 201 (357)
+++|+.|+++++. +..+|.. +++|++|++++| .+..+|.. +++|+.|+++++ .+..+| ..++
T Consensus 120 l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~---------~~~L~~L~L~~N-~l~~l~---~~~~ 181 (622)
T 3g06_A 120 PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPAL---------PSELCKLWAYNN-QLTSLP---MLPS 181 (622)
T ss_dssp CTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCCC---------CTTCCEEECCSS-CCSCCC---CCCT
T ss_pred CCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCC-cCCCcCCc---------cCCCCEEECCCC-CCCCCc---ccCC
Confidence 3445555555442 3444432 355555555553 34444332 445666666553 344555 2346
Q ss_pred CccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEEecC
Q 037573 202 RLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITD 281 (357)
Q Consensus 202 ~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~ 281 (357)
+|+.|+++++ .+..+|. ..+ +|+.|++++| .++.+|. .+++|++|+++++ .++.+| ..+++|+.|++++
T Consensus 182 ~L~~L~Ls~N-~l~~l~~-~~~--~L~~L~L~~N-~l~~l~~---~~~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~ 250 (622)
T 3g06_A 182 GLQELSVSDN-QLASLPT-LPS--ELYKLWAYNN-RLTSLPA---LPSGLKELIVSGN-RLTSLP--VLPSELKELMVSG 250 (622)
T ss_dssp TCCEEECCSS-CCSCCCC-CCT--TCCEEECCSS-CCSSCCC---CCTTCCEEECCSS-CCSCCC--CCCTTCCEEECCS
T ss_pred CCcEEECCCC-CCCCCCC-ccc--hhhEEECcCC-cccccCC---CCCCCCEEEccCC-ccCcCC--CCCCcCcEEECCC
Confidence 7777777763 4555553 223 7777777664 3555553 3467888888774 677666 3457888888888
Q ss_pred CCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCc
Q 037573 282 VNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQ 333 (357)
Q Consensus 282 c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~ 333 (357)
+.++.++. .+++|++|++++ +.+..+|..+..+++|+.|++++++
T Consensus 251 -N~L~~lp~----~~~~L~~L~Ls~--N~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 251 -NRLTSLPM----LPSGLLSLSVYR--NQLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp -SCCSCCCC----CCTTCCEEECCS--SCCCSCCGGGGGSCTTCEEECCSCC
T ss_pred -CCCCcCCc----ccccCcEEeCCC--CCCCcCCHHHhhccccCEEEecCCC
Confidence 56776654 567888888887 5777888777677888888887754
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.58 E-value=6.2e-15 Score=134.21 Aligned_cols=195 Identities=14% Similarity=0.106 Sum_probs=150.8
Q ss_pred cCCCcccEEeeccCcCccc-cccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccC
Q 037573 120 QVLCRLKYLELIDCECLVN-LPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELH 198 (357)
Q Consensus 120 ~~l~~L~~L~l~~~~~l~~-lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~ 198 (357)
..+++|++|+++++. +.. .|..+..+++|++|+++++ .+..++. +.. +++|++|++++| .+..+|.
T Consensus 31 ~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~------l~~L~~L~Ls~n-~l~~l~~--- 97 (317)
T 3o53_A 31 QSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSN-VLYETLD-LES------LSTLRTLDLNNN-YVQELLV--- 97 (317)
T ss_dssp TTGGGCSEEECTTSC-CCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETT------CTTCCEEECCSS-EEEEEEE---
T ss_pred ccCCCCCEEECcCCc-cCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhh------cCCCCEEECcCC-ccccccC---
Confidence 446899999999986 455 4467899999999999996 4544443 334 899999999996 4666653
Q ss_pred CCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhh-HhhhccCCcccceeeccCcCccccCCCC---CCCCc
Q 037573 199 KLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEAL-LNGIHRLTSHQQLTVEQCPGIVAIPEND---YPTNL 274 (357)
Q Consensus 199 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~---~~~~L 274 (357)
.++|+.|+++++ .+..++...++ +|++|+++++. ++.+ +..+..+++|++|+++++ .+..++... .+++|
T Consensus 98 -~~~L~~L~l~~n-~l~~~~~~~~~--~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L 171 (317)
T 3o53_A 98 -GPSIETLHAANN-NISRVSCSRGQ--GKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTL 171 (317)
T ss_dssp -CTTCCEEECCSS-CCSEEEECCCS--SCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTC
T ss_pred -CCCcCEEECCCC-ccCCcCccccC--CCCEEECCCCC-CCCccchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcC
Confidence 489999999985 66777766666 99999999865 5555 447888999999999995 566554332 36899
Q ss_pred ceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCccccccc
Q 037573 275 TILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYIS 339 (357)
Q Consensus 275 ~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~~L~~l~ 339 (357)
++|++++ +.++.++.. ..+++|++|++++ +.+..+|..+..+++|++|+++++ .++.++
T Consensus 172 ~~L~L~~-N~l~~~~~~--~~l~~L~~L~Ls~--N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~ 230 (317)
T 3o53_A 172 EHLNLQY-NFIYDVKGQ--VVFAKLKTLDLSS--NKLAFMGPEFQSAAGVTWISLRNN-KLVLIE 230 (317)
T ss_dssp CEEECTT-SCCCEEECC--CCCTTCCEEECCS--SCCCEECGGGGGGTTCSEEECTTS-CCCEEC
T ss_pred CEEECCC-CcCcccccc--cccccCCEEECCC--CcCCcchhhhcccCcccEEECcCC-cccchh
Confidence 9999999 668776543 4699999999998 688888877777899999999875 444443
No 68
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.57 E-value=9.4e-16 Score=140.49 Aligned_cols=208 Identities=17% Similarity=0.187 Sum_probs=146.3
Q ss_pred ccCCCcccEEeeccCcCccc-cccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCc--cccc
Q 037573 119 IQVLCRLKYLELIDCECLVN-LPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLK--CLPH 195 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~-lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~--~lp~ 195 (357)
+..+++|++|++++|..-.. ++..+..+++|++|++++|.-....+..+.. +++|++|++++|..+. .+|.
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~------~~~L~~L~L~~~~~l~~~~l~~ 162 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK------NSNLVRLNLSGCSGFSEFALQT 162 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT------CTTCSEEECTTCBSCCHHHHHH
T ss_pred hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc------CCCCCEEECCCCCCCCHHHHHH
Confidence 45689999999999874333 7777888999999999998533345544444 8899999999986565 3677
Q ss_pred ccCCCCCccEEEecCCCCCcc--cCCCCCCCC-CcceEEeccCC-cc--hhhHhhhccCCcccceeeccCcCccc--cCC
Q 037573 196 ELHKLSRLQQIEIRNCPSLVS--FPERGLPST-NLTAVCVINCE-KL--EALLNGIHRLTSHQQLTVEQCPGIVA--IPE 267 (357)
Q Consensus 196 ~l~~l~~L~~L~l~~c~~l~~--l~~~~~~~~-~L~~L~l~~c~-~l--~~l~~~~~~l~~L~~L~l~~c~~l~~--l~~ 267 (357)
.+..+++|++|++++|..+.. ++.....++ +|++|++++|. .+ ..++..+..+++|++|++++|..++. ++.
T Consensus 163 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 242 (336)
T 2ast_B 163 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 242 (336)
T ss_dssp HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG
T ss_pred HHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH
Confidence 788899999999999866654 222122235 89999999985 34 45677788899999999999865442 222
Q ss_pred CCCCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCC--CCCCcceEecccCccccccc
Q 037573 268 NDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEI--GSTSLTRLWIRDFQNLEYIS 339 (357)
Q Consensus 268 ~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~--~~~sL~~L~l~~c~~L~~l~ 339 (357)
-..+++|++|++++|..+.......+..+++|++|++.+ | ++.... ...++.+|+++ |..++...
T Consensus 243 l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~-~-----i~~~~~~~l~~~l~~L~l~-~n~l~~~~ 309 (336)
T 2ast_B 243 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG-I-----VPDGTLQLLKEALPHLQIN-CSHFTTIA 309 (336)
T ss_dssp GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT-S-----SCTTCHHHHHHHSTTSEES-CCCSCCTT
T ss_pred HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC-c-----cCHHHHHHHHhhCcceEEe-cccCcccc
Confidence 233689999999998655533223467899999999999 7 443221 12346666664 55565543
No 69
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.57 E-value=1.8e-15 Score=138.68 Aligned_cols=199 Identities=14% Similarity=0.141 Sum_probs=148.6
Q ss_pred CcccEEeeccCcCccccccccCCCCCcCEEeecCCCcch-h-ccccccccccccccccccEEEeeCCCCCcccccccCCC
Q 037573 123 CRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLV-S-FLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKL 200 (357)
Q Consensus 123 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~-~-~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l 200 (357)
++++.|+++++. +...+..+..+++|++|++++|. +. . ++..... +++|++|++++|......|..++.+
T Consensus 70 ~~l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~------~~~L~~L~L~~~~l~~~~~~~l~~~ 141 (336)
T 2ast_B 70 QGVIAFRCPRSF-MDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQ------CSKLQNLSLEGLRLSDPIVNTLAKN 141 (336)
T ss_dssp TTCSEEECTTCE-ECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTT------BCCCSEEECTTCBCCHHHHHHHTTC
T ss_pred ccceEEEcCCcc-ccccchhhccCCCCCEEEccCCC-cCHHHHHHHHhh------CCCCCEEeCcCcccCHHHHHHHhcC
Confidence 789999999876 44444447789999999999975 43 2 5554445 8999999999986444677888999
Q ss_pred CCccEEEecCCCCCcc--cCC--CCCCCCCcceEEeccCCcchh--hHhhhccCC-cccceeeccCc-Ccc--ccCCC-C
Q 037573 201 SRLQQIEIRNCPSLVS--FPE--RGLPSTNLTAVCVINCEKLEA--LLNGIHRLT-SHQQLTVEQCP-GIV--AIPEN-D 269 (357)
Q Consensus 201 ~~L~~L~l~~c~~l~~--l~~--~~~~~~~L~~L~l~~c~~l~~--l~~~~~~l~-~L~~L~l~~c~-~l~--~l~~~-~ 269 (357)
++|++|++++|..+.. ++. ..++ +|++|++++|..++. ++..+..++ +|++|++++|. .+. .++.. .
T Consensus 142 ~~L~~L~L~~~~~l~~~~l~~~~~~~~--~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~ 219 (336)
T 2ast_B 142 SNLVRLNLSGCSGFSEFALQTLLSSCS--RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR 219 (336)
T ss_dssp TTCSEEECTTCBSCCHHHHHHHHHHCT--TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHhcCC--CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh
Confidence 9999999999866653 332 3345 999999999856664 677788999 99999999985 332 23322 2
Q ss_pred CCCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcC-CCCCCCCCCcceEecccC
Q 037573 270 YPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISF-PQEEIGSTSLTRLWIRDF 332 (357)
Q Consensus 270 ~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l-~~~~~~~~sL~~L~l~~c 332 (357)
.+++|++|++++|..++......+..+++|++|++++ |..+..- ...+..+++|++|++++|
T Consensus 220 ~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 220 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR-CYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTT-CTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCC-CCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 3689999999997656644344578899999999999 8744221 012335789999999988
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.56 E-value=8.4e-14 Score=125.13 Aligned_cols=172 Identities=17% Similarity=0.157 Sum_probs=142.1
Q ss_pred cCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccc-ccccCCCCCccEEEecCCCCCcccCC-C
Q 037573 143 LHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCL-PHELHKLSRLQQIEIRNCPSLVSFPE-R 220 (357)
Q Consensus 143 ~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~l~~-~ 220 (357)
++.+++++++++++ ..+..+|..+ .++++.|+++++. +..+ |..+..+++|+.|+++++ .+..++. .
T Consensus 6 ~~~l~~l~~l~~~~-~~l~~ip~~~--------~~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~ 74 (290)
T 1p9a_G 6 VSKVASHLEVNCDK-RNLTALPPDL--------PKDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRA-ELTKLQVDG 74 (290)
T ss_dssp EECSTTCCEEECTT-SCCSSCCSCC--------CTTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTS-CCCEEECCS
T ss_pred ccccCCccEEECCC-CCCCcCCCCC--------CCCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCC-ccCcccCCC
Confidence 67889999999998 5788888765 5689999999965 5555 567889999999999985 6666665 3
Q ss_pred CCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--CCCCCcceEEecCCCCceecccccccccCC
Q 037573 221 GLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKITDVNIFKSLFQWGLHRLNS 298 (357)
Q Consensus 221 ~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~ 298 (357)
.++ +|++|+++++ .++.+|..+..+++|++|++++ +.++.++.. ..+++|++|++++ +.++.+++..+..+++
T Consensus 75 ~l~--~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~ 149 (290)
T 1p9a_G 75 TLP--VLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPK 149 (290)
T ss_dssp CCT--TCCEEECCSS-CCSSCCCCTTTCTTCCEEECCS-SCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTT
T ss_pred CCC--cCCEEECCCC-cCCcCchhhccCCCCCEEECCC-CcCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccC
Confidence 444 9999999885 5788888889999999999998 578877754 3378999999999 7788887776788999
Q ss_pred ccEEEEeccCCCCCcCCCCC-CCCCCcceEecccC
Q 037573 299 LKELIVNGEFPDMISFPQEE-IGSTSLTRLWIRDF 332 (357)
Q Consensus 299 L~~L~l~~~c~~l~~l~~~~-~~~~sL~~L~l~~c 332 (357)
|+.|++++ +.+..+|... ..+++|++|++++.
T Consensus 150 L~~L~L~~--N~l~~l~~~~~~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 150 LEKLSLAN--NNLTELPAGLLNGLENLDTLLLQEN 182 (290)
T ss_dssp CCEEECTT--SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEECCC--CcCCccCHHHhcCcCCCCEEECCCC
Confidence 99999998 7899998765 35899999999864
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.55 E-value=2.1e-13 Score=134.73 Aligned_cols=179 Identities=25% Similarity=0.281 Sum_probs=124.8
Q ss_pred CCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCC
Q 037573 121 VLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKL 200 (357)
Q Consensus 121 ~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l 200 (357)
.+++|++|+++++. +..+|. .+++|++|+++++ .+..+|.. +++|+.|++++| .+..+|.. +
T Consensus 99 ~l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N-~l~~lp~~---------l~~L~~L~Ls~N-~l~~l~~~---~ 160 (622)
T 3g06_A 99 LPPGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGN-QLTSLPVL---------PPGLQELSVSDN-QLASLPAL---P 160 (622)
T ss_dssp CCTTCCEEEECSCC-CCCCCC---CCTTCCEEECCSS-CCSCCCCC---------CTTCCEEECCSS-CCSCCCCC---C
T ss_pred CCCCCCEEECcCCc-CCCCCC---CCCCcCEEECCCC-CCCcCCCC---------CCCCCEEECcCC-cCCCcCCc---c
Confidence 35667777776653 455555 4566777777663 45555543 577888888875 46666643 4
Q ss_pred CCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEEec
Q 037573 201 SRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKIT 280 (357)
Q Consensus 201 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~ 280 (357)
++|+.|++++ ..+..+| ..++ +|+.|++++|. ++.+|. .+++|+.|+++++ .++.+|. .+++|++|+++
T Consensus 161 ~~L~~L~L~~-N~l~~l~-~~~~--~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N-~l~~l~~--~~~~L~~L~Ls 229 (622)
T 3g06_A 161 SELCKLWAYN-NQLTSLP-MLPS--GLQELSVSDNQ-LASLPT---LPSELYKLWAYNN-RLTSLPA--LPSGLKELIVS 229 (622)
T ss_dssp TTCCEEECCS-SCCSCCC-CCCT--TCCEEECCSSC-CSCCCC---CCTTCCEEECCSS-CCSSCCC--CCTTCCEEECC
T ss_pred CCCCEEECCC-CCCCCCc-ccCC--CCcEEECCCCC-CCCCCC---ccchhhEEECcCC-cccccCC--CCCCCCEEEcc
Confidence 6777888876 4666676 3444 88888887744 666654 3478888888884 6777764 35789999999
Q ss_pred CCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCccccccc
Q 037573 281 DVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYIS 339 (357)
Q Consensus 281 ~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~~L~~l~ 339 (357)
+ +.++.++ ..+++|++|++++ +.+..+|. .+++|++|+++++ .++.++
T Consensus 230 ~-N~L~~lp----~~l~~L~~L~Ls~--N~L~~lp~---~~~~L~~L~Ls~N-~L~~lp 277 (622)
T 3g06_A 230 G-NRLTSLP----VLPSELKELMVSG--NRLTSLPM---LPSGLLSLSVYRN-QLTRLP 277 (622)
T ss_dssp S-SCCSCCC----CCCTTCCEEECCS--SCCSCCCC---CCTTCCEEECCSS-CCCSCC
T ss_pred C-CccCcCC----CCCCcCcEEECCC--CCCCcCCc---ccccCcEEeCCCC-CCCcCC
Confidence 8 6777665 4568899999998 58888887 6789999999876 455554
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.54 E-value=2.7e-14 Score=137.68 Aligned_cols=190 Identities=12% Similarity=0.047 Sum_probs=148.1
Q ss_pred CCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCC
Q 037573 121 VLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKL 200 (357)
Q Consensus 121 ~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l 200 (357)
.+++|++|+++++..-...|..++.+++|++|+++++. +...++ +.. +++|+.|++++| .+..+|. .
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~------l~~L~~L~Ls~N-~l~~l~~----~ 98 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LES------LSTLRTLDLNNN-YVQELLV----G 98 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTT------CTTCCEEECCSS-EEEEEEE----C
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-ccc------CCCCCEEEecCC-cCCCCCC----C
Confidence 35699999999986433345689999999999999964 554444 334 899999999996 4666664 3
Q ss_pred CCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCcccc-CCC--CCCCCcceE
Q 037573 201 SRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAI-PEN--DYPTNLTIL 277 (357)
Q Consensus 201 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l-~~~--~~~~~L~~L 277 (357)
++|+.|+++++ .+..++...++ +|++|++++|.--...|..+..+++|++|+++++ .+... |.. ..+++|++|
T Consensus 99 ~~L~~L~L~~N-~l~~~~~~~l~--~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 99 PSIETLHAANN-NISRVSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHL 174 (487)
T ss_dssp TTCCEEECCSS-CCCCEEECCCS--SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEE
T ss_pred CCcCEEECcCC-cCCCCCccccC--CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEE
Confidence 89999999985 66667666666 9999999986643344567889999999999995 55543 332 136899999
Q ss_pred EecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccC
Q 037573 278 KITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDF 332 (357)
Q Consensus 278 ~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c 332 (357)
++++ +.++.++.. ..+++|++|++++ +.+..+|..+..+++|++|+++++
T Consensus 175 ~Ls~-N~l~~~~~~--~~l~~L~~L~Ls~--N~l~~~~~~~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 175 NLQY-NFIYDVKGQ--VVFAKLKTLDLSS--NKLAFMGPEFQSAAGVTWISLRNN 224 (487)
T ss_dssp ECTT-SCCCEEECC--CCCTTCCEEECCS--SCCCEECGGGGGGTTCSEEECTTS
T ss_pred ecCC-Ccccccccc--ccCCCCCEEECCC--CCCCCCCHhHcCCCCccEEEecCC
Confidence 9999 668776543 5699999999998 788888877777899999999874
No 73
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.54 E-value=8.2e-14 Score=128.58 Aligned_cols=204 Identities=18% Similarity=0.201 Sum_probs=151.6
Q ss_pred CcccEEeeccCcCcccccc-ccCCCCCcCEEeecCCCcchhcccccc-ccccccccccccEEEeeCCCCCcccc-cccCC
Q 037573 123 CRLKYLELIDCECLVNLPQ-ALHCLSSLTEITVAGCTKLVSFLELSS-VAEMFAIITSFENIMVNGCDNLKCLP-HELHK 199 (357)
Q Consensus 123 ~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~~-~L~~L~~l~~L~~L~l~~c~~l~~lp-~~l~~ 199 (357)
+++++|+++++. ++.+|. .+..+++|++|+++++..++.+|...+ + +++++.+.+.+++.+..+| ..+..
T Consensus 30 ~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~------L~~l~~~l~~~~N~l~~l~~~~f~~ 102 (350)
T 4ay9_X 30 RNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN------LPKLHEIRIEKANNLLYINPEAFQN 102 (350)
T ss_dssp TTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCS------CTTCCEEEEEEETTCCEECTTSBCC
T ss_pred CCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhc------chhhhhhhcccCCcccccCchhhhh
Confidence 678899998864 778875 578899999999998765566665442 4 6777776666666788774 45678
Q ss_pred CCCccEEEecCCCCCcccCCC-CCCCCCcceEEeccCCcchhhHh-hhccC-CcccceeeccCcCccccCCCCC-CCCcc
Q 037573 200 LSRLQQIEIRNCPSLVSFPER-GLPSTNLTAVCVINCEKLEALLN-GIHRL-TSHQQLTVEQCPGIVAIPENDY-PTNLT 275 (357)
Q Consensus 200 l~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~l~~-~~~~l-~~L~~L~l~~c~~l~~l~~~~~-~~~L~ 275 (357)
+++|+.|+++++ .+..++.. .....++..+++.++..+..++. .+..+ ..++.|++++ +.++.++...+ ..+|+
T Consensus 103 l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~~f~~~~L~ 180 (350)
T 4ay9_X 103 LPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNSAFNGTQLD 180 (350)
T ss_dssp CTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTSSTTEEEE
T ss_pred cccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChhhccccchh
Confidence 899999999874 56666652 22334677888888777777764 34444 4578888887 57888876633 56888
Q ss_pred eEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCccccccc
Q 037573 276 ILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYIS 339 (357)
Q Consensus 276 ~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~~L~~l~ 339 (357)
++++.+++.++.++...+..+++|++|++++ ++++.+|... +.+|++|.+.++.+++.++
T Consensus 181 ~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~--N~l~~lp~~~--~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 181 ELNLSDNNNLEELPNDVFHGASGPVILDISR--TRIHSLPSYG--LENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp EEECTTCTTCCCCCTTTTTTEECCSEEECTT--SCCCCCCSSS--CTTCCEEECTTCTTCCCCC
T ss_pred HHhhccCCcccCCCHHHhccCcccchhhcCC--CCcCccChhh--hccchHhhhccCCCcCcCC
Confidence 9999888888888877778889999999998 6888888754 5678888888887777776
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.53 E-value=9.2e-14 Score=125.98 Aligned_cols=176 Identities=20% Similarity=0.264 Sum_probs=139.4
Q ss_pred cccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccccccc
Q 037573 118 VIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHEL 197 (357)
Q Consensus 118 ~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l 197 (357)
.+..+++|++|+++++. +..++. +..+++|++|+++++ .+..++. +.. +++|+.|++++|. +..+|. +
T Consensus 58 ~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~------l~~L~~L~l~~n~-l~~~~~-l 125 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGN-PLKNVSA-IAG------LQSIKTLDLTSTQ-ITDVTP-L 125 (308)
T ss_dssp TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSC-CCSCCGG-GTT------CTTCCEEECTTSC-CCCCGG-G
T ss_pred hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCC-cCCCchh-hcC------CCCCCEEECCCCC-CCCchh-h
Confidence 36778999999999985 677777 899999999999996 4666653 334 8999999999964 677765 8
Q ss_pred CCCCCccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcce
Q 037573 198 HKLSRLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTI 276 (357)
Q Consensus 198 ~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~ 276 (357)
..+++|+.|+++++ .+..++. ..++ +|++|++++| .++.++. +..+++|++|+++++ .+..++....+++|++
T Consensus 126 ~~l~~L~~L~l~~n-~l~~~~~l~~l~--~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~ 199 (308)
T 1h6u_A 126 AGLSNLQVLYLDLN-QITNISPLAGLT--NLQYLSIGNA-QVSDLTP-LANLSKLTTLKADDN-KISDISPLASLPNLIE 199 (308)
T ss_dssp TTCTTCCEEECCSS-CCCCCGGGGGCT--TCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGGGCTTCCE
T ss_pred cCCCCCCEEECCCC-ccCcCccccCCC--CccEEEccCC-cCCCChh-hcCCCCCCEEECCCC-ccCcChhhcCCCCCCE
Confidence 89999999999986 5555554 3344 9999999986 4677765 889999999999985 6776665455789999
Q ss_pred EEecCCCCceecccccccccCCccEEEEeccCCCCCcCCC
Q 037573 277 LKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQ 316 (357)
Q Consensus 277 L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~ 316 (357)
|++++ +.++.+++ +..+++|++|++++ +.+...|.
T Consensus 200 L~L~~-N~l~~~~~--l~~l~~L~~L~l~~--N~i~~~~~ 234 (308)
T 1h6u_A 200 VHLKN-NQISDVSP--LANTSNLFIVTLTN--QTITNQPV 234 (308)
T ss_dssp EECTT-SCCCBCGG--GTTCTTCCEEEEEE--EEEECCCE
T ss_pred EEccC-CccCcccc--ccCCCCCCEEEccC--CeeecCCe
Confidence 99999 67776663 68899999999998 45655543
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.53 E-value=2.4e-13 Score=120.76 Aligned_cols=171 Identities=27% Similarity=0.364 Sum_probs=134.5
Q ss_pred CcccEEeeccCcCcccccc-ccCCCCCcCEEeecCCCcchhccccc-cccccccccccccEEEeeCCCCCccccc-ccCC
Q 037573 123 CRLKYLELIDCECLVNLPQ-ALHCLSSLTEITVAGCTKLVSFLELS-SVAEMFAIITSFENIMVNGCDNLKCLPH-ELHK 199 (357)
Q Consensus 123 ~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~-~~L~~L~~l~~L~~L~l~~c~~l~~lp~-~l~~ 199 (357)
+++++|+++++. +..++. .++.+++|++|+++++ .+..++... .. +++|++|+++++ .+..+|. .+..
