Query 037574
Match_columns 961
No_of_seqs 453 out of 4057
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 13:41:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037574.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037574hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.3E-91 4.9E-96 827.4 42.7 832 6-941 4-862 (889)
2 PLN03210 Resistant to P. syrin 100.0 1E-61 2.2E-66 609.4 47.1 671 161-941 182-908 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 3.4E-44 7.4E-49 387.7 15.5 282 168-475 1-286 (287)
4 PLN00113 leucine-rich repeat r 99.8 6.5E-21 1.4E-25 241.4 15.4 356 547-939 92-465 (968)
5 PLN00113 leucine-rich repeat r 99.8 5.1E-21 1.1E-25 242.3 14.5 353 548-937 140-510 (968)
6 KOG0444 Cytoskeletal regulator 99.8 1.8E-22 4E-27 215.7 -5.7 340 549-943 33-379 (1255)
7 KOG0444 Cytoskeletal regulator 99.8 2.3E-21 4.9E-26 207.5 -5.7 322 547-921 54-380 (1255)
8 PLN03210 Resistant to P. syrin 99.8 1.6E-18 3.4E-23 219.3 17.3 338 546-940 587-944 (1153)
9 KOG4194 Membrane glycoprotein 99.8 5E-20 1.1E-24 196.4 2.9 271 546-852 76-356 (873)
10 KOG4194 Membrane glycoprotein 99.8 2.5E-19 5.5E-24 191.1 2.8 339 547-934 101-447 (873)
11 KOG0472 Leucine-rich repeat pr 99.6 1.1E-17 2.3E-22 171.3 -7.7 339 547-937 182-539 (565)
12 KOG0618 Serine/threonine phosp 99.5 4.8E-16 1E-20 175.5 -5.5 125 550-686 23-147 (1081)
13 KOG0472 Leucine-rich repeat pr 99.5 1.1E-16 2.4E-21 164.0 -9.8 141 551-704 71-211 (565)
14 PRK04841 transcriptional regul 99.5 2.9E-12 6.2E-17 161.9 26.2 298 162-525 13-332 (903)
15 KOG0618 Serine/threonine phosp 99.5 2.7E-15 5.8E-20 169.6 -4.2 224 677-938 242-488 (1081)
16 PRK00411 cdc6 cell division co 99.4 1.8E-10 3.9E-15 130.3 29.2 324 161-515 28-375 (394)
17 TIGR03015 pepcterm_ATPase puta 99.3 2.1E-10 4.6E-15 122.5 19.4 193 193-391 42-242 (269)
18 KOG4658 Apoptotic ATPase [Sign 99.3 3.3E-12 7.3E-17 153.4 5.8 266 568-920 519-787 (889)
19 PRK15387 E3 ubiquitin-protein 99.3 4.1E-11 9E-16 140.9 14.4 254 550-914 203-456 (788)
20 KOG0617 Ras suppressor protein 99.3 1.7E-13 3.7E-18 124.6 -4.2 129 567-706 28-157 (264)
21 KOG0617 Ras suppressor protein 99.3 1.9E-13 4.1E-18 124.3 -4.3 145 548-705 33-179 (264)
22 COG2909 MalT ATP-dependent tra 99.2 1.9E-09 4.2E-14 122.8 22.9 299 162-527 18-340 (894)
23 TIGR02928 orc1/cdc6 family rep 99.2 9.6E-09 2.1E-13 115.0 27.8 312 161-500 13-351 (365)
24 PRK15387 E3 ubiquitin-protein 99.1 2.2E-10 4.8E-15 134.8 12.1 115 788-937 341-456 (788)
25 PF01637 Arch_ATPase: Archaeal 99.1 3E-10 6.5E-15 118.7 10.9 202 165-386 1-233 (234)
26 PRK15370 E3 ubiquitin-protein 99.1 2.6E-10 5.6E-15 135.2 10.6 124 549-695 179-302 (754)
27 PRK00080 ruvB Holliday junctio 99.1 9.3E-10 2E-14 120.3 13.5 267 162-500 24-311 (328)
28 PRK15370 E3 ubiquitin-protein 99.0 5.4E-10 1.2E-14 132.6 10.1 247 573-883 179-425 (754)
29 TIGR00635 ruvB Holliday juncti 99.0 1.8E-09 3.9E-14 117.5 13.0 279 163-500 4-290 (305)
30 PF05729 NACHT: NACHT domain 98.9 6.5E-09 1.4E-13 102.1 11.7 147 195-354 1-163 (166)
31 COG3899 Predicted ATPase [Gene 98.9 2.8E-08 6.1E-13 120.5 17.9 318 165-524 2-385 (849)
32 KOG4237 Extracellular matrix p 98.9 3.8E-10 8.3E-15 116.6 1.4 109 589-704 81-193 (498)
33 COG2256 MGS1 ATPase related to 98.9 2.5E-08 5.4E-13 104.6 14.2 178 160-384 27-209 (436)
34 PTZ00112 origin recognition co 98.8 4.8E-07 1E-11 104.4 23.5 311 162-498 754-1085(1164)
35 cd00116 LRR_RI Leucine-rich re 98.8 7.1E-10 1.5E-14 122.0 0.9 122 567-689 18-150 (319)
36 PRK06893 DNA replication initi 98.8 8.5E-08 1.8E-12 98.8 14.4 155 194-389 39-205 (229)
37 PTZ00202 tuzin; Provisional 98.7 1.3E-06 2.7E-11 93.7 20.9 175 157-354 256-434 (550)
38 PRK13342 recombination factor 98.7 2.1E-07 4.5E-12 105.0 15.5 179 164-388 13-197 (413)
39 KOG4237 Extracellular matrix p 98.7 9.5E-10 2.1E-14 113.8 -3.6 243 600-856 68-341 (498)
40 PF13401 AAA_22: AAA domain; P 98.6 1.4E-07 3E-12 88.4 9.1 118 193-313 3-125 (131)
41 PRK07003 DNA polymerase III su 98.6 2.4E-06 5.3E-11 98.4 19.0 181 163-387 16-221 (830)
42 cd00116 LRR_RI Leucine-rich re 98.6 3.4E-08 7.5E-13 108.6 4.1 64 755-823 249-317 (319)
43 PRK05564 DNA polymerase III su 98.6 1.5E-06 3.3E-11 94.4 16.5 181 164-387 5-190 (313)
44 TIGR03420 DnaA_homol_Hda DnaA 98.5 7.6E-07 1.6E-11 92.3 12.8 181 168-390 22-204 (226)
45 TIGR02903 spore_lon_C ATP-depe 98.5 2.3E-05 4.9E-10 92.4 25.9 203 163-390 154-398 (615)
46 PF14580 LRR_9: Leucine-rich r 98.5 9.5E-08 2E-12 92.3 4.7 128 569-710 16-151 (175)
47 KOG3207 Beta-tubulin folding c 98.5 3.8E-08 8.2E-13 103.7 1.8 213 624-912 117-335 (505)
48 PF13191 AAA_16: AAA ATPase do 98.5 3E-07 6.5E-12 92.0 8.2 47 164-217 1-47 (185)
49 PRK12402 replication factor C 98.5 3E-06 6.5E-11 93.8 16.1 197 163-386 15-225 (337)
50 PRK04195 replication factor C 98.5 1.8E-05 3.9E-10 91.3 22.9 249 163-474 14-272 (482)
51 cd00009 AAA The AAA+ (ATPases 98.5 2E-06 4.3E-11 82.4 12.7 125 166-315 1-131 (151)
52 PRK14961 DNA polymerase III su 98.5 5.4E-06 1.2E-10 91.8 17.5 192 163-384 16-217 (363)
53 KOG2028 ATPase related to the 98.4 3.6E-06 7.8E-11 86.7 14.2 161 192-382 160-331 (554)
54 cd01128 rho_factor Transcripti 98.4 3.9E-07 8.5E-12 93.8 7.4 91 192-283 14-113 (249)
55 KOG0532 Leucine-rich repeat (L 98.4 1.4E-08 3E-13 110.1 -3.4 95 601-704 145-239 (722)
56 PRK14949 DNA polymerase III su 98.4 6.7E-06 1.4E-10 96.9 17.9 182 163-385 16-218 (944)
57 PRK14963 DNA polymerase III su 98.4 1.2E-06 2.6E-11 100.0 11.4 197 164-384 15-214 (504)
58 PF13173 AAA_14: AAA domain 98.4 9.5E-07 2.1E-11 82.0 8.8 126 194-346 2-127 (128)
59 PRK14960 DNA polymerase III su 98.4 6.2E-06 1.3E-10 94.2 16.8 193 163-385 15-217 (702)
60 PRK08727 hypothetical protein; 98.4 5.3E-06 1.2E-10 85.7 14.8 158 194-384 41-201 (233)
61 PF05496 RuvB_N: Holliday junc 98.4 8E-06 1.7E-10 80.5 14.7 181 162-389 23-223 (233)
62 KOG0532 Leucine-rich repeat (L 98.4 1.2E-08 2.5E-13 110.6 -5.6 161 551-729 78-238 (722)
63 KOG1259 Nischarin, modulator o 98.4 6.2E-08 1.3E-12 96.7 -0.4 133 546-693 282-416 (490)
64 COG1474 CDC6 Cdc6-related prot 98.4 2E-05 4.3E-10 86.2 18.8 216 162-389 16-240 (366)
65 PRK14957 DNA polymerase III su 98.3 1E-05 2.3E-10 92.5 16.8 185 163-388 16-222 (546)
66 PLN03025 replication factor C 98.3 1.2E-05 2.6E-10 87.6 16.7 183 163-384 13-197 (319)
67 PF14580 LRR_9: Leucine-rich r 98.3 3.8E-07 8.3E-12 88.1 4.3 107 595-712 15-123 (175)
68 PRK12323 DNA polymerase III su 98.3 1.3E-05 2.9E-10 91.3 17.1 196 163-387 16-225 (700)
69 PRK00440 rfc replication facto 98.3 2E-05 4.4E-10 86.5 18.1 181 163-384 17-200 (319)
70 PRK13341 recombination factor 98.3 6E-06 1.3E-10 98.0 14.1 177 163-382 28-212 (725)
71 COG3903 Predicted ATPase [Gene 98.3 1.9E-06 4.2E-11 91.5 8.3 277 192-498 12-291 (414)
72 PRK07940 DNA polymerase III su 98.3 2.8E-05 6.2E-10 85.9 17.5 185 164-387 6-213 (394)
73 PRK14956 DNA polymerase III su 98.3 1.7E-05 3.6E-10 88.3 15.5 189 163-382 18-217 (484)
74 PRK08691 DNA polymerase III su 98.3 2E-05 4.4E-10 91.0 16.7 183 163-386 16-219 (709)
75 PRK07994 DNA polymerase III su 98.3 2.6E-05 5.7E-10 90.6 17.8 194 163-387 16-220 (647)
76 PRK09376 rho transcription ter 98.3 2.1E-06 4.5E-11 92.0 7.9 91 192-283 167-266 (416)
77 TIGR00678 holB DNA polymerase 98.3 3E-05 6.6E-10 77.5 16.0 91 272-382 95-186 (188)
78 PRK06645 DNA polymerase III su 98.3 3.4E-05 7.4E-10 87.8 18.0 194 164-384 22-226 (507)
79 PRK14964 DNA polymerase III su 98.2 2.8E-05 6E-10 87.7 17.1 182 163-384 13-214 (491)
80 PRK08084 DNA replication initi 98.2 1.7E-05 3.8E-10 82.0 14.4 154 194-388 45-210 (235)
81 KOG3207 Beta-tubulin folding c 98.2 2.5E-07 5.4E-12 97.6 0.6 151 547-706 120-278 (505)
82 PRK07471 DNA polymerase III su 98.2 4.2E-05 9E-10 83.9 17.8 196 162-388 18-239 (365)
83 PRK09087 hypothetical protein; 98.2 1.7E-05 3.7E-10 81.2 13.5 142 194-387 44-195 (226)
84 PRK09112 DNA polymerase III su 98.2 5E-05 1.1E-09 82.8 17.7 196 162-388 22-241 (351)
85 PRK14951 DNA polymerase III su 98.2 3.3E-05 7.1E-10 89.6 16.7 197 163-386 16-224 (618)
86 PF00308 Bac_DnaA: Bacterial d 98.2 3.9E-05 8.4E-10 78.3 15.5 170 193-386 33-207 (219)
87 PRK05896 DNA polymerase III su 98.2 3.4E-05 7.4E-10 88.3 16.5 196 163-388 16-222 (605)
88 PRK14962 DNA polymerase III su 98.2 2.5E-05 5.3E-10 88.6 15.3 187 163-390 14-222 (472)
89 PRK05642 DNA replication initi 98.2 2.9E-05 6.3E-10 80.2 14.6 163 194-389 45-210 (234)
90 PF14516 AAA_35: AAA-like doma 98.2 0.00039 8.4E-09 75.9 24.0 210 159-394 7-246 (331)
91 COG4886 Leucine-rich repeat (L 98.2 9.7E-07 2.1E-11 100.1 3.8 103 595-705 112-215 (394)
92 TIGR02397 dnaX_nterm DNA polym 98.2 6.2E-05 1.3E-09 84.0 17.9 185 163-388 14-219 (355)
93 PRK14958 DNA polymerase III su 98.2 4.7E-05 1E-09 87.3 16.7 183 163-385 16-218 (509)
94 KOG4341 F-box protein containi 98.1 1.2E-07 2.7E-12 99.3 -4.0 293 599-942 138-442 (483)
95 KOG1259 Nischarin, modulator o 98.1 6.6E-07 1.4E-11 89.5 1.0 109 750-884 301-410 (490)
96 PRK08903 DnaA regulatory inact 98.1 5.1E-05 1.1E-09 78.5 14.6 161 193-391 41-203 (227)
97 PF13855 LRR_8: Leucine rich r 98.1 3.3E-06 7.1E-11 66.7 4.1 56 629-686 2-59 (61)
98 PRK14969 DNA polymerase III su 98.1 0.0001 2.2E-09 85.2 17.8 184 163-387 16-221 (527)
99 TIGR01242 26Sp45 26S proteasom 98.1 7.2E-05 1.6E-09 83.2 16.1 189 161-381 120-328 (364)
100 PRK14955 DNA polymerase III su 98.1 6E-05 1.3E-09 84.5 15.2 200 163-385 16-226 (397)
101 PRK09111 DNA polymerase III su 98.1 9.5E-05 2.1E-09 86.1 16.9 198 163-387 24-233 (598)
102 PRK14970 DNA polymerase III su 98.0 0.00015 3.3E-09 81.0 17.6 180 163-382 17-204 (367)
103 TIGR00767 rho transcription te 98.0 1.2E-05 2.7E-10 86.6 8.3 90 193-283 167-265 (415)
104 PLN03150 hypothetical protein; 98.0 1.3E-05 2.8E-10 95.4 9.1 91 601-696 420-511 (623)
105 PRK14952 DNA polymerase III su 98.0 0.00021 4.5E-09 82.8 17.7 198 163-390 13-223 (584)
106 PRK14087 dnaA chromosomal repl 98.0 0.0002 4.2E-09 81.3 17.0 176 194-389 141-321 (450)
107 PF13855 LRR_8: Leucine rich r 98.0 7.8E-06 1.7E-10 64.5 4.0 58 599-663 1-60 (61)
108 PRK07764 DNA polymerase III su 98.0 0.0002 4.4E-09 86.3 17.7 191 164-384 16-218 (824)
109 KOG2227 Pre-initiation complex 98.0 0.00015 3.3E-09 78.0 14.5 221 161-391 148-376 (529)
110 PRK14959 DNA polymerase III su 97.9 0.00021 4.6E-09 82.4 16.7 199 163-391 16-225 (624)
111 PLN03150 hypothetical protein; 97.9 1.6E-05 3.4E-10 94.6 7.6 108 573-688 419-527 (623)
112 PRK07133 DNA polymerase III su 97.9 0.00035 7.6E-09 81.9 18.2 194 163-388 18-221 (725)
113 KOG2543 Origin recognition com 97.9 0.00043 9.4E-09 72.7 16.8 175 162-353 5-192 (438)
114 PRK14953 DNA polymerase III su 97.9 0.00038 8.3E-09 79.4 18.1 185 163-388 16-221 (486)
115 PRK14950 DNA polymerase III su 97.9 0.00016 3.5E-09 85.2 15.4 196 163-387 16-221 (585)
116 KOG4341 F-box protein containi 97.9 9.3E-07 2E-11 92.9 -3.2 148 755-923 293-446 (483)
117 PRK14954 DNA polymerase III su 97.9 0.00026 5.7E-09 82.6 16.2 201 163-386 16-228 (620)
118 PF05621 TniB: Bacterial TniB 97.9 0.00052 1.1E-08 71.3 16.3 203 170-385 44-259 (302)
119 COG4886 Leucine-rich repeat (L 97.9 9.5E-06 2.1E-10 92.0 4.0 125 569-705 113-238 (394)
120 CHL00181 cbbX CbbX; Provisiona 97.9 0.00029 6.2E-09 74.9 14.8 144 195-356 60-211 (287)
121 PHA02544 44 clamp loader, smal 97.9 0.00022 4.7E-09 78.1 14.3 150 162-352 20-171 (316)
122 PRK08451 DNA polymerase III su 97.8 0.00073 1.6E-08 77.1 18.5 181 163-387 14-218 (535)
123 PRK14971 DNA polymerase III su 97.8 0.00053 1.2E-08 80.6 18.0 181 163-384 17-219 (614)
124 PRK06305 DNA polymerase III su 97.8 0.00053 1.1E-08 77.8 16.9 183 163-387 17-223 (451)
125 PRK03992 proteasome-activating 97.8 0.0003 6.5E-09 78.6 14.7 169 161-356 129-317 (389)
126 PRK14948 DNA polymerase III su 97.8 0.00064 1.4E-08 79.9 18.0 197 163-387 16-222 (620)
127 PRK11331 5-methylcytosine-spec 97.8 0.00012 2.6E-09 80.5 11.0 121 163-300 175-299 (459)
128 PF05673 DUF815: Protein of un 97.8 0.0011 2.3E-08 66.8 16.2 111 159-300 23-133 (249)
129 TIGR02881 spore_V_K stage V sp 97.8 0.00034 7.4E-09 73.9 13.7 173 164-356 7-193 (261)
130 COG3267 ExeA Type II secretory 97.8 0.0016 3.4E-08 65.3 17.0 191 192-390 49-248 (269)
131 PRK14086 dnaA chromosomal repl 97.8 0.00083 1.8E-08 77.2 17.3 155 195-381 315-482 (617)
132 TIGR03345 VI_ClpV1 type VI sec 97.8 0.0003 6.5E-09 86.0 14.7 160 163-353 187-362 (852)
133 TIGR00362 DnaA chromosomal rep 97.8 0.00078 1.7E-08 76.2 17.1 166 194-383 136-306 (405)
134 PF12799 LRR_4: Leucine Rich r 97.7 3.1E-05 6.6E-10 55.9 3.6 38 629-668 2-39 (44)
135 PRK14088 dnaA chromosomal repl 97.7 0.00072 1.6E-08 76.7 16.2 166 194-382 130-300 (440)
136 COG0593 DnaA ATPase involved i 97.7 0.00039 8.4E-09 75.9 13.3 155 193-374 112-277 (408)
137 KOG2120 SCF ubiquitin ligase, 97.7 1.9E-06 4.2E-11 86.4 -4.3 166 748-938 202-375 (419)
138 TIGR02639 ClpA ATP-dependent C 97.7 0.00047 1E-08 83.7 14.8 163 164-354 183-358 (731)
139 TIGR02880 cbbX_cfxQ probable R 97.7 0.00082 1.8E-08 71.5 14.8 143 195-355 59-209 (284)
140 PRK15386 type III secretion pr 97.7 0.0001 2.2E-09 80.1 7.8 31 903-935 156-186 (426)
141 PRK06647 DNA polymerase III su 97.7 0.0014 3E-08 76.2 17.6 194 163-386 16-219 (563)
142 PRK07399 DNA polymerase III su 97.7 0.0021 4.6E-08 69.2 17.8 196 164-387 5-221 (314)
143 PRK00149 dnaA chromosomal repl 97.7 0.0011 2.3E-08 76.1 16.5 166 194-383 148-318 (450)
144 PRK05707 DNA polymerase III su 97.7 0.00076 1.6E-08 73.0 14.3 98 272-387 105-203 (328)
145 COG2255 RuvB Holliday junction 97.6 0.00099 2.2E-08 67.3 13.7 177 163-385 26-221 (332)
146 PRK14965 DNA polymerase III su 97.6 0.0012 2.5E-08 77.6 16.7 195 163-387 16-221 (576)
147 PRK05563 DNA polymerase III su 97.6 0.0019 4.2E-08 75.3 18.5 193 163-385 16-218 (559)
148 KOG0989 Replication factor C, 97.6 0.00071 1.5E-08 69.1 12.7 186 162-382 35-225 (346)
149 PRK12422 chromosomal replicati 97.6 0.00058 1.3E-08 77.2 13.0 163 194-380 141-306 (445)
150 PRK06620 hypothetical protein; 97.6 0.00065 1.4E-08 68.9 11.5 142 195-384 45-186 (214)
151 CHL00095 clpC Clp protease ATP 97.5 0.00066 1.4E-08 83.5 13.5 161 163-353 179-353 (821)
152 PRK10536 hypothetical protein; 97.5 0.001 2.3E-08 67.8 12.4 132 162-313 54-212 (262)
153 PF00004 AAA: ATPase family as 97.5 0.00023 4.9E-09 66.5 7.3 96 197-313 1-111 (132)
154 smart00382 AAA ATPases associa 97.5 0.00069 1.5E-08 64.0 10.5 85 195-283 3-88 (148)
155 PRK08116 hypothetical protein; 97.5 0.00047 1E-08 72.6 10.0 102 195-312 115-219 (268)
156 COG0542 clpA ATP-binding subun 97.5 0.0035 7.6E-08 73.7 17.7 128 164-301 492-620 (786)
157 TIGR00602 rad24 checkpoint pro 97.5 0.0011 2.4E-08 77.4 13.7 215 161-384 82-320 (637)
158 PRK10787 DNA-binding ATP-depen 97.5 0.0045 9.8E-08 75.0 19.2 167 162-354 321-506 (784)
159 PRK08769 DNA polymerase III su 97.5 0.0029 6.3E-08 67.8 15.6 96 272-388 112-209 (319)
160 TIGR03689 pup_AAA proteasome A 97.4 0.0026 5.6E-08 72.3 15.5 174 163-354 182-378 (512)
161 PF12799 LRR_4: Leucine Rich r 97.4 0.00015 3.3E-09 52.3 3.7 41 599-646 1-41 (44)
162 COG0466 Lon ATP-dependent Lon 97.4 0.0038 8.3E-08 71.3 16.2 168 161-354 321-508 (782)
163 PRK11034 clpA ATP-dependent Cl 97.4 0.0018 3.8E-08 77.8 14.0 163 164-354 187-362 (758)
164 COG1373 Predicted ATPase (AAA+ 97.4 0.0024 5.2E-08 71.3 14.2 153 196-386 39-191 (398)
165 KOG2004 Mitochondrial ATP-depe 97.4 0.0057 1.2E-07 69.6 16.7 172 161-354 409-596 (906)
166 PRK06871 DNA polymerase III su 97.4 0.0084 1.8E-07 64.5 17.5 95 271-385 105-201 (325)
167 KOG3665 ZYG-1-like serine/thre 97.4 0.00014 2.9E-09 86.3 4.1 132 547-689 121-263 (699)
168 KOG0531 Protein phosphatase 1, 97.4 5.3E-05 1.1E-09 86.0 0.6 89 595-693 91-179 (414)
169 PRK08058 DNA polymerase III su 97.3 0.0047 1E-07 67.4 15.7 163 165-353 7-181 (329)
170 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0026 5.6E-08 78.6 15.1 159 164-354 174-349 (852)
171 PF13177 DNA_pol3_delta2: DNA 97.3 0.003 6.4E-08 61.1 11.9 122 167-315 1-143 (162)
172 PF04665 Pox_A32: Poxvirus A32 97.3 0.0011 2.4E-08 67.2 9.1 37 194-232 13-49 (241)
173 KOG3665 ZYG-1-like serine/thre 97.3 0.00015 3.3E-09 85.9 3.3 110 571-688 121-232 (699)
174 KOG2982 Uncharacterized conser 97.3 0.00012 2.6E-09 73.8 1.9 202 596-844 68-287 (418)
175 TIGR00763 lon ATP-dependent pr 97.3 0.0077 1.7E-07 73.8 17.8 166 163-354 320-505 (775)
176 PTZ00454 26S protease regulato 97.3 0.0068 1.5E-07 67.5 15.8 167 163-355 145-330 (398)
177 KOG2120 SCF ubiquitin ligase, 97.2 2E-05 4.4E-10 79.3 -3.7 85 599-687 185-271 (419)
178 KOG0531 Protein phosphatase 1, 97.2 5.6E-05 1.2E-09 85.8 -1.1 99 597-705 70-168 (414)
179 PRK15386 type III secretion pr 97.2 0.00043 9.4E-09 75.4 5.7 83 548-650 52-136 (426)
180 PRK06090 DNA polymerase III su 97.2 0.014 2.9E-07 62.7 16.9 94 272-388 107-202 (319)
181 PRK12377 putative replication 97.2 0.0011 2.4E-08 68.4 8.3 101 194-312 101-204 (248)
182 KOG4579 Leucine-rich repeat (L 97.2 3.9E-05 8.4E-10 68.4 -2.1 96 601-704 29-128 (177)
183 PRK10865 protein disaggregatio 97.2 0.0055 1.2E-07 75.4 15.6 45 163-217 178-222 (857)
184 PTZ00361 26 proteosome regulat 97.2 0.0032 6.9E-08 70.5 12.3 168 163-355 183-368 (438)
185 PRK08118 topology modulation p 97.2 0.00018 4E-09 69.9 2.0 35 195-229 2-37 (167)
186 PRK08181 transposase; Validate 97.1 0.0021 4.6E-08 67.2 9.6 101 195-314 107-209 (269)
187 KOG1909 Ran GTPase-activating 97.1 0.00021 4.7E-09 74.0 1.9 248 567-847 25-309 (382)
188 TIGR02639 ClpA ATP-dependent C 97.1 0.0063 1.4E-07 74.1 14.8 126 163-301 454-580 (731)
189 PRK12608 transcription termina 97.1 0.0031 6.7E-08 68.1 10.6 101 171-282 119-229 (380)
190 TIGR03346 chaperone_ClpB ATP-d 97.1 0.0061 1.3E-07 75.4 14.8 141 163-313 565-717 (852)
191 TIGR02640 gas_vesic_GvpN gas v 97.1 0.011 2.3E-07 62.4 14.5 42 196-242 23-64 (262)
192 COG2607 Predicted ATPase (AAA+ 97.1 0.0038 8.3E-08 61.6 9.9 123 160-313 57-182 (287)
193 PRK07993 DNA polymerase III su 97.1 0.021 4.5E-07 62.2 16.8 179 171-387 10-204 (334)
194 TIGR01241 FtsH_fam ATP-depende 97.0 0.018 4E-07 66.9 17.4 187 162-380 54-259 (495)
195 PRK10865 protein disaggregatio 97.0 0.0079 1.7E-07 74.1 14.6 141 163-313 568-720 (857)
196 PRK13531 regulatory ATPase Rav 96.9 0.006 1.3E-07 68.1 11.3 159 164-353 21-193 (498)
197 PRK08939 primosomal protein Dn 96.9 0.0074 1.6E-07 64.7 11.8 121 167-312 135-259 (306)
198 PRK07952 DNA replication prote 96.9 0.0062 1.3E-07 62.8 10.7 102 194-312 99-203 (244)
199 TIGR03345 VI_ClpV1 type VI sec 96.9 0.0041 9E-08 76.2 11.1 138 163-312 566-717 (852)
200 PRK06964 DNA polymerase III su 96.9 0.026 5.6E-07 61.2 15.8 94 272-388 131-226 (342)
201 CHL00176 ftsH cell division pr 96.9 0.0099 2.2E-07 70.1 13.7 185 163-379 183-386 (638)
202 PHA00729 NTP-binding motif con 96.9 0.0053 1.1E-07 61.7 9.7 25 192-216 15-39 (226)
203 PRK09183 transposase/IS protei 96.9 0.0047 1E-07 64.7 9.9 100 194-312 102-204 (259)
204 KOG1859 Leucine-rich repeat pr 96.9 5E-05 1.1E-09 85.4 -5.1 62 629-693 165-226 (1096)
205 TIGR02237 recomb_radB DNA repa 96.9 0.005 1.1E-07 62.7 9.5 87 192-282 10-106 (209)
206 PRK06921 hypothetical protein; 96.9 0.0063 1.4E-07 64.0 10.3 99 194-312 117-223 (266)
207 PF01695 IstB_IS21: IstB-like 96.9 0.0012 2.6E-08 64.8 4.6 98 195-312 48-148 (178)
208 PRK07261 topology modulation p 96.8 0.003 6.5E-08 61.8 7.4 22 196-217 2-23 (171)
209 PRK09361 radB DNA repair and r 96.8 0.0062 1.3E-07 62.9 10.1 87 192-282 21-116 (225)
210 PF02562 PhoH: PhoH-like prote 96.8 0.0021 4.6E-08 63.7 6.2 130 167-313 4-155 (205)
211 PRK06526 transposase; Provisio 96.8 0.004 8.6E-08 64.8 8.4 101 195-314 99-201 (254)
212 PTZ00494 tuzin-like protein; P 96.8 0.093 2E-06 57.0 18.2 173 159-354 367-544 (664)
213 PF10443 RNA12: RNA12 protein; 96.8 0.062 1.3E-06 58.8 17.3 218 168-405 1-297 (431)
214 COG2812 DnaX DNA polymerase II 96.8 0.0076 1.6E-07 68.1 10.6 187 164-381 17-214 (515)
215 KOG1514 Origin recognition com 96.7 0.068 1.5E-06 61.2 17.5 211 164-389 397-623 (767)
216 PRK05541 adenylylsulfate kinas 96.7 0.0043 9.3E-08 61.2 7.5 38 192-231 5-42 (176)
217 COG1484 DnaC DNA replication p 96.7 0.0027 5.9E-08 66.1 6.2 73 194-283 105-177 (254)
218 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.7 0.0098 2.1E-07 56.3 9.5 101 194-317 26-130 (144)
219 KOG1859 Leucine-rich repeat pr 96.7 4.7E-05 1E-09 85.6 -7.2 131 546-691 162-294 (1096)
220 cd03214 ABC_Iron-Siderophores_ 96.7 0.015 3.4E-07 57.5 11.3 120 194-317 25-161 (180)
221 cd01394 radB RadB. The archaea 96.7 0.0097 2.1E-07 61.1 10.1 44 192-237 17-60 (218)
222 PRK04296 thymidine kinase; Pro 96.7 0.0032 6.9E-08 62.8 6.3 114 195-316 3-118 (190)
223 CHL00095 clpC Clp protease ATP 96.7 0.011 2.3E-07 73.0 12.1 129 163-301 509-638 (821)
224 PF07728 AAA_5: AAA domain (dy 96.7 0.00078 1.7E-08 63.6 1.7 89 197-299 2-90 (139)
225 TIGR02902 spore_lonB ATP-depen 96.7 0.0085 1.8E-07 69.8 10.4 44 164-217 66-109 (531)
226 KOG4579 Leucine-rich repeat (L 96.6 0.00042 9.1E-09 61.9 -0.3 87 597-691 51-138 (177)
227 PRK12727 flagellar biosynthesi 96.6 0.14 3.1E-06 58.0 19.1 89 193-283 349-438 (559)
228 smart00763 AAA_PrkA PrkA AAA d 96.6 0.0023 5.1E-08 68.7 5.0 50 164-217 52-101 (361)
229 cd01393 recA_like RecA is a b 96.6 0.012 2.6E-07 60.8 10.2 88 192-282 17-123 (226)
230 KOG1969 DNA replication checkp 96.6 0.007 1.5E-07 69.1 8.8 90 191-299 323-412 (877)
231 cd03247 ABCC_cytochrome_bd The 96.6 0.013 2.9E-07 57.8 10.0 119 194-318 28-161 (178)
232 COG0470 HolB ATPase involved i 96.6 0.019 4E-07 63.2 12.3 148 164-345 2-172 (325)
233 PF08423 Rad51: Rad51; InterP 96.6 0.011 2.4E-07 61.8 9.5 57 193-250 37-97 (256)
234 PRK06835 DNA replication prote 96.5 0.012 2.5E-07 63.7 9.9 101 195-312 184-287 (329)
235 KOG0991 Replication factor C, 96.5 0.013 2.8E-07 57.5 9.0 64 163-237 27-91 (333)
236 cd01123 Rad51_DMC1_radA Rad51_ 96.5 0.015 3.2E-07 60.5 10.5 90 192-282 17-124 (235)
237 KOG2228 Origin recognition com 96.5 0.018 3.8E-07 60.0 10.0 179 163-354 24-219 (408)
238 TIGR01243 CDC48 AAA family ATP 96.5 0.038 8.2E-07 67.6 15.0 189 163-382 178-382 (733)
239 cd01120 RecA-like_NTPases RecA 96.5 0.02 4.4E-07 55.4 10.5 39 196-236 1-39 (165)
240 COG2884 FtsE Predicted ATPase 96.5 0.023 4.9E-07 54.3 9.9 126 193-321 27-204 (223)
241 PRK04132 replication factor C 96.5 0.056 1.2E-06 65.3 15.8 156 202-387 574-731 (846)
242 PF07693 KAP_NTPase: KAP famil 96.5 0.093 2E-06 57.6 16.7 42 169-217 2-43 (325)
243 PRK08699 DNA polymerase III su 96.5 0.041 8.9E-07 59.6 13.4 72 272-353 112-184 (325)
244 PRK11034 clpA ATP-dependent Cl 96.4 0.016 3.4E-07 69.8 11.0 125 164-301 459-584 (758)
245 KOG0741 AAA+-type ATPase [Post 96.4 0.032 6.9E-07 61.4 12.0 156 192-377 536-704 (744)
246 cd03223 ABCD_peroxisomal_ALDP 96.4 0.028 6.1E-07 54.7 10.8 118 194-318 27-152 (166)
247 cd00561 CobA_CobO_BtuR ATP:cor 96.4 0.026 5.6E-07 53.7 10.0 118 195-315 3-139 (159)
248 cd03222 ABC_RNaseL_inhibitor T 96.4 0.018 3.8E-07 56.4 9.3 103 194-317 25-135 (177)
249 cd03228 ABCC_MRP_Like The MRP 96.4 0.017 3.6E-07 56.7 9.1 119 194-319 28-160 (171)
250 cd03238 ABC_UvrA The excision 96.4 0.021 4.5E-07 55.9 9.6 116 193-318 20-153 (176)
251 COG1875 NYN ribonuclease and A 96.4 0.031 6.7E-07 58.9 11.1 131 165-312 226-386 (436)
252 COG1136 SalX ABC-type antimicr 96.4 0.026 5.7E-07 56.7 10.3 64 259-322 146-211 (226)
253 KOG1909 Ran GTPase-activating 96.4 0.0017 3.6E-08 67.6 1.9 122 567-689 87-226 (382)
254 COG1222 RPT1 ATP-dependent 26S 96.4 0.089 1.9E-06 55.5 14.3 196 164-391 152-371 (406)
255 PF00158 Sigma54_activat: Sigm 96.3 0.011 2.5E-07 57.2 7.5 130 165-313 1-143 (168)
256 TIGR01243 CDC48 AAA family ATP 96.3 0.096 2.1E-06 64.2 17.3 189 163-381 453-657 (733)
257 cd01133 F1-ATPase_beta F1 ATP 96.3 0.018 3.8E-07 59.9 9.1 88 193-282 68-172 (274)
258 PF14532 Sigma54_activ_2: Sigm 96.3 0.0057 1.2E-07 57.5 5.1 108 166-314 1-110 (138)
259 PRK06696 uridine kinase; Valid 96.3 0.0094 2E-07 61.3 7.1 43 167-216 2-44 (223)
260 TIGR02238 recomb_DMC1 meiotic 96.3 0.019 4.1E-07 61.8 9.5 60 192-252 94-157 (313)
261 PRK11889 flhF flagellar biosyn 96.3 0.084 1.8E-06 57.4 14.1 106 193-300 240-348 (436)
262 PF13671 AAA_33: AAA domain; P 96.3 0.018 3.9E-07 54.5 8.4 21 196-216 1-21 (143)
263 PF13207 AAA_17: AAA domain; P 96.3 0.0029 6.3E-08 58.0 2.8 21 196-216 1-21 (121)
264 cd03216 ABC_Carb_Monos_I This 96.2 0.016 3.4E-07 56.3 8.0 116 194-316 26-144 (163)
265 cd00983 recA RecA is a bacter 96.2 0.02 4.4E-07 61.2 9.4 84 192-282 53-142 (325)
266 cd00544 CobU Adenosylcobinamid 96.2 0.012 2.6E-07 57.0 7.0 79 197-282 2-82 (169)
267 COG4608 AppF ABC-type oligopep 96.2 0.022 4.9E-07 58.2 9.0 127 193-322 38-178 (268)
268 PRK09354 recA recombinase A; P 96.2 0.024 5.2E-07 61.2 9.7 84 192-282 58-147 (349)
269 TIGR02012 tigrfam_recA protein 96.2 0.017 3.7E-07 61.8 8.5 84 192-282 53-142 (321)
270 PRK05800 cobU adenosylcobinami 96.1 0.0074 1.6E-07 58.7 5.0 80 196-282 3-85 (170)
271 KOG2035 Replication factor C, 96.1 0.028 6.1E-07 56.8 9.0 206 165-408 15-259 (351)
272 TIGR01650 PD_CobS cobaltochela 96.1 0.18 3.8E-06 54.0 15.5 169 164-354 46-233 (327)
273 KOG0733 Nuclear AAA ATPase (VC 96.1 0.1 2.2E-06 58.7 14.0 168 163-356 190-376 (802)
274 PF13604 AAA_30: AAA domain; P 96.1 0.01 2.3E-07 59.4 6.1 106 193-311 17-128 (196)
275 KOG1644 U2-associated snRNP A' 96.1 0.0078 1.7E-07 58.0 4.7 101 549-661 43-149 (233)
276 PLN03187 meiotic recombination 96.1 0.033 7.2E-07 60.4 10.1 60 192-252 124-187 (344)
277 cd03230 ABC_DR_subfamily_A Thi 96.0 0.018 3.9E-07 56.5 7.4 119 194-318 26-159 (173)
278 PRK06067 flagellar accessory p 96.0 0.058 1.3E-06 56.0 11.5 86 192-282 23-129 (234)
279 CHL00195 ycf46 Ycf46; Provisio 96.0 0.059 1.3E-06 61.6 12.1 168 163-356 228-407 (489)
280 TIGR02239 recomb_RAD51 DNA rep 96.0 0.037 8E-07 59.7 10.0 59 192-251 94-156 (316)
281 TIGR03499 FlhF flagellar biosy 96.0 0.027 5.8E-07 60.0 8.8 88 193-282 193-281 (282)
282 PRK13540 cytochrome c biogenes 96.0 0.082 1.8E-06 53.3 12.0 56 265-320 137-193 (200)
283 cd03246 ABCC_Protease_Secretio 96.0 0.037 8.1E-07 54.3 9.2 121 194-318 28-160 (173)
284 PRK04301 radA DNA repair and r 95.9 0.05 1.1E-06 59.3 10.9 58 192-250 100-161 (317)
285 KOG1644 U2-associated snRNP A' 95.9 0.0086 1.9E-07 57.7 4.2 101 600-709 43-150 (233)
286 PF00448 SRP54: SRP54-type pro 95.9 0.031 6.7E-07 55.8 8.4 87 194-282 1-92 (196)
287 PRK13695 putative NTPase; Prov 95.9 0.0097 2.1E-07 58.6 4.7 22 196-217 2-23 (174)
288 KOG0733 Nuclear AAA ATPase (VC 95.9 0.2 4.3E-06 56.5 14.8 159 194-381 545-718 (802)
289 PHA02244 ATPase-like protein 95.8 0.04 8.8E-07 59.4 9.3 21 196-216 121-141 (383)
290 COG0468 RecA RecA/RadA recombi 95.8 0.06 1.3E-06 56.3 10.3 88 192-282 58-150 (279)
291 PRK06762 hypothetical protein; 95.8 0.098 2.1E-06 50.9 11.4 22 195-216 3-24 (166)
292 COG1223 Predicted ATPase (AAA+ 95.8 0.28 6.1E-06 49.3 14.1 181 163-380 121-318 (368)
293 PRK08533 flagellar accessory p 95.7 0.085 1.8E-06 54.3 11.1 50 192-245 22-71 (230)
294 PRK14722 flhF flagellar biosyn 95.7 0.085 1.9E-06 57.7 11.6 89 193-283 136-225 (374)
295 PRK11608 pspF phage shock prot 95.7 0.04 8.6E-07 60.1 9.0 133 164-313 7-150 (326)
296 cd03215 ABC_Carb_Monos_II This 95.7 0.033 7.1E-07 55.2 7.6 52 265-316 114-166 (182)
297 PLN03186 DNA repair protein RA 95.7 0.054 1.2E-06 58.9 9.8 60 192-252 121-184 (342)
298 cd03235 ABC_Metallic_Cations A 95.7 0.078 1.7E-06 54.1 10.6 52 266-317 143-195 (213)
299 KOG0734 AAA+-type ATPase conta 95.7 0.18 4E-06 55.8 13.5 56 164-220 305-363 (752)
300 PRK15429 formate hydrogenlyase 95.7 0.056 1.2E-06 65.7 11.0 135 163-314 376-521 (686)
301 PRK12726 flagellar biosynthesi 95.7 0.089 1.9E-06 57.1 11.1 90 192-283 204-295 (407)
302 COG0572 Udk Uridine kinase [Nu 95.6 0.021 4.5E-07 56.7 5.8 78 192-274 6-85 (218)
303 TIGR02236 recomb_radA DNA repa 95.6 0.078 1.7E-06 57.6 10.9 58 192-250 93-154 (310)
304 PRK09270 nucleoside triphospha 95.6 0.043 9.4E-07 56.6 8.5 25 192-216 31-55 (229)
305 cd03229 ABC_Class3 This class 95.6 0.037 8E-07 54.6 7.6 117 194-317 26-164 (178)
306 COG1618 Predicted nucleotide k 95.6 0.012 2.7E-07 54.5 3.7 24 194-217 5-28 (179)
307 TIGR03877 thermo_KaiC_1 KaiC d 95.6 0.088 1.9E-06 54.6 10.7 49 192-244 19-67 (237)
308 PRK13539 cytochrome c biogenes 95.6 0.11 2.3E-06 52.7 11.1 54 266-319 138-192 (207)
309 cd03369 ABCC_NFT1 Domain 2 of 95.6 0.15 3.2E-06 51.8 12.1 54 265-318 135-188 (207)
310 TIGR01166 cbiO cobalt transpor 95.6 0.12 2.5E-06 51.7 11.2 50 266-315 138-188 (190)
311 PRK08233 hypothetical protein; 95.6 0.034 7.4E-07 55.1 7.3 24 194-217 3-26 (182)
312 TIGR01817 nifA Nif-specific re 95.6 0.057 1.2E-06 63.6 10.3 135 161-313 194-340 (534)
313 KOG1532 GTPase XAB1, interacts 95.6 0.055 1.2E-06 54.6 8.3 86 192-277 17-120 (366)
314 PRK15455 PrkA family serine pr 95.6 0.014 2.9E-07 66.2 4.7 49 164-216 77-125 (644)
315 PTZ00301 uridine kinase; Provi 95.6 0.023 5E-07 57.3 6.0 23 194-216 3-25 (210)
316 cd02025 PanK Pantothenate kina 95.6 0.043 9.3E-07 56.0 8.0 73 196-271 1-76 (220)
317 PF00485 PRK: Phosphoribulokin 95.6 0.044 9.4E-07 55.0 8.0 79 196-277 1-87 (194)
318 PRK13543 cytochrome c biogenes 95.5 0.13 2.9E-06 52.4 11.6 56 265-320 147-203 (214)
319 PF01583 APS_kinase: Adenylyls 95.5 0.017 3.7E-07 54.6 4.5 35 195-231 3-37 (156)
320 cd00267 ABC_ATPase ABC (ATP-bi 95.5 0.042 9.2E-07 52.9 7.5 117 195-319 26-145 (157)
321 TIGR01359 UMP_CMP_kin_fam UMP- 95.5 0.073 1.6E-06 52.8 9.3 21 196-216 1-21 (183)
322 COG1102 Cmk Cytidylate kinase 95.5 0.037 8E-07 51.5 6.3 44 196-252 2-45 (179)
323 COG1121 ZnuC ABC-type Mn/Zn tr 95.5 0.082 1.8E-06 54.1 9.5 123 195-317 31-202 (254)
324 cd03281 ABC_MSH5_euk MutS5 hom 95.5 0.019 4.2E-07 58.3 5.1 122 194-320 29-160 (213)
325 TIGR02974 phageshock_pspF psp 95.4 0.062 1.4E-06 58.5 9.3 45 165-217 1-45 (329)
326 cd01131 PilT Pilus retraction 95.4 0.021 4.5E-07 57.4 5.1 110 195-317 2-112 (198)
327 cd03115 SRP The signal recogni 95.4 0.13 2.7E-06 50.6 10.6 21 196-216 2-22 (173)
328 PRK09544 znuC high-affinity zi 95.4 0.094 2E-06 54.9 10.2 124 194-317 30-184 (251)
329 KOG2739 Leucine-rich acidic nu 95.4 0.0073 1.6E-07 60.8 1.8 38 626-663 63-102 (260)
330 PRK05439 pantothenate kinase; 95.4 0.079 1.7E-06 56.5 9.6 80 192-274 84-166 (311)
331 PRK00771 signal recognition pa 95.4 0.24 5.1E-06 55.8 13.8 57 193-251 94-151 (437)
332 PF03215 Rad17: Rad17 cell cyc 95.4 0.085 1.8E-06 60.7 10.5 59 164-231 20-78 (519)
333 cd03237 ABC_RNaseL_inhibitor_d 95.4 0.094 2E-06 54.7 10.1 125 194-318 25-180 (246)
334 TIGR00554 panK_bact pantothena 95.4 0.063 1.4E-06 56.8 8.8 80 192-273 60-141 (290)
335 cd03244 ABCC_MRP_domain2 Domai 95.4 0.13 2.7E-06 52.9 11.0 53 266-318 150-202 (221)
336 KOG0735 AAA+-type ATPase [Post 95.4 0.065 1.4E-06 61.2 9.1 74 192-283 429-504 (952)
337 PRK13541 cytochrome c biogenes 95.4 0.19 4.1E-06 50.4 12.0 54 266-319 134-188 (195)
338 PRK12723 flagellar biosynthesi 95.4 0.14 3.1E-06 56.6 11.7 106 193-300 173-282 (388)
339 PRK05022 anaerobic nitric oxid 95.4 0.072 1.6E-06 62.1 10.1 136 162-314 186-332 (509)
340 PRK12724 flagellar biosynthesi 95.3 0.048 1E-06 60.1 7.9 25 193-217 222-246 (432)
341 PLN00020 ribulose bisphosphate 95.3 0.033 7.1E-07 59.7 6.4 26 192-217 146-171 (413)
342 cd03213 ABCG_EPDR ABCG transpo 95.3 0.14 3E-06 51.3 10.8 119 194-315 35-172 (194)
343 PRK14974 cell division protein 95.3 0.18 4E-06 54.6 12.2 116 192-310 138-260 (336)
344 COG1126 GlnQ ABC-type polar am 95.3 0.11 2.4E-06 51.0 9.3 124 193-319 27-201 (240)
345 PRK00889 adenylylsulfate kinas 95.3 0.088 1.9E-06 51.8 9.2 25 193-217 3-27 (175)
346 PRK07667 uridine kinase; Provi 95.3 0.033 7.2E-07 55.7 6.2 37 172-216 3-39 (193)
347 TIGR02324 CP_lyasePhnL phospho 95.3 0.15 3.3E-06 52.4 11.3 53 266-318 160-213 (224)
348 cd03232 ABC_PDR_domain2 The pl 95.3 0.091 2E-06 52.6 9.3 120 194-315 33-169 (192)
349 PTZ00035 Rad51 protein; Provis 95.3 0.12 2.6E-06 56.3 10.9 59 192-251 116-178 (337)
350 PRK13538 cytochrome c biogenes 95.3 0.16 3.4E-06 51.5 11.1 55 266-320 140-195 (204)
351 TIGR03740 galliderm_ABC gallid 95.3 0.13 2.8E-06 52.9 10.7 53 266-318 135-188 (223)
352 cd03263 ABC_subfamily_A The AB 95.3 0.082 1.8E-06 54.3 9.2 53 266-318 144-196 (220)
353 COG0563 Adk Adenylate kinase a 95.3 0.061 1.3E-06 52.6 7.7 22 196-217 2-23 (178)
354 cd03225 ABC_cobalt_CbiO_domain 95.3 0.12 2.7E-06 52.5 10.4 53 266-318 145-198 (211)
355 PRK10867 signal recognition pa 95.3 0.08 1.7E-06 59.3 9.5 25 192-216 98-122 (433)
356 PF07724 AAA_2: AAA domain (Cd 95.2 0.016 3.5E-07 56.4 3.5 91 194-300 3-105 (171)
357 KOG1051 Chaperone HSP104 and r 95.2 0.15 3.2E-06 61.4 12.0 124 164-301 563-687 (898)
358 TIGR00708 cobA cob(I)alamin ad 95.2 0.21 4.6E-06 48.1 10.9 118 194-314 5-140 (173)
359 COG0464 SpoVK ATPases of the A 95.2 0.38 8.2E-06 56.2 15.4 138 192-355 274-424 (494)
360 PF00006 ATP-synt_ab: ATP synt 95.2 0.067 1.4E-06 54.0 7.8 84 193-282 14-114 (215)
361 cd03217 ABC_FeS_Assembly ABC-t 95.1 0.1 2.2E-06 52.6 9.2 120 194-318 26-168 (200)
362 COG0714 MoxR-like ATPases [Gen 95.1 0.16 3.4E-06 55.7 11.3 111 164-300 25-138 (329)
363 cd03240 ABC_Rad50 The catalyti 95.1 0.09 1.9E-06 53.1 8.6 55 265-319 131-188 (204)
364 cd03264 ABC_drug_resistance_li 95.1 0.11 2.4E-06 52.9 9.4 52 266-317 141-192 (211)
365 COG0396 sufC Cysteine desulfur 95.1 0.18 3.9E-06 50.0 10.1 60 263-322 152-212 (251)
366 TIGR00959 ffh signal recogniti 95.1 0.088 1.9E-06 59.0 9.2 26 192-217 97-122 (428)
367 COG4181 Predicted ABC-type tra 95.1 0.18 3.9E-06 47.5 9.5 87 236-322 121-215 (228)
368 cd03269 ABC_putative_ATPase Th 95.1 0.16 3.4E-06 51.8 10.4 52 266-317 139-191 (210)
369 KOG2982 Uncharacterized conser 95.1 0.0077 1.7E-07 61.2 0.7 89 569-663 68-157 (418)
370 TIGR00960 3a0501s02 Type II (G 95.0 0.21 4.5E-06 51.1 11.2 54 265-318 148-202 (216)
371 TIGR01189 ccmA heme ABC export 95.0 0.25 5.5E-06 49.7 11.6 24 194-217 26-49 (198)
372 PRK11248 tauB taurine transpor 95.0 0.14 3E-06 53.8 10.1 53 266-318 139-193 (255)
373 cd03231 ABC_CcmA_heme_exporter 95.0 0.18 3.8E-06 50.9 10.5 51 265-315 135-186 (201)
374 PRK10247 putative ABC transpor 95.0 0.16 3.5E-06 52.3 10.4 53 266-318 148-202 (225)
375 PTZ00088 adenylate kinase 1; P 95.0 0.03 6.5E-07 57.3 4.8 21 196-216 8-28 (229)
376 cd03259 ABC_Carb_Solutes_like 95.0 0.15 3.3E-06 51.9 10.0 51 266-316 141-193 (213)
377 KOG0730 AAA+-type ATPase [Post 94.9 0.42 9.1E-06 54.7 13.9 62 161-224 432-496 (693)
378 cd03253 ABCC_ATM1_transporter 94.9 0.2 4.4E-06 52.0 11.1 55 265-319 147-201 (236)
379 cd01124 KaiC KaiC is a circadi 94.9 0.099 2.1E-06 52.0 8.4 45 196-244 1-45 (187)
380 PRK06547 hypothetical protein; 94.9 0.03 6.5E-07 54.6 4.4 26 192-217 13-38 (172)
381 TIGR03771 anch_rpt_ABC anchore 94.9 0.21 4.6E-06 51.3 11.0 52 265-316 123-175 (223)
382 cd03226 ABC_cobalt_CbiO_domain 94.9 0.22 4.7E-06 50.4 10.9 52 266-317 137-189 (205)
383 PRK06217 hypothetical protein; 94.9 0.081 1.8E-06 52.5 7.6 22 196-217 3-24 (183)
384 PRK04328 hypothetical protein; 94.9 0.12 2.5E-06 54.1 9.1 42 192-235 21-62 (249)
385 TIGR00064 ftsY signal recognit 94.9 0.13 2.8E-06 54.3 9.4 88 192-282 70-163 (272)
386 PRK11247 ssuB aliphatic sulfon 94.9 0.24 5.3E-06 52.0 11.5 123 194-316 38-196 (257)
387 cd01122 GP4d_helicase GP4d_hel 94.9 0.31 6.7E-06 51.8 12.5 54 193-249 29-82 (271)
388 COG0542 clpA ATP-binding subun 94.9 0.028 6E-07 66.4 4.7 160 164-353 171-345 (786)
389 PF00560 LRR_1: Leucine Rich R 94.9 0.011 2.5E-07 35.3 0.8 19 630-649 2-20 (22)
390 TIGR03864 PQQ_ABC_ATP ABC tran 94.9 0.13 2.8E-06 53.5 9.3 53 266-318 143-197 (236)
391 PRK05703 flhF flagellar biosyn 94.8 0.19 4.2E-06 56.7 11.1 104 194-299 221-326 (424)
392 cd03265 ABC_DrrA DrrA is the A 94.8 0.12 2.5E-06 53.1 8.8 24 194-217 26-49 (220)
393 COG4618 ArpD ABC-type protease 94.8 0.12 2.6E-06 57.2 8.9 22 195-216 363-384 (580)
394 cd02027 APSK Adenosine 5'-phos 94.8 0.2 4.2E-06 47.7 9.6 22 196-217 1-22 (149)
395 cd03268 ABC_BcrA_bacitracin_re 94.8 0.16 3.5E-06 51.5 9.7 53 266-318 137-190 (208)
396 PRK06002 fliI flagellum-specif 94.8 0.12 2.6E-06 57.8 9.1 87 193-282 164-263 (450)
397 cd03245 ABCC_bacteriocin_expor 94.8 0.26 5.7E-06 50.5 11.3 53 266-318 151-203 (220)
398 cd03236 ABC_RNaseL_inhibitor_d 94.8 0.2 4.3E-06 52.5 10.5 25 193-217 25-49 (255)
399 PRK07132 DNA polymerase III su 94.8 0.95 2.1E-05 48.4 15.6 154 194-387 18-185 (299)
400 cd03282 ABC_MSH4_euk MutS4 hom 94.8 0.043 9.3E-07 55.2 5.3 121 194-321 29-158 (204)
401 KOG0744 AAA+-type ATPase [Post 94.8 0.078 1.7E-06 54.9 7.0 79 194-282 177-259 (423)
402 KOG0729 26S proteasome regulat 94.8 0.15 3.2E-06 51.2 8.6 99 163-282 177-279 (435)
403 KOG0731 AAA+-type ATPase conta 94.8 0.81 1.8E-05 54.1 16.0 191 163-384 311-521 (774)
404 cd03266 ABC_NatA_sodium_export 94.8 0.12 2.6E-06 53.0 8.6 24 194-217 31-54 (218)
405 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.7 0.18 4E-06 51.8 10.0 24 194-217 48-71 (224)
406 TIGR03608 L_ocin_972_ABC putat 94.7 0.2 4.3E-06 50.8 10.1 53 265-317 144-197 (206)
407 cd03298 ABC_ThiQ_thiamine_tran 94.7 0.13 2.7E-06 52.5 8.7 52 266-317 139-192 (211)
408 PF10236 DAP3: Mitochondrial r 94.7 0.47 1E-05 51.2 13.4 48 335-383 258-305 (309)
409 KOG2123 Uncharacterized conser 94.7 0.0036 7.8E-08 63.0 -2.6 99 571-682 18-123 (388)
410 TIGR03522 GldA_ABC_ATP gliding 94.7 0.21 4.5E-06 54.0 10.7 52 266-317 144-195 (301)
411 TIGR03575 selen_PSTK_euk L-ser 94.7 0.25 5.4E-06 53.5 11.1 21 197-217 2-22 (340)
412 TIGR01277 thiQ thiamine ABC tr 94.7 0.24 5.2E-06 50.5 10.6 51 266-316 139-191 (213)
413 cd03293 ABC_NrtD_SsuB_transpor 94.7 0.29 6.3E-06 50.2 11.3 50 266-315 142-193 (220)
414 COG1703 ArgK Putative periplas 94.7 0.032 6.8E-07 57.5 3.9 68 173-248 38-105 (323)
415 PF00154 RecA: recA bacterial 94.7 0.11 2.3E-06 55.6 8.1 84 192-282 51-140 (322)
416 COG1120 FepC ABC-type cobalami 94.7 0.2 4.4E-06 51.5 9.8 24 193-216 27-50 (258)
417 PRK13647 cbiO cobalt transport 94.7 0.19 4.1E-06 53.5 10.1 53 265-317 148-201 (274)
418 PF13238 AAA_18: AAA domain; P 94.6 0.021 4.6E-07 52.8 2.5 21 197-217 1-21 (129)
419 TIGR00390 hslU ATP-dependent p 94.6 0.092 2E-06 57.7 7.6 85 163-249 12-104 (441)
420 PRK13648 cbiO cobalt transport 94.6 0.25 5.3E-06 52.5 10.9 53 266-318 153-207 (269)
