BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037574
(961 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 23/119 (19%)
Query: 274 KVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNGTNMTEIGLGEKDGTNM 333
+ LL+LDDVW + LK+ +IL+T R + ++T+ +G K +
Sbjct: 237 RSLLILDDVW----------DPWVLKAFDNQCQILLTTRDK----SVTDSVMGPKHVVPV 282
Query: 334 TEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKILGSLLR 392
E GLG E SLF + +E ++ +CKG P V ++G+LLR
Sbjct: 283 -ESGLGREKGLEILSLFVNMK--------KEDLPAEAHSIIKECKGSPLVVSLIGALLR 332
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 36.2 bits (82), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 23/119 (19%)
Query: 274 KVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNGTNMTEIGLGEKDGTNM 333
+ LL+LDDVW + + LK+ +IL+T R + ++T+ +G K +
Sbjct: 237 RSLLILDDVWDS----------WVLKAFDSQCQILLTTRDK----SVTDSVMGPKYVVPV 282
Query: 334 TEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKILGSLLR 392
E LG+ E SLF + + +D E+ I + +CKG P V ++G+LLR
Sbjct: 283 -ESSLGKEKGLEILSLFVNM----KKADLPEQAHSI----IKECKGSPLVVSLIGALLR 332
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 36.2 bits (82), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 23/119 (19%)
Query: 274 KVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNGTNMTEIGLGEKDGTNM 333
+ LL+LDDVW + LK+ +IL+T + ++T+ +G K +
Sbjct: 244 RSLLILDDVW----------DPWVLKAFDNQCQILLTTSDK----SVTDSVMGPKHVVPV 289
Query: 334 TEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKILGSLLR 392
E GLG E SLF + +E ++ +CKG P V ++G+LLR
Sbjct: 290 -ESGLGREKGLEILSLFVNMK--------KEDLPAEAHSIIKECKGSPLVVSLIGALLR 339
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 23/119 (19%)
Query: 274 KVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNGTNMTEIGLGEKDGTNM 333
+ LL+LDDVW + + LK+ +IL+T R + ++T+ +G K +
Sbjct: 243 RSLLILDDVWDS----------WVLKAFDSQCQILLTTRDK----SVTDSVMGPKYVVPV 288
Query: 334 TEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKILGSLLR 392
E LG+ E SLF + + +D E+ I + +CKG P V ++G+LLR
Sbjct: 289 -ESSLGKEKGLEILSLFVNM----KKADLPEQAHSI----IKECKGSPLVVSLIGALLR 338
>pdb|3EY9|A Chain A, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EY9|B Chain B, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
Length = 572
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 35 VEKLRNHLKAIQEVLDDAEKRQVKEKAVEDWLRELKDTSYAIDDTLDEWNTAIQKLLLAN 94
V +++ L+A+ ++++ R+ +KA+ED+ +D +DD AI LA
Sbjct: 309 VGDIKSTLRALLPLVEEKADRKFLDKALEDY----RDARKGLDDLAKPSEKAIHPQYLAQ 364
Query: 95 ETDHKASKVRSFTC 108
+ H A+ FTC
Sbjct: 365 QISHFAADDAIFTC 378
>pdb|3EYA|A Chain A, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|B Chain B, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|C Chain C, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|D Chain D, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|E Chain E, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|F Chain F, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|G Chain G, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|H Chain H, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|I Chain I, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|J Chain J, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|K Chain K, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|L Chain L, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
Length = 549
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 35 VEKLRNHLKAIQEVLDDAEKRQVKEKAVEDWLRELKDTSYAIDDTLDEWNTAIQKLLLAN 94
V +++ L+A+ ++++ R+ +KA+ED+ +D +DD AI LA
Sbjct: 309 VGDIKSTLRALLPLVEEKADRKFLDKALEDY----RDARKGLDDLAKPSEKAIHPQYLAQ 364
Query: 95 ETDHKASKVRSFTC 108
+ H A+ FTC
Sbjct: 365 QISHFAADDAIFTC 378
>pdb|3GG2|A Chain A, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
pdb|3GG2|B Chain B, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
pdb|3GG2|C Chain C, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
pdb|3GG2|D Chain D, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
Length = 450
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 22/144 (15%)
Query: 7 VSTVLDQLSSITQQMNEARLVVGGVVTDVEKLRNHLKAIQEVLDDAEKRQV--------- 57
+S VLD SI + M+ L+V V R KAIQE LD KR+V
Sbjct: 98 MSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQEELD---KREVLIDFDIASN 154
Query: 58 -----KEKAVEDWLRELKDTSYAIDDTLDEWNTAIQKLLLANE-----TDHKASKVRSFT 107
+ A++D+++ + D E T++ K +L N D ++++ +
Sbjct: 155 PEFLKEGNAIDDFMKPDRVVVGVDSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYA 214
Query: 108 CHLPIALRFDIGCKLKNLSRRVDA 131
+ +A R + NL RV A
Sbjct: 215 ANAMLATRISFMNDVANLCERVGA 238
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 651 LYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLSYMPKGIE 696
L NLQ+L L W + +R+LP + L NL+ + +PLS + I
Sbjct: 182 LVNLQSLRLEW-TGIRSLPASIANLQNLKSLKIRNSPLSALGPAIH 226
>pdb|1JMU|B Chain B, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
pdb|1JMU|D Chain D, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
pdb|1JMU|F Chain F, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
Length = 666
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 652 YNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGT 686
YN++TL++ + LR +P+ MG L ++ N GT
Sbjct: 279 YNVRTLKIDEATWLRMIPKTMGTLFQIQVTDNTGT 313
>pdb|2CSE|A Chain A, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|B Chain B, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|C Chain C, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|P Chain P, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|Q Chain Q, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|R Chain R, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|J Chain J, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|K Chain K, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|L Chain L, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|T Chain T, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
Length = 708
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 652 YNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGT 686
YN++TL++ + LR +P+ MG L ++ N GT
Sbjct: 321 YNVRTLKIDEATWLRMIPKTMGTLFQIQVTDNTGT 355
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,611,197
Number of Sequences: 62578
Number of extensions: 996509
Number of successful extensions: 2533
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2521
Number of HSP's gapped (non-prelim): 25
length of query: 961
length of database: 14,973,337
effective HSP length: 108
effective length of query: 853
effective length of database: 8,214,913
effective search space: 7007320789
effective search space used: 7007320789
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)