T Consensus 37 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~------l~~L~~L~l~~n-~l~~~~~~~~~~ 107 (270)
T 2o6q_A 37 ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKE------LKNLETLWVTDN-KLQALPIGVFDQ 107 (270)
T ss_dssp TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSS------CTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcC------CCCCCEEECCCC-cCCcCCHhHccc
Confidence 679999999876 566654 6889999999999984 577777654 35 889999999986 4666764 4577
Q ss_pred CCCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhHhh-hccCCcccceeeccCcCccccCCCC--CCCCcc
Q 037573 200 LSRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALLNG-IHRLTSHQQLTVEQCPGIVAIPEND--YPTNLT 275 (357)
Q Consensus 200 l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~ 275 (357)
+++|+.|+++++ .+..++...+ .+++|++|+++++. ++.+|.. +..+++|++|+++++ .++.++... .+++|+
T Consensus 108 l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 184 (270)
T 2o6q_A 108 LVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELK 184 (270)
T ss_dssp CSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCC
T ss_pred ccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcC
Confidence 999999999984 6666665332 23599999998864 6666654 788999999999985 677777643 368999
Q ss_pred eEEecCCCCceecccccccccCCccEEEEec
Q 037573 276 ILKITDVNIFKSLFQWGLHRLNSLKELIVNG 306 (357)
Q Consensus 276 ~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~ 306 (357)
+|++++ +.++.++...+..+++|++|++.+
T Consensus 185 ~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 185 TLKLDN-NQLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp EEECCS-SCCSCCCTTTTTTCTTCCEEECCS
T ss_pred EEECCC-CcCCcCCHHHhccccCCCEEEecC
Confidence 999999 678878776678899999999998
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.53 E-value=1.5e-13 Score=124.60 Aligned_cols=193 Identities=12% Similarity=0.113 Sum_probs=138.1
Q ss_pred CCcccEEeeccCcCcccccccc--CCCCCcCEEeecCCCcchhcc----ccccccccccccccccEEEeeCCCCCccccc
Q 037573 122 LCRLKYLELIDCECLVNLPQAL--HCLSSLTEITVAGCTKLVSFL----ELSSVAEMFAIITSFENIMVNGCDNLKCLPH 195 (357)
Q Consensus 122 l~~L~~L~l~~~~~l~~lp~~~--~~l~~L~~L~i~~c~~l~~~~----~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~ 195 (357)
+++|++|+++++...+..|..+ ..+++|++|+++++.--...+ ..... +++|++|++++|.-....|.
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~------~~~L~~L~Ls~n~l~~~~~~ 163 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL------KPGLKVLSIAQAHSPAFSCE 163 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB------CSCCCEEEEECCSSCCCCTT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh------ccCCCEEEeeCCCcchhhHH
Confidence 4679999999987666677766 889999999999864322222 11113 88999999999764333346
Q ss_pred ccCCCCCccEEEecCCCCCcc--cCC----CCCCCCCcceEEeccCCcchhhHh----hhccCCcccceeeccCcCcccc
Q 037573 196 ELHKLSRLQQIEIRNCPSLVS--FPE----RGLPSTNLTAVCVINCEKLEALLN----GIHRLTSHQQLTVEQCPGIVAI 265 (357)
Q Consensus 196 ~l~~l~~L~~L~l~~c~~l~~--l~~----~~~~~~~L~~L~l~~c~~l~~l~~----~~~~l~~L~~L~l~~c~~l~~l 265 (357)
.++.+++|++|+++++.-... ++. ..++ +|++|++++|. ++.++. .++.+++|++|+++++ .+...
T Consensus 164 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~--~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~ 239 (310)
T 4glp_A 164 QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP--AIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHN-SLRAT 239 (310)
T ss_dssp SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC--CCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTS-CCCCC
T ss_pred HhccCCCCCEEECCCCCCccchhhhHHHhhhcCC--CCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCC-CCCcc
Confidence 788899999999998753321 221 3444 99999999865 565544 2478899999999985 56655
Q ss_pred -CCC-CC---CCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEeccc
Q 037573 266 -PEN-DY---PTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRD 331 (357)
Q Consensus 266 -~~~-~~---~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~ 331 (357)
|.. +. +++|++|++++ +.++.++.. + .++|++|++++ +.+..+|.. ..+++|++|++++
T Consensus 240 ~p~~~~~~~~~~~L~~L~Ls~-N~l~~lp~~-~--~~~L~~L~Ls~--N~l~~~~~~-~~l~~L~~L~L~~ 303 (310)
T 4glp_A 240 VNPSAPRCMWSSALNSLNLSF-AGLEQVPKG-L--PAKLRVLDLSS--NRLNRAPQP-DELPEVDNLTLDG 303 (310)
T ss_dssp CCSCCSSCCCCTTCCCEECCS-SCCCSCCSC-C--CSCCSCEECCS--CCCCSCCCT-TSCCCCSCEECSS
T ss_pred chhhHHhccCcCcCCEEECCC-CCCCchhhh-h--cCCCCEEECCC--CcCCCCchh-hhCCCccEEECcC
Confidence 433 22 47999999998 778877654 3 38999999998 788887652 3556777776654
No 77
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.53 E-value=4.8e-14 Score=138.24 Aligned_cols=243 Identities=15% Similarity=0.084 Sum_probs=164.1
Q ss_pred CcccceEEeeccCCCCCCCCccccccchhHHHhhhcccccccchhhhhhhccCCccccccccccccCCcccccCCCcccE
Q 037573 48 STSKAWKLIIRTCCSNFNTPSLMFNASMRYKLKDSTTRLQEIDMEKEQLILKSNSGERSKKVGQRLSTTSVIQVLCRLKY 127 (357)
Q Consensus 48 ~~~~l~~l~l~~c~~~~~~~~l~~l~~L~~l~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 127 (357)
..++++.+++++|......+.+..+ .|+.+.+.++. +..++... .-.+........ ..........+++|++
T Consensus 280 ~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~-~~~l~~~~-l~~L~~L~l~~n-----~~~~~~~~~~~~~L~~ 351 (570)
T 2z63_A 280 CLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCK-FGQFPTLK-LKSLKRLTFTSN-----KGGNAFSEVDLPSLEF 351 (570)
T ss_dssp GGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCB-CSSCCBCB-CSSCCEEEEESC-----BSCCBCCCCBCTTCCE
T ss_pred CcCcccEEEecCccchhhhhhhccC-CccEEeeccCc-ccccCccc-ccccCEEeCcCC-----ccccccccccCCCCCE
Confidence 3568888988887643332334444 67666665543 22332210 000111100000 0111111267899999
Q ss_pred EeeccCcCcccc---ccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccc-c-cccCCCCC
Q 037573 128 LELIDCECLVNL---PQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCL-P-HELHKLSR 202 (357)
Q Consensus 128 L~l~~~~~l~~l---p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~l-p-~~l~~l~~ 202 (357)
|+++++. +..+ |..+..+++|++|+++++ .+..++..+.. +++|+.|++++|. +... | ..+..+++
T Consensus 352 L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~------l~~L~~L~l~~n~-l~~~~~~~~~~~l~~ 422 (570)
T 2z63_A 352 LDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLG------LEQLEHLDFQHSN-LKQMSEFSVFLSLRN 422 (570)
T ss_dssp EECCSSC-CBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEEEET------CTTCCEEECTTSE-EESCTTSCTTTTCTT
T ss_pred EeCcCCc-cCccccccccccccCccCEEECCCC-ccccccccccc------cCCCCEEEccCCc-cccccchhhhhcCCC
Confidence 9999986 3443 567889999999999996 46666655445 8999999999965 4443 3 35788999
Q ss_pred ccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcc-hhhHhhhccCCcccceeeccCcCcccc-CCC-CCCCCcceEEe
Q 037573 203 LQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKL-EALLNGIHRLTSHQQLTVEQCPGIVAI-PEN-DYPTNLTILKI 279 (357)
Q Consensus 203 L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~l-~~~-~~~~~L~~L~l 279 (357)
|+.|++++|......+.....+++|++|++++|... ..+|..+..+++|++|++++| .++.+ |.. ..+++|++|++
T Consensus 423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeC
Confidence 999999997544434432222349999999997643 357888999999999999996 56666 433 44789999999
Q ss_pred cCCCCceecccccccccCCccEEEEeccCCC
Q 037573 280 TDVNIFKSLFQWGLHRLNSLKELIVNGEFPD 310 (357)
Q Consensus 280 ~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~ 310 (357)
++ +.++.+++..+..+++|++|++++ ++-
T Consensus 502 ~~-n~l~~~~~~~~~~l~~L~~L~l~~-N~~ 530 (570)
T 2z63_A 502 AS-NQLKSVPDGIFDRLTSLQKIWLHT-NPW 530 (570)
T ss_dssp CS-SCCSCCCTTTTTTCTTCCEEECCS-SCB
T ss_pred CC-CcCCCCCHHHhhcccCCcEEEecC-Ccc
Confidence 99 578877776688999999999998 543
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.52 E-value=1.8e-13 Score=121.74 Aligned_cols=175 Identities=22% Similarity=0.340 Sum_probs=126.4
Q ss_pred ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccc-c
Q 037573 119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHE-L 197 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~-l 197 (357)
...+++|+.|.+.++. +..++. ++.+++|++|+++++ .+..++ .+.. +++|++|++++| .+..+|.. +
T Consensus 37 ~~~l~~L~~L~l~~~~-i~~~~~-l~~l~~L~~L~l~~n-~l~~~~-~l~~------l~~L~~L~L~~n-~l~~~~~~~~ 105 (272)
T 3rfs_A 37 QNELNSIDQIIANNSD-IKSVQG-IQYLPNVRYLALGGN-KLHDIS-ALKE------LTNLTYLILTGN-QLQSLPNGVF 105 (272)
T ss_dssp HHHHTTCCEEECTTSC-CCCCTT-GGGCTTCCEEECTTS-CCCCCG-GGTT------CTTCCEEECTTS-CCCCCCTTTT
T ss_pred cccccceeeeeeCCCC-cccccc-cccCCCCcEEECCCC-CCCCch-hhcC------CCCCCEEECCCC-ccCccChhHh
Confidence 4557888899998875 566654 778899999999885 455544 2223 888999999886 45666544 5
Q ss_pred CCCCCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhHh-hhccCCcccceeeccCcCccccCCC--CCCCC
Q 037573 198 HKLSRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALLN-GIHRLTSHQQLTVEQCPGIVAIPEN--DYPTN 273 (357)
Q Consensus 198 ~~l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~ 273 (357)
..+++|+.|+++++ .+..++...+ .+++|++|++++|. ++.++. .+..+++|++|++++| .++.++.. +.+++
T Consensus 106 ~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~ 182 (272)
T 3rfs_A 106 DKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQ 182 (272)
T ss_dssp TTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred cCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCcc
Confidence 77889999999875 5666665322 23489999998864 566654 4578889999999885 56666654 34688
Q ss_pred cceEEecCCCCceecccccccccCCccEEEEeccCC
Q 037573 274 LTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFP 309 (357)
Q Consensus 274 L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~ 309 (357)
|++|++++ +.++.+++..+..+++|++|++.+ ++
T Consensus 183 L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~-N~ 216 (272)
T 3rfs_A 183 LKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHD-NP 216 (272)
T ss_dssp CCEEECCS-SCCSCCCTTTTTTCTTCCEEECCS-SC
T ss_pred CCEEECCC-CcCCccCHHHHhCCcCCCEEEccC-CC
Confidence 99999988 567767666567888999999988 53
No 79
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.52 E-value=3.4e-13 Score=133.55 Aligned_cols=103 Identities=20% Similarity=0.213 Sum_probs=70.8
Q ss_pred CCcceEEeccCCcchh-hHhhhccCCcccceeeccCcCccccCCC--CCCCCcceEEecCCCCceecccccccccCCccE
Q 037573 225 TNLTAVCVINCEKLEA-LLNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKE 301 (357)
Q Consensus 225 ~~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~ 301 (357)
++|+.|+++++..... .|..+..+++|++|++++| .++.++.. +.+++|++|++++ +.++.+++..+..+++|++
T Consensus 469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~ 546 (635)
T 4g8a_A 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQV 546 (635)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCE
T ss_pred hhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCC-CcCCCCChhHHhCCCCCCE
Confidence 3666777766654443 3456777888888888885 56666544 2367888888888 6777777666778888888
Q ss_pred EEEeccCCCCCcCCCC-CC-CCCCcceEeccc
Q 037573 302 LIVNGEFPDMISFPQE-EI-GSTSLTRLWIRD 331 (357)
Q Consensus 302 L~l~~~c~~l~~l~~~-~~-~~~sL~~L~l~~ 331 (357)
|++++ +++..++.. +. .+++|++|++++
T Consensus 547 L~Ls~--N~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 547 LDYSL--NHIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp EECTT--SCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred EECCC--CcCCCCCHHHHHhhhCcCCEEEeeC
Confidence 88887 667666443 32 246788888864
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.49 E-value=2.9e-13 Score=120.56 Aligned_cols=176 Identities=20% Similarity=0.283 Sum_probs=132.1
Q ss_pred cccCCCcccEEeeccCcCccccc-cccCCCCCcCEEeecCCCcchhccc-cccccccccccccccEEEeeCCCCCccccc
Q 037573 118 VIQVLCRLKYLELIDCECLVNLP-QALHCLSSLTEITVAGCTKLVSFLE-LSSVAEMFAIITSFENIMVNGCDNLKCLPH 195 (357)
Q Consensus 118 ~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~i~~c~~l~~~~~-~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~ 195 (357)
.+..+++|++|+++++. +..++ ..+..+++|++|+++++ .+..++. .+.. +++|+.|+++++. +..++.
T Consensus 47 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~------l~~L~~L~l~~n~-l~~~~~ 117 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSG------LSSLQKLVAVETN-LASLEN 117 (276)
T ss_dssp TTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTT------CTTCCEEECTTSC-CCCSTT
T ss_pred HhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCC-ccCccChhhhcC------CccccEEECCCCC-ccccCc
Confidence 36778999999999985 55655 46889999999999985 4555553 3345 8999999999864 555544
Q ss_pred -ccCCCCCccEEEecCCCCCcc--cCCCCCCCCCcceEEeccCCcchhh-HhhhccCCccc----ceeeccCcCccccCC
Q 037573 196 -ELHKLSRLQQIEIRNCPSLVS--FPERGLPSTNLTAVCVINCEKLEAL-LNGIHRLTSHQ----QLTVEQCPGIVAIPE 267 (357)
Q Consensus 196 -~l~~l~~L~~L~l~~c~~l~~--l~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~----~L~l~~c~~l~~l~~ 267 (357)
.++.+++|+.|+++++ .+.. +|.....+++|++|+++++. ++.+ +..+..+++|+ +|++++ +.+..++.
T Consensus 118 ~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L~ls~-n~l~~~~~ 194 (276)
T 2z62_A 118 FPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSL-NPMNFIQP 194 (276)
T ss_dssp CCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEEECCS-SCCCEECT
T ss_pred hhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceeeecCC-CcccccCc
Confidence 6888999999999985 4554 34322223499999999865 4544 34555666666 788888 46777766
Q ss_pred CCC-CCCcceEEecCCCCceecccccccccCCccEEEEec
Q 037573 268 NDY-PTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNG 306 (357)
Q Consensus 268 ~~~-~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~ 306 (357)
..+ ..+|+.|++++ +.++.++...+..+++|++|++++
T Consensus 195 ~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 195 GAFKEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp TSSCSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCS
T ss_pred cccCCCcccEEECCC-CceeecCHhHhcccccccEEEccC
Confidence 533 45899999999 678888777678899999999997
No 81
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.48 E-value=6.6e-14 Score=127.13 Aligned_cols=199 Identities=14% Similarity=0.127 Sum_probs=144.0
Q ss_pred ccEEeeccCcC-ccccccccC-------CCCCcCEEeecCCCcchhccccc--cccccccccccccEEEeeCCCCCcccc
Q 037573 125 LKYLELIDCEC-LVNLPQALH-------CLSSLTEITVAGCTKLVSFLELS--SVAEMFAIITSFENIMVNGCDNLKCLP 194 (357)
Q Consensus 125 L~~L~l~~~~~-l~~lp~~~~-------~l~~L~~L~i~~c~~l~~~~~~~--~~L~~L~~l~~L~~L~l~~c~~l~~lp 194 (357)
|+.|+++++.. -..+|..+. .+++|++|+++++.--..+|..+ .. +++|+.|+++++. +..+|
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~------l~~L~~L~Ls~N~-l~~~~ 137 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT------GPDLNILNLRNVS-WATRD 137 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC------SCCCSEEEEESCB-CSSSS
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc------CCCccEEEccCCC-Ccchh
Confidence 66677776543 123555444 68999999999965434667654 45 8999999999964 66667
Q ss_pred cccCCC-----CCccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchh--hHhhh--ccCCcccceeeccCcCccc
Q 037573 195 HELHKL-----SRLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEA--LLNGI--HRLTSHQQLTVEQCPGIVA 264 (357)
Q Consensus 195 ~~l~~l-----~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~--l~~~~--~~l~~L~~L~l~~c~~l~~ 264 (357)
..++.+ ++|++|+++++ .+..++. ....+++|++|+++++...+. ++..+ ..+++|++|+++++ .++.
T Consensus 138 ~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~ 215 (312)
T 1wwl_A 138 AWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMET 215 (312)
T ss_dssp SHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCC
T ss_pred HHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcc
Confidence 777666 89999999985 5666664 222345999999999775443 34455 88999999999995 5663
Q ss_pred cCC---C--CCCCCcceEEecCCCCceecc-cccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecccCcccccc
Q 037573 265 IPE---N--DYPTNLTILKITDVNIFKSLF-QWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQNLEYI 338 (357)
Q Consensus 265 l~~---~--~~~~~L~~L~l~~c~~l~~~~-~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~~L~~l 338 (357)
++. . ..+++|+.|++++ +.++... ...+..+++|++|++++ +.++.+|..+. ++|++|++++. .++.+
T Consensus 216 ~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~Ls~--N~l~~ip~~~~--~~L~~L~Ls~N-~l~~~ 289 (312)
T 1wwl_A 216 PSGVCSALAAARVQLQGLDLSH-NSLRDAAGAPSCDWPSQLNSLNLSF--TGLKQVPKGLP--AKLSVLDLSYN-RLDRN 289 (312)
T ss_dssp HHHHHHHHHHTTCCCSEEECTT-SCCCSSCCCSCCCCCTTCCEEECTT--SCCSSCCSSCC--SEEEEEECCSS-CCCSC
T ss_pred hHHHHHHHHhcCCCCCEEECCC-CcCCcccchhhhhhcCCCCEEECCC--CccChhhhhcc--CCceEEECCCC-CCCCC
Confidence 321 1 1357999999999 6677543 23356689999999998 68889998774 89999999865 44444
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.47 E-value=1.1e-12 Score=115.27 Aligned_cols=169 Identities=21% Similarity=0.291 Sum_probs=122.7
Q ss_pred CcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhcccc-ccccccccccccccEEEeeCCCCCcccc-cccCCC
Q 037573 123 CRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLEL-SSVAEMFAIITSFENIMVNGCDNLKCLP-HELHKL 200 (357)
Q Consensus 123 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~-~~~L~~L~~l~~L~~L~l~~c~~l~~lp-~~l~~l 200 (357)
...+.+++++. .+..+|..+. ++++.|+++++ .+..++.. +.. +++|++|+++++. +..++ ..+..+
T Consensus 14 ~~~~~l~~~~~-~l~~~p~~~~--~~l~~L~L~~n-~l~~~~~~~~~~------l~~L~~L~L~~n~-l~~~~~~~~~~l 82 (251)
T 3m19_A 14 EGKKEVDCQGK-SLDSVPSGIP--ADTEKLDLQST-GLATLSDATFRG------LTKLTWLNLDYNQ-LQTLSAGVFDDL 82 (251)
T ss_dssp GGGTEEECTTC-CCSSCCSCCC--TTCCEEECTTS-CCCCCCTTTTTT------CTTCCEEECTTSC-CCCCCTTTTTTC
T ss_pred CCCeEEecCCC-CccccCCCCC--CCCCEEEccCC-CcCccCHhHhcC------cccCCEEECCCCc-CCccCHhHhccC
Confidence 45677888775 4777887554 68999999885 45555543 335 8899999998864 55554 446788
Q ss_pred CCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhHhh-hccCCcccceeeccCcCccccCCC--CCCCCcce
Q 037573 201 SRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALLNG-IHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTI 276 (357)
Q Consensus 201 ~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~ 276 (357)
++|+.|+++++ .+..++...+ .+++|++|+++++ .++.++.. +..+++|++|+++++ .++.++.. +.+++|++
T Consensus 83 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 159 (251)
T 3m19_A 83 TELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQT 159 (251)
T ss_dssp TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CcCCEEECCCC-cccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCE
Confidence 99999999874 5666665322 2348999999875 46666554 577888999999884 67777764 33678999
Q ss_pred EEecCCCCceecccccccccCCccEEEEec
Q 037573 277 LKITDVNIFKSLFQWGLHRLNSLKELIVNG 306 (357)
Q Consensus 277 L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~ 306 (357)
|++++ +.++.+++..+..+++|++|++.+
T Consensus 160 L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 160 LSLST-NQLQSVPHGAFDRLGKLQTITLFG 188 (251)
T ss_dssp EECCS-SCCSCCCTTTTTTCTTCCEEECCS
T ss_pred EECCC-CcCCccCHHHHhCCCCCCEEEeeC
Confidence 99988 677777766677888899999887
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.47 E-value=1e-12 Score=116.76 Aligned_cols=199 Identities=22% Similarity=0.318 Sum_probs=147.2
Q ss_pred CcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCC
Q 037573 123 CRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSR 202 (357)
Q Consensus 123 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~ 202 (357)
.++..+.+.+.. +.... ....+++|+.|++.++ .+..++. +.. +++|+.|+++++. +..++ .+..+++
T Consensus 19 ~~l~~l~l~~~~-~~~~~-~~~~l~~L~~L~l~~~-~i~~~~~-l~~------l~~L~~L~l~~n~-l~~~~-~l~~l~~ 86 (272)
T 3rfs_A 19 AETIKANLKKKS-VTDAV-TQNELNSIDQIIANNS-DIKSVQG-IQY------LPNVRYLALGGNK-LHDIS-ALKELTN 86 (272)
T ss_dssp HHHHHHHHTCSC-TTSEE-CHHHHTTCCEEECTTS-CCCCCTT-GGG------CTTCCEEECTTSC-CCCCG-GGTTCTT
T ss_pred HHHHHHHhcCcc-ccccc-ccccccceeeeeeCCC-Ccccccc-ccc------CCCCcEEECCCCC-CCCch-hhcCCCC
Confidence 344444454432 22322 2556889999999985 4555543 223 8999999999964 66664 6889999
Q ss_pred ccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhHh-hhccCCcccceeeccCcCccccCCC--CCCCCcceEE
Q 037573 203 LQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALLN-GIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILK 278 (357)
Q Consensus 203 L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~ 278 (357)
|++|+++++ .+..++...+ .+++|++|++++|. ++.++. .+..+++|++|+++++ .++.++.. +.+++|+.|+
T Consensus 87 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 163 (272)
T 3rfs_A 87 LTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELD 163 (272)
T ss_dssp CCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEECCCC-ccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEE
Confidence 999999986 6667765332 23499999999865 556554 4788999999999996 67777764 3478999999
Q ss_pred ecCCCCceecccccccccCCccEEEEeccCCCCCcCCCC-CCCCCCcceEeccc------Cccccccc
Q 037573 279 ITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQE-EIGSTSLTRLWIRD------FQNLEYIS 339 (357)
Q Consensus 279 l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~-~~~~~sL~~L~l~~------c~~L~~l~ 339 (357)
+++ +.++.+++..+..+++|++|++.+ +.+..++.. +..+++|++|++++ |+.++.+.
T Consensus 164 l~~-n~l~~~~~~~~~~l~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~ 228 (272)
T 3rfs_A 164 LSY-NQLQSLPEGVFDKLTQLKDLRLYQ--NQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLS 228 (272)
T ss_dssp CCS-SCCCCCCTTTTTTCTTCCEEECCS--SCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHH
T ss_pred CCC-CCcCccCHHHhcCCccCCEEECCC--CcCCccCHHHHhCCcCCCEEEccCCCccccCcHHHHHH
Confidence 999 578877776678899999999998 577777654 45689999999986 56666654
No 84
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.47 E-value=4.6e-13 Score=130.89 Aligned_cols=175 Identities=22% Similarity=0.281 Sum_probs=119.9
Q ss_pred cccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCCc
Q 037573 124 RLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRL 203 (357)
Q Consensus 124 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L 203 (357)
+|+.|+++++. +..+|..+ +++|++|+++++ .+..+| . . +++|+.|++++| .+..+|. +.. +|
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~l--~~~L~~L~Ls~N-~l~~ip-~--~------l~~L~~L~Ls~N-~l~~ip~-l~~--~L 122 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDNL--PPQITVLEITQN-ALISLP-E--L------PASLEYLDACDN-RLSTLPE-LPA--SL 122 (571)
T ss_dssp TCSEEECCSSC-CSCCCSCC--CTTCSEEECCSS-CCSCCC-C--C------CTTCCEEECCSS-CCSCCCC-CCT--TC
T ss_pred CccEEEeCCCC-CCccCHhH--cCCCCEEECcCC-CCcccc-c--c------cCCCCEEEccCC-CCCCcch-hhc--CC
Confidence 77888887764 56677655 377888888874 566676 2 2 678888888875 4666776 544 78
Q ss_pred cEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEEecCCC
Q 037573 204 QQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVN 283 (357)
Q Consensus 204 ~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~ 283 (357)
+.|+++++ .+..+|. .++ +|++|+++++. ++.+|. .+++|++|+++++ .++.+|. +.++|+.|++++ |
T Consensus 123 ~~L~Ls~N-~l~~lp~-~l~--~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N-~L~~lp~--l~~~L~~L~Ls~-N 190 (571)
T 3cvr_A 123 KHLDVDNN-QLTMLPE-LPA--LLEYINADNNQ-LTMLPE---LPTSLEVLSVRNN-QLTFLPE--LPESLEALDVST-N 190 (571)
T ss_dssp CEEECCSS-CCSCCCC-CCT--TCCEEECCSSC-CSCCCC---CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCS-S
T ss_pred CEEECCCC-cCCCCCC-cCc--cccEEeCCCCc-cCcCCC---cCCCcCEEECCCC-CCCCcch--hhCCCCEEECcC-C
Confidence 88888874 5666776 444 78888887744 666664 5677888888774 5666766 347888888887 5
Q ss_pred CceecccccccccCCc-------cEEEEeccCCCCCcCCCCCCCCCCcceEecccCc
Q 037573 284 IFKSLFQWGLHRLNSL-------KELIVNGEFPDMISFPQEEIGSTSLTRLWIRDFQ 333 (357)
Q Consensus 284 ~l~~~~~~~l~~l~~L-------~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~ 333 (357)
.++.++. +.. +| +.|++++ +.+..+|..++.+++|++|++++.+
T Consensus 191 ~L~~lp~--~~~--~L~~~~~~L~~L~Ls~--N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 191 LLESLPA--VPV--RNHHSEETEIFFRCRE--NRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp CCSSCCC--CC----------CCEEEECCS--SCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred CCCchhh--HHH--hhhcccccceEEecCC--CcceecCHHHhcCCCCCEEEeeCCc
Confidence 6766554 222 55 8888887 6777788766667788888887653
No 85
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.46 E-value=8.2e-13 Score=111.63 Aligned_cols=150 Identities=16% Similarity=0.228 Sum_probs=77.9
Q ss_pred cCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCC
Q 037573 120 QVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHK 199 (357)
Q Consensus 120 ~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~ 199 (357)
..+++|++|+++++. +..+| .+..+++|++|++++| .+..++. +.. +++|++|++++|.--...|..++.