421 PF12775 AAA_7: P-loop contain 94.6 0.024 5.2E-07 59.8 3.1 76 195-283 34-110 (272)
422 cd03252 ABCC_Hemolysin The ABC 94.6 0.45 9.7E-06 49.4 12.7 53 266-318 149-201 (237)
423 cd03258 ABC_MetN_methionine_tr 94.6 0.2 4.4E-06 51.8 10.1 52 266-317 151-204 (233)
424 PRK10733 hflB ATP-dependent me 94.6 0.35 7.6E-06 58.0 13.2 136 195-355 186-336 (644)
425 cd02028 UMPK_like Uridine mono 94.6 0.049 1.1E-06 53.7 5.1 21 196-216 1-21 (179)
426 cd02019 NK Nucleoside/nucleoti 94.6 0.024 5.1E-07 45.8 2.3 22 196-217 1-22 (69)
427 TIGR03574 selen_PSTK L-seryl-t 94.6 0.14 3.1E-06 53.6 8.8 21 197-217 2-22 (249)
428 cd03254 ABCC_Glucan_exporter_l 94.6 0.32 7E-06 50.2 11.4 53 266-318 150-202 (229)
429 TIGR03881 KaiC_arch_4 KaiC dom 94.6 0.21 4.6E-06 51.5 10.1 41 192-234 18-58 (229)
430 PRK15056 manganese/iron transp 94.6 0.19 4.1E-06 53.5 9.8 51 266-316 153-204 (272)
431 TIGR03411 urea_trans_UrtD urea 94.5 0.25 5.3E-06 51.6 10.5 53 265-317 153-205 (242)
432 TIGR00150 HI0065_YjeE ATPase, 94.5 0.054 1.2E-06 49.8 4.7 40 170-217 6-45 (133)
433 cd03292 ABC_FtsE_transporter F 94.5 0.25 5.3E-06 50.5 10.3 52 266-317 147-199 (214)
434 PRK11124 artP arginine transpo 94.5 0.4 8.6E-06 50.0 12.0 52 266-317 152-204 (242)
435 PRK11629 lolD lipoprotein tran 94.5 0.3 6.6E-06 50.6 11.0 54 266-319 156-211 (233)
436 TIGR00235 udk uridine kinase. 94.5 0.029 6.4E-07 56.9 3.3 25 192-216 4-28 (207)
437 PF07726 AAA_3: ATPase family 94.5 0.022 4.8E-07 51.3 2.1 28 197-226 2-29 (131)
438 PRK05480 uridine/cytidine kina 94.5 0.028 6.1E-07 57.2 3.2 25 192-216 4-28 (209)
439 cd01121 Sms Sms (bacterial rad 94.5 0.17 3.8E-06 55.8 9.5 83 193-283 81-168 (372)
440 cd03301 ABC_MalK_N The N-termi 94.5 0.28 6.1E-06 50.0 10.6 24 194-217 26-49 (213)
441 TIGR02858 spore_III_AA stage I 94.4 0.17 3.8E-06 53.0 9.0 113 192-317 109-232 (270)
442 PRK14723 flhF flagellar biosyn 94.4 0.71 1.5E-05 55.2 14.8 87 194-282 185-272 (767)
443 cd03267 ABC_NatA_like Similar 94.4 0.26 5.5E-06 51.2 10.2 53 266-318 164-218 (236)
444 PRK12678 transcription termina 94.4 0.048 1E-06 61.7 4.9 86 192-282 414-512 (672)
445 PRK13650 cbiO cobalt transport 94.4 0.17 3.7E-06 54.0 9.1 54 265-318 150-205 (279)
446 PRK15064 ABC transporter ATP-b 94.4 0.31 6.6E-06 57.5 12.1 52 265-318 165-216 (530)
447 PRK10418 nikD nickel transport 94.4 0.38 8.3E-06 50.6 11.6 24 194-217 29-52 (254)
448 PRK13948 shikimate kinase; Pro 94.4 0.23 5E-06 48.8 9.2 25 192-216 8-32 (182)
449 TIGR03878 thermo_KaiC_2 KaiC d 94.4 0.19 4.1E-06 52.9 9.1 41 192-234 34-74 (259)
450 PRK13545 tagH teichoic acids e 94.4 0.4 8.6E-06 54.8 12.1 121 194-317 50-206 (549)
451 cd03283 ABC_MutS-like MutS-lik 94.4 0.16 3.4E-06 51.0 8.2 22 195-216 26-47 (199)
452 cd01125 repA Hexameric Replica 94.4 0.22 4.9E-06 51.7 9.6 120 196-315 3-160 (239)
453 smart00534 MUTSac ATPase domai 94.4 0.022 4.7E-07 56.6 1.9 119 196-320 1-128 (185)
454 PRK14250 phosphate ABC transpo 94.3 0.27 5.9E-06 51.2 10.2 51 266-316 142-194 (241)
455 cd03262 ABC_HisP_GlnQ_permease 94.3 0.25 5.4E-06 50.4 9.8 51 266-316 146-197 (213)
456 PRK08972 fliI flagellum-specif 94.3 0.16 3.4E-06 56.6 8.6 86 193-282 161-261 (444)
457 cd03224 ABC_TM1139_LivF_branch 94.3 0.23 5.1E-06 51.0 9.7 51 266-316 143-194 (222)
458 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.3 0.47 1E-05 49.3 12.0 53 266-318 150-202 (238)
459 PRK10908 cell division protein 94.3 0.39 8.4E-06 49.3 11.3 53 266-318 148-201 (222)
460 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.3 0.26 5.7E-06 50.4 10.0 53 266-318 151-205 (218)
461 PF08298 AAA_PrkA: PrkA AAA do 94.3 0.047 1E-06 58.3 4.4 50 163-216 61-110 (358)
462 PF06745 KaiC: KaiC; InterPro 94.3 0.085 1.9E-06 54.4 6.4 87 192-282 17-124 (226)
463 PRK10771 thiQ thiamine transpo 94.3 0.13 2.8E-06 53.3 7.7 53 266-318 140-194 (232)
464 PRK14269 phosphate ABC transpo 94.3 0.36 7.8E-06 50.5 11.1 53 264-316 151-203 (246)
465 KOG2123 Uncharacterized conser 94.3 0.0022 4.7E-08 64.4 -5.2 58 788-847 40-99 (388)
466 PRK00279 adk adenylate kinase; 94.3 0.27 5.9E-06 50.1 9.9 21 196-216 2-22 (215)
467 cd03294 ABC_Pro_Gly_Bertaine T 94.2 0.39 8.5E-06 50.9 11.4 51 266-316 171-223 (269)
468 PRK05986 cob(I)alamin adenolsy 94.2 0.37 8.1E-06 47.2 10.1 120 193-315 21-159 (191)
469 cd03218 ABC_YhbG The ABC trans 94.2 0.18 3.9E-06 52.2 8.6 51 265-315 143-194 (232)
470 PRK14721 flhF flagellar biosyn 94.2 0.22 4.7E-06 55.6 9.6 88 193-282 190-278 (420)
471 cd03233 ABC_PDR_domain1 The pl 94.2 0.4 8.6E-06 48.4 10.9 24 194-217 33-56 (202)
472 TIGR03873 F420-0_ABC_ATP propo 94.2 0.34 7.4E-06 51.0 10.8 52 266-317 148-200 (256)
473 TIGR01188 drrA daunorubicin re 94.2 0.093 2E-06 56.8 6.6 54 265-318 134-188 (302)
474 PRK05201 hslU ATP-dependent pr 94.2 0.11 2.5E-06 57.0 7.1 85 163-249 15-107 (443)
475 cd03251 ABCC_MsbA MsbA is an e 94.2 0.49 1.1E-05 49.0 11.7 54 266-319 149-202 (234)
476 cd03278 ABC_SMC_barmotin Barmo 94.1 0.31 6.8E-06 48.8 9.8 47 272-318 134-180 (197)
477 PRK14259 phosphate ABC transpo 94.1 0.39 8.4E-06 51.0 11.1 23 194-216 39-61 (269)
478 cd02021 GntK Gluconate kinase 94.1 0.26 5.7E-06 46.9 8.9 22 196-217 1-22 (150)
479 COG4133 CcmA ABC-type transpor 94.1 0.77 1.7E-05 44.2 11.5 54 263-316 138-192 (209)
480 PRK10463 hydrogenase nickel in 94.1 0.2 4.2E-06 52.7 8.4 86 192-283 102-194 (290)
481 KOG2739 Leucine-rich acidic nu 94.1 0.026 5.6E-07 56.9 1.9 76 625-703 40-117 (260)
482 TIGR03498 FliI_clade3 flagella 94.1 0.17 3.6E-06 56.5 8.4 87 193-282 139-239 (418)
483 PRK13643 cbiO cobalt transport 94.1 0.34 7.4E-06 52.0 10.7 53 265-317 154-207 (288)
484 cd03243 ABC_MutS_homologs The 94.1 0.044 9.5E-07 55.4 3.5 22 195-216 30-51 (202)
485 PRK03839 putative kinase; Prov 94.1 0.035 7.6E-07 54.9 2.8 22 196-217 2-23 (180)
486 PRK14247 phosphate ABC transpo 94.1 0.52 1.1E-05 49.4 11.8 52 266-317 157-208 (250)
487 cd03250 ABCC_MRP_domain1 Domai 94.1 0.58 1.3E-05 47.3 11.8 56 263-318 135-192 (204)
488 COG2401 ABC-type ATPase fused 94.1 0.06 1.3E-06 57.6 4.5 163 161-323 369-577 (593)
489 TIGR01360 aden_kin_iso1 adenyl 94.1 0.043 9.3E-07 54.7 3.4 24 193-216 2-25 (188)
490 PRK03846 adenylylsulfate kinas 94.0 0.29 6.2E-06 49.2 9.4 25 192-216 22-46 (198)
491 PRK09580 sufC cysteine desulfu 94.0 0.33 7.2E-06 50.8 10.3 54 266-319 156-210 (248)
492 COG0488 Uup ATPase components 94.0 0.36 7.9E-06 55.7 11.2 225 52-310 239-493 (530)
493 PRK09280 F0F1 ATP synthase sub 94.0 0.21 4.5E-06 56.1 8.9 89 193-282 143-247 (463)
494 PRK12597 F0F1 ATP synthase sub 94.0 0.13 2.8E-06 57.9 7.3 89 193-282 142-246 (461)
495 TIGR00968 3a0106s01 sulfate AB 94.0 0.096 2.1E-06 54.4 6.0 52 266-317 141-194 (237)
496 cd03295 ABC_OpuCA_Osmoprotecti 94.0 0.26 5.6E-06 51.4 9.3 51 266-316 146-198 (242)
497 PRK06995 flhF flagellar biosyn 94.0 0.34 7.4E-06 55.0 10.6 87 194-282 256-343 (484)
498 TIGR02314 ABC_MetN D-methionin 94.0 0.18 3.9E-06 55.2 8.2 55 265-319 150-206 (343)
499 PRK07276 DNA polymerase III su 94.0 2.3 4.9E-05 45.1 16.1 71 271-352 102-173 (290)
500 PRK10820 DNA-binding transcrip 94.0 0.17 3.8E-06 59.0 8.6 45 164-216 205-249 (520)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-91 Score=827.41 Aligned_cols=832 Identities=25% Similarity=0.379 Sum_probs=613.7
Q ss_pred HHHHHHHHhhchHHHH-HHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhcccCcHHHHHHHHHHHhhhHhhhhhHHHHH
Q 037574 6 TVSTVLDQLSSITQQM-NEARLVVGGVVTDVEKLRNHLKAIQEVLDDAEKRQVKEKAVEDWLRELKDTSYAIDDTLDEWN 84 (961)
Q Consensus 6 ~v~~~~~kl~~~~~~~-~e~~~~~~~v~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~l~~~~~d~ed~ld~~~ 84 (961)
.++..+.|+.++ + .+...+.+ +++.+..|++.|..++.++++|++++.....+..|.+.+++++|+++|.++.|.
T Consensus 4 ~~s~~~~~~~~~---l~~~~~~~~~-~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~ 79 (889)
T KOG4658|consen 4 CVSFGVEKLDQL---LNRESECLDG-KDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFL 79 (889)
T ss_pred EEEEehhhHHHH---HHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888 7 88888888 999999999999999999999999988889999999999999999999999999
Q ss_pred HHHHHHHhhccccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHhcccCCCccccC---CC-CCcccccCccccC
Q 037574 85 TAIQKLLLANETDHKASKVRSFTCHLPIALRFDIGCKLKNLSRRVDAIAGKKGGFEFKLMS---GP-GEKIIIMTSSEAI 160 (961)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~~l~~i~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~ 160 (961)
......+....... .....+..|. ..++++.+..+..+..++.++.+....++....- +. ......+.+.+..
T Consensus 80 v~~~~~~~~~~l~~-~~~~~~~~c~--~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~ 156 (889)
T KOG4658|consen 80 VEEIERKANDLLST-RSVERQRLCL--CGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQ 156 (889)
T ss_pred HHHHHHHHhHHhhh-hHHHHHHHhh--hhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCC
Confidence 88765533221110 0011111111 1455566666666666666666665555533211 11 1111223333333
Q ss_pred CCCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChh-hhccCceeEEEEeCCCCCHH
Q 037574 161 DPLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSD-VKANFDKRIWVSASCPRDEI 239 (961)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~s~~~~~~ 239 (961)
.... ||.+..++.+++.|... +..+++|+||||+||||||++++|+.. ++.+|+.++||+||+.++..
T Consensus 157 ~~~~-VG~e~~~~kl~~~L~~d----------~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~ 225 (889)
T KOG4658|consen 157 SESD-VGLETMLEKLWNRLMED----------DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTR 225 (889)
T ss_pred cccc-ccHHHHHHHHHHHhccC----------CCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHH
Confidence 3334 99999999999999974 338999999999999999999999987 99999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCc--ccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCccc
Q 037574 240 RVAKAILESLKGSVSSQ--VEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNG 317 (961)
Q Consensus 240 ~~~~~il~~l~~~~~~~--~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 317 (961)
.++.+|++.++...... .+.++++..|.+.|++|||+||||||| +...|+.+..++|...+||+|++|||+..|+
T Consensus 226 ~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW---~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~ 302 (889)
T KOG4658|consen 226 KIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIW---EEVDWDKIGVPFPSRENGSKVVLTTRSEEVC 302 (889)
T ss_pred hHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccc---ccccHHhcCCCCCCccCCeEEEEEeccHhhh
Confidence 99999999998754332 234789999999999999999999999 5566999999999999999999999999999
Q ss_pred cc-ccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHHHhhccCCCC
Q 037574 318 TN-MTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKILGSLLRFKTS 396 (961)
Q Consensus 318 ~~-~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~~~~l~~~~~ 396 (961)
.. +++. ..++++.|+.+|||.||++.+|..... ..+.++++|++|+++|+|+|||++++|+.|+.+.+
T Consensus 303 ~~~m~~~----------~~~~v~~L~~~eaW~LF~~~v~~~~~~-~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t 371 (889)
T KOG4658|consen 303 GRAMGVD----------YPIEVECLTPEEAWDLFQKKVGPNTLG-SHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKT 371 (889)
T ss_pred hccccCC----------ccccccccCccccHHHHHHhhcccccc-ccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCc
Confidence 98 6665 899999999999999999999876443 33559999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcccchhhhhccCCCCcchhhhHhhhcCCChHHHHHhhHhccCCCCcccChHHHHHHHHHcCcccccc-
Q 037574 397 IEEWQSVLDSEIWNLDSKICKRAGVGDEYFSPLLLSYYDLSPALKKCFLYCSIFPKNYEIEKDRLIKLWMAQGYLKLLE- 475 (961)
Q Consensus 397 ~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~W~a~g~i~~~~- 475 (961)
..+|+++.+.+.+....+. .+..+.++++|++||+.||+++|.||+|||+||+||.|+++.|+.+|+||||+++.+
T Consensus 372 ~~eW~~~~~~l~s~~~~~~---~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~ 448 (889)
T KOG4658|consen 372 VQEWRRALNVLKSSLAADF---SGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDG 448 (889)
T ss_pred HHHHHHHHccccccccCCC---CchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCcccc
Confidence 9999999998776643321 224678999999999999999999999999999999999999999999999999844
Q ss_pred cccHHHHHHHHHHHHHhCCCCcccccCCCCCeEEEEEeCchHHHHHHHhcc-----CCccccccc-cccccccccCcCCC
Q 037574 476 SEDMEVIGEEYFANLASRSLFQDFQKSEFDGRIIRCQMHPIVHEFAHFLTK-----SDNFNAEVK-VSDQECRSKSSHEK 549 (961)
Q Consensus 476 ~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~~Hdlv~~~a~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~ 549 (961)
+.+++++|+.|+.+|++++|++..... ++.. +|+|||+|||+|.++|+ +++.++... +. ...+....+..
T Consensus 449 ~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~-~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~-~~~~~~~~~~~ 524 (889)
T KOG4658|consen 449 GETAEDVGYDYIEELVRASLLIEERDE--GRKE-TVKMHDVVREMALWIASDFGKQEENQIVSDGVGL-SEIPQVKSWNS 524 (889)
T ss_pred ccchhcchHHHHHHHHHHHHHhhcccc--ccee-EEEeeHHHHHHHHHHhccccccccceEEECCcCc-cccccccchhh
Confidence 567999999999999999999887643 4445 89999999999999999 565444332 11 10111234578
Q ss_pred ccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcCCCC
Q 037574 550 FPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRLIH 629 (961)
Q Consensus 550 ~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~ 629 (961)
+|++++.++... ..+ .-..+++|++|.+..+..... .+...+|..++.||||||++| ..+.++|.+|++|.|
T Consensus 525 ~rr~s~~~~~~~-~~~-~~~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~-----~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 525 VRRMSLMNNKIE-HIA-GSSENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGN-----SSLSKLPSSIGELVH 596 (889)
T ss_pred eeEEEEeccchh-hcc-CCCCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCC-----CccCcCChHHhhhhh
Confidence 899999998873 233 234556899999998853122 445677999999999999998 558999999999999
Q ss_pred cceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcccccCCcCCCCCCCCCcCCceEe
Q 037574 630 LRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLSYMPKGIERWSCLRTLSEFIV 709 (961)
Q Consensus 630 Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~~~p~~i~~L~~L~~L~~~~~ 709 (961)
||||+|+++. +..+|..+++|..|++|++..+..+..+|..+..|.+||+|.+.......-...++.+.+|++|..+.+
T Consensus 597 LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 597 LRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 9999999999 999999999999999999999887777776677799999999955432222223555666666666555
Q ss_pred cCCCCCCCCCChhhhhcccccC---CceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHHHHhcCC
Q 037574 710 SGGNDDKKASKLECLKSLNHLQ---GSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAVVEGLE 786 (961)
Q Consensus 710 ~~~~~~~~~~~l~~L~~L~~L~---~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~ 786 (961)
...+ ...+..+..+..|. ..+.+.. .........+ .
T Consensus 676 ~~~s----~~~~e~l~~~~~L~~~~~~l~~~~----~~~~~~~~~~---------------------------------~ 714 (889)
T KOG4658|consen 676 TISS----VLLLEDLLGMTRLRSLLQSLSIEG----CSKRTLISSL---------------------------------G 714 (889)
T ss_pred ecch----hHhHhhhhhhHHHHHHhHhhhhcc----cccceeeccc---------------------------------c
Confidence 4332 11122222222222 0111100 0111111222 3
Q ss_pred CCCCcCceEEeeecCccc--cccc---ccc-ccCceEEEEeCCCCCCcCCCCCCCCccceeeeccccCceEeCccccccC
Q 037574 787 LPSNLESMEMFYYRGESI--SLMM---IML-SNKLRSLTLDRCVNLKQLPGLGGLPSLESLTLRNMKRIEKVGNEFLLTD 860 (961)
Q Consensus 787 ~~~~L~~L~l~~~~~~~~--~~~~---~~~-l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~l~~l~~~~~~~~ 860 (961)
.+.+|+.|.+.++.+... .|.. ... |++|..+.+.+|.....+.+....|+|+.|.+..|..++.+....-...
T Consensus 715 ~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~ 794 (889)
T KOG4658|consen 715 SLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALL 794 (889)
T ss_pred cccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhh
Confidence 345556666655555432 2321 111 4566666666666666666666677777777777776665533211100
Q ss_pred CCCCCCcccccCccccee-eccccccccccccccccCcccccccccceecccccccCcCCCCCCCCCCCCeEEEccc-cc
Q 037574 861 RTSSTGTAVSAFPKLKSL-VFLKMKAWREWKYKTKRGKHYKIMPCLCSLTIGYCNELEMLPAEHFPDTLKDLKIISC-SK 938 (961)
Q Consensus 861 ~~~~~~~~~~~fp~L~~L-~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~l~~sL~~L~i~~c-~~ 938 (961)
. .......|++++.+ .+.+++.+..+.. ....+|.|+.+.+..||+++.+|. +.++.+.+| ++
T Consensus 795 ~---l~~~i~~f~~~~~l~~~~~l~~l~~i~~------~~l~~~~l~~~~ve~~p~l~~~P~------~~~~~i~~~~~~ 859 (889)
T KOG4658|consen 795 E---LKELILPFNKLEGLRMLCSLGGLPQLYW------LPLSFLKLEELIVEECPKLGKLPL------LSTLTIVGCEEK 859 (889)
T ss_pred h---cccEEecccccccceeeecCCCCceeEe------cccCccchhheehhcCcccccCcc------ccccceeccccc
Confidence 0 00012456677777 4677776666554 222677799999999999999986 456677776 44
Q ss_pred hhh
Q 037574 939 LEK 941 (961)
Q Consensus 939 l~~ 941 (961)
+..
T Consensus 860 ~~~ 862 (889)
T KOG4658|consen 860 LKE 862 (889)
T ss_pred eee
Confidence 443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1e-61 Score=609.42 Aligned_cols=671 Identities=21% Similarity=0.259 Sum_probs=438.0
Q ss_pred CCCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEe---CCC--
Q 037574 161 DPLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSA---SCP-- 235 (961)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~---s~~-- 235 (961)
+...+|||++.++++..+|.... ..+++|+||||||+||||||+.+|+ ++..+|++.+|+.. +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~--------~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~ 251 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLES--------EEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSME 251 (1153)
T ss_pred ccccccchHHHHHHHHHHHcccc--------CceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchh
Confidence 34569999999999999886433 5689999999999999999999999 67889998888742 111
Q ss_pred ---------CC-HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCc
Q 037574 236 ---------RD-EIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGS 305 (961)
Q Consensus 236 ---------~~-~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs 305 (961)
+. ...++.+++.++........ .. ...+++.++++|+|||||||| +.+.|+.+.......++||
T Consensus 252 ~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~--~~-~~~~~~~L~~krvLLVLDdv~---~~~~l~~L~~~~~~~~~Gs 325 (1153)
T PLN03210 252 IYSSANPDDYNMKLHLQRAFLSEILDKKDIKI--YH-LGAMEERLKHRKVLIFIDDLD---DQDVLDALAGQTQWFGSGS 325 (1153)
T ss_pred hcccccccccchhHHHHHHHHHHHhCCCCccc--CC-HHHHHHHHhCCeEEEEEeCCC---CHHHHHHHHhhCccCCCCc
Confidence 01 12344555555433221110 01 145677789999999999998 6688999887777678899
Q ss_pred EEEEecCCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHH
Q 037574 306 RILVTRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVK 385 (961)
Q Consensus 306 ~ilvTtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~ 385 (961)
+||||||+..++...+.. ..|+++.|++++||+||+++||+... +++.+.+++++|+++|+|+|||++
T Consensus 326 rIIiTTrd~~vl~~~~~~----------~~~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~ 393 (1153)
T PLN03210 326 RIIVITKDKHFLRAHGID----------HIYEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLN 393 (1153)
T ss_pred EEEEEeCcHHHHHhcCCC----------eEEEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHH
Confidence 999999999998766554 78999999999999999999997643 245688999999999999999999
Q ss_pred HHHhhccCCCCHHHHHHHhhhhhcccchhhhhccCCCCcchhhhHhhhcCCCh-HHHHHhhHhccCCCCcccChHHHHHH
Q 037574 386 ILGSLLRFKTSIEEWQSVLDSEIWNLDSKICKRAGVGDEYFSPLLLSYYDLSP-ALKKCFLYCSIFPKNYEIEKDRLIKL 464 (961)
Q Consensus 386 ~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~-~~k~cfl~~a~fp~~~~i~~~~Li~~ 464 (961)
++|+.|+.+ +..+|+.+++++.... ...+.++|++||+.|++ ..|.||+++|+|+.+..++ .+..
T Consensus 394 vlgs~L~~k-~~~~W~~~l~~L~~~~----------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~ 459 (1153)
T PLN03210 394 VLGSYLRGR-DKEDWMDMLPRLRNGL----------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKL 459 (1153)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHHhCc----------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHH
Confidence 999999876 7899999998865432 34689999999999987 5999999999999987553 4777
Q ss_pred HHHcCcccccccccHHHHHHHHHHHHHhCCCCcccccCCCCCeEEEEEeCchHHHHHHHhccCCcc-------ccccccc
Q 037574 465 WMAQGYLKLLESEDMEVIGEEYFANLASRSLFQDFQKSEFDGRIIRCQMHPIVHEFAHFLTKSDNF-------NAEVKVS 537 (961)
Q Consensus 465 W~a~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~~Hdlv~~~a~~~~~~~~~-------~~~~~~~ 537 (961)
|.|.+.... +..++.|+++||++.... .++|||++|++|+++++++.. .......
T Consensus 460 ~l~~~~~~~----------~~~l~~L~~ksLi~~~~~--------~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di 521 (1153)
T PLN03210 460 LLANSDLDV----------NIGLKNLVDKSLIHVRED--------IVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDI 521 (1153)
T ss_pred HHHhcCCCc----------hhChHHHHhcCCEEEcCC--------eEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHH
Confidence 888765432 224899999999987432 699999999999999876631 1000000
Q ss_pred cccccccCcCCCccEEEEEeccCC--CCCcccccCCCCccEEEeccCCC----ccc-----------------------c
Q 037574 538 DQECRSKSSHEKFPHLMITFESDQ--GAFPNSVYNQKKLRSLGVEHGGG----FMN-----------------------G 588 (961)
Q Consensus 538 ~~~~~~~~~~~~~r~l~l~~~~~~--~~~~~~~~~~~~Lr~L~l~~~~~----~~~-----------------------~ 588 (961)
...........+++.+++...... ...+..|.++++|+.|.+..+.. ... .
T Consensus 522 ~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l 601 (1153)
T PLN03210 522 CDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL 601 (1153)
T ss_pred HHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC
Confidence 000000122345555555443321 11123456666666666643310 000 0
Q ss_pred ccchhhhccCCcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCccc
Q 037574 589 IVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNL 668 (961)
Q Consensus 589 ~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~l 668 (961)
..+|..| .+.+|+.|+|.++ . +..+|.++..+++|++|+|++|..++.+|. ++.+++|++|++++|..+..+
T Consensus 602 ~~lP~~f-~~~~L~~L~L~~s-----~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~l 673 (1153)
T PLN03210 602 RCMPSNF-RPENLVKLQMQGS-----K-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVEL 673 (1153)
T ss_pred CCCCCcC-CccCCcEEECcCc-----c-ccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCcccc
Confidence 0112222 3467777777776 3 777787788888888888888766777775 778888888888888888888
Q ss_pred ccccccCCCCcEEEeC-CcccccCCcCCCCCCCCCcCCceEecCCCCCCCCCChhhhhcccccCCceeEcCCCCCChhhh
Q 037574 669 PQGMGKLINLRHVVNV-GTPLSYMPKGIERWSCLRTLSEFIVSGGNDDKKASKLECLKSLNHLQGSLNIKGLGNVDKDEI 747 (961)
Q Consensus 669 P~~i~~L~~L~~L~l~-~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~ 747 (961)
|..+.+|++|++|+++ |+.+..+|.++ ++++|+.|....+... ...+. ...+|. .|.+.+ ... ..
T Consensus 674 p~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L--~~~p~---~~~nL~----~L~L~~---n~i-~~ 739 (1153)
T PLN03210 674 PSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRL--KSFPD---ISTNIS----WLDLDE---TAI-EE 739 (1153)
T ss_pred chhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCc--ccccc---ccCCcC----eeecCC---Ccc-cc
Confidence 8888888888888884 45677777765 5666666654322110 00010 011222 222221 111 11
Q ss_pred HhhccccccccCceeEEecCCCCcCCCccchHHHHhcCCCCCCcCceEEeeecCcc-c-cccccccccCceEEEEeCCCC
Q 037574 748 FKAELSKREKLLALGISFDRDDEEGRKKEDDEAVVEGLELPSNLESMEMFYYRGES-I-SLMMIMLSNKLRSLTLDRCVN 825 (961)
Q Consensus 748 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-~-~~~~~~~l~~L~~L~L~~~~~ 825 (961)
++..+ .+++|++|.+..+.............. .....+++|+.|+++++.... + .++ ..+++|+.|+|++|..
T Consensus 740 lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~--~~~~~~~sL~~L~Ls~n~~l~~lP~si--~~L~~L~~L~Ls~C~~ 814 (1153)
T PLN03210 740 FPSNL-RLENLDELILCEMKSEKLWERVQPLTP--LMTMLSPSLTRLFLSDIPSLVELPSSI--QNLHKLEHLEIENCIN 814 (1153)
T ss_pred ccccc-cccccccccccccchhhccccccccch--hhhhccccchheeCCCCCCccccChhh--hCCCCCCEEECCCCCC
Confidence 11222 456777777765432100000000000 011124689999998875433 2 333 3788999999999988
Q ss_pred CCcCCCCCCCCccceeeeccccCceEeCccccccCCCCCCCcccccCcccceeeccccccccccccccccCccccccccc
Q 037574 826 LKQLPGLGGLPSLESLTLRNMKRIEKVGNEFLLTDRTSSTGTAVSAFPKLKSLVFLKMKAWREWKYKTKRGKHYKIMPCL 905 (961)
Q Consensus 826 ~~~l~~l~~lp~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L 905 (961)
+..+|....+++|+.|+|++|..+..+|.. .++|+.|.+.+. +++.++. ....+++|
T Consensus 815 L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~----------------~~nL~~L~Ls~n-~i~~iP~------si~~l~~L 871 (1153)
T PLN03210 815 LETLPTGINLESLESLDLSGCSRLRTFPDI----------------STNISDLNLSRT-GIEEVPW------WIEKFSNL 871 (1153)
T ss_pred cCeeCCCCCccccCEEECCCCCcccccccc----------------ccccCEeECCCC-CCccChH------HHhcCCCC
Confidence 888887668899999999998877665431 234444544442 2222221 22345555
Q ss_pred ceecccccccCcCCCCCCC-CCCCCeEEEccccchhh
Q 037574 906 CSLTIGYCNELEMLPAEHF-PDTLKDLKIISCSKLEK 941 (961)
Q Consensus 906 ~~L~i~~C~~L~~lp~~~l-~~sL~~L~i~~c~~l~~ 941 (961)
+.|++.+|++|..+|.... ..+|+.|++.+|+++..
T Consensus 872 ~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 872 SFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred CEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence 5555555555555544211 12255555555555543
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.4e-44 Score=387.70 Aligned_cols=282 Identities=37% Similarity=0.569 Sum_probs=228.3
Q ss_pred chHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHH
Q 037574 168 RNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILE 247 (961)
Q Consensus 168 r~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~ 247 (961)
|+.++++|.++|.... .+.++|+|+||||+||||||++++++..++.+|+.++||.++...+...++..|+.
T Consensus 1 re~~~~~l~~~L~~~~--------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~ 72 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS--------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILR 72 (287)
T ss_dssp -HHHHHHHHHHHHTTT--------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHH
T ss_pred CHHHHHHHHHHhhCCC--------CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccc
Confidence 7899999999999754 56899999999999999999999997778999999999999999999999999999
Q ss_pred HhcCCCC---CcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCcccccccc-c
Q 037574 248 SLKGSVS---SQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNGTNMTE-I 323 (961)
Q Consensus 248 ~l~~~~~---~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~-~ 323 (961)
+++.... ...+.++....+.+.++++++|||||||| +...|+.+...++....|++||||||+..++..+.. .
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~---~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~ 149 (287)
T PF00931_consen 73 QLGEPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVW---DEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTD 149 (287)
T ss_dssp HHTCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE----SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCE
T ss_pred cccccccccccccccccccccchhhhccccceeeeeeec---cccccccccccccccccccccccccccccccccccccc
Confidence 9988743 44677889999999999999999999998 667899988888887889999999999998887754 3
Q ss_pred ccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHHHhhccCCCCHHHHHHH
Q 037574 324 GLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKILGSLLRFKTSIEEWQSV 403 (961)
Q Consensus 324 ~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~~~~l~~~~~~~~w~~~ 403 (961)
..+++++|+.+||++||++.++... ....+.+.+++++|+++|+|+||||+++|++|+.+.+..+|+.+
T Consensus 150 ----------~~~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~ 218 (287)
T PF00931_consen 150 ----------KVIELEPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEA 218 (287)
T ss_dssp ----------EEEECSS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHH
T ss_pred ----------ccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccc
Confidence 7899999999999999999987655 22335566789999999999999999999999766677899999
Q ss_pred hhhhhcccchhhhhccCCCCcchhhhHhhhcCCChHHHHHhhHhccCCCCcccChHHHHHHHHHcCcccccc
Q 037574 404 LDSEIWNLDSKICKRAGVGDEYFSPLLLSYYDLSPALKKCFLYCSIFPKNYEIEKDRLIKLWMAQGYLKLLE 475 (961)
Q Consensus 404 l~~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~W~a~g~i~~~~ 475 (961)
+++..+.... ..+....+..++.+||+.||+++|.||+|||+||+++.|+++.|+++|+++|||+..+
T Consensus 219 ~~~l~~~~~~----~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~~ 286 (287)
T PF00931_consen 219 LEELENSLRE----SRDYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSKH 286 (287)
T ss_dssp HHHHHHCHTC----SSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC---
T ss_pred cccccccccc----cccccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcccC
Confidence 8876655422 0113567999999999999999999999999999999999999999999999997654
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=6.5e-21 Score=241.39 Aligned_cols=356 Identities=20% Similarity=0.236 Sum_probs=218.0
Q ss_pred CCCccEEEEEeccCCCCCccccc-CCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhc
Q 037574 547 HEKFPHLMITFESDQGAFPNSVY-NQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIK 625 (961)
Q Consensus 547 ~~~~r~l~l~~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~ 625 (961)
.+.++.|++++|.+...+|..+. .+++||.|++++|. +.+. .| ...+++|++|+|++| .....+|..++
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~--l~~~-~p--~~~l~~L~~L~Ls~n-----~~~~~~p~~~~ 161 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN--FTGS-IP--RGSIPNLETLDLSNN-----MLSGEIPNDIG 161 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCc--cccc-cC--ccccCCCCEEECcCC-----cccccCChHHh
Confidence 34566666666665444554433 66677777766654 2211 11 235667777777776 32346777888
Q ss_pred CCCCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcccc-cCCcCCCCCCCCCcC
Q 037574 626 RLIHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLS-YMPKGIERWSCLRTL 704 (961)
Q Consensus 626 ~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~-~~p~~i~~L~~L~~L 704 (961)
.+++|++|+|++|.....+|..++++++|++|++++|.....+|..++++++|++|+++.|.+. .+|..++++++|++|
T Consensus 162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 241 (968)
T PLN00113 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL 241 (968)
T ss_pred cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEE
Confidence 8888888888888744577888888888888888888755667888888888888888777765 567777878887777
Q ss_pred CceEecCCCCCCCCCChhhhhcccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHHHHhc
Q 037574 705 SEFIVSGGNDDKKASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAVVEG 784 (961)
Q Consensus 705 ~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 784 (961)
......... ..+..+..+.+|+ .|.+.. +......+..+..+++|+.|++++|... ......
T Consensus 242 ~L~~n~l~~--~~p~~l~~l~~L~----~L~L~~---n~l~~~~p~~l~~l~~L~~L~Ls~n~l~---------~~~p~~ 303 (968)
T PLN00113 242 DLVYNNLTG--PIPSSLGNLKNLQ----YLFLYQ---NKLSGPIPPSIFSLQKLISLDLSDNSLS---------GEIPEL 303 (968)
T ss_pred ECcCceecc--ccChhHhCCCCCC----EEECcC---CeeeccCchhHhhccCcCEEECcCCeec---------cCCChh
Confidence 643221110 1122333343333 333322 2122233445667788888888877542 122334
Q ss_pred CCCCCCcCceEEeeecCccc--cccccccccCceEEEEeCCCCCCcCC-CCCCCCccceeeeccccCceEeCcccccc--
Q 037574 785 LELPSNLESMEMFYYRGESI--SLMMIMLSNKLRSLTLDRCVNLKQLP-GLGGLPSLESLTLRNMKRIEKVGNEFLLT-- 859 (961)
Q Consensus 785 l~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~l~~l~~~~~~~-- 859 (961)
+..+++|+.|++.++..... .++. .+++|+.|+|++|.....+| .++.+++|+.|+++++.--..++..+...
T Consensus 304 ~~~l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~ 381 (968)
T PLN00113 304 VIQLQNLEILHLFSNNFTGKIPVALT--SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN 381 (968)
T ss_pred HcCCCCCcEEECCCCccCCcCChhHh--cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCC
Confidence 45567888998888775543 2333 68889999998886555566 47788899999998754222333322211
Q ss_pred ------CCCCCCCc---ccccCcccceeeccccccccccccccccCcccccccccceecccccccCcCCCC--CCCCCCC
Q 037574 860 ------DRTSSTGT---AVSAFPKLKSLVFLKMKAWREWKYKTKRGKHYKIMPCLCSLTIGYCNELEMLPA--EHFPDTL 928 (961)
Q Consensus 860 ------~~~~~~~~---~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~--~~l~~sL 928 (961)
..+.+... ....+++|+.|.+.++.--... +.....+++|+.|++++|.--..+|. ..++. |
T Consensus 382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~------p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L 454 (968)
T PLN00113 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL------PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPS-L 454 (968)
T ss_pred CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC------ChhHhcCCCCCEEECcCCcccCccChhhccCCC-C
Confidence 01111111 1234667777777766321111 23445788899999988653334443 22344 9
Q ss_pred CeEEEccccch
Q 037574 929 KDLKIISCSKL 939 (961)
Q Consensus 929 ~~L~i~~c~~l 939 (961)
+.|++.+|.-.
T Consensus 455 ~~L~L~~n~~~ 465 (968)
T PLN00113 455 QMLSLARNKFF 465 (968)
T ss_pred cEEECcCceee
Confidence 99999988643
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=5.1e-21 Score=242.28 Aligned_cols=353 Identities=18% Similarity=0.211 Sum_probs=159.7
Q ss_pred CCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcCC
Q 037574 548 EKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRL 627 (961)
Q Consensus 548 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l 627 (961)
.+++.|+++.|.+....|..+..+++|++|++.+|. +. ...|..+.++++|++|+|++| .....+|..++++
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~--l~-~~~p~~~~~l~~L~~L~L~~n-----~l~~~~p~~l~~l 211 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV--LV-GKIPNSLTNLTSLEFLTLASN-----QLVGQIPRELGQM 211 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCc--cc-ccCChhhhhCcCCCeeeccCC-----CCcCcCChHHcCc
Confidence 345555555555544445555555556665555553 11 123344555555555555555 2233455555555
Q ss_pred CCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcccc-cCCcCCCCCCCCCcCCc
Q 037574 628 IHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLS-YMPKGIERWSCLRTLSE 706 (961)
Q Consensus 628 ~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~-~~p~~i~~L~~L~~L~~ 706 (961)
.+|++|+|++|.....+|..++++++|++|++++|.....+|..++++++|++|+++.|.+. .+|..+..+++|+.|..
T Consensus 212 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 291 (968)
T PLN00113 212 KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDL 291 (968)
T ss_pred CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEEC
Confidence 55555555555533345555555555555555555533345555555555555555555443 34444544444444432
Q ss_pred eEecCCCCC-CCCCChhhhhcccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHHHHhcC
Q 037574 707 FIVSGGNDD-KKASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAVVEGL 785 (961)
Q Consensus 707 ~~~~~~~~~-~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l 785 (961)
. .+... ..+..+..+.+|+ .+.+. .+......+..+..+++|+.|+++.|... ......+
T Consensus 292 s---~n~l~~~~p~~~~~l~~L~----~L~l~---~n~~~~~~~~~~~~l~~L~~L~L~~n~l~---------~~~p~~l 352 (968)
T PLN00113 292 S---DNSLSGEIPELVIQLQNLE----ILHLF---SNNFTGKIPVALTSLPRLQVLQLWSNKFS---------GEIPKNL 352 (968)
T ss_pred c---CCeeccCCChhHcCCCCCc----EEECC---CCccCCcCChhHhcCCCCCEEECcCCCCc---------CcCChHH
Confidence 1 11111 0111122222222 22221 11111122233445555666666555432 1112223
Q ss_pred CCCCCcCceEEeeecCccc--cccccccccCceEEEEeCCCCCCcCC-CCCCCCccceeeeccccCceEeCccccc----
Q 037574 786 ELPSNLESMEMFYYRGESI--SLMMIMLSNKLRSLTLDRCVNLKQLP-GLGGLPSLESLTLRNMKRIEKVGNEFLL---- 858 (961)
Q Consensus 786 ~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~l~~l~~~~~~---- 858 (961)
..+++|+.|+++++..... .++. .+++|+.|++.+|.....+| .++.+++|+.|++++|.--..++..+..
T Consensus 353 ~~~~~L~~L~Ls~n~l~~~~p~~~~--~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L 430 (968)
T PLN00113 353 GKHNNLTVLDLSTNNLTGEIPEGLC--SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV 430 (968)
T ss_pred hCCCCCcEEECCCCeeEeeCChhHh--CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCC
Confidence 3345555555555443221 2222 33445555555543333333 2444555555555553311122211100
Q ss_pred ----cCCCCCCCcc---cccCcccceeeccccccccccccccccCcccccccccceecccccccCcCCCCC--CCCCCCC
Q 037574 859 ----TDRTSSTGTA---VSAFPKLKSLVFLKMKAWREWKYKTKRGKHYKIMPCLCSLTIGYCNELEMLPAE--HFPDTLK 929 (961)
Q Consensus 859 ----~~~~~~~~~~---~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~--~l~~sL~ 929 (961)
.+.+.+.+.. ...+++|+.|.+.++.-..... .....++|+.|++++|.-...+|.. .++ +|+
T Consensus 431 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p-------~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~-~L~ 502 (968)
T PLN00113 431 YFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP-------DSFGSKRLENLDLSRNQFSGAVPRKLGSLS-ELM 502 (968)
T ss_pred CEEECcCCcccCccChhhccCCCCcEEECcCceeeeecC-------cccccccceEEECcCCccCCccChhhhhhh-ccC
Confidence 0001111000 1346677777776664322221 1123567888888876544445532 223 488
Q ss_pred eEEEcccc
Q 037574 930 DLKIISCS 937 (961)
Q Consensus 930 ~L~i~~c~ 937 (961)
.|++++|.
T Consensus 503 ~L~Ls~N~ 510 (968)
T PLN00113 503 QLKLSENK 510 (968)
T ss_pred EEECcCCc
Confidence 88888774
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=1.8e-22 Score=215.73 Aligned_cols=340 Identities=22% Similarity=0.252 Sum_probs=212.3
Q ss_pred CccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcCCC
Q 037574 549 KFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRLI 628 (961)
Q Consensus 549 ~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~ 628 (961)
.++.|-+....+ ..+|+.+..+.+|..|.+.+|. .. . +..-+..++.||.+++..|. -.-..+|..|-+|.
T Consensus 33 ~~~WLkLnrt~L-~~vPeEL~~lqkLEHLs~~HN~--L~-~-vhGELs~Lp~LRsv~~R~N~----LKnsGiP~diF~l~ 103 (1255)
T KOG0444|consen 33 QMTWLKLNRTKL-EQVPEELSRLQKLEHLSMAHNQ--LI-S-VHGELSDLPRLRSVIVRDNN----LKNSGIPTDIFRLK 103 (1255)
T ss_pred heeEEEechhhh-hhChHHHHHHhhhhhhhhhhhh--hH-h-hhhhhccchhhHHHhhhccc----cccCCCCchhcccc
Confidence 445555555554 4566667777777777666665 11 1 22335667777777777763 11345677777777
Q ss_pred CcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccccc-cccCCCCcEEEeCCcccccCCcCCCCCCCCCcCCce
Q 037574 629 HLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQG-MGKLINLRHVVNVGTPLSYMPKGIERWSCLRTLSEF 707 (961)
Q Consensus 629 ~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~l~~~p~~i~~L~~L~~L~~~ 707 (961)
.|..||||.|. +++.|..+..-+|+-+|+|++|+ |..+|.. +.+|+.|-.|+++.|++..+|+.+.+|.+||+|...