T Consensus 41 ~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~-l~~------l~~L~~L~l~~n~l~~~~~~~l~~ 110 (197)
T 4ezg_A 41 AQMNSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNI-HATNYNP-ISG------LSNLERLRIMGKDVTSDKIPNLSG 110 (197)
T ss_dssp HHHHTCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESC-CCSCCGG-GTT------CTTCCEEEEECTTCBGGGSCCCTT
T ss_pred hhcCCccEEeccCCC-ccChH-HHhcCCCCCEEEccCC-CCCcchh-hhc------CCCCCEEEeECCccCcccChhhcC
Confidence 345666666666653 34555 3555566666666654 3333321 112 455555555553321122333333
Q ss_pred CCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEEe
Q 037573 200 LSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKI 279 (357)
Q Consensus 200 l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l 279 (357)
++ +|++|++++|.--...|..+..+++|++|++++|..+..++....+++|+.|++
T Consensus 111 l~------------------------~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l 166 (197)
T 4ezg_A 111 LT------------------------SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNI 166 (197)
T ss_dssp CT------------------------TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEEC
T ss_pred CC------------------------CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEEC
Confidence 33 555555555443333445556666666666666543555543333566666666
Q ss_pred cCCCCceecccccccccCCccEEEEec
Q 037573 280 TDVNIFKSLFQWGLHRLNSLKELIVNG 306 (357)
Q Consensus 280 ~~c~~l~~~~~~~l~~l~~L~~L~l~~ 306 (357)
++ +.++.++ .+..+++|++|++++
T Consensus 167 ~~-n~i~~~~--~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 167 QF-DGVHDYR--GIEDFPKLNQLYAFS 190 (197)
T ss_dssp TT-BCCCCCT--TGGGCSSCCEEEECB
T ss_pred CC-CCCcChH--HhccCCCCCEEEeeC
Confidence 66 3455443 356667777777776
No 86
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.45 E-value=4.7e-13 Score=120.28 Aligned_cols=173 Identities=18% Similarity=0.253 Sum_probs=132.2
Q ss_pred ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccC
Q 037573 119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELH 198 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~ 198 (357)
...+++|+.|+++++. +..++. +..+++|++|+++++ .+..++. +.. +++|+.|+++++ .+..+|. +.
T Consensus 42 ~~~l~~L~~L~l~~~~-i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-l~~------l~~L~~L~l~~n-~l~~~~~-l~ 109 (291)
T 1h6t_A 42 QNELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGN-KLTDIKP-LAN------LKNLGWLFLDEN-KVKDLSS-LK 109 (291)
T ss_dssp HHHHHTCCEEECTTSC-CCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTT------CTTCCEEECCSS-CCCCGGG-GT
T ss_pred hhhcCcccEEEccCCC-cccChh-HhcCCCCCEEEccCC-ccCCCcc-ccc------CCCCCEEECCCC-cCCCChh-hc
Confidence 4567899999999875 666765 788999999999985 5666665 334 889999999986 4666654 88
Q ss_pred CCCCccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceE
Q 037573 199 KLSRLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTIL 277 (357)
Q Consensus 199 ~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L 277 (357)
.+++|+.|+++++ .+..++. ..++ +|++|++++|. ++.+ ..+..+++|++|++++| .+..++....+++|+.|
T Consensus 110 ~l~~L~~L~L~~n-~i~~~~~l~~l~--~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L 183 (291)
T 1h6t_A 110 DLKKLKSLSLEHN-GISDINGLVHLP--QLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDN-QISDIVPLAGLTKLQNL 183 (291)
T ss_dssp TCTTCCEEECTTS-CCCCCGGGGGCT--TCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSS-CCCCCGGGTTCTTCCEE
T ss_pred cCCCCCEEECCCC-cCCCChhhcCCC--CCCEEEccCCc-CCcc-hhhccCCCCCEEEccCC-ccccchhhcCCCccCEE
Confidence 8999999999986 5555543 3344 89999998854 6666 57888999999999885 56666544557899999
Q ss_pred EecCCCCceecccccccccCCccEEEEeccCCCCCcC
Q 037573 278 KITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISF 314 (357)
Q Consensus 278 ~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l 314 (357)
++++ +.++.++. +..+++|+.|++++ +.+...
T Consensus 184 ~L~~-N~i~~l~~--l~~l~~L~~L~l~~--n~i~~~ 215 (291)
T 1h6t_A 184 YLSK-NHISDLRA--LAGLKNLDVLELFS--QECLNK 215 (291)
T ss_dssp ECCS-SCCCBCGG--GTTCTTCSEEEEEE--EEEECC
T ss_pred ECCC-CcCCCChh--hccCCCCCEEECcC--CcccCC
Confidence 9998 67777653 68899999999998 344443
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.44 E-value=1.9e-12 Score=113.66 Aligned_cols=152 Identities=18% Similarity=0.239 Sum_probs=108.8
Q ss_pred CcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhcccc-ccccccccccccccEEEeeCCCCCcccc-cccCCC
Q 037573 123 CRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLEL-SSVAEMFAIITSFENIMVNGCDNLKCLP-HELHKL 200 (357)
Q Consensus 123 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~-~~~L~~L~~l~~L~~L~l~~c~~l~~lp-~~l~~l 200 (357)
++++.|+++++..-...+..++.+++|++|+++++ .+..++.. +.. +++|+.|+++++. +..+| ..+..+
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~------l~~L~~L~L~~n~-l~~~~~~~~~~l 106 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDD------LTELGTLGLANNQ-LASLPLGVFDHL 106 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTT------CTTCCEEECTTSC-CCCCCTTTTTTC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhcc------CCcCCEEECCCCc-ccccChhHhccc
Confidence 67888999887643334446888899999999884 56555543 234 7889999998854 55665 345778
Q ss_pred CCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhHh-hhccCCcccceeeccCcCccccCCC--CCCCCcce
Q 037573 201 SRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALLN-GIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTI 276 (357)
Q Consensus 201 ~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~ 276 (357)
++|+.|+++++ .+..++...+ .+++|++|+++++ .++.++. .+..+++|++|+++++ .+..++.. ..+++|+.
T Consensus 107 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~ 183 (251)
T 3m19_A 107 TQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQT 183 (251)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCE
T ss_pred CCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCE
Confidence 89999999874 6777776432 2348999999875 4666655 5788889999999884 67777654 23678999
Q ss_pred EEecCCCCce
Q 037573 277 LKITDVNIFK 286 (357)
Q Consensus 277 L~l~~c~~l~ 286 (357)
|++++ +.+.
T Consensus 184 L~l~~-N~~~ 192 (251)
T 3m19_A 184 ITLFG-NQFD 192 (251)
T ss_dssp EECCS-CCBC
T ss_pred EEeeC-Ccee
Confidence 99988 4444
No 88
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.44 E-value=3.5e-13 Score=113.93 Aligned_cols=129 Identities=15% Similarity=0.171 Sum_probs=96.3
Q ss_pred cccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccccccc
Q 037573 118 VIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHEL 197 (357)
Q Consensus 118 ~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l 197 (357)
.+..+++|++|++++| .+..++ .+..+++|++|+++++.--...+..+.. +++|+.|++++|......|..+
T Consensus 61 ~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~------l~~L~~L~Ls~n~i~~~~~~~l 132 (197)
T 4ezg_A 61 GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSG------LTSLTLLDISHSAHDDSILTKI 132 (197)
T ss_dssp TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTT------CTTCCEEECCSSBCBGGGHHHH
T ss_pred HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcC------CCCCCEEEecCCccCcHhHHHH
Confidence 5788999999999998 456665 5889999999999996433334555445 8999999999976444567788
Q ss_pred CCCCCccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeecc
Q 037573 198 HKLSRLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQ 258 (357)
Q Consensus 198 ~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 258 (357)
..+++|+.|++++|..+..++. ..+ ++|++|++++|. ++.++ .+..+++|++|++++
T Consensus 133 ~~l~~L~~L~L~~n~~i~~~~~l~~l--~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 133 NTLPKVNSIDLSYNGAITDIMPLKTL--PELKSLNIQFDG-VHDYR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp TTCSSCCEEECCSCTBCCCCGGGGGC--SSCCEEECTTBC-CCCCT-TGGGCSSCCEEEECB
T ss_pred hhCCCCCEEEccCCCCccccHhhcCC--CCCCEEECCCCC-CcChH-HhccCCCCCEEEeeC
Confidence 8899999999998765666653 233 378888887754 55554 566777777777766
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.40 E-value=1.6e-12 Score=116.76 Aligned_cols=168 Identities=18% Similarity=0.248 Sum_probs=134.1
Q ss_pred cCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCcccCC-CC
Q 037573 143 LHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPE-RG 221 (357)
Q Consensus 143 ~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~-~~ 221 (357)
+..+++|++|++++| .+..++. +.. +++|+.|++++| .+..++. +..+++|+.|+++++ .+..++. ..
T Consensus 42 ~~~l~~L~~L~l~~~-~i~~~~~-~~~------l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~ 110 (291)
T 1h6t_A 42 QNELNSIDQIIANNS-DIKSVQG-IQY------LPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN-KVKDLSSLKD 110 (291)
T ss_dssp HHHHHTCCEEECTTS-CCCCCTT-GGG------CTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCGGGGTT
T ss_pred hhhcCcccEEEccCC-CcccChh-Hhc------CCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCC-cCCCChhhcc
Confidence 446889999999986 5666654 233 899999999996 4777776 889999999999985 5666654 34
Q ss_pred CCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEEecCCCCceecccccccccCCccE
Q 037573 222 LPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKE 301 (357)
Q Consensus 222 ~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~ 301 (357)
++ +|++|++++|. ++.+ ..+..+++|++|+++++ .++.++....+++|+.|++++ +.++.+++ +..+++|++
T Consensus 111 l~--~L~~L~L~~n~-i~~~-~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~-N~l~~~~~--l~~l~~L~~ 182 (291)
T 1h6t_A 111 LK--KLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLED-NQISDIVP--LAGLTKLQN 182 (291)
T ss_dssp CT--TCCEEECTTSC-CCCC-GGGGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCS-SCCCCCGG--GTTCTTCCE
T ss_pred CC--CCCEEECCCCc-CCCC-hhhcCCCCCCEEEccCC-cCCcchhhccCCCCCEEEccC-Cccccchh--hcCCCccCE
Confidence 44 99999999864 6666 46889999999999985 677665445578999999999 57777665 689999999
Q ss_pred EEEeccCCCCCcCCCCCCCCCCcceEecccC
Q 037573 302 LIVNGEFPDMISFPQEEIGSTSLTRLWIRDF 332 (357)
Q Consensus 302 L~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c 332 (357)
|++++ +.+..++. +..+++|++|+++++
T Consensus 183 L~L~~--N~i~~l~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 183 LYLSK--NHISDLRA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp EECCS--SCCCBCGG-GTTCTTCSEEEEEEE
T ss_pred EECCC--CcCCCChh-hccCCCCCEEECcCC
Confidence 99998 68888875 457889999999875
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.37 E-value=2.1e-12 Score=117.08 Aligned_cols=171 Identities=16% Similarity=0.181 Sum_probs=122.7
Q ss_pred cCCCcccEEeeccCcCccccc----cccCCCCCcCEEeecCCCcchhccc-cccccccccccccccEEEeeCCCCCcc--
Q 037573 120 QVLCRLKYLELIDCECLVNLP----QALHCLSSLTEITVAGCTKLVSFLE-LSSVAEMFAIITSFENIMVNGCDNLKC-- 192 (357)
Q Consensus 120 ~~l~~L~~L~l~~~~~l~~lp----~~~~~l~~L~~L~i~~c~~l~~~~~-~~~~L~~L~~l~~L~~L~l~~c~~l~~-- 192 (357)
..+++|++|+++++..-...+ ..+..+++|++|+++++. +..++. .+.. +++|++|+++++.....
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~------l~~L~~L~Ls~N~l~~~~~ 186 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRA------FPALTSLDLSDNPGLGERG 186 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCC------CTTCCEEECCSCTTCHHHH
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhcc------CCCCCEEECCCCCCccchh
Confidence 678899999999887443333 234578899999999864 555543 3335 88999999998753321
Q ss_pred cc--cccCCCCCccEEEecCCCCCcccCC------CCCCCCCcceEEeccCCcchhh-HhhhccC---CcccceeeccCc
Q 037573 193 LP--HELHKLSRLQQIEIRNCPSLVSFPE------RGLPSTNLTAVCVINCEKLEAL-LNGIHRL---TSHQQLTVEQCP 260 (357)
Q Consensus 193 lp--~~l~~l~~L~~L~l~~c~~l~~l~~------~~~~~~~L~~L~l~~c~~l~~l-~~~~~~l---~~L~~L~l~~c~ 260 (357)
++ ..+..+++|++|++++| .++.++. ..++ +|++|+++++. ++.+ |..+..+ ++|++|+++++
T Consensus 187 ~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~--~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N- 261 (310)
T 4glp_A 187 LMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGV--QPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFA- 261 (310)
T ss_dssp HHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTC--CCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSS-
T ss_pred hhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCC--CCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCC-
Confidence 32 22367889999999986 5554443 1234 89999998865 4544 6666665 69999999884
Q ss_pred CccccCCCCCCCCcceEEecCCCCceecccccccccCCccEEEEec
Q 037573 261 GIVAIPENDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNG 306 (357)
Q Consensus 261 ~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~ 306 (357)
.++.+|... +++|++|++++ +.++.++. +..+++|++|++++
T Consensus 262 ~l~~lp~~~-~~~L~~L~Ls~-N~l~~~~~--~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 262 GLEQVPKGL-PAKLRVLDLSS-NRLNRAPQ--PDELPEVDNLTLDG 303 (310)
T ss_dssp CCCSCCSCC-CSCCSCEECCS-CCCCSCCC--TTSCCCCSCEECSS
T ss_pred CCCchhhhh-cCCCCEEECCC-CcCCCCch--hhhCCCccEEECcC
Confidence 677887653 48999999998 67876643 57889999999998
No 91
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.36 E-value=2.1e-12 Score=127.37 Aligned_cols=167 Identities=19% Similarity=0.263 Sum_probs=116.3
Q ss_pred ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccC
Q 037573 119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELH 198 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~ 198 (357)
+..+++|+.|+++++. +..++. +..+++|+.|++++| .+..++. +.. +++|+.|++++| .+..+| .+.
T Consensus 39 ~~~L~~L~~L~l~~n~-i~~l~~-l~~l~~L~~L~Ls~N-~l~~~~~-l~~------l~~L~~L~Ls~N-~l~~l~-~l~ 106 (605)
T 1m9s_A 39 QNELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGN-KLTDIKP-LTN------LKNLGWLFLDEN-KIKDLS-SLK 106 (605)
T ss_dssp HHHHTTCCCCBCTTCC-CCCCTT-GGGCTTCCEEECTTS-CCCCCGG-GGG------CTTCCEEECCSS-CCCCCT-TST
T ss_pred hhcCCCCCEEECcCCC-CCCChH-HccCCCCCEEEeeCC-CCCCChh-hcc------CCCCCEEECcCC-CCCCCh-hhc
Confidence 4456778888887765 566664 777888888888875 4555554 223 788888888886 456655 577
Q ss_pred CCCCccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceE
Q 037573 199 KLSRLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTIL 277 (357)
Q Consensus 199 ~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L 277 (357)
.+++|+.|+++++ .+..++. ..++ +|+.|++++|. +..+ ..+..+++|+.|++++| .+..++....+++|+.|
T Consensus 107 ~l~~L~~L~Ls~N-~l~~l~~l~~l~--~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L 180 (605)
T 1m9s_A 107 DLKKLKSLSLEHN-GISDINGLVHLP--QLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDN-QISDIVPLAGLTKLQNL 180 (605)
T ss_dssp TCTTCCEEECTTS-CCCCCGGGGGCT--TCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSS-CCCCCGGGTTCTTCCEE
T ss_pred cCCCCCEEEecCC-CCCCCccccCCC--ccCEEECCCCc-cCCc-hhhcccCCCCEEECcCC-cCCCchhhccCCCCCEE
Confidence 7888888888875 4555543 3334 88888887754 5555 56778888888888875 45555444446788888
Q ss_pred EecCCCCceecccccccccCCccEEEEec
Q 037573 278 KITDVNIFKSLFQWGLHRLNSLKELIVNG 306 (357)
Q Consensus 278 ~l~~c~~l~~~~~~~l~~l~~L~~L~l~~ 306 (357)
++++ +.++.++ .+..+++|+.|++.+
T Consensus 181 ~Ls~-N~i~~l~--~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 181 YLSK-NHISDLR--ALAGLKNLDVLELFS 206 (605)
T ss_dssp ECCS-SCCCBCG--GGTTCTTCSEEECCS
T ss_pred ECcC-CCCCCCh--HHccCCCCCEEEccC
Confidence 8888 5666654 367788888888887
No 92
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.33 E-value=1.6e-13 Score=135.24 Aligned_cols=127 Identities=12% Similarity=0.024 Sum_probs=57.9
Q ss_pred CCCccEEEecCCCCCcccCC----CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeecc--------CcCccccCC
Q 037573 200 LSRLQQIEIRNCPSLVSFPE----RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQ--------CPGIVAIPE 267 (357)
Q Consensus 200 l~~L~~L~l~~c~~l~~l~~----~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~--------c~~l~~l~~ 267 (357)
+++|++|++++|. +..... ..++ +|++|++.+|..-..++.....+++|++|++.+ |..+.....
T Consensus 288 ~~~L~~L~L~~~~-l~~~~l~~~~~~~~--~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l 364 (594)
T 2p1m_B 288 CSRLTTLNLSYAT-VQSYDLVKLLCQCP--KLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL 364 (594)
T ss_dssp HTTCCEEECTTCC-CCHHHHHHHHTTCT--TCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH
T ss_pred hCCCCEEEccCCC-CCHHHHHHHHhcCC--CcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH
Confidence 4555555555554 321100 1233 566666665521122222233456666666633 222221100
Q ss_pred C---CCCCCcceEEecCCCCceeccccccc-ccCCccEEEEe-----ccCCCCCcCCCC------CCCCCCcceEeccc
Q 037573 268 N---DYPTNLTILKITDVNIFKSLFQWGLH-RLNSLKELIVN-----GEFPDMISFPQE------EIGSTSLTRLWIRD 331 (357)
Q Consensus 268 ~---~~~~~L~~L~l~~c~~l~~~~~~~l~-~l~~L~~L~l~-----~~c~~l~~l~~~------~~~~~sL~~L~l~~ 331 (357)
. ..+++|++|.++ |+.++......+. .+++|++|++. + |+.+...|.. ...+++|++|++++
T Consensus 365 ~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~-~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 365 VSVSMGCPKLESVLYF-CRQMTNAALITIARNRPNMTRFRLCIIEPKA-PDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp HHHHHHCTTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEESSTTC-CCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHhchhHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEeecccCCC-cccccCCchhhHHHHHHhhCCCccEEeecC
Confidence 0 014566666443 3555532222222 46778888887 5 6666644321 11234566665543
No 93
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.33 E-value=1.6e-12 Score=114.96 Aligned_cols=145 Identities=16% Similarity=0.227 Sum_probs=70.6
Q ss_pred cCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCcccCCCCC
Q 037573 143 LHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGL 222 (357)
Q Consensus 143 ~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~ 222 (357)
+..+++|++|+++++ .+..++ .+.. +++|+.|+++++ .+..+|. +..+++|+.|+++++ .+..++....
T Consensus 37 ~~~l~~L~~L~l~~n-~i~~l~-~l~~------l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~~ 105 (263)
T 1xeu_A 37 QKELSGVQNFNGDNS-NIQSLA-GMQF------FTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRN-RLKNLNGIPS 105 (263)
T ss_dssp HHHHTTCSEEECTTS-CCCCCT-TGGG------CTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSS-CCSCCTTCCC
T ss_pred hhhcCcCcEEECcCC-Ccccch-HHhh------CCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCC-ccCCcCcccc
Confidence 444555555555553 344443 1112 455555555553 3444444 555555555555543 3444443111
Q ss_pred CCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEEecCCCCceecccccccccCCccEE
Q 037573 223 PSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKEL 302 (357)
Q Consensus 223 ~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L 302 (357)
++|++|++++| .++.++ .+..+++|++|+++++ .++.++....+++|+.|++++ +.++.+ ..+..+++|+.|
T Consensus 106 --~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~l~~l~~L~~L~L~~-N~i~~~--~~l~~l~~L~~L 177 (263)
T 1xeu_A 106 --ACLSRLFLDNN-ELRDTD-SLIHLKNLEILSIRNN-KLKSIVMLGFLSKLEVLDLHG-NEITNT--GGLTRLKKVNWI 177 (263)
T ss_dssp --SSCCEEECCSS-CCSBSG-GGTTCTTCCEEECTTS-CCCBCGGGGGCTTCCEEECTT-SCCCBC--TTSTTCCCCCEE
T ss_pred --CcccEEEccCC-ccCCCh-hhcCcccccEEECCCC-cCCCChHHccCCCCCEEECCC-CcCcch--HHhccCCCCCEE
Confidence 25555655553 244443 3555556666666552 444444323345566666655 444444 224555666666
Q ss_pred EEec
Q 037573 303 IVNG 306 (357)
Q Consensus 303 ~l~~ 306 (357)
++++
T Consensus 178 ~l~~ 181 (263)
T 1xeu_A 178 DLTG 181 (263)
T ss_dssp EEEE
T ss_pred eCCC
Confidence 6655
No 94
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.33 E-value=1.4e-13 Score=135.66 Aligned_cols=152 Identities=11% Similarity=0.108 Sum_probs=84.8
Q ss_pred cccccEEEeeC----------CCCCcc--cccccCCCCCccEEEecCCCCCcccCC----CCCCCCCcceEEecc---CC
Q 037573 176 ITSFENIMVNG----------CDNLKC--LPHELHKLSRLQQIEIRNCPSLVSFPE----RGLPSTNLTAVCVIN---CE 236 (357)
Q Consensus 176 l~~L~~L~l~~----------c~~l~~--lp~~l~~l~~L~~L~l~~c~~l~~l~~----~~~~~~~L~~L~l~~---c~ 236 (357)
+++|++|++++ |..+.. ++.....+++|++|+++ |..+..... ..++ +|++|++.+ |+
T Consensus 341 ~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~~~~~--~L~~L~l~~~~~~n 417 (592)
T 3ogk_B 341 CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGTYLK--NLCDFRLVLLDREE 417 (592)
T ss_dssp CTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHHHHCC--SCCEEEEEECSCCS
T ss_pred CCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee-cCCccHHHHHHHHhhCC--CCcEEEEeecCCCc
Confidence 67788888874 555442 22223346777777773 444432211 1133 777787763 44
Q ss_pred cchh------hHhhhccCCcccceeeccCcC-cccc--CC-CCCCCCcceEEecCCCCcee-cccccccccCCccEEEEe
Q 037573 237 KLEA------LLNGIHRLTSHQQLTVEQCPG-IVAI--PE-NDYPTNLTILKITDVNIFKS-LFQWGLHRLNSLKELIVN 305 (357)
Q Consensus 237 ~l~~------l~~~~~~l~~L~~L~l~~c~~-l~~l--~~-~~~~~~L~~L~l~~c~~l~~-~~~~~l~~l~~L~~L~l~ 305 (357)
.++. ++..+..+++|++|++++|.. +..- .. ...+++|++|++++| .++. .....+..+++|++|+++
T Consensus 418 ~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~ 496 (592)
T 3ogk_B 418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMR 496 (592)
T ss_dssp CCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEE
T ss_pred cccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeecc
Confidence 5553 334456677788888866543 2110 00 012567888888774 3542 112224567788888888
Q ss_pred ccCCCCCc--CCCCCCCCCCcceEecccCc
Q 037573 306 GEFPDMIS--FPQEEIGSTSLTRLWIRDFQ 333 (357)
Q Consensus 306 ~~c~~l~~--l~~~~~~~~sL~~L~l~~c~ 333 (357)
+ |+ +.. ++.....+++|++|++++|+
T Consensus 497 ~-n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 497 G-CC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp S-CC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred C-CC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 8 76 432 22222245778888888775
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.32 E-value=6.9e-12 Score=123.67 Aligned_cols=170 Identities=17% Similarity=0.221 Sum_probs=133.8
Q ss_pred cCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCcccCCCCC
Q 037573 143 LHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGL 222 (357)
Q Consensus 143 ~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~ 222 (357)
+..+++|+.|+++++ .+..++. +.. +++|+.|++++| .+..+|. +..+++|+.|++++| .+..++. ..
T Consensus 39 ~~~L~~L~~L~l~~n-~i~~l~~-l~~------l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~-l~ 106 (605)
T 1m9s_A 39 QNELNSIDQIIANNS-DIKSVQG-IQY------LPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDEN-KIKDLSS-LK 106 (605)
T ss_dssp HHHHTTCCCCBCTTC-CCCCCTT-GGG------CTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCTT-ST
T ss_pred hhcCCCCCEEECcCC-CCCCChH-Hcc------CCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCC-CCCCChh-hc
Confidence 456889999999985 4666653 333 899999999996 4677776 889999999999986 5666653 22
Q ss_pred CCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceEEecCCCCceecccccccccCCccEE
Q 037573 223 PSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKEL 302 (357)
Q Consensus 223 ~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L 302 (357)
.+++|++|++++|. +..+ ..+..+++|+.|++++| .+..++....+++|+.|++++ +.++.+++ +..+++|++|
T Consensus 107 ~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~-N~l~~~~~--l~~l~~L~~L 180 (605)
T 1m9s_A 107 DLKKLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLED-NQISDIVP--LAGLTKLQNL 180 (605)
T ss_dssp TCTTCCEEECTTSC-CCCC-GGGGGCTTCSEEECCSS-CCCCCGGGGSCTTCSEEECCS-SCCCCCGG--GTTCTTCCEE
T ss_pred cCCCCCEEEecCCC-CCCC-ccccCCCccCEEECCCC-ccCCchhhcccCCCCEEECcC-CcCCCchh--hccCCCCCEE
Confidence 23499999998865 6666 46889999999999995 677665445578999999999 56776655 6899999999
Q ss_pred EEeccCCCCCcCCCCCCCCCCcceEecccCc
Q 037573 303 IVNGEFPDMISFPQEEIGSTSLTRLWIRDFQ 333 (357)
Q Consensus 303 ~l~~~c~~l~~l~~~~~~~~sL~~L~l~~c~ 333 (357)
+|++ +.+..++. +..+++|+.|++++++
T Consensus 181 ~Ls~--N~i~~l~~-l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 181 YLSK--NHISDLRA-LAGLKNLDVLELFSQE 208 (605)
T ss_dssp ECCS--SCCCBCGG-GTTCTTCSEEECCSEE
T ss_pred ECcC--CCCCCChH-HccCCCCCEEEccCCc
Confidence 9998 57888764 4478899999998763
No 96
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.31 E-value=2.1e-13 Score=134.32 Aligned_cols=123 Identities=13% Similarity=0.206 Sum_probs=53.6
Q ss_pred CCcccEEeeccCcCccccccccC-CCCCcCEEeecCCCcchh--ccccccccccccccccccEEEeeCCCCCc-----cc
Q 037573 122 LCRLKYLELIDCECLVNLPQALH-CLSSLTEITVAGCTKLVS--FLELSSVAEMFAIITSFENIMVNGCDNLK-----CL 193 (357)
Q Consensus 122 l~~L~~L~l~~~~~l~~lp~~~~-~l~~L~~L~i~~c~~l~~--~~~~~~~L~~L~~l~~L~~L~l~~c~~l~-----~l 193 (357)
+++|++|++++|..-...+..+. .+++|++|++.+|..+.. ++....+ +++|++|++++|. +. .+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~------~~~L~~L~L~~~~-i~~~~~~~l 176 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAAT------CRNLKELDLRESD-VDDVSGHWL 176 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHH------CTTCCEEECTTCE-EECCCGGGG
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHh------CCCCCEEeCcCCc-cCCcchHHH
Confidence 45555555555542222222222 355555555555543332 2221112 5555555555543 11 12
Q ss_pred ccccCCCCCccEEEecCCCCCcccCC-------CCCCCCCcceEEeccCCcchhhHhhhccCCccccee
Q 037573 194 PHELHKLSRLQQIEIRNCPSLVSFPE-------RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLT 255 (357)
Q Consensus 194 p~~l~~l~~L~~L~l~~c~~l~~l~~-------~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~ 255 (357)
+.....+++|+.|++++|. ..+.. ..++ +|++|++++|..++.++..+..+++|++|+
T Consensus 177 ~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~--~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~ 241 (594)
T 2p1m_B 177 SHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCP--NLKSLKLNRAVPLEKLATLLQRAPQLEELG 241 (594)
T ss_dssp GGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCT--TCCEEECCTTSCHHHHHHHHHHCTTCSEEE
T ss_pred HHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCC--CCcEEecCCCCcHHHHHHHHhcCCcceEcc
Confidence 2222234555555555543 11110 1122 555555555544444544455555555554
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.31 E-value=3.3e-13 Score=126.14 Aligned_cols=182 Identities=13% Similarity=0.071 Sum_probs=120.6
Q ss_pred ccCCCcccEEeeccCcCcc----ccccccCCCCCcCEEeecCCCcchhcc-cccccccccccc---------ccccEEEe
Q 037573 119 IQVLCRLKYLELIDCECLV----NLPQALHCLSSLTEITVAGCTKLVSFL-ELSSVAEMFAII---------TSFENIMV 184 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~----~lp~~~~~l~~L~~L~i~~c~~l~~~~-~~~~~L~~L~~l---------~~L~~L~l 184 (357)
+..+++|++|+++++..-. .+|..+..+++|++|++++|. +...+ ..+.. .+..+ ++|++|++
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~--~l~~l~~~~~~~~~~~L~~L~L 166 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIAR--ALQELAVNKKAKNAPPLRSIIC 166 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHH--HHHHHHHHHHHHTCCCCCEEEC
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHH--HHHHHhhhhhcccCCCCcEEEC
Confidence 4667899999999886433 367677888999999999864 33211 11110 00013 78999999
Q ss_pred eCCCCC-cccc---cccCCCCCccEEEecCCCCCc------ccCCCCCCCCCcceEEeccCCcc----hhhHhhhccCCc
Q 037573 185 NGCDNL-KCLP---HELHKLSRLQQIEIRNCPSLV------SFPERGLPSTNLTAVCVINCEKL----EALLNGIHRLTS 250 (357)
Q Consensus 185 ~~c~~l-~~lp---~~l~~l~~L~~L~l~~c~~l~------~l~~~~~~~~~L~~L~l~~c~~l----~~l~~~~~~l~~ 250 (357)
++|..- ..+| ..+..+++|+.|++++| .+. .++.....+++|++|++++|.-- ..+|..+..+++
T Consensus 167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~ 245 (386)
T 2ca6_A 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245 (386)
T ss_dssp CSSCCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred CCCCCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCC
Confidence 987532 2344 45667889999999986 444 12211122348999999887631 567778888999
Q ss_pred ccceeeccCcCcccc-----CCC---CCCCCcceEEecCCCCcee-----cccccccccCCccEEEEec
Q 037573 251 HQQLTVEQCPGIVAI-----PEN---DYPTNLTILKITDVNIFKS-----LFQWGLHRLNSLKELIVNG 306 (357)
Q Consensus 251 L~~L~l~~c~~l~~l-----~~~---~~~~~L~~L~l~~c~~l~~-----~~~~~l~~l~~L~~L~l~~ 306 (357)
|++|++++|. +... +.. +.+++|++|++++ +.++. ++......+++|++|++++
T Consensus 246 L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~-n~i~~~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 246 LRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQY-NEIELDAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp CCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCS-SCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred cCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcC-CcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence 9999998864 4432 221 2267899999998 55664 5443225679999999988
No 98
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.29 E-value=4.7e-11 Score=118.14 Aligned_cols=198 Identities=16% Similarity=0.044 Sum_probs=114.5
Q ss_pred CCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchh---ccccccccccccccccccEEEeeCCCCCccccccc
Q 037573 121 VLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVS---FLELSSVAEMFAIITSFENIMVNGCDNLKCLPHEL 197 (357)
Q Consensus 121 ~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~---~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l 197 (357)
.+..|+.+.+.++.. ...+. ...+++|+.+++++. .+.. .+..... +.+|+.+++..+. ...++..+
T Consensus 347 ~l~~L~~l~l~~n~~-~~~~~-~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~------~~~L~~L~~~~~~-~~~~~~~~ 416 (635)
T 4g8a_A 347 KLKSLKRLTFTSNKG-GNAFS-EVDLPSLEFLDLSRN-GLSFKGCCSQSDFG------TISLKYLDLSFNG-VITMSSNF 416 (635)
T ss_dssp BCTTCCEEEEESCCS-CCBCC-CCBCTTCCEEECCSS-CCBEEEECCHHHHS------CSCCCEEECCSCS-EEEECSCC
T ss_pred cchhhhhcccccccC-CCCcc-cccccccccchhhcc-ccccccccccchhh------hhhhhhhhccccc-cccccccc
Confidence 456777777766542 22222 346777888877763 2221 1212223 5667777776643 34445556
Q ss_pred CCCCCccEEEecCCCCCcccCCCC-CCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--CCCCCc
Q 037573 198 HKLSRLQQIEIRNCPSLVSFPERG-LPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNL 274 (357)
Q Consensus 198 ~~l~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L 274 (357)
..+++|+.+++.++......+... ..+++++.++++.+..-...+..+..+++|+.|+++++.....++.. ..+++|
T Consensus 417 ~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L 496 (635)
T 4g8a_A 417 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 496 (635)
T ss_dssp TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred cccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcccc
Confidence 667777777776654333333211 12236777777665433334455666777777777775544433222 335677
Q ss_pred ceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCC-CCCCCCcceEeccc
Q 037573 275 TILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQE-EIGSTSLTRLWIRD 331 (357)
Q Consensus 275 ~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~-~~~~~sL~~L~l~~ 331 (357)
+.|++++ +.++.+++..+..+++|++|++++ +++..++.. +..+++|++|++++
T Consensus 497 ~~L~Ls~-N~L~~l~~~~f~~l~~L~~L~Ls~--N~l~~l~~~~~~~l~~L~~L~Ls~ 551 (635)
T 4g8a_A 497 TFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMSH--NNFFSLDTFPYKCLNSLQVLDYSL 551 (635)
T ss_dssp CEEECTT-SCCCEECTTTTTTCTTCCEEECTT--SCCCBCCCGGGTTCTTCCEEECTT
T ss_pred CEEECCC-CccCCcChHHHcCCCCCCEEECCC--CcCCCCChhHHhCCCCCCEEECCC
Confidence 7777777 456666655567777777777776 566666543 33466777777764
No 99
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.29 E-value=9.8e-13 Score=129.58 Aligned_cols=178 Identities=11% Similarity=0.039 Sum_probs=94.2
Q ss_pred ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccC
Q 037573 119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELH 198 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~ 198 (357)
+..+++|+.|++++|. +..+|..+..+++|++|.++++......+.. ...+..+++|+.|+++++ ....+|..+.
T Consensus 216 ~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~l~~~~~L~~L~l~~~-~~~~l~~~~~ 290 (592)
T 3ogk_B 216 ARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEK---YMNLVFPRKLCRLGLSYM-GPNEMPILFP 290 (592)
T ss_dssp HHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTS---SSCCCCCTTCCEEEETTC-CTTTGGGGGG
T ss_pred HhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHH---HHHhhccccccccCcccc-chhHHHHHHh
Confidence 4457788888888865 4456666777788888877653322111111 011111566777777663 3455566666
Q ss_pred CCCCccEEEecCCCCCcccCC----CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeecc----------CcCccc
Q 037573 199 KLSRLQQIEIRNCPSLVSFPE----RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQ----------CPGIVA 264 (357)
Q Consensus 199 ~l~~L~~L~l~~c~~l~~l~~----~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~----------c~~l~~ 264 (357)
.+++|++|++++|. +..... ..++ +|++|++.++..-..++.....+++|++|++++ |+.++.
T Consensus 291 ~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~--~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~ 367 (592)
T 3ogk_B 291 FAAQIRKLDLLYAL-LETEDHCTLIQKCP--NLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ 367 (592)
T ss_dssp GGGGCCEEEETTCC-CCHHHHHHHHTTCT--TCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH
T ss_pred hcCCCcEEecCCCc-CCHHHHHHHHHhCc--CCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCH
Confidence 67777777777765 321111 2334 677777764322233333445566677777763 555442
Q ss_pred cC--C-CCCCCCcceEEecCCCCceecccccccc-cCCccEEEEe
Q 037573 265 IP--E-NDYPTNLTILKITDVNIFKSLFQWGLHR-LNSLKELIVN 305 (357)
Q Consensus 265 l~--~-~~~~~~L~~L~l~~c~~l~~~~~~~l~~-l~~L~~L~l~ 305 (357)
.. . ...+++|++|++ +|+.++......+.. +++|++|++.
T Consensus 368 ~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 368 RGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp HHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred HHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 11 0 011456666666 335554322222332 5666666665
No 100
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.28 E-value=3.9e-13 Score=125.60 Aligned_cols=102 Identities=15% Similarity=0.097 Sum_probs=48.1
Q ss_pred CcceEEeccCCcch------hhHhhhccCCcccceeeccCcCc-----cccCCC-CCCCCcceEEecCCCCceec----c
Q 037573 226 NLTAVCVINCEKLE------ALLNGIHRLTSHQQLTVEQCPGI-----VAIPEN-DYPTNLTILKITDVNIFKSL----F 289 (357)
Q Consensus 226 ~L~~L~l~~c~~l~------~l~~~~~~l~~L~~L~l~~c~~l-----~~l~~~-~~~~~L~~L~l~~c~~l~~~----~ 289 (357)
+|++|++++|. ++ .++..+..+++|++|++++|. + ..++.. ..+++|++|++++| .++.. .
T Consensus 188 ~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l 264 (386)
T 2ca6_A 188 LLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDC-LLSARGAAAV 264 (386)
T ss_dssp TCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTC-CCCHHHHHHH
T ss_pred CcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCC-CCchhhHHHH
Confidence 56666666543 22 122255556666666666543 3 222221 12456666666663 34321 0
Q ss_pred ccccc--ccCCccEEEEeccCCCCCc-----CCCCC-CCCCCcceEecccC
Q 037573 290 QWGLH--RLNSLKELIVNGEFPDMIS-----FPQEE-IGSTSLTRLWIRDF 332 (357)
Q Consensus 290 ~~~l~--~l~~L~~L~l~~~c~~l~~-----l~~~~-~~~~sL~~L~l~~c 332 (357)
...+. .+++|++|++++ +.+.. +|..+ ..+++|++|+++++
T Consensus 265 ~~~l~~~~~~~L~~L~L~~--n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 265 VDAFSKLENIGLQTLRLQY--NEIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp HHHHHTCSSCCCCEEECCS--SCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred HHHHhhccCCCeEEEECcC--CcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 11122 256666666665 34443 44433 12455666665554
No 101
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.28 E-value=2.8e-14 Score=139.81 Aligned_cols=193 Identities=14% Similarity=0.048 Sum_probs=127.5
Q ss_pred cCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcc-------------hhccccccccccccccccccEEE-ee
Q 037573 120 QVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKL-------------VSFLELSSVAEMFAIITSFENIM-VN 185 (357)
Q Consensus 120 ~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l-------------~~~~~~~~~L~~L~~l~~L~~L~-l~ 185 (357)
..+++|+.|+++++. ++.+|.+++.+++|+.|+++++..+ ...|..+.. +++|+.|+ ++
T Consensus 346 ~~~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~------l~~L~~L~~l~ 418 (567)
T 1dce_A 346 ATDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY------FSTLKAVDPMR 418 (567)
T ss_dssp STTTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHH------HHHHHHHCGGG
T ss_pred ccCccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHH------HHhcccCcchh
Confidence 457888889998865 6788988888999998888654311 122222223 45555555 22
Q ss_pred CCCCCccccc------ccCC--CCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeec
Q 037573 186 GCDNLKCLPH------ELHK--LSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVE 257 (357)
Q Consensus 186 ~c~~l~~lp~------~l~~--l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~ 257 (357)
. ..+..++. .+.. ...|+.|+++++ .++.+|. ...+++|+.|+++++ .++.+|..++.+++|++|+++
T Consensus 419 ~-n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls 494 (567)
T 1dce_A 419 A-AYLDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQAS 494 (567)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECC
T ss_pred h-cccchhhhhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECC
Confidence 1 11111111 0111 135788888874 6677775 223348899999875 467888888889999999998
Q ss_pred cCcCccccCCCCCCCCcceEEecCCCCceecc-cccccccCCccEEEEeccCCCCCcCCCCCC----CCCCcceE
Q 037573 258 QCPGIVAIPENDYPTNLTILKITDVNIFKSLF-QWGLHRLNSLKELIVNGEFPDMISFPQEEI----GSTSLTRL 327 (357)
Q Consensus 258 ~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~-~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~----~~~sL~~L 327 (357)
+ +.++.+|..+.+++|+.|++++ +.++.+. +..+..+++|+.|++++ +.+..+|.... .+|+|+.|
T Consensus 495 ~-N~l~~lp~l~~l~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~--N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 495 D-NALENVDGVANLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQG--NSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp S-SCCCCCGGGTTCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTT--SGGGGSSSCTTHHHHHCTTCSEE
T ss_pred C-CCCCCCcccCCCCCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEecC--CcCCCCccHHHHHHHHCcccCcc
Confidence 8 4677777445578899999988 6777664 44578889999999988 66777665432 14555555
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.27 E-value=4e-11 Score=117.15 Aligned_cols=162 Identities=21% Similarity=0.266 Sum_probs=127.1
Q ss_pred CCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCC
Q 037573 122 LCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLS 201 (357)
Q Consensus 122 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~ 201 (357)
+++|++|+++++. +..+| ..+++|++|+++++ .+..+|. + ..+|+.|+++++ .+..+|. .++
T Consensus 79 ~~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l--------~~~L~~L~Ls~N-~l~~lp~---~l~ 140 (571)
T 3cvr_A 79 PPQITVLEITQNA-LISLP---ELPASLEYLDACDN-RLSTLPE-L--------PASLKHLDVDNN-QLTMLPE---LPA 140 (571)
T ss_dssp CTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSS-CCSCCCC-C--------CTTCCEEECCSS-CCSCCCC---CCT
T ss_pred cCCCCEEECcCCC-Ccccc---cccCCCCEEEccCC-CCCCcch-h--------hcCCCEEECCCC-cCCCCCC---cCc
Confidence 4789999999985 67888 46899999999985 6777777 3 348999999996 5777887 689
Q ss_pred CccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCc-------
Q 037573 202 RLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNL------- 274 (357)
Q Consensus 202 ~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L------- 274 (357)
+|+.|+++++ .++.+|. .++ +|++|++++|. ++.+|. +. ++|++|+++++ .++.+|. +..+|
T Consensus 141 ~L~~L~Ls~N-~l~~lp~-~l~--~L~~L~Ls~N~-L~~lp~-l~--~~L~~L~Ls~N-~L~~lp~--~~~~L~~~~~~L 209 (571)
T 3cvr_A 141 LLEYINADNN-QLTMLPE-LPT--SLEVLSVRNNQ-LTFLPE-LP--ESLEALDVSTN-LLESLPA--VPVRNHHSEETE 209 (571)
T ss_dssp TCCEEECCSS-CCSCCCC-CCT--TCCEEECCSSC-CSCCCC-CC--TTCCEEECCSS-CCSSCCC--CC--------CC
T ss_pred cccEEeCCCC-ccCcCCC-cCC--CcCEEECCCCC-CCCcch-hh--CCCCEEECcCC-CCCchhh--HHHhhhcccccc
Confidence 9999999985 6777876 444 99999998864 777877 55 89999999984 7888887 44578
Q ss_pred ceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCC
Q 037573 275 TILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFP 315 (357)
Q Consensus 275 ~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~ 315 (357)
+.|++++ |.++.++.. +..+++|+.|++++ ++--+.+|
T Consensus 210 ~~L~Ls~-N~l~~lp~~-l~~l~~L~~L~L~~-N~l~~~~p 247 (571)
T 3cvr_A 210 IFFRCRE-NRITHIPEN-ILSLDPTCTIILED-NPLSSRIR 247 (571)
T ss_dssp EEEECCS-SCCCCCCGG-GGGSCTTEEEECCS-SSCCHHHH
T ss_pred eEEecCC-CcceecCHH-HhcCCCCCEEEeeC-CcCCCcCH
Confidence 9999999 788888765 66799999999998 54333333
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.22 E-value=1e-10 Score=101.18 Aligned_cols=148 Identities=17% Similarity=0.265 Sum_probs=103.9
Q ss_pred cccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccc-cccccccccccccccEEEeeCCCCCcccccc-cCCCC
Q 037573 124 RLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLE-LSSVAEMFAIITSFENIMVNGCDNLKCLPHE-LHKLS 201 (357)
Q Consensus 124 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~-~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~-l~~l~ 201 (357)
..+.++.++. .++.+|..+ .++|++|+++++ .+..++. .+.. +++|+.|+++++ .+..+|.. +..++
T Consensus 20 s~~~v~c~~~-~l~~ip~~~--~~~L~~L~Ls~n-~i~~~~~~~~~~------l~~L~~L~L~~N-~l~~i~~~~~~~l~ 88 (229)
T 3e6j_A 20 SGTTVDCRSK-RHASVPAGI--PTNAQILYLHDN-QITKLEPGVFDS------LINLKELYLGSN-QLGALPVGVFDSLT 88 (229)
T ss_dssp ETTEEECTTS-CCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTT------CTTCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred eCCEeEccCC-CcCccCCCC--CCCCCEEEcCCC-ccCccCHHHhhC------ccCCcEEECCCC-CCCCcChhhcccCC
Confidence 4556777664 467788654 378999999885 4555533 3335 788999999885 46777654 57788
Q ss_pred CccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--CCCCCcceEE
Q 037573 202 RLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILK 278 (357)
Q Consensus 202 ~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~ 278 (357)
+|+.|+++++ .+..++...+ .+++|++|+++++ .++.+|..+..+++|++|++++ +.+..++.. ..+++|+.|+
T Consensus 89 ~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 89 QLTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAY 165 (229)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEE
T ss_pred CcCEEECCCC-cCCccChhHhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEE
Confidence 8999998874 6777765332 2348888888774 4778888888888888888887 467777654 2367888888
Q ss_pred ecCCCCce
Q 037573 279 ITDVNIFK 286 (357)
Q Consensus 279 l~~c~~l~ 286 (357)
+++ |.+.
T Consensus 166 l~~-N~~~ 172 (229)
T 3e6j_A 166 LFG-NPWD 172 (229)
T ss_dssp CTT-SCBC
T ss_pred eeC-CCcc
Confidence 887 4443
No 104
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.21 E-value=1.8e-12 Score=123.64 Aligned_cols=209 Identities=18% Similarity=0.201 Sum_probs=115.7
Q ss_pred cccccCCCcccEEeeccCcCccc----cccc-cCCCCCcCEEeecCCCcchh-----ccccc---cccccccc-------
Q 037573 116 TSVIQVLCRLKYLELIDCECLVN----LPQA-LHCLSSLTEITVAGCTKLVS-----FLELS---SVAEMFAI------- 175 (357)
Q Consensus 116 ~~~~~~l~~L~~L~l~~~~~l~~----lp~~-~~~l~~L~~L~i~~c~~l~~-----~~~~~---~~L~~L~~------- 175 (357)
+..+..+++|++|+++++..-.. +... ....++|++|++++|. +.. ++... .+|+.|++
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 184 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNNDINE 184 (461)
T ss_dssp HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCCcch
Confidence 34467788999999988763211 1111 2235568888887763 221 12211 13333332
Q ss_pred -------------cccccEEEeeCCCCCcc-----cccccCCCCCccEEEecCCCCCcccC-----CC-CCCCCCcceEE
Q 037573 176 -------------ITSFENIMVNGCDNLKC-----LPHELHKLSRLQQIEIRNCPSLVSFP-----ER-GLPSTNLTAVC 231 (357)
Q Consensus 176 -------------l~~L~~L~l~~c~~l~~-----lp~~l~~l~~L~~L~l~~c~~l~~l~-----~~-~~~~~~L~~L~ 231 (357)
.++|+.|++++|. +.. ++..+..+++|++|+++++ .+.... .. ..+.++|++|+
T Consensus 185 ~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~ 262 (461)
T 1z7x_W 185 AGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLW 262 (461)
T ss_dssp HHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred HHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEE
Confidence 2377777777764 332 4666667788888888876 343321 10 00124888999
Q ss_pred eccCCcchh-----hHhhhccCCcccceeeccCcCcccc-----CCC--CCCCCcceEEecCCCCceecc----cccccc
Q 037573 232 VINCEKLEA-----LLNGIHRLTSHQQLTVEQCPGIVAI-----PEN--DYPTNLTILKITDVNIFKSLF----QWGLHR 295 (357)
Q Consensus 232 l~~c~~l~~-----l~~~~~~l~~L~~L~l~~c~~l~~l-----~~~--~~~~~L~~L~l~~c~~l~~~~----~~~l~~ 295 (357)
+++|. ++. ++..+..+++|++|+++++ .+... ... ...++|++|++++|. ++... ...+..
T Consensus 263 L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~ 339 (461)
T 1z7x_W 263 IWECG-ITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQ 339 (461)
T ss_dssp CTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHH
T ss_pred CcCCC-CCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhh
Confidence 88874 444 6677777888899988885 34321 110 112577777777743 44221 112445
Q ss_pred cCCccEEEEeccCCCCCcCC-----CCCC-CCCCcceEecccC
Q 037573 296 LNSLKELIVNGEFPDMISFP-----QEEI-GSTSLTRLWIRDF 332 (357)
Q Consensus 296 l~~L~~L~l~~~c~~l~~l~-----~~~~-~~~sL~~L~l~~c 332 (357)
+++|++|++++ | .+...+ .... ..++|++|++++|
T Consensus 340 ~~~L~~L~Ls~-n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 340 NRFLLELQISN-N-RLEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp CSSCCEEECCS-S-BCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred CCCccEEEccC-C-ccccccHHHHHHHHcCCCCceEEEECCCC
Confidence 67777777776 3 443321 1000 1346666666654
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.21 E-value=1.6e-10 Score=99.29 Aligned_cols=143 Identities=15% Similarity=0.227 Sum_probs=92.1
Q ss_pred CEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccccc-ccCCCCCccEEEecCCCCCcccCC-CCCCCCCc
Q 037573 150 TEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPH-ELHKLSRLQQIEIRNCPSLVSFPE-RGLPSTNL 227 (357)
Q Consensus 150 ~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L 227 (357)
+.++.++ ..+..+|..+ .++|+.|+++++ .+..+|. .+..+++|+.|+++++ .+..++. ....+++|
T Consensus 14 ~~v~c~~-~~l~~iP~~l--------~~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L 82 (220)
T 2v9t_B 14 NIVDCRG-KGLTEIPTNL--------PETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSL 82 (220)
T ss_dssp TEEECTT-SCCSSCCSSC--------CTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSC
T ss_pred CEEEcCC-CCcCcCCCcc--------CcCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCC
Confidence 4566665 4566777653 457888888875 4566654 5667788888888874 4555533 22223477
Q ss_pred ceEEeccCCcchhhHhh-hccCCcccceeeccCcCccccCCC--CCCCCcceEEecCCCCceecccccccccCCccEEEE
Q 037573 228 TAVCVINCEKLEALLNG-IHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIV 304 (357)
Q Consensus 228 ~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l 304 (357)
++|+++++ .++.+|.. +..+++|++|++++ +.+..++.. ..+++|+.|++++ +.++.+++..+..+++|++|++
T Consensus 83 ~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 83 NSLVLYGN-KITELPKSLFEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEEC
T ss_pred CEEECCCC-cCCccCHhHccCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEe
Confidence 88888764 45666544 46677788888777 356655443 2356777777777 6676666555667777777777
Q ss_pred ec
Q 037573 305 NG 306 (357)
Q Consensus 305 ~~ 306 (357)
.+
T Consensus 160 ~~ 161 (220)
T 2v9t_B 160 AQ 161 (220)
T ss_dssp CS
T ss_pred CC
Confidence 76
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.20 E-value=7.8e-11 Score=104.12 Aligned_cols=150 Identities=15% Similarity=0.166 Sum_probs=116.1
Q ss_pred ccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccC
Q 037573 119 IQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELH 198 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~ 198 (357)
+..+++|++|+++++. +..++ .+..+++|++|+++++ .+..++. +.. +++|+.|+++++ .+..+|...