T Consensus 104 dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls 181 (1255)
T KOG0444|consen 104 DLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLS 181 (1255)
T ss_pred cceeeecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcC
Confidence 77888887777 77777777777777788887766 7777755 456777777777777777777777777777777642
Q ss_pred EecCCCCCCCCCChhhhhcccccCCceeEcCCCCC-ChhhhHhhccccccccCceeEEecCCCCcCCCccchHHHHhcCC
Q 037574 708 IVSGGNDDKKASKLECLKSLNHLQGSLNIKGLGNV-DKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAVVEGLE 786 (961)
Q Consensus 708 ~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~ 786 (961)
++ +....+|+.|..+. .|.+..+++. ....-++.++..+.+|..++++.|+.. .+++.+-
T Consensus 182 ---~N-----PL~hfQLrQLPsmt-sL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp----------~vPecly 242 (1255)
T KOG0444|consen 182 ---NN-----PLNHFQLRQLPSMT-SLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP----------IVPECLY 242 (1255)
T ss_pred ---CC-----hhhHHHHhcCccch-hhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC----------cchHHHh
Confidence 21 22333333333333 3444444443 233445566777788888888877643 3555565
Q ss_pred CCCCcCceEEeeecCccccccccccccCceEEEEeCCCCCCcCC-CCCCCCccceeeeccccCceE--eCccccccCCCC
Q 037574 787 LPSNLESMEMFYYRGESISLMMIMLSNKLRSLTLDRCVNLKQLP-GLGGLPSLESLTLRNMKRIEK--VGNEFLLTDRTS 863 (961)
Q Consensus 787 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~l~~--l~~~~~~~~~~~ 863 (961)
..++|+.|.++++....+. +....-.+|+.|+|+.| .+..+| .+..|+.|+.|.+.+ +++.. +|++
T Consensus 243 ~l~~LrrLNLS~N~iteL~-~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~-NkL~FeGiPSG-------- 311 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGNKITELN-MTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANN-NKLTFEGIPSG-------- 311 (1255)
T ss_pred hhhhhheeccCcCceeeee-ccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhcc-CcccccCCccc--------
Confidence 6678888888888776651 11123456888888877 566677 467788888888766 44432 2221
Q ss_pred CCCcccccCcccceeeccccccccccccccccCcccccccccceecccccccCcCCCCC-CC-CCCCCeEEEccccchhh
Q 037574 864 STGTAVSAFPKLKSLVFLKMKAWREWKYKTKRGKHYKIMPCLCSLTIGYCNELEMLPAE-HF-PDTLKDLKIISCSKLEK 941 (961)
Q Consensus 864 ~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~-~l-~~sL~~L~i~~c~~l~~ 941 (961)
.+.+-.|+.+...+. +|+-. ++++..++.|+.|.+. |+.|-.+|.. ++ |. |+.|++...|++.-
T Consensus 312 -----IGKL~~Levf~aanN-~LElV------PEglcRC~kL~kL~L~-~NrLiTLPeaIHlL~~-l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 312 -----IGKLIQLEVFHAANN-KLELV------PEGLCRCVKLQKLKLD-HNRLITLPEAIHLLPD-LKVLDLRENPNLVM 377 (1255)
T ss_pred -----hhhhhhhHHHHhhcc-ccccC------chhhhhhHHHHHhccc-ccceeechhhhhhcCC-cceeeccCCcCccC
Confidence 233444444444432 22222 4456677888888884 4777777753 23 55 88888888887765
Q ss_pred hh
Q 037574 942 SY 943 (961)
Q Consensus 942 ~~ 943 (961)
-.
T Consensus 378 PP 379 (1255)
T KOG0444|consen 378 PP 379 (1255)
T ss_pred CC
Confidence 44
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.79 E-value=2.3e-21 Score=207.49 Aligned_cols=322 Identities=23% Similarity=0.254 Sum_probs=239.7
Q ss_pred CCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcC
Q 037574 547 HEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKR 626 (961)
Q Consensus 547 ~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~ 626 (961)
..++.||++..|.+ ..+...+..++.||++.+..|+- +...+|.-+-++..|.+|||+.|+ +.+.|..+..
T Consensus 54 lqkLEHLs~~HN~L-~~vhGELs~Lp~LRsv~~R~N~L--KnsGiP~diF~l~dLt~lDLShNq------L~EvP~~LE~ 124 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQL-ISVHGELSDLPRLRSVIVRDNNL--KNSGIPTDIFRLKDLTILDLSHNQ------LREVPTNLEY 124 (1255)
T ss_pred Hhhhhhhhhhhhhh-HhhhhhhccchhhHHHhhhcccc--ccCCCCchhcccccceeeecchhh------hhhcchhhhh
Confidence 45789999999988 45667889999999999998872 222234446689999999999994 9999999999
Q ss_pred CCCcceEeccCCCCcccCCcc-hhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcccccCC-cCCCCCCCCCcC
Q 037574 627 LIHLRYLNLSKNNKIKKLPKT-LCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLSYMP-KGIERWSCLRTL 704 (961)
Q Consensus 627 l~~Lr~L~L~~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~~~p-~~i~~L~~L~~L 704 (961)
-+++-+|+||+|+ |..+|.+ +-+|..|-+|||++|. +..+|+.+.+|.+|+.|.+++|.+..+. ..+..+++|++|
T Consensus 125 AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vL 202 (1255)
T KOG0444|consen 125 AKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVL 202 (1255)
T ss_pred hcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhh
Confidence 9999999999999 9999976 4589999999999987 9999999999999999999999876542 123344555555
Q ss_pred CceEecCCCCCCCCCChhhhhcccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHHHHhc
Q 037574 705 SEFIVSGGNDDKKASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAVVEG 784 (961)
Q Consensus 705 ~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 784 (961)
...+... +....+..+..|.+|..+. ++-.++ ...+..+-++++|+.|+|+.|...+.. -+
T Consensus 203 hms~TqR-Tl~N~Ptsld~l~NL~dvD--lS~N~L------p~vPecly~l~~LrrLNLS~N~iteL~----------~~ 263 (1255)
T KOG0444|consen 203 HMSNTQR-TLDNIPTSLDDLHNLRDVD--LSENNL------PIVPECLYKLRNLRRLNLSGNKITELN----------MT 263 (1255)
T ss_pred hcccccc-hhhcCCCchhhhhhhhhcc--ccccCC------CcchHHHhhhhhhheeccCcCceeeee----------cc
Confidence 4433222 2223455666666666553 222222 223456778899999999998754210 11
Q ss_pred CCCCCCcCceEEeeecCccc-cccccccccCceEEEEeCCC-CCCcCC-CCCCCCccceeeeccccCceEeCccccccCC
Q 037574 785 LELPSNLESMEMFYYRGESI-SLMMIMLSNKLRSLTLDRCV-NLKQLP-GLGGLPSLESLTLRNMKRIEKVGNEFLLTDR 861 (961)
Q Consensus 785 l~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~~~-~~~~l~-~l~~lp~L~~L~L~~~~~l~~l~~~~~~~~~ 861 (961)
.....+|++|.++.+....+ .-++ .+++|+.|++.+|. ..+.+| .+|.|.+|+.+...+ ++++-+|+..+
T Consensus 264 ~~~W~~lEtLNlSrNQLt~LP~avc--KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglc---- 336 (1255)
T KOG0444|consen 264 EGEWENLETLNLSRNQLTVLPDAVC--KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLC---- 336 (1255)
T ss_pred HHHHhhhhhhccccchhccchHHHh--hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhh----
Confidence 11235899999999887766 3344 68899999998884 346677 599999999999988 77888887643
Q ss_pred CCCCCcccccCcccceeeccccccccccccccccCcccccccccceecccccccCcCCCC
Q 037574 862 TSSTGTAVSAFPKLKSLVFLKMKAWREWKYKTKRGKHYKIMPCLCSLTIGYCNELEMLPA 921 (961)
Q Consensus 862 ~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~ 921 (961)
-+++|++|.+... . -+.. ++.+..+|.|+.|++...|+|..-|-
T Consensus 337 ---------RC~kL~kL~L~~N-r--LiTL----PeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 337 ---------RCVKLQKLKLDHN-R--LITL----PEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred ---------hhHHHHHhccccc-c--eeec----hhhhhhcCCcceeeccCCcCccCCCC
Confidence 5788999987653 2 2333 55666899999999999999986653
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.78 E-value=1.6e-18 Score=219.31 Aligned_cols=338 Identities=20% Similarity=0.251 Sum_probs=230.4
Q ss_pred cCCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhc
Q 037574 546 SHEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIK 625 (961)
Q Consensus 546 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~ 625 (961)
.+.++|.|.+..+.. ..+|..+ ...+|+.|.+.++. +. .++..+..+++|+.|+|+++ ..+..+|. ++
T Consensus 587 lp~~Lr~L~~~~~~l-~~lP~~f-~~~~L~~L~L~~s~--l~--~L~~~~~~l~~Lk~L~Ls~~-----~~l~~ip~-ls 654 (1153)
T PLN03210 587 LPPKLRLLRWDKYPL-RCMPSNF-RPENLVKLQMQGSK--LE--KLWDGVHSLTGLRNIDLRGS-----KNLKEIPD-LS 654 (1153)
T ss_pred cCcccEEEEecCCCC-CCCCCcC-CccCCcEEECcCcc--cc--ccccccccCCCCCEEECCCC-----CCcCcCCc-cc
Confidence 356789999888776 5566555 57899999998875 22 24444678999999999987 33677775 88
Q ss_pred CCCCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCc-ccccCCcCCCCCCCCCcC
Q 037574 626 RLIHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGT-PLSYMPKGIERWSCLRTL 704 (961)
Q Consensus 626 ~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~-~l~~~p~~i~~L~~L~~L 704 (961)
.+++|++|+|++|..+..+|.++++|++|+.|++++|..+..+|..+ ++++|++|++++| .+..+|.. .++|+.|
T Consensus 655 ~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L 730 (1153)
T PLN03210 655 MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWL 730 (1153)
T ss_pred cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCee
Confidence 89999999999998889999999999999999999999899999877 7999999999554 44455543 2345555
Q ss_pred CceEecCCCCCCCCCChhhhhcccccCCceeEcCCCCCCh----hhhHhhccccccccCceeEEecCCCCcCCCccchHH
Q 037574 705 SEFIVSGGNDDKKASKLECLKSLNHLQGSLNIKGLGNVDK----DEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEA 780 (961)
Q Consensus 705 ~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~----~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 780 (961)
. +..+.....+..+ .+.+|..| .+..+..... ...........++|+.|.++.+... ..
T Consensus 731 ~---L~~n~i~~lP~~~-~l~~L~~L----~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l---------~~ 793 (1153)
T PLN03210 731 D---LDETAIEEFPSNL-RLENLDEL----ILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL---------VE 793 (1153)
T ss_pred e---cCCCccccccccc-cccccccc----cccccchhhccccccccchhhhhccccchheeCCCCCCc---------cc
Confidence 4 3333322222222 23333322 2222111000 0000001123468899999877532 22
Q ss_pred HHhcCCCCCCcCceEEeeecCcc-ccccccccccCceEEEEeCCCCCCcCCCCCCCCccceeeeccccCceEeCcccccc
Q 037574 781 VVEGLELPSNLESMEMFYYRGES-ISLMMIMLSNKLRSLTLDRCVNLKQLPGLGGLPSLESLTLRNMKRIEKVGNEFLLT 859 (961)
Q Consensus 781 ~l~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~l~~l~~~~~~~ 859 (961)
++..+..+++|+.|++.+|.... ++... .+++|+.|+|++|..+..+|.+ .++|+.|+|++ +.++.+|..
T Consensus 794 lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~-n~i~~iP~s---- 864 (1153)
T PLN03210 794 LPSSIQNLHKLEHLEIENCINLETLPTGI--NLESLESLDLSGCSRLRTFPDI--STNISDLNLSR-TGIEEVPWW---- 864 (1153)
T ss_pred cChhhhCCCCCCEEECCCCCCcCeeCCCC--CccccCEEECCCCCcccccccc--ccccCEeECCC-CCCccChHH----
Confidence 34445567899999998875433 23222 5789999999999888877754 47899999988 567776654
Q ss_pred CCCCCCCcccccCcccceeeccccccccccccccccCcccccccccceecccccccCcCCCCCCCCCC------------
Q 037574 860 DRTSSTGTAVSAFPKLKSLVFLKMKAWREWKYKTKRGKHYKIMPCLCSLTIGYCNELEMLPAEHFPDT------------ 927 (961)
Q Consensus 860 ~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~l~~s------------ 927 (961)
...+++|+.|.+.+|+++..+.. ....+++|+.|.+++|++|+.++....|.+
T Consensus 865 ---------i~~l~~L~~L~L~~C~~L~~l~~------~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~ 929 (1153)
T PLN03210 865 ---------IEKFSNLSFLDMNGCNNLQRVSL------NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKL 929 (1153)
T ss_pred ---------HhcCCCCCEEECCCCCCcCccCc------ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccC
Confidence 25689999999999999887654 344789999999999999987654322211
Q ss_pred --CCeEEEccccchh
Q 037574 928 --LKDLKIISCSKLE 940 (961)
Q Consensus 928 --L~~L~i~~c~~l~ 940 (961)
...+.+.+|.++.
T Consensus 930 p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 930 PSTVCINFINCFNLD 944 (1153)
T ss_pred CchhccccccccCCC
Confidence 2445667777665
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.78 E-value=5e-20 Score=196.43 Aligned_cols=271 Identities=20% Similarity=0.250 Sum_probs=132.3
Q ss_pred cCCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhccc-chhh
Q 037574 546 SHEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKV-PKQI 624 (961)
Q Consensus 546 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~l-p~~i 624 (961)
.+...+.|++++|.+...-+..|.++++|+.+.+..|. . ..+|.+..-..+|+.|+|.+| . +..+ .+.+
T Consensus 76 lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~--L--t~IP~f~~~sghl~~L~L~~N-----~-I~sv~se~L 145 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE--L--TRIPRFGHESGHLEKLDLRHN-----L-ISSVTSEEL 145 (873)
T ss_pred CccceeeeeccccccccCcHHHHhcCCcceeeeeccch--h--hhcccccccccceeEEeeecc-----c-cccccHHHH
Confidence 35566777777777765555666777777777776654 1 223333333445666666665 2 3332 2334
Q ss_pred cCCCCcceEeccCCCCcccCC-cchhccCCCcEeecCCCCCCccccc-ccccCCCCcEEEeCCcccccCCcC-CCCCCCC
Q 037574 625 KRLIHLRYLNLSKNNKIKKLP-KTLCELYNLQTLELSWCSNLRNLPQ-GMGKLINLRHVVNVGTPLSYMPKG-IERWSCL 701 (961)
Q Consensus 625 ~~l~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~l~~~p~~-i~~L~~L 701 (961)
.-++.||.||||.|. |..+| .++..=.+++.|+|++|. +..+-. .+..|.+|-.|.++.|.+..+|.. +.+|+.|
T Consensus 146 ~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L 223 (873)
T KOG4194|consen 146 SALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKL 223 (873)
T ss_pred HhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCcccccCHHHhhhcchh
Confidence 555556666666665 55555 334444566666666555 444432 255555666666666666655543 3335555
Q ss_pred CcCCceEecCCCCCCC-CCChhhhhcccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHH
Q 037574 702 RTLSEFIVSGGNDDKK-ASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEA 780 (961)
Q Consensus 702 ~~L~~~~~~~~~~~~~-~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 780 (961)
+.|.. ..+.+... +..+.+|.+|++|+ +..++........+..+.+++.|+|+.|+... .
T Consensus 224 ~~LdL---nrN~irive~ltFqgL~Sl~nlk-------lqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~---------v 284 (873)
T KOG4194|consen 224 ESLDL---NRNRIRIVEGLTFQGLPSLQNLK-------LQRNDISKLDDGAFYGLEKMEHLNLETNRLQA---------V 284 (873)
T ss_pred hhhhc---cccceeeehhhhhcCchhhhhhh-------hhhcCcccccCcceeeecccceeecccchhhh---------h
Confidence 55442 11111111 22334444444332 11111111122234445555666666554321 0
Q ss_pred HHhcCCCCCCcCceEEeeecCccc---cccccccccCceEEEEeCCCCCCcCC--CCCCCCccceeeeccccCceEe
Q 037574 781 VVEGLELPSNLESMEMFYYRGESI---SLMMIMLSNKLRSLTLDRCVNLKQLP--GLGGLPSLESLTLRNMKRIEKV 852 (961)
Q Consensus 781 ~l~~l~~~~~L~~L~l~~~~~~~~---~~~~~~~l~~L~~L~L~~~~~~~~l~--~l~~lp~L~~L~L~~~~~l~~l 852 (961)
--.++-.+..|+.|+++.+.+..+ .|- ..++|+.|+|++| .+..++ .+..|..|+.|.|+. +.+.++
T Consensus 285 n~g~lfgLt~L~~L~lS~NaI~rih~d~Ws---ftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l 356 (873)
T KOG4194|consen 285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSWS---FTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSH-NSIDHL 356 (873)
T ss_pred hcccccccchhhhhccchhhhheeecchhh---hcccceeEecccc-ccccCChhHHHHHHHhhhhcccc-cchHHH
Confidence 011222335555666665555554 332 2455666666555 344444 244455555555554 334443
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.75 E-value=2.5e-19 Score=191.15 Aligned_cols=339 Identities=20% Similarity=0.284 Sum_probs=238.4
Q ss_pred CCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccch-hhc
Q 037574 547 HEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPK-QIK 625 (961)
Q Consensus 547 ~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~-~i~ 625 (961)
.++++.+.+..|.+ ..+|.......+|..|.+.+|. +. .+..+.+.-++.||+|||+.| . +..+|. ++.
T Consensus 101 l~nLq~v~l~~N~L-t~IP~f~~~sghl~~L~L~~N~--I~-sv~se~L~~l~alrslDLSrN-----~-is~i~~~sfp 170 (873)
T KOG4194|consen 101 LPNLQEVNLNKNEL-TRIPRFGHESGHLEKLDLRHNL--IS-SVTSEELSALPALRSLDLSRN-----L-ISEIPKPSFP 170 (873)
T ss_pred CCcceeeeeccchh-hhcccccccccceeEEeeeccc--cc-cccHHHHHhHhhhhhhhhhhc-----h-hhcccCCCCC
Confidence 56788899998888 5677655666779999999986 43 445666888999999999998 3 777764 466
Q ss_pred CCCCcceEeccCCCCcccCC-cchhccCCCcEeecCCCCCCcccccc-cccCCCCcEEEeCCcccccCC-cCCCCCCCCC
Q 037574 626 RLIHLRYLNLSKNNKIKKLP-KTLCELYNLQTLELSWCSNLRNLPQG-MGKLINLRHVVNVGTPLSYMP-KGIERWSCLR 702 (961)
Q Consensus 626 ~l~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~l~~~p-~~i~~L~~L~ 702 (961)
.=.++++|+|++|. |+.+- ..|..|.+|-+|.|+.|. ++.+|.. +.+|++|+.|++..|.+..+. -.+..|.+|+
T Consensus 171 ~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~ 248 (873)
T KOG4194|consen 171 AKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQ 248 (873)
T ss_pred CCCCceEEeecccc-ccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhh
Confidence 66789999999999 88776 578899999999999988 9999965 566999999999888876552 2466777787
Q ss_pred cCCceEecCCCCCCC-CCChhhhhcccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHHH
Q 037574 703 TLSEFIVSGGNDDKK-ASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAV 781 (961)
Q Consensus 703 ~L~~~~~~~~~~~~~-~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 781 (961)
.|.. ..+.+... ...+-.+.++..|. ++.+.....-..++.+++.|+.|+|+.|... .--
T Consensus 249 nlkl---qrN~I~kL~DG~Fy~l~kme~l~-------L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~---------rih 309 (873)
T KOG4194|consen 249 NLKL---QRNDISKLDDGAFYGLEKMEHLN-------LETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ---------RIH 309 (873)
T ss_pred hhhh---hhcCcccccCcceeeecccceee-------cccchhhhhhcccccccchhhhhccchhhhh---------eee
Confidence 7763 22221111 22333444555443 3333334444567888999999999988542 112
Q ss_pred HhcCCCCCCcCceEEeeecCccccccccccccCceEEEEeCCCCCCcCC--CCCCCCccceeeeccccCceEeCcccccc
Q 037574 782 VEGLELPSNLESMEMFYYRGESISLMMIMLSNKLRSLTLDRCVNLKQLP--GLGGLPSLESLTLRNMKRIEKVGNEFLLT 859 (961)
Q Consensus 782 l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~--~l~~lp~L~~L~L~~~~~l~~l~~~~~~~ 859 (961)
.++....+.|+.|+++.+....++.-....+..|+.|.|+.| .++.+. .+..+.+|+.|+|++ +.+.-.-+..
T Consensus 310 ~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~-N~ls~~IEDa--- 384 (873)
T KOG4194|consen 310 IDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRS-NELSWCIEDA--- 384 (873)
T ss_pred cchhhhcccceeEeccccccccCChhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcC-CeEEEEEecc---
Confidence 344555689999999999988884444447888999999987 455554 466788999999987 4444332221
Q ss_pred CCCCCCCcccccCcccceeeccccccccccccccccCcccccccccceecccccccCcCCCCCCC-CCCCCeEEEc
Q 037574 860 DRTSSTGTAVSAFPKLKSLVFLKMKAWREWKYKTKRGKHYKIMPCLCSLTIGYCNELEMLPAEHF-PDTLKDLKII 934 (961)
Q Consensus 860 ~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~l-~~sL~~L~i~ 934 (961)
.....++|+|++|.+.+. +++.+.. .....+++|++|++.+ +-+.++-...| |..|++|.+.
T Consensus 385 ------a~~f~gl~~LrkL~l~gN-qlk~I~k-----rAfsgl~~LE~LdL~~-NaiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 385 ------AVAFNGLPSLRKLRLTGN-QLKSIPK-----RAFSGLEALEHLDLGD-NAIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred ------hhhhccchhhhheeecCc-eeeecch-----hhhccCcccceecCCC-Ccceeecccccccchhhhhhhc
Confidence 111356889999999885 5666653 2344789999999988 45555544444 4457777663
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.59 E-value=1.1e-17 Score=171.35 Aligned_cols=339 Identities=21% Similarity=0.267 Sum_probs=208.9
Q ss_pred CCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhc-
Q 037574 547 HEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIK- 625 (961)
Q Consensus 547 ~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~- 625 (961)
...+.|++...|.+ ..+|+.++.+.+|..|+++.|. + .++|+ |++|..|..|.+..| . ++.+|..++
T Consensus 182 m~~L~~ld~~~N~L-~tlP~~lg~l~~L~~LyL~~Nk--i--~~lPe-f~gcs~L~Elh~g~N-----~-i~~lpae~~~ 249 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLL-ETLPPELGGLESLELLYLRRNK--I--RFLPE-FPGCSLLKELHVGEN-----Q-IEMLPAEHLK 249 (565)
T ss_pred HHHHHhcccchhhh-hcCChhhcchhhhHHHHhhhcc--c--ccCCC-CCccHHHHHHHhccc-----H-HHhhHHHHhc
Confidence 45677888877777 6789999999999999999987 2 33554 899999999999998 4 899999887
Q ss_pred CCCCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcccccCCcCCCCCC---CCC
Q 037574 626 RLIHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLSYMPKGIERWS---CLR 702 (961)
Q Consensus 626 ~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~~~p~~i~~L~---~L~ 702 (961)
++.+|..|||++|+ ++++|..++.|.+|..||+++|. ++.+|.++++| +|+.|-+.+|.+.++...|-+.. -|+
T Consensus 250 ~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLK 326 (565)
T KOG0472|consen 250 HLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLK 326 (565)
T ss_pred ccccceeeeccccc-cccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHH
Confidence 89999999999999 99999999999999999999887 99999999999 99999999998876655432211 122
Q ss_pred cCCceEecC-C---------CCCCCCCChhhhhcccccCCceeEcCCCCC-ChhhhHhhccccccccCceeEEecCCCCc
Q 037574 703 TLSEFIVSG-G---------NDDKKASKLECLKSLNHLQGSLNIKGLGNV-DKDEIFKAELSKREKLLALGISFDRDDEE 771 (961)
Q Consensus 703 ~L~~~~~~~-~---------~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 771 (961)
+|.....+. - ..+........-..+.+.+ .|.+.+.... -..+++.+. +-.-....+++.+..
T Consensus 327 yLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tk-iL~~s~~qlt~VPdEVfea~--~~~~Vt~VnfskNqL--- 400 (565)
T KOG0472|consen 327 YLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTK-ILDVSDKQLTLVPDEVFEAA--KSEIVTSVNFSKNQL--- 400 (565)
T ss_pred HHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhh-hhcccccccccCCHHHHHHh--hhcceEEEecccchH---
Confidence 222111100 0 0000011111122222222 2222222111 122333321 111233444444432
Q ss_pred CCCccchHHHHhcCCCCCCcCceEEeeecCccccccc--cccccCceEEEEeCCCCCCcCC-CCCCCCccceeeeccccC
Q 037574 772 GRKKEDDEAVVEGLELPSNLESMEMFYYRGESISLMM--IMLSNKLRSLTLDRCVNLKQLP-GLGGLPSLESLTLRNMKR 848 (961)
Q Consensus 772 ~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~ 848 (961)
.+.+..+.....+.+.-+..+... +|.+ ...+++|+.|+|++| .+.++| .++.+..|+.|+++. +.
T Consensus 401 -------~elPk~L~~lkelvT~l~lsnn~i--sfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~-Nr 469 (565)
T KOG0472|consen 401 -------CELPKRLVELKELVTDLVLSNNKI--SFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSF-NR 469 (565)
T ss_pred -------hhhhhhhHHHHHHHHHHHhhcCcc--ccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheecccc-cc
Confidence 122222222222222222222222 3332 347899999999997 567788 578888999999987 34
Q ss_pred ceEeCccccccCCCCCCCcccccCcccceeeccccccccccccccccCcccccccccceecccccccCcCCCCCCC-CCC
Q 037574 849 IEKVGNEFLLTDRTSSTGTAVSAFPKLKSLVFLKMKAWREWKYKTKRGKHYKIMPCLCSLTIGYCNELEMLPAEHF-PDT 927 (961)
Q Consensus 849 l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~l-~~s 927 (961)
...+|.-.+ ....|+.+-.++. .+.... +.+...|.+|..|++.+ +.+..+|...- ..+
T Consensus 470 Fr~lP~~~y-------------~lq~lEtllas~n-qi~~vd-----~~~l~nm~nL~tLDL~n-Ndlq~IPp~Lgnmtn 529 (565)
T KOG0472|consen 470 FRMLPECLY-------------ELQTLETLLASNN-QIGSVD-----PSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTN 529 (565)
T ss_pred cccchHHHh-------------hHHHHHHHHhccc-cccccC-----hHHhhhhhhcceeccCC-CchhhCChhhccccc
Confidence 444443222 1122333322222 223222 33566788888888877 67777776422 456
Q ss_pred CCeEEEcccc
Q 037574 928 LKDLKIISCS 937 (961)
Q Consensus 928 L~~L~i~~c~ 937 (961)
|++|++.|.|
T Consensus 530 L~hLeL~gNp 539 (565)
T KOG0472|consen 530 LRHLELDGNP 539 (565)
T ss_pred eeEEEecCCc
Confidence 8888888876
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.50 E-value=4.8e-16 Score=175.54 Aligned_cols=125 Identities=27% Similarity=0.371 Sum_probs=86.9
Q ss_pred ccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcCCCC
Q 037574 550 FPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRLIH 629 (961)
Q Consensus 550 ~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~ 629 (961)
+.++++..|......-+...+.-+|++|+++++. .. . .|..+..+.+|+.|+++.|. +..+|.+++++.+
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~--~~-~-fp~~it~l~~L~~ln~s~n~------i~~vp~s~~~~~~ 92 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQ--IS-S-FPIQITLLSHLRQLNLSRNY------IRSVPSSCSNMRN 92 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccc--cc-c-CCchhhhHHHHhhcccchhh------HhhCchhhhhhhc
Confidence 5666676666532111233444458888888876 21 1 34446678888888888873 7888888888888
Q ss_pred cceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCc
Q 037574 630 LRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGT 686 (961)
Q Consensus 630 Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~ 686 (961)
|+||.|.+|. +..+|.++..+++|+.|++++|. ...+|.-+..+..+..+..++|
T Consensus 93 l~~lnL~~n~-l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 93 LQYLNLKNNR-LQSLPASISELKNLQYLDLSFNH-FGPIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred chhheeccch-hhcCchhHHhhhcccccccchhc-cCCCchhHHhhhHHHHHhhhcc
Confidence 8888888887 88888888888888888888876 6677766655555444444433
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.50 E-value=1.1e-16 Score=163.95 Aligned_cols=141 Identities=26% Similarity=0.399 Sum_probs=67.9
Q ss_pred cEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcCCCCc
Q 037574 551 PHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRLIHL 630 (961)
Q Consensus 551 r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L 630 (961)
..+.++.|.. ...|..++.+..+..|+++++. . ..+|+...++..|+.|+++.+. +..+|++|+.+..|
T Consensus 71 ~vl~~~~n~l-~~lp~aig~l~~l~~l~vs~n~--l--s~lp~~i~s~~~l~~l~~s~n~------~~el~~~i~~~~~l 139 (565)
T KOG0472|consen 71 TVLNVHDNKL-SQLPAAIGELEALKSLNVSHNK--L--SELPEQIGSLISLVKLDCSSNE------LKELPDSIGRLLDL 139 (565)
T ss_pred eEEEeccchh-hhCCHHHHHHHHHHHhhcccch--H--hhccHHHhhhhhhhhhhccccc------eeecCchHHHHhhh
Confidence 3444444444 2344445555555555554443 1 1233334455555555555542 44455555555555
Q ss_pred ceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcccccCCcCCCCCCCCCcC
Q 037574 631 RYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLSYMPKGIERWSCLRTL 704 (961)
Q Consensus 631 r~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~~~p~~i~~L~~L~~L 704 (961)
..|+..+|. +..+|..++++..|..|++.+|. +..+|+....++.|+||+...|-+..+|+.++.+.+|..|
T Consensus 140 ~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~L 211 (565)
T KOG0472|consen 140 EDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELL 211 (565)
T ss_pred hhhhccccc-cccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHH
Confidence 555555444 55555555555555555555544 4444444434555555555444455555555544444433
No 14
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.49 E-value=2.9e-12 Score=161.89 Aligned_cols=298 Identities=14% Similarity=0.172 Sum_probs=182.6
Q ss_pred CCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeC-CCCCHHH
Q 037574 162 PLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSAS-CPRDEIR 240 (961)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s-~~~~~~~ 240 (961)
+..++-|+.-.+.+ ... ...+++.|+|++|.||||++.++.+. ++.++|+++. .+-++..
T Consensus 13 ~~~~~~R~rl~~~l----~~~---------~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~ 73 (903)
T PRK04841 13 LHNTVVRERLLAKL----SGA---------NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPER 73 (903)
T ss_pred ccccCcchHHHHHH----hcc---------cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHH
Confidence 44567777544444 321 45689999999999999999998862 2368999986 4456677
Q ss_pred HHHHHHHHhcCCCCC-------------cccHHHHHHHHHHHhc--CCceEEEeecccCCCChhhHHHHHHhccCCCCCc
Q 037574 241 VAKAILESLKGSVSS-------------QVEMETVLQYINEFVQ--GKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGS 305 (961)
Q Consensus 241 ~~~~il~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs 305 (961)
+...++..+...... ..+...+...+...+. +.+++|||||+..-++....+.+...++....+.
T Consensus 74 f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~ 153 (903)
T PRK04841 74 FASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENL 153 (903)
T ss_pred HHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCe
Confidence 777777777422111 0122233333333332 6899999999963333333345555555556677
Q ss_pred EEEEecCCCcccccccccccccCCCCCcceeecC----CCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCch
Q 037574 306 RILVTRRGEKNGTNMTEIGLGEKDGTNMTEIGLG----ELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLP 381 (961)
Q Consensus 306 ~ilvTtR~~~v~~~~~~~~~~~~~~~~~~~~~l~----~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~P 381 (961)
++|||||........... ... ....+. +|+.+|+.++|.......- -.+....|.+.|+|.|
T Consensus 154 ~lv~~sR~~~~~~~~~l~-----~~~--~~~~l~~~~l~f~~~e~~~ll~~~~~~~~-------~~~~~~~l~~~t~Gwp 219 (903)
T PRK04841 154 TLVVLSRNLPPLGIANLR-----VRD--QLLEIGSQQLAFDHQEAQQFFDQRLSSPI-------EAAESSRLCDDVEGWA 219 (903)
T ss_pred EEEEEeCCCCCCchHhHH-----hcC--cceecCHHhCCCCHHHHHHHHHhccCCCC-------CHHHHHHHHHHhCChH
Confidence 898999974322110000 001 334455 9999999999987542211 1235678999999999
Q ss_pred HHHHHHHhhccCCCC-HHHHHHHhhhhhcccchhhhhccCCCCcchhhhHh-hhcCCChHHHHHhhHhccCCCCcccChH
Q 037574 382 FAVKILGSLLRFKTS-IEEWQSVLDSEIWNLDSKICKRAGVGDEYFSPLLL-SYYDLSPALKKCFLYCSIFPKNYEIEKD 459 (961)
Q Consensus 382 Lai~~~~~~l~~~~~-~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-sy~~L~~~~k~cfl~~a~fp~~~~i~~~ 459 (961)
+++..++..+..... ... .. +.+.. .....+...+.- -|+.||++.+..++..|+++ .++.+
T Consensus 220 ~~l~l~~~~~~~~~~~~~~---~~----~~~~~------~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~ 283 (903)
T PRK04841 220 TALQLIALSARQNNSSLHD---SA----RRLAG------INASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDA 283 (903)
T ss_pred HHHHHHHHHHhhCCCchhh---hh----HhhcC------CCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHH
Confidence 999998877654321 110 00 00000 011224444333 37899999999999999996 34433
Q ss_pred HHHHHHHHcCcccccccccHHHHHHHHHHHHHhCCCCcccccCCCCCeEEEEEeCchHHHHHHHhc
Q 037574 460 RLIKLWMAQGYLKLLESEDMEVIGEEYFANLASRSLFQDFQKSEFDGRIIRCQMHPIVHEFAHFLT 525 (961)
Q Consensus 460 ~Li~~W~a~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~~Hdlv~~~a~~~~ 525 (961)
.+- .+... +.+...+++|.+.+++....... + . +|+.|++++++.....
T Consensus 284 l~~------~l~~~-------~~~~~~L~~l~~~~l~~~~~~~~-~--~-~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 284 LIV------RVTGE-------ENGQMRLEELERQGLFIQRMDDS-G--E-WFRYHPLFASFLRHRC 332 (903)
T ss_pred HHH------HHcCC-------CcHHHHHHHHHHCCCeeEeecCC-C--C-EEehhHHHHHHHHHHH
Confidence 222 11111 12467899999999975432211 1 1 7899999999998764
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.45 E-value=2.7e-15 Score=169.63 Aligned_cols=224 Identities=19% Similarity=0.216 Sum_probs=118.0
Q ss_pred CCcEEEeCCcccccCCcCCCCCCCCCcCCceEecCCCCCCCCCChhhhhcccccCCceeEcCCCCCChhhhHhhcccccc
Q 037574 677 NLRHVVNVGTPLSYMPKGIERWSCLRTLSEFIVSGGNDDKKASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKRE 756 (961)
Q Consensus 677 ~L~~L~l~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~ 756 (961)
+|++++++.|++..+|..++.+.+|..|.. ..+.+...+..+....+|..|. ..+..+ +..+..+...+
T Consensus 242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~---n~N~l~~lp~ri~~~~~L~~l~--~~~nel------~yip~~le~~~ 310 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLPEWIGACANLEALNA---NHNRLVALPLRISRITSLVSLS--AAYNEL------EYIPPFLEGLK 310 (1081)
T ss_pred cceeeecchhhhhcchHHHHhcccceEecc---cchhHHhhHHHHhhhhhHHHHH--hhhhhh------hhCCCcccccc
Confidence 455555556666677766777777776653 2233222333333334443332 111111 22233455567
Q ss_pred ccCceeEEecCCCCcCCCccchHHHHhc----C---------------CCCCCcCceEEeeecCccccccccccccCceE
Q 037574 757 KLLALGISFDRDDEEGRKKEDDEAVVEG----L---------------ELPSNLESMEMFYYRGESISLMMIMLSNKLRS 817 (961)
Q Consensus 757 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~----l---------------~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 817 (961)
+|++|+|..+....... ....++.. + ..++.|+.|.+.++....-.|-....+.+|+.
T Consensus 311 sL~tLdL~~N~L~~lp~---~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKV 387 (1081)
T KOG0618|consen 311 SLRTLDLQSNNLPSLPD---NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKV 387 (1081)
T ss_pred eeeeeeehhccccccch---HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceee
Confidence 78888887775532111 11111000 0 01234556666666555443333346777777
Q ss_pred EEEeCCCCCCcCC--CCCCCCccceeeeccccCceEeCccccccCCCCCCCcccccCcccceeecccccccccccccccc
Q 037574 818 LTLDRCVNLKQLP--GLGGLPSLESLTLRNMKRIEKVGNEFLLTDRTSSTGTAVSAFPKLKSLVFLKMKAWREWKYKTKR 895 (961)
Q Consensus 818 L~L~~~~~~~~l~--~l~~lp~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~ 895 (961)
|+|++| .+..+| .+.+++.|+.|.|+| ++++.+|... ..++.|+.|...+. .+ ..+
T Consensus 388 LhLsyN-rL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tv-------------a~~~~L~tL~ahsN-~l--~~f---- 445 (1081)
T KOG0618|consen 388 LHLSYN-RLNSFPASKLRKLEELEELNLSG-NKLTTLPDTV-------------ANLGRLHTLRAHSN-QL--LSF---- 445 (1081)
T ss_pred eeeccc-ccccCCHHHHhchHHhHHHhccc-chhhhhhHHH-------------HhhhhhHHHhhcCC-ce--eec----
Confidence 777776 455666 366777777777777 6677776442 24555555544332 11 112
Q ss_pred CcccccccccceecccccccCcCCCC-CCCC-CCCCeEEEccccc
Q 037574 896 GKHYKIMPCLCSLTIGYCNELEMLPA-EHFP-DTLKDLKIISCSK 938 (961)
Q Consensus 896 ~~~~~~~p~L~~L~i~~C~~L~~lp~-~~l~-~sL~~L~i~~c~~ 938 (961)
+ ....+|.|+.++|+. ++|..+-. ..+| ++|++|+++|...
T Consensus 446 P-e~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 446 P-ELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred h-hhhhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCcc
Confidence 2 344677888888854 66664322 1234 5688888887763
No 16
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.39 E-value=1.8e-10 Score=130.35 Aligned_cols=324 Identities=15% Similarity=0.113 Sum_probs=188.3
Q ss_pred CCCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHH
Q 037574 161 DPLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIR 240 (961)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 240 (961)
.|..++||+++++++...+.....+ .....+.|+|++|+|||++++.++++.......-..+++++....+...
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~ 101 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRG------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYA 101 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCC------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHH
Confidence 4567999999999999998653211 3445678999999999999999998533222123456677777778889
Q ss_pred HHHHHHHHhcCCC--CCcccHHHHHHHHHHHhc--CCceEEEeecccCCC---ChhhHHHHHHhccCCCCCcE--EEEec
Q 037574 241 VAKAILESLKGSV--SSQVEMETVLQYINEFVQ--GKKVLLVLDDVWWNA---CPRYWEQLMYSLKSGSEGSR--ILVTR 311 (961)
Q Consensus 241 ~~~~il~~l~~~~--~~~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~---~~~~~~~l~~~l~~~~~gs~--ilvTt 311 (961)
++..++.++.... ....+.+++...+.+.+. +++.+||+|+++.-. ..+.+..+...+... .+++ +|.++
T Consensus 102 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-~~~~v~vI~i~ 180 (394)
T PRK00411 102 IFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-PGARIGVIGIS 180 (394)
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-CCCeEEEEEEE
Confidence 9999999997622 223356677777777775 456899999996211 122333333333222 2333 56666
Q ss_pred CCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCC--CCCCCccchHHHHHHHHHhcCCchHHHHHHHh
Q 037574 312 RGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDG--RSSDDREKFEPIGRLVVGKCKGLPFAVKILGS 389 (961)
Q Consensus 312 R~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~l~~~~~~I~~~c~G~PLai~~~~~ 389 (961)
....+....... ... ......+.+.+++.++..+++...+... ....++..+..+++......|..+.|+..+-.
T Consensus 181 ~~~~~~~~l~~~-~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~ 257 (394)
T PRK00411 181 SDLTFLYILDPR-VKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRR 257 (394)
T ss_pred CCcchhhhcCHH-HHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 555443332111 000 0112568999999999999998876321 11122233444444444445667777776643
Q ss_pred hcc----C---CCCHHHHHHHhhhhhcccchhhhhccCCCCcchhhhHhhhcCCChHHHHHhhHhccCCC--CcccChHH
Q 037574 390 LLR----F---KTSIEEWQSVLDSEIWNLDSKICKRAGVGDEYFSPLLLSYYDLSPALKKCFLYCSIFPK--NYEIEKDR 460 (961)
Q Consensus 390 ~l~----~---~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~a~fp~--~~~i~~~~ 460 (961)
+.. . .-+.++...+.+... .....-.+..||.+.|..+..++..-+ ...+...+
T Consensus 258 a~~~a~~~~~~~I~~~~v~~a~~~~~-----------------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~ 320 (394)
T PRK00411 258 AGLIAEREGSRKVTEEDVRKAYEKSE-----------------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGE 320 (394)
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHH
Confidence 321 1 123455555544321 122344578999988887665553321 13455555
Q ss_pred HHHH--HHHcCcccccccccHHHHHHHHHHHHHhCCCCccccc--CCCCCeEEEEEeCc
Q 037574 461 LIKL--WMAQGYLKLLESEDMEVIGEEYFANLASRSLFQDFQK--SEFDGRIIRCQMHP 515 (961)
Q Consensus 461 Li~~--W~a~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~--~~~~~~~~~~~~Hd 515 (961)
+... .+++.+-.. ..+ ......|+++|...+++..... +..|..+ .++++.
T Consensus 321 i~~~y~~l~~~~~~~--~~~-~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~-~~~~~~ 375 (394)
T PRK00411 321 VYEEYKELCEELGYE--PRT-HTRFYEYINKLDMLGIINTRYSGKGGRGRTR-LISLSY 375 (394)
T ss_pred HHHHHHHHHHHcCCC--cCc-HHHHHHHHHHHHhcCCeEEEEecCCCCCCeE-EEEecC
Confidence 5532 222221110 011 2334669999999999986543 2344444 565543
No 17
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.27 E-value=2.1e-10 Score=122.51 Aligned_cols=193 Identities=19% Similarity=0.208 Sum_probs=118.1
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH----
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINE---- 268 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~---- 268 (961)
+..++.|+|++|+|||||++.+++..... .+ ..+|+ +....+..+++..|+..++..... .+.......+..
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIE 117 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHH
Confidence 35689999999999999999999853311 11 22333 333457788899999888765422 222233333333
Q ss_pred H-hcCCceEEEeecccCCCChhhHHHHHHhccCC---CCCcEEEEecCCCcccccccccccccCCCCCcceeecCCCChH
Q 037574 269 F-VQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG---SEGSRILVTRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAK 344 (961)
Q Consensus 269 ~-l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~---~~gs~ilvTtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~ 344 (961)
. ..+++++||+||+| ..+...++.+....... .....|++|... .....+...............+.+++++.+
T Consensus 118 ~~~~~~~~vliiDe~~-~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQ-NLTPELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHhCCCCeEEEEECcc-cCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 2 26788999999998 55566677766433321 222344555443 222111110000000111256889999999
Q ss_pred HHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHHHhhc
Q 037574 345 ECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKILGSLL 391 (961)
Q Consensus 345 ~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~~~~l 391 (961)
|..+++...+..........--.+..+.|++.++|.|..|..++..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999987764322211112335678999999999999999998876
No 18
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.26 E-value=3.3e-12 Score=153.43 Aligned_cols=266 Identities=26% Similarity=0.320 Sum_probs=163.4
Q ss_pred ccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccch-hhcCCCCcceEeccCCCCcccCCc
Q 037574 568 VYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPK-QIKRLIHLRYLNLSKNNKIKKLPK 646 (961)
Q Consensus 568 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~i~~lp~ 646 (961)
.......|...+.++.. ...+. -..++.|++|-+..+. ..+..++. .|..+++||+|||++|..+..||+
T Consensus 519 ~~~~~~~rr~s~~~~~~----~~~~~-~~~~~~L~tLll~~n~----~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~ 589 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKI----EHIAG-SSENPKLRTLLLQRNS----DWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS 589 (889)
T ss_pred ccchhheeEEEEeccch----hhccC-CCCCCccceEEEeecc----hhhhhcCHHHHhhCcceEEEECCCCCccCcCCh
Confidence 34446778887777651 11121 2345579999999883 11444443 478899999999999998999999
Q ss_pred chhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCccc-ccCCcCCCCCCCCCcCCceEecCCCCCCCCCChhhhh
Q 037574 647 TLCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPL-SYMPKGIERWSCLRTLSEFIVSGGNDDKKASKLECLK 725 (961)
Q Consensus 647 ~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l-~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~ 725 (961)
+|+.|.+||+|+++++. +..+|.++.+|++|.||++..+.. ..+|..+..|++|++|..+... .......+.++.
T Consensus 590 ~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~---~~~~~~~l~el~ 665 (889)
T KOG4658|consen 590 SIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA---LSNDKLLLKELE 665 (889)
T ss_pred HHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc---cccchhhHHhhh
Confidence 99999999999999987 999999999999999999965543 3343444558888888766443 111133444444
Q ss_pred cccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHHHHhcCCCCCCcCceEEeeecCcccc
Q 037574 726 SLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAVVEGLELPSNLESMEMFYYRGESIS 805 (961)
Q Consensus 726 ~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~ 805 (961)
+|.+|. .|...... ..+++.+.....|.++
T Consensus 666 ~Le~L~----------------------------~ls~~~~s-----------~~~~e~l~~~~~L~~~----------- 695 (889)
T KOG4658|consen 666 NLEHLE----------------------------NLSITISS-----------VLLLEDLLGMTRLRSL----------- 695 (889)
T ss_pred cccchh----------------------------hheeecch-----------hHhHhhhhhhHHHHHH-----------
Confidence 444443 22222111 0111111111111111
Q ss_pred ccccccccCceEEEEeCCCCCCcCCCCCCCCccceeeeccccCceEeCccccccCCCCCCCcccc-cCcccceeeccccc
Q 037574 806 LMMIMLSNKLRSLTLDRCVNLKQLPGLGGLPSLESLTLRNMKRIEKVGNEFLLTDRTSSTGTAVS-AFPKLKSLVFLKMK 884 (961)
Q Consensus 806 ~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~-~fp~L~~L~l~~~~ 884 (961)
.+.+.+.+|......+.++.+.+|+.|.+.+|...+...... .... .. .||++..+.+.+|.
T Consensus 696 ---------~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~-~~~~-------~~~~f~~l~~~~~~~~~ 758 (889)
T KOG4658|consen 696 ---------LQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWE-ESLI-------VLLCFPNLSKVSILNCH 758 (889)
T ss_pred ---------hHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccc-cccc-------hhhhHHHHHHHHhhccc
Confidence 111222223334445567777888888888776543322111 0000 11 38888888888887
Q ss_pred cccccccccccCcccccccccceecccccccCcCCC
Q 037574 885 AWREWKYKTKRGKHYKIMPCLCSLTIGYCNELEMLP 920 (961)
Q Consensus 885 ~l~~~~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp 920 (961)
.++...+ ....|+|+.|.+..|+.+..+.
T Consensus 759 ~~r~l~~-------~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 759 MLRDLTW-------LLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred cccccch-------hhccCcccEEEEecccccccCC
Confidence 7665443 1257899999999998887543
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.26 E-value=4.1e-11 Score=140.88 Aligned_cols=254 Identities=20% Similarity=0.196 Sum_probs=159.4
Q ss_pred ccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcCCCC
Q 037574 550 FPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRLIH 629 (961)
Q Consensus 550 ~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~ 629 (961)
-..|++..+.+. .+|..+. ++|+.|.+.+|. +. . +|. .+++|++|+|++|. +..+|.. ..+
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~--Lt-~-LP~---lp~~Lk~LdLs~N~------LtsLP~l---p~s 263 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNN--LT-S-LPA---LPPELRTLEVSGNQ------LTSLPVL---PPG 263 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCc--CC-C-CCC---CCCCCcEEEecCCc------cCcccCc---ccc
Confidence 345677777763 5665554 478888888775 22 1 222 35788889998883 6777753 457
Q ss_pred cceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcccccCCcCCCCCCCCCcCCceEe
Q 037574 630 LRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLSYMPKGIERWSCLRTLSEFIV 709 (961)
Q Consensus 630 Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~~~p~~i~~L~~L~~L~~~~~ 709 (961)
|+.|+|++|. +..+|.. +.+|+.|++++|. +..+|.. +++|++|++++|++..+|.... +|+.|. +
T Consensus 264 L~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~---~L~~L~---L 329 (788)
T PRK15387 264 LLELSIFSNP-LTHLPAL---PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLASLPALPS---ELCKLW---A 329 (788)
T ss_pred cceeeccCCc-hhhhhhc---hhhcCEEECcCCc-ccccccc---ccccceeECCCCccccCCCCcc---cccccc---c
Confidence 8888888887 8888763 3567888888876 7778753 4678888888888877765332 233332 1
Q ss_pred cCCCCCCCCCChhhhhcccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHHHHhcCCCCC
Q 037574 710 SGGNDDKKASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAVVEGLELPS 789 (961)
Q Consensus 710 ~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~ 789 (961)
..+. +..++. + ..+|+.|+|+.|.... + .. .++
T Consensus 330 s~N~-------L~~LP~-------------------------l--p~~Lq~LdLS~N~Ls~----------L-P~--lp~ 362 (788)
T PRK15387 330 YNNQ-------LTSLPT-------------------------L--PSGLQELSVSDNQLAS----------L-PT--LPS 362 (788)
T ss_pred ccCc-------cccccc-------------------------c--ccccceEecCCCccCC----------C-CC--CCc
Confidence 1111 100000 0 1367777787765431 1 11 135
Q ss_pred CcCceEEeeecCccccccccccccCceEEEEeCCCCCCcCCCCCCCCccceeeeccccCceEeCccccccCCCCCCCccc
Q 037574 790 NLESMEMFYYRGESISLMMIMLSNKLRSLTLDRCVNLKQLPGLGGLPSLESLTLRNMKRIEKVGNEFLLTDRTSSTGTAV 869 (961)
Q Consensus 790 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~ 869 (961)
+|..|.++++....++. ...+|+.|+|++| .+..+|.. .++|+.|++++ +.++.+|.
T Consensus 363 ~L~~L~Ls~N~L~~LP~----l~~~L~~LdLs~N-~Lt~LP~l--~s~L~~LdLS~-N~LssIP~--------------- 419 (788)
T PRK15387 363 ELYKLWAYNNRLTSLPA----LPSGLKELIVSGN-RLTSLPVL--PSELKELMVSG-NRLTSLPM--------------- 419 (788)
T ss_pred ccceehhhccccccCcc----cccccceEEecCC-cccCCCCc--ccCCCEEEccC-CcCCCCCc---------------
Confidence 77888887776655432 2357899999887 45567654 36899999988 44665542
Q ss_pred ccCcccceeeccccccccccccccccCcccccccccceecccccc
Q 037574 870 SAFPKLKSLVFLKMKAWREWKYKTKRGKHYKIMPCLCSLTIGYCN 914 (961)
Q Consensus 870 ~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~C~ 914 (961)
.+.+|+.|.+.++ ++..++ .....+++|+.|++++++
T Consensus 420 -l~~~L~~L~Ls~N-qLt~LP------~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 420 -LPSGLLSLSVYRN-QLTRLP------ESLIHLSSETTVNLEGNP 456 (788)
T ss_pred -chhhhhhhhhccC-cccccC------hHHhhccCCCeEECCCCC
Confidence 2345777777664 344333 244578889999998864
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.26 E-value=1.7e-13 Score=124.55 Aligned_cols=129 Identities=25% Similarity=0.418 Sum_probs=91.4
Q ss_pred cccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcccCCc
Q 037574 567 SVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKKLPK 646 (961)
Q Consensus 567 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~ 646 (961)
.+.+++++..|.+++|. . ...|.-+..+.+|++|++.+|+ ++++|.+|+.+++||.|++.-|. +..+|.