T Consensus 37 ~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~------l~~L~~L~L~~N-~l~~l~~~~- 104 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKD------LTKLEELSVNRN-RLKNLNGIP- 104 (263)
T ss_dssp HHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTT------CSSCCEEECCSS-CCSCCTTCC-
T ss_pred hhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCC-ccCCChh-hcc------CCCCCEEECCCC-ccCCcCccc-
Confidence 5668999999999984 67787 5888999999999985 5777766 444 899999999996 567776533
Q ss_pred CCCCccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCCCCCcceE
Q 037573 199 KLSRLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDYPTNLTIL 277 (357)
Q Consensus 199 ~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L 277 (357)
. ++|+.|+++++ .+..++. ..++ +|++|+++++. ++.++ .+..+++|++|+++++ .+..++....+++|+.|
T Consensus 105 ~-~~L~~L~L~~N-~l~~~~~l~~l~--~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N-~i~~~~~l~~l~~L~~L 177 (263)
T 1xeu_A 105 S-ACLSRLFLDNN-ELRDTDSLIHLK--NLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGN-EITNTGGLTRLKKVNWI 177 (263)
T ss_dssp C-SSCCEEECCSS-CCSBSGGGTTCT--TCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTS-CCCBCTTSTTCCCCCEE
T ss_pred c-CcccEEEccCC-ccCCChhhcCcc--cccEEECCCCc-CCCCh-HHccCCCCCEEECCCC-cCcchHHhccCCCCCEE
Confidence 3 89999999985 6666653 3444 99999998854 77775 6888999999999984 67766444557899999
Q ss_pred EecCCCCceec
Q 037573 278 KITDVNIFKSL 288 (357)
Q Consensus 278 ~l~~c~~l~~~ 288 (357)
++++ +.+...
T Consensus 178 ~l~~-N~~~~~ 187 (263)
T 1xeu_A 178 DLTG-QKCVNE 187 (263)
T ss_dssp EEEE-EEEECC
T ss_pred eCCC-CcccCC
Confidence 9998 555533
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.19 E-value=7.6e-11 Score=109.10 Aligned_cols=166 Identities=17% Similarity=0.229 Sum_probs=88.4
Q ss_pred cEEeeccCcCccccccccCCCCCcCEEeecCCCcchhcccccc--ccccccccccccEEEeeCCCCCcccc-cccCCCCC
Q 037573 126 KYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSS--VAEMFAIITSFENIMVNGCDNLKCLP-HELHKLSR 202 (357)
Q Consensus 126 ~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~--~L~~L~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~ 202 (357)
+.+++++. .+..+|..+ .+.++.|++++ ..+..++...+ . +++|+.|+++++ .+..++ ..+..+++
T Consensus 21 ~~l~c~~~-~l~~iP~~~--~~~l~~L~Ls~-N~l~~l~~~~~~~~------l~~L~~L~L~~N-~i~~i~~~~~~~l~~ 89 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQSL--PSYTALLDLSH-NNLSRLRAEWTPTR------LTNLHSLLLSHN-HLNFISSEAFVPVPN 89 (361)
T ss_dssp TEEECCSS-CCSSCCSSC--CTTCSEEECCS-SCCCEECTTSSSSC------CTTCCEEECCSS-CCCEECTTTTTTCTT
T ss_pred CEEEeCCC-CcCccCccC--CCCCCEEECCC-CCCCccChhhhhhc------ccccCEEECCCC-cCCccChhhccCCCC
Confidence 34455443 345555433 23466666666 34555544332 3 566666666664 344444 33556666
Q ss_pred ccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhh-HhhhccCCcccceeeccCcCccccCCCC-----CCCCcc
Q 037573 203 LQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEAL-LNGIHRLTSHQQLTVEQCPGIVAIPEND-----YPTNLT 275 (357)
Q Consensus 203 L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~-----~~~~L~ 275 (357)
|+.|+++++ .+..++...+ .+++|++|+++++. +..+ +..+..+++|++|++++ +.+..+|... .+++|+
T Consensus 90 L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 90 LRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLM 166 (361)
T ss_dssp CCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCC
T ss_pred CCEEECCCC-cCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCC
Confidence 666666653 4555544221 12366666666643 3333 44566666666666666 3555555432 256666
Q ss_pred eEEecCCCCceecccccccccCC--ccEEEEec
Q 037573 276 ILKITDVNIFKSLFQWGLHRLNS--LKELIVNG 306 (357)
Q Consensus 276 ~L~l~~c~~l~~~~~~~l~~l~~--L~~L~l~~ 306 (357)
.|++++ +.++.++...+..++. ++.|++.+
T Consensus 167 ~L~L~~-N~l~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 167 LLDLSS-NKLKKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp EEECCS-SCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred EEECCC-CCCCccCHHHhhhccHhhcceEEecC
Confidence 667666 5566555444555554 35666665
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.18 E-value=2.5e-10 Score=98.03 Aligned_cols=142 Identities=11% Similarity=0.162 Sum_probs=73.3
Q ss_pred cEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccc-c-ccccccccccccccEEEeeCCCCCccccc-ccCCCCC
Q 037573 126 KYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLE-L-SSVAEMFAIITSFENIMVNGCDNLKCLPH-ELHKLSR 202 (357)
Q Consensus 126 ~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~-~-~~~L~~L~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~ 202 (357)
+.++++++. ++.+|..+ .+.+++|+++++ .+..++. . +.. +++|+.|+++++ .+..++. .+..+++
T Consensus 14 ~~l~~s~n~-l~~iP~~~--~~~~~~L~L~~N-~l~~~~~~~~~~~------l~~L~~L~L~~N-~i~~i~~~~~~~l~~ 82 (220)
T 2v70_A 14 TTVDCSNQK-LNKIPEHI--PQYTAELRLNNN-EFTVLEATGIFKK------LPQLRKINFSNN-KITDIEEGAFEGASG 82 (220)
T ss_dssp TEEECCSSC-CSSCCSCC--CTTCSEEECCSS-CCCEECCCCCGGG------CTTCCEEECCSS-CCCEECTTTTTTCTT
T ss_pred CEeEeCCCC-cccCccCC--CCCCCEEEcCCC-cCCccCchhhhcc------CCCCCEEECCCC-cCCEECHHHhCCCCC
Confidence 456666543 55666543 234567777763 4554432 1 223 666777777664 3455543 4566666
Q ss_pred ccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhh-HhhhccCCcccceeeccCcCccccCCC--CCCCCcceEE
Q 037573 203 LQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEAL-LNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILK 278 (357)
Q Consensus 203 L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~ 278 (357)
|+.|+++++ .+..++...+ .+++|++|+++++. ++.+ |..+..+++|++|++++ +.++.++.. ..+++|++|+
T Consensus 83 L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 83 VNEILLTSN-RLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp CCEEECCSS-CCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEE
T ss_pred CCEEECCCC-ccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEE
Confidence 666666653 4444443211 12266666665543 3333 34455556666666655 344444222 2245555666
Q ss_pred ecC
Q 037573 279 ITD 281 (357)
Q Consensus 279 l~~ 281 (357)
+++
T Consensus 160 L~~ 162 (220)
T 2v70_A 160 LLA 162 (220)
T ss_dssp CCS
T ss_pred ecC
Confidence 655
No 109
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.17 E-value=1e-10 Score=95.84 Aligned_cols=134 Identities=15% Similarity=0.152 Sum_probs=94.9
Q ss_pred CCcccEEeeccCcCc-cccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcc-cccccCC
Q 037573 122 LCRLKYLELIDCECL-VNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKC-LPHELHK 199 (357)
Q Consensus 122 l~~L~~L~l~~~~~l-~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~-lp~~l~~ 199 (357)
.++|+.|++++|..- ..+|..+..+++|++|++++|. +..+ ..+.. +++|+.|++++|. +.. +|..+..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~------l~~L~~L~Ls~N~-l~~~~~~~~~~ 93 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPK------LPKLKKLELSENR-IFGGLDMLAEK 93 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCC------CSSCCEEEEESCC-CCSCCCHHHHH
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhcc------CCCCCEEECcCCc-CchHHHHHHhh
Confidence 478999999988632 2688777888999999999864 6555 33334 8889999999865 444 6666666
Q ss_pred CCCccEEEecCCCCCcccC--CCCCCCCCcceEEeccCCcchhhHh----hhccCCcccceeeccCcCccccCC
Q 037573 200 LSRLQQIEIRNCPSLVSFP--ERGLPSTNLTAVCVINCEKLEALLN----GIHRLTSHQQLTVEQCPGIVAIPE 267 (357)
Q Consensus 200 l~~L~~L~l~~c~~l~~l~--~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~l~~L~~L~l~~c~~l~~l~~ 267 (357)
+++|+.|+++++ .+..++ .....+++|++|+++++. +..+|. .+..+++|++|++++| ....+|.
T Consensus 94 l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 94 LPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp CTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred CCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 889999999875 566654 211223488888888754 566654 6778888888888886 3444443
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.16 E-value=5e-10 Score=95.08 Aligned_cols=160 Identities=22% Similarity=0.223 Sum_probs=115.0
Q ss_pred CEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccc-cCCCCCccEEEecCCCCCcccCCCCC-CCCCc
Q 037573 150 TEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHE-LHKLSRLQQIEIRNCPSLVSFPERGL-PSTNL 227 (357)
Q Consensus 150 ~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~~l~~l~~~~~-~~~~L 227 (357)
+.++.++ ..+..+|... .++|+.|+++++ .+..+|.. +..+++|+.|+++++ .++.++...+ .+++|
T Consensus 10 ~~v~c~~-~~l~~~p~~~--------~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L 78 (208)
T 2o6s_A 10 TTVECYS-QGRTSVPTGI--------PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSL 78 (208)
T ss_dssp TEEECCS-SCCSSCCSCC--------CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred CEEEecC-CCccCCCCCC--------CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCc
Confidence 4555555 4566677554 568999999986 46666654 678999999999984 6777776432 23599
Q ss_pred ceEEeccCCcchhhHh-hhccCCcccceeeccCcCccccCCC--CCCCCcceEEecCCCCceecccccccccCCccEEEE
Q 037573 228 TAVCVINCEKLEALLN-GIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIV 304 (357)
Q Consensus 228 ~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l 304 (357)
++|+++++. ++.++. .+..+++|++|+++++ .++.++.. ..+++|++|++++ +.++.++...+..+++|++|++
T Consensus 79 ~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l 155 (208)
T 2o6s_A 79 TYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWL 155 (208)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEEC
T ss_pred CEEECCCCc-CCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEe
Confidence 999998864 666654 4688999999999884 67777764 3378999999998 6787777666778899999999
Q ss_pred eccCCCCCcCCCCCCCCCCcceEeccc
Q 037573 305 NGEFPDMISFPQEEIGSTSLTRLWIRD 331 (357)
Q Consensus 305 ~~~c~~l~~l~~~~~~~~sL~~L~l~~ 331 (357)
.+ ++-.. .+++|++|+++.
T Consensus 156 ~~-N~~~~-------~~~~l~~L~~~~ 174 (208)
T 2o6s_A 156 HD-NPWDC-------TCPGIRYLSEWI 174 (208)
T ss_dssp CS-CCBCC-------CTTTTHHHHHHH
T ss_pred cC-CCeec-------CCCCHHHHHHHH
Confidence 98 53221 344566665543
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.16 E-value=5.5e-10 Score=94.83 Aligned_cols=171 Identities=19% Similarity=0.229 Sum_probs=125.0
Q ss_pred cEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccc-cccccccccccccEEEeeCCCCCcccccc-cCCCCCc
Q 037573 126 KYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELS-SVAEMFAIITSFENIMVNGCDNLKCLPHE-LHKLSRL 203 (357)
Q Consensus 126 ~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~-~~L~~L~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L 203 (357)
+.++.++. .+..+|..+ .++|++|+++++ .+..++... .. +++|+.|+++++ .+..+|.. +..+++|
T Consensus 10 ~~v~c~~~-~l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~------l~~L~~L~l~~n-~l~~~~~~~~~~l~~L 78 (208)
T 2o6s_A 10 TTVECYSQ-GRTSVPTGI--PAQTTYLDLETN-SLKSLPNGVFDE------LTSLTQLYLGGN-KLQSLPNGVFNKLTSL 78 (208)
T ss_dssp TEEECCSS-CCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTT------CTTCSEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred CEEEecCC-CccCCCCCC--CCCCcEEEcCCC-ccCcCChhhhcc------cccCcEEECCCC-ccCccChhhcCCCCCc
Confidence 45555553 356677544 568999999995 566676643 35 899999999986 56777654 5789999
Q ss_pred cEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhHh-hhccCCcccceeeccCcCccccCCC--CCCCCcceEEe
Q 037573 204 QQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALLN-GIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKI 279 (357)
Q Consensus 204 ~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l 279 (357)
++|+++++ .+..++...+ .+++|++|+++++. ++.++. .+..+++|++|+++++ .++.++.. ..+++|++|++
T Consensus 79 ~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l 155 (208)
T 2o6s_A 79 TYLNLSTN-QLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWL 155 (208)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEEC
T ss_pred CEEECCCC-cCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEe
Confidence 99999985 6677776332 23599999998854 666655 4688999999999984 67777765 33789999999
Q ss_pred cCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCC
Q 037573 280 TDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEI 319 (357)
Q Consensus 280 ~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~ 319 (357)
++ +.+. ..+++|+.|++.. +..-..+|..++
T Consensus 156 ~~-N~~~-------~~~~~l~~L~~~~-n~~~g~ip~~~~ 186 (208)
T 2o6s_A 156 HD-NPWD-------CTCPGIRYLSEWI-NKHSGVVRNSAG 186 (208)
T ss_dssp CS-CCBC-------CCTTTTHHHHHHH-HHCTTTBBCTTS
T ss_pred cC-CCee-------cCCCCHHHHHHHH-HhCCceeeccCc
Confidence 98 4332 4677888888887 555556776554
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.13 E-value=5.6e-10 Score=95.86 Aligned_cols=146 Identities=14% Similarity=0.222 Sum_probs=111.6
Q ss_pred cEEeeccCcCccccccccCCCCCcCEEeecCCCcchhcccc-ccccccccccccccEEEeeCCCCCccc-ccccCCCCCc
Q 037573 126 KYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLEL-SSVAEMFAIITSFENIMVNGCDNLKCL-PHELHKLSRL 203 (357)
Q Consensus 126 ~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~-~~~L~~L~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L 203 (357)
+.++.++. .++.+|..+. ++|+.|++++ ..+..++.. +.. +++|+.|+++++. +..+ |..+..+++|
T Consensus 14 ~~v~c~~~-~l~~iP~~l~--~~l~~L~l~~-n~i~~i~~~~~~~------l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L 82 (220)
T 2v9t_B 14 NIVDCRGK-GLTEIPTNLP--ETITEIRLEQ-NTIKVIPPGAFSP------YKKLRRIDLSNNQ-ISELAPDAFQGLRSL 82 (220)
T ss_dssp TEEECTTS-CCSSCCSSCC--TTCCEEECCS-SCCCEECTTSSTT------CTTCCEEECCSSC-CCEECTTTTTTCSSC
T ss_pred CEEEcCCC-CcCcCCCccC--cCCCEEECCC-CcCCCcCHhHhhC------CCCCCEEECCCCc-CCCcCHHHhhCCcCC
Confidence 55677664 4778887553 6899999998 467777763 335 8899999999964 5555 7788999999
Q ss_pred cEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhh-HhhhccCCcccceeeccCcCccccCCC--CCCCCcceEEe
Q 037573 204 QQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEAL-LNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKI 279 (357)
Q Consensus 204 ~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l 279 (357)
+.|++++ ..+..+|...+ .+++|++|+++++. ++.+ |..+..+++|++|++++ +.++.++.. ..+++|++|++
T Consensus 83 ~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 83 NSLVLYG-NKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp CEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEEC
T ss_pred CEEECCC-CcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEe
Confidence 9999998 47778887433 24599999998865 5555 56788999999999998 567777764 33789999999
Q ss_pred cCCCCce
Q 037573 280 TDVNIFK 286 (357)
Q Consensus 280 ~~c~~l~ 286 (357)
++ |.+.
T Consensus 160 ~~-N~~~ 165 (220)
T 2v9t_B 160 AQ-NPFI 165 (220)
T ss_dssp CS-SCEE
T ss_pred CC-CCcC
Confidence 98 5554
No 113
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.13 E-value=1.2e-10 Score=95.45 Aligned_cols=87 Identities=14% Similarity=0.019 Sum_probs=44.8
Q ss_pred CcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCC---CCCCCCcceEEecCCCCceeccc---ccccccCCc
Q 037573 226 NLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPE---NDYPTNLTILKITDVNIFKSLFQ---WGLHRLNSL 299 (357)
Q Consensus 226 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~l~~c~~l~~~~~---~~l~~l~~L 299 (357)
+|++|++++|.-...+|..+..+++|++|+++++ .++.++. ...+++|+.|++++ +.++.++. ..+..+++|
T Consensus 72 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L 149 (168)
T 2ell_A 72 KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFN-CEVTNLNDYRESVFKLLPQL 149 (168)
T ss_dssp SCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCS-SGGGTSTTHHHHHHTTCSSC
T ss_pred CCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeC-CcCcchHHHHHHHHHhCccC
Confidence 5555555554322224444445566666666553 4444331 12345666666666 44554443 235567777
Q ss_pred cEEEEeccCCCCCcCCC
Q 037573 300 KELIVNGEFPDMISFPQ 316 (357)
Q Consensus 300 ~~L~l~~~c~~l~~l~~ 316 (357)
++|++.+ | .+.++|.
T Consensus 150 ~~L~l~~-n-~~~~~~~ 164 (168)
T 2ell_A 150 TYLDGYD-R-EDQEAPD 164 (168)
T ss_dssp CEETTEE-T-TSCBCCS
T ss_pred cEecCCC-C-Chhhccc
Confidence 7777776 3 4455544
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.13 E-value=2.3e-10 Score=105.84 Aligned_cols=166 Identities=16% Similarity=0.165 Sum_probs=122.1
Q ss_pred CEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccc-cC-CCCCccEEEecCCCCCcccCCCCC-CCCC
Q 037573 150 TEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHE-LH-KLSRLQQIEIRNCPSLVSFPERGL-PSTN 226 (357)
Q Consensus 150 ~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~-l~-~l~~L~~L~l~~c~~l~~l~~~~~-~~~~ 226 (357)
+.++.++ ..+..+|..+ .+.++.|+++++ .+..++.. +. .+++|+.|+++++ .+..++...+ .+++
T Consensus 21 ~~l~c~~-~~l~~iP~~~--------~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~ 89 (361)
T 2xot_A 21 NILSCSK-QQLPNVPQSL--------PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPN 89 (361)
T ss_dssp TEEECCS-SCCSSCCSSC--------CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTT
T ss_pred CEEEeCC-CCcCccCccC--------CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCC
Confidence 5677776 5678888764 457999999995 57777655 44 7999999999984 6777775322 2349
Q ss_pred cceEEeccCCcchhhHh-hhccCCcccceeeccCcCccccCCC--CCCCCcceEEecCCCCceecccccc---cccCCcc
Q 037573 227 LTAVCVINCEKLEALLN-GIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKITDVNIFKSLFQWGL---HRLNSLK 300 (357)
Q Consensus 227 L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~~~~~~~l---~~l~~L~ 300 (357)
|++|+++++. ++.++. .+..+++|++|++++ +.+..++.. ..+++|+.|++++ +.++.++...+ ..+++|+
T Consensus 90 L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 90 LRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYN-NHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLM 166 (361)
T ss_dssp CCEEECCSSC-CCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCC
T ss_pred CCEEECCCCc-CCcCCHHHhCCCcCCCEEECCC-CcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCC
Confidence 9999998855 676654 578999999999999 467777544 3378999999999 78888776644 5689999
Q ss_pred EEEEeccCCCCCcCCCCC-CCCCC--cceEeccc
Q 037573 301 ELIVNGEFPDMISFPQEE-IGSTS--LTRLWIRD 331 (357)
Q Consensus 301 ~L~l~~~c~~l~~l~~~~-~~~~s--L~~L~l~~ 331 (357)
+|++++ +.+..+|... ..++. ++.|++.+
T Consensus 167 ~L~L~~--N~l~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 167 LLDLSS--NKLKKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp EEECCS--SCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred EEECCC--CCCCccCHHHhhhccHhhcceEEecC
Confidence 999998 7888877422 12333 36677765
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.12 E-value=1e-09 Score=94.82 Aligned_cols=144 Identities=21% Similarity=0.228 Sum_probs=103.4
Q ss_pred cCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccc-ccccCCCCCccEEEecCCCCCcccCCCCC-CCCC
Q 037573 149 LTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCL-PHELHKLSRLQQIEIRNCPSLVSFPERGL-PSTN 226 (357)
Q Consensus 149 L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~l~~~~~-~~~~ 226 (357)
-..++.++ ..+..+|..+ .++|+.|+++++. +..+ |..+..+++|+.|+++++ .+..++...+ .+++
T Consensus 21 ~~~v~c~~-~~l~~ip~~~--------~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~ 89 (229)
T 3e6j_A 21 GTTVDCRS-KRHASVPAGI--------PTNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQ 89 (229)
T ss_dssp TTEEECTT-SCCSSCCSCC--------CTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred CCEeEccC-CCcCccCCCC--------CCCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCC
Confidence 45667766 5677777654 5788899998864 4444 566778888999988874 5677765332 2348
Q ss_pred cceEEeccCCcchhhHh-hhccCCcccceeeccCcCccccCCC-CCCCCcceEEecCCCCceecccccccccCCccEEEE
Q 037573 227 LTAVCVINCEKLEALLN-GIHRLTSHQQLTVEQCPGIVAIPEN-DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIV 304 (357)
Q Consensus 227 L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l 304 (357)
|++|+++++ .++.++. .+..+++|++|++++ +.++.+|.. ..+++|+.|++++ +.++.++...+..+++|++|++
T Consensus 90 L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 90 LTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCC-NKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCEEECCCC-cCCccChhHhCcchhhCeEeccC-CcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEe
Confidence 888888875 4666654 357788888888887 467777655 3467888888888 6777776655777888888888
Q ss_pred ec
Q 037573 305 NG 306 (357)
Q Consensus 305 ~~ 306 (357)
.+
T Consensus 167 ~~ 168 (229)
T 3e6j_A 167 FG 168 (229)
T ss_dssp TT
T ss_pred eC
Confidence 87
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.11 E-value=2.6e-13 Score=132.93 Aligned_cols=180 Identities=15% Similarity=0.151 Sum_probs=135.2
Q ss_pred cCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCC-------------CCcccccccCCCCCccEEE-e
Q 037573 143 LHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCD-------------NLKCLPHELHKLSRLQQIE-I 208 (357)
Q Consensus 143 ~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~-------------~l~~lp~~l~~l~~L~~L~-l 208 (357)
+..+++|+.|++++ ..+..+|..+++ +++|+.|+++++. .....|..++.+++|+.|+ +
T Consensus 345 ~~~~~~L~~L~Ls~-n~L~~Lp~~i~~------l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l 417 (567)
T 1dce_A 345 SATDEQLFRCELSV-EKSTVLQSELES------CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 417 (567)
T ss_dssp CSTTTTSSSCCCCH-HHHHHHHHHHHH------HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG
T ss_pred cccCccceeccCCh-hhHHhhHHHHHH------HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcch
Confidence 46788999999998 578899988877 7888888875542 2344566777788888887 3
Q ss_pred cCCCCCcccCC--------CCCCCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC-CCCCCcceEEe
Q 037573 209 RNCPSLVSFPE--------RGLPSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN-DYPTNLTILKI 279 (357)
Q Consensus 209 ~~c~~l~~l~~--------~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l 279 (357)
+. ..+..++. ..++...|+.|+++++ .++.+|. ++.+++|++|+++++ .++.+|.. +.+++|+.|++
T Consensus 418 ~~-n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L 493 (567)
T 1dce_A 418 RA-AYLDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQA 493 (567)
T ss_dssp GH-HHHHHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEEC
T ss_pred hh-cccchhhhhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEEC
Confidence 32 22222211 1112236899999885 5788886 999999999999994 67788765 45889999999
Q ss_pred cCCCCceecccccccccCCccEEEEeccCCCCCcC--CCCCCCCCCcceEecccCccccccc
Q 037573 280 TDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISF--PQEEIGSTSLTRLWIRDFQNLEYIS 339 (357)
Q Consensus 280 ~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l--~~~~~~~~sL~~L~l~~c~~L~~l~ 339 (357)
++ +.++.++ .+..+++|++|++++ +.+..+ |..+..+++|+.|++++.+ ++.++
T Consensus 494 s~-N~l~~lp--~l~~l~~L~~L~Ls~--N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~ 549 (567)
T 1dce_A 494 SD-NALENVD--GVANLPRLQELLLCN--NRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEE 549 (567)
T ss_dssp CS-SCCCCCG--GGTTCSSCCEEECCS--SCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSS
T ss_pred CC-CCCCCCc--ccCCCCCCcEEECCC--CCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCc
Confidence 99 7888876 589999999999998 688887 7777788999999998763 44443
No 117
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.11 E-value=2.8e-11 Score=112.03 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=7.1
Q ss_pred cCCCC-CcCEEeecCC
Q 037573 143 LHCLS-SLTEITVAGC 157 (357)
Q Consensus 143 ~~~l~-~L~~L~i~~c 157 (357)
+..++ +|++|++++|
T Consensus 46 l~~~~~~L~~L~Ls~N 61 (362)
T 3goz_A 46 FANTPASVTSLNLSGN 61 (362)
T ss_dssp HHTCCTTCCEEECCSS
T ss_pred HHhCCCceeEEECcCC
Confidence 34444 4555555543
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.09 E-value=6.1e-10 Score=95.60 Aligned_cols=143 Identities=17% Similarity=0.234 Sum_probs=107.5
Q ss_pred CEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccccc--ccCCCCCccEEEecCCCCCcccCCCCC-CCCC
Q 037573 150 TEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPH--ELHKLSRLQQIEIRNCPSLVSFPERGL-PSTN 226 (357)
Q Consensus 150 ~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~--~l~~l~~L~~L~l~~c~~l~~l~~~~~-~~~~ 226 (357)
+.+++++ ..+..+|..+ .+.++.|+++++ .+..++. .+..+++|+.|+++++ .+..++...+ .+++
T Consensus 14 ~~l~~s~-n~l~~iP~~~--------~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~ 82 (220)
T 2v70_A 14 TTVDCSN-QKLNKIPEHI--------PQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASG 82 (220)
T ss_dssp TEEECCS-SCCSSCCSCC--------CTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTT
T ss_pred CEeEeCC-CCcccCccCC--------CCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCC
Confidence 5788887 5677888754 457889999985 4666632 3678999999999984 5776765222 2348
Q ss_pred cceEEeccCCcchhhH-hhhccCCcccceeeccCcCccccCCC--CCCCCcceEEecCCCCceecccccccccCCccEEE
Q 037573 227 LTAVCVINCEKLEALL-NGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELI 303 (357)
Q Consensus 227 L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~ 303 (357)
|++|+++++. ++.++ ..+..+++|++|++++ +.+..++.. ..+++|+.|++++ +.++.+++..+..+++|++|+
T Consensus 83 L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 83 VNEILLTSNR-LENVQHKMFKGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp CCEEECCSSC-CCCCCGGGGTTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEE
T ss_pred CCEEECCCCc-cCccCHhHhcCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEE
Confidence 9999998855 55554 4588899999999988 467766443 3368999999998 778877666688899999999
Q ss_pred Eec
Q 037573 304 VNG 306 (357)
Q Consensus 304 l~~ 306 (357)
+++
T Consensus 160 L~~ 162 (220)
T 2v70_A 160 LLA 162 (220)
T ss_dssp CCS
T ss_pred ecC
Confidence 998
No 119
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.09 E-value=7.4e-12 Score=115.95 Aligned_cols=11 Identities=9% Similarity=-0.193 Sum_probs=6.2
Q ss_pred cceEEeeccCC
Q 037573 51 KAWKLIIRTCC 61 (357)
Q Consensus 51 ~l~~l~l~~c~ 61 (357)
+++.|++++|.