T Consensus 28 gLf~~s~ITrLtLSHNK--l--~~vppnia~l~nlevln~~nnq------ie~lp~~issl~klr~lnvgmnr-l~~lpr 96 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNK--L--TVVPPNIAELKNLEVLNLSNNQ------IEELPTSISSLPKLRILNVGMNR-LNILPR 96 (264)
T ss_pred cccchhhhhhhhcccCc--e--eecCCcHHHhhhhhhhhcccch------hhhcChhhhhchhhhheecchhh-hhcCcc
Confidence 34555666666666665 2 2233346677778888887773 77788888888888888887777 777787
Q ss_pred chhccCCCcEeecCCCCC-CcccccccccCCCCcEEEeCCcccccCCcCCCCCCCCCcCCc
Q 037574 647 TLCELYNLQTLELSWCSN-LRNLPQGMGKLINLRHVVNVGTPLSYMPKGIERWSCLRTLSE 706 (961)
Q Consensus 647 ~i~~L~~L~~L~l~~~~~-l~~lP~~i~~L~~L~~L~l~~~~l~~~p~~i~~L~~L~~L~~ 706 (961)
.|+.++.|++||+++|+. -..+|..+..|..|+-|++++|.+..+|..+++|++||.|..
T Consensus 97 gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~l 157 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSL 157 (264)
T ss_pred ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEee
Confidence 788888888888877652 234677777777788888877777777877887777777653
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.25 E-value=1.9e-13 Score=124.25 Aligned_cols=145 Identities=24% Similarity=0.361 Sum_probs=86.4
Q ss_pred CCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcCC
Q 037574 548 EKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRL 627 (961)
Q Consensus 548 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l 627 (961)
+.+.++.++.|.+ ..+|..+..+.+|..|+++++. + .-+|..+++++.||.|++..| . +..+|.+||.+
T Consensus 33 s~ITrLtLSHNKl-~~vppnia~l~nlevln~~nnq--i--e~lp~~issl~klr~lnvgmn-----r-l~~lprgfgs~ 101 (264)
T KOG0617|consen 33 SNITRLTLSHNKL-TVVPPNIAELKNLEVLNLSNNQ--I--EELPTSISSLPKLRILNVGMN-----R-LNILPRGFGSF 101 (264)
T ss_pred hhhhhhhcccCce-eecCCcHHHhhhhhhhhcccch--h--hhcChhhhhchhhhheecchh-----h-hhcCccccCCC
Confidence 3455666666666 3445556666666666666654 2 223444566666666666665 2 55666666666
Q ss_pred CCcceEeccCCCCcc--cCCcchhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcccccCCcCCCCCCCCCcCC
Q 037574 628 IHLRYLNLSKNNKIK--KLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLSYMPKGIERWSCLRTLS 705 (961)
Q Consensus 628 ~~Lr~L~L~~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~~~p~~i~~L~~L~~L~ 705 (961)
+-|..|||++|+ +. .+|..|.-+..|+.|+++.|. .+.+|.++++|++|+-|.+.+|.+.++|..++.|+.|+.|.
T Consensus 102 p~levldltynn-l~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 102 PALEVLDLTYNN-LNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELH 179 (264)
T ss_pred chhhhhhccccc-cccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHh
Confidence 666666666655 32 356656566666666666654 56666666666666666666666666666666666655554
No 22
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.20 E-value=1.9e-09 Score=122.80 Aligned_cols=299 Identities=21% Similarity=0.223 Sum_probs=196.7
Q ss_pred CCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCC-CCCHHH
Q 037574 162 PLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASC-PRDEIR 240 (961)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~ 240 (961)
+...+-|.. +.+.|... .+.+.+.|..++|.|||||+.+.+. +. ..=..+.|++.+. +-++.+
T Consensus 18 ~~~~v~R~r----L~~~L~~~---------~~~RL~li~APAGfGKttl~aq~~~--~~-~~~~~v~Wlslde~dndp~r 81 (894)
T COG2909 18 PDNYVVRPR----LLDRLRRA---------NDYRLILISAPAGFGKTTLLAQWRE--LA-ADGAAVAWLSLDESDNDPAR 81 (894)
T ss_pred cccccccHH----HHHHHhcC---------CCceEEEEeCCCCCcHHHHHHHHHH--hc-CcccceeEeecCCccCCHHH
Confidence 445666654 55555543 4679999999999999999999975 11 2224689999764 568888
Q ss_pred HHHHHHHHhcCCCC-------------CcccHHHHHHHHHHHhc--CCceEEEeecccCCCChhhHHHHHHhccCCCCCc
Q 037574 241 VAKAILESLKGSVS-------------SQVEMETVLQYINEFVQ--GKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGS 305 (961)
Q Consensus 241 ~~~~il~~l~~~~~-------------~~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs 305 (961)
+...++..+..-.+ ...+...+.+.+...+. .++..+||||..--.++.--+.+...+.....+-
T Consensus 82 F~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l 161 (894)
T COG2909 82 FLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENL 161 (894)
T ss_pred HHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCe
Confidence 99999988874322 12344556666666554 4689999999963344444455666666777888
Q ss_pred EEEEecCCCccc---ccccccccccCCCCCcceeecC----CCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcC
Q 037574 306 RILVTRRGEKNG---TNMTEIGLGEKDGTNMTEIGLG----ELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCK 378 (961)
Q Consensus 306 ~ilvTtR~~~v~---~~~~~~~~~~~~~~~~~~~~l~----~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~ 378 (961)
.+|||||+..-. +..-.. ..+++. .|+.+|+.++|.......- -+.-++.+.+..+
T Consensus 162 ~lvv~SR~rP~l~la~lRlr~----------~llEi~~~~Lrf~~eE~~~fl~~~~~l~L-------d~~~~~~L~~~te 224 (894)
T COG2909 162 TLVVTSRSRPQLGLARLRLRD----------ELLEIGSEELRFDTEEAAAFLNDRGSLPL-------DAADLKALYDRTE 224 (894)
T ss_pred EEEEEeccCCCCcccceeehh----------hHHhcChHhhcCChHHHHHHHHHcCCCCC-------ChHHHHHHHhhcc
Confidence 999999987532 222111 333333 6899999999988642111 1234788999999
Q ss_pred CchHHHHHHHhhccCCCCHHHHHHHhhhhhcccchhhhhccCCCCcchhh-hHhhhcCCChHHHHHhhHhccCCCCcccC
Q 037574 379 GLPFAVKILGSLLRFKTSIEEWQSVLDSEIWNLDSKICKRAGVGDEYFSP-LLLSYYDLSPALKKCFLYCSIFPKNYEIE 457 (961)
Q Consensus 379 G~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~-l~~sy~~L~~~~k~cfl~~a~fp~~~~i~ 457 (961)
|-+-|+..++-.++.+.+.+.-...+.-... .+..- ..--++.||+++|..++-||+++.=.
T Consensus 225 GW~~al~L~aLa~~~~~~~~q~~~~LsG~~~--------------~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f~--- 287 (894)
T COG2909 225 GWAAALQLIALALRNNTSAEQSLRGLSGAAS--------------HLSDYLVEEVLDRLPPELRDFLLQTSVLSRFN--- 287 (894)
T ss_pred cHHHHHHHHHHHccCCCcHHHHhhhccchHH--------------HHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhh---
Confidence 9999999999888844444433332221100 01111 12235789999999999999984421
Q ss_pred hHHHHHHHHHcCcccccccccHHHHHHHHHHHHHhCCCCcccccCCCCCeEEEEEeCchHHHHHHHhccC
Q 037574 458 KDRLIKLWMAQGYLKLLESEDMEVIGEEYFANLASRSLFQDFQKSEFDGRIIRCQMHPIVHEFAHFLTKS 527 (961)
Q Consensus 458 ~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~~Hdlv~~~a~~~~~~ 527 (961)
..|+..- +.++-+...+++|.+++|+-..-.+..+ +|+.|.+..||.+.-...
T Consensus 288 -~eL~~~L------------tg~~ng~amLe~L~~~gLFl~~Ldd~~~----WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 288 -DELCNAL------------TGEENGQAMLEELERRGLFLQRLDDEGQ----WFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred -HHHHHHH------------hcCCcHHHHHHHHHhCCCceeeecCCCc----eeehhHHHHHHHHhhhcc
Confidence 2233221 1233467789999999998655443333 899999999998766544
No 23
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.18 E-value=9.6e-09 Score=115.02 Aligned_cols=312 Identities=14% Similarity=0.127 Sum_probs=174.3
Q ss_pred CCCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhh-ccC---ceeEEEEeCCCC
Q 037574 161 DPLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVK-ANF---DKRIWVSASCPR 236 (961)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F---~~~~wv~~s~~~ 236 (961)
.|..++||++++++|..++.....+ .....+.|+|++|+|||++++.++++.... ... -..+|+++....
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~ 86 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRG------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILD 86 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcC------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCC
Confidence 3457999999999999998753211 344678999999999999999999842211 111 145678877777
Q ss_pred CHHHHHHHHHHHhc---CCCC-CcccHHHHHHHHHHHhc--CCceEEEeecccCCC--ChhhHHHHHHhc--cCCC-CCc
Q 037574 237 DEIRVAKAILESLK---GSVS-SQVEMETVLQYINEFVQ--GKKVLLVLDDVWWNA--CPRYWEQLMYSL--KSGS-EGS 305 (961)
Q Consensus 237 ~~~~~~~~il~~l~---~~~~-~~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~--~~~~~~~l~~~l--~~~~-~gs 305 (961)
+...++..|+.++. ...+ ...+.++....+.+.+. +++++||||+++.-. ..+....+.... .... ...
T Consensus 87 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v 166 (365)
T TIGR02928 87 TLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKV 166 (365)
T ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeE
Confidence 88899999999984 2221 22344555566666653 568899999996211 111122222221 1111 223
Q ss_pred EEEEecCCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCC-CCCCCccchHHHHHHHHHhcCCchHHH
Q 037574 306 RILVTRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDG-RSSDDREKFEPIGRLVVGKCKGLPFAV 384 (961)
Q Consensus 306 ~ilvTtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~~~l~~~~~~I~~~c~G~PLai 384 (961)
.+|.+|........+... . ........+.+.+.+.++..+++..++... ....-.++..+....++....|.|-.+
T Consensus 167 ~lI~i~n~~~~~~~l~~~-~--~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~a 243 (365)
T TIGR02928 167 GVIGISNDLKFRENLDPR-V--KSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKA 243 (365)
T ss_pred EEEEEECCcchHhhcCHH-H--hccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHH
Confidence 345555444322211110 0 001112568899999999999998876311 111111222334445677777888433
Q ss_pred -HHHHhhc----cC---CCCHHHHHHHhhhhhcccchhhhhccCCCCcchhhhHhhhcCCChHHHHHhhHhccC--CCCc
Q 037574 385 -KILGSLL----RF---KTSIEEWQSVLDSEIWNLDSKICKRAGVGDEYFSPLLLSYYDLSPALKKCFLYCSIF--PKNY 454 (961)
Q Consensus 385 -~~~~~~l----~~---~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~a~f--p~~~ 454 (961)
.++-.+. .. .-+.++.+.+.+... .....-++..||.+.+..+..++.. ..+.
T Consensus 244 l~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~-----------------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~ 306 (365)
T TIGR02928 244 IDLLRVAGEIAEREGAERVTEDHVEKAQEKIE-----------------KDRLLELIRGLPTHSKLVLLAIANLAANDED 306 (365)
T ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCC
Confidence 3322211 11 123344443333210 1223345678999888766655421 1334
Q ss_pred ccChHHHHHHHHH-cCcccccccccHHHHHHHHHHHHHhCCCCcccc
Q 037574 455 EIEKDRLIKLWMA-QGYLKLLESEDMEVIGEEYFANLASRSLFQDFQ 500 (961)
Q Consensus 455 ~i~~~~Li~~W~a-~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~ 500 (961)
.+...++...+-. ...+. .. ........++++.|...|++....
T Consensus 307 ~~~~~~~~~~y~~~~~~~~-~~-~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 307 PFRTGEVYEVYKEVCEDIG-VD-PLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred CccHHHHHHHHHHHHHhcC-CC-CCcHHHHHHHHHHHHhcCCeEEEE
Confidence 4666666663321 11111 01 123456778999999999998754
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.13 E-value=2.2e-10 Score=134.83 Aligned_cols=115 Identities=21% Similarity=0.234 Sum_probs=81.3
Q ss_pred CCCcCceEEeeecCccccccccccccCceEEEEeCCCCCCcCCCCCCCCccceeeeccccCceEeCccccccCCCCCCCc
Q 037574 788 PSNLESMEMFYYRGESISLMMIMLSNKLRSLTLDRCVNLKQLPGLGGLPSLESLTLRNMKRIEKVGNEFLLTDRTSSTGT 867 (961)
Q Consensus 788 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~ 867 (961)
+.+|+.|++++|....++. ...+|+.|++++| .+..+|.+ .++|+.|++++ +.++.+|.
T Consensus 341 p~~Lq~LdLS~N~Ls~LP~----lp~~L~~L~Ls~N-~L~~LP~l--~~~L~~LdLs~-N~Lt~LP~------------- 399 (788)
T PRK15387 341 PSGLQELSVSDNQLASLPT----LPSELYKLWAYNN-RLTSLPAL--PSGLKELIVSG-NRLTSLPV------------- 399 (788)
T ss_pred ccccceEecCCCccCCCCC----CCcccceehhhcc-ccccCccc--ccccceEEecC-CcccCCCC-------------
Confidence 3589999999887766532 2467888999887 45667754 36799999987 44554432
Q ss_pred ccccCcccceeeccccccccccccccccCcccccccccceecccccccCcCCCCCCC-CCCCCeEEEcccc
Q 037574 868 AVSAFPKLKSLVFLKMKAWREWKYKTKRGKHYKIMPCLCSLTIGYCNELEMLPAEHF-PDTLKDLKIISCS 937 (961)
Q Consensus 868 ~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~l-~~sL~~L~i~~c~ 937 (961)
.+++|+.|+++++ .+..+.. .+.+|+.|++++ ++++.+|.... ..+|+.|++++++
T Consensus 400 ---l~s~L~~LdLS~N-~LssIP~---------l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 400 ---LPSELKELMVSGN-RLTSLPM---------LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred ---cccCCCEEEccCC-cCCCCCc---------chhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 2457899988886 3444332 345789999988 67899986422 3459999999886
No 25
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.11 E-value=3e-10 Score=118.72 Aligned_cols=202 Identities=19% Similarity=0.222 Sum_probs=102.4
Q ss_pred cccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHH
Q 037574 165 FHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKA 244 (961)
Q Consensus 165 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 244 (961)
|+||+.+++.|.+++.. +..+.+.|+|+.|+|||+|++.+.+. .+..-..++|+........ .....
T Consensus 1 F~gR~~el~~l~~~l~~----------~~~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~~~~-~~~~~ 67 (234)
T PF01637_consen 1 FFGREKELEKLKELLES----------GPSQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEESNE-SSLRS 67 (234)
T ss_dssp S-S-HHHHHHHHHCHHH------------SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTBSHH-HHHHH
T ss_pred CCCHHHHHHHHHHHHHh----------hcCcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccchhh-hHHHH
Confidence 78999999999999875 34578999999999999999999983 3221113445544333322 22222
Q ss_pred H----------HHHh----cCCCC------CcccHHHHHHHHHHHh--cCCceEEEeecccCCC-----ChhhHHHHHHh
Q 037574 245 I----------LESL----KGSVS------SQVEMETVLQYINEFV--QGKKVLLVLDDVWWNA-----CPRYWEQLMYS 297 (961)
Q Consensus 245 i----------l~~l----~~~~~------~~~~~~~~~~~l~~~l--~~kr~LlVlDdvw~~~-----~~~~~~~l~~~ 297 (961)
+ ...+ ..... ...........+.+.+ .+++++||+||+..-. .......+...
T Consensus 68 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~ 147 (234)
T PF01637_consen 68 FIEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSL 147 (234)
T ss_dssp HHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHH
Confidence 2 1111 11110 1112222233333333 2456999999995222 12223334444
Q ss_pred ccC---CCCCcEEEEecCCCccccc-ccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHH
Q 037574 298 LKS---GSEGSRILVTRRGEKNGTN-MTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLV 373 (961)
Q Consensus 298 l~~---~~~gs~ilvTtR~~~v~~~-~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I 373 (961)
+.. ..+.+.|+++|. ..+... .... .........+.+++|+.+++++++...+-.. ..- +.-.+..++|
T Consensus 148 ~~~~~~~~~~~~v~~~S~-~~~~~~~~~~~---~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~--~~~~~~~~~i 220 (234)
T PF01637_consen 148 LDSLLSQQNVSIVITGSS-DSLMEEFLDDK---SPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL--PFSDEDIEEI 220 (234)
T ss_dssp HHH----TTEEEEEEESS-HHHHHHTT-TT---STTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHH
T ss_pred HhhccccCCceEEEECCc-hHHHHHhhccc---CccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc--cCCHHHHHHH
Confidence 433 334444444444 322221 1110 0011222559999999999999999975432 101 1123456899
Q ss_pred HHhcCCchHHHHH
Q 037574 374 VGKCKGLPFAVKI 386 (961)
Q Consensus 374 ~~~c~G~PLai~~ 386 (961)
+..+||+|..|..
T Consensus 221 ~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 221 YSLTGGNPRYLQE 233 (234)
T ss_dssp HHHHTT-HHHHHH
T ss_pred HHHhCCCHHHHhc
Confidence 9999999998764
No 26
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.09 E-value=2.6e-10 Score=135.24 Aligned_cols=124 Identities=19% Similarity=0.328 Sum_probs=85.3
Q ss_pred CccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcCCC
Q 037574 549 KFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRLI 628 (961)
Q Consensus 549 ~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~ 628 (961)
+...+.+..+.+ ..+|..+ .++|+.|++.+|. +. . +|..+ +.+|++|+|++| . +..+|..+. .
T Consensus 179 ~~~~L~L~~~~L-tsLP~~I--p~~L~~L~Ls~N~--Lt-s-LP~~l--~~nL~~L~Ls~N-----~-LtsLP~~l~--~ 241 (754)
T PRK15370 179 NKTELRLKILGL-TTIPACI--PEQITTLILDNNE--LK-S-LPENL--QGNIKTLYANSN-----Q-LTSIPATLP--D 241 (754)
T ss_pred CceEEEeCCCCc-CcCCccc--ccCCcEEEecCCC--CC-c-CChhh--ccCCCEEECCCC-----c-cccCChhhh--c
Confidence 345667766665 3455433 2578888888775 32 2 23222 257888888887 3 677777654 3
Q ss_pred CcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcccccCCcCC
Q 037574 629 HLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLSYMPKGI 695 (961)
Q Consensus 629 ~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~~~p~~i 695 (961)
+|+.|+|++|. +..+|..+. .+|++|++++|. +..+|..+. .+|++|++++|++..+|..+
T Consensus 242 ~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l 302 (754)
T PRK15370 242 TIQEMELSINR-ITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNSIRTLPAHL 302 (754)
T ss_pred cccEEECcCCc-cCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCccccCcccc
Confidence 78888888888 788887664 578888888765 777887654 47888888888887777544
No 27
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.08 E-value=9.3e-10 Score=120.34 Aligned_cols=267 Identities=17% Similarity=0.156 Sum_probs=145.2
Q ss_pred CCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHH
Q 037574 162 PLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRV 241 (961)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 241 (961)
-.+|+|++..++.+..++....... .....+.|+|++|+||||||+.+++. ....+ .++..+ .......
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~-----~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~~-~~~~~~~ 92 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRG-----EALDHVLLYGPPGLGKTTLANIIANE--MGVNI---RITSGP-ALEKPGD 92 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcC-----CCCCcEEEECCCCccHHHHHHHHHHH--hCCCe---EEEecc-cccChHH
Confidence 3469999999999988776421110 34567889999999999999999984 33222 112211 1111122
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccC-------------------CC
Q 037574 242 AKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKS-------------------GS 302 (961)
Q Consensus 242 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~-------------------~~ 302 (961)
+..++..+ ++.-+|++||+. .-.....+.+...+.. ..
T Consensus 93 l~~~l~~l----------------------~~~~vl~IDEi~-~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~ 149 (328)
T PRK00080 93 LAAILTNL----------------------EEGDVLFIDEIH-RLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLP 149 (328)
T ss_pred HHHHHHhc----------------------ccCCEEEEecHh-hcchHHHHHHHHHHHhcceeeeeccCccccceeecCC
Confidence 22222222 123455556553 1111111112111110 11
Q ss_pred CCcEEEEecCCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchH
Q 037574 303 EGSRILVTRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPF 382 (961)
Q Consensus 303 ~gs~ilvTtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PL 382 (961)
+.+-|..|++...+...+... -...+.+++++.++..+++.+.+...... --.+.+..|++.|+|.|-
T Consensus 150 ~~~li~at~~~~~l~~~L~sR--------f~~~~~l~~~~~~e~~~il~~~~~~~~~~----~~~~~~~~ia~~~~G~pR 217 (328)
T PRK00080 150 PFTLIGATTRAGLLTSPLRDR--------FGIVQRLEFYTVEELEKIVKRSARILGVE----IDEEGALEIARRSRGTPR 217 (328)
T ss_pred CceEEeecCCcccCCHHHHHh--------cCeeeecCCCCHHHHHHHHHHHHHHcCCC----cCHHHHHHHHHHcCCCch
Confidence 234556666655444332110 01568999999999999999887543322 223468889999999996
Q ss_pred HHHHHHhhccCCCCHHHHHHHhhhhhcccchhhhhccCCCCcchhhhHhhhcCCChHHHHHhh-HhccCCCCcccChHHH
Q 037574 383 AVKILGSLLRFKTSIEEWQSVLDSEIWNLDSKICKRAGVGDEYFSPLLLSYYDLSPALKKCFL-YCSIFPKNYEIEKDRL 461 (961)
Q Consensus 383 ai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl-~~a~fp~~~~i~~~~L 461 (961)
.+..+...+ ..|...... ...... .-......+...|..|++..+..+. ....|+.+ .+..+.+
T Consensus 218 ~a~~~l~~~------~~~a~~~~~--~~I~~~------~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~ 282 (328)
T PRK00080 218 IANRLLRRV------RDFAQVKGD--GVITKE------IADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTL 282 (328)
T ss_pred HHHHHHHHH------HHHHHHcCC--CCCCHH------HHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHH
Confidence 544444322 122222110 001000 0112334456667788888777775 66777766 4555555
Q ss_pred HHHHHHcCcccccccccHHHHHHHHHH-HHHhCCCCcccc
Q 037574 462 IKLWMAQGYLKLLESEDMEVIGEEYFA-NLASRSLFQDFQ 500 (961)
Q Consensus 462 i~~W~a~g~i~~~~~~~~~~~~~~~~~-~L~~~~ll~~~~ 500 (961)
.... | ...+.+++.++ .|++.+|++...
T Consensus 283 a~~l---g--------~~~~~~~~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 283 AAAL---G--------EERDTIEDVYEPYLIQQGFIQRTP 311 (328)
T ss_pred HHHH---C--------CCcchHHHHhhHHHHHcCCcccCC
Confidence 3332 1 12233455566 899999997544
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.04 E-value=5.4e-10 Score=132.58 Aligned_cols=247 Identities=18% Similarity=0.258 Sum_probs=149.5
Q ss_pred CccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcccCCcchhccC
Q 037574 573 KLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKKLPKTLCELY 652 (961)
Q Consensus 573 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~ 652 (961)
+...|.+.+.. +. . +|..+ .+.|+.|+|++|. +..+|..+. .+|++|++++|. ++.+|..+. .
T Consensus 179 ~~~~L~L~~~~--Lt-s-LP~~I--p~~L~~L~Ls~N~------LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~ 241 (754)
T PRK15370 179 NKTELRLKILG--LT-T-IPACI--PEQITTLILDNNE------LKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--D 241 (754)
T ss_pred CceEEEeCCCC--cC-c-CCccc--ccCCcEEEecCCC------CCcCChhhc--cCCCEEECCCCc-cccCChhhh--c
Confidence 45667777654 22 2 23322 2579999999994 888888765 589999999998 999998664 5
Q ss_pred CCcEeecCCCCCCcccccccccCCCCcEEEeCCcccccCCcCCCCCCCCCcCCceEecCCCCCCCCCChhhhhcccccCC
Q 037574 653 NLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLSYMPKGIERWSCLRTLSEFIVSGGNDDKKASKLECLKSLNHLQG 732 (961)
Q Consensus 653 ~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~ 732 (961)
+|+.|++++|. +..+|..+. .+|+.|++++|++..+|..+. .+|+.|. ++.+.+...+..+. ..|..|.
T Consensus 242 ~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~---Ls~N~Lt~LP~~lp--~sL~~L~- 310 (754)
T PRK15370 242 TIQEMELSINR-ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLS---VYDNSIRTLPAHLP--SGITHLN- 310 (754)
T ss_pred cccEEECcCCc-cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEE---CCCCccccCcccch--hhHHHHH-
Confidence 89999999988 889998764 589999999999999987664 3566654 33433322222111 1222221
Q ss_pred ceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHHHHhcCCCCCCcCceEEeeecCccccccccccc
Q 037574 733 SLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAVVEGLELPSNLESMEMFYYRGESISLMMIMLS 812 (961)
Q Consensus 733 ~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 812 (961)
+. .+... .++..+ .++|+.|.++.|.... +...+ +++|+.|++++|....++. ...
T Consensus 311 ---Ls---~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~----------LP~~l--~~sL~~L~Ls~N~L~~LP~---~lp 366 (754)
T PRK15370 311 ---VQ---SNSLT-ALPETL--PPGLKTLEAGENALTS----------LPASL--PPELQVLDVSKNQITVLPE---TLP 366 (754)
T ss_pred ---hc---CCccc-cCCccc--cccceeccccCCcccc----------CChhh--cCcccEEECCCCCCCcCCh---hhc
Confidence 11 11000 011111 2467777777765421 11122 3578888888776654421 123
Q ss_pred cCceEEEEeCCCCCCcCCCCCCCCccceeeeccccCceEeCccccccCCCCCCCcccccCcccceeecccc
Q 037574 813 NKLRSLTLDRCVNLKQLPGLGGLPSLESLTLRNMKRIEKVGNEFLLTDRTSSTGTAVSAFPKLKSLVFLKM 883 (961)
Q Consensus 813 ~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~ 883 (961)
++|+.|+|++| .+..+|.- -.++|+.|++++ +++..+|..+... ...+|++..|.+.+.
T Consensus 367 ~~L~~LdLs~N-~Lt~LP~~-l~~sL~~LdLs~-N~L~~LP~sl~~~---------~~~~~~l~~L~L~~N 425 (754)
T PRK15370 367 PTITTLDVSRN-ALTNLPEN-LPAALQIMQASR-NNLVRLPESLPHF---------RGEGPQPTRIIVEYN 425 (754)
T ss_pred CCcCEEECCCC-cCCCCCHh-HHHHHHHHhhcc-CCcccCchhHHHH---------hhcCCCccEEEeeCC
Confidence 57888888887 34455531 124677888877 4566665432111 123466677766554
No 29
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.03 E-value=1.8e-09 Score=117.48 Aligned_cols=279 Identities=14% Similarity=0.096 Sum_probs=143.8
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVA 242 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 242 (961)
.+|+|++..++++..++....... .....+.++|++|+|||+||+.+++. ....| ..+..+..... ..+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~-----~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~~-~~l 72 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQ-----EALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEKP-GDL 72 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcC-----CCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcCc-hhH
Confidence 369999999999988886432111 34556889999999999999999883 32222 11221111111 112
Q ss_pred HHHHHHhcCCC----C--CcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCcc
Q 037574 243 KAILESLKGSV----S--SQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKN 316 (961)
Q Consensus 243 ~~il~~l~~~~----~--~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v 316 (961)
...+..+.... . +..+ ....+.+...+.+.+..+|+|+.+ ....|. .. ..+.+-|..||+...+
T Consensus 73 ~~~l~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~---~~~~~~---~~---~~~~~li~~t~~~~~l 142 (305)
T TIGR00635 73 AAILTNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGP---SARSVR---LD---LPPFTLVGATTRAGML 142 (305)
T ss_pred HHHHHhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCc---ccccee---ec---CCCeEEEEecCCcccc
Confidence 22222222110 0 0000 111222333333444444444442 111110 01 1124556667776554
Q ss_pred cccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHHHhhccCCCC
Q 037574 317 GTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKILGSLLRFKTS 396 (961)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~~~~l~~~~~ 396 (961)
...+... -...+.+++++.++..+++.+.+...... --.+....|++.|+|.|-.+..++..+
T Consensus 143 ~~~l~sR--------~~~~~~l~~l~~~e~~~il~~~~~~~~~~----~~~~al~~ia~~~~G~pR~~~~ll~~~----- 205 (305)
T TIGR00635 143 TSPLRDR--------FGIILRLEFYTVEELAEIVSRSAGLLNVE----IEPEAALEIARRSRGTPRIANRLLRRV----- 205 (305)
T ss_pred CHHHHhh--------cceEEEeCCCCHHHHHHHHHHHHHHhCCC----cCHHHHHHHHHHhCCCcchHHHHHHHH-----
Confidence 4332110 01567899999999999999887533221 223467789999999996655444422
Q ss_pred HHHHHHHhhhhhcccchhhhhccCCCCcchhhhHhhhcCCChHHHHHhh-HhccCCCCcccChHHHHHHHHHcCcccccc
Q 037574 397 IEEWQSVLDSEIWNLDSKICKRAGVGDEYFSPLLLSYYDLSPALKKCFL-YCSIFPKNYEIEKDRLIKLWMAQGYLKLLE 475 (961)
Q Consensus 397 ~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl-~~a~fp~~~~i~~~~Li~~W~a~g~i~~~~ 475 (961)
|.............. .-......+...|..++++.+..+. .++.++.+ .+..+.+.... |.
T Consensus 206 ---~~~a~~~~~~~it~~------~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~----- 267 (305)
T TIGR00635 206 ---RDFAQVRGQKIINRD------IALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE----- 267 (305)
T ss_pred ---HHHHHHcCCCCcCHH------HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC-----
Confidence 211100000000000 0011222245667888888777666 55666544 44444433322 11
Q ss_pred cccHHHHHHHHHH-HHHhCCCCcccc
Q 037574 476 SEDMEVIGEEYFA-NLASRSLFQDFQ 500 (961)
Q Consensus 476 ~~~~~~~~~~~~~-~L~~~~ll~~~~ 500 (961)
....++..++ .|++++|++...
T Consensus 268 ---~~~~~~~~~e~~Li~~~li~~~~ 290 (305)
T TIGR00635 268 ---DADTIEDVYEPYLLQIGFLQRTP 290 (305)
T ss_pred ---CcchHHHhhhHHHHHcCCcccCC
Confidence 2234566678 699999997443
No 30
>PF05729 NACHT: NACHT domain
Probab=98.93 E-value=6.5e-09 Score=102.05 Aligned_cols=147 Identities=21% Similarity=0.301 Sum_probs=88.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhCChhhhcc----CceeEEEEeCCCCCHH---HHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 037574 195 PVIWILGKEGIGKTALARQVFDDSDVKAN----FDKRIWVSASCPRDEI---RVAKAILESLKGSVSSQVEMETVLQYIN 267 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~---~~~~~il~~l~~~~~~~~~~~~~~~~l~ 267 (961)
+++.|+|.+|+||||+++.++.+-..... +...+|+......... .+...|..+..... ..... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHH---HHH
Confidence 57999999999999999999875322222 4456677665443322 33333333332211 11111 222
Q ss_pred HH-hcCCceEEEeecccCCCChh------hHHH-HHHhccC-CCCCcEEEEecCCCcccccccccccccCCCCCcceeec
Q 037574 268 EF-VQGKKVLLVLDDVWWNACPR------YWEQ-LMYSLKS-GSEGSRILVTRRGEKNGTNMTEIGLGEKDGTNMTEIGL 338 (961)
Q Consensus 268 ~~-l~~kr~LlVlDdvw~~~~~~------~~~~-l~~~l~~-~~~gs~ilvTtR~~~v~~~~~~~~~~~~~~~~~~~~~l 338 (961)
.. ...+++++|+|++.+-.... .+.. +...++. ...+++++||+|........... .....+.+
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~-------~~~~~~~l 147 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRL-------KQAQILEL 147 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhc-------CCCcEEEE
Confidence 22 25789999999995322211 1222 3334443 35689999999988764322211 11167999
Q ss_pred CCCChHHHHHHHHHHH
Q 037574 339 GELSAKECRSLFRQIA 354 (961)
Q Consensus 339 ~~L~~~~~~~Lf~~~~ 354 (961)
.+|++++..+++.+..
T Consensus 148 ~~~~~~~~~~~~~~~f 163 (166)
T PF05729_consen 148 EPFSEEDIKQYLRKYF 163 (166)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998763
No 31
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.90 E-value=2.8e-08 Score=120.55 Aligned_cols=318 Identities=18% Similarity=0.173 Sum_probs=186.5
Q ss_pred cccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeC---CCC---CH
Q 037574 165 FHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSAS---CPR---DE 238 (961)
Q Consensus 165 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s---~~~---~~ 238 (961)
++||+.+.+.+...+..... +...++.|.|..|||||+|++.|.. .+.+.+...+--.+. ... ..
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~-------g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~l 72 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSK-------GRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPL 72 (849)
T ss_pred CCchHhHHHHHHHHHHHHhC-------CCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHH
Confidence 78999999999998887554 5567999999999999999999988 444442221111111 111 23
Q ss_pred HHHHHHHHHHhcCCC---------------------------------C---C-----cccHH-----HHHHHHHHHh-c
Q 037574 239 IRVAKAILESLKGSV---------------------------------S---S-----QVEME-----TVLQYINEFV-Q 271 (961)
Q Consensus 239 ~~~~~~il~~l~~~~---------------------------------~---~-----~~~~~-----~~~~~l~~~l-~ 271 (961)
...+++++.++.... . . ....+ .....+.... +
T Consensus 73 vq~~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~ 152 (849)
T COG3899 73 VQAFRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAE 152 (849)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhc
Confidence 345555555541110 0 0 00000 1223333333 3
Q ss_pred CCceEEEeecccCCCChhhHHHHHHhccCCCC----CcEEEEecCCCcccccccccccccCCCCCcceeecCCCChHHHH
Q 037574 272 GKKVLLVLDDVWWNACPRYWEQLMYSLKSGSE----GSRILVTRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECR 347 (961)
Q Consensus 272 ~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~----gs~ilvTtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~ 347 (961)
.++.++|+||+. +.|....+-+......... ...|..+........ .......+...+.|.||+..+..
T Consensus 153 ~~plVi~leDlh-WaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~------~~~~~~~~i~~I~L~PL~~~d~~ 225 (849)
T COG3899 153 EHPLVIVLEDLH-WADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLG------EILKSATNITTITLAPLSRADTN 225 (849)
T ss_pred cCCeEEEEeccc-ccChhHHHHHHHHHHhcchhhhhccccccCCCccchhh------HHhhcCCceeEEecCcCchhhHH
Confidence 569999999996 4555565555444433221 112322222221111 11122344588999999999999
Q ss_pred HHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHHHhhccCC------CCHHHHHHHhhhhhcccchhhhhccCC
Q 037574 348 SLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKILGSLLRFK------TSIEEWQSVLDSEIWNLDSKICKRAGV 421 (961)
Q Consensus 348 ~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~~~~l~~~------~~~~~w~~~l~~~~~~~~~~~~~~~~~ 421 (961)
.+......... ....+..+.|+++..|+||.+..+-..+..+ .+...|..-..+. ...+.
T Consensus 226 ~lV~~~l~~~~-----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i---------~~~~~ 291 (849)
T COG3899 226 QLVAATLGCTK-----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL---------GILAT 291 (849)
T ss_pred HHHHHHhCCcc-----cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc---------CCchh
Confidence 99988763212 2334568889999999999999998887653 2222332211110 00112
Q ss_pred CCcchhhhHhhhcCCChHHHHHhhHhccCCCCcccChHHHHHHHHHcCcccccccccHHHHHHHHHHHHHhCCCCccccc
Q 037574 422 GDEYFSPLLLSYYDLSPALKKCFLYCSIFPKNYEIEKDRLIKLWMAQGYLKLLESEDMEVIGEEYFANLASRSLFQDFQK 501 (961)
Q Consensus 422 ~~~~~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~ 501 (961)
.+.+...+..-.+.||...|..+-..|++.. .|+.+.|...|.. ....++....+.|....++...+.
T Consensus 292 ~~~vv~~l~~rl~kL~~~t~~Vl~~AA~iG~--~F~l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~~~~~ 359 (849)
T COG3899 292 TDAVVEFLAARLQKLPGTTREVLKAAACIGN--RFDLDTLAALAED----------SPALEAAALLDALQEGLILPLSET 359 (849)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCc--cCCHHHHHHHHhh----------chHHHHHHHHHHhHhhceeccccc
Confidence 2335556888899999999999999999964 4566677666632 345566666676666655543322
Q ss_pred CCCCCeEEEE---EeCchHHHHHHHh
Q 037574 502 SEFDGRIIRC---QMHPIVHEFAHFL 524 (961)
Q Consensus 502 ~~~~~~~~~~---~~Hdlv~~~a~~~ 524 (961)
...+...... -.||.+++.|-..
T Consensus 360 yr~~~~~~~~~Y~F~H~~vqqaaY~~ 385 (849)
T COG3899 360 YRFGSNVDIATYKFLHDRVQQAAYNL 385 (849)
T ss_pred cccccccchhhHHhhHHHHHHHHhcc
Confidence 2222211122 4588888877443
No 32
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.90 E-value=3.8e-10 Score=116.63 Aligned_cols=109 Identities=28% Similarity=0.347 Sum_probs=62.2
Q ss_pred ccchhhhccCCcccEEEccCCChhhhhhhccc-chhhcCCCCcceEeccCCCCcccCC-cchhccCCCcEeecCCCCCCc
Q 037574 589 IVLSKVFDQLTCLRTLELSNHDNVLCKVIKKV-PKQIKRLIHLRYLNLSKNNKIKKLP-KTLCELYNLQTLELSWCSNLR 666 (961)
Q Consensus 589 ~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~ 666 (961)
.+++..|+.+++||.|||+.| . |+.+ |+.|..+..|-.|-+.+++.|+.+| ..|++|..||.|.+.-|. +.
T Consensus 81 ~iP~~aF~~l~~LRrLdLS~N-----~-Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~-i~ 153 (498)
T KOG4237|consen 81 SIPPGAFKTLHRLRRLDLSKN-----N-ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANH-IN 153 (498)
T ss_pred cCChhhccchhhhceeccccc-----c-hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhh-hc
Confidence 445556666666666666666 3 4333 6666666666665555533366666 346666666666666555 33
Q ss_pred ccc-cccccCCCCcEEEeCCcccccCCc-CCCCCCCCCcC
Q 037574 667 NLP-QGMGKLINLRHVVNVGTPLSYMPK-GIERWSCLRTL 704 (961)
Q Consensus 667 ~lP-~~i~~L~~L~~L~l~~~~l~~~p~-~i~~L~~L~~L 704 (961)
-++ ..+..|++|..|.+.+|.+..++. .+..+.+++++
T Consensus 154 Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tl 193 (498)
T KOG4237|consen 154 CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTL 193 (498)
T ss_pred chhHHHHHHhhhcchhcccchhhhhhccccccchhccchH
Confidence 333 345666666666666666665554 24444444443
No 33
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.88 E-value=2.5e-08 Score=104.60 Aligned_cols=178 Identities=19% Similarity=0.232 Sum_probs=108.1
Q ss_pred CCCCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHH
Q 037574 160 IDPLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEI 239 (961)
Q Consensus 160 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 239 (961)
+...+++|....+.++++ . +.+.-..+||++|+||||||+.+.. .....| ..+|-..+-.
T Consensus 27 vGQ~HLlg~~~~lrr~v~---~----------~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gv 86 (436)
T COG2256 27 VGQEHLLGEGKPLRRAVE---A----------GHLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGV 86 (436)
T ss_pred cChHhhhCCCchHHHHHh---c----------CCCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccH
Confidence 334455666665555543 2 5677888999999999999999998 444444 4444443333
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEE--ecCCCccc
Q 037574 240 RVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILV--TRRGEKNG 317 (961)
Q Consensus 240 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~v~ 317 (961)
+-++++++.. -.....|++.+|++|.|. ..+..+-+. +||.-.+|.-|+| ||-++.-.
T Consensus 87 kdlr~i~e~a----------------~~~~~~gr~tiLflDEIH-RfnK~QQD~---lLp~vE~G~iilIGATTENPsF~ 146 (436)
T COG2256 87 KDLREIIEEA----------------RKNRLLGRRTILFLDEIH-RFNKAQQDA---LLPHVENGTIILIGATTENPSFE 146 (436)
T ss_pred HHHHHHHHHH----------------HHHHhcCCceEEEEehhh-hcChhhhhh---hhhhhcCCeEEEEeccCCCCCee
Confidence 3334443332 122335899999999996 444443333 4555566877777 66666422
Q ss_pred ccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCC-CCC-Cccch-HHHHHHHHHhcCCchHHH
Q 037574 318 TNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGR-SSD-DREKF-EPIGRLVVGKCKGLPFAV 384 (961)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~-~~~~l-~~~~~~I~~~c~G~PLai 384 (961)
-.-.- -++..++.+++|+.++-.+++++.+.... .-. ....+ +++...|++.++|---++
T Consensus 147 ln~AL-------lSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 147 LNPAL-------LSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred ecHHH-------hhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 11110 12338999999999999999998432211 111 11112 346677888888876433
No 34
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.84 E-value=4.8e-07 Score=104.37 Aligned_cols=311 Identities=11% Similarity=0.088 Sum_probs=165.4
Q ss_pred CCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhh---hccCc--eeEEEEeCCCC
Q 037574 162 PLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDV---KANFD--KRIWVSASCPR 236 (961)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~F~--~~~wv~~s~~~ 236 (961)
|..+.||++++++|...|...-.+. ....++.|+|++|.|||+.++.|.+.... ..... .+++|++....
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgs-----gpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Ls 828 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQS-----GSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVV 828 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcC-----CCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccC
Confidence 4568899999999999887643211 33467889999999999999999874221 11222 35677777777
Q ss_pred CHHHHHHHHHHHhcCCCC-CcccHHHHHHHHHHHhc---CCceEEEeecccCCCChhhHHHHHHhccC-CCCCcEEEE--
Q 037574 237 DEIRVAKAILESLKGSVS-SQVEMETVLQYINEFVQ---GKKVLLVLDDVWWNACPRYWEQLMYSLKS-GSEGSRILV-- 309 (961)
Q Consensus 237 ~~~~~~~~il~~l~~~~~-~~~~~~~~~~~l~~~l~---~kr~LlVlDdvw~~~~~~~~~~l~~~l~~-~~~gs~ilv-- 309 (961)
+...++..|..++....+ ......+....+...+. +...+||||++. ......-+.|...+.. ...+++|+|
T Consensus 829 tp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID-~L~kK~QDVLYnLFR~~~~s~SKLiLIG 907 (1164)
T PTZ00112 829 HPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEID-YLITKTQKVLFTLFDWPTKINSKLVLIA 907 (1164)
T ss_pred CHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHh-hhCccHHHHHHHHHHHhhccCCeEEEEE
Confidence 888999999999954432 22333444555555442 234589999995 1111111223323321 224556544
Q ss_pred ecCCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHHHh
Q 037574 310 TRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKILGS 389 (961)
Q Consensus 310 TtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~~~ 389 (961)
+|...+....+... +. .......+...|.+.++-.+++..++-.....-++..++-+|+.++...|-.=.|+.++-.
T Consensus 908 ISNdlDLperLdPR-LR--SRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRr 984 (1164)
T PTZ00112 908 ISNTMDLPERLIPR-CR--SRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRK 984 (1164)
T ss_pred ecCchhcchhhhhh-hh--hccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHH
Confidence 34332222211110 00 0001134777999999999999998754322233344555666555555555566666555
Q ss_pred hccCC----CCHHHHHHHhhhhhcccchhhhhccCCCCcchhhhHhhhcCCChHHHHHhhHhccC-C--CCcccChHHHH
Q 037574 390 LLRFK----TSIEEWQSVLDSEIWNLDSKICKRAGVGDEYFSPLLLSYYDLSPALKKCFLYCSIF-P--KNYEIEKDRLI 462 (961)
Q Consensus 390 ~l~~~----~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~a~f-p--~~~~i~~~~Li 462 (961)
+...+ -+.++-+.+.+.. ....+.-....||.+.|-.++.+... - ....++...+.
T Consensus 985 AgEikegskVT~eHVrkAleei-----------------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVY 1047 (1164)
T PTZ00112 985 AFENKRGQKIVPRDITEATNQL-----------------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVL 1047 (1164)
T ss_pred HHhhcCCCccCHHHHHHHHHHH-----------------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHH
Confidence 44321 1122222222111 01112333467888877655533322 1 12235555444
Q ss_pred HHH--HHcCcccccccccHHHHHHHHHHHHHhCCCCcc
Q 037574 463 KLW--MAQGYLKLLESEDMEVIGEEYFANLASRSLFQD 498 (961)
Q Consensus 463 ~~W--~a~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~ 498 (961)
... +++..-...+..........|+.+|...|+|..
T Consensus 1048 erYk~Lce~~Gk~iGv~plTqRV~d~L~eL~~LGIIl~ 1085 (1164)
T PTZ00112 1048 NRYKVLVETSGKYIGMCSNNELFKIMLDKLVKMGILLI 1085 (1164)
T ss_pred HHHHHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCeEEe
Confidence 332 122000000111111156778888888888755
No 35
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.83 E-value=7.1e-10 Score=122.00 Aligned_cols=122 Identities=21% Similarity=0.129 Sum_probs=65.5
Q ss_pred cccCCCCccEEEeccCCCcc-ccccchhhhccCCcccEEEccCCChhh-hhhhcccchhhcCCCCcceEeccCCCCcccC
Q 037574 567 SVYNQKKLRSLGVEHGGGFM-NGIVLSKVFDQLTCLRTLELSNHDNVL-CKVIKKVPKQIKRLIHLRYLNLSKNNKIKKL 644 (961)
Q Consensus 567 ~~~~~~~Lr~L~l~~~~~~~-~~~~~~~~~~~l~~Lr~L~L~~~~~~~-~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~l 644 (961)
.+..+.+|+.|.+.++.-.. ....++..+..++.|+.|+++++.... ...+..++..+..+++|++|+|++|......
T Consensus 18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 34455557777777665100 001133345566667777777663100 0112334455666777777777777622234
Q ss_pred CcchhccCC---CcEeecCCCCCCc-----ccccccccC-CCCcEEEeCCcccc
Q 037574 645 PKTLCELYN---LQTLELSWCSNLR-----NLPQGMGKL-INLRHVVNVGTPLS 689 (961)
Q Consensus 645 p~~i~~L~~---L~~L~l~~~~~l~-----~lP~~i~~L-~~L~~L~l~~~~l~ 689 (961)
+..+..+.+ |+.|++++|. +. .++..+..+ ++|+.|++++|.+.
T Consensus 98 ~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 98 CGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred HHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 444554544 7777777765 33 223344555 67777777666544
No 36
>PRK06893 DNA replication initiation factor; Validated
Probab=98.79 E-value=8.5e-08 Score=98.78 Aligned_cols=155 Identities=15% Similarity=0.165 Sum_probs=93.5
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCC
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGK 273 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 273 (961)
.+.+.|+|++|+|||+|++.+++. .......+.|++++.. ..... .+.+.+. +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~---~~~~~---------------------~~~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKS---QYFSP---------------------AVLENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHh---hhhhH---------------------HHHhhcc-c
Confidence 467899999999999999999984 3333345667775311 00000 1111122 2
Q ss_pred ceEEEeecccCCCChhhHHH-HHHhccCC-CCCcEEEEecCCC----------cccccccccccccCCCCCcceeecCCC
Q 037574 274 KVLLVLDDVWWNACPRYWEQ-LMYSLKSG-SEGSRILVTRRGE----------KNGTNMTEIGLGEKDGTNMTEIGLGEL 341 (961)
Q Consensus 274 r~LlVlDdvw~~~~~~~~~~-l~~~l~~~-~~gs~ilvTtR~~----------~v~~~~~~~~~~~~~~~~~~~~~l~~L 341 (961)
.-+||+||+|.......|+. +...+... ..|..+||+|.+. .+...+... ..++++++
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g----------~~~~l~~p 161 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWG----------EIYQLNDL 161 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcC----------CeeeCCCC
Confidence 35999999983222345653 44444432 2355665544433 222222222 68899999
Q ss_pred ChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHHHh
Q 037574 342 SAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKILGS 389 (961)
Q Consensus 342 ~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~~~ 389 (961)
++++.++++++.+....-. --.++..-|++.+.|..-++..+-.
T Consensus 162 d~e~~~~iL~~~a~~~~l~----l~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 162 TDEQKIIVLQRNAYQRGIE----LSDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred CHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHhccCCHHHHHHHHH
Confidence 9999999999988643321 2245677888888887765554433
No 37
>PTZ00202 tuzin; Provisional
Probab=98.73 E-value=1.3e-06 Score=93.68 Aligned_cols=175 Identities=13% Similarity=0.117 Sum_probs=110.1
Q ss_pred cccCCCCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCC
Q 037574 157 SEAIDPLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPR 236 (961)
Q Consensus 157 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~ 236 (961)
+.+.+.+.|+||+++...+...|.+.+. ...+++.|+|++|+|||||++.+..... + .+++.-..
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~-------~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~vNpr-- 320 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDT-------AHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVFVDVR-- 320 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCC-------CCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEEECCC--
Confidence 3455677899999999999999976442 2346999999999999999999987322 2 23332222
Q ss_pred CHHHHHHHHHHHhcCCCCCc--ccHHHHHHHHHHHh-c-CCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecC
Q 037574 237 DEIRVAKAILESLKGSVSSQ--VEMETVLQYINEFV-Q-GKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRR 312 (961)
Q Consensus 237 ~~~~~~~~il~~l~~~~~~~--~~~~~~~~~l~~~l-~-~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR 312 (961)
+..++++.++.+|+.+.... .-.+.+.+.+.+.- . |++.+||+-==..++-...+.... .|.....-|+|++-.-
T Consensus 321 g~eElLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evp 399 (550)
T PTZ00202 321 GTEDTLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVP 399 (550)
T ss_pred CHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeeh
Confidence 67999999999999743221 12233444443322 3 677777764221011112333332 3445556788888665
Q ss_pred CCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHH
Q 037574 313 GEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIA 354 (961)
Q Consensus 313 ~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 354 (961)
-+.+....... .+...|.+.+++.++|.++-++..
T Consensus 400 leslt~~~~~l-------prldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 400 LESLTIANTLL-------PRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred HhhcchhcccC-------ccceeEecCCCCHHHHHHHHhhcc
Confidence 44433222221 233788999999999998877653
No 38
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.71 E-value=2.1e-07 Score=105.02 Aligned_cols=179 Identities=17% Similarity=0.200 Sum_probs=105.3
Q ss_pred ccccchHHHHH---HHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHH
Q 037574 164 EFHGRNVEKKN---ILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIR 240 (961)
Q Consensus 164 ~~vGr~~~~~~---l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 240 (961)
+++|++..+.. +..++.. .....+.++|++|+||||||+.+++. ....| +.++.......
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~----------~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~~-----~~l~a~~~~~~ 75 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEA----------GRLSSMILWGPPGTGKTTLARIIAGA--TDAPF-----EALSAVTSGVK 75 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHc----------CCCceEEEECCCCCCHHHHHHHHHHH--hCCCE-----EEEecccccHH
Confidence 57888776555 6666654 44567889999999999999999883 33232 33322211111
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHH-hcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEE--ecCCCccc
Q 037574 241 VAKAILESLKGSVSSQVEMETVLQYINEF-VQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILV--TRRGEKNG 317 (961)
Q Consensus 241 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~v~ 317 (961)
-++.+++. .... ..+++.+|++|++| .......+.+...+.. |..++| ||.+....
T Consensus 76 ~ir~ii~~-----------------~~~~~~~g~~~vL~IDEi~-~l~~~~q~~LL~~le~---~~iilI~att~n~~~~ 134 (413)
T PRK13342 76 DLREVIEE-----------------ARQRRSAGRRTILFIDEIH-RFNKAQQDALLPHVED---GTITLIGATTENPSFE 134 (413)
T ss_pred HHHHHHHH-----------------HHHhhhcCCceEEEEechh-hhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhh
Confidence 22222222 1111 24678899999997 4455556666655543 445555 33333211
Q ss_pred ccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHHH
Q 037574 318 TNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKILG 388 (961)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~~ 388 (961)
-. .. -..+...+.+.+++.++.+.++.+.+....... ..--.+..+.|++.|+|.+..+..+.
T Consensus 135 l~-~a------L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 135 VN-PA------LLSRAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred cc-HH------HhccceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 10 00 012227899999999999999988653211100 02224567788999999997665443
No 39
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.69 E-value=9.5e-10 Score=113.77 Aligned_cols=243 Identities=21% Similarity=0.255 Sum_probs=143.2
Q ss_pred cccEEEccCCChhhhhhhcccch-hhcCCCCcceEeccCCCCccc-CCcchhccCCCcEeecCCCCCCcccccc-cccCC
Q 037574 600 CLRTLELSNHDNVLCKVIKKVPK-QIKRLIHLRYLNLSKNNKIKK-LPKTLCELYNLQTLELSWCSNLRNLPQG-MGKLI 676 (961)
Q Consensus 600 ~Lr~L~L~~~~~~~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~i~~-lp~~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~ 676 (961)
.-..++|+.| . |..+|+ +|+.+++||.||||.|. |.. -|..|..|..|-+|-+.+++.|+.+|.+ +++|.
T Consensus 68 ~tveirLdqN-----~-I~~iP~~aF~~l~~LRrLdLS~N~-Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~ 140 (498)
T KOG4237|consen 68 ETVEIRLDQN-----Q-ISSIPPGAFKTLHRLRRLDLSKNN-ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS 140 (498)
T ss_pred cceEEEeccC-----C-cccCChhhccchhhhceecccccc-hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH
Confidence 3456789988 4 888875 58999999999999999 665 4789999999999999987779999976 78899
Q ss_pred CCcEEEeCCcccccCCcC-CCCCCCCCcCCceEecCCCCCCCCCChhhhhcccccCC---c-eeEcCCCCC-ChhhhHhh
Q 037574 677 NLRHVVNVGTPLSYMPKG-IERWSCLRTLSEFIVSGGNDDKKASKLECLKSLNHLQG---S-LNIKGLGNV-DKDEIFKA 750 (961)
Q Consensus 677 ~L~~L~l~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~---~-L~i~~l~~~-~~~~~~~~ 750 (961)
.|+.|.+.-|.+..++.. +..|++|..|..+......+. ...+..+..++.+.. . .+..++... +.......
T Consensus 141 slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~--~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i 218 (498)
T KOG4237|consen 141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSIC--KGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI 218 (498)
T ss_pred HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhc--cccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence 999999987777777654 667777777766543221110 112333333332210 0 011111110 00000000
Q ss_pred ccccccccCceeEEecCCCCc------------------CCCccchHHHHhcCCCCCCcCceEEeeecCccc--cccccc
Q 037574 751 ELSKREKLLALGISFDRDDEE------------------GRKKEDDEAVVEGLELPSNLESMEMFYYRGESI--SLMMIM 810 (961)
Q Consensus 751 ~l~~~~~L~~L~l~~~~~~~~------------------~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~--~~~~~~ 810 (961)
.++..+......+...+.... .... +....-..+..+++|+.|+++++....+ .|+.
T Consensus 219 etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~-d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe-- 295 (498)
T KOG4237|consen 219 ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFP-DSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE-- 295 (498)
T ss_pred hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCc-CCcChHHHHhhcccceEeccCCCccchhhhhhhc--
Confidence 111111111111111000000 0000 0000111234457889999988887777 5665
Q ss_pred cccCceEEEEeCCCCCCcCC--CCCCCCccceeeeccccCceEeCccc
Q 037574 811 LSNKLRSLTLDRCVNLKQLP--GLGGLPSLESLTLRNMKRIEKVGNEF 856 (961)
Q Consensus 811 ~l~~L~~L~L~~~~~~~~l~--~l~~lp~L~~L~L~~~~~l~~l~~~~ 856 (961)
....++.|+|..| .++.+. .+..+..|+.|+|.+ +.|+.+....
T Consensus 296 ~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~~a 341 (498)
T KOG4237|consen 296 GAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYD-NQITTVAPGA 341 (498)
T ss_pred chhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecC-CeeEEEeccc
Confidence 6778888888887 444444 366788888888888 6677665443
No 40
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.62 E-value=1.4e-07 Score=88.39 Aligned_cols=118 Identities=21% Similarity=0.325 Sum_probs=80.8
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhh---ccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVK---ANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEF 269 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 269 (961)
+.+++.|+|.+|+|||++++.+.++.... ..-..++|+.+....+...+...|+.+++.......+.+++.+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 45789999999999999999999842110 013456799988877999999999999988765555677777888888
Q ss_pred hcCCc-eEEEeecccCCC-ChhhHHHHHHhccCCCCCcEEEEecCC
Q 037574 270 VQGKK-VLLVLDDVWWNA-CPRYWEQLMYSLKSGSEGSRILVTRRG 313 (961)
Q Consensus 270 l~~kr-~LlVlDdvw~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~ 313 (961)
+...+ .+||+|++. .- +...++.+..... ..+.+||+..+.
T Consensus 83 l~~~~~~~lviDe~~-~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEAD-HLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTH-HHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChH-hcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 86554 599999996 23 3344455544444 556677776654
No 41
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.57 E-value=2.4e-06 Score=98.43 Aligned_cols=181 Identities=14% Similarity=0.209 Sum_probs=114.2
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhh-------------------cc
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVK-------------------AN 223 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~ 223 (961)
.+++|.+..++.|..++... .-...+.++|..|+||||+|+.+.+...-. +.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~g---------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~ 86 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGG---------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGR 86 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcC---------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCC
Confidence 36899999999999998753 224566799999999999999887631111 11
Q ss_pred CceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH----hcCCceEEEeecccCCCChhhHHHHHHhcc
Q 037574 224 FDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEF----VQGKKVLLVLDDVWWNACPRYWEQLMYSLK 299 (961)
Q Consensus 224 F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~ 299 (961)
|..+++++.+... ..+++.+.+... ..++.-++|+|++. ..+...+..+...+.
T Consensus 87 h~DviEIDAas~r---------------------gVDdIReLIe~a~~~P~~gr~KVIIIDEah-~LT~~A~NALLKtLE 144 (830)
T PRK07003 87 FVDYVEMDAASNR---------------------GVDEMAALLERAVYAPVDARFKVYMIDEVH-MLTNHAFNAMLKTLE 144 (830)
T ss_pred CceEEEecccccc---------------------cHHHHHHHHHHHHhccccCCceEEEEeChh-hCCHHHHHHHHHHHH
Confidence 1112222222111 122222222211 13456689999997 556677888888887
Q ss_pred CCCCCcEEEEecCCCc-ccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcC
Q 037574 300 SGSEGSRILVTRRGEK-NGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCK 378 (961)
Q Consensus 300 ~~~~gs~ilvTtR~~~-v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~ 378 (961)
......++|+||.+.. +...+. ++...+.+++++.++..+.+.+.+...+.. --.+..+.|++.++
T Consensus 145 EPP~~v~FILaTtd~~KIp~TIr---------SRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~----id~eAL~lIA~~A~ 211 (830)
T PRK07003 145 EPPPHVKFILATTDPQKIPVTVL---------SRCLQFNLKQMPAGHIVSHLERILGEERIA----FEPQALRLLARAAQ 211 (830)
T ss_pred hcCCCeEEEEEECChhhccchhh---------hheEEEecCCcCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcC
Confidence 7666778777776543 322111 223889999999999999998876433221 12345678899999
Q ss_pred CchH-HHHHH
Q 037574 379 GLPF-AVKIL 387 (961)
Q Consensus 379 G~PL-ai~~~ 387 (961)
|..- |+..+
T Consensus 212 GsmRdALsLL 221 (830)
T PRK07003 212 GSMRDALSLT 221 (830)
T ss_pred CCHHHHHHHH
Confidence 8663 55543
No 42
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.57 E-value=3.4e-08 Score=108.57 Aligned_cols=64 Identities=19% Similarity=0.201 Sum_probs=32.5
Q ss_pred ccccCceeEEecCCCCcCCCccchHHHHhcCCCCCCcCceEEeeecCcccc--cc--ccccc-cCceEEEEeCC
Q 037574 755 REKLLALGISFDRDDEEGRKKEDDEAVVEGLELPSNLESMEMFYYRGESIS--LM--MIMLS-NKLRSLTLDRC 823 (961)
Q Consensus 755 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~--~~--~~~~l-~~L~~L~L~~~ 823 (961)
.+.|++|+++.|.... .....+.+.+...++|++++++++...... -+ ..... ++|+.|++..+
T Consensus 249 ~~~L~~L~l~~n~i~~-----~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 249 NISLLTLSLSCNDITD-----DGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred CCCceEEEccCCCCCc-----HHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 3577777777765421 112233344444467777777776654320 00 01123 46666666554
No 43
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=1.5e-06 Score=94.40 Aligned_cols=181 Identities=16% Similarity=0.174 Sum_probs=118.2
Q ss_pred ccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCC----hhhhccCceeEEEEe-CCCCCH
Q 037574 164 EFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDD----SDVKANFDKRIWVSA-SCPRDE 238 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~----~~~~~~F~~~~wv~~-s~~~~~ 238 (961)
+++|.+..++.+..++... .-.+...++|+.|+||||+|+.+++. .....|+|...|... +.....
T Consensus 5 ~i~g~~~~~~~l~~~~~~~---------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v 75 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKN---------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGV 75 (313)
T ss_pred hccCcHHHHHHHHHHHHcC---------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCH
Confidence 5789999999999988653 23467789999999999999999872 112345666556542 222222
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCcccc
Q 037574 239 IRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNGT 318 (961)
Q Consensus 239 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 318 (961)
+. .+++.+.+.... ..+++-++|+|++. ..+...+..+...+.....++.+|++|.+.+..
T Consensus 76 ~~-ir~~~~~~~~~p----------------~~~~~kv~iI~~ad-~m~~~a~naLLK~LEepp~~t~~il~~~~~~~l- 136 (313)
T PRK05564 76 DD-IRNIIEEVNKKP----------------YEGDKKVIIIYNSE-KMTEQAQNAFLKTIEEPPKGVFIILLCENLEQI- 136 (313)
T ss_pred HH-HHHHHHHHhcCc----------------ccCCceEEEEechh-hcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhC-
Confidence 22 233333332111 13456677777774 446778999999999888889998888655422
Q ss_pred cccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHH
Q 037574 319 NMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKIL 387 (961)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~ 387 (961)
..+. ..+...+.+.++++++....+.+...+ . -.+.++.++..++|.|.-+...
T Consensus 137 -l~TI------~SRc~~~~~~~~~~~~~~~~l~~~~~~-~-------~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 137 -LDTI------KSRCQIYKLNRLSKEEIEKFISYKYND-I-------KEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred -cHHH------HhhceeeeCCCcCHHHHHHHHHHHhcC-C-------CHHHHHHHHHHcCCCHHHHHHH
Confidence 1111 112288999999999998888665311 1 1223677899999998765543
No 44
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.53 E-value=7.6e-07 Score=92.32 Aligned_cols=181 Identities=17% Similarity=0.113 Sum_probs=100.9
Q ss_pred chHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHH
Q 037574 168 RNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILE 247 (961)
Q Consensus 168 r~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~ 247 (961)
.+..++.+..++.. .....+.|+|+.|+|||+||+.+++. ........++++++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~----------~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~------~~-- 81 (226)
T TIGR03420 22 NAELLAALRQLAAG----------KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQ------AD-- 81 (226)
T ss_pred cHHHHHHHHHHHhc----------CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHH------hH--
Confidence 45566677766543 34568999999999999999999984 322333455666442211 00
Q ss_pred HhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhH-HHHHHhccC-CCCCcEEEEecCCCccccccccccc
Q 037574 248 SLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYW-EQLMYSLKS-GSEGSRILVTRRGEKNGTNMTEIGL 325 (961)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~-~~l~~~l~~-~~~gs~ilvTtR~~~v~~~~~~~~~ 325 (961)
.. +...+.+ .-+||+||++.-.....| +.+...+.. ...+..+|+||+............+
T Consensus 82 ------------~~----~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L 144 (226)
T TIGR03420 82 ------------PE----VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDL 144 (226)
T ss_pred ------------HH----HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHH
Confidence 01 1111222 348999999621111133 345544433 1234578888875431110000000
Q ss_pred ccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHHHhh
Q 037574 326 GEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKILGSL 390 (961)
Q Consensus 326 ~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~~~~ 390 (961)
.. .......+++.++++++...++.+.+-.... +--.+..+.|++.+.|.|..+..+...
T Consensus 145 ~~-r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~----~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 145 RT-RLAWGLVFQLPPLSDEEKIAALQSRAARRGL----QLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred HH-HHhcCeeEecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 00 0000157899999999999999876432221 112345677888899998877666443
No 45
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.52 E-value=2.3e-05 Score=92.38 Aligned_cols=203 Identities=16% Similarity=0.176 Sum_probs=122.0
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccC---ceeEEEEeCCC---C
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANF---DKRIWVSASCP---R 236 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~~---~ 236 (961)
++++|++..+..+.+.+.. .....+.|+|++|+||||||+.+++.......+ ...-|+.+... .
T Consensus 154 ~~iiGqs~~~~~l~~~ia~----------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~ 223 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVAS----------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRW 223 (615)
T ss_pred HhceeCcHHHHHHHHHHhc----------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccC
Confidence 3588999999988877753 334579999999999999999998754333333 12345554321 1
Q ss_pred CHHHHHHHH---------------HHHhcCCC------------------CCcccHHHHHHHHHHHhcCCceEEEeeccc
Q 037574 237 DEIRVAKAI---------------LESLKGSV------------------SSQVEMETVLQYINEFVQGKKVLLVLDDVW 283 (961)
Q Consensus 237 ~~~~~~~~i---------------l~~l~~~~------------------~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw 283 (961)
+...+...+ +...+... .+..+ ...+..+.+.+..+++.++-|+.|
T Consensus 224 d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~~ 302 (615)
T TIGR02903 224 DPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEFSSSYYD 302 (615)
T ss_pred CHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEeecceec
Confidence 222221111 11111100 00111 235777888888889888877776
Q ss_pred CCCChhhHHHHHHhccCCCCCcEEEE--ecCCCcc-cccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCC
Q 037574 284 WNACPRYWEQLMYSLKSGSEGSRILV--TRRGEKN-GTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSS 360 (961)
Q Consensus 284 ~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~v-~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 360 (961)
.++...|+.+...+....+...|+| ||++... ...+. .+...+.+.+++.+|.+.++.+.+-.....
T Consensus 303 -~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLr---------SR~~~i~~~pls~edi~~Il~~~a~~~~v~ 372 (615)
T TIGR02903 303 -PDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALR---------SRCAEVFFEPLTPEDIALIVLNAAEKINVH 372 (615)
T ss_pred -cCCcccchhhhhhcccCccceEEEEEeccccccccCHHHH---------hceeEEEeCCCCHHHHHHHHHHHHHHcCCC
Confidence 5556678888877776666555665 5665432 11111 122678899999999999999876422111
Q ss_pred CCccchHHHHHHHHHhcCCchHHHHHHHhh
Q 037574 361 DDREKFEPIGRLVVGKCKGLPFAVKILGSL 390 (961)
Q Consensus 361 ~~~~~l~~~~~~I~~~c~G~PLai~~~~~~ 390 (961)
--.++.+.|.+.+..-+-|+..++.+
T Consensus 373 ----ls~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 373 ----LAAGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred ----CCHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 11344555666555445666655544
No 46
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.51 E-value=9.5e-08 Score=92.25 Aligned_cols=128 Identities=30% Similarity=0.379 Sum_probs=47.1
Q ss_pred cCCCCccEEEeccCCCccccccchhhhc-cCCcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcccCCcc
Q 037574 569 YNQKKLRSLGVEHGGGFMNGIVLSKVFD-QLTCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKKLPKT 647 (961)
Q Consensus 569 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~ 647 (961)
.++.++|.|.+.++. +. .+.. ++ .+.+|++|+|++| . +..++ .+..+++|+.|++++|. ++.+++.
T Consensus 16 ~n~~~~~~L~L~~n~--I~--~Ie~-L~~~l~~L~~L~Ls~N-----~-I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~ 82 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQ--IS--TIEN-LGATLDKLEVLDLSNN-----Q-ITKLE-GLPGLPRLKTLDLSNNR-ISSISEG 82 (175)
T ss_dssp ------------------------S---TT-TT--EEE-TTS--------S--T-T----TT--EEE--SS----S-CHH
T ss_pred ccccccccccccccc--cc--cccc-hhhhhcCCCEEECCCC-----C-Ccccc-CccChhhhhhcccCCCC-CCccccc
Confidence 344456667776665 21 1111 33 4677888888887 3 66664 47778888888888887 7777655
Q ss_pred h-hccCCCcEeecCCCCCCcccc--cccccCCCCcEEEeCCcccccCCcC----CCCCCCCCcCCceEec
Q 037574 648 L-CELYNLQTLELSWCSNLRNLP--QGMGKLINLRHVVNVGTPLSYMPKG----IERWSCLRTLSEFIVS 710 (961)
Q Consensus 648 i-~~L~~L~~L~l~~~~~l~~lP--~~i~~L~~L~~L~l~~~~l~~~p~~----i~~L~~L~~L~~~~~~ 710 (961)
+ ..+++|+.|++++|. +..+- ..+..+++|++|++.+|++...+.. +..+++|+.|+.-.+.
T Consensus 83 l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp HHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred hHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEcc
Confidence 5 357888888888776 55443 3456678888888877777654431 4556666666655544
No 47
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=3.8e-08 Score=103.66 Aligned_cols=213 Identities=21% Similarity=0.130 Sum_probs=123.9
Q ss_pred hcCCCCcceEeccCCCCcccCCc--chhccCCCcEeecCCCCC--CcccccccccCCCCcEEEeCCcccccCCcCCCCCC
Q 037574 624 IKRLIHLRYLNLSKNNKIKKLPK--TLCELYNLQTLELSWCSN--LRNLPQGMGKLINLRHVVNVGTPLSYMPKGIERWS 699 (961)
Q Consensus 624 i~~l~~Lr~L~L~~~~~i~~lp~--~i~~L~~L~~L~l~~~~~--l~~lP~~i~~L~~L~~L~l~~~~l~~~p~~i~~L~ 699 (961)
=.++.+||...|.++. +...+. -...|++++.|||++|-. ...+-.-+..|++|+.|+++.|.+..... +.
T Consensus 117 Qsn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~---s~- 191 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS---SN- 191 (505)
T ss_pred hhhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc---cc-
Confidence 3567778888888777 766663 566788888888887641 12222334567888888877765433211 00
Q ss_pred CCCcCCceEecCCCCCCCCCChhhhhcccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchH
Q 037574 700 CLRTLSEFIVSGGNDDKKASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDE 779 (961)
Q Consensus 700 ~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 779 (961)
.++ .+++|+.|.|+.|... ..
T Consensus 192 --~~~-------------------------------------------------~l~~lK~L~l~~CGls--------~k 212 (505)
T KOG3207|consen 192 --TTL-------------------------------------------------LLSHLKQLVLNSCGLS--------WK 212 (505)
T ss_pred --chh-------------------------------------------------hhhhhheEEeccCCCC--------HH
Confidence 000 1234445555555433 23
Q ss_pred HHHhcCCCCCCcCceEEeeecCccccccccccccCceEEEEeCCCCCC--cCCCCCCCCccceeeeccccCceEeCcccc
Q 037574 780 AVVEGLELPSNLESMEMFYYRGESISLMMIMLSNKLRSLTLDRCVNLK--QLPGLGGLPSLESLTLRNMKRIEKVGNEFL 857 (961)
Q Consensus 780 ~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~--~l~~l~~lp~L~~L~L~~~~~l~~l~~~~~ 857 (961)
++...+...|+|+.|.+.++.+....-.....++.|+.|+|++|..+. .++..+.||.|..|.++.| .+..+..--.
T Consensus 213 ~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~ 291 (505)
T KOG3207|consen 213 DVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDV 291 (505)
T ss_pred HHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc-CcchhcCCCc
Confidence 444444455777777777775322222233356778888888875442 3456788888888888874 3444311100
Q ss_pred ccCCCCCCCcccccCcccceeeccccccccccccccccCcccccccccceecccc
Q 037574 858 LTDRTSSTGTAVSAFPKLKSLVFLKMKAWREWKYKTKRGKHYKIMPCLCSLTIGY 912 (961)
Q Consensus 858 ~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~ 912 (961)
+ +......||+|+.|.+... +..+|.. ......+++|+.|.+..
T Consensus 292 ~------s~~kt~~f~kL~~L~i~~N-~I~~w~s----l~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 292 E------SLDKTHTFPKLEYLNISEN-NIRDWRS----LNHLRTLENLKHLRITL 335 (505)
T ss_pred c------chhhhcccccceeeecccC-ccccccc----cchhhccchhhhhhccc
Confidence 0 0111357889999988775 4566765 44555677777777543
No 48
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.49 E-value=3e-07 Score=92.03 Aligned_cols=47 Identities=32% Similarity=0.516 Sum_probs=32.3
Q ss_pred ccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCC
Q 037574 164 EFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
.|+||+.+++++...|..... ...+.+.|+|++|+|||+|++.++..
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~-------~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQS-------GSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS------------EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHc-------CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 389999999999999962221 55689999999999999999999884
No 49
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.47 E-value=3e-06 Score=93.84 Aligned_cols=197 Identities=13% Similarity=0.103 Sum_probs=110.4
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCc-eeEEEEeCCCCCHHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFD-KRIWVSASCPRDEIRV 241 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~ 241 (961)
.+++|++..++.+..++.. +..+.+.++|+.|+||||+|+.+.+... ...+. ..+.++++...+. .
T Consensus 15 ~~~~g~~~~~~~L~~~~~~----------~~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~--~ 81 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDS----------PNLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQ--G 81 (337)
T ss_pred HHhcCCHHHHHHHHHHHhC----------CCCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhc--c
Confidence 4688999999999988865 3445688999999999999999987321 11222 2344444321100 0
Q ss_pred HHHHH------HHhcCC-CCCcccHHHHHHHHHHH---h--cCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEE
Q 037574 242 AKAIL------ESLKGS-VSSQVEMETVLQYINEF---V--QGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILV 309 (961)
Q Consensus 242 ~~~il------~~l~~~-~~~~~~~~~~~~~l~~~---l--~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilv 309 (961)
...+. ..++.. .......+.....+... . .+.+-+||+||+. .-.......+...+......+++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~-~l~~~~~~~L~~~le~~~~~~~~Il 160 (337)
T PRK12402 82 KKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAE-ALREDAQQALRRIMEQYSRTCRFII 160 (337)
T ss_pred hhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcc-cCCHHHHHHHHHHHHhccCCCeEEE
Confidence 00000 000000 00001112222212121 1 2345589999995 3344445556666655555577877
Q ss_pred ecCCCc-ccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHH
Q 037574 310 TRRGEK-NGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKI 386 (961)
Q Consensus 310 TtR~~~-v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~ 386 (961)
||.... +...+. .+...+.+.+++.++...++.+.+...+.. --.+..+.|++.++|.+-.+..
T Consensus 161 ~~~~~~~~~~~L~---------sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~----~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 161 ATRQPSKLIPPIR---------SRCLPLFFRAPTDDELVDVLESIAEAEGVD----YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred EeCChhhCchhhc---------CCceEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHH
Confidence 775432 211111 122678999999999999998876433322 1244677888899888654433
No 50
>PRK04195 replication factor C large subunit; Provisional
Probab=98.47 E-value=1.8e-05 Score=91.31 Aligned_cols=249 Identities=14% Similarity=0.125 Sum_probs=140.1
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVA 242 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 242 (961)
.+++|.+..++.+.+|+.....+ ...+.+.|+|++|+||||+|+.++++. .|+ .+-++++..... ..+
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g------~~~~~lLL~GppG~GKTtla~ala~el----~~~-~ielnasd~r~~-~~i 81 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKG------KPKKALLLYGPPGVGKTSLAHALANDY----GWE-VIELNASDQRTA-DVI 81 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcC------CCCCeEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEcccccccH-HHH
Confidence 46899999999999998754321 236789999999999999999999842 132 233455543322 223
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhc-CCceEEEeecccCC---CChhhHHHHHHhccCCCCCcEEEEecCCCc-cc
Q 037574 243 KAILESLKGSVSSQVEMETVLQYINEFVQ-GKKVLLVLDDVWWN---ACPRYWEQLMYSLKSGSEGSRILVTRRGEK-NG 317 (961)
Q Consensus 243 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdvw~~---~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~ 317 (961)
..++....... .+. .++-+||+|+++.- .+...+..+...+.. .+..||+|+.+.. ..
T Consensus 82 ~~~i~~~~~~~---------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~ 144 (482)
T PRK04195 82 ERVAGEAATSG---------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPS 144 (482)
T ss_pred HHHHHHhhccC---------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccc
Confidence 33332221110 011 36789999999621 111345566665553 2344666664332 11
Q ss_pred c-cccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHHHhhccCC--
Q 037574 318 T-NMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKILGSLLRFK-- 394 (961)
Q Consensus 318 ~-~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~~~~l~~~-- 394 (961)
. .. ......+.+.+++.++....+.+.+.......+ .++...|++.++|..-.+......+...
T Consensus 145 ~k~L---------rsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~----~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~ 211 (482)
T PRK04195 145 LREL---------RNACLMIEFKRLSTRSIVPVLKRICRKEGIECD----DEALKEIAERSGGDLRSAINDLQAIAEGYG 211 (482)
T ss_pred hhhH---------hccceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHhcCCC
Confidence 1 11 112278999999999999998887654333221 3467888999999876555433333222
Q ss_pred -CCHHHHHHHhhhhhcccchhhhhccCCCCcchhhhHhhhc-CCChHHHHHhhHhccCCCCcccChHHHHHHHHHcCccc
Q 037574 395 -TSIEEWQSVLDSEIWNLDSKICKRAGVGDEYFSPLLLSYY-DLSPALKKCFLYCSIFPKNYEIEKDRLIKLWMAQGYLK 472 (961)
Q Consensus 395 -~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~sy~-~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~W~a~g~i~ 472 (961)
-+.+.-..+.. .+....++.++..-+. .-+......+..+ .++. ..+-.|+.+.+..
T Consensus 212 ~it~~~v~~~~~-------------~d~~~~if~~l~~i~~~k~~~~a~~~~~~~-------~~~~-~~i~~~l~en~~~ 270 (482)
T PRK04195 212 KLTLEDVKTLGR-------------RDREESIFDALDAVFKARNADQALEASYDV-------DEDP-DDLIEWIDENIPK 270 (482)
T ss_pred CCcHHHHHHhhc-------------CCCCCCHHHHHHHHHCCCCHHHHHHHHHcc-------cCCH-HHHHHHHHhcccc
Confidence 12222222211 1133456666665554 2233333332221 1222 3567899999876
Q ss_pred cc
Q 037574 473 LL 474 (961)
Q Consensus 473 ~~ 474 (961)
..
T Consensus 271 ~~ 272 (482)
T PRK04195 271 EY 272 (482)
T ss_pred cc
Confidence 43
No 51
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.46 E-value=2e-06 Score=82.43 Aligned_cols=125 Identities=18% Similarity=0.170 Sum_probs=73.2
Q ss_pred ccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHH
Q 037574 166 HGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAI 245 (961)
Q Consensus 166 vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 245 (961)
.|++..+..+...+.. ...+.+.|+|.+|+||||+++.+++.. ...-..++++..............+
T Consensus 1 ~~~~~~~~~i~~~~~~----------~~~~~v~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~ 68 (151)
T cd00009 1 VGQEEAIEALREALEL----------PPPKNLLLYGPPGTGKTTLARAIANEL--FRPGAPFLYLNASDLLEGLVVAELF 68 (151)
T ss_pred CchHHHHHHHHHHHhC----------CCCCeEEEECCCCCCHHHHHHHHHHHh--hcCCCCeEEEehhhhhhhhHHHHHh
Confidence 3788888888888765 334689999999999999999999842 2222346666655433322211111
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC------CCCcEEEEecCCCc
Q 037574 246 LESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG------SEGSRILVTRRGEK 315 (961)
Q Consensus 246 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~------~~gs~ilvTtR~~~ 315 (961)
... ............++.++|+||++ .........+...+... ..+..||+||....
T Consensus 69 ~~~------------~~~~~~~~~~~~~~~~lilDe~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 69 GHF------------LVRLLFELAEKAKPGVLFIDEID-SLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hhh------------hHhHHHHhhccCCCeEEEEeChh-hhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 000 00111112234567899999996 22122333344433332 35778888887654
No 52
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=5.4e-06 Score=91.83 Aligned_cols=192 Identities=16% Similarity=0.173 Sum_probs=109.0
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVA 242 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 242 (961)
.+++|.+...+.+...+... .-...+.++|+.|+||||+|+.+.+.-.-..... ..++..-...
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~---------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c 79 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLG---------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIIC 79 (363)
T ss_pred hhccChHHHHHHHHHHHHcC---------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHH
Confidence 46899999999998888752 2245678999999999999999987321000000 0000000000
Q ss_pred HHHHHHhcC-----CCCCcccHHH---HHHHHHHH-hcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCC
Q 037574 243 KAILESLKG-----SVSSQVEMET---VLQYINEF-VQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRG 313 (961)
Q Consensus 243 ~~il~~l~~-----~~~~~~~~~~---~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 313 (961)
+++...... ........++ +.+.+... ..+++-++|+|++. .-+...++.+...+.......++|++|.+
T Consensus 80 ~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~-~l~~~a~naLLk~lEe~~~~~~fIl~t~~ 158 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVH-MLSRHSFNALLKTLEEPPQHIKFILATTD 158 (363)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChh-hcCHHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 111100000 0000011122 11111111 12456699999996 44555677788777776666777776644
Q ss_pred C-cccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHH
Q 037574 314 E-KNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAV 384 (961)
Q Consensus 314 ~-~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai 384 (961)
. .+...+. .+...+++.+++.++..+.+.+.+...+.. --.+.++.|++.++|.|-.+
T Consensus 159 ~~~l~~tI~---------SRc~~~~~~~l~~~el~~~L~~~~~~~g~~----i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 159 VEKIPKTIL---------SRCLQFKLKIISEEKIFNFLKYILIKESID----TDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred hHhhhHHHH---------hhceEEeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHH
Confidence 3 2222111 122789999999999999888765432221 12345677899999988543
No 53
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.44 E-value=3.6e-06 Score=86.67 Aligned_cols=161 Identities=17% Similarity=0.194 Sum_probs=101.7
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhc
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQ 271 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 271 (961)
++.+-+.+||++|+||||||+.+....+... +.||..|....-..-.+.|+++-.. ...+.
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~---------------~~~l~ 220 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN---------------EKSLT 220 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH---------------HHhhh
Confidence 6778899999999999999999998533322 5677777655545555666655321 12356
Q ss_pred CCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEE--ecCCCcccccccccccccCCCCCcceeecCCCChHHHHHH
Q 037574 272 GKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILV--TRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSL 349 (961)
Q Consensus 272 ~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~L 349 (961)
++|.+|++|.|. ..+. .+--.+||.-.+|.-++| ||.++...-...-. .+..++.|+.|+.++...+
T Consensus 221 krkTilFiDEiH-RFNk---sQQD~fLP~VE~G~I~lIGATTENPSFqln~aLl-------SRC~VfvLekL~~n~v~~i 289 (554)
T KOG2028|consen 221 KRKTILFIDEIH-RFNK---SQQDTFLPHVENGDITLIGATTENPSFQLNAALL-------SRCRVFVLEKLPVNAVVTI 289 (554)
T ss_pred cceeEEEeHHhh-hhhh---hhhhcccceeccCceEEEecccCCCccchhHHHH-------hccceeEeccCCHHHHHHH
Confidence 789999999995 2222 222336677677887777 67666532211100 1227899999999999999
Q ss_pred HHHHHc---CCCC---CCCcc---chHHHHHHHHHhcCCchH
Q 037574 350 FRQIAF---DGRS---SDDRE---KFEPIGRLVVGKCKGLPF 382 (961)
Q Consensus 350 f~~~~~---~~~~---~~~~~---~l~~~~~~I~~~c~G~PL 382 (961)
+.+..- .... .-+.+ --..+.+-++..|+|-.-
T Consensus 290 L~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 290 LMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred HHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 987422 1111 11111 123466677778888754
No 54
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.44 E-value=3.9e-07 Score=93.84 Aligned_cols=91 Identities=16% Similarity=0.166 Sum_probs=63.4
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCC--CCHHHHHHHHHHHhcCCCCCccc------HHHHH
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCP--RDEIRVAKAILESLKGSVSSQVE------METVL 263 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~il~~l~~~~~~~~~------~~~~~ 263 (961)
..-..++|+|++|+|||||++.++++.... +|+.++|+.++.. +++.++++.+...+-....+... .....
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 345689999999999999999999975444 8999999997776 79999999984333222111111 11222
Q ss_pred HHHHHH-hcCCceEEEeeccc
Q 037574 264 QYINEF-VQGKKVLLVLDDVW 283 (961)
Q Consensus 264 ~~l~~~-l~~kr~LlVlDdvw 283 (961)
...... -.|++.++++|++.
T Consensus 93 ~~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHH
Confidence 222222 25899999999994
No 55
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.43 E-value=1.4e-08 Score=110.12 Aligned_cols=95 Identities=31% Similarity=0.466 Sum_probs=47.0
Q ss_pred ccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccccccccCCCCcE
Q 037574 601 LRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLINLRH 680 (961)
Q Consensus 601 Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~ 680 (961)
|++|.+++|+ +..+|..|+.+.+|..||.+.|. +..+|..++.|..|+.|+++.|. +..+|+.++.| .|..
T Consensus 145 Lkvli~sNNk------l~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~-l~~lp~El~~L-pLi~ 215 (722)
T KOG0532|consen 145 LKVLIVSNNK------LTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSL-PLIR 215 (722)
T ss_pred ceeEEEecCc------cccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCC-ceee
Confidence 4455555542 44455555555555555555554 55555555555555555555444 44455444422 3455
Q ss_pred EEeCCcccccCCcCCCCCCCCCcC
Q 037574 681 VVNVGTPLSYMPKGIERWSCLRTL 704 (961)
Q Consensus 681 L~l~~~~l~~~p~~i~~L~~L~~L 704 (961)
|+++||++..+|-.|.+|+.||+|
T Consensus 216 lDfScNkis~iPv~fr~m~~Lq~l 239 (722)
T KOG0532|consen 216 LDFSCNKISYLPVDFRKMRHLQVL 239 (722)
T ss_pred eecccCceeecchhhhhhhhheee
Confidence 555555555555555544444444
No 56
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=6.7e-06 Score=96.87 Aligned_cols=182 Identities=16% Similarity=0.179 Sum_probs=112.8
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhcc-------------------
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKAN------------------- 223 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~------------------- 223 (961)
.+++|.+..++.|..++... .-...+.++|+.|+||||+|+.+++.-.-...
T Consensus 16 ddIIGQe~Iv~~LknaI~~~---------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~ 86 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQ---------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGR 86 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhC---------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCC
Confidence 36899999999998888752 12345689999999999999999873111100
Q ss_pred CceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-HhcCCceEEEeecccCCCChhhHHHHHHhccCCC
Q 037574 224 FDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINE-FVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGS 302 (961)
Q Consensus 224 F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~ 302 (961)
|.-++++..+....+ .+..++...+.. ...+++-++|+|++. .......+.|...+....
T Consensus 87 ~~DviEidAas~~kV------------------DdIReLie~v~~~P~~gk~KViIIDEAh-~LT~eAqNALLKtLEEPP 147 (944)
T PRK14949 87 FVDLIEVDAASRTKV------------------DDTRELLDNVQYRPSRGRFKVYLIDEVH-MLSRSSFNALLKTLEEPP 147 (944)
T ss_pred CceEEEeccccccCH------------------HHHHHHHHHHHhhhhcCCcEEEEEechH-hcCHHHHHHHHHHHhccC
Confidence 111122221111111 112222222211 124677899999997 556778888888887765
Q ss_pred CCcEEEEecCC-CcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCch
Q 037574 303 EGSRILVTRRG-EKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLP 381 (961)
Q Consensus 303 ~gs~ilvTtR~-~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~P 381 (961)
...++|++|.+ ..+...+- .+...+.+.+|+.++..+.+.+.+-.... ..-.+.++.|++.++|.|
T Consensus 148 ~~vrFILaTTe~~kLl~TIl---------SRCq~f~fkpLs~eEI~~~L~~il~~EgI----~~edeAL~lIA~~S~Gd~ 214 (944)
T PRK14949 148 EHVKFLLATTDPQKLPVTVL---------SRCLQFNLKSLTQDEIGTQLNHILTQEQL----PFEAEALTLLAKAANGSM 214 (944)
T ss_pred CCeEEEEECCCchhchHHHH---------HhheEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCH
Confidence 66666665544 33332211 12288999999999999999886643221 122346788999999988
Q ss_pred HHHH
Q 037574 382 FAVK 385 (961)
Q Consensus 382 Lai~ 385 (961)
--+.
T Consensus 215 R~AL 218 (944)
T PRK14949 215 RDAL 218 (944)
T ss_pred HHHH
Confidence 5433
No 57
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=1.2e-06 Score=100.01 Aligned_cols=197 Identities=16% Similarity=0.158 Sum_probs=113.7
Q ss_pred ccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHH
Q 037574 164 EFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAK 243 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 243 (961)
+++|.+...+.+..++... .-...+.++|++|+||||+|+.+++...-.+.+...+|.|.+... +.....
T Consensus 15 dvvGq~~v~~~L~~~i~~~---------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h 84 (504)
T PRK14963 15 EVVGQEHVKEVLLAALRQG---------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAH 84 (504)
T ss_pred HhcChHHHHHHHHHHHHcC---------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCC
Confidence 5899999888888888753 224567999999999999999998742211223223343322110 000000
Q ss_pred HHHHHhcCC-CCCcccHHHHHHHHHH-HhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCC-Ccccccc
Q 037574 244 AILESLKGS-VSSQVEMETVLQYINE-FVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRG-EKNGTNM 320 (961)
Q Consensus 244 ~il~~l~~~-~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~~ 320 (961)
..+..+... .....+..++...+.. -..+++-++|+|+++ ......++.+...+......+.+|++|.. ..+...+
T Consensus 85 ~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad-~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I 163 (504)
T PRK14963 85 PDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAH-MMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTI 163 (504)
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECcc-ccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHH
Confidence 000000000 0011111222222221 123566799999997 55666788888888765555565555543 3332222
Q ss_pred cccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHH
Q 037574 321 TEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAV 384 (961)
Q Consensus 321 ~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai 384 (961)
. .+...+++.+++.++....+.+.+...+... -.+....|++.++|.+--+
T Consensus 164 ~---------SRc~~~~f~~ls~~el~~~L~~i~~~egi~i----~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 164 L---------SRTQHFRFRRLTEEEIAGKLRRLLEAEGREA----EPEALQLVARLADGAMRDA 214 (504)
T ss_pred h---------cceEEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 1 1227899999999999999988764433221 2346788999999988544
No 58
>PF13173 AAA_14: AAA domain
Probab=98.42 E-value=9.5e-07 Score=82.03 Aligned_cols=126 Identities=23% Similarity=0.324 Sum_probs=78.3
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCC
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGK 273 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 273 (961)
.+++.|.|+.|+|||||+++++++.. ....+++++..+........ .+ +.+.+.+....+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD----------------PD-LLEYFLELIKPG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh----------------hh-hHHHHHHhhccC
Confidence 36899999999999999999997422 33456777765432211000 00 223333334447
Q ss_pred ceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCcccccccccccccCCCCCcceeecCCCChHHH
Q 037574 274 KVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKEC 346 (961)
Q Consensus 274 r~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~ 346 (961)
+.+|++|++. ....|......+-+.....+|++|+.+......-.. .....+...+++.||+-.|.
T Consensus 62 ~~~i~iDEiq---~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~----~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQ---YLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIA----ESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhh---hhccHHHHHHHHHHhccCceEEEEccchHHHhhccc----ccCCCeEEEEEECCCCHHHh
Confidence 8899999996 334566655555554466799999987665432111 01123336789999997763
No 59
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=6.2e-06 Score=94.18 Aligned_cols=193 Identities=16% Similarity=0.175 Sum_probs=112.5
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVA 242 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 242 (961)
.+++|.+...+.+..++... .-...+.++|+.|+||||+|+.+.+. +. |.-|+.. ..+..-...
T Consensus 15 ddVIGQe~vv~~L~~aI~~g---------rl~HAyLF~GPpGvGKTTlAriLAK~--Ln----C~~~~~~-~pCg~C~sC 78 (702)
T PRK14960 15 NELVGQNHVSRALSSALERG---------RLHHAYLFTGTRGVGKTTIARILAKC--LN----CETGVTS-TPCEVCATC 78 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcC---------CCCeEEEEECCCCCCHHHHHHHHHHH--hC----CCcCCCC-CCCccCHHH
Confidence 36899999999999998753 22467899999999999999998763 11 1001100 001100111
Q ss_pred HHHHHHhcC-----CCCCcccHHHHHHHHHH----HhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCC
Q 037574 243 KAILESLKG-----SVSSQVEMETVLQYINE----FVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRG 313 (961)
Q Consensus 243 ~~il~~l~~-----~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 313 (961)
+.+...-.. ........+++.+.+.. -..+++-++|+|++. .-+......+...+.....+.++|++|.+
T Consensus 79 ~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh-~LS~~A~NALLKtLEEPP~~v~FILaTtd 157 (702)
T PRK14960 79 KAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVH-MLSTHSFNALLKTLEEPPEHVKFLFATTD 157 (702)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechH-hcCHHHHHHHHHHHhcCCCCcEEEEEECC
Confidence 111100000 00001122222222111 123567799999996 55666777788888776666777777654
Q ss_pred Cc-ccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHH
Q 037574 314 EK-NGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVK 385 (961)
Q Consensus 314 ~~-v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~ 385 (961)
.. +..... .+...+++++++.++..+.+.+.+...+... -.+....|++.++|.+-.+.
T Consensus 158 ~~kIp~TIl---------SRCq~feFkpLs~eEI~k~L~~Il~kEgI~i----d~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 158 PQKLPITVI---------SRCLQFTLRPLAVDEITKHLGAILEKEQIAA----DQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred hHhhhHHHH---------HhhheeeccCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHH
Confidence 32 221111 1228899999999999999988764433222 23456778999999885443
No 60
>PRK08727 hypothetical protein; Validated
Probab=98.40 E-value=5.3e-06 Score=85.67 Aligned_cols=158 Identities=18% Similarity=0.118 Sum_probs=88.6
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCC
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGK 273 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 273 (961)
...+.|+|..|+|||+|++.+++. .......++++++.+ ....+. ..+ +.+ .+
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~-----------------~~~-~~l-~~ 93 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR-----------------DAL-EAL-EG 93 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH-----------------HHH-HHH-hc
Confidence 356999999999999999999884 333333556776432 111111 111 111 13
Q ss_pred ceEEEeecccCCCChhhHHH-HHHhccC-CCCCcEEEEecCCCcccc-cccccccccCCCCCcceeecCCCChHHHHHHH
Q 037574 274 KVLLVLDDVWWNACPRYWEQ-LMYSLKS-GSEGSRILVTRRGEKNGT-NMTEIGLGEKDGTNMTEIGLGELSAKECRSLF 350 (961)
Q Consensus 274 r~LlVlDdvw~~~~~~~~~~-l~~~l~~-~~~gs~ilvTtR~~~v~~-~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf 350 (961)
.-+||+||+..-.....|.. +...+.. ..+|..||+|++...-.- ..... +. .+-.....+++++++.++-.+++
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~d-L~-SRl~~~~~~~l~~~~~e~~~~iL 171 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPD-LR-SRLAQCIRIGLPVLDDVARAAVL 171 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHH-HH-HHHhcCceEEecCCCHHHHHHHH
Confidence 35899999952222233433 3333322 124667999998532100 00000 00 00001268899999999999999
Q ss_pred HHHHcCCCCCCCccchHHHHHHHHHhcCCchHHH
Q 037574 351 RQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAV 384 (961)
Q Consensus 351 ~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai 384 (961)
++.+....- .--.+....|++.++|..-.+
T Consensus 172 ~~~a~~~~l----~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 172 RERAQRRGL----ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHHcCC----CCCHHHHHHHHHhCCCCHHHH
Confidence 987654322 122345677888888776554
No 61
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.38 E-value=8e-06 Score=80.53 Aligned_cols=181 Identities=21% Similarity=0.247 Sum_probs=96.4
Q ss_pred CCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHH
Q 037574 162 PLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRV 241 (961)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 241 (961)
-.+|+|.+.-+..+.-++....... ....-+.+||++|+||||||.-+.+ .....|. +++... .+-..-
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~-----~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~~-i~k~~d 91 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRG-----EALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGPA-IEKAGD 91 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTT-----S---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECCC---SCHH
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcC-----CCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccchh-hhhHHH
Confidence 3479999988887655544211100 4567889999999999999999999 4444442 233211 100011
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCC--------CC---------
Q 037574 242 AKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGS--------EG--------- 304 (961)
Q Consensus 242 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~--------~g--------- 304 (961)
+..++ .. + +++-+|++|+++ .-+...-+.+...+.++. .+
T Consensus 92 l~~il--------------------~~-l-~~~~ILFIDEIH-Rlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 92 LAAIL--------------------TN-L-KEGDILFIDEIH-RLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp HHHHH--------------------HT----TT-EEEECTCC-C--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred HHHHH--------------------Hh-c-CCCcEEEEechh-hccHHHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 11111 11 2 245688889996 445555555555554431 11
Q ss_pred --cEEEEecCCCcccccccccccccCCCCCc-ceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCch
Q 037574 305 --SRILVTRRGEKNGTNMTEIGLGEKDGTNM-TEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLP 381 (961)
Q Consensus 305 --s~ilvTtR~~~v~~~~~~~~~~~~~~~~~-~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~P 381 (961)
+-|=-|||...+...+.. ++ -..+++..+.+|-.++..+.+..-.. +--.+.+.+|++++.|-|
T Consensus 149 ~FTligATTr~g~ls~pLrd---------RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i----~i~~~~~~~Ia~rsrGtP 215 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRD---------RFGIVLRLEFYSEEELAKIVKRSARILNI----EIDEDAAEEIARRSRGTP 215 (233)
T ss_dssp --EEEEEESSGCCTSHCCCT---------TSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSH
T ss_pred CceEeeeeccccccchhHHh---------hcceecchhcCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHhcCCCh
Confidence 123347776554443322 11 34579999999999999887643322 233567899999999999
Q ss_pred HHHHHHHh
Q 037574 382 FAVKILGS 389 (961)
Q Consensus 382 Lai~~~~~ 389 (961)
--+.-+-.
T Consensus 216 RiAnrll~ 223 (233)
T PF05496_consen 216 RIANRLLR 223 (233)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65444433
No 62
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.38 E-value=1.2e-08 Score=110.64 Aligned_cols=161 Identities=20% Similarity=0.270 Sum_probs=102.1
Q ss_pred cEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcCCCCc
Q 037574 551 PHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRLIHL 630 (961)
Q Consensus 551 r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L 630 (961)
..++++.|.+ ..+|..+..+-.|..+.++.|. + ..++..+.++..|.+|||+.|+ +..+|..++.|+ |
T Consensus 78 ~~aDlsrNR~-~elp~~~~~f~~Le~liLy~n~--~--r~ip~~i~~L~~lt~l~ls~Nq------lS~lp~~lC~lp-L 145 (722)
T KOG0532|consen 78 VFADLSRNRF-SELPEEACAFVSLESLILYHNC--I--RTIPEAICNLEALTFLDLSSNQ------LSHLPDGLCDLP-L 145 (722)
T ss_pred hhhhcccccc-ccCchHHHHHHHHHHHHHHhcc--c--eecchhhhhhhHHHHhhhccch------hhcCChhhhcCc-c
Confidence 3345555555 4566666666667777666654 2 2345556777777777777773 677777777665 7
Q ss_pred ceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcccccCCcCCCCCCCCCcCCceEec
Q 037574 631 RYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLSYMPKGIERWSCLRTLSEFIVS 710 (961)
Q Consensus 631 r~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~~~p~~i~~L~~L~~L~~~~~~ 710 (961)
+.|-+++|+ ++.+|..|+.+..|..||.+.|. +..+|..++.|.+|+.|.+..|.+..+|..+..|+ |. .+.++
T Consensus 146 kvli~sNNk-l~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li---~lDfS 219 (722)
T KOG0532|consen 146 KVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LI---RLDFS 219 (722)
T ss_pred eeEEEecCc-cccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-ee---eeecc
Confidence 777777776 77777777777777777777766 77777777777777777777777777777665443 22 23334
Q ss_pred CCCCCCCCCChhhhhcccc
Q 037574 711 GGNDDKKASKLECLKSLNH 729 (961)
Q Consensus 711 ~~~~~~~~~~l~~L~~L~~ 729 (961)
.+.....+..+..++.|..
T Consensus 220 cNkis~iPv~fr~m~~Lq~ 238 (722)
T KOG0532|consen 220 CNKISYLPVDFRKMRHLQV 238 (722)
T ss_pred cCceeecchhhhhhhhhee
Confidence 4443344444444444443
No 63
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.37 E-value=6.2e-08 Score=96.67 Aligned_cols=133 Identities=24% Similarity=0.293 Sum_probs=95.3
Q ss_pred cCCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhc
Q 037574 546 SHEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIK 625 (961)
Q Consensus 546 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~ 625 (961)
.+..+..+++++|.+ ..+.+++.-.+.+|.|+++.|. +. .-..+..+++|..|||++|. +.++-..--
T Consensus 282 TWq~LtelDLS~N~I-~~iDESvKL~Pkir~L~lS~N~--i~---~v~nLa~L~~L~~LDLS~N~------Ls~~~Gwh~ 349 (490)
T KOG1259|consen 282 TWQELTELDLSGNLI-TQIDESVKLAPKLRRLILSQNR--IR---TVQNLAELPQLQLLDLSGNL------LAECVGWHL 349 (490)
T ss_pred hHhhhhhccccccch-hhhhhhhhhccceeEEeccccc--ee---eehhhhhcccceEeecccch------hHhhhhhHh
Confidence 355677788888877 4456677778888888888876 21 12226778888888888883 555544445
Q ss_pred CCCCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccc--cccccCCCCcEEEeCCcccccCCc
Q 037574 626 RLIHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLP--QGMGKLINLRHVVNVGTPLSYMPK 693 (961)
Q Consensus 626 ~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP--~~i~~L~~L~~L~l~~~~l~~~p~ 693 (961)
+|-+.+.|.|++|. ++.+.. +++|++|..||+++|+ +..+- .+|++|+.|++|.+.+|.+..+|.