T Consensus 23 ~L~~L~Ls~n~ 33 (362)
T 3goz_A 23 GVTSLDLSLNN 33 (362)
T ss_dssp TCCEEECTTSC
T ss_pred CceEEEccCCC
Confidence 36666666553
No 120
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.06 E-value=2.1e-11 Score=116.34 Aligned_cols=198 Identities=17% Similarity=0.214 Sum_probs=93.4
Q ss_pred ccCCCcccEEeeccCcCcccccc-ccCCCC----CcCEEeecCCCcch-----hccccccccccccccccccEEEeeCCC
Q 037573 119 IQVLCRLKYLELIDCECLVNLPQ-ALHCLS----SLTEITVAGCTKLV-----SFLELSSVAEMFAIITSFENIMVNGCD 188 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~----~L~~L~i~~c~~l~-----~~~~~~~~L~~L~~l~~L~~L~l~~c~ 188 (357)
+..+++|++|+++++..-...+. -...++ +|++|++++|. +. .++..+.. +++|++|++++|.
T Consensus 52 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~------~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 52 LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRT------LPTLQELHLSDNL 124 (461)
T ss_dssp HHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTS------CTTCCEEECCSSB
T ss_pred HHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHcc------CCceeEEECCCCc
Confidence 44456666666666542111111 111233 46666666653 22 23333333 5666666666654
Q ss_pred CCcc-----cccccC-CCCCccEEEecCCCCCcccC-----C--CCCCCCCcceEEeccCCcchhh-Hhh----hc-cCC
Q 037573 189 NLKC-----LPHELH-KLSRLQQIEIRNCPSLVSFP-----E--RGLPSTNLTAVCVINCEKLEAL-LNG----IH-RLT 249 (357)
Q Consensus 189 ~l~~-----lp~~l~-~l~~L~~L~l~~c~~l~~l~-----~--~~~~~~~L~~L~l~~c~~l~~l-~~~----~~-~l~ 249 (357)
+.. +...+. ..++|++|++++| .+.... . ..++ +|++|+++++. ++.. +.. +. ..+
T Consensus 125 -i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~--~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~ 199 (461)
T 1z7x_W 125 -LGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKP--DFKELTVSNND-INEAGVRVLCQGLKDSPC 199 (461)
T ss_dssp -CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCT--TCCEEECCSSB-CHHHHHHHHHHHHHHSCC
T ss_pred -CchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCC--CCCEEECcCCC-cchHHHHHHHHHHhcCCC
Confidence 321 111111 2345666666665 232211 1 1123 66667766654 3321 111 11 244
Q ss_pred cccceeeccCcCccc-----cCCC-CCCCCcceEEecCCCCceecc-----cccccccCCccEEEEeccCCCCCc-----
Q 037573 250 SHQQLTVEQCPGIVA-----IPEN-DYPTNLTILKITDVNIFKSLF-----QWGLHRLNSLKELIVNGEFPDMIS----- 313 (357)
Q Consensus 250 ~L~~L~l~~c~~l~~-----l~~~-~~~~~L~~L~l~~c~~l~~~~-----~~~l~~l~~L~~L~l~~~c~~l~~----- 313 (357)
+|++|++++| .+.. ++.. ..+++|++|+++++ .++... +.....+++|++|++++ | .+..
T Consensus 200 ~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~-n-~l~~~~~~~ 275 (461)
T 1z7x_W 200 QLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWE-C-GITAKGCGD 275 (461)
T ss_dssp CCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTT-S-CCCHHHHHH
T ss_pred CceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcC-C-CCCHHHHHH
Confidence 6677777665 2332 1111 12466777777763 444221 11112466777777776 4 5544
Q ss_pred CCCCCCCCCCcceEecccC
Q 037573 314 FPQEEIGSTSLTRLWIRDF 332 (357)
Q Consensus 314 l~~~~~~~~sL~~L~l~~c 332 (357)
++..+...++|++|+++++
T Consensus 276 l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 276 LCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp HHHHHHHCTTCCEEECTTC
T ss_pred HHHHHhhCCCcceEECCCC
Confidence 4433333567777777765
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.06 E-value=2.6e-10 Score=91.45 Aligned_cols=126 Identities=15% Similarity=0.130 Sum_probs=88.8
Q ss_pred CCCcccEEeeccCcCc-cccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcc-cccccC
Q 037573 121 VLCRLKYLELIDCECL-VNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKC-LPHELH 198 (357)
Q Consensus 121 ~l~~L~~L~l~~~~~l-~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~-lp~~l~ 198 (357)
..++|+.|+++++..- +.+|..+..+++|++|+++++ .+..+ ..+.. +++|+.|++++|. +.. +|..+.
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~------l~~L~~L~Ls~n~-i~~~~~~~~~ 85 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPK------LNKLKKLELSDNR-VSGGLEVLAE 85 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCC------CTTCCEEECCSSC-CCSCTHHHHH
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhc------CCCCCEEECCCCc-ccchHHHHhh
Confidence 3478999999998643 378887888999999999986 56555 33334 8899999998865 444 777676
Q ss_pred CCCCccEEEecCCCCCcccC--CCCCCCCCcceEEeccCCcchhhHh----hhccCCcccceeec
Q 037573 199 KLSRLQQIEIRNCPSLVSFP--ERGLPSTNLTAVCVINCEKLEALLN----GIHRLTSHQQLTVE 257 (357)
Q Consensus 199 ~l~~L~~L~l~~c~~l~~l~--~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~l~~L~~L~l~ 257 (357)
.+++|+.|+++++ .++.++ .....+++|++|++++|. ++.++. .+..+++|++|+++
T Consensus 86 ~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 86 KCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 7888888888875 455543 211122378888887753 555543 56777888887765
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.04 E-value=3.8e-10 Score=90.51 Aligned_cols=123 Identities=15% Similarity=0.107 Sum_probs=73.5
Q ss_pred cccccEEEeeCCCCCc--ccccccCCCCCccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchh-hHhhhccCCcc
Q 037573 176 ITSFENIMVNGCDNLK--CLPHELHKLSRLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEA-LLNGIHRLTSH 251 (357)
Q Consensus 176 l~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~-l~~~~~~l~~L 251 (357)
.++|+.|++++|. +. .+|..+..+++|+.|+++++ .+..++. ..+ ++|++|+++++. ++. +|..+..+++|
T Consensus 16 ~~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l--~~L~~L~Ls~n~-i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 16 PSDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINV-GLTSIANLPKL--NKLKKLELSDNR-VSGGLEVLAEKCPNL 90 (149)
T ss_dssp GGGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTS-CCCCCTTCCCC--TTCCEEECCSSC-CCSCTHHHHHHCTTC
T ss_pred CccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCC-CCCCchhhhcC--CCCCEEECCCCc-ccchHHHHhhhCCCC
Confidence 4567777777764 44 66666677777777777765 4444421 223 377777777754 443 66666667777
Q ss_pred cceeeccCcCccccC--C-CCCCCCcceEEecCCCCceeccc---ccccccCCccEEEEe
Q 037573 252 QQLTVEQCPGIVAIP--E-NDYPTNLTILKITDVNIFKSLFQ---WGLHRLNSLKELIVN 305 (357)
Q Consensus 252 ~~L~l~~c~~l~~l~--~-~~~~~~L~~L~l~~c~~l~~~~~---~~l~~l~~L~~L~l~ 305 (357)
++|+++++ .++.++ . .+.+++|++|++++ +.++..+. ..+..+++|++|+++
T Consensus 91 ~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 91 THLNLSGN-KIKDLSTIEPLKKLENLKSLDLFN-CEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTS-CCCSHHHHGGGGGCTTCCEEECTT-CGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CEEECCCC-cCCChHHHHHHhhCCCCCEEeCcC-CcccchHHHHHHHHHHCCCcccccCC
Confidence 77777774 454432 1 13356666677766 44554443 235566666666543
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.03 E-value=1.9e-10 Score=115.94 Aligned_cols=152 Identities=13% Similarity=0.075 Sum_probs=106.8
Q ss_pred cccccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccccc
Q 037573 116 TSVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPH 195 (357)
Q Consensus 116 ~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~ 195 (357)
+..+..+++|+.|+++++. +..+|..+..+++|++|+++++ .+..+|..+.+ +++|+.|+++++. +..+|.
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~------l~~L~~L~Ls~N~-l~~lp~ 287 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGN-SLTELPAEIKN------LSNLRVLDLSHNR-LTSLPA 287 (727)
T ss_dssp -----CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGG------GTTCCEEECTTSC-CSSCCS
T ss_pred hhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCC-cCcccChhhhC------CCCCCEEeCcCCc-CCccCh
Confidence 4457788999999999986 5688888889999999999985 67788887767 9999999999964 779999
Q ss_pred ccCCCCCccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhHhhhccCCc-ccceeeccCcCccccCCCCCCCCc
Q 037573 196 ELHKLSRLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALLNGIHRLTS-HQQLTVEQCPGIVAIPENDYPTNL 274 (357)
Q Consensus 196 ~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~-L~~L~l~~c~~l~~l~~~~~~~~L 274 (357)
.++.+++|+.|+++++ .+..+|.....+++|++|+++++.-...+|..+..+.. +..+++.++ .+. ...+..|
T Consensus 288 ~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N-~l~----~~~p~~l 361 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDN-RPE----IPLPHER 361 (727)
T ss_dssp SGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHC-CCC----CCCCCC-
T ss_pred hhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccC-ccc----CcCcccc
Confidence 9999999999999985 67888875444559999999997654566665544322 233566663 332 2345678
Q ss_pred ceEEecCC
Q 037573 275 TILKITDV 282 (357)
Q Consensus 275 ~~L~l~~c 282 (357)
+.|+++..
T Consensus 362 ~~l~l~~n 369 (727)
T 4b8c_D 362 RFIEINTD 369 (727)
T ss_dssp --------
T ss_pred ceeEeecc
Confidence 88888763
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.02 E-value=2.4e-09 Score=89.88 Aligned_cols=100 Identities=16% Similarity=0.217 Sum_probs=49.4
Q ss_pred CcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--CCCCCcceEEecCCCCceecccccccccCCccEEE
Q 037573 226 NLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELI 303 (357)
Q Consensus 226 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~ 303 (357)
+|++|+++++ .++.+|..+..+++|++|++++ +.++.++.. ..+++|++|++++ +.++.+++..+..+++|++|+
T Consensus 32 ~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 32 DVTELYLDGN-QFTLVPKELSNYKHLTLIDLSN-NRISTLSNQSFSNMTQLLTLILSY-NRLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp TCCEEECCSS-CCCSCCGGGGGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCEEECCCC-cCchhHHHhhcccCCCEEECCC-CcCCEeCHhHccCCCCCCEEECCC-CccCEeCHHHhCCCCCCCEEE
Confidence 5555555442 2444544555555555555555 244444432 1245555555555 445544444445555555555
Q ss_pred EeccCCCCCcCCCC-CCCCCCcceEecc
Q 037573 304 VNGEFPDMISFPQE-EIGSTSLTRLWIR 330 (357)
Q Consensus 304 l~~~c~~l~~l~~~-~~~~~sL~~L~l~ 330 (357)
+++ +.+..+|.. +..+++|++|++.
T Consensus 109 L~~--N~l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 109 LHG--NDISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp CCS--SCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCC--CCCCeeChhhhhcCccccEEEeC
Confidence 555 455555443 2234555555554
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.98 E-value=3.1e-09 Score=96.83 Aligned_cols=76 Identities=16% Similarity=0.260 Sum_probs=38.4
Q ss_pred CCcccceeeccCcCccccCCCCC--CCCcceEEecCCCCceecccccccccCCcc-EEEEeccCCCCCcCCCCC-CCCCC
Q 037573 248 LTSHQQLTVEQCPGIVAIPENDY--PTNLTILKITDVNIFKSLFQWGLHRLNSLK-ELIVNGEFPDMISFPQEE-IGSTS 323 (357)
Q Consensus 248 l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~-~L~l~~~c~~l~~l~~~~-~~~~s 323 (357)
+++|+.+++.+ +.++.++...+ +.+|+++++.+ + ++.++..++..+++|+ ++++.+ .++.++... ..+++
T Consensus 225 ~~~L~~l~L~~-n~i~~I~~~aF~~~~~L~~l~l~~-n-i~~I~~~aF~~~~~L~~~l~l~~---~l~~I~~~aF~~c~~ 298 (329)
T 3sb4_A 225 MPNLVSLDISK-TNATTIPDFTFAQKKYLLKIKLPH-N-LKTIGQRVFSNCGRLAGTLELPA---SVTAIEFGAFMGCDN 298 (329)
T ss_dssp CTTCCEEECTT-BCCCEECTTTTTTCTTCCEEECCT-T-CCEECTTTTTTCTTCCEEEEECT---TCCEECTTTTTTCTT
T ss_pred cCCCeEEECCC-CCcceecHhhhhCCCCCCEEECCc-c-cceehHHHhhCChhccEEEEEcc---cceEEchhhhhCCcc
Confidence 45556666655 23555554422 45566666654 2 5555555555555565 555553 444444322 23445
Q ss_pred cceEec
Q 037573 324 LTRLWI 329 (357)
Q Consensus 324 L~~L~l 329 (357)
|+++++
T Consensus 299 L~~l~l 304 (329)
T 3sb4_A 299 LRYVLA 304 (329)
T ss_dssp EEEEEE
T ss_pred CCEEEe
Confidence 555544
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.94 E-value=1.6e-09 Score=89.42 Aligned_cols=128 Identities=15% Similarity=0.220 Sum_probs=79.1
Q ss_pred ccCCCcccEEeeccCcCccccccccCCCC-CcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccccccc
Q 037573 119 IQVLCRLKYLELIDCECLVNLPQALHCLS-SLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHEL 197 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~-~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l 197 (357)
+..+.+|+.|+++++. +..+|. +..+. +|++|+++++ .+..+ ..+.. +++|+.|+++++ .+..+|..+
T Consensus 15 ~~~~~~L~~L~l~~n~-l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~-~~l~~------l~~L~~L~Ls~N-~l~~~~~~~ 83 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYK-IPVIEN-LGATLDQFDAIDFSDN-EIRKL-DGFPL------LRRLKTLLVNNN-RICRIGEGL 83 (176)
T ss_dssp EECTTSCEEEECTTSC-CCSCCC-GGGGTTCCSEEECCSS-CCCEE-CCCCC------CSSCCEEECCSS-CCCEECSCH
T ss_pred cCCcCCceEEEeeCCC-CchhHH-hhhcCCCCCEEECCCC-CCCcc-ccccc------CCCCCEEECCCC-cccccCcch
Confidence 4556788888888874 556654 44443 7888888874 45554 22223 777888888775 466666554
Q ss_pred -CCCCCccEEEecCCCCCcccCC--CCCCCCCcceEEeccCCcchhhHhh----hccCCcccceeeccC
Q 037573 198 -HKLSRLQQIEIRNCPSLVSFPE--RGLPSTNLTAVCVINCEKLEALLNG----IHRLTSHQQLTVEQC 259 (357)
Q Consensus 198 -~~l~~L~~L~l~~c~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~l~~~----~~~l~~L~~L~l~~c 259 (357)
..+++|+.|+++++ .+..+|. ....+++|++|+++++. +..+|.. +..+++|++|+++++
T Consensus 84 ~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 84 DQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp HHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred hhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence 66777777777764 4455543 11122367777776644 4555543 566677777776664
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.90 E-value=1.3e-08 Score=84.04 Aligned_cols=121 Identities=23% Similarity=0.306 Sum_probs=70.8
Q ss_pred ccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhHh-hhccCCcccceee
Q 037573 179 FENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALLN-GIHRLTSHQQLTV 256 (357)
Q Consensus 179 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l 256 (357)
.+.+++++. .+..+|..+ .++|+.|+++++ .+..++...+ .+++|++|+++++ .++.++. .+..+++|++|++
T Consensus 9 ~~~l~~~~~-~l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSK-GLTSVPTGI--PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSS-CCSSCCTTC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCC-CCccCCCCC--CCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEEC
Confidence 455666553 456666444 356777777763 4555554322 2236777777664 3555543 3466677777777
Q ss_pred ccCcCccccCCC--CCCCCcceEEecCCCCceecccccccccCCccEEEEec
Q 037573 257 EQCPGIVAIPEN--DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNG 306 (357)
Q Consensus 257 ~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~ 306 (357)
++ +.++.++.. ..+++|++|++++ +.++.++...+..+++|++|++.+
T Consensus 84 ~~-N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 84 HE-NKLQSLPNGVFDKLTQLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp CS-SCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CC-CCccccCHHHhhCCcccCEEECcC-CcceEeCHHHhcCCcccCEEEecC
Confidence 66 355555543 2256677777766 556655554445666777777766
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.88 E-value=1.3e-08 Score=85.33 Aligned_cols=121 Identities=17% Similarity=0.188 Sum_probs=90.3
Q ss_pred ccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCcccCCC--CCCCCCcceEEeccCCcchhh-HhhhccCCccccee
Q 037573 179 FENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPER--GLPSTNLTAVCVINCEKLEAL-LNGIHRLTSHQQLT 255 (357)
Q Consensus 179 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~ 255 (357)
.+.++++++ .+..+|..+. .+|+.|+++++ .+..++.. .-.+++|++|+++++. ++.+ |..+..+++|++|+
T Consensus 10 ~~~l~~s~~-~l~~ip~~~~--~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 10 GTTVDCTGR-GLKEIPRDIP--LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TTEEECTTS-CCSSCCSCCC--TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEE
T ss_pred CCEEEcCCC-CcCcCccCCC--CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEE
Confidence 467888774 5788887664 38899999874 66666652 1233489999998855 5555 66788899999999
Q ss_pred eccCcCccccCCC--CCCCCcceEEecCCCCceecccccccccCCccEEEEec
Q 037573 256 VEQCPGIVAIPEN--DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNG 306 (357)
Q Consensus 256 l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~ 306 (357)
+++ +.++.++.. ..+++|++|++++ +.++.+.+..+..+++|++|++++
T Consensus 85 Ls~-N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 85 LGE-NKIKEISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CCS-CCCCEECSSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTT
T ss_pred CCC-CcCCccCHHHhcCCCCCCEEECCC-CcCCeeCHHHhhcCCCCCEEEeCC
Confidence 988 467777654 2368899999998 677777666678888999999988
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.86 E-value=1.1e-08 Score=85.60 Aligned_cols=123 Identities=15% Similarity=0.201 Sum_probs=92.2
Q ss_pred CEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccc--cCCCCCccEEEecCCCCCcccCC-CCCCCCC
Q 037573 150 TEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHE--LHKLSRLQQIEIRNCPSLVSFPE-RGLPSTN 226 (357)
Q Consensus 150 ~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~--l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~ 226 (357)
+.+++++ ..+..+|..+ ..+|+.|+++++ .+..++.. +..+++|+.|+++++ .+..++. ....+++
T Consensus 11 ~~l~~s~-~~l~~ip~~~--------~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~ 79 (192)
T 1w8a_A 11 TTVDCTG-RGLKEIPRDI--------PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASH 79 (192)
T ss_dssp TEEECTT-SCCSSCCSCC--------CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTT
T ss_pred CEEEcCC-CCcCcCccCC--------CCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCccc
Confidence 6788887 5678888765 458999999986 57777653 788999999999985 5666643 2223349
Q ss_pred cceEEeccCCcchhhHh-hhccCCcccceeeccCcCccccCCC--CCCCCcceEEecCCCCce
Q 037573 227 LTAVCVINCEKLEALLN-GIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKITDVNIFK 286 (357)
Q Consensus 227 L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~ 286 (357)
|++|+++++. ++.++. .+..+++|++|+++++ .+..++.. ..+++|++|++++ +.+.
T Consensus 80 L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~-N~l~ 139 (192)
T 1w8a_A 80 IQELQLGENK-IKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLAS-NPFN 139 (192)
T ss_dssp CCEEECCSCC-CCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTT-CCBC
T ss_pred CCEEECCCCc-CCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCC-CCcc
Confidence 9999998855 666544 5788999999999984 67666443 3478999999998 6665
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.84 E-value=1.4e-08 Score=85.18 Aligned_cols=123 Identities=18% Similarity=0.261 Sum_probs=87.8
Q ss_pred CEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccccCCCCCccEEEecCCCCCcccCCCCC-CCCCcc
Q 037573 150 TEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGL-PSTNLT 228 (357)
Q Consensus 150 ~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~ 228 (357)
+.++.++ ..+..+|..+ .++|+.|+++++ .+..+|..+..+++|+.|+++++ .++.++...+ .+++|+
T Consensus 13 ~~l~~~~-~~l~~ip~~~--------~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~ 81 (193)
T 2wfh_A 13 TVVRCSN-KGLKVLPKGI--------PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLL 81 (193)
T ss_dssp TEEECTT-SCCSSCCSCC--------CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred CEEEcCC-CCCCcCCCCC--------CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCC
Confidence 5677776 4677888654 568999999885 57788888888999999999874 6666665322 234888
Q ss_pred eEEeccCCcchhhH-hhhccCCcccceeeccCcCccccCCCC--CCCCcceEEecCCCCce
Q 037573 229 AVCVINCEKLEALL-NGIHRLTSHQQLTVEQCPGIVAIPEND--YPTNLTILKITDVNIFK 286 (357)
Q Consensus 229 ~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~c~~l~ 286 (357)
+|+++++. ++.++ ..+..+++|++|++++ +.+..++... .+++|+.|++++ |.+.
T Consensus 82 ~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~-N~~~ 139 (193)
T 2wfh_A 82 TLILSYNR-LRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGA-NPLY 139 (193)
T ss_dssp EEECCSSC-CCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCS-SCEE
T ss_pred EEECCCCc-cCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCC-CCee
Confidence 88887754 55554 3577788888888887 4677776642 367788888877 4443
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.81 E-value=4.8e-09 Score=86.60 Aligned_cols=77 Identities=13% Similarity=0.222 Sum_probs=35.6
Q ss_pred cccccEEEeeCCCCCcccccccCCC-CCccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchhhHhhh-ccCCccc
Q 037573 176 ITSFENIMVNGCDNLKCLPHELHKL-SRLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEALLNGI-HRLTSHQ 252 (357)
Q Consensus 176 l~~L~~L~l~~c~~l~~lp~~l~~l-~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~ 252 (357)
+++|+.|++++| .+..+|. +..+ ++|+.|+++++ .+..++. ..+ ++|++|+++++. ++.+|..+ ..+++|+
T Consensus 18 ~~~L~~L~l~~n-~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~~~l~~l--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 18 AVRDRELDLRGY-KIPVIEN-LGATLDQFDAIDFSDN-EIRKLDGFPLL--RRLKTLLVNNNR-ICRIGEGLDQALPDLT 91 (176)
T ss_dssp TTSCEEEECTTS-CCCSCCC-GGGGTTCCSEEECCSS-CCCEECCCCCC--SSCCEEECCSSC-CCEECSCHHHHCTTCC
T ss_pred cCCceEEEeeCC-CCchhHH-hhhcCCCCCEEECCCC-CCCcccccccC--CCCCEEECCCCc-ccccCcchhhcCCCCC
Confidence 556666666664 3444443 3332 35666666553 3333321 122 255555554432 34443322 4445555
Q ss_pred ceeecc
Q 037573 253 QLTVEQ 258 (357)
Q Consensus 253 ~L~l~~ 258 (357)
+|++++
T Consensus 92 ~L~L~~ 97 (176)
T 1a9n_A 92 ELILTN 97 (176)
T ss_dssp EEECCS
T ss_pred EEECCC
Confidence 555544
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.79 E-value=7.4e-09 Score=104.37 Aligned_cols=153 Identities=12% Similarity=0.090 Sum_probs=85.1
Q ss_pred CCcCEEeecCCCcchhccccccccccccccccccEEEeeC----CCCCcccccccCCCCCccEEEecCCCCCcccCCCCC
Q 037573 147 SSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNG----CDNLKCLPHELHKLSRLQQIEIRNCPSLVSFPERGL 222 (357)
Q Consensus 147 ~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~----c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~ 222 (357)
+.++.|++.+ ..+...+..... ...|..+.|.. ++.+...|..+..+++|+.|+++++ .+..+|...+
T Consensus 173 ~~~~~l~L~~-n~~~~~~~~~l~------~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~ 244 (727)
T 4b8c_D 173 PLTPKIELFA-NGKDEANQALLQ------HKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNL-QIFNISANIF 244 (727)
T ss_dssp --------------------------------------------------------CCCCCCEEECTTS-CCSCCCGGGG
T ss_pred CccceEEeeC-CCCCcchhhHhh------cCccCcccccCccccccceecChhhhccCCCCcEEECCCC-CCCCCChhhc
Confidence 5577777765 345444443322 22333333322 1234445667778899999999985 5667776554
Q ss_pred CCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC-CCCCCcceEEecCCCCceecccccccccCCccE
Q 037573 223 PSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN-DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKE 301 (357)
Q Consensus 223 ~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~ 301 (357)
.+++|++|+++++ .++.+|..+..+++|++|+++++ .++.+|.. +.+++|+.|++++ +.++.++.. +..+++|++
T Consensus 245 ~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~-N~l~~lp~~-~~~l~~L~~ 320 (727)
T 4b8c_D 245 KYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYFYFFD-NMVTTLPWE-FGNLCNLQF 320 (727)
T ss_dssp GCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSEEECCS-SCCCCCCSS-TTSCTTCCC
T ss_pred CCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCCCCCEEECCC-CCCCccChh-hhcCCCccE
Confidence 5568999999885 46788888899999999999884 57777765 4478899999998 677777665 888999999
Q ss_pred EEEeccCCCCCc
Q 037573 302 LIVNGEFPDMIS 313 (357)
Q Consensus 302 L~l~~~c~~l~~ 313 (357)
|+|++ +.+..