T Consensus 350 KLGNIKtL~La~N~-iE~LSG-L~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 350 KLGNIKTLKLAQNK-IETLSG-LRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhcCEeeeehhhhh-Hhhhhh-hHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 67778888888887 777743 7888888888888876 66664 468888888888887777765553
No 64
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=2e-05 Score=86.24 Aligned_cols=216 Identities=21% Similarity=0.238 Sum_probs=133.3
Q ss_pred CCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCc--eeEEEEeCCCCCHH
Q 037574 162 PLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFD--KRIWVSASCPRDEI 239 (961)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~s~~~~~~ 239 (961)
|..+.+|+.+++++...|...-.+ +.+.-+.|+|..|+|||+.++.|++. +..... .++.|++-...+..
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~------~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRG------ERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcC------CCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHH
Confidence 334889999999999988765432 23344999999999999999999984 433322 27889999999999
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhc--CCceEEEeecccCCCChhhHHHHHHhccCCC-CCcEEEE--ecCCC
Q 037574 240 RVAKAILESLKGSVSSQVEMETVLQYINEFVQ--GKKVLLVLDDVWWNACPRYWEQLMYSLKSGS-EGSRILV--TRRGE 314 (961)
Q Consensus 240 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~-~gs~ilv--TtR~~ 314 (961)
+++..|+.+++..........+....+.+.+. ++.+++|||++..-.+... +.+-..+.... ..++|+| .+-+.
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-~~LY~L~r~~~~~~~~v~vi~i~n~~ 166 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-EVLYSLLRAPGENKVKVSIIAVSNDD 166 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-hHHHHHHhhccccceeEEEEEEeccH
Confidence 99999999998555555666777777777774 6889999999951111111 23333333322 2455433 33333
Q ss_pred cccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCC--CCCccchHHHHHHHHHhcCCchHHHHHHHh
Q 037574 315 KNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRS--SDDREKFEPIGRLVVGKCKGLPFAVKILGS 389 (961)
Q Consensus 315 ~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~--~~~~~~l~~~~~~I~~~c~G~PLai~~~~~ 389 (961)
.....+... +...-+. ..+...|-+.+|-...+..++-..-. ..++..++-+|...++..|--=.|+..+-.
T Consensus 167 ~~~~~ld~r-v~s~l~~--~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~ 240 (366)
T COG1474 167 KFLDYLDPR-VKSSLGP--SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRR 240 (366)
T ss_pred HHHHHhhhh-hhhccCc--ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHH
Confidence 222222211 0000111 44788899999999999887643211 122334444444444444444445555443
No 65
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=1e-05 Score=92.45 Aligned_cols=185 Identities=18% Similarity=0.241 Sum_probs=112.5
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChh----h---------------hcc
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSD----V---------------KAN 223 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~----~---------------~~~ 223 (961)
.+++|.+..+..+...+... .-...+.++|+.|+||||+|+.+++... . ...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~---------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~ 86 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQ---------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNS 86 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcC---------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCC
Confidence 35899999999999888752 2235678999999999999999976210 0 011
Q ss_pred CceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-hcCCceEEEeecccCCCChhhHHHHHHhccCCC
Q 037574 224 FDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEF-VQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGS 302 (961)
Q Consensus 224 F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~ 302 (961)
|...+++.......++ +..++.+.+... ..+++-++|+|++. ..+....+.+...+....
T Consensus 87 ~~dlieidaas~~gvd------------------~ir~ii~~~~~~p~~g~~kViIIDEa~-~ls~~a~naLLK~LEepp 147 (546)
T PRK14957 87 FIDLIEIDAASRTGVE------------------ETKEILDNIQYMPSQGRYKVYLIDEVH-MLSKQSFNALLKTLEEPP 147 (546)
T ss_pred CCceEEeecccccCHH------------------HHHHHHHHHHhhhhcCCcEEEEEechh-hccHHHHHHHHHHHhcCC
Confidence 2222333222111111 122222222221 24667799999996 556667888888888765
Q ss_pred CCcEEEE-ecCCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCch
Q 037574 303 EGSRILV-TRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLP 381 (961)
Q Consensus 303 ~gs~ilv-TtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~P 381 (961)
..+.+|+ ||....+...+. .+...+++.+++.++....+.+.+...+. ..-......|++.++|.+
T Consensus 148 ~~v~fIL~Ttd~~kil~tI~---------SRc~~~~f~~Ls~~eI~~~L~~il~~egi----~~e~~Al~~Ia~~s~Gdl 214 (546)
T PRK14957 148 EYVKFILATTDYHKIPVTIL---------SRCIQLHLKHISQADIKDQLKIILAKENI----NSDEQSLEYIAYHAKGSL 214 (546)
T ss_pred CCceEEEEECChhhhhhhHH---------HheeeEEeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCH
Confidence 5666554 544333332211 12288999999999998888776533221 112345677899999976
Q ss_pred H-HHHHHH
Q 037574 382 F-AVKILG 388 (961)
Q Consensus 382 L-ai~~~~ 388 (961)
- |+..+-
T Consensus 215 R~alnlLe 222 (546)
T PRK14957 215 RDALSLLD 222 (546)
T ss_pred HHHHHHHH
Confidence 4 444443
No 66
>PLN03025 replication factor C subunit; Provisional
Probab=98.34 E-value=1.2e-05 Score=87.61 Aligned_cols=183 Identities=13% Similarity=0.121 Sum_probs=108.2
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCc-eeEEEEeCCCCCHHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFD-KRIWVSASCPRDEIRV 241 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~ 241 (961)
.+++|.+..++.+..++.. +..+-+.++|++|+||||+|+.+++.. ....|. .++-++.+...... .
T Consensus 13 ~~~~g~~~~~~~L~~~~~~----------~~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~ 80 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARD----------GNMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-V 80 (319)
T ss_pred HHhcCcHHHHHHHHHHHhc----------CCCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-H
Confidence 3588998888888877764 334457799999999999999998731 122232 12223333322221 2
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCC-cccccc
Q 037574 242 AKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGE-KNGTNM 320 (961)
Q Consensus 242 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~ 320 (961)
++++++.+...... .-.++.-++|+|++. .-.......+...+......+++++++... .+...+
T Consensus 81 vr~~i~~~~~~~~~-------------~~~~~~kviiiDE~d-~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L 146 (319)
T PLN03025 81 VRNKIKMFAQKKVT-------------LPPGRHKIVILDEAD-SMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPI 146 (319)
T ss_pred HHHHHHHHHhcccc-------------CCCCCeEEEEEechh-hcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhH
Confidence 22222222110000 002456799999996 444455556666665545567777766433 222211
Q ss_pred cccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHH
Q 037574 321 TEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAV 384 (961)
Q Consensus 321 ~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai 384 (961)
. .+...+++.++++++....+...+-..+..-+ .+....|++.++|..-.+
T Consensus 147 ~---------SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 147 Q---------SRCAIVRFSRLSDQEILGRLMKVVEAEKVPYV----PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred H---------HhhhcccCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 1 11268999999999999999887644332221 345778899999876433
No 67
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.34 E-value=3.8e-07 Score=88.08 Aligned_cols=107 Identities=29% Similarity=0.410 Sum_probs=37.5
Q ss_pred hccCCcccEEEccCCChhhhhhhcccchhhc-CCCCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccccccc
Q 037574 595 FDQLTCLRTLELSNHDNVLCKVIKKVPKQIK-RLIHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQGMG 673 (961)
Q Consensus 595 ~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~-~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~ 673 (961)
+.+...+|.|+|+++. +..+. .++ .+.+|+.|+|++|. ++.++. +..|++|++|++++|. ++.++..+.
T Consensus 15 ~~n~~~~~~L~L~~n~------I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~~-l~~L~~L~~L~L~~N~-I~~i~~~l~ 84 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQ------ISTIE-NLGATLDKLEVLDLSNNQ-ITKLEG-LPGLPRLKTLDLSNNR-ISSISEGLD 84 (175)
T ss_dssp ----------------------------S--TT-TT--EEE-TTS---S--TT-----TT--EEE--SS----S-CHHHH
T ss_pred cccccccccccccccc------ccccc-chhhhhcCCCEEECCCCC-CccccC-ccChhhhhhcccCCCC-CCccccchH
Confidence 3455678999999993 66653 465 58899999999999 999864 8889999999999988 888876664
Q ss_pred -cCCCCcEEEeCCcccccCCcCCCCCCCCCcCCceEecCC
Q 037574 674 -KLINLRHVVNVGTPLSYMPKGIERWSCLRTLSEFIVSGG 712 (961)
Q Consensus 674 -~L~~L~~L~l~~~~l~~~p~~i~~L~~L~~L~~~~~~~~ 712 (961)
.+++|++|++++|++..+. .+..|..+..|....+.++
T Consensus 85 ~~lp~L~~L~L~~N~I~~l~-~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 85 KNLPNLQELYLSNNKISDLN-ELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp HH-TT--EEE-TTS---SCC-CCGGGGG-TT--EEE-TT-
T ss_pred HhCCcCCEEECcCCcCCChH-HhHHHHcCCCcceeeccCC
Confidence 6999999999999887653 2444444444444444443
No 68
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1.3e-05 Score=91.25 Aligned_cols=196 Identities=14% Similarity=0.193 Sum_probs=113.2
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhc---cCceeEEEEeCCCCCHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKA---NFDKRIWVSASCPRDEI 239 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~wv~~s~~~~~~ 239 (961)
.++||.+..++.|..++... .-...+.++|..|+||||+|+.+.+.-.-.. ... + .+..+..-
T Consensus 16 ddVIGQe~vv~~L~~al~~g---------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g----~-~~~PCG~C 81 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQ---------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG----I-TAQPCGQC 81 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhC---------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc----C-CCCCCccc
Confidence 36899999999999998763 2245678999999999999999976311000 000 0 00001000
Q ss_pred HHHHHHHHH-----hcCCCCCcccHHHHHHHHHHH----hcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEE-
Q 037574 240 RVAKAILES-----LKGSVSSQVEMETVLQYINEF----VQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILV- 309 (961)
Q Consensus 240 ~~~~~il~~-----l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilv- 309 (961)
...+.|... +..+.......+++.+.+... ..++.-++|+|++. ..+...++.+...+..-...+++|+
T Consensus 82 ~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah-~Ls~~AaNALLKTLEEPP~~v~FILa 160 (700)
T PRK12323 82 RACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVH-MLTNHAFNAMLKTLEEPPEHVKFILA 160 (700)
T ss_pred HHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChH-hcCHHHHHHHHHhhccCCCCceEEEE
Confidence 111111100 000000111223332222221 24567799999997 5566778888888876555556554
Q ss_pred ecCCCcccccc-cccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHH
Q 037574 310 TRRGEKNGTNM-TEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKIL 387 (961)
Q Consensus 310 TtR~~~v~~~~-~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~ 387 (961)
||....+...+ +.. ..+.+..++.++..+.+.+.+...+.. .-.+..+.|++.++|.|.-+..+
T Consensus 161 Ttep~kLlpTIrSRC----------q~f~f~~ls~eei~~~L~~Il~~Egi~----~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 161 TTDPQKIPVTVLSRC----------LQFNLKQMPPGHIVSHLDAILGEEGIA----HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred eCChHhhhhHHHHHH----------HhcccCCCChHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 55444444322 223 889999999999999988775432221 11335677899999999644443
No 69
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.32 E-value=2e-05 Score=86.46 Aligned_cols=181 Identities=14% Similarity=0.114 Sum_probs=107.8
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEe--CCCCCHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSA--SCPRDEIR 240 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~--s~~~~~~~ 240 (961)
.+++|++..++.+..++.. +..+.+.|+|..|+||||+|+.+.+.. ....+. ..++.+ +......
T Consensus 17 ~~~~g~~~~~~~l~~~i~~----------~~~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~-~~~i~~~~~~~~~~~- 83 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKE----------KNMPHLLFAGPPGTGKTTAALALAREL-YGEDWR-ENFLELNASDERGID- 83 (319)
T ss_pred HHhcCcHHHHHHHHHHHhC----------CCCCeEEEECCCCCCHHHHHHHHHHHH-cCCccc-cceEEeccccccchH-
Confidence 4588999999999998865 344567999999999999999998732 111221 122222 2221111
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCC-ccccc
Q 037574 241 VAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGE-KNGTN 319 (961)
Q Consensus 241 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~ 319 (961)
...+.+..+....+ .....+-++++|++. ....+....+...+......+.+|+++... .+...
T Consensus 84 ~~~~~i~~~~~~~~--------------~~~~~~~vviiDe~~-~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~ 148 (319)
T PRK00440 84 VIRNKIKEFARTAP--------------VGGAPFKIIFLDEAD-NLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDP 148 (319)
T ss_pred HHHHHHHHHHhcCC--------------CCCCCceEEEEeCcc-cCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchh
Confidence 11111111110000 001245689999985 334455666777766655566777766433 22221
Q ss_pred ccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHH
Q 037574 320 MTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAV 384 (961)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai 384 (961)
.. .+...+++.+++.++....+.+.+...+.. --.+....+++.++|.+--+
T Consensus 149 l~---------sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~----i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 149 IQ---------SRCAVFRFSPLKKEAVAERLRYIAENEGIE----ITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred HH---------HHhheeeeCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHH
Confidence 11 112678999999999999998876433321 12346778899999988653
No 70
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.30 E-value=6e-06 Score=97.98 Aligned_cols=177 Identities=18% Similarity=0.233 Sum_probs=97.7
Q ss_pred CccccchHHHH---HHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHH
Q 037574 163 LEFHGRNVEKK---NILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEI 239 (961)
Q Consensus 163 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 239 (961)
.+|+|.+..+. .+...+.. .....+.++|++|+||||||+.+++ ....+|. .++.+. ....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~----------~~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f~---~lna~~-~~i~ 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA----------DRVGSLILYGPPGVGKTTLARIIAN--HTRAHFS---SLNAVL-AGVK 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc----------CCCceEEEECCCCCCHHHHHHHHHH--HhcCcce---eehhhh-hhhH
Confidence 35788887664 45555543 4456788999999999999999998 3444441 122110 0000
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHh--cCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCccc
Q 037574 240 RVAKAILESLKGSVSSQVEMETVLQYINEFV--QGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNG 317 (961)
Q Consensus 240 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 317 (961)
+..+......+.+ .+++.+||+||++ .-+...++.+...+. .|+.++|++......
T Consensus 92 ------------------dir~~i~~a~~~l~~~~~~~IL~IDEIh-~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~ 149 (725)
T PRK13341 92 ------------------DLRAEVDRAKERLERHGKRTILFIDEVH-RFNKAQQDALLPWVE---NGTITLIGATTENPY 149 (725)
T ss_pred ------------------HHHHHHHHHHHHhhhcCCceEEEEeChh-hCCHHHHHHHHHHhc---CceEEEEEecCCChH
Confidence 1111112222222 2567899999996 445555666665443 355566543322211
Q ss_pred ccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCC---CCCCccchHHHHHHHHHhcCCchH
Q 037574 318 TNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGR---SSDDREKFEPIGRLVVGKCKGLPF 382 (961)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~---~~~~~~~l~~~~~~I~~~c~G~PL 382 (961)
..+... -.++...+.+++++.++...++.+.+-... ......--.+....|++.+.|..-
T Consensus 150 ~~l~~a-----L~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 150 FEVNKA-----LVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hhhhhH-----hhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 101000 001126799999999999999988653100 000111223456778888888643
No 71
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.28 E-value=1.9e-06 Score=91.45 Aligned_cols=277 Identities=19% Similarity=0.136 Sum_probs=168.0
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccCc-eeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANFD-KRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFV 270 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 270 (961)
...+-+.++|.|||||||++-.+.. +...|. .+.++......+...+.-.+...++...... +.....+....
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g---~~~~~~~~~~~ 85 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG---DSAVDTLVRRI 85 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccccc---hHHHHHHHHHH
Confidence 3468899999999999999999987 556675 5666666666677766666666676554221 22334555666
Q ss_pred cCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCcccccccccccccCCCCCcceeecCCCChH-HHHHH
Q 037574 271 QGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAK-ECRSL 349 (961)
Q Consensus 271 ~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~-~~~~L 349 (961)
.++|.++|+||-- +-.+.-..+...+-.+...-.|+.|+|....... . ....+.+|+.. ++.++
T Consensus 86 ~~rr~llvldnce--hl~~~~a~~i~all~~~~~~~~~atsre~~l~~g-----------e--~~~~~~~L~~~d~a~~l 150 (414)
T COG3903 86 GDRRALLVLDNCE--HLLDACAALIVALLGACPRLAILATSREAILVAG-----------E--VHRRVPSLSLFDEAIEL 150 (414)
T ss_pred hhhhHHHHhcCcH--HHHHHHHHHHHHHHccchhhhhHHHhHhhhcccc-----------c--ccccCCccccCCchhHH
Confidence 7899999999983 1222333344445555556678889886654332 1 55667777665 68888
Q ss_pred HHHHHcCCCCC-CCccchHHHHHHHHHhcCCchHHHHHHHhhccCCCCHHHHHHHhhhhhcccchhhhhccCCCCcchhh
Q 037574 350 FRQIAFDGRSS-DDREKFEPIGRLVVGKCKGLPFAVKILGSLLRFKTSIEEWQSVLDSEIWNLDSKICKRAGVGDEYFSP 428 (961)
Q Consensus 350 f~~~~~~~~~~-~~~~~l~~~~~~I~~~c~G~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 428 (961)
|...+...... .-...-.....+|.++.+|.|++|...++..+.- ...+-..-++.....+..............+..
T Consensus 151 f~~ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~as 229 (414)
T COG3903 151 FVCRAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRAS 229 (414)
T ss_pred HHHHHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccch
Confidence 87665322211 1112234467889999999999999999877643 222222222221111111000000122356788
Q ss_pred hHhhhcCCChHHHHHhhHhccCCCCcccChHHHHHHHHHcCcccccccccHHHHHHHHHHHHHhCCCCcc
Q 037574 429 LLLSYYDLSPALKKCFLYCSIFPKNYEIEKDRLIKLWMAQGYLKLLESEDMEVIGEEYFANLASRSLFQD 498 (961)
Q Consensus 429 l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~ 498 (961)
+.+||.-|....+-.|.-++.|.-.+... ...|.+-|-.... +.-....-+..+++++++..
T Consensus 230 l~ws~~lLtgwe~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~----~~y~~~~a~~ll~~kslv~a 291 (414)
T COG3903 230 LDWSYALLTGWERALFGRLAVFVGGFDLG----LALAVAAGADVDV----PRYLVLLALTLLVDKSLVVA 291 (414)
T ss_pred hhhhhHhhhhHHHHHhcchhhhhhhhccc----HHHHHhcCCcccc----chHHHHHHHHHHhhccchhh
Confidence 99999999999999999999998776544 3345554422110 11122334556667766544
No 72
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=2.8e-05 Score=85.92 Aligned_cols=185 Identities=11% Similarity=0.095 Sum_probs=109.0
Q ss_pred ccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhh------------------ccCc
Q 037574 164 EFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVK------------------ANFD 225 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~------------------~~F~ 225 (961)
+++|.+..++.+..++......-...+..-.+.+.++|+.|+|||++|+.+.+..--. +.+.
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hp 85 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHP 85 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 5889999999999988764311000000134678899999999999999986521000 0011
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHH---HHHHHH-HhcCCceEEEeecccCCCChhhHHHHHHhccCC
Q 037574 226 KRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETV---LQYINE-FVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG 301 (961)
Q Consensus 226 ~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~---~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~ 301 (961)
-+.++.... .....+++ .+.... -..+++-++|+|++. .-+......+...+...
T Consensus 86 D~~~i~~~~--------------------~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead-~m~~~aanaLLk~LEep 144 (394)
T PRK07940 86 DVRVVAPEG--------------------LSIGVDEVRELVTIAARRPSTGRWRIVVIEDAD-RLTERAANALLKAVEEP 144 (394)
T ss_pred CEEEecccc--------------------ccCCHHHHHHHHHHHHhCcccCCcEEEEEechh-hcCHHHHHHHHHHhhcC
Confidence 111221110 01112222 221111 113456688899996 44556666777777766
Q ss_pred CCCcEEEEecCCC-cccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCc
Q 037574 302 SEGSRILVTRRGE-KNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGL 380 (961)
Q Consensus 302 ~~gs~ilvTtR~~-~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~ 380 (961)
..+..+|++|.+. .+...+. ++...+.+.+++.++..+.+.+... . -.+.+..++..++|.
T Consensus 145 ~~~~~fIL~a~~~~~llpTIr---------SRc~~i~f~~~~~~~i~~~L~~~~~---~------~~~~a~~la~~s~G~ 206 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIR---------SRCRHVALRTPSVEAVAEVLVRRDG---V------DPETARRAARASQGH 206 (394)
T ss_pred CCCCeEEEEECChHHChHHHH---------hhCeEEECCCCCHHHHHHHHHHhcC---C------CHHHHHHHHHHcCCC
Confidence 6667676666554 3332221 1228899999999999988875321 1 123477889999999
Q ss_pred hHHHHHH
Q 037574 381 PFAVKIL 387 (961)
Q Consensus 381 PLai~~~ 387 (961)
|.....+
T Consensus 207 ~~~A~~l 213 (394)
T PRK07940 207 IGRARRL 213 (394)
T ss_pred HHHHHHH
Confidence 9765544
No 73
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=1.7e-05 Score=88.32 Aligned_cols=189 Identities=12% Similarity=0.092 Sum_probs=110.4
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCc-cEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTL-PVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRV 241 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 241 (961)
.+++|.+..+..+..++.. ++. ..+.++|+.|+||||+|+.+++.-.-. +... ...+.....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~----------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce-~~~~--~~pCg~C~s---- 80 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKS----------GKIGHAYIFFGPRGVGKTTIARILAKRLNCE-NPIG--NEPCNECTS---- 80 (484)
T ss_pred HHHhChHHHHHHHHHHHHc----------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcc-cccC--ccccCCCcH----
Confidence 3589999999988888875 333 468899999999999999998731110 0000 000000000
Q ss_pred HHHHHHHhcCCC--------CCcccHHHHHHHHHHH-hcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEE-ec
Q 037574 242 AKAILESLKGSV--------SSQVEMETVLQYINEF-VQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILV-TR 311 (961)
Q Consensus 242 ~~~il~~l~~~~--------~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilv-Tt 311 (961)
-..+........ ....+..++.+.+... ..++.-++|+|++. .-+.+.++.+...+........+|. ||
T Consensus 81 C~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah-~Ls~~A~NALLKtLEEPp~~viFILaTt 159 (484)
T PRK14956 81 CLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVH-MLTDQSFNALLKTLEEPPAHIVFILATT 159 (484)
T ss_pred HHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechh-hcCHHHHHHHHHHhhcCCCceEEEeecC
Confidence 111111111000 0111222222222221 24566799999997 5667788888877766444555444 44
Q ss_pred CCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchH
Q 037574 312 RGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPF 382 (961)
Q Consensus 312 R~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PL 382 (961)
....+...+.. +...+.+.+++.++..+.+.+.+...+.. --.+....|++.++|.+-
T Consensus 160 e~~kI~~TI~S---------RCq~~~f~~ls~~~i~~~L~~i~~~Egi~----~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 160 EFHKIPETILS---------RCQDFIFKKVPLSVLQDYSEKLCKIENVQ----YDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred ChhhccHHHHh---------hhheeeecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCChHH
Confidence 44444332221 22789999999999999998876433221 123467889999999984
No 74
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=2e-05 Score=91.02 Aligned_cols=183 Identities=14% Similarity=0.178 Sum_probs=109.5
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhh-------------------cc
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVK-------------------AN 223 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~ 223 (961)
.+++|.+..+..|..++... .-...+.++|+.|+||||+|+.+.+.-.-. +.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~---------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~ 86 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEG---------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGR 86 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcC---------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccC
Confidence 36899999999999998863 224578999999999999999987731100 00
Q ss_pred CceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-HhcCCceEEEeecccCCCChhhHHHHHHhccCCC
Q 037574 224 FDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINE-FVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGS 302 (961)
Q Consensus 224 F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~ 302 (961)
|..++.+..+....+ .+..++...... -..+++-++|+|++. ..+......+...+....
T Consensus 87 ~~DvlEidaAs~~gV------------------d~IRelle~a~~~P~~gk~KVIIIDEad-~Ls~~A~NALLKtLEEPp 147 (709)
T PRK08691 87 YVDLLEIDAASNTGI------------------DNIREVLENAQYAPTAGKYKVYIIDEVH-MLSKSAFNAMLKTLEEPP 147 (709)
T ss_pred ccceEEEeccccCCH------------------HHHHHHHHHHHhhhhhCCcEEEEEECcc-ccCHHHHHHHHHHHHhCC
Confidence 111122221111111 111111111111 123566799999996 445555666777776544
Q ss_pred CCcEEEEecCCC-cccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCch
Q 037574 303 EGSRILVTRRGE-KNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLP 381 (961)
Q Consensus 303 ~gs~ilvTtR~~-~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~P 381 (961)
..+++|++|.+. .+...+. ++...+.+.+++.++....+.+.+-..+... -.+..+.|++.++|.+
T Consensus 148 ~~v~fILaTtd~~kL~~TIr---------SRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i----d~eAL~~Ia~~A~Gsl 214 (709)
T PRK08691 148 EHVKFILATTDPHKVPVTVL---------SRCLQFVLRNMTAQQVADHLAHVLDSEKIAY----EPPALQLLGRAAAGSM 214 (709)
T ss_pred CCcEEEEEeCCccccchHHH---------HHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHHhCCCH
Confidence 556666666433 3322211 1226788999999999999988764433221 2345788999999998
Q ss_pred HHHHH
Q 037574 382 FAVKI 386 (961)
Q Consensus 382 Lai~~ 386 (961)
--+..
T Consensus 215 RdAln 219 (709)
T PRK08691 215 RDALS 219 (709)
T ss_pred HHHHH
Confidence 54433
No 75
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=2.6e-05 Score=90.58 Aligned_cols=194 Identities=15% Similarity=0.195 Sum_probs=112.8
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVA 242 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 242 (961)
.+++|.+..+..+...+... .-...+.++|..|+||||+|+.+.+..--...+ .+..+..-...
T Consensus 16 ~divGQe~vv~~L~~~l~~~---------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~-------~~~pCg~C~~C 79 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLG---------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGI-------TATPCGECDNC 79 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcC---------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCC-------CCCCCCCCHHH
Confidence 36899999999998888752 223557899999999999999997731111000 00011111111
Q ss_pred HHHHHH-------hcCCC-CCcccHHHHHHHHHH-HhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCC
Q 037574 243 KAILES-------LKGSV-SSQVEMETVLQYINE-FVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRG 313 (961)
Q Consensus 243 ~~il~~-------l~~~~-~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 313 (961)
+.|... +.... ....+..++.+.+.. -..+++-++|+|++. ..+....+.+...+.......++|++|.+
T Consensus 80 ~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah-~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~ 158 (647)
T PRK07994 80 REIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVH-MLSRHSFNALLKTLEEPPEHVKFLLATTD 158 (647)
T ss_pred HHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechH-hCCHHHHHHHHHHHHcCCCCeEEEEecCC
Confidence 111110 00000 011112222222221 124677799999997 55667788888888776556666555544
Q ss_pred -Cccccc-ccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHH
Q 037574 314 -EKNGTN-MTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKIL 387 (961)
Q Consensus 314 -~~v~~~-~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~ 387 (961)
..+... ... ...+.+.+++.++....+.+..-..... .-.+....|++.++|.+--+..+
T Consensus 159 ~~kLl~TI~SR----------C~~~~f~~Ls~~ei~~~L~~il~~e~i~----~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 159 PQKLPVTILSR----------CLQFHLKALDVEQIRQQLEHILQAEQIP----FEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred ccccchHHHhh----------heEeeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 433322 222 2889999999999999998765322211 12345677899999988644433
No 76
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.26 E-value=2.1e-06 Score=91.95 Aligned_cols=91 Identities=15% Similarity=0.183 Sum_probs=62.5
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCC--CHHHHHHHHHHHhcCCCCCcccHH------HHH
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPR--DEIRVAKAILESLKGSVSSQVEME------TVL 263 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~il~~l~~~~~~~~~~~------~~~ 263 (961)
+.-....|+|++|+||||||+.||++.... +|+.++||.+++.+ ++.++++.+...+-....+..... ...
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~i 245 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVI 245 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHH
Confidence 344678999999999999999999964444 89999999999887 777788877643322222221111 111
Q ss_pred HHHHHH-hcCCceEEEeeccc
Q 037574 264 QYINEF-VQGKKVLLVLDDVW 283 (961)
Q Consensus 264 ~~l~~~-l~~kr~LlVlDdvw 283 (961)
+.-... -.|++++|++|++.
T Consensus 246 e~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 246 EKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHHcCCCEEEEEEChH
Confidence 111121 26899999999994
No 77
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.25 E-value=3e-05 Score=77.51 Aligned_cols=91 Identities=11% Similarity=0.124 Sum_probs=63.9
Q ss_pred CCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCC-cccccccccccccCCCCCcceeecCCCChHHHHHHH
Q 037574 272 GKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGE-KNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLF 350 (961)
Q Consensus 272 ~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf 350 (961)
+.+-++|+||+. .-..+..+.+...+......+.+|++|++. .+...+. .+...+.+.+++.++..+.+
T Consensus 95 ~~~kviiide~~-~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~---------sr~~~~~~~~~~~~~~~~~l 164 (188)
T TIGR00678 95 SGRRVVIIEDAE-RMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIR---------SRCQVLPFPPLSEEALLQWL 164 (188)
T ss_pred CCeEEEEEechh-hhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHH---------hhcEEeeCCCCCHHHHHHHH
Confidence 566789999995 445667788888887766666777766544 2222111 12278999999999999988
Q ss_pred HHHHcCCCCCCCccchHHHHHHHHHhcCCchH
Q 037574 351 RQIAFDGRSSDDREKFEPIGRLVVGKCKGLPF 382 (961)
Q Consensus 351 ~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PL 382 (961)
.+. + . + .+.+..|++.++|.|.
T Consensus 165 ~~~--g--i--~----~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 165 IRQ--G--I--S----EEAAELLLALAGGSPG 186 (188)
T ss_pred HHc--C--C--C----HHHHHHHHHHcCCCcc
Confidence 876 1 1 1 3468889999999885
No 78
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=3.4e-05 Score=87.75 Aligned_cols=194 Identities=16% Similarity=0.176 Sum_probs=111.1
Q ss_pred ccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCce-eEEEEeCCCCCHHHHH
Q 037574 164 EFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDK-RIWVSASCPRDEIRVA 242 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~~~~~~~~ 242 (961)
+++|.+.....+...+... .-.+.+.++|+.|+||||+|+.+++.-.-...... -.+.. +..-...
T Consensus 22 dliGq~~vv~~L~~ai~~~---------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~----C~~C~~C 88 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILND---------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT----CEQCTNC 88 (507)
T ss_pred HhcCcHHHHHHHHHHHHcC---------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC----CCCChHH
Confidence 5789999888888777652 22467889999999999999999873211100000 00000 0000001
Q ss_pred HHHHHHhcC-----CCCCcccHHHHHHHHHH----HhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEE-ecC
Q 037574 243 KAILESLKG-----SVSSQVEMETVLQYINE----FVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILV-TRR 312 (961)
Q Consensus 243 ~~il~~l~~-----~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR 312 (961)
..+...... +.......+++...+.. -..+++-++|+|+++ ..+...++.+...+......+.+|+ ||+
T Consensus 89 ~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~-~Ls~~a~naLLk~LEepp~~~vfI~aTte 167 (507)
T PRK06645 89 ISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVH-MLSKGAFNALLKTLEEPPPHIIFIFATTE 167 (507)
T ss_pred HHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChh-hcCHHHHHHHHHHHhhcCCCEEEEEEeCC
Confidence 111100000 00011122222222221 124677799999997 5566778888888877656666655 444
Q ss_pred CCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHH
Q 037574 313 GEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAV 384 (961)
Q Consensus 313 ~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai 384 (961)
...+...+. .+...+++.+++.++....+.+.+...+... -.+....|++.++|.+--+
T Consensus 168 ~~kI~~tI~---------SRc~~~ef~~ls~~el~~~L~~i~~~egi~i----e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 168 VQKIPATII---------SRCQRYDLRRLSFEEIFKLLEYITKQENLKT----DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred hHHhhHHHH---------hcceEEEccCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 444333221 1227799999999999999998875433221 2345677899999987433
No 79
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=2.8e-05 Score=87.68 Aligned_cols=182 Identities=16% Similarity=0.165 Sum_probs=112.9
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCCh------------------hhh-cc
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDS------------------DVK-AN 223 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~------------------~~~-~~ 223 (961)
.+++|.+...+.+...+... .-...+.++|+.|+||||+|+.+.+.- .+. ..
T Consensus 13 ~dliGQe~vv~~L~~a~~~~---------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~ 83 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLN---------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSN 83 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcC---------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccC
Confidence 36899998888888877652 223578999999999999999887510 000 11
Q ss_pred CceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCC
Q 037574 224 FDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSE 303 (961)
Q Consensus 224 F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~ 303 (961)
+.-++.++.+....++. .+++++..... -..+++-++|+|++. ..+....+.+...+.....
T Consensus 84 ~~Dv~eidaas~~~vdd-IR~Iie~~~~~----------------P~~~~~KVvIIDEah-~Ls~~A~NaLLK~LEePp~ 145 (491)
T PRK14964 84 HPDVIEIDAASNTSVDD-IKVILENSCYL----------------PISSKFKVYIIDEVH-MLSNSAFNALLKTLEEPAP 145 (491)
T ss_pred CCCEEEEecccCCCHHH-HHHHHHHHHhc----------------cccCCceEEEEeChH-hCCHHHHHHHHHHHhCCCC
Confidence 22234444433332222 22233222110 123566789999996 5556677788888877666
Q ss_pred CcEEEEecC-CCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchH
Q 037574 304 GSRILVTRR-GEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPF 382 (961)
Q Consensus 304 gs~ilvTtR-~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PL 382 (961)
.+++|++|. ...+...+. .+...+++.+++.++....+.+.+...+..- -.+....|++.++|.+-
T Consensus 146 ~v~fIlatte~~Kl~~tI~---------SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i----~~eAL~lIa~~s~GslR 212 (491)
T PRK14964 146 HVKFILATTEVKKIPVTII---------SRCQRFDLQKIPTDKLVEHLVDIAKKENIEH----DEESLKLIAENSSGSMR 212 (491)
T ss_pred CeEEEEEeCChHHHHHHHH---------HhheeeecccccHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHH
Confidence 677666653 333332221 1227899999999999999988775433221 23456778999999875
Q ss_pred HH
Q 037574 383 AV 384 (961)
Q Consensus 383 ai 384 (961)
.+
T Consensus 213 ~a 214 (491)
T PRK14964 213 NA 214 (491)
T ss_pred HH
Confidence 33
No 80
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.25 E-value=1.7e-05 Score=81.99 Aligned_cols=154 Identities=17% Similarity=0.137 Sum_probs=89.6
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCC
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGK 273 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 273 (961)
...+.|+|+.|+|||+|++.+++. ....-..+.++++..... ...+..+.+. .
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~--------------------~~~~~~~~~~----~- 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW--------------------FVPEVLEGME----Q- 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh--------------------hhHHHHHHhh----h-
Confidence 457899999999999999999984 332333456666532100 0011111111 1
Q ss_pred ceEEEeecccCCCChhhHHH-HHHhccC-CCCC-cEEEEecCCCccc---------ccccccccccCCCCCcceeecCCC
Q 037574 274 KVLLVLDDVWWNACPRYWEQ-LMYSLKS-GSEG-SRILVTRRGEKNG---------TNMTEIGLGEKDGTNMTEIGLGEL 341 (961)
Q Consensus 274 r~LlVlDdvw~~~~~~~~~~-l~~~l~~-~~~g-s~ilvTtR~~~v~---------~~~~~~~~~~~~~~~~~~~~l~~L 341 (961)
--+|++||+..-.....|+. +...+.. ...| .++|+||+...-. ..+... .+++++++
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g----------~~~~l~~~ 167 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWG----------QIYKLQPL 167 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCC----------ceeeecCC
Confidence 24889999952122244543 3233322 1123 4789998855211 112111 68999999
Q ss_pred ChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHHH
Q 037574 342 SAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKILG 388 (961)
Q Consensus 342 ~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~~ 388 (961)
++++-.+++++.+....- .--+++..-|++.+.|..-++..+-
T Consensus 168 ~~~~~~~~l~~~a~~~~~----~l~~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 168 SDEEKLQALQLRARLRGF----ELPEDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred CHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHhhcCCHHHHHHHH
Confidence 999999999886643221 2224567778888887765544433
No 81
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=2.5e-07 Score=97.63 Aligned_cols=151 Identities=17% Similarity=0.131 Sum_probs=104.1
Q ss_pred CCCccEEEEEeccCCCCCc--ccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccch--
Q 037574 547 HEKFPHLMITFESDQGAFP--NSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPK-- 622 (961)
Q Consensus 547 ~~~~r~l~l~~~~~~~~~~--~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~-- 622 (961)
..++|.+++.++.... .+ .....|+++|.|+++.|- +.....+..+..+|++|+.|+|+.|. +....+
T Consensus 120 ~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~Nr------l~~~~~s~ 191 (505)
T KOG3207|consen 120 LKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSSNR------LSNFISSN 191 (505)
T ss_pred HHhhhheeecCccccc-cchhhhhhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhccccccc------ccCCcccc
Confidence 4577888888777632 12 356789999999999875 12223345667899999999999984 222111
Q ss_pred hhcCCCCcceEeccCCCCcc--cCCcchhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcccccCCc--CCCCC
Q 037574 623 QIKRLIHLRYLNLSKNNKIK--KLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLSYMPK--GIERW 698 (961)
Q Consensus 623 ~i~~l~~Lr~L~L~~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~~~p~--~i~~L 698 (961)
.-..+.+|+.|.|+.|+ +. ++-...-.+++|+.|+|.+|..+..--....-+..|+.|+|++|++..++. .++.+
T Consensus 192 ~~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l 270 (505)
T KOG3207|consen 192 TTLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTL 270 (505)
T ss_pred chhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccc
Confidence 12367899999999998 54 333445678999999999986333322334457889999999988887773 36666
Q ss_pred CCCCcCCc
Q 037574 699 SCLRTLSE 706 (961)
Q Consensus 699 ~~L~~L~~ 706 (961)
+.|..|..
T Consensus 271 ~~L~~Lnl 278 (505)
T KOG3207|consen 271 PGLNQLNL 278 (505)
T ss_pred cchhhhhc
Confidence 66666653
No 82
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=4.2e-05 Score=83.92 Aligned_cols=196 Identities=13% Similarity=0.120 Sum_probs=115.5
Q ss_pred CCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeE------EEEeCCC
Q 037574 162 PLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRI------WVSASCP 235 (961)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~------wv~~s~~ 235 (961)
-.+++|.+...+.+.+.+... .-...+.++|+.|+||+|+|..+.+.---........ =..+...
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~---------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~ 88 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSG---------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPD 88 (365)
T ss_pred hhhccChHHHHHHHHHHHHcC---------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCC
Confidence 346899999999999988763 2345789999999999999988866210000000000 0000000
Q ss_pred CCHHHHHHHHHHHhcC----------C----CCCcccHHHHHHHHHHHh-----cCCceEEEeecccCCCChhhHHHHHH
Q 037574 236 RDEIRVAKAILESLKG----------S----VSSQVEMETVLQYINEFV-----QGKKVLLVLDDVWWNACPRYWEQLMY 296 (961)
Q Consensus 236 ~~~~~~~~~il~~l~~----------~----~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~~~~~l~~ 296 (961)
+ ...+.|...-.. . ......+++ ++.+.+.+ .+.+.++|+||+. ..+......+..
T Consensus 89 c---~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead-~m~~~aanaLLK 163 (365)
T PRK07471 89 H---PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTAD-EMNANAANALLK 163 (365)
T ss_pred C---hHHHHHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechH-hcCHHHHHHHHH
Confidence 0 011111100000 0 001123344 23333433 2567799999996 566777888888
Q ss_pred hccCCCCCcEEEEecCCCc-ccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHH
Q 037574 297 SLKSGSEGSRILVTRRGEK-NGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVG 375 (961)
Q Consensus 297 ~l~~~~~gs~ilvTtR~~~-v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~ 375 (961)
.+.....++.+|++|.+.. +...+ .++...+.+.+++.++..+++.+.... . + .+....+++
T Consensus 164 ~LEepp~~~~~IL~t~~~~~llpti---------~SRc~~i~l~~l~~~~i~~~L~~~~~~----~--~--~~~~~~l~~ 226 (365)
T PRK07471 164 VLEEPPARSLFLLVSHAPARLLPTI---------RSRCRKLRLRPLAPEDVIDALAAAGPD----L--P--DDPRAALAA 226 (365)
T ss_pred HHhcCCCCeEEEEEECCchhchHHh---------hccceEEECCCCCHHHHHHHHHHhccc----C--C--HHHHHHHHH
Confidence 8877666777777776654 22111 123388999999999999999876311 1 0 112267899
Q ss_pred hcCCchHHHHHHH
Q 037574 376 KCKGLPFAVKILG 388 (961)
Q Consensus 376 ~c~G~PLai~~~~ 388 (961)
.++|.|..+..+.
T Consensus 227 ~s~Gsp~~Al~ll 239 (365)
T PRK07471 227 LAEGSVGRALRLA 239 (365)
T ss_pred HcCCCHHHHHHHh
Confidence 9999998666554
No 83
>PRK09087 hypothetical protein; Validated
Probab=98.22 E-value=1.7e-05 Score=81.18 Aligned_cols=142 Identities=17% Similarity=0.177 Sum_probs=85.1
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCC
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGK 273 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 273 (961)
.+.+.|+|+.|+|||+|++.+++.. ...+++.. .+..+++..+ .+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~------~~~~~~~~~~---------------------~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS-------DALLIHPN------EIGSDAANAA---------------------AE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc-------CCEEecHH------HcchHHHHhh---------------------hc-
Confidence 4679999999999999999988742 12244421 1111111111 11
Q ss_pred ceEEEeecccCC-CChhhHHHHHHhccCCCCCcEEEEecCCC---------cccccccccccccCCCCCcceeecCCCCh
Q 037574 274 KVLLVLDDVWWN-ACPRYWEQLMYSLKSGSEGSRILVTRRGE---------KNGTNMTEIGLGEKDGTNMTEIGLGELSA 343 (961)
Q Consensus 274 r~LlVlDdvw~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~~---------~v~~~~~~~~~~~~~~~~~~~~~l~~L~~ 343 (961)
-+|++||+..- .+.+.+..+...+. ..|..||+|++.. .+...+... ..+++++++.
T Consensus 89 -~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~g----------l~~~l~~pd~ 155 (226)
T PRK09087 89 -GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAA----------TVVEIGEPDD 155 (226)
T ss_pred -CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCC----------ceeecCCCCH
Confidence 27888999511 12222333332222 2356788888742 222222222 7899999999
Q ss_pred HHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHH
Q 037574 344 KECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKIL 387 (961)
Q Consensus 344 ~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~ 387 (961)
++-.+++++.+-...- .--+++..-|++.+.|..-++..+
T Consensus 156 e~~~~iL~~~~~~~~~----~l~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 156 ALLSQVIFKLFADRQL----YVDPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHHHHHHHHHHHHcCC----CCCHHHHHHHHHHhhhhHHHHHHH
Confidence 9999999998743221 122456777888888877666543
No 84
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=5e-05 Score=82.80 Aligned_cols=196 Identities=13% Similarity=0.185 Sum_probs=117.1
Q ss_pred CCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhcc----CceeEEEEeCCCCC
Q 037574 162 PLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKAN----FDKRIWVSASCPRD 237 (961)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~ 237 (961)
-..++|-+.....+...+... .-...+.|+|+.|+||||+|..+.+. +-.+ +... .....+.
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~g---------rl~ha~L~~G~~G~GKttlA~~lA~~--Llc~~~~~~~~~---~~~~~~~ 87 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREG---------KLHHALLFEGPEGIGKATLAFHLANH--ILSHPDPAEAPE---TLADPDP 87 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcC---------CCCeeEeeECCCCCCHHHHHHHHHHH--HcCCCccccCcc---ccCCCCC
Confidence 346899999999999988763 23457899999999999999988773 2110 1111 0001111
Q ss_pred HHHHHHHHHHH-------hcCC--C-----CCcccHHHHHHHHHHHh-----cCCceEEEeecccCCCChhhHHHHHHhc
Q 037574 238 EIRVAKAILES-------LKGS--V-----SSQVEMETVLQYINEFV-----QGKKVLLVLDDVWWNACPRYWEQLMYSL 298 (961)
Q Consensus 238 ~~~~~~~il~~-------l~~~--~-----~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~~~~~l~~~l 298 (961)
.....+.+... +... . ......+++. .+.+++ .+++-++|+|++. .-+....+.+...+
T Consensus 88 ~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd-~l~~~aanaLLk~L 165 (351)
T PRK09112 88 ASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPAD-DMNRNAANAILKTL 165 (351)
T ss_pred CCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchh-hcCHHHHHHHHHHH
Confidence 11122222221 1000 0 0112234432 344443 3567799999996 55667777788888
Q ss_pred cCCCCCcEEEEec-CCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhc
Q 037574 299 KSGSEGSRILVTR-RGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKC 377 (961)
Q Consensus 299 ~~~~~gs~ilvTt-R~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c 377 (961)
........+|++| +...+...+ .++...+.+.+++.++..+++.+.+.... .-.+.+..|++.+
T Consensus 166 EEpp~~~~fiLit~~~~~llptI---------rSRc~~i~l~pl~~~~~~~~L~~~~~~~~------~~~~~~~~i~~~s 230 (351)
T PRK09112 166 EEPPARALFILISHSSGRLLPTI---------RSRCQPISLKPLDDDELKKALSHLGSSQG------SDGEITEALLQRS 230 (351)
T ss_pred hcCCCCceEEEEECChhhccHHH---------HhhccEEEecCCCHHHHHHHHHHhhcccC------CCHHHHHHHHHHc
Confidence 7655555555544 433332221 12337899999999999999988432111 1133467889999
Q ss_pred CCchHHHHHHH
Q 037574 378 KGLPFAVKILG 388 (961)
Q Consensus 378 ~G~PLai~~~~ 388 (961)
+|.|..+..+.
T Consensus 231 ~G~pr~Al~ll 241 (351)
T PRK09112 231 KGSVRKALLLL 241 (351)
T ss_pred CCCHHHHHHHH
Confidence 99998666554
No 85
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=3.3e-05 Score=89.65 Aligned_cols=197 Identities=14% Similarity=0.160 Sum_probs=111.1
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhcc--CceeEEEEeCCCCCHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKAN--FDKRIWVSASCPRDEIR 240 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~s~~~~~~~ 240 (961)
.+++|-+..+..|..++... .-...+.++|+.|+||||+|+.+.+.-.-... ..... ...+..-.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~---------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~----~~pCg~C~ 82 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQ---------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT----ATPCGVCQ 82 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcC---------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC----CCCCCccH
Confidence 35899998888888888763 23467789999999999999999552100000 00000 00111111
Q ss_pred HHHHHHHHhc-----CCCCCcccHHHHHHHHHHH----hcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEec
Q 037574 241 VAKAILESLK-----GSVSSQVEMETVLQYINEF----VQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTR 311 (961)
Q Consensus 241 ~~~~il~~l~-----~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTt 311 (961)
.-+.|...-. .+.......+++.+.+... ..++.-++|+|++. ..+...+..+...+.......++|++|
T Consensus 83 ~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh-~Ls~~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 83 ACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVH-MLTNTAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred HHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChh-hCCHHHHHHHHHhcccCCCCeEEEEEE
Confidence 1111100000 0000111222222222211 13455689999997 566777888888887755566666555
Q ss_pred -CCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHH
Q 037574 312 -RGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKI 386 (961)
Q Consensus 312 -R~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~ 386 (961)
....+...+. .+...+++++++.++....+.+.+...+... -.+....|++.++|.+--+..
T Consensus 162 td~~kil~TIl---------SRc~~~~f~~Ls~eei~~~L~~i~~~egi~i----e~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 162 TDPQKVPVTVL---------SRCLQFNLRPMAPETVLEHLTQVLAAENVPA----EPQALRLLARAARGSMRDALS 224 (618)
T ss_pred CCchhhhHHHH---------HhceeeecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 4333322221 1228899999999999999988764333221 234567889999998754443
No 86
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.20 E-value=3.9e-05 Score=78.27 Aligned_cols=170 Identities=12% Similarity=0.192 Sum_probs=93.4
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccC-c-eeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANF-D-KRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFV 270 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~-~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 270 (961)
....+.|+|..|+|||+|.+.+++. ..... + .+++++ ..++...+...+.... ...+.+.+
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~~---------~~~~~~~~ 95 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLS------AEEFIREFADALRDGE---------IEEFKDRL 95 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEE------HHHHHHHHHHHHHTTS---------HHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceeec------HHHHHHHHHHHHHccc---------chhhhhhh
Confidence 4556899999999999999999994 43322 2 355554 4566666666664421 12333444
Q ss_pred cCCceEEEeecccCCCChhhHHH-HHHhccC-CCCCcEEEEecCCC-cccccccccccccCCCCCcceeecCCCChHHHH
Q 037574 271 QGKKVLLVLDDVWWNACPRYWEQ-LMYSLKS-GSEGSRILVTRRGE-KNGTNMTEIGLGEKDGTNMTEIGLGELSAKECR 347 (961)
Q Consensus 271 ~~kr~LlVlDdvw~~~~~~~~~~-l~~~l~~-~~~gs~ilvTtR~~-~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~ 347 (961)
++ -=+|++||++.-.....|.. +...+.. ...|-+||+|++.. .-...+... +. .+-.....+++++.++++-.
T Consensus 96 ~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~-L~-SRl~~Gl~~~l~~pd~~~r~ 172 (219)
T PF00308_consen 96 RS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPD-LR-SRLSWGLVVELQPPDDEDRR 172 (219)
T ss_dssp CT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HH-HH-HHHHCSEEEEE----HHHHH
T ss_pred hc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChh-hh-hhHhhcchhhcCCCCHHHHH
Confidence 43 34889999963233334443 3333332 13466899999543 211111110 00 00001168999999999999
Q ss_pred HHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHH
Q 037574 348 SLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKI 386 (961)
Q Consensus 348 ~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~ 386 (961)
+++++.+....-. --++++.-|++.+.+..-.+..
T Consensus 173 ~il~~~a~~~~~~----l~~~v~~~l~~~~~~~~r~L~~ 207 (219)
T PF00308_consen 173 RILQKKAKERGIE----LPEEVIEYLARRFRRDVRELEG 207 (219)
T ss_dssp HHHHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHH
T ss_pred HHHHHHHHHhCCC----CcHHHHHHHHHhhcCCHHHHHH
Confidence 9999987533321 2245667777777665544433
No 87
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=3.4e-05 Score=88.28 Aligned_cols=196 Identities=15% Similarity=0.165 Sum_probs=110.5
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVA 242 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 242 (961)
.+++|++..++.+..++... .-.+.+.++|+.|+||||+|+.+.+. +. |.-|... ..+..-...