T Consensus 321 L~L~~--N~l~~ 330 (727)
T 4b8c_D 321 LGVEG--NPLEK 330 (727)
T ss_dssp EECTT--SCCCS
T ss_pred EeCCC--CccCC
Confidence 99998 45543
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.74 E-value=6.7e-08 Score=79.60 Aligned_cols=124 Identities=23% Similarity=0.319 Sum_probs=77.6
Q ss_pred cCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCcccccc-cCCCCCccEEEecCCCCCcccCCCCC-CCCC
Q 037573 149 LTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHE-LHKLSRLQQIEIRNCPSLVSFPERGL-PSTN 226 (357)
Q Consensus 149 L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~~l~~l~~~~~-~~~~ 226 (357)
.+.++.++ ..+..+|... .++|+.|+++++. +..+|.. +..+++|+.|+++++ .+..++...+ .+++
T Consensus 9 ~~~l~~~~-~~l~~~p~~~--------~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~ 77 (177)
T 2o6r_A 9 GTEIRCNS-KGLTSVPTGI--------PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTK 77 (177)
T ss_dssp TTEEECCS-SCCSSCCTTC--------CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTT
T ss_pred CCEEEecC-CCCccCCCCC--------CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCc
Confidence 45666665 4566666443 4677888887753 5555543 466777888888764 5666665321 2347
Q ss_pred cceEEeccCCcchhhHh-hhccCCcccceeeccCcCccccCCCC--CCCCcceEEecCCCCce
Q 037573 227 LTAVCVINCEKLEALLN-GIHRLTSHQQLTVEQCPGIVAIPEND--YPTNLTILKITDVNIFK 286 (357)
Q Consensus 227 L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~c~~l~ 286 (357)
|++|+++++. ++.+|. .+..+++|++|+++++ .++.++... .+++|++|++++ +.+.
T Consensus 78 L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~-N~~~ 137 (177)
T 2o6r_A 78 LTILYLHENK-LQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHT-NPWD 137 (177)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS-SCBC
T ss_pred cCEEECCCCC-ccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecC-CCee
Confidence 7888887743 555544 3567777888888774 566666542 256778888877 4444
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.65 E-value=1.3e-07 Score=86.08 Aligned_cols=179 Identities=11% Similarity=0.116 Sum_probs=111.2
Q ss_pred CCcccEEeeccCcCcccccc-ccCCCCCcCEEeecCCCcchhcccccc-ccccccccccccEEEeeC-------------
Q 037573 122 LCRLKYLELIDCECLVNLPQ-ALHCLSSLTEITVAGCTKLVSFLELSS-VAEMFAIITSFENIMVNG------------- 186 (357)
Q Consensus 122 l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~~-~L~~L~~l~~L~~L~l~~------------- 186 (357)
+++|+.+.+.+ .+..++. .+..+++|+.+++.+ ..+..++...+ . +.++..+....
T Consensus 100 ~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~-n~i~~i~~~aF~~------~~~l~~l~~~~~~~~~~~~~i~~~ 170 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRK-KTAPNLLPEALAD------SVTAIFIPLGSSDAYRFKNRWEHF 170 (329)
T ss_dssp CTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCC-SSCCEECTTSSCT------TTCEEEECTTCTHHHHTSTTTTTS
T ss_pred cCCCcEEECCc--cccchhHHHhhcCcccceEEcCC-CCccccchhhhcC------CCceEEecCcchhhhhcccccccc
Confidence 78888888877 4677665 577888899988886 44555665544 2 22222222211
Q ss_pred ----CCCCc---------cccccc----CCCCCccEEEecCCCCCcccCC--CCCCCCCcceEEeccCCcchhhHh-hhc
Q 037573 187 ----CDNLK---------CLPHEL----HKLSRLQQIEIRNCPSLVSFPE--RGLPSTNLTAVCVINCEKLEALLN-GIH 246 (357)
Q Consensus 187 ----c~~l~---------~lp~~l----~~l~~L~~L~l~~c~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~l~~-~~~ 246 (357)
|..++ .++..+ ....++..+.+.+.-.-..+.. ..+ ++|+.+++.++. ++.+|. .+.
T Consensus 171 ~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~--~~L~~l~L~~n~-i~~I~~~aF~ 247 (329)
T 3sb4_A 171 AFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYM--PNLVSLDISKTN-ATTIPDFTFA 247 (329)
T ss_dssp CEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHC--TTCCEEECTTBC-CCEECTTTTT
T ss_pred ccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhc--CCCeEEECCCCC-cceecHhhhh
Confidence 11111 011100 0122333333332100000000 013 489999998743 677765 578
Q ss_pred cCCcccceeeccCcCccccCCCCC--CCCcc-eEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCC
Q 037573 247 RLTSHQQLTVEQCPGIVAIPENDY--PTNLT-ILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEE 318 (357)
Q Consensus 247 ~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~-~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~ 318 (357)
++++|+.+++.+ +++.++...+ +.+|+ .+++.+ .++.+...++..+++|+++++.+ +.+..++...
T Consensus 248 ~~~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~--n~i~~I~~~a 316 (329)
T 3sb4_A 248 QKKYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG--DKITTLGDEL 316 (329)
T ss_dssp TCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS--SCCCEECTTT
T ss_pred CCCCCCEEECCc--ccceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC--CccCccchhh
Confidence 899999999987 3888877644 78899 999987 68888888889999999999987 7888888755
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.64 E-value=1.6e-10 Score=97.44 Aligned_cols=18 Identities=11% Similarity=0.283 Sum_probs=8.5
Q ss_pred cccccCCCCCcCEEeecC
Q 037573 139 LPQALHCLSSLTEITVAG 156 (357)
Q Consensus 139 lp~~~~~l~~L~~L~i~~ 156 (357)
+|..+..+++|++|++++
T Consensus 40 l~~~~~~l~~L~~L~ls~ 57 (198)
T 1ds9_A 40 MDATLSTLKACKHLALST 57 (198)
T ss_dssp CHHHHHHTTTCSEEECSE
T ss_pred hhHHHhcCCCCCEEECCC
Confidence 333444455555555544
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.63 E-value=1.1e-09 Score=92.32 Aligned_cols=124 Identities=16% Similarity=0.252 Sum_probs=94.3
Q ss_pred cccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccccccc
Q 037573 118 VIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPHEL 197 (357)
Q Consensus 118 ~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~~l 197 (357)
.++.+++|++|+++++. +..+| .+..+++|++|+++++ .+..+|..... +++|+.|++++| .+..+| .+
T Consensus 43 ~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~------~~~L~~L~L~~N-~l~~l~-~~ 111 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRN-LIKKIENLDAV------ADTLEELWISYN-QIASLS-GI 111 (198)
T ss_dssp HHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHH------HHHCSEEEEEEE-ECCCHH-HH
T ss_pred HHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCC-Ccccccchhhc------CCcCCEEECcCC-cCCcCC-cc
Confidence 46778999999999975 66788 6889999999999985 57777765544 789999999996 577777 58
Q ss_pred CCCCCccEEEecCCCCCcccCC----CCCCCCCcceEEeccCCcchhhHh----------hhccCCccccee
Q 037573 198 HKLSRLQQIEIRNCPSLVSFPE----RGLPSTNLTAVCVINCEKLEALLN----------GIHRLTSHQQLT 255 (357)
Q Consensus 198 ~~l~~L~~L~l~~c~~l~~l~~----~~~~~~~L~~L~l~~c~~l~~l~~----------~~~~l~~L~~L~ 255 (357)
..+++|+.|+++++ .+..++. ..++ +|++|+++++.-....|. .+..+++|++|+
T Consensus 112 ~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~--~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 112 EKLVNLRVLYMSNN-KITNWGEIDKLAALD--KLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHSSEEEESEE-ECCCHHHHHHHTTTT--TCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccCCCCCEEECCCC-cCCchhHHHHHhcCC--CCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 88899999999985 5554432 3445 899999988653222222 267788888886
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.58 E-value=1.9e-07 Score=76.52 Aligned_cols=97 Identities=22% Similarity=0.291 Sum_probs=48.2
Q ss_pred cEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhh-HhhhccCCcccceeeccCcCccccCCCC--CCCCcceEEec
Q 037573 204 QQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEAL-LNGIHRLTSHQQLTVEQCPGIVAIPEND--YPTNLTILKIT 280 (357)
Q Consensus 204 ~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~ 280 (357)
+.+++++ ..++.+|....+ +|++|+++++ .++.+ |..+..+++|++|++++ +.++.++... .+++|+.|+++
T Consensus 12 ~~l~~s~-n~l~~ip~~~~~--~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 12 TTVDCSG-KSLASVPTGIPT--TTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDN-NQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TEEECTT-SCCSSCCSCCCT--TCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEeCC-CCcCccCccCCC--CCcEEEcCCC-cCCccChhhhcCcccCCEEECCC-CCcCccChhhccCCCCCCEEECC
Confidence 3444443 344444443322 5555555543 23333 33455555555555555 3455554432 24556666665
Q ss_pred CCCCceecccccccccCCccEEEEec
Q 037573 281 DVNIFKSLFQWGLHRLNSLKELIVNG 306 (357)
Q Consensus 281 ~c~~l~~~~~~~l~~l~~L~~L~l~~ 306 (357)
+ +.++.+++..+..+++|++|++++
T Consensus 87 ~-N~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 87 D-NQLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp S-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred C-CccCEeCHHHhcCCCCCCEEEeCC
Confidence 5 455555444455556666666665
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.57 E-value=2.2e-07 Score=76.44 Aligned_cols=96 Identities=25% Similarity=0.276 Sum_probs=51.2
Q ss_pred EEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhh-HhhhccCCcccceeeccCcCccccCCCC--CCCCcceEEecC
Q 037573 205 QIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEAL-LNGIHRLTSHQQLTVEQCPGIVAIPEND--YPTNLTILKITD 281 (357)
Q Consensus 205 ~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~ 281 (357)
.+++++ ..+..+|....+ +|++|+++++. ++.+ |..+..+++|++|++++ +.++.+|... .+++|++|++++
T Consensus 16 ~l~~~~-n~l~~iP~~~~~--~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 16 LVNCQN-IRLASVPAGIPT--DKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNS-NKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp EEECCS-SCCSSCCSCCCT--TCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEEeCC-CCCCccCCCcCC--CCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCC-CCCCccChhHhCCcchhhEEECCC
Confidence 344443 344445543322 55666665533 3433 34455666666666665 3555555432 245666666666
Q ss_pred CCCceecccccccccCCccEEEEec
Q 037573 282 VNIFKSLFQWGLHRLNSLKELIVNG 306 (357)
Q Consensus 282 c~~l~~~~~~~l~~l~~L~~L~l~~ 306 (357)
+.++.+++..+..+++|++|++.+
T Consensus 91 -N~l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 91 -NHLKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp -SCCCCCCTTTTTTCTTCSEEECCS
T ss_pred -CccceeCHHHhccccCCCEEEeCC
Confidence 556655554455666666666665
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.57 E-value=1.5e-06 Score=81.27 Aligned_cols=186 Identities=15% Similarity=0.166 Sum_probs=90.7
Q ss_pred cccEEeeccCcCcccccc-ccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccccc-ccCCCC
Q 037573 124 RLKYLELIDCECLVNLPQ-ALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPH-ELHKLS 201 (357)
Q Consensus 124 ~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~-~l~~l~ 201 (357)
+|+.+.+.. .+..++. .+..+++|+.+++.+ ..+..++...+. ..+|+.+.+.. .+..++. .+..++
T Consensus 158 ~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~------~~~L~~l~lp~--~l~~I~~~aF~~~~ 226 (401)
T 4fdw_A 158 TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFV------YAGIEEVLLPV--TLKEIGSQAFLKTS 226 (401)
T ss_dssp CCCEEECCT--TCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTT------TCCCSEEECCT--TCCEECTTTTTTCT
T ss_pred CceEEEeCC--CccEehHHHhhCcccCCeeecCC-CcceEechhhEe------ecccCEEEeCC--chheehhhHhhCCC
Confidence 455555543 3444442 455566666666654 345556655554 45566665543 2444432 233455
Q ss_pred CccEEEecCCCCCcccCCCCCCCCCcceEEeccCCcchhhH-hhhccCCcccceeeccCcCcc-----ccCCCCC--CCC
Q 037573 202 RLQQIEIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALL-NGIHRLTSHQQLTVEQCPGIV-----AIPENDY--PTN 273 (357)
Q Consensus 202 ~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~-----~l~~~~~--~~~ 273 (357)
+|+.+.+.. +++.++...+...+|+.+.+.+ .++.++ ..+.++++|+.+.+.+. .+. .++...+ +++
T Consensus 227 ~L~~l~l~~--~l~~I~~~aF~~~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~-~~~~~~~~~I~~~aF~~c~~ 301 (401)
T 4fdw_A 227 QLKTIEIPE--NVSTIGQEAFRESGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGS-TFNDDPEAMIHPYCLEGCPK 301 (401)
T ss_dssp TCCCEECCT--TCCEECTTTTTTCCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESS-CCCCCTTCEECTTTTTTCTT
T ss_pred CCCEEecCC--CccCccccccccCCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCc-cccCCcccEECHHHhhCCcc
Confidence 666666653 3455554433334566665522 233332 24555566666665442 111 2333322 455
Q ss_pred cceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCCCCCCcceEecc
Q 037573 274 LTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEIGSTSLTRLWIR 330 (357)
Q Consensus 274 L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~~~~sL~~L~l~ 330 (357)
|+.+.+.+ .++.+...++..+.+|+++.+.. ++..++...+.-.+|+.+.+.
T Consensus 302 L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~---~l~~I~~~aF~~~~L~~l~l~ 353 (401)
T 4fdw_A 302 LARFEIPE--SIRILGQGLLGGNRKVTQLTIPA---NVTQINFSAFNNTGIKEVKVE 353 (401)
T ss_dssp CCEECCCT--TCCEECTTTTTTCCSCCEEEECT---TCCEECTTSSSSSCCCEEEEC
T ss_pred CCeEEeCC--ceEEEhhhhhcCCCCccEEEECc---cccEEcHHhCCCCCCCEEEEc
Confidence 66665542 35555555555556666666543 344444333211155555544
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.56 E-value=2.7e-06 Score=79.56 Aligned_cols=194 Identities=12% Similarity=0.154 Sum_probs=140.6
Q ss_pred ccccCCCcccEEeeccCcCccccccccCCCCCcCEEeecCCCcchhcccccc-ccccccccccccEEEeeCCCCCccccc
Q 037573 117 SVIQVLCRLKYLELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLELSS-VAEMFAIITSFENIMVNGCDNLKCLPH 195 (357)
Q Consensus 117 ~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~-~L~~L~~l~~L~~L~l~~c~~l~~lp~ 195 (357)
..|..+++|+.+.+.++ .+..++...-...+|+.+.+.. .+..++...+ + +++|+.+++.. ++..++.
T Consensus 174 ~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~------~~~L~~l~l~~--~l~~I~~ 242 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLK------TSQLKTIEIPE--NVSTIGQ 242 (401)
T ss_dssp STTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTT------CTTCCCEECCT--TCCEECT
T ss_pred HHhhCcccCCeeecCCC-cceEechhhEeecccCEEEeCC--chheehhhHhhC------CCCCCEEecCC--CccCccc
Confidence 45778899999999875 4777777544578999999974 5777777655 5 78999999976 4677765
Q ss_pred ccCCCCCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcc----hhhH-hhhccCCcccceeeccCcCccccCCCC
Q 037573 196 ELHKLSRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKL----EALL-NGIHRLTSHQQLTVEQCPGIVAIPEND 269 (357)
Q Consensus 196 ~l~~l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l----~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~ 269 (357)
....-.+|+.+.+.. .++.++...+ .+++|+.+.+.+...- ..++ ..+.++++|+.+.+.+ .++.++...
T Consensus 243 ~aF~~~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~a 318 (401)
T 4fdw_A 243 EAFRESGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGL 318 (401)
T ss_dssp TTTTTCCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTT
T ss_pred cccccCCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhh
Confidence 544447899999964 5677766433 2459999999764321 1233 4678899999999974 588887764
Q ss_pred C--CCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCC--CCCCcceEecc
Q 037573 270 Y--PTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEI--GSTSLTRLWIR 330 (357)
Q Consensus 270 ~--~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~--~~~sL~~L~l~ 330 (357)
+ +.+|+.+.+.. +++.+...++..+ +|+++++.+ +.+..++...+ .+.++..|++-
T Consensus 319 F~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~--n~~~~l~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 319 LGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEG--TTPPQVFEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp TTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECC--SSCCBCCCSSCCCSCTTCCEEEEC
T ss_pred hcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcC--CCCcccccccccCCCCCccEEEeC
Confidence 4 78999999954 5888877778888 999999998 56666655442 23455566543
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.47 E-value=4.6e-07 Score=74.48 Aligned_cols=99 Identities=24% Similarity=0.269 Sum_probs=80.4
Q ss_pred cceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--CCCCCcceEEecCCCCceecccccccccCCccEEEE
Q 037573 227 LTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIV 304 (357)
Q Consensus 227 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l 304 (357)
-+.+++++ +.++.+|..+. ++|++|++++ +.++.++.. ..+++|+.|++++ +.++.++...+..+++|++|++
T Consensus 14 ~~~l~~~~-n~l~~iP~~~~--~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 14 QTLVNCQN-IRLASVPAGIP--TDKQRLWLNN-NQITKLEPGVFDHLVNLQQLYFNS-NKLTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SSEEECCS-SCCSSCCSCCC--TTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEEC
T ss_pred CcEEEeCC-CCCCccCCCcC--CCCcEEEeCC-CCccccCHHHhcCCcCCCEEECCC-CCCCccChhHhCCcchhhEEEC
Confidence 36788877 45788887654 8999999998 567777554 3478999999999 7899888766688999999999
Q ss_pred eccCCCCCcCCCC-CCCCCCcceEecccC
Q 037573 305 NGEFPDMISFPQE-EIGSTSLTRLWIRDF 332 (357)
Q Consensus 305 ~~~c~~l~~l~~~-~~~~~sL~~L~l~~c 332 (357)
++ +.+..+|.. +..+++|++|++++.
T Consensus 89 ~~--N~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 89 ND--NHLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CS--SCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred CC--CccceeCHHHhccccCCCEEEeCCC
Confidence 98 789999876 556899999999863
No 142
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.45 E-value=1.4e-07 Score=77.24 Aligned_cols=86 Identities=13% Similarity=0.198 Sum_probs=48.8
Q ss_pred CcceEEeccCCcchhh-HhhhccCCcccceeeccCcCccccCCC---C---CCCCcceEEecCCCCceecccccccccCC
Q 037573 226 NLTAVCVINCEKLEAL-LNGIHRLTSHQQLTVEQCPGIVAIPEN---D---YPTNLTILKITDVNIFKSLFQWGLHRLNS 298 (357)
Q Consensus 226 ~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~---~---~~~~L~~L~l~~c~~l~~~~~~~l~~l~~ 298 (357)
.|++|++++|. ++.. ...+.++++|++|++++|..+++..-. . .+++|++|++++|.++++.....+..+++
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 56666666665 3322 123455666666666666655432110 0 12357777777777776433334556777
Q ss_pred ccEEEEeccCCCCCc
Q 037573 299 LKELIVNGEFPDMIS 313 (357)
Q Consensus 299 L~~L~l~~~c~~l~~ 313 (357)
|++|++++ |+.++.
T Consensus 141 L~~L~L~~-c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSD-LPGVKE 154 (176)
T ss_dssp CCEEEEES-CTTCCC
T ss_pred CCEEECCC-CCCCCc
Confidence 77777777 776654
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.43 E-value=6e-07 Score=73.45 Aligned_cols=99 Identities=26% Similarity=0.313 Sum_probs=81.2
Q ss_pred CcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCC--CCCCCcceEEecCCCCceecccccccccCCccEEE
Q 037573 226 NLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELI 303 (357)
Q Consensus 226 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~ 303 (357)
+.+.+++++ +.++.+|..+ .++|++|++++ +.++.++.. ..+++|++|++++ +.++.+++..+..+++|++|+
T Consensus 10 ~~~~l~~s~-n~l~~ip~~~--~~~l~~L~L~~-N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 10 SGTTVDCSG-KSLASVPTGI--PTTTQVLYLYD-NQITKLEPGVFDRLTQLTRLDLDN-NQLTVLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp ETTEEECTT-SCCSSCCSCC--CTTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEEeCC-CCcCccCccC--CCCCcEEEcCC-CcCCccChhhhcCcccCCEEECCC-CCcCccChhhccCCCCCCEEE
Confidence 457888887 5578888755 48899999998 578777554 3478999999999 789988877678999999999
Q ss_pred EeccCCCCCcCCCC-CCCCCCcceEeccc
Q 037573 304 VNGEFPDMISFPQE-EIGSTSLTRLWIRD 331 (357)
Q Consensus 304 l~~~c~~l~~l~~~-~~~~~sL~~L~l~~ 331 (357)
+++ +.+..+|.. +..+++|++|++++
T Consensus 85 L~~--N~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 85 LND--NQLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp CCS--SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCC--CccCEeCHHHhcCCCCCCEEEeCC
Confidence 998 789998875 55688999999985
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.40 E-value=7.6e-07 Score=81.42 Aligned_cols=96 Identities=23% Similarity=0.311 Sum_probs=52.7
Q ss_pred EecCCCCCcccCCCCCCCCCcceEEeccCCcchhhH-hhhccCCcccceeeccCcCccccCCC--CCCCCcceEEecCCC
Q 037573 207 EIRNCPSLVSFPERGLPSTNLTAVCVINCEKLEALL-NGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLTILKITDVN 283 (357)
Q Consensus 207 ~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~ 283 (357)
+.++...+..+|. .-.+++|++|++++++.++.++ ..+..+++|++|++++ +.+..++.. ..+++|+.|+|++ |
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~-N 90 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNLSF-N 90 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEECCS-S
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCC-CccceeCHHHhcCCcCCCEEeCCC-C
Confidence 4443224555665 2233456666666544555554 3466666666666666 355555543 2256666666666 5
Q ss_pred CceecccccccccCCccEEEEec
Q 037573 284 IFKSLFQWGLHRLNSLKELIVNG 306 (357)
Q Consensus 284 ~l~~~~~~~l~~l~~L~~L~l~~ 306 (357)
.++.+++..+..++ |+.|++.+
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~ 112 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSG 112 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCS
T ss_pred ccceeCHHHcccCC-ceEEEeeC
Confidence 56655544333333 66666665
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.28 E-value=1.3e-06 Score=80.34 Aligned_cols=151 Identities=13% Similarity=0.230 Sum_probs=76.0
Q ss_pred ccCCCcccEEeeccCcC---------ccccccccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCC
Q 037573 119 IQVLCRLKYLELIDCEC---------LVNLPQALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDN 189 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~---------l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~ 189 (357)
+..+++|+.|.+.+... ...+...+..+|+|+.|.++++..+ .++. + . +++|+.|++..|..
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~------~~~L~~L~L~~~~l 205 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-P------RPNLKSLEIISGGL 205 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-B------CTTCSEEEEECSBC
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-c------CCCCcEEEEecCCC
Confidence 34567788877754321 0123333456778888888776332 2222 1 1 67788888876542
Q ss_pred Cccccccc--CCCCCccEEEecCCC-------CCccc----CCCCCCCCCcceEEeccCCcchhhHhhh---ccCCcccc
Q 037573 190 LKCLPHEL--HKLSRLQQIEIRNCP-------SLVSF----PERGLPSTNLTAVCVINCEKLEALLNGI---HRLTSHQQ 253 (357)
Q Consensus 190 l~~lp~~l--~~l~~L~~L~l~~c~-------~l~~l----~~~~~~~~~L~~L~l~~c~~l~~l~~~~---~~l~~L~~ 253 (357)
-......+ ..+|+|+.|+++.+. .+..+ ....+| +|++|.+.+|......+..+ ..+++|++
T Consensus 206 ~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p--~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~ 283 (362)
T 2ra8_A 206 PDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFP--NLKWLGIVDAEEQNVVVEMFLESDILPQLET 283 (362)
T ss_dssp CHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCT--TCCEEEEESCTTHHHHHHHHHHCSSGGGCSE
T ss_pred ChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCC--CcCEEeCCCCCCchHHHHHHHhCccCCCCCE
Confidence 11111122 257778887775211 11111 112234 77777777665332222212 24566777
Q ss_pred eeeccCcCccc-----cCCC-CCCCCcceEEecC
Q 037573 254 LTVEQCPGIVA-----IPEN-DYPTNLTILKITD 281 (357)
Q Consensus 254 L~l~~c~~l~~-----l~~~-~~~~~L~~L~l~~ 281 (357)
|+++. +.+.. ++.. ..+++|++|++++
T Consensus 284 LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 284 MDISA-GVLTDEGARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp EECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred EECCC-CCCChHHHHHHHhhcccCCcceEEECCC
Confidence 77754 34443 2221 1245666666665
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.27 E-value=1.9e-06 Score=79.30 Aligned_cols=14 Identities=0% Similarity=-0.043 Sum_probs=9.0
Q ss_pred cCCCCCcCEEeecC
Q 037573 143 LHCLSSLTEITVAG 156 (357)
Q Consensus 143 ~~~l~~L~~L~i~~ 156 (357)
+..+++|+.|.+.+
T Consensus 135 ~~~l~~L~~L~l~~ 148 (362)
T 2ra8_A 135 KEKFAHFEGLFWGD 148 (362)
T ss_dssp HHHHTTCSEEEECC
T ss_pred hhhcchhhheeecC
Confidence 44567777777654
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.19 E-value=6.1e-06 Score=75.31 Aligned_cols=100 Identities=16% Similarity=0.181 Sum_probs=67.3
Q ss_pred EeeccCcCccccccccCCCCCcCEEeecCCCcchhcccc-ccccccccccccccEEEeeCCCCCccccc-ccCCCCCccE
Q 037573 128 LELIDCECLVNLPQALHCLSSLTEITVAGCTKLVSFLEL-SSVAEMFAIITSFENIMVNGCDNLKCLPH-ELHKLSRLQQ 205 (357)
Q Consensus 128 L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~-~~~L~~L~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~ 205 (357)
++.++...+..+|. +..+++|++|++++...+..++.. +.. +++|+.|+++++ .+..+|. .+..+++|+.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~------l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~ 84 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRG------LGELRNLTIVKS-GLRFVAPDAFHFTPRLSR 84 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCS------CCCCSEEECCSS-CCCEECTTGGGSCSCCCE
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhcc------ccCCCEEECCCC-ccceeCHHHhcCCcCCCE
Confidence 45555424667777 777888888888764567766643 335 778888888875 4665544 5677888888
Q ss_pred EEecCCCCCcccCCCCCCCCCcceEEeccCC
Q 037573 206 IEIRNCPSLVSFPERGLPSTNLTAVCVINCE 236 (357)
Q Consensus 206 L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 236 (357)
|++++ ..+..+|...+...+|+.|++.++.