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~---------rl~hA~Lf~GP~GvGKTTlA~~lAk~--L~----C~~~~~~-~~Cg~C~sC 79 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNN---------KLTHAYIFSGPRGIGKTSIAKIFAKA--IN----CLNPKDG-DCCNSCSVC 79 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcC---------CCCceEEEECCCCCCHHHHHHHHHHH--hc----CCCCCCC-CCCcccHHH
Confidence 46899999999999988653 22467889999999999999999773 11 1112111 011111111
Q ss_pred HHHHHHhcCC-----CCCcccHH---HHHHHHHHH-hcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecC-
Q 037574 243 KAILESLKGS-----VSSQVEME---TVLQYINEF-VQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRR- 312 (961)
Q Consensus 243 ~~il~~l~~~-----~~~~~~~~---~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR- 312 (961)
+.+....... .......+ ++...+... ..+++-++|+|++. .-+...+..+...+......+.+|++|.
T Consensus 80 r~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad-~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~ 158 (605)
T PRK05896 80 ESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAH-MLSTSAWNALLKTLEEPPKHVVFIFATTE 158 (605)
T ss_pred HHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechH-hCCHHHHHHHHHHHHhCCCcEEEEEECCC
Confidence 1111111000 00011122 222222111 12344579999996 4455677788888776555566655553
Q ss_pred CCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchH-HHHHHH
Q 037574 313 GEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPF-AVKILG 388 (961)
Q Consensus 313 ~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PL-ai~~~~ 388 (961)
...+...+. .+...+++.+++.++....+...+...+... -.+.+..|++.++|.+- |+..+-
T Consensus 159 ~~KLl~TI~---------SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I----s~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 159 FQKIPLTII---------SRCQRYNFKKLNNSELQELLKSIAKKEKIKI----EDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred hHhhhHHHH---------hhhhhcccCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCcHHHHHHHHH
Confidence 323322111 1127899999999999998888664322111 13457788999999764 444443
No 88
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=2.5e-05 Score=88.58 Aligned_cols=187 Identities=18% Similarity=0.205 Sum_probs=106.6
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhc-------------------c
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKA-------------------N 223 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~ 223 (961)
.+++|.+.....+...+... .-.+.+.++|++|+||||+|+.+++...-.. .
T Consensus 14 ~divGq~~i~~~L~~~i~~~---------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~ 84 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKN---------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGT 84 (472)
T ss_pred HHccCcHHHHHHHHHHHHcC---------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCC
Confidence 46899988888887777652 2235688999999999999999977311100 0
Q ss_pred CceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-HhcCCceEEEeecccCCCChhhHHHHHHhccCCC
Q 037574 224 FDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINE-FVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGS 302 (961)
Q Consensus 224 F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~ 302 (961)
+..++.+..+.......+ +.+.+. ... ...+++-++|+|+++ .-.....+.+...+....
T Consensus 85 ~~dv~el~aa~~~gid~i-R~i~~~-----------------~~~~p~~~~~kVvIIDE~h-~Lt~~a~~~LLk~LE~p~ 145 (472)
T PRK14962 85 FMDVIELDAASNRGIDEI-RKIRDA-----------------VGYRPMEGKYKVYIIDEVH-MLTKEAFNALLKTLEEPP 145 (472)
T ss_pred CCccEEEeCcccCCHHHH-HHHHHH-----------------HhhChhcCCeEEEEEEChH-HhHHHHHHHHHHHHHhCC
Confidence 111222222211111111 122111 111 123566799999995 333445566666666544
Q ss_pred CCcEEEEecCC-CcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCc-
Q 037574 303 EGSRILVTRRG-EKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGL- 380 (961)
Q Consensus 303 ~gs~ilvTtR~-~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~- 380 (961)
....+|++|.+ ..+...+. .+...+.+.+++.++....+.+.+...+..- -.+....|++.++|.
T Consensus 146 ~~vv~Ilattn~~kl~~~L~---------SR~~vv~f~~l~~~el~~~L~~i~~~egi~i----~~eal~~Ia~~s~Gdl 212 (472)
T PRK14962 146 SHVVFVLATTNLEKVPPTII---------SRCQVIEFRNISDELIIKRLQEVAEAEGIEI----DREALSFIAKRASGGL 212 (472)
T ss_pred CcEEEEEEeCChHhhhHHHh---------cCcEEEEECCccHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHhCCCH
Confidence 44444444433 33322221 2237899999999999999888764322211 234567788877654
Q ss_pred hHHHHHHHhh
Q 037574 381 PFAVKILGSL 390 (961)
Q Consensus 381 PLai~~~~~~ 390 (961)
+.|+..+-.+
T Consensus 213 R~aln~Le~l 222 (472)
T PRK14962 213 RDALTMLEQV 222 (472)
T ss_pred HHHHHHHHHH
Confidence 5666666543
No 89
>PRK05642 DNA replication initiation factor; Validated
Probab=98.19 E-value=2.9e-05 Score=80.21 Aligned_cols=163 Identities=15% Similarity=0.158 Sum_probs=91.7
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCC
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGK 273 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 273 (961)
...+.|+|..|+|||+|++.+++. ....-..++|++.. ++... .. .+.+.+.+-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~------~~~~~--------------~~----~~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLA------ELLDR--------------GP----ELLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHH------HHHhh--------------hH----HHHHhhhhC
Confidence 367899999999999999999873 32222356677643 22111 01 122223222
Q ss_pred ceEEEeecccCCCChhhHHH-HHHhccC-CCCCcEEEEecCCCcc-cccccccccccCCCCCcceeecCCCChHHHHHHH
Q 037574 274 KVLLVLDDVWWNACPRYWEQ-LMYSLKS-GSEGSRILVTRRGEKN-GTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLF 350 (961)
Q Consensus 274 r~LlVlDdvw~~~~~~~~~~-l~~~l~~-~~~gs~ilvTtR~~~v-~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf 350 (961)
. +||+||+........|+. +...+.. ...|..||+|++.... ....... + ..+-.....+++++++.++-.+++
T Consensus 99 d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~-L-~SRl~~gl~~~l~~~~~e~~~~il 175 (234)
T PRK05642 99 E-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPD-L-KSRLTLALVFQMRGLSDEDKLRAL 175 (234)
T ss_pred C-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCcc-H-HHHHhcCeeeecCCCCHHHHHHHH
Confidence 2 688999952222235544 4444432 2346678888874331 1110000 0 000001167889999999999999
Q ss_pred HHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHHHh
Q 037574 351 RQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKILGS 389 (961)
Q Consensus 351 ~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~~~ 389 (961)
++++....- .--.++..-|++.+.|..-.+..+-.
T Consensus 176 ~~ka~~~~~----~l~~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 176 QLRASRRGL----HLTDEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred HHHHHHcCC----CCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 966643221 11146778888888887655544433
No 90
>PF14516 AAA_35: AAA-like domain
Probab=98.19 E-value=0.00039 Score=75.90 Aligned_cols=210 Identities=13% Similarity=0.149 Sum_probs=122.9
Q ss_pred cCCCCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCC---
Q 037574 159 AIDPLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCP--- 235 (961)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--- 235 (961)
+.+.+.+|.|...-+++.+.+.. .-..+.|.|+-.+|||+|...+.+..+. ..+ .++++++...
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~-----------~G~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~ 73 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQ-----------PGSYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSA 73 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhc-----------CCCEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCc
Confidence 34556688999667777777764 2358999999999999999999884332 234 4557775541
Q ss_pred --CCHHHHHHHHHHHhcC----CCC-------CcccHHHHHHHHHHHh---cCCceEEEeecccCCCC-h----hhHHHH
Q 037574 236 --RDEIRVAKAILESLKG----SVS-------SQVEMETVLQYINEFV---QGKKVLLVLDDVWWNAC-P----RYWEQL 294 (961)
Q Consensus 236 --~~~~~~~~~il~~l~~----~~~-------~~~~~~~~~~~l~~~l---~~kr~LlVlDdvw~~~~-~----~~~~~l 294 (961)
.+....++.+...+.. ... ...........+.+.+ .+++.+|++|++..-.+ . +-+..+
T Consensus 74 ~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~L 153 (331)
T PF14516_consen 74 IFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLL 153 (331)
T ss_pred ccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHH
Confidence 2455555555555433 210 0112233444455543 26899999999942111 1 122223
Q ss_pred HHhccCCC----CCcEEEEecCCCcccccc--cccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHH
Q 037574 295 MYSLKSGS----EGSRILVTRRGEKNGTNM--TEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEP 368 (961)
Q Consensus 295 ~~~l~~~~----~gs~ilvTtR~~~v~~~~--~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~ 368 (961)
+....... ..+-.+|...+....... ...++ .-...+.|++++.+|...|.+++...-. ..
T Consensus 154 R~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPF-----NIg~~i~L~~Ft~~ev~~L~~~~~~~~~--------~~ 220 (331)
T PF14516_consen 154 RSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPF-----NIGQPIELPDFTPEEVQELAQRYGLEFS--------QE 220 (331)
T ss_pred HHHHHhcccCcccceEEEEEecCcccccccCCCCCCc-----ccccceeCCCCCHHHHHHHHHhhhccCC--------HH
Confidence 32222111 122223333322211111 11111 1125789999999999999988743211 11
Q ss_pred HHHHHHHhcCCchHHHHHHHhhccCC
Q 037574 369 IGRLVVGKCKGLPFAVKILGSLLRFK 394 (961)
Q Consensus 369 ~~~~I~~~c~G~PLai~~~~~~l~~~ 394 (961)
..++|...+||+|.-+..++..+..+
T Consensus 221 ~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 221 QLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 27889999999999999999998653
No 91
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.18 E-value=9.7e-07 Score=100.06 Aligned_cols=103 Identities=38% Similarity=0.555 Sum_probs=86.3
Q ss_pred hccCCcccEEEccCCChhhhhhhcccchhhcCCC-CcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccccccc
Q 037574 595 FDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRLI-HLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQGMG 673 (961)
Q Consensus 595 ~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~-~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~ 673 (961)
...+..+..|++.++. +..+|..++.+. +|++|++++|. +..+|..++.+++|+.|++++|. +..+|...+
T Consensus 112 ~~~~~~l~~L~l~~n~------i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~ 183 (394)
T COG4886 112 LLELTNLTSLDLDNNN------ITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND-LSDLPKLLS 183 (394)
T ss_pred hhcccceeEEecCCcc------cccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch-hhhhhhhhh
Confidence 4456789999999883 888888888885 99999999998 99998889999999999999987 888988887
Q ss_pred cCCCCcEEEeCCcccccCCcCCCCCCCCCcCC
Q 037574 674 KLINLRHVVNVGTPLSYMPKGIERWSCLRTLS 705 (961)
Q Consensus 674 ~L~~L~~L~l~~~~l~~~p~~i~~L~~L~~L~ 705 (961)
.+++|+.|++++|++..+|..++.+..|++|.
T Consensus 184 ~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~ 215 (394)
T COG4886 184 NLSNLNNLDLSGNKISDLPPEIELLSALEELD 215 (394)
T ss_pred hhhhhhheeccCCccccCchhhhhhhhhhhhh
Confidence 89999999999999988888765555566664
No 92
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.17 E-value=6.2e-05 Score=84.00 Aligned_cols=185 Identities=14% Similarity=0.148 Sum_probs=110.3
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChh--hh------------------c
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSD--VK------------------A 222 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~--~~------------------~ 222 (961)
.+++|.+..++.+..++... .-...+.++|++|+||||+|+.+.+.-. .. .
T Consensus 14 ~~iig~~~~~~~l~~~~~~~---------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~ 84 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNG---------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGS 84 (355)
T ss_pred hhccCcHHHHHHHHHHHHcC---------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCC
Confidence 36899999999999988752 2245788999999999999988876311 00 1
Q ss_pred cCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCC
Q 037574 223 NFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGS 302 (961)
Q Consensus 223 ~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~ 302 (961)
+++. +++..+..... ...++++..+... -..+++-++|+|++. .-.......+...+....
T Consensus 85 ~~~~-~~~~~~~~~~~-~~~~~l~~~~~~~----------------p~~~~~~vviidea~-~l~~~~~~~Ll~~le~~~ 145 (355)
T TIGR02397 85 SLDV-IEIDAASNNGV-DDIREILDNVKYA----------------PSSGKYKVYIIDEVH-MLSKSAFNALLKTLEEPP 145 (355)
T ss_pred CCCE-EEeeccccCCH-HHHHHHHHHHhcC----------------cccCCceEEEEeChh-hcCHHHHHHHHHHHhCCc
Confidence 2222 22322211111 1112222222110 123455689999985 334456677777776655
Q ss_pred CCcEEEEecCCCc-ccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCch
Q 037574 303 EGSRILVTRRGEK-NGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLP 381 (961)
Q Consensus 303 ~gs~ilvTtR~~~-v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~P 381 (961)
..+.+|++|.+.. +...+. .....+++.+++.++....+...+-..+... -.+.+..|++.++|.|
T Consensus 146 ~~~~lIl~~~~~~~l~~~l~---------sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i----~~~a~~~l~~~~~g~~ 212 (355)
T TIGR02397 146 EHVVFILATTEPHKIPATIL---------SRCQRFDFKRIPLEDIVERLKKILDKEGIKI----EDEALELIARAADGSL 212 (355)
T ss_pred cceeEEEEeCCHHHHHHHHH---------hheeEEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCh
Confidence 5667667765433 222111 1126788999999999998888664322211 1356788899999998
Q ss_pred HHHHHHH
Q 037574 382 FAVKILG 388 (961)
Q Consensus 382 Lai~~~~ 388 (961)
-.+....
T Consensus 213 ~~a~~~l 219 (355)
T TIGR02397 213 RDALSLL 219 (355)
T ss_pred HHHHHHH
Confidence 7555443
No 93
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=4.7e-05 Score=87.34 Aligned_cols=183 Identities=13% Similarity=0.157 Sum_probs=110.1
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhh-------------------cc
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVK-------------------AN 223 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~ 223 (961)
.++||-+..++.+..++... .-...+.++|+.|+||||+|+.+.+.---. +.
T Consensus 16 ~divGq~~v~~~L~~~~~~~---------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~ 86 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQ---------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGR 86 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhC---------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCC
Confidence 35899999999999999753 223567899999999999999987631100 11
Q ss_pred CceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCC
Q 037574 224 FDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSE 303 (961)
Q Consensus 224 F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~ 303 (961)
|.-++.+..+....++. .+++++.+... -..++.-++|+|++. .-+......+...+.....
T Consensus 87 ~~d~~eidaas~~~v~~-iR~l~~~~~~~----------------p~~~~~kV~iIDE~~-~ls~~a~naLLk~LEepp~ 148 (509)
T PRK14958 87 FPDLFEVDAASRTKVED-TRELLDNIPYA----------------PTKGRFKVYLIDEVH-MLSGHSFNALLKTLEEPPS 148 (509)
T ss_pred CceEEEEcccccCCHHH-HHHHHHHHhhc----------------cccCCcEEEEEEChH-hcCHHHHHHHHHHHhccCC
Confidence 11223333222222221 12222221110 113566789999996 5566777778888877656
Q ss_pred CcEEEEecC-CCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchH
Q 037574 304 GSRILVTRR-GEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPF 382 (961)
Q Consensus 304 gs~ilvTtR-~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PL 382 (961)
.+++|++|. ...+...+. .+...+++++++.++....+.+.+-..+... -.+....|++.++|.+-
T Consensus 149 ~~~fIlattd~~kl~~tI~---------SRc~~~~f~~l~~~~i~~~l~~il~~egi~~----~~~al~~ia~~s~GslR 215 (509)
T PRK14958 149 HVKFILATTDHHKLPVTVL---------SRCLQFHLAQLPPLQIAAHCQHLLKEENVEF----ENAALDLLARAANGSVR 215 (509)
T ss_pred CeEEEEEECChHhchHHHH---------HHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCcHH
Confidence 666666553 333332221 1127789999999998887776654332211 12346678899999885
Q ss_pred HHH
Q 037574 383 AVK 385 (961)
Q Consensus 383 ai~ 385 (961)
-+.
T Consensus 216 ~al 218 (509)
T PRK14958 216 DAL 218 (509)
T ss_pred HHH
Confidence 443
No 94
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.15 E-value=1.2e-07 Score=99.33 Aligned_cols=293 Identities=17% Similarity=0.146 Sum_probs=153.2
Q ss_pred CcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcccC--CcchhccCCCcEeecCCCCCCcccc-c-cccc
Q 037574 599 TCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKKL--PKTLCELYNLQTLELSWCSNLRNLP-Q-GMGK 674 (961)
Q Consensus 599 ~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~l--p~~i~~L~~L~~L~l~~~~~l~~lP-~-~i~~ 674 (961)
..|+.|.+.++..... ..+-.....++++..|.+.+|..++.- -..-..+++|++|++..|..++..- . -...
T Consensus 138 g~lk~LSlrG~r~v~~---sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g 214 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGD---SSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG 214 (483)
T ss_pred cccccccccccccCCc---chhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence 3577888888842211 112222456777888888888755532 1222357788888888887665442 2 2334
Q ss_pred CCCCcEEEeCCcc-cccCCcCCCCCCCCCcCCceEecCCCCCCCCCChhhhhcccccCCceeEcCCCCCChhhhHhhccc
Q 037574 675 LINLRHVVNVGTP-LSYMPKGIERWSCLRTLSEFIVSGGNDDKKASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELS 753 (961)
Q Consensus 675 L~~L~~L~l~~~~-l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~ 753 (961)
.++|.+|+++.+. +.. .+++.+ ...++.+..+ ...++.... .+++...=.
T Consensus 215 C~kL~~lNlSwc~qi~~--------~gv~~~----------------~rG~~~l~~~----~~kGC~e~~-le~l~~~~~ 265 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISG--------NGVQAL----------------QRGCKELEKL----SLKGCLELE-LEALLKAAA 265 (483)
T ss_pred hhhHHHhhhccCchhhc--------CcchHH----------------hccchhhhhh----hhccccccc-HHHHHHHhc
Confidence 7788888875432 111 111111 1111111111 111121111 111111001
Q ss_pred cccccCceeEEecCCCCcCCCccchHHHHhcCCCCCCcCceEEeeecCccc--cccccccccCceEEEEeCCCCCCcCC-
Q 037574 754 KREKLLALGISFDRDDEEGRKKEDDEAVVEGLELPSNLESMEMFYYRGESI--SLMMIMLSNKLRSLTLDRCVNLKQLP- 830 (961)
Q Consensus 754 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~~l~- 830 (961)
.+.-+..+++..+.... +..+...-..+..|+.|..+++....- -|--....++|+.|.|..|....+.-
T Consensus 266 ~~~~i~~lnl~~c~~lT-------D~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~f 338 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQLT-------DEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGF 338 (483)
T ss_pred cChHhhccchhhhcccc-------chHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhh
Confidence 12223344444442221 223333333456778888777654322 34334466888888888887655432
Q ss_pred -CC-CCCCccceeeeccccCceEeCccccccCCCCCCCcccccCcccceeeccccccccccccccccCccccccccccee
Q 037574 831 -GL-GGLPSLESLTLRNMKRIEKVGNEFLLTDRTSSTGTAVSAFPKLKSLVFLKMKAWREWKYKTKRGKHYKIMPCLCSL 908 (961)
Q Consensus 831 -~l-~~lp~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L 908 (961)
.+ .+.+.|+.|++.+|..+..- .+.. ....+|.|+.|.++.|....+-.. .........+..|+.+
T Consensus 339 t~l~rn~~~Le~l~~e~~~~~~d~--tL~s---------ls~~C~~lr~lslshce~itD~gi-~~l~~~~c~~~~l~~l 406 (483)
T KOG4341|consen 339 TMLGRNCPHLERLDLEECGLITDG--TLAS---------LSRNCPRLRVLSLSHCELITDEGI-RHLSSSSCSLEGLEVL 406 (483)
T ss_pred hhhhcCChhhhhhcccccceehhh--hHhh---------hccCCchhccCChhhhhhhhhhhh-hhhhhcccccccccee
Confidence 33 35678888888776432211 1111 135688888888887755443311 0001122356778889
Q ss_pred cccccccCcCCCCCCC--CCCCCeEEEccccchhhh
Q 037574 909 TIGYCNELEMLPAEHF--PDTLKDLKIISCSKLEKS 942 (961)
Q Consensus 909 ~i~~C~~L~~lp~~~l--~~sL~~L~i~~c~~l~~~ 942 (961)
.+.+||.+..--..++ ..+|+.+++.+|..++..
T Consensus 407 EL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 407 ELDNCPLITDATLEHLSICRNLERIELIDCQDVTKE 442 (483)
T ss_pred eecCCCCchHHHHHHHhhCcccceeeeechhhhhhh
Confidence 9999988765433333 346888999999876654
No 95
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.13 E-value=6.6e-07 Score=89.49 Aligned_cols=109 Identities=21% Similarity=0.238 Sum_probs=79.9
Q ss_pred hccccccccCceeEEecCCCCcCCCccchHHHHhcCCCCCCcCceEEeeecCccc-cccccccccCceEEEEeCCCCCCc
Q 037574 750 AELSKREKLLALGISFDRDDEEGRKKEDDEAVVEGLELPSNLESMEMFYYRGESI-SLMMIMLSNKLRSLTLDRCVNLKQ 828 (961)
Q Consensus 750 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~ 828 (961)
.+++-.+.++.|+++.|... ..+.+..+++|..|+++++....+ .|.. .+-|.+.|.|.+| .+++
T Consensus 301 ESvKL~Pkir~L~lS~N~i~-----------~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~--KLGNIKtL~La~N-~iE~ 366 (490)
T KOG1259|consen 301 ESVKLAPKLRRLILSQNRIR-----------TVQNLAELPQLQLLDLSGNLLAECVGWHL--KLGNIKTLKLAQN-KIET 366 (490)
T ss_pred hhhhhccceeEEecccccee-----------eehhhhhcccceEeecccchhHhhhhhHh--hhcCEeeeehhhh-hHhh
Confidence 44555688889999888654 233355568899999998887777 7776 7888999999887 6788
Q ss_pred CCCCCCCCccceeeeccccCceEeCccccccCCCCCCCcccccCcccceeeccccc
Q 037574 829 LPGLGGLPSLESLTLRNMKRIEKVGNEFLLTDRTSSTGTAVSAFPKLKSLVFLKMK 884 (961)
Q Consensus 829 l~~l~~lp~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~ 884 (961)
+..++.|=+|..|++.+ ++++.+..-- + .+.+|+|+.|.+.+.|
T Consensus 367 LSGL~KLYSLvnLDl~~-N~Ie~ldeV~-~----------IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 367 LSGLRKLYSLVNLDLSS-NQIEELDEVN-H----------IGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhhHhhhhheeccccc-cchhhHHHhc-c----------cccccHHHHHhhcCCC
Confidence 88888889999999987 5566554321 1 3567778877776654
No 96
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.11 E-value=5.1e-05 Score=78.50 Aligned_cols=161 Identities=16% Similarity=0.132 Sum_probs=88.9
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQG 272 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 272 (961)
....+.|+|..|+|||+||+.+++... .... ..++++..... .. + ... .
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~-~~~~i~~~~~~------~~----~------------------~~~-~ 89 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS-YGGR-NARYLDAASPL------LA----F------------------DFD-P 89 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-hCCC-cEEEEehHHhH------HH----H------------------hhc-c
Confidence 346789999999999999999998421 2222 34455533211 00 0 011 2
Q ss_pred CceEEEeecccCCCChhhHHHHHHhccCC-CCCc-EEEEecCCCcccccccccccccCCCCCcceeecCCCChHHHHHHH
Q 037574 273 KKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGS-RILVTRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLF 350 (961)
Q Consensus 273 kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs-~ilvTtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf 350 (961)
..-+||+||+. ..+...-+.+...+... ..|. .||+|++........... + ...-.....+.+.++++++-..++
T Consensus 90 ~~~~liiDdi~-~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~-L-~sr~~~~~~i~l~pl~~~~~~~~l 166 (227)
T PRK08903 90 EAELYAVDDVE-RLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLRED-L-RTRLGWGLVYELKPLSDADKIAAL 166 (227)
T ss_pred cCCEEEEeChh-hcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHH-H-HHHHhcCeEEEecCCCHHHHHHHH
Confidence 33478999995 22222323344444321 2343 466666643322111110 0 000001168899999999877777
Q ss_pred HHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHHHhhc
Q 037574 351 RQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKILGSLL 391 (961)
Q Consensus 351 ~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~~~~l 391 (961)
.+.+-.... .--++..+.|++.+.|.+..+..+...+
T Consensus 167 ~~~~~~~~v----~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 167 KAAAAERGL----QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHHcCC----CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 765422221 1223467778889999998887766654
No 97
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.10 E-value=3.3e-06 Score=66.67 Aligned_cols=56 Identities=34% Similarity=0.525 Sum_probs=28.3
Q ss_pred CcceEeccCCCCcccCC-cchhccCCCcEeecCCCCCCccccc-ccccCCCCcEEEeCCc
Q 037574 629 HLRYLNLSKNNKIKKLP-KTLCELYNLQTLELSWCSNLRNLPQ-GMGKLINLRHVVNVGT 686 (961)
Q Consensus 629 ~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~ 686 (961)
+|++|++++|. +..+| ..+..+++|++|++++|. +..+|. .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSST-ESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 45555555554 55554 244555555555555444 444442 3455555555555544
No 98
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=0.0001 Score=85.19 Aligned_cols=184 Identities=16% Similarity=0.204 Sum_probs=109.6
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhh-------------------cc
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVK-------------------AN 223 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~ 223 (961)
.+++|.+..++.+..++... .-...+.++|+.|+||||+|+.+.+.-.-. +.
T Consensus 16 ~divGq~~v~~~L~~~i~~~---------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~ 86 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQ---------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGR 86 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcC---------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCC
Confidence 35899999999999888753 223567899999999999999997631100 01
Q ss_pred CceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCC
Q 037574 224 FDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSE 303 (961)
Q Consensus 224 F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~ 303 (961)
|...+++..+....+. .++++++.+... -..+++-++|+|++. ..+......+...+.....
T Consensus 87 ~~d~~ei~~~~~~~vd-~ir~l~~~~~~~----------------p~~~~~kVvIIDEad-~ls~~a~naLLK~LEepp~ 148 (527)
T PRK14969 87 FVDLIEVDAASNTQVD-AMRELLDNAQYA----------------PTRGRFKVYIIDEVH-MLSKSAFNAMLKTLEEPPE 148 (527)
T ss_pred CCceeEeeccccCCHH-HHHHHHHHHhhC----------------cccCCceEEEEcCcc-cCCHHHHHHHHHHHhCCCC
Confidence 1122222222111111 111222211100 113567799999996 5555667778878877555
Q ss_pred CcEEEEec-CCCccccc-ccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCch
Q 037574 304 GSRILVTR-RGEKNGTN-MTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLP 381 (961)
Q Consensus 304 gs~ilvTt-R~~~v~~~-~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~P 381 (961)
.+.+|++| ....+... .... ..+++++++.++....+.+.+...+.. .-.+..+.|++.++|.+
T Consensus 149 ~~~fIL~t~d~~kil~tI~SRc----------~~~~f~~l~~~~i~~~L~~il~~egi~----~~~~al~~la~~s~Gsl 214 (527)
T PRK14969 149 HVKFILATTDPQKIPVTVLSRC----------LQFNLKQMPPPLIVSHLQHILEQENIP----FDATALQLLARAAAGSM 214 (527)
T ss_pred CEEEEEEeCChhhCchhHHHHH----------HHHhcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCH
Confidence 66665555 33333322 2222 789999999999998887765432221 12335677899999987
Q ss_pred H-HHHHH
Q 037574 382 F-AVKIL 387 (961)
Q Consensus 382 L-ai~~~ 387 (961)
- |+..+
T Consensus 215 r~al~ll 221 (527)
T PRK14969 215 RDALSLL 221 (527)
T ss_pred HHHHHHH
Confidence 5 44433
No 99
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.08 E-value=7.2e-05 Score=83.24 Aligned_cols=189 Identities=13% Similarity=0.105 Sum_probs=100.7
Q ss_pred CCCccccchHHHHHHHHHHhCCCCCCc---CCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCC
Q 037574 161 DPLEFHGRNVEKKNILQLLKGESSDEE---SGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRD 237 (961)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~~~~~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 237 (961)
...++.|++..++++.+.+...-...+ .-+....+-+.++|++|+|||++|+.+++. ....| +.+..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~--- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG--- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch---
Confidence 345689999999999887753211100 000123456899999999999999999983 33333 22221
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh-cCCceEEEeecccCC----------CChhhHHHHHHhc---cC--C
Q 037574 238 EIRVAKAILESLKGSVSSQVEMETVLQYINEFV-QGKKVLLVLDDVWWN----------ACPRYWEQLMYSL---KS--G 301 (961)
Q Consensus 238 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~----------~~~~~~~~l~~~l---~~--~ 301 (961)
..+. ....+ ........+.+.. ...+.+|++||++.- .+......+...+ .. .
T Consensus 190 -~~l~----~~~~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 190 -SELV----RKYIG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred -HHHH----HHhhh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 1111 11100 0111222222222 346789999999510 0112222333333 21 1
Q ss_pred CCCcEEEEecCCCcccc-cccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCc
Q 037574 302 SEGSRILVTRRGEKNGT-NMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGL 380 (961)
Q Consensus 302 ~~gs~ilvTtR~~~v~~-~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~ 380 (961)
..+..||.||....... .+... +.-...+.+...+.++..++|+.++....... ... ...+++.+.|.
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~------grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~-~~~----~~~la~~t~g~ 327 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRP------GRFDRIIEVPLPDFEGRLEILKIHTRKMKLAE-DVD----LEAIAKMTEGA 327 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCc------ccCceEEEeCCcCHHHHHHHHHHHHhcCCCCc-cCC----HHHHHHHcCCC
Confidence 24667888887553221 11100 01115688999999999999998875433211 122 34566667665
Q ss_pred h
Q 037574 381 P 381 (961)
Q Consensus 381 P 381 (961)
.
T Consensus 328 s 328 (364)
T TIGR01242 328 S 328 (364)
T ss_pred C
Confidence 3
No 100
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=6e-05 Score=84.53 Aligned_cols=200 Identities=12% Similarity=0.121 Sum_probs=111.0
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEE-eCCCCCHHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVS-ASCPRDEIRV 241 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-~s~~~~~~~~ 241 (961)
.+++|.+..++.+..++... .-...+.++|+.|+||||+|+.+.+.-.-...++...|.. ....+..-..
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~---------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~ 86 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMG---------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECES 86 (397)
T ss_pred hhccChHHHHHHHHHHHHhC---------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHH
Confidence 36889999988888888752 1234588999999999999999876311111111111110 0011111111
Q ss_pred HHHHHHHhcCC-----CCCcccHHHHHHHHHHH----hcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEec-
Q 037574 242 AKAILESLKGS-----VSSQVEMETVLQYINEF----VQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTR- 311 (961)
Q Consensus 242 ~~~il~~l~~~-----~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTt- 311 (961)
-+.+......+ .......+++.+..... ..+++-++|+|++. .-+...++.+...+......+.+|++|
T Consensus 87 c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~-~l~~~~~~~LLk~LEep~~~t~~Il~t~ 165 (397)
T PRK14955 87 CRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVH-MLSIAAFNAFLKTLEEPPPHAIFIFATT 165 (397)
T ss_pred HHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChh-hCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 11111110000 00111123333222111 23556689999996 445567888888887766666766555
Q ss_pred CCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHH
Q 037574 312 RGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVK 385 (961)
Q Consensus 312 R~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~ 385 (961)
+...+...+.. +...+++.++++++....+...+-..+. .--.+.+..|++.++|.+--+.
T Consensus 166 ~~~kl~~tl~s---------R~~~v~f~~l~~~ei~~~l~~~~~~~g~----~i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 166 ELHKIPATIAS---------RCQRFNFKRIPLEEIQQQLQGICEAEGI----SVDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred ChHHhHHHHHH---------HHHHhhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 33333322211 1167899999999999888876532221 1223467889999999875333
No 101
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.06 E-value=9.5e-05 Score=86.11 Aligned_cols=198 Identities=13% Similarity=0.122 Sum_probs=113.3
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCc--eeEEEEeCCCCCHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFD--KRIWVSASCPRDEIR 240 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~s~~~~~~~ 240 (961)
.+++|.+..++.+..++... .-...+.++|+.|+||||+|+.+.+.-.-..... ...+ ..+..-.
T Consensus 24 ~dliGq~~~v~~L~~~~~~g---------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~ 90 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETG---------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGE 90 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcC---------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccH
Confidence 36899999999999988753 2345788999999999999999987311110000 0000 0011111
Q ss_pred HHHHHHHHhcCC-----CCCcccHHHH---HHHHHH-HhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEec
Q 037574 241 VAKAILESLKGS-----VSSQVEMETV---LQYINE-FVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTR 311 (961)
Q Consensus 241 ~~~~il~~l~~~-----~~~~~~~~~~---~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTt 311 (961)
.-+.|...-..+ .......+++ .+.+.. -..+++-++|+|++. ..+....+.+...+......+.+|++|
T Consensus 91 ~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad-~Ls~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 91 HCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVH-MLSTAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChH-hCCHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 111222111100 0011122332 222211 113456689999996 445566777887877666667766555
Q ss_pred -CCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHH
Q 037574 312 -RGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKIL 387 (961)
Q Consensus 312 -R~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~ 387 (961)
....+...+. .+...+++.+++.++....+.+.+-..+... -.+....|++.++|.+.-+...
T Consensus 170 te~~kll~tI~---------SRcq~~~f~~l~~~el~~~L~~i~~kegi~i----~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 170 TEIRKVPVTVL---------SRCQRFDLRRIEADVLAAHLSRIAAKEGVEV----EDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred CChhhhhHHHH---------hheeEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 3333322221 1227899999999999999988764332221 1246778899999998655443
No 102
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.00015 Score=80.97 Aligned_cols=180 Identities=13% Similarity=0.188 Sum_probs=104.8
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhh------hccCceeE-EEEeCCC
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDV------KANFDKRI-WVSASCP 235 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~------~~~F~~~~-wv~~s~~ 235 (961)
.+++|.+...+.+...+... .-.+.+.++|++|+||||+|+.+.+...- ...|...+ -+.....
T Consensus 17 ~~iig~~~~~~~l~~~i~~~---------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~ 87 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN---------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASN 87 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC---------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccC
Confidence 35899999999999998752 23458889999999999999999773110 01121111 1111111
Q ss_pred CCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEec-CCC
Q 037574 236 RDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTR-RGE 314 (961)
Q Consensus 236 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~ 314 (961)
... +..+.+++++... -..+++-++|+|++. ......++.+...+......+.+|++| ...
T Consensus 88 ~~~-~~i~~l~~~~~~~----------------p~~~~~kiviIDE~~-~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~ 149 (367)
T PRK14970 88 NSV-DDIRNLIDQVRIP----------------PQTGKYKIYIIDEVH-MLSSAAFNAFLKTLEEPPAHAIFILATTEKH 149 (367)
T ss_pred CCH-HHHHHHHHHHhhc----------------cccCCcEEEEEeChh-hcCHHHHHHHHHHHhCCCCceEEEEEeCCcc
Confidence 111 1111222211100 112455689999995 334455777776665544455555555 333
Q ss_pred cccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchH
Q 037574 315 KNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPF 382 (961)
Q Consensus 315 ~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PL 382 (961)
.+..... .+...+++.++++++....+...+...+..- -.+.+..|++.++|.+-
T Consensus 150 kl~~~l~---------sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i----~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 150 KIIPTIL---------SRCQIFDFKRITIKDIKEHLAGIAVKEGIKF----EDDALHIIAQKADGALR 204 (367)
T ss_pred cCCHHHH---------hcceeEecCCccHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHhCCCCHH
Confidence 3322221 1126789999999999998888764433211 13467788889998765
No 103
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.04 E-value=1.2e-05 Score=86.65 Aligned_cols=90 Identities=14% Similarity=0.143 Sum_probs=63.3
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCC--CCHHHHHHHHHHHhcCCCCCcccH------HHHHH
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCP--RDEIRVAKAILESLKGSVSSQVEM------ETVLQ 264 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~il~~l~~~~~~~~~~------~~~~~ 264 (961)
.-..++|+|++|+|||||++.+++.... .+|+..+||.+.+. .++.++++.++..+-....+.... +.+.+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 4468999999999999999999995332 37999999998866 789999999865543332221111 12222
Q ss_pred HHHHH-hcCCceEEEeeccc
Q 037574 265 YINEF-VQGKKVLLVLDDVW 283 (961)
Q Consensus 265 ~l~~~-l~~kr~LlVlDdvw 283 (961)
..... -.|++++|++|++.
T Consensus 246 ~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHcCCCeEEEEEChh
Confidence 22222 26899999999994
No 104
>PLN03150 hypothetical protein; Provisional
Probab=98.03 E-value=1.3e-05 Score=95.36 Aligned_cols=91 Identities=31% Similarity=0.492 Sum_probs=52.8
Q ss_pred ccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccccccccCCCCcE
Q 037574 601 LRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLINLRH 680 (961)
Q Consensus 601 Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~ 680 (961)
++.|+|+++ .....+|..++++++|++|+|++|.....+|..++.+.+|++|+|++|.....+|..+++|++|++
T Consensus 420 v~~L~L~~n-----~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDNQ-----GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEECCCC-----CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCE
Confidence 555666665 323455666666666666666666522356666666666666666666533355666666666666
Q ss_pred EEeCCcccc-cCCcCCC
Q 037574 681 VVNVGTPLS-YMPKGIE 696 (961)
Q Consensus 681 L~l~~~~l~-~~p~~i~ 696 (961)
|++++|++. .+|..++
T Consensus 495 L~Ls~N~l~g~iP~~l~ 511 (623)
T PLN03150 495 LNLNGNSLSGRVPAALG 511 (623)
T ss_pred EECcCCcccccCChHHh
Confidence 666555554 4454443
No 105
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00021 Score=82.78 Aligned_cols=198 Identities=15% Similarity=0.136 Sum_probs=112.7
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVA 242 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 242 (961)
.+++|.+...+.+..++... .-...+.++|+.|+||||+|+.+.+.-.-....+ + ..++.-..-
T Consensus 13 ~eivGq~~i~~~L~~~i~~~---------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~----~pCg~C~~C 76 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAG---------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---A----TPCGVCESC 76 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcC---------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C----CcccccHHH
Confidence 36899999999999998752 2245678999999999999999987311000000 0 001100111
Q ss_pred HHHHHH---------hcCCC-CCcccHHHHHHHHHHH-hcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEec
Q 037574 243 KAILES---------LKGSV-SSQVEMETVLQYINEF-VQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTR 311 (961)
Q Consensus 243 ~~il~~---------l~~~~-~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTt 311 (961)
+.|... +.... ....+..++.+.+... ..+++-++|+|++. .-+....+.|...+........+|++|
T Consensus 77 ~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah-~Lt~~A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAH-MVTTAGFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred HHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCC-cCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 111100 00000 0111122222222211 13566699999996 556677888888888766566655555
Q ss_pred -CCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchH-HHHHHHh
Q 037574 312 -RGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPF-AVKILGS 389 (961)
Q Consensus 312 -R~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PL-ai~~~~~ 389 (961)
....+...+.. +...+++.+++.++..+.+.+.+...+... -.+....|++.++|.+- |+..+-.
T Consensus 156 te~~kll~TI~S---------Rc~~~~F~~l~~~~i~~~L~~i~~~egi~i----~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 156 TEPEKVLPTIRS---------RTHHYPFRLLPPRTMRALIARICEQEGVVV----DDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred CChHhhHHHHHH---------hceEEEeeCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 43333322211 127899999999999988887664333211 13356778899999774 5554444
Q ss_pred h
Q 037574 390 L 390 (961)
Q Consensus 390 ~ 390 (961)
+
T Consensus 223 l 223 (584)
T PRK14952 223 L 223 (584)
T ss_pred H
Confidence 3
No 106
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.97 E-value=0.0002 Score=81.27 Aligned_cols=176 Identities=14% Similarity=0.137 Sum_probs=100.7
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccC--ceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhc
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANF--DKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQ 271 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 271 (961)
...+.|+|..|+|||+|++.+++. +.... ..+++++ ..++...+...+.... .....+.+.+.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~--l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~ 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNY--IESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEIC 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhc
Confidence 356899999999999999999883 33222 2334444 4566777776664311 11223333333
Q ss_pred CCceEEEeecccCCCChhhH-HHHHHhccC-CCCCcEEEEecCCCc-ccccccccccccCCCCCcceeecCCCChHHHHH
Q 037574 272 GKKVLLVLDDVWWNACPRYW-EQLMYSLKS-GSEGSRILVTRRGEK-NGTNMTEIGLGEKDGTNMTEIGLGELSAKECRS 348 (961)
Q Consensus 272 ~kr~LlVlDdvw~~~~~~~~-~~l~~~l~~-~~~gs~ilvTtR~~~-v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~ 348 (961)
..-+||+||+..-.....+ +.+...+.. ...|..||+|+.... ........ ...+-.....+.+++++.++-.+
T Consensus 206 -~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~r--L~SR~~~Gl~~~L~~pd~e~r~~ 282 (450)
T PRK14087 206 -QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNR--LITRFNMGLSIAIQKLDNKTATA 282 (450)
T ss_pred -cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHH--HHHHHhCCceeccCCcCHHHHHH
Confidence 3448899999522212222 334444432 234457888875432 11111100 00000111678899999999999
Q ss_pred HHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHHHh
Q 037574 349 LFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKILGS 389 (961)
Q Consensus 349 Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~~~ 389 (961)
++++.+-..... ..--.++..-|++.++|.|-.+.-+..
T Consensus 283 iL~~~~~~~gl~--~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 283 IIKKEIKNQNIK--QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHHHHhcCCC--CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 999887432210 122356788899999999976655543
No 107
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.97 E-value=7.8e-06 Score=64.51 Aligned_cols=58 Identities=36% Similarity=0.588 Sum_probs=44.6
Q ss_pred CcccEEEccCCChhhhhhhcccc-hhhcCCCCcceEeccCCCCcccCC-cchhccCCCcEeecCCCC
Q 037574 599 TCLRTLELSNHDNVLCKVIKKVP-KQIKRLIHLRYLNLSKNNKIKKLP-KTLCELYNLQTLELSWCS 663 (961)
Q Consensus 599 ~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~ 663 (961)
++|++|++++| . +..+| ..+..+++|++|++++|. ++.+| ..+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n-----~-l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-----K-LTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-----T-ESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-----C-CCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 46788888887 3 67776 467788888888888887 77766 467888888888888875
No 108
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=0.0002 Score=86.31 Aligned_cols=191 Identities=13% Similarity=0.114 Sum_probs=109.1
Q ss_pred ccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHH
Q 037574 164 EFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAK 243 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 243 (961)
+++|.+..++.|..++... .-...+.++|+.|+||||+|+.+.+...-...... ..+..-...+
T Consensus 16 eiiGqe~v~~~L~~~i~~~---------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pCg~C~sC~ 79 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSG---------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPCGECDSCV 79 (824)
T ss_pred HhcCcHHHHHHHHHHHHhC---------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCCcccHHHH
Confidence 5899999999999988763 22356889999999999999999763210011000 0000000001
Q ss_pred HHHHH-------hcCCCCCcccHHHHHH---HHH-HHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecC
Q 037574 244 AILES-------LKGSVSSQVEMETVLQ---YIN-EFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRR 312 (961)
Q Consensus 244 ~il~~-------l~~~~~~~~~~~~~~~---~l~-~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR 312 (961)
.|... +..+......++++.+ .+. .-..++.-++|+|++. .......+.|...+..-...+.+|++|.
T Consensus 80 ~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad-~lt~~a~NaLLK~LEEpP~~~~fIl~tt 158 (824)
T PRK07764 80 ALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAH-MVTPQGFNALLKIVEEPPEHLKFIFATT 158 (824)
T ss_pred HHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechh-hcCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 11000 0000000111222222 111 1124566689999996 5567778888888887666666665553
Q ss_pred -CCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHH
Q 037574 313 -GEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAV 384 (961)
Q Consensus 313 -~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai 384 (961)
...+...+. .+...|++..++.++...++.+.+-..+.. .-.+....|++.++|.+..+
T Consensus 159 ~~~kLl~TIr---------SRc~~v~F~~l~~~~l~~~L~~il~~EGv~----id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 159 EPDKVIGTIR---------SRTHHYPFRLVPPEVMRGYLERICAQEGVP----VEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred ChhhhhHHHH---------hheeEEEeeCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHH
Confidence 333332221 112789999999999998887765322221 12334577899999988433
No 109
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.95 E-value=0.00015 Score=78.00 Aligned_cols=221 Identities=17% Similarity=0.153 Sum_probs=125.9
Q ss_pred CCCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHH
Q 037574 161 DPLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIR 240 (961)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 240 (961)
.+..++||+.|++.+..|+...-+. ...+-+-|.|.+|.|||.+...++.+..-...=..++.+++..-....+
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~a 221 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLEL------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASA 221 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhc------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHH
Confidence 4567899999999999998765432 4457789999999999999999998643221112456777665567788
Q ss_pred HHHHHHHHhcCCC-CCcccHHHHHHHHHHHhcCC--ceEEEeecccCCCChhhHHHHHHhccC-CCCCcEEEEecC--CC
Q 037574 241 VAKAILESLKGSV-SSQVEMETVLQYINEFVQGK--KVLLVLDDVWWNACPRYWEQLMYSLKS-GSEGSRILVTRR--GE 314 (961)
Q Consensus 241 ~~~~il~~l~~~~-~~~~~~~~~~~~l~~~l~~k--r~LlVlDdvw~~~~~~~~~~l~~~l~~-~~~gs~ilvTtR--~~ 314 (961)
++..|...+.... ..... .+..+.+.+...+. -+|+|+|.++ .-....-..+-..|.+ .-+++++|+.-- .-
T Consensus 222 iF~kI~~~~~q~~~s~~~~-~~~~~~~~~h~~q~k~~~llVlDEmD-~L~tr~~~vLy~lFewp~lp~sr~iLiGiANsl 299 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTG-MQHLEKFEKHTKQSKFMLLLVLDEMD-HLITRSQTVLYTLFEWPKLPNSRIILIGIANSL 299 (529)
T ss_pred HHHHHHHHHHHHhcCCchh-HHHHHHHHHHHhcccceEEEEechhh-HHhhcccceeeeehhcccCCcceeeeeeehhhh
Confidence 8888888873221 12222 44555666655443 5899999884 1111111112222222 124556554321 11
Q ss_pred cccccccccccccC-CCCCcceeecCCCChHHHHHHHHHHHcCCCCC-CCccchHHHHHHHHHhcCCchHHHHHHHhhc
Q 037574 315 KNGTNMTEIGLGEK-DGTNMTEIGLGELSAKECRSLFRQIAFDGRSS-DDREKFEPIGRLVVGKCKGLPFAVKILGSLL 391 (961)
Q Consensus 315 ~v~~~~~~~~~~~~-~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~-~~~~~l~~~~~~I~~~c~G~PLai~~~~~~l 391 (961)
+..+..- +.... ..-.+..+..+|-+.++-.++|+.+.-..... .-+..++-.|++++..-|-+--|+.+.-+++
T Consensus 300 DlTdR~L--prL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 300 DLTDRFL--PRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred hHHHHHh--hhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 1111000 00000 11233788899999999999998876332221 1122333444555444455555555554443
No 110
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=0.00021 Score=82.39 Aligned_cols=199 Identities=14% Similarity=0.213 Sum_probs=112.6
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVA 242 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 242 (961)
.+++|.+..+..|...+... .-...+.++|+.|+||||+|+.+.+..--..... ...++.-...
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~---------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-------~~pCg~C~sC 79 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQEN---------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-------GEPCNTCEQC 79 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcC---------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCC-------CCCCcccHHH
Confidence 35789988888888888652 2246788999999999999999987321100000 0011111111
Q ss_pred HHHHHHhcCCC-----CCcccHHH---HHHHHHH-HhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCC
Q 037574 243 KAILESLKGSV-----SSQVEMET---VLQYINE-FVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRG 313 (961)
Q Consensus 243 ~~il~~l~~~~-----~~~~~~~~---~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 313 (961)
+.|......+. ......++ +.+.+.. -..+++-++|+|++. ..+......|...+........+|++|..
T Consensus 80 ~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad-~Lt~~a~naLLk~LEEP~~~~ifILaTt~ 158 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAH-MLTREAFNALLKTLEEPPARVTFVLATTE 158 (624)
T ss_pred HHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChH-hCCHHHHHHHHHHhhccCCCEEEEEecCC
Confidence 11111100000 00011122 1111111 124566799999996 45566777788777654445555555543
Q ss_pred -CcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCch-HHHHHHHhhc
Q 037574 314 -EKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLP-FAVKILGSLL 391 (961)
Q Consensus 314 -~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~P-Lai~~~~~~l 391 (961)
..+...+. .+...+++.+++.++....+...+....... -.+.++.|++.++|.+ -|+..+..++
T Consensus 159 ~~kll~TI~---------SRcq~i~F~pLs~~eL~~~L~~il~~egi~i----d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 159 PHKFPVTIV---------SRCQHFTFTRLSEAGLEAHLTKVLGREGVDY----DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhhhhHHHH---------hhhhccccCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 33332211 1127789999999999999988664333211 2346778899999965 5777665544
No 111
>PLN03150 hypothetical protein; Provisional
Probab=97.93 E-value=1.6e-05 Score=94.56 Aligned_cols=108 Identities=20% Similarity=0.322 Sum_probs=87.4
Q ss_pred CccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcccCCcchhccC
Q 037574 573 KLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKKLPKTLCELY 652 (961)
Q Consensus 573 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~ 652 (961)
.++.|.+.++. +. ..++..+.++++|+.|+|++| .....+|..++.+++|++|+|++|.....+|..+++|+
T Consensus 419 ~v~~L~L~~n~--L~-g~ip~~i~~L~~L~~L~Ls~N-----~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~ 490 (623)
T PLN03150 419 FIDGLGLDNQG--LR-GFIPNDISKLRHLQSINLSGN-----SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490 (623)
T ss_pred EEEEEECCCCC--cc-ccCCHHHhCCCCCCEEECCCC-----cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCC
Confidence 46778888776 33 235566889999999999999 43458899999999999999999994458999999999
Q ss_pred CCcEeecCCCCCCcccccccccC-CCCcEEEeCCccc
Q 037574 653 NLQTLELSWCSNLRNLPQGMGKL-INLRHVVNVGTPL 688 (961)
Q Consensus 653 ~L~~L~l~~~~~l~~lP~~i~~L-~~L~~L~l~~~~l 688 (961)
+|++|+|++|.....+|..+..+ .++..+++.+|..
T Consensus 491 ~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 491 SLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence 99999999998666889888763 5777888877643
No 112
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=0.00035 Score=81.91 Aligned_cols=194 Identities=14% Similarity=0.171 Sum_probs=109.2
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVA 242 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 242 (961)
.+++|.+...+.+..++... .-.+.+.++|+.|+||||+|+.+++.-- ..+.. ..+ ..+. ..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~---------rl~HAYLF~GP~GtGKTt~AriLAk~Ln-C~~~~-~~~----~pC~---~C 79 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSN---------KISHAYLFSGPRGTGKTSVAKIFANALN-CSHKT-DLL----EPCQ---EC 79 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcC---------CCCeEEEEECCCCCcHHHHHHHHHHHhc-ccccC-CCC----Cchh---HH
Confidence 35889999999999988753 2345678999999999999999976210 00000 000 0000 00
Q ss_pred HHHHH------HhcCCC-CCcccHHHHHHHHHHH-hcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEE-ecCC
Q 037574 243 KAILE------SLKGSV-SSQVEMETVLQYINEF-VQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILV-TRRG 313 (961)
Q Consensus 243 ~~il~------~l~~~~-~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~ 313 (961)
..... .+.+.. ....+..++.+.+... ..+++-++|+|++. .-....+..+...+......+.+|+ |++.