T Consensus 85 L~l~~-N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 85 LNLSF-NALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp EECCS-SCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred EeCCC-CccceeCHHHcccCCceEEEeeCCC
Confidence 88886 5677777655443348888887644
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.14 E-value=1.9e-06 Score=70.51 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=17.0
Q ss_pred CcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCC
Q 037573 148 SLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNL 190 (357)
Q Consensus 148 ~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l 190 (357)
.|+.|++++|. +.... ++.|..+++|+.|++++|..+
T Consensus 62 ~L~~LDLs~~~-Itd~G-----L~~L~~~~~L~~L~L~~C~~I 98 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIG-----FDHMEGLQYVEKIRLCKCHYI 98 (176)
T ss_dssp CEEEEEEESCC-CCGGG-----GGGGTTCSCCCEEEEESCTTC
T ss_pred eEeEEeCcCCC-ccHHH-----HHHhcCCCCCCEEEeCCCCcc
Confidence 46666666654 32211 222222555555555555444
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.79 E-value=3.8e-06 Score=77.69 Aligned_cols=126 Identities=21% Similarity=0.253 Sum_probs=63.3
Q ss_pred CCcccEEeeccCcCccc----cccccCC-CCCcCEEeecCCCcchhc--cccccccccccccccccEEEeeCCCCCcc--
Q 037573 122 LCRLKYLELIDCECLVN----LPQALHC-LSSLTEITVAGCTKLVSF--LELSSVAEMFAIITSFENIMVNGCDNLKC-- 192 (357)
Q Consensus 122 l~~L~~L~l~~~~~l~~----lp~~~~~-l~~L~~L~i~~c~~l~~~--~~~~~~L~~L~~l~~L~~L~l~~c~~l~~-- 192 (357)
.++|+.|++++|..-.. +...+.. .++|++|++++|. +... ...... +++|+.|++++|. +..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~------L~~L~~L~Ls~n~-l~~~~ 142 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPV------FLRARKLGLQLNS-LGPEA 142 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHH------HHTEEEEECCSSC-CCHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHH------HHhccHhhcCCCC-CCHHH
Confidence 35777888887763221 2222222 3578888888763 3211 111112 5677778887763 322
Q ss_pred ---ccccc-CCCCCccEEEecCCCCCcccC-----C--CCCCCCCcceEEeccCCcch-----hhHhhhccCCcccceee
Q 037573 193 ---LPHEL-HKLSRLQQIEIRNCPSLVSFP-----E--RGLPSTNLTAVCVINCEKLE-----ALLNGIHRLTSHQQLTV 256 (357)
Q Consensus 193 ---lp~~l-~~l~~L~~L~l~~c~~l~~l~-----~--~~~~~~~L~~L~l~~c~~l~-----~l~~~~~~l~~L~~L~l 256 (357)
+...+ ...++|+.|++++| .+.... . ...+ +|++|++++|. ++ .++..+...++|++|++
T Consensus 143 ~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~--~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~L 218 (372)
T 3un9_A 143 CKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNT--SVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNV 218 (372)
T ss_dssp HHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCS--SCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEEC
T ss_pred HHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCC--CcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEEC
Confidence 11222 23456677777665 232211 1 1122 66666666644 33 22344555566666666
Q ss_pred ccC
Q 037573 257 EQC 259 (357)
Q Consensus 257 ~~c 259 (357)
++|
T Consensus 219 s~N 221 (372)
T 3un9_A 219 AYN 221 (372)
T ss_dssp CSS
T ss_pred CCC
Confidence 664
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.73 E-value=4.7e-06 Score=77.08 Aligned_cols=158 Identities=19% Similarity=0.189 Sum_probs=98.0
Q ss_pred CCCcCEEeecCCCcchhcccc-cccccccc-ccccccEEEeeCCCCCcc--cccccCCCCCccEEEecCCCCCcccCCCC
Q 037573 146 LSSLTEITVAGCTKLVSFLEL-SSVAEMFA-IITSFENIMVNGCDNLKC--LPHELHKLSRLQQIEIRNCPSLVSFPERG 221 (357)
Q Consensus 146 l~~L~~L~i~~c~~l~~~~~~-~~~L~~L~-~l~~L~~L~l~~c~~l~~--lp~~l~~l~~L~~L~l~~c~~l~~l~~~~ 221 (357)
+++|+.|++++|. +...... +.. .|. ..++|+.|++++|. +.. +......+++|+.|++++| .+.......
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~--~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~ 145 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAA--VLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKD 145 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHH--HHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHH--HHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHH
Confidence 5689999999975 4322111 000 000 03689999999975 332 1111223568999999986 443322110
Q ss_pred ------CCCCCcceEEeccCCcch-----hhHhhhccCCcccceeeccCcCccccC-----CC-CCCCCcceEEecCCCC
Q 037573 222 ------LPSTNLTAVCVINCEKLE-----ALLNGIHRLTSHQQLTVEQCPGIVAIP-----EN-DYPTNLTILKITDVNI 284 (357)
Q Consensus 222 ------~~~~~L~~L~l~~c~~l~-----~l~~~~~~l~~L~~L~l~~c~~l~~l~-----~~-~~~~~L~~L~l~~c~~ 284 (357)
-+.++|++|++++|. ++ .++..+...++|++|++++| .+.... .. ..+++|++|++++ +.
T Consensus 146 L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~-N~ 222 (372)
T 3un9_A 146 LRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAY-NG 222 (372)
T ss_dssp HHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCS-SC
T ss_pred HHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCC-CC
Confidence 122489999999976 44 35556778899999999996 454321 11 1256899999999 55
Q ss_pred ceeccc----ccccccCCccEEEEeccCCCCCc
Q 037573 285 FKSLFQ----WGLHRLNSLKELIVNGEFPDMIS 313 (357)
Q Consensus 285 l~~~~~----~~l~~l~~L~~L~l~~~c~~l~~ 313 (357)
++.... ..+...++|++|++++ | .+..
T Consensus 223 i~~~g~~~l~~~L~~~~~L~~L~Ls~-N-~i~~ 253 (372)
T 3un9_A 223 AGDTAALALARAAREHPSLELLHLYF-N-ELSS 253 (372)
T ss_dssp CCHHHHHHHHHHHHHCSSCCEEECTT-S-SCCH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEeccC-C-CCCH
Confidence 663221 1245678999999998 4 5543
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.44 E-value=0.0063 Score=56.25 Aligned_cols=31 Identities=16% Similarity=0.242 Sum_probs=13.5
Q ss_pred cccccEEEeeCCCCCcccccccCCCCCccEEEe
Q 037573 176 ITSFENIMVNGCDNLKCLPHELHKLSRLQQIEI 208 (357)
Q Consensus 176 l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l 208 (357)
+.+|+.+.+.. .+..+......-.+|+.+.+
T Consensus 159 c~~L~~i~~~~--~~~~I~~~aF~~~~l~~i~i 189 (394)
T 4gt6_A 159 CYSLHTVTLPD--SVTAIEERAFTGTALTQIHI 189 (394)
T ss_dssp CTTCCEEECCT--TCCEECTTTTTTCCCSEEEE
T ss_pred ccccccccccc--eeeEeccccccccceeEEEE
Confidence 44555555543 23333332222344555544
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.43 E-value=0.0023 Score=59.22 Aligned_cols=187 Identities=13% Similarity=0.148 Sum_probs=83.2
Q ss_pred ccCCCcccEEeeccCcCcccccc-ccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeCCCCCccccc-c
Q 037573 119 IQVLCRLKYLELIDCECLVNLPQ-ALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNGCDNLKCLPH-E 196 (357)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~c~~l~~lp~-~ 196 (357)
+..+.+|+.+.+... +..++. .+..+..|+.+.+.. ....+....+. ..+|+.+.+.. .+..+.. .
T Consensus 181 F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~--~~~~i~~~~~~------~~~l~~i~ip~--~~~~i~~~~ 248 (394)
T 4fs7_A 181 FSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPN--SLYYLGDFALS------KTGVKNIIIPD--SFTELGKSV 248 (394)
T ss_dssp TTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCT--TCCEECTTTTT------TCCCCEEEECT--TCCEECSST
T ss_pred ccCCCCceEEEcCCC--ceEeCchhhccccccceeecCC--CceEeehhhcc------cCCCceEEECC--Cceeccccc
Confidence 445566666666432 344332 344556666655543 22223322222 44566665543 2233322 2
Q ss_pred cCCCCCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhhHhhhccCCcccceeeccCcCccccCCCCC--CCC
Q 037573 197 LHKLSRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEALLNGIHRLTSHQQLTVEQCPGIVAIPENDY--PTN 273 (357)
Q Consensus 197 l~~l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~ 273 (357)
+..+.+|+.+.+.. .+..+....+ .+..++.+..... .+.. ..+..+.+|+.+.+.+ .++.+....+ +.+
T Consensus 249 f~~~~~l~~~~~~~--~~~~i~~~~F~~~~~l~~~~~~~~-~i~~--~~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~ 321 (394)
T 4fs7_A 249 FYGCTDLESISIQN--NKLRIGGSLFYNCSGLKKVIYGSV-IVPE--KTFYGCSSLTEVKLLD--SVKFIGEEAFESCTS 321 (394)
T ss_dssp TTTCSSCCEEEECC--TTCEECSCTTTTCTTCCEEEECSS-EECT--TTTTTCTTCCEEEECT--TCCEECTTTTTTCTT
T ss_pred ccccccceeEEcCC--CcceeeccccccccccceeccCce-eecc--cccccccccccccccc--ccceechhhhcCCCC
Confidence 33355566655543 2222332111 1124444443221 1111 1344555566655543 3444444322 456
Q ss_pred cceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCC-CCCCcceEec
Q 037573 274 LTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEI-GSTSLTRLWI 329 (357)
Q Consensus 274 L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~-~~~sL~~L~l 329 (357)
|+++++.. .++.+...++..+.+|+++.+.. .++.++...+ .+++|+.+.+
T Consensus 322 L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~---~l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 322 LVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL---SLRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp CCEECCCT--TCCEECTTTTTTCTTCCEECCCT---TCCEECTTTBTTCTTCCEEEE
T ss_pred CCEEEeCC--cccEEhHHhccCCCCCCEEEECc---cccEehHHHhhCCCCCCEEEE
Confidence 66666642 35555555555666666666543 2555544332 2344444443
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.18 E-value=0.036 Score=50.67 Aligned_cols=58 Identities=10% Similarity=0.113 Sum_probs=28.7
Q ss_pred cccCCCcccEEeeccCcCcccccc-ccCCCCCcCEEeecCCCcchhccccccccccccccccccEEEeeC
Q 037573 118 VIQVLCRLKYLELIDCECLVNLPQ-ALHCLSSLTEITVAGCTKLVSFLELSSVAEMFAIITSFENIMVNG 186 (357)
Q Consensus 118 ~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~~~L~~L~~l~~L~~L~l~~ 186 (357)
.|..+.+|+.+.+.. .++.++. .+..+ .|..+.+. .++..++...+. ..+|+.+.+..
T Consensus 64 aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i~~~--~~l~~I~~~aF~------~~~L~~i~lp~ 122 (379)
T 4h09_A 64 NFNSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSYTGM--ERVKKFGDYVFQ------GTDLDDFEFPG 122 (379)
T ss_dssp TTTTCTTCCEEEECT--TCCEECTTTTTTC-CCCEEEEC--TTCCEECTTTTT------TCCCSEEECCT
T ss_pred HhhCCCCCCEEEeCC--cceEechhhhcCC-CCceEECC--ceeeEeccceec------cCCcccccCCC
Confidence 355566666666643 2444443 23333 45555553 234445544443 34566666543
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.18 E-value=0.0059 Score=56.44 Aligned_cols=117 Identities=16% Similarity=0.146 Sum_probs=62.5
Q ss_pred CCCccEEEecCCCCCcccCCCCC-CCCCcceEEeccCCcchhh-HhhhccCCcccceeeccCcCccccCCC--CCCCCcc
Q 037573 200 LSRLQQIEIRNCPSLVSFPERGL-PSTNLTAVCVINCEKLEAL-LNGIHRLTSHQQLTVEQCPGIVAIPEN--DYPTNLT 275 (357)
Q Consensus 200 l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~ 275 (357)
..+|+.+.+.. .+..++...+ .+.+++.+.+... ...+ ...+..+..++.+..... .++.. ..+.+|+
T Consensus 229 ~~~l~~i~ip~--~~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~----~i~~~~F~~~~~L~ 300 (394)
T 4fs7_A 229 KTGVKNIIIPD--SFTELGKSVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSV----IVPEKTFYGCSSLT 300 (394)
T ss_dssp TCCCCEEEECT--TCCEECSSTTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSS----EECTTTTTTCTTCC
T ss_pred cCCCceEEECC--CceecccccccccccceeEEcCCC--cceeeccccccccccceeccCce----eecccccccccccc
Confidence 34555555543 2233332111 1235666655432 1122 123445566666555431 13333 2267899
Q ss_pred eEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCC-CCCCcceEec
Q 037573 276 ILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEI-GSTSLTRLWI 329 (357)
Q Consensus 276 ~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~-~~~sL~~L~l 329 (357)
.+.+.+ .++.+...++..+.+|+++++.. .++.++...+ .+.+|+.+.+
T Consensus 301 ~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~---~v~~I~~~aF~~c~~L~~i~l 350 (394)
T 4fs7_A 301 EVKLLD--SVKFIGEEAFESCTSLVSIDLPY---LVEEIGKRSFRGCTSLSNINF 350 (394)
T ss_dssp EEEECT--TCCEECTTTTTTCTTCCEECCCT---TCCEECTTTTTTCTTCCEECC
T ss_pred cccccc--ccceechhhhcCCCCCCEEEeCC---cccEEhHHhccCCCCCCEEEE
Confidence 998864 47777777788899999998864 3666654432 3455555544
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.08 E-value=0.02 Score=52.78 Aligned_cols=80 Identities=13% Similarity=0.261 Sum_probs=46.2
Q ss_pred hhccCCcccceeeccCcCccccCCCCC--CCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCC-C
Q 037573 244 GIHRLTSHQQLTVEQCPGIVAIPENDY--PTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEI-G 320 (357)
Q Consensus 244 ~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~-~ 320 (357)
.+..+++|+.+.+.. .++.++...+ +.+|+++.+.. .++.+...++..+.+|+++.|-. .++.++...+ .
T Consensus 283 aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~---sv~~I~~~aF~~ 355 (394)
T 4gt6_A 283 AFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS---SVTKIPESAFSN 355 (394)
T ss_dssp TTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT---TCCBCCGGGGTT
T ss_pred ccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc---ccCEEhHhHhhC
Confidence 345566666666643 4555655533 56777777753 36666666666777777777753 3555554332 3
Q ss_pred CCCcceEecc
Q 037573 321 STSLTRLWIR 330 (357)
Q Consensus 321 ~~sL~~L~l~ 330 (357)
+.+|+.+.+.
T Consensus 356 C~~L~~i~~~ 365 (394)
T 4gt6_A 356 CTALNNIEYS 365 (394)
T ss_dssp CTTCCEEEES
T ss_pred CCCCCEEEEC
Confidence 4455555443
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.84 E-value=0.053 Score=49.55 Aligned_cols=79 Identities=11% Similarity=0.115 Sum_probs=44.3
Q ss_pred hccCCcccceeeccCcCccccCCCCC--CCCcceEEecCCCCceecccccccccCCccEEEEeccCCCCCcCCCCCC-CC
Q 037573 245 IHRLTSHQQLTVEQCPGIVAIPENDY--PTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNGEFPDMISFPQEEI-GS 321 (357)
Q Consensus 245 ~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~c~~l~~l~~~~~-~~ 321 (357)
+..+.+|+.+.+.. .++.++...+ +.+|+.+.+.+ +.++.+...++..+.+|+++.+-. .++.++...+ .+
T Consensus 259 F~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~---~l~~I~~~aF~~C 332 (379)
T 4h09_A 259 LQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPT---ALKTIQVYAFKNC 332 (379)
T ss_dssp TTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECC-TTCCEECTTTTTTCTTCCEEECCT---TCCEECTTTTTTC
T ss_pred cceeehhccccccc--cceeccccccccccccccccccc-cccceehhhhhcCCCCCCEEEcCc---cccEEHHHHhhCC
Confidence 44556666666643 3555544422 56777777765 456666666666777777777653 3555544332 23
Q ss_pred CCcceEec
Q 037573 322 TSLTRLWI 329 (357)
Q Consensus 322 ~sL~~L~l 329 (357)
.+|+.+.+
T Consensus 333 ~~L~~i~i 340 (379)
T 4h09_A 333 KALSTISY 340 (379)
T ss_dssp TTCCCCCC
T ss_pred CCCCEEEE
Confidence 44444433
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.03 E-value=0.0041 Score=51.10 Aligned_cols=12 Identities=8% Similarity=-0.075 Sum_probs=6.4
Q ss_pred ccCCccEEEEec
Q 037573 295 RLNSLKELIVNG 306 (357)
Q Consensus 295 ~l~~L~~L~l~~ 306 (357)
..++|++|++++
T Consensus 149 ~n~~L~~L~L~~ 160 (185)
T 1io0_A 149 KNTTLLKFGYHF 160 (185)
T ss_dssp HCSSCCEEECCC
T ss_pred hCCCcCEEeccC
Confidence 345555555554
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.98 E-value=0.0048 Score=53.87 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=16.9
Q ss_pred CCcccEEeeccCcCccc---cccccCCCCCcCEEeecC
Q 037573 122 LCRLKYLELIDCECLVN---LPQALHCLSSLTEITVAG 156 (357)
Q Consensus 122 l~~L~~L~l~~~~~l~~---lp~~~~~l~~L~~L~i~~ 156 (357)
+++|+.|+|+++. +.. +|..+..+++|+.|++++
T Consensus 169 l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~ 205 (267)
T 3rw6_A 169 IPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSG 205 (267)
T ss_dssp CTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTT
T ss_pred CCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCC
Confidence 4555556655543 222 233334555555555554
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.86 E-value=0.0063 Score=53.11 Aligned_cols=80 Identities=13% Similarity=0.108 Sum_probs=45.0
Q ss_pred cccccEEEeeCCCCCcc---cccccCCCCCccEEEecCCCCCcccCC-CCCCCCCcceEEeccCCcchhhH-------hh
Q 037573 176 ITSFENIMVNGCDNLKC---LPHELHKLSRLQQIEIRNCPSLVSFPE-RGLPSTNLTAVCVINCEKLEALL-------NG 244 (357)
Q Consensus 176 l~~L~~L~l~~c~~l~~---lp~~l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~-------~~ 244 (357)
+++|+.|+++++. +.. +|..+..+++|+.|++++ +.+..+.. ..+...+|++|++++++-...+| ..
T Consensus 169 l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCC-CccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 6677777777743 433 334455677777777776 34444422 11211167777777765333222 23
Q ss_pred hccCCcccceeec
Q 037573 245 IHRLTSHQQLTVE 257 (357)
Q Consensus 245 ~~~l~~L~~L~l~ 257 (357)
+..+++|+.|+-.
T Consensus 247 l~~~P~L~~LDg~ 259 (267)
T 3rw6_A 247 RERFPKLLRLDGH 259 (267)
T ss_dssp HHHCTTCCEESSC
T ss_pred HHHCcccCeECCc
Confidence 5667777777643
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.75 E-value=0.0033 Score=51.70 Aligned_cols=103 Identities=16% Similarity=0.101 Sum_probs=53.4
Q ss_pred CcceEEeccCCcch-----hhHhhhccCCcccceeeccCcCcccc-----CCC-CCCCCcceEEecCCCCceec----cc
Q 037573 226 NLTAVCVINCEKLE-----ALLNGIHRLTSHQQLTVEQCPGIVAI-----PEN-DYPTNLTILKITDVNIFKSL----FQ 290 (357)
Q Consensus 226 ~L~~L~l~~c~~l~-----~l~~~~~~l~~L~~L~l~~c~~l~~l-----~~~-~~~~~L~~L~l~~c~~l~~~----~~ 290 (357)
+|++|++++|..++ .+...+...++|++|++++| .+..- ... ...++|++|++++ +.+... ..
T Consensus 37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~-N~i~~~g~~~l~ 114 (185)
T 1io0_A 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVES-NFISGSGILALV 114 (185)
T ss_dssp TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCS-SCCCHHHHHHHH
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcC-CcCCHHHHHHHH
Confidence 56666665552222 23344555566666666664 23210 000 0135677777777 445521 11
Q ss_pred ccccccCCccEEEE--eccCCCCCc-----CCCCCCCCCCcceEecccC
Q 037573 291 WGLHRLNSLKELIV--NGEFPDMIS-----FPQEEIGSTSLTRLWIRDF 332 (357)
Q Consensus 291 ~~l~~l~~L~~L~l--~~~c~~l~~-----l~~~~~~~~sL~~L~l~~c 332 (357)
..+...++|++|++ .+ +.+.. +...+...++|++|+++++
T Consensus 115 ~~L~~n~~L~~L~L~~~~--N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQS--QPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HGGGGCSSCCEEECCCCS--SCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHhCCCceEEEecCCC--CCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 23556678888888 54 55543 2222223467888887765
No 161
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=95.30 E-value=0.0042 Score=46.77 Aligned_cols=31 Identities=23% Similarity=0.562 Sum_probs=27.1
Q ss_pred cchhhhhhhhhhhhhhhhhhhhccCchHHhh
Q 037573 7 AISDDIWLGELQNLAYHLKDILDELDTEALQ 37 (357)
Q Consensus 7 ~~~~~~Wl~~~~~~~~~~~dvld~~~~~~~~ 37 (357)
+..++.|+.++|+++|++||++|++..+...
T Consensus 54 d~~vk~W~~~vrdlaYD~ED~iD~f~~~~~~ 84 (115)
T 3qfl_A 54 DSQDKLWADEVRELSYVIEDVVDKFLVQVDG 84 (115)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4567899999999999999999999888653
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.29 E-value=0.11 Score=39.81 Aligned_cols=41 Identities=24% Similarity=0.342 Sum_probs=27.9
Q ss_pred ccCCCCCCCCcceEEecCCCCceecccccccccCCccEEEEec
Q 037573 264 AIPENDYPTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNG 306 (357)
Q Consensus 264 ~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~ 306 (357)
.+|. +++++|+.|+|++ |.++.++...+..+++|++|+|.+
T Consensus 24 ~vP~-~lp~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 24 SLPT-AFPVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGA 64 (130)
T ss_dssp TSCS-CCCTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCS
T ss_pred cCCC-CCCcCCCEEECCC-CcCCccChhhhhhccccCEEEecC
Confidence 5553 3556777777777 667777666666777777777776
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=84.82 E-value=1.2 Score=33.79 Aligned_cols=33 Identities=12% Similarity=0.125 Sum_probs=15.9
Q ss_pred CccEEEecCCCCCcccCCCCCC-CCCcceEEeccC
Q 037573 202 RLQQIEIRNCPSLVSFPERGLP-STNLTAVCVINC 235 (357)
Q Consensus 202 ~L~~L~l~~c~~l~~l~~~~~~-~~~L~~L~l~~c 235 (357)
+|+.|++++ +.+..++.+.+. +++|+.|++.++
T Consensus 32 ~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTG-NNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCC-CcCCccChhhhhhccccCEEEecCC
Confidence 455555554 345555543321 225555555543
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=67.45 E-value=4.1 Score=33.38 Aligned_cols=59 Identities=20% Similarity=0.249 Sum_probs=29.1
Q ss_pred CCCCccEEEecCCCCCcccC-----CCCCCCCCcceEEeccCCcch-----hhHhhhccCCcccceeecc
Q 037573 199 KLSRLQQIEIRNCPSLVSFP-----ERGLPSTNLTAVCVINCEKLE-----ALLNGIHRLTSHQQLTVEQ 258 (357)
Q Consensus 199 ~l~~L~~L~l~~c~~l~~l~-----~~~~~~~~L~~L~l~~c~~l~-----~l~~~~~~l~~L~~L~l~~ 258 (357)
.-+.|++|+++++..+..-. ...-.-+.|+.|++++|. ++ .+...+..-+.|++|++++
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~ 107 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVES 107 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCC
Confidence 34566777776533332110 000111367777776654 22 2333455556677777765
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=48.91 E-value=16 Score=29.76 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=20.9
Q ss_pred CCcccEEeeccCcCccc-----cccccCCCCCcCEEeecCC
Q 037573 122 LCRLKYLELIDCECLVN-----LPQALHCLSSLTEITVAGC 157 (357)
Q Consensus 122 l~~L~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~i~~c 157 (357)
-+.|+.|+++++..++. +...+..-..|+.|++++|
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n 80 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT 80 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC
Confidence 45677777765422222 3444555666777777764
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=31.14 E-value=57 Score=23.04 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=24.8
Q ss_pred CCCcceEEecCCCCceecccccccccCCccEEEEec
Q 037573 271 PTNLTILKITDVNIFKSLFQWGLHRLNSLKELIVNG 306 (357)
Q Consensus 271 ~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~ 306 (357)
+.+|+++.|-. .++.+....+..+.+|+++.+.+
T Consensus 19 c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 19 NTVIREITVQP--NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECC
T ss_pred CCCCcEEEcCC--chheEcHHHHhccCCccEEEEcC
Confidence 56777777754 46666666677888888888876
No 167
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=29.86 E-value=24 Score=17.14 Aligned_cols=12 Identities=25% Similarity=0.612 Sum_probs=9.1
Q ss_pred hhhhhhhhhhhh
Q 037573 9 SDDIWLGELQNL 20 (357)
Q Consensus 9 ~~~~Wl~~~~~~ 20 (357)
++++|++.+|..
T Consensus 9 SV~rWmeDLr~M 20 (22)
T 3ro3_B 9 SVQRWMEDLKLM 20 (26)
T ss_pred HHHHHHHHHHhh
Confidence 567998888764
Done!