T Consensus 80 ~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~-~LT~~A~NALLKtLEEPP~~tifILaTte~ 158 (725)
T PRK07133 80 IENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVH-MLSKSAFNALLKTLEEPPKHVIFILATTEV 158 (725)
T ss_pred HHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChh-hCCHHHHHHHHHHhhcCCCceEEEEEcCCh
Confidence 00000 000000 0011122233222221 23566799999996 4556678888877776555555554 4444
Q ss_pred CcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchH-HHHHHH
Q 037574 314 EKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPF-AVKILG 388 (961)
Q Consensus 314 ~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PL-ai~~~~ 388 (961)
..+...+. .+...+.+.+++.++....+...+-..+... -.+.++.|++.++|.+- |+..+-
T Consensus 159 ~KLl~TI~---------SRcq~ieF~~L~~eeI~~~L~~il~kegI~i----d~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 159 HKIPLTIL---------SRVQRFNFRRISEDEIVSRLEFILEKENISY----EKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred hhhhHHHH---------hhceeEEccCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 44432211 1227899999999999988887653322211 13457789999999774 444433
No 113
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.93 E-value=0.00043 Score=72.73 Aligned_cols=175 Identities=15% Similarity=0.185 Sum_probs=105.4
Q ss_pred CCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHH
Q 037574 162 PLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRV 241 (961)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 241 (961)
.+.|.+|+.++..+..++...+. .-+..|.|+|-.|.|||.+++++++.. . ...+|+++-..++.+-+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~-------~~PS~~~iyG~sgTGKT~~~r~~l~~~--n---~~~vw~n~~ecft~~~l 72 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC-------TIPSIVHIYGHSGTGKTYLVRQLLRKL--N---LENVWLNCVECFTYAIL 72 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc-------ccceeEEEeccCCCchhHHHHHHHhhc--C---CcceeeehHHhccHHHH
Confidence 45688999999999988876542 235667999999999999999999954 2 24689999999999999
Q ss_pred HHHHHHHhcCCCCCc--c-----cHHHHHHHHHH--Hh--cCCceEEEeecccCC--CChhhHHHHHHhccCCCCCcEEE
Q 037574 242 AKAILESLKGSVSSQ--V-----EMETVLQYINE--FV--QGKKVLLVLDDVWWN--ACPRYWEQLMYSLKSGSEGSRIL 308 (961)
Q Consensus 242 ~~~il~~l~~~~~~~--~-----~~~~~~~~l~~--~l--~~kr~LlVlDdvw~~--~~~~~~~~l~~~l~~~~~gs~il 308 (961)
+..|+.++...+.+. . ........+.+ .. +++.++||||++..- .+......+...-.-.....-+|
T Consensus 73 le~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~i 152 (438)
T KOG2543|consen 73 LEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVI 152 (438)
T ss_pred HHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEE
Confidence 999999995322221 1 11222233333 11 246899999999410 01111111111111111123344
Q ss_pred EecCCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHH
Q 037574 309 VTRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQI 353 (961)
Q Consensus 309 vTtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 353 (961)
+++-.......... .......++....-+.+|...++.+.
T Consensus 153 ils~~~~e~~y~~n-----~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 153 ILSAPSCEKQYLIN-----TGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred EEeccccHHHhhcc-----cCCCCceEEecCCCCHHHHHHHHhcC
Confidence 44433222221110 00112256778888999999888764
No 114
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00038 Score=79.45 Aligned_cols=185 Identities=14% Similarity=0.164 Sum_probs=107.8
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhh--h-----------------cc
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDV--K-----------------AN 223 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~-----------------~~ 223 (961)
.+++|.+.....+..++... .-...+.++|+.|+||||+|+.++....- . +.
T Consensus 16 ~diiGq~~i~~~L~~~i~~~---------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~ 86 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQ---------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGS 86 (486)
T ss_pred HHccChHHHHHHHHHHHHcC---------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCC
Confidence 35889999999999988753 22356778999999999999998763100 0 01
Q ss_pred CceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-hcCCceEEEeecccCCCChhhHHHHHHhccCCC
Q 037574 224 FDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEF-VQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGS 302 (961)
Q Consensus 224 F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~ 302 (961)
|...+++..+..... .+...+.+.+... ..+++-++|+|++. .......+.+...+....
T Consensus 87 ~~d~~eidaas~~gv------------------d~ir~I~~~~~~~P~~~~~KVvIIDEad-~Lt~~a~naLLk~LEepp 147 (486)
T PRK14953 87 FPDLIEIDAASNRGI------------------DDIRALRDAVSYTPIKGKYKVYIIDEAH-MLTKEAFNALLKTLEEPP 147 (486)
T ss_pred CCcEEEEeCccCCCH------------------HHHHHHHHHHHhCcccCCeeEEEEEChh-hcCHHHHHHHHHHHhcCC
Confidence 111222221111111 1112222222111 13567799999996 445556677777777655
Q ss_pred CCcEEEEec-CCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCch
Q 037574 303 EGSRILVTR-RGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLP 381 (961)
Q Consensus 303 ~gs~ilvTt-R~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~P 381 (961)
....+|++| +...+..... .+...+.+.+++.++....+.+.+-..+... -.+.+..|++.++|.+
T Consensus 148 ~~~v~Il~tt~~~kl~~tI~---------SRc~~i~f~~ls~~el~~~L~~i~k~egi~i----d~~al~~La~~s~G~l 214 (486)
T PRK14953 148 PRTIFILCTTEYDKIPPTIL---------SRCQRFIFSKPTKEQIKEYLKRICNEEKIEY----EEKALDLLAQASEGGM 214 (486)
T ss_pred CCeEEEEEECCHHHHHHHHH---------HhceEEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCH
Confidence 555555554 3333222111 1126789999999999988887654322211 2345677888999977
Q ss_pred HHHHHHH
Q 037574 382 FAVKILG 388 (961)
Q Consensus 382 Lai~~~~ 388 (961)
-.+....
T Consensus 215 r~al~~L 221 (486)
T PRK14953 215 RDAASLL 221 (486)
T ss_pred HHHHHHH
Confidence 6444443
No 115
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00016 Score=85.18 Aligned_cols=196 Identities=14% Similarity=0.132 Sum_probs=111.8
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVA 242 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 242 (961)
.+++|.+..++.+..++... .-...+.++|+.|+||||+|+.+.+. +. |..+-.....++.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~---------~i~~a~Lf~Gp~G~GKTtlA~~lA~~--l~----c~~~~~~~~~c~~c~~c 80 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEG---------RVAHAYLFTGPRGVGKTSTARILAKA--VN----CTTNDPKGRPCGTCEMC 80 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhC---------CCceEEEEECCCCCCHHHHHHHHHHH--hc----CCCCCCCCCCCccCHHH
Confidence 46899999999998888752 22356789999999999999999863 21 00000000111112222
Q ss_pred HHHHHHhcCCC-----CCcccHHHHHH---HHHHH-hcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCC
Q 037574 243 KAILESLKGSV-----SSQVEMETVLQ---YINEF-VQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRG 313 (961)
Q Consensus 243 ~~il~~l~~~~-----~~~~~~~~~~~---~l~~~-l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 313 (961)
+.|......+. ......+++.+ .+... ..+++-++|+|++. .-..+..+.+...+......+.+|++|.+
T Consensus 81 ~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~-~L~~~a~naLLk~LEepp~~tv~Il~t~~ 159 (585)
T PRK14950 81 RAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVH-MLSTAAFNALLKTLEEPPPHAIFILATTE 159 (585)
T ss_pred HHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChH-hCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 23322211100 01112222222 11111 12556789999995 44556677777777765556666666543
Q ss_pred C-cccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHH
Q 037574 314 E-KNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKIL 387 (961)
Q Consensus 314 ~-~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~ 387 (961)
. .+...+. .....+.+.+++.++....+...+...+... -.+.+..|++.++|.+-.+...
T Consensus 160 ~~kll~tI~---------SR~~~i~f~~l~~~el~~~L~~~a~~egl~i----~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 160 VHKVPATIL---------SRCQRFDFHRHSVADMAAHLRKIAAAEGINL----EPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred hhhhhHHHH---------hccceeeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 2 2222111 1126788999999999988887764332211 2346788999999998654443
No 116
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.89 E-value=9.3e-07 Score=92.92 Aligned_cols=148 Identities=19% Similarity=0.162 Sum_probs=97.2
Q ss_pred ccccCceeEEecCCCCcCCCccchHHHHhcC-CCCCCcCceEEeeecCccc-c-ccccccccCceEEEEeCCCCCCcC--
Q 037574 755 REKLLALGISFDRDDEEGRKKEDDEAVVEGL-ELPSNLESMEMFYYRGESI-S-LMMIMLSNKLRSLTLDRCVNLKQL-- 829 (961)
Q Consensus 755 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~~~~~L~~L~l~~~~~~~~-~-~~~~~~l~~L~~L~L~~~~~~~~l-- 829 (961)
+..|+.|..+.+... ...++..| ...++|+.|.+.++...+- . -+-....+.|+.+++..|....+-
T Consensus 293 c~~lq~l~~s~~t~~--------~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL 364 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDI--------TDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTL 364 (483)
T ss_pred hhHhhhhcccCCCCC--------chHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhH
Confidence 456677777765433 23333333 3347888888888763221 1 111245778999999988654332
Q ss_pred CC-CCCCCccceeeeccccCceEeCccccccCCCCCCCcccccCcccceeeccccccccccccccccCccccccccccee
Q 037574 830 PG-LGGLPSLESLTLRNMKRIEKVGNEFLLTDRTSSTGTAVSAFPKLKSLVFLKMKAWREWKYKTKRGKHYKIMPCLCSL 908 (961)
Q Consensus 830 ~~-l~~lp~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L 908 (961)
-. -.++|.|+.|.|+.|..++.-+...+..+ ..+...|+.|.+.++|.+.+-.. +.+..+++|+.+
T Consensus 365 ~sls~~C~~lr~lslshce~itD~gi~~l~~~--------~c~~~~l~~lEL~n~p~i~d~~L-----e~l~~c~~Leri 431 (483)
T KOG4341|consen 365 ASLSRNCPRLRVLSLSHCELITDEGIRHLSSS--------SCSLEGLEVLELDNCPLITDATL-----EHLSICRNLERI 431 (483)
T ss_pred hhhccCCchhccCChhhhhhhhhhhhhhhhhc--------cccccccceeeecCCCCchHHHH-----HHHhhCccccee
Confidence 22 34689999999999987776544433322 24667889999999988766543 355688999999
Q ss_pred cccccccCcCCCCCC
Q 037574 909 TIGYCNELEMLPAEH 923 (961)
Q Consensus 909 ~i~~C~~L~~lp~~~ 923 (961)
++.+|.....-|+..
T Consensus 432 ~l~~~q~vtk~~i~~ 446 (483)
T KOG4341|consen 432 ELIDCQDVTKEAISR 446 (483)
T ss_pred eeechhhhhhhhhHH
Confidence 999998887666543
No 117
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00026 Score=82.59 Aligned_cols=201 Identities=13% Similarity=0.162 Sum_probs=110.2
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEE-eCCCCCHHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVS-ASCPRDEIRV 241 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-~s~~~~~~~~ 241 (961)
.+++|.+..+..+..++... .-...+.++|+.|+||||+|+.+.+.-.-...++.-.|.. +...+..-..
T Consensus 16 ~eivGQe~i~~~L~~~i~~~---------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~s 86 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMD---------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECES 86 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcC---------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHH
Confidence 36899999999888888652 2235588999999999999998876311111111001110 0011111111
Q ss_pred HHHHHHHhcCC-----CCCcccHHHHHHHHHHH----hcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEec-
Q 037574 242 AKAILESLKGS-----VSSQVEMETVLQYINEF----VQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTR- 311 (961)
Q Consensus 242 ~~~il~~l~~~-----~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTt- 311 (961)
.+.+...-..+ .......+++...+... ..+++-++|+|++. .......+.+...+..-...+.+|++|
T Consensus 87 C~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad-~Lt~~a~naLLK~LEePp~~tv~IL~t~ 165 (620)
T PRK14954 87 CRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVH-MLSTAAFNAFLKTLEEPPPHAIFIFATT 165 (620)
T ss_pred HHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChh-hcCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 11111100000 00111233333322222 23556689999996 445566777888887755556655544
Q ss_pred CCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchH-HHHH
Q 037574 312 RGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPF-AVKI 386 (961)
Q Consensus 312 R~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PL-ai~~ 386 (961)
+...+...+. .+...+++.+++.++....+.+.+...+.. --.+.++.|++.++|..- |+..
T Consensus 166 ~~~kLl~TI~---------SRc~~vef~~l~~~ei~~~L~~i~~~egi~----I~~eal~~La~~s~Gdlr~al~e 228 (620)
T PRK14954 166 ELHKIPATIA---------SRCQRFNFKRIPLDEIQSQLQMICRAEGIQ----IDADALQLIARKAQGSMRDAQSI 228 (620)
T ss_pred ChhhhhHHHH---------hhceEEecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHhCCCHHHHHHH
Confidence 3333322211 112789999999999988887765432211 123467889999999654 4443
No 118
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.87 E-value=0.00052 Score=71.35 Aligned_cols=203 Identities=16% Similarity=0.160 Sum_probs=119.5
Q ss_pred HHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhh--c--cCceeEEEEeCCCCCHHHHHHHH
Q 037574 170 VEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVK--A--NFDKRIWVSASCPRDEIRVAKAI 245 (961)
Q Consensus 170 ~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~--~F~~~~wv~~s~~~~~~~~~~~i 245 (961)
+.++++.+++..+.. .+.+-+.|||..|.|||++++++.+..-.. . .--.++.|.+...++...+...|
T Consensus 44 ~~L~~L~~Ll~~P~~-------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~I 116 (302)
T PF05621_consen 44 EALDRLEELLEYPKR-------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAI 116 (302)
T ss_pred HHHHHHHHHHhCCcc-------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHH
Confidence 445666666665433 667889999999999999999998631111 0 01146677788889999999999
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHHhcC-CceEEEeecccCC--CChhhHHHHHHh---ccCCCCCcEEEEecCCCccccc
Q 037574 246 LESLKGSVSSQVEMETVLQYINEFVQG-KKVLLVLDDVWWN--ACPRYWEQLMYS---LKSGSEGSRILVTRRGEKNGTN 319 (961)
Q Consensus 246 l~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdvw~~--~~~~~~~~l~~~---l~~~~~gs~ilvTtR~~~v~~~ 319 (961)
+.+++...........+.....+.++. +--+||+|++..- .....-..+... +.+.-.-+-|.|-|+..--+
T Consensus 117 L~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~a-- 194 (302)
T PF05621_consen 117 LEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRA-- 194 (302)
T ss_pred HHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHH--
Confidence 999999876666666666665566643 4458999999510 011112222333 33333445566655532211
Q ss_pred ccccccccCCCCCcceeecCCCChHH-HHHHHHHH--HcCCCCCCCccchHHHHHHHHHhcCCchHHHH
Q 037574 320 MTEIGLGEKDGTNMTEIGLGELSAKE-CRSLFRQI--AFDGRSSDDREKFEPIGRLVVGKCKGLPFAVK 385 (961)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~l~~L~~~~-~~~Lf~~~--~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~ 385 (961)
+.+.+ --.+++.++.++.-..++ ...|+... .+.-.. .+.-...++++.|...++|+.=-+.
T Consensus 195 l~~D~---QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~-~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 195 LRTDP---QLASRFEPFELPRWELDEEFRRLLASFERALPLRK-PSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred hccCH---HHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCC-CCCCCCHHHHHHHHHHcCCchHHHH
Confidence 11110 001233666676665444 44444332 122222 2223456789999999999874333
No 119
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.86 E-value=9.5e-06 Score=91.98 Aligned_cols=125 Identities=26% Similarity=0.420 Sum_probs=79.4
Q ss_pred cCCCCccEEEeccCCCccccccchhhhccCC-cccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcccCCcc
Q 037574 569 YNQKKLRSLGVEHGGGFMNGIVLSKVFDQLT-CLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKKLPKT 647 (961)
Q Consensus 569 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~ 647 (961)
...+.+..|.+.++. +. . ++.....+. +|+.|+++++ . +..+|..++.+++|+.|+++.|. +..+|..
T Consensus 113 ~~~~~l~~L~l~~n~--i~-~-i~~~~~~~~~nL~~L~l~~N-----~-i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~ 181 (394)
T COG4886 113 LELTNLTSLDLDNNN--IT-D-IPPLIGLLKSNLKELDLSDN-----K-IESLPSPLRNLPNLKNLDLSFND-LSDLPKL 181 (394)
T ss_pred hcccceeEEecCCcc--cc-c-Cccccccchhhccccccccc-----c-hhhhhhhhhccccccccccCCch-hhhhhhh
Confidence 334556666666654 21 1 222233443 6777777776 3 66666667777777777777777 7777776
Q ss_pred hhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcccccCCcCCCCCCCCCcCC
Q 037574 648 LCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLSYMPKGIERWSCLRTLS 705 (961)
Q Consensus 648 i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~~~p~~i~~L~~L~~L~ 705 (961)
.+.+.+|+.|++++|. +..+|..+..+..|+.|.++.|.+...+..+.+++++..|.
T Consensus 182 ~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~ 238 (394)
T COG4886 182 LSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLE 238 (394)
T ss_pred hhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccc
Confidence 6677777777777766 77777666666667777776665555555566666666554
No 120
>CHL00181 cbbX CbbX; Provisional
Probab=97.86 E-value=0.00029 Score=74.92 Aligned_cols=144 Identities=10% Similarity=0.096 Sum_probs=75.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCc
Q 037574 195 PVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKK 274 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 274 (961)
..+.++|++|+||||+|+.+++.....+.-...-|+.++ ...+ .....+.. .......+.+ . ..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~----~~~l----~~~~~g~~-----~~~~~~~l~~-a--~g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT----RDDL----VGQYIGHT-----APKTKEVLKK-A--MG 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec----HHHH----HHHHhccc-----hHHHHHHHHH-c--cC
Confidence 458899999999999999998732111111112245544 2222 22221111 0111222222 2 23
Q ss_pred eEEEeecccCC--------CChhhHHHHHHhccCCCCCcEEEEecCCCcccccccccccccCCCCCcceeecCCCChHHH
Q 037574 275 VLLVLDDVWWN--------ACPRYWEQLMYSLKSGSEGSRILVTRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKEC 346 (961)
Q Consensus 275 ~LlVlDdvw~~--------~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~ 346 (961)
-+|++|++..- ...+.-+.+...+.......+||+++....+.......+-. ...-...+.+++++.+|.
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L--~sR~~~~i~F~~~t~~el 201 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGL--SSRIANHVDFPDYTPEEL 201 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHH--HHhCCceEEcCCcCHHHH
Confidence 49999999510 01233344555555555556777776543332211100000 001115799999999999
Q ss_pred HHHHHHHHcC
Q 037574 347 RSLFRQIAFD 356 (961)
Q Consensus 347 ~~Lf~~~~~~ 356 (961)
.+++.+.+-.
T Consensus 202 ~~I~~~~l~~ 211 (287)
T CHL00181 202 LQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHH
Confidence 9999887643
No 121
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.85 E-value=0.00022 Score=78.05 Aligned_cols=150 Identities=15% Similarity=0.182 Sum_probs=88.0
Q ss_pred CCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHH
Q 037574 162 PLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRV 241 (961)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 241 (961)
-.+++|.+...+.+..++... .-..++.++|++|+||||+|+.+++. .... ...++.+. .. ...
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~---------~~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~-~~-~~~ 83 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKG---------RIPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSD-CR-IDF 83 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcC---------CCCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCc-cc-HHH
Confidence 356899999999999998752 23467777999999999999999883 2222 23444443 11 111
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCC-ChhhHHHHHHhccCCCCCcEEEEecCCCc-cccc
Q 037574 242 AKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNA-CPRYWEQLMYSLKSGSEGSRILVTRRGEK-NGTN 319 (961)
Q Consensus 242 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~ 319 (961)
.+..+..+... ..+.+.+-+||+||+. .. ..+..+.+...+.....++.+|+||.... +...
T Consensus 84 i~~~l~~~~~~---------------~~~~~~~~vliiDe~d-~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~ 147 (316)
T PHA02544 84 VRNRLTRFAST---------------VSLTGGGKVIIIDEFD-RLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEP 147 (316)
T ss_pred HHHHHHHHHHh---------------hcccCCCeEEEEECcc-cccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHH
Confidence 11111111000 0012345689999995 22 23334455555665566788888886443 1111
Q ss_pred ccccccccCCCCCcceeecCCCChHHHHHHHHH
Q 037574 320 MTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQ 352 (961)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 352 (961)
+. .+...+.++..+.++..+++..
T Consensus 148 l~---------sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 148 LR---------SRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred HH---------hhceEEEeCCCCHHHHHHHHHH
Confidence 11 1225677777788887766554
No 122
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.84 E-value=0.00073 Score=77.15 Aligned_cols=181 Identities=14% Similarity=0.127 Sum_probs=111.3
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChh--hhcc----------------C
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSD--VKAN----------------F 224 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~--~~~~----------------F 224 (961)
.+++|-+...+.+...+... .-..+..++|+.|+||||+|+.+.+.-- .... +
T Consensus 14 deiiGqe~v~~~L~~~I~~g---------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~ 84 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN---------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENR 84 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC---------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcC
Confidence 35899999999998888652 2235678999999999999998866210 0000 1
Q ss_pred c-eeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH----hcCCceEEEeecccCCCChhhHHHHHHhcc
Q 037574 225 D-KRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEF----VQGKKVLLVLDDVWWNACPRYWEQLMYSLK 299 (961)
Q Consensus 225 ~-~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~ 299 (961)
. .++.+..+... ..+++.+.+... ..+++-++|+|++. ..+.+..+.+...+.
T Consensus 85 h~dv~eldaas~~---------------------gId~IRelie~~~~~P~~~~~KVvIIDEad-~Lt~~A~NALLK~LE 142 (535)
T PRK08451 85 HIDIIEMDAASNR---------------------GIDDIRELIEQTKYKPSMARFKIFIIDEVH-MLTKEAFNALLKTLE 142 (535)
T ss_pred CCeEEEecccccc---------------------CHHHHHHHHHHHhhCcccCCeEEEEEECcc-cCCHHHHHHHHHHHh
Confidence 0 11122211111 122222222210 12556689999996 556677778888887
Q ss_pred CCCCCcEEEEecCCC-cccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcC
Q 037574 300 SGSEGSRILVTRRGE-KNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCK 378 (961)
Q Consensus 300 ~~~~gs~ilvTtR~~-~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~ 378 (961)
.....+.+|++|.+. .+...+. .+...+++.+++.++....+.+.+-..+.. --.+.++.|++.++
T Consensus 143 Epp~~t~FIL~ttd~~kL~~tI~---------SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~----i~~~Al~~Ia~~s~ 209 (535)
T PRK08451 143 EPPSYVKFILATTDPLKLPATIL---------SRTQHFRFKQIPQNSIISHLKTILEKEGVS----YEPEALEILARSGN 209 (535)
T ss_pred hcCCceEEEEEECChhhCchHHH---------hhceeEEcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcC
Confidence 766667766666443 2221111 123789999999999999988766433321 12346788999999
Q ss_pred CchHHHHHH
Q 037574 379 GLPFAVKIL 387 (961)
Q Consensus 379 G~PLai~~~ 387 (961)
|.+--+...
T Consensus 210 GdlR~alnl 218 (535)
T PRK08451 210 GSLRDTLTL 218 (535)
T ss_pred CcHHHHHHH
Confidence 998544443
No 123
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00053 Score=80.60 Aligned_cols=181 Identities=10% Similarity=0.119 Sum_probs=110.6
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChh---------------------hh
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSD---------------------VK 221 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---------------------~~ 221 (961)
.+++|.+...+.+..++... .-...+.++|+.|+||||+|+.+.+... ..
T Consensus 17 ~~viGq~~~~~~L~~~i~~~---------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~ 87 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATN---------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQ 87 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcC---------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcC
Confidence 36899999999999998752 2245688999999999999988866210 01
Q ss_pred ccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC
Q 037574 222 ANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG 301 (961)
Q Consensus 222 ~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~ 301 (961)
.+|+. ..+..+....... ++++++++... -..+++-++|+|++. ..+...++.+...+..-
T Consensus 88 ~~~n~-~~ld~~~~~~vd~-Ir~li~~~~~~----------------P~~~~~KVvIIdea~-~Ls~~a~naLLK~LEep 148 (614)
T PRK14971 88 RSYNI-HELDAASNNSVDD-IRNLIEQVRIP----------------PQIGKYKIYIIDEVH-MLSQAAFNAFLKTLEEP 148 (614)
T ss_pred CCCce-EEecccccCCHHH-HHHHHHHHhhC----------------cccCCcEEEEEECcc-cCCHHHHHHHHHHHhCC
Confidence 12332 1222221111111 11222221110 012456688999996 55667788888888876
Q ss_pred CCCcEEEEec-CCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCc
Q 037574 302 SEGSRILVTR-RGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGL 380 (961)
Q Consensus 302 ~~gs~ilvTt-R~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~ 380 (961)
...+.+|++| ....+...+. .+...+++.+++.++....+.+.+-..+... -.+.+..|++.++|.
T Consensus 149 p~~tifIL~tt~~~kIl~tI~---------SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i----~~~al~~La~~s~gd 215 (614)
T PRK14971 149 PSYAIFILATTEKHKILPTIL---------SRCQIFDFNRIQVADIVNHLQYVASKEGITA----EPEALNVIAQKADGG 215 (614)
T ss_pred CCCeEEEEEeCCchhchHHHH---------hhhheeecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCC
Confidence 5666665544 4444433221 1227899999999999998887664332211 224578899999997
Q ss_pred hHHH
Q 037574 381 PFAV 384 (961)
Q Consensus 381 PLai 384 (961)
.--+
T Consensus 216 lr~a 219 (614)
T PRK14971 216 MRDA 219 (614)
T ss_pred HHHH
Confidence 7533
No 124
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=0.00053 Score=77.84 Aligned_cols=183 Identities=13% Similarity=0.132 Sum_probs=107.0
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhh---------------------
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVK--------------------- 221 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--------------------- 221 (961)
.+++|.+..+..+..++... .-...+.++|+.|+||||+|+.+.+..--.
T Consensus 17 ~diiGq~~~v~~L~~~i~~~---------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~ 87 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFN---------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSG 87 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcC---------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcC
Confidence 46899999999999988752 123568899999999999999987621000
Q ss_pred ccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-HhcCCceEEEeecccCCCChhhHHHHHHhccC
Q 037574 222 ANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINE-FVQGKKVLLVLDDVWWNACPRYWEQLMYSLKS 300 (961)
Q Consensus 222 ~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~ 300 (961)
.+++ .+++........ .+..++.+.+.. ...+++-++|+|++. .......+.+...+..
T Consensus 88 ~~~d-~~~i~g~~~~gi------------------d~ir~i~~~l~~~~~~~~~kvvIIdead-~lt~~~~n~LLk~lEe 147 (451)
T PRK06305 88 TSLD-VLEIDGASHRGI------------------EDIRQINETVLFTPSKSRYKIYIIDEVH-MLTKEAFNSLLKTLEE 147 (451)
T ss_pred CCCc-eEEeeccccCCH------------------HHHHHHHHHHHhhhhcCCCEEEEEecHH-hhCHHHHHHHHHHhhc
Confidence 0111 111111111111 111111111111 123567789999995 3344556667777776
Q ss_pred CCCCcEEEEecC-CCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCC
Q 037574 301 GSEGSRILVTRR-GEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKG 379 (961)
Q Consensus 301 ~~~gs~ilvTtR-~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G 379 (961)
....+.+|++|. ...+...+. .+...+++.++++++....+.+.+-..+.. --.+.++.|++.++|
T Consensus 148 p~~~~~~Il~t~~~~kl~~tI~---------sRc~~v~f~~l~~~el~~~L~~~~~~eg~~----i~~~al~~L~~~s~g 214 (451)
T PRK06305 148 PPQHVKFFLATTEIHKIPGTIL---------SRCQKMHLKRIPEETIIDKLALIAKQEGIE----TSREALLPIARAAQG 214 (451)
T ss_pred CCCCceEEEEeCChHhcchHHH---------HhceEEeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCC
Confidence 555666666653 223322211 112789999999999998888765432211 123467889999999
Q ss_pred chH-HHHHH
Q 037574 380 LPF-AVKIL 387 (961)
Q Consensus 380 ~PL-ai~~~ 387 (961)
.+- |+..+
T Consensus 215 dlr~a~~~L 223 (451)
T PRK06305 215 SLRDAESLY 223 (451)
T ss_pred CHHHHHHHH
Confidence 764 44443
No 125
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.81 E-value=0.0003 Score=78.60 Aligned_cols=169 Identities=12% Similarity=0.111 Sum_probs=91.4
Q ss_pred CCCccccchHHHHHHHHHHhCCCCCCc---CCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCC
Q 037574 161 DPLEFHGRNVEKKNILQLLKGESSDEE---SGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRD 237 (961)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~~~~~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 237 (961)
...++.|++..++++.+.+...-...+ .-+....+-|.++|++|+|||++|+.+++. .... |+.++.
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~--- 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG--- 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh---
Confidence 345688999999999887643211000 000133566899999999999999999983 3322 233321
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh-cCCceEEEeecccCC----------CChhhHHHHHHhccC-----C
Q 037574 238 EIRVAKAILESLKGSVSSQVEMETVLQYINEFV-QGKKVLLVLDDVWWN----------ACPRYWEQLMYSLKS-----G 301 (961)
Q Consensus 238 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~----------~~~~~~~~l~~~l~~-----~ 301 (961)
..+ .....+ +.....+.+.+.. ...+.+|++||+..- .+.+....+...+.. .
T Consensus 199 -~~l----~~~~~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 199 -SEL----VQKFIG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred -HHH----hHhhcc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 111 111111 0112222222222 356789999999410 011222334443321 1
Q ss_pred CCCcEEEEecCCCccccc-ccccccccCCCCCcceeecCCCChHHHHHHHHHHHcC
Q 037574 302 SEGSRILVTRRGEKNGTN-MTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFD 356 (961)
Q Consensus 302 ~~gs~ilvTtR~~~v~~~-~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 356 (961)
..+..||.||...+.... +-.. +.-...+.+++.+.++-.++|+.+...
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRp------gRfd~~I~v~~P~~~~R~~Il~~~~~~ 317 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRP------GRFDRIIEVPLPDEEGRLEILKIHTRK 317 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCC------ccCceEEEECCCCHHHHHHHHHHHhcc
Confidence 235567777765442221 1100 011156899999999999999987643
No 126
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.00064 Score=79.93 Aligned_cols=197 Identities=16% Similarity=0.165 Sum_probs=110.9
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVA 242 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 242 (961)
.+++|.+.....+..++... .-.+.+.++|+.|+||||+|+.+++..- ....+.. ....+..-...
T Consensus 16 ~~liGq~~i~~~L~~~l~~~---------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~-c~~~~~~----~~~~Cg~C~~C 81 (620)
T PRK14948 16 DELVGQEAIATTLKNALISN---------RIAPAYLFTGPRGTGKTSSARILAKSLN-CLNSDKP----TPEPCGKCELC 81 (620)
T ss_pred hhccChHHHHHHHHHHHHcC---------CCCceEEEECCCCCChHHHHHHHHHHhc-CCCcCCC----CCCCCcccHHH
Confidence 35889999999999888753 2235788999999999999999987311 1011000 00111111222
Q ss_pred HHHHHHhcCC-----CCCcccHHHHHHHHHHH----hcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCC
Q 037574 243 KAILESLKGS-----VSSQVEMETVLQYINEF----VQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRG 313 (961)
Q Consensus 243 ~~il~~l~~~-----~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 313 (961)
+.+......+ .......+.+.+.+... ..+++-++|+|++. .-..+.+..+...+......+.+|++|.+
T Consensus 82 ~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad-~Lt~~a~naLLK~LEePp~~tvfIL~t~~ 160 (620)
T PRK14948 82 RAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECH-MLSTAAFNALLKTLEEPPPRVVFVLATTD 160 (620)
T ss_pred HHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECcc-ccCHHHHHHHHHHHhcCCcCeEEEEEeCC
Confidence 2222111110 00112222222222111 13556689999996 44566778888888765555555555543
Q ss_pred C-cccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHH
Q 037574 314 E-KNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKIL 387 (961)
Q Consensus 314 ~-~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~ 387 (961)
. .+...+. .+...+.+..++.++....+...+...+... -.+.+..|++.++|.+..+..+
T Consensus 161 ~~~llpTIr---------SRc~~~~f~~l~~~ei~~~L~~ia~kegi~i----s~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 161 PQRVLPTII---------SRCQRFDFRRIPLEAMVQHLSEIAEKESIEI----EPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred hhhhhHHHH---------hheeEEEecCCCHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 3 2222111 1127788899999998888877654322111 1245778899999988644433
No 127
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.80 E-value=0.00012 Score=80.54 Aligned_cols=121 Identities=14% Similarity=0.097 Sum_probs=76.2
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVA 242 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 242 (961)
.++++.+...+.+...|... +.+.++|++|+|||++|+.+++.......|+.+.||.+++.++..+++
T Consensus 175 ~d~~i~e~~le~l~~~L~~~------------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI 242 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK------------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFI 242 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC------------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHh
Confidence 35788899999999988742 357889999999999999999854334577888999999888776655
Q ss_pred HHHHHHhcCCCCCcc-cHHHHHHHHHHHh--cCCceEEEeecccCCCChh-hHHHHHHhccC
Q 037574 243 KAILESLKGSVSSQV-EMETVLQYINEFV--QGKKVLLVLDDVWWNACPR-YWEQLMYSLKS 300 (961)
Q Consensus 243 ~~il~~l~~~~~~~~-~~~~~~~~l~~~l--~~kr~LlVlDdvw~~~~~~-~~~~l~~~l~~ 300 (961)
..+. ....... ......+.+.+.. .+++++||+|++. ..+.+ .+..+...+..
T Consensus 243 ~G~r----P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEIN-Rani~kiFGel~~lLE~ 299 (459)
T PRK11331 243 QGYR----PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEIN-RANLSKVFGEVMMLMEH 299 (459)
T ss_pred cccC----CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhh-ccCHHHhhhhhhhhccc
Confidence 3221 0100000 0011222222222 2478999999994 22323 24445544443
No 128
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.77 E-value=0.0011 Score=66.79 Aligned_cols=111 Identities=14% Similarity=0.229 Sum_probs=68.8
Q ss_pred cCCCCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCH
Q 037574 159 AIDPLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDE 238 (961)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 238 (961)
.+.-.+++|.+..++.+++-...--.+ ....-+.+||..|+|||++++.+.+...-++ .--|.+.+.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G------~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~--- 89 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQG------LPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKE--- 89 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcC------CCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHH---
Confidence 445567999999998887643321111 2345577899999999999999988322111 111233221
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccC
Q 037574 239 IRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKS 300 (961)
Q Consensus 239 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~ 300 (961)
+-.+...+.+.++. ...||+|++||+--+.....+..++..+..
T Consensus 90 ----------------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeG 133 (249)
T PF05673_consen 90 ----------------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEG 133 (249)
T ss_pred ----------------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcC
Confidence 11222333333332 457999999999655566778888888764
No 129
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.77 E-value=0.00034 Score=73.87 Aligned_cols=173 Identities=11% Similarity=0.113 Sum_probs=83.4
Q ss_pred ccccchHHHHHHHHHHhCC---CC--CCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCH
Q 037574 164 EFHGRNVEKKNILQLLKGE---SS--DEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDE 238 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~---~~--~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 238 (961)
.++|.+..+++|.+..... .. ..+-...+...-+.++|++|+||||+|+.+++.......-....++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 4788877776664332210 00 00001113456788999999999999999987321111111122333322
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCC--------hhhHHHHHHhccCCCCCcEEEEe
Q 037574 239 IRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNAC--------PRYWEQLMYSLKSGSEGSRILVT 310 (961)
Q Consensus 239 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~--------~~~~~~l~~~l~~~~~gs~ilvT 310 (961)
.++. ...-+. ....+...+.+ . ..-+|++|++. .-. .+..+.+...+........++++
T Consensus 83 ~~l~----~~~~g~-----~~~~~~~~~~~-a--~~~VL~IDE~~-~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila 149 (261)
T TIGR02881 83 ADLV----GEYIGH-----TAQKTREVIKK-A--LGGVLFIDEAY-SLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILA 149 (261)
T ss_pred HHhh----hhhccc-----hHHHHHHHHHh-c--cCCEEEEechh-hhccCCccchHHHHHHHHHHHHhccCCCEEEEec
Confidence 1111 111110 01111222222 1 23489999995 111 22334455444444444455566
Q ss_pred cCCCcccccccccccccCCCCC-cceeecCCCChHHHHHHHHHHHcC
Q 037574 311 RRGEKNGTNMTEIGLGEKDGTN-MTEIGLGELSAKECRSLFRQIAFD 356 (961)
Q Consensus 311 tR~~~v~~~~~~~~~~~~~~~~-~~~~~l~~L~~~~~~~Lf~~~~~~ 356 (961)
+...+........+ .-..+ ...+.+++++.++-.+++++.+..
T Consensus 150 ~~~~~~~~~~~~~p---~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 150 GYSDEMDYFLSLNP---GLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred CCcchhHHHHhcCh---HHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 54433211111000 00011 156889999999999999887643
No 130
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.76 E-value=0.0016 Score=65.26 Aligned_cols=191 Identities=19% Similarity=0.226 Sum_probs=110.1
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeC-CCCCHHHHHHHHHHHhcCCCCC--cccHHHHHHHHHH
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSAS-CPRDEIRVAKAILESLKGSVSS--QVEMETVLQYINE 268 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s-~~~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~l~~ 268 (961)
.+..++.++|.-|+|||.+++..... ..+ +.++=|.+. .......+...++..+..+... ....+...+.+..
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s--~~~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~a 124 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLAS--LNE--DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAA 124 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHh--cCC--CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHH
Confidence 45679999999999999999944331 111 112213333 3456778888888888773311 1223334444444
Q ss_pred Hh-cCCc-eEEEeecccCCCChhhHHHHHHhccCCCCCc---EEEEecCCCcccccccccccccCCCCCcce-eecCCCC
Q 037574 269 FV-QGKK-VLLVLDDVWWNACPRYWEQLMYSLKSGSEGS---RILVTRRGEKNGTNMTEIGLGEKDGTNMTE-IGLGELS 342 (961)
Q Consensus 269 ~l-~~kr-~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs---~ilvTtR~~~v~~~~~~~~~~~~~~~~~~~-~~l~~L~ 342 (961)
.. +++| ..++.||.. ....+..+.++-+......++ +|+..-. +++...+....+.... .+... |++.|++
T Consensus 125 l~~~g~r~v~l~vdEah-~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gq-p~L~~~lr~~~l~e~~-~R~~ir~~l~P~~ 201 (269)
T COG3267 125 LVKKGKRPVVLMVDEAH-DLNDSALEALRLLTNLEEDSSKLLSIVLIGQ-PKLRPRLRLPVLRELE-QRIDIRIELPPLT 201 (269)
T ss_pred HHHhCCCCeEEeehhHh-hhChhHHHHHHHHHhhcccccCceeeeecCC-cccchhhchHHHHhhh-heEEEEEecCCcC
Confidence 44 5777 899999996 555666676665544222222 2333221 2222211110000011 11234 9999999
Q ss_pred hHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHHHhh
Q 037574 343 AKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKILGSL 390 (961)
Q Consensus 343 ~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~~~~ 390 (961)
.++...+++.+..+...+. +---.+....|.....|.|.+|..++..
T Consensus 202 ~~~t~~yl~~~Le~a~~~~-~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPE-PLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred hHHHHHHHHHHHhccCCCc-ccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 9999999988765543222 1122345667888999999999887653
No 131
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.76 E-value=0.00083 Score=77.22 Aligned_cols=155 Identities=10% Similarity=0.146 Sum_probs=90.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhCChhhhccC--ceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcC
Q 037574 195 PVIWILGKEGIGKTALARQVFDDSDVKANF--DKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQG 272 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 272 (961)
..+.|+|..|+|||.|++.+++. ....+ ..+++++ ..++..++...+... .. ..+++.+..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yit------aeef~~el~~al~~~-----~~----~~f~~~y~~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVS------SEEFTNEFINSIRDG-----KG----DSFRRRYRE 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEee------HHHHHHHHHHHHHhc-----cH----HHHHHHhhc
Confidence 45899999999999999999994 33322 2345554 344555555444321 11 123333332
Q ss_pred CceEEEeecccCCCChhhHHH-HHHhccC-CCCCcEEEEecCCCc---------ccccccccccccCCCCCcceeecCCC
Q 037574 273 KKVLLVLDDVWWNACPRYWEQ-LMYSLKS-GSEGSRILVTRRGEK---------NGTNMTEIGLGEKDGTNMTEIGLGEL 341 (961)
Q Consensus 273 kr~LlVlDdvw~~~~~~~~~~-l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~~~~~~~~~~~l~~L 341 (961)
-=+|||||+..-...+.|+. +...+.. ...|..|||||+..- +...+... ..+.|++.
T Consensus 378 -~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~G----------Lvv~I~~P 446 (617)
T PRK14086 378 -MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWG----------LITDVQPP 446 (617)
T ss_pred -CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcC----------ceEEcCCC
Confidence 34788999963223333432 3333332 123556888887531 11122221 68899999
Q ss_pred ChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCch
Q 037574 342 SAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLP 381 (961)
Q Consensus 342 ~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~P 381 (961)
+.+.-.+++++++....-.- -.+++.-|++.+.+..
T Consensus 447 D~EtR~aIL~kka~~r~l~l----~~eVi~yLa~r~~rnv 482 (617)
T PRK14086 447 ELETRIAILRKKAVQEQLNA----PPEVLEFIASRISRNI 482 (617)
T ss_pred CHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHhccCCH
Confidence 99999999998875433222 2456666777766554
No 132
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.76 E-value=0.0003 Score=85.99 Aligned_cols=160 Identities=16% Similarity=0.185 Sum_probs=86.8
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhcc------CceeEE-EEeCCC
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKAN------FDKRIW-VSASCP 235 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~w-v~~s~~ 235 (961)
..++||+.++.++++.|... ...-+.++|.+|+||||+|+.+.+ ++... .+..+| +..+.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~----------~~~n~lLvG~pGvGKTal~~~La~--~i~~~~v~~~l~~~~i~~l~l~~- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRR----------RQNNPILTGEAGVGKTAVVEGLAL--RIAAGDVPPALRNVRLLSLDLGL- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcC----------CcCceeEECCCCCCHHHHHHHHHH--HHhhCCCCccccCCeEEEeehhh-
Confidence 36899999999999998763 334456999999999999999988 33221 122333 22221
Q ss_pred CCHHHHHHHHHHHhcCCCCCcccHHH-HHHHHHHHh-cCCceEEEeecccCCC------ChhhHH-HHHHhccCCCCCcE
Q 037574 236 RDEIRVAKAILESLKGSVSSQVEMET-VLQYINEFV-QGKKVLLVLDDVWWNA------CPRYWE-QLMYSLKSGSEGSR 306 (961)
Q Consensus 236 ~~~~~~~~~il~~l~~~~~~~~~~~~-~~~~l~~~l-~~kr~LlVlDdvw~~~------~~~~~~-~l~~~l~~~~~gs~ 306 (961)
+........+.++ +...+.+.- .+++.+|++|++..-. ...+-. .+...+..+ .-+
T Consensus 254 -------------l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--~l~ 318 (852)
T TIGR03345 254 -------------LQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--ELR 318 (852)
T ss_pred -------------hhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--CeE
Confidence 0000001111222 222222221 2578999999995110 111111 233333322 245
Q ss_pred EEEecCCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHH
Q 037574 307 ILVTRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQI 353 (961)
Q Consensus 307 ilvTtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 353 (961)
+|-||...+....+...+ .-..++..+.+++++.++..++++..
T Consensus 319 ~IgaTT~~e~~~~~~~d~---AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 319 TIAATTWAEYKKYFEKDP---ALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred EEEecCHHHHhhhhhccH---HHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 566665433322221110 00123478999999999999997554
No 133
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.75 E-value=0.00078 Score=76.23 Aligned_cols=166 Identities=16% Similarity=0.207 Sum_probs=91.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccC--ceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhc
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANF--DKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQ 271 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 271 (961)
...+.|+|..|+|||+|++.+++. +.... ..+++++ ..++...+...+... ..+. +.+.++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~-----~~~~----~~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVS------SEKFTNDFVNALRNN-----KMEE----FKEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEE------HHHHHHHHHHHHHcC-----CHHH----HHHHHH
Confidence 456899999999999999999984 33333 2355664 334445555555322 1222 233333
Q ss_pred CCceEEEeecccCCCChhhH-HHHHHhccC-CCCCcEEEEecCCC-cccccccccccccCCCCCcceeecCCCChHHHHH
Q 037574 272 GKKVLLVLDDVWWNACPRYW-EQLMYSLKS-GSEGSRILVTRRGE-KNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRS 348 (961)
Q Consensus 272 ~kr~LlVlDdvw~~~~~~~~-~~l~~~l~~-~~~gs~ilvTtR~~-~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~ 348 (961)
+ .-+||+||+..-...+.+ +.+...+.. ...|..||+|+... .....+... ....-.....+.+++.+.++-..
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~--l~SRl~~g~~v~i~~pd~~~r~~ 275 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEER--LRSRFEWGLVVDIEPPDLETRLA 275 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhh--hhhhccCCeEEEeCCCCHHHHHH
Confidence 2 348999999521111122 223333322 12345678877542 211111110 00000111578999999999999
Q ss_pred HHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHH
Q 037574 349 LFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFA 383 (961)
Q Consensus 349 Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLa 383 (961)
++++.+...... --.++...|++.+.|..-.
T Consensus 276 il~~~~~~~~~~----l~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 276 ILQKKAEEEGLE----LPDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HHHHHHHHcCCC----CCHHHHHHHHHhcCCCHHH
Confidence 999887543221 1245677788888887653
No 134
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.74 E-value=3.1e-05 Score=55.87 Aligned_cols=38 Identities=42% Similarity=0.594 Sum_probs=20.9
Q ss_pred CcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCccc
Q 037574 629 HLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNL 668 (961)
Q Consensus 629 ~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~l 668 (961)
+|++|++++|. ++.+|..+++|++|++|++++|. +..+
T Consensus 2 ~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp T-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC-CSBE
T ss_pred cceEEEccCCC-CcccCchHhCCCCCCEEEecCCC-CCCC
Confidence 45666666665 55665556666666666666554 4443
No 135
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.72 E-value=0.00072 Score=76.67 Aligned_cols=166 Identities=15% Similarity=0.164 Sum_probs=92.8
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhcc-Cc-eeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhc
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKAN-FD-KRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQ 271 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-F~-~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 271 (961)
..-+.|+|..|+|||+|++.+++. +... .. .++|++. .++..++...+... ..+ .+.+...
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~----~f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLN----EFREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHH----HHHHHHH
Confidence 445999999999999999999984 3333 23 4566653 45566666665322 112 2333333
Q ss_pred CCceEEEeecccCCCChhhH-HHHHHhccC-CCCCcEEEEecC-CCcccccccccccccCCCCCcceeecCCCChHHHHH
Q 037574 272 GKKVLLVLDDVWWNACPRYW-EQLMYSLKS-GSEGSRILVTRR-GEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRS 348 (961)
Q Consensus 272 ~kr~LlVlDdvw~~~~~~~~-~~l~~~l~~-~~~gs~ilvTtR-~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~ 348 (961)
.+.-+|++||+..-.+...+ +.+...+.. ...|..||+||. .+.-...+... ...+-.....+.+++.+.++-.+
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~r--L~SR~~~gl~v~i~~pd~e~r~~ 270 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDR--LVSRFQMGLVAKLEPPDEETRKK 270 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHH--HhhHHhcCceEeeCCCCHHHHHH
Confidence 34568999999521111112 223333321 123446888875 33221111110 00000011578899999999999
Q ss_pred HHHHHHcCCCCCCCccchHHHHHHHHHhcCCchH
Q 037574 349 LFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPF 382 (961)
Q Consensus 349 Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PL 382 (961)
++++.+...... --.++...|++.+.|..-
T Consensus 271 IL~~~~~~~~~~----l~~ev~~~Ia~~~~~~~R 300 (440)
T PRK14088 271 IARKMLEIEHGE----LPEEVLNFVAENVDDNLR 300 (440)
T ss_pred HHHHHHHhcCCC----CCHHHHHHHHhccccCHH
Confidence 999887432221 124567778888877643
No 136
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.72 E-value=0.00039 Score=75.86 Aligned_cols=155 Identities=16% Similarity=0.177 Sum_probs=90.1
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQG 272 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 272 (961)
....+.|+|..|.|||.|++.+.+ ....+......+.++ .+....+++..+..+ -...+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~----se~f~~~~v~a~~~~---------~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT----SEDFTNDFVKALRDN---------EMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc----HHHHHHHHHHHHHhh---------hHHHHHHhh--
Confidence 467899999999999999999999 455555432233322 344555555554321 233445544
Q ss_pred CceEEEeecccCCCChhhHHH-HHHhccC-CCCCcEEEEecCCCc---------ccccccccccccCCCCCcceeecCCC
Q 037574 273 KKVLLVLDDVWWNACPRYWEQ-LMYSLKS-GSEGSRILVTRRGEK---------NGTNMTEIGLGEKDGTNMTEIGLGEL 341 (961)
Q Consensus 273 kr~LlVlDdvw~~~~~~~~~~-l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~~~~~~~~~~~l~~L 341 (961)
.-=++++||++--...+.|+. +...|.. ...|-.||+|++... +...+... ..+++.+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~G----------l~~~I~~P 244 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWG----------LVVEIEPP 244 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhce----------eEEeeCCC
Confidence 334888999962112223332 3333332 123348888885432 12222222 78999999
Q ss_pred ChHHHHHHHHHHHcCCCCCCCccchHHHHHHHH
Q 037574 342 SAKECRSLFRQIAFDGRSSDDREKFEPIGRLVV 374 (961)
Q Consensus 342 ~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~ 374 (961)
+.+...+++++.+......-+++...-+++.+-
T Consensus 245 d~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~ 277 (408)
T COG0593 245 DDETRLAILRKKAEDRGIEIPDEVLEFLAKRLD 277 (408)
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Confidence 999999999997654444333333333444433
No 137
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=1.9e-06 Score=86.39 Aligned_cols=166 Identities=20% Similarity=0.275 Sum_probs=108.2
Q ss_pred HhhccccccccCceeEEecCCCCcCCCccchHHHHhcCCCCCCcCceEEeeecCccc--cccccccccCceEEEEeCCCC
Q 037574 748 FKAELSKREKLLALGISFDRDDEEGRKKEDDEAVVEGLELPSNLESMEMFYYRGESI--SLMMIMLSNKLRSLTLDRCVN 825 (961)
Q Consensus 748 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~~~~ 825 (961)
+...|+.+.+|+.|+|.+.... ..+...+....+|+.|+++++.|.+- .-....++..|..|+|++|..
T Consensus 202 l~~iLs~C~kLk~lSlEg~~Ld---------D~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 202 LHGILSQCSKLKNLSLEGLRLD---------DPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFL 272 (419)
T ss_pred HHHHHHHHHhhhhccccccccC---------cHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhc
Confidence 3345667778888888877653 44555666678888888888877654 222334788899999999864
Q ss_pred CCcCC-C--CCCCCccceeeeccccCceEeCccccccCCCCCCCcccccCcccceeeccccccccccccccccCcccccc
Q 037574 826 LKQLP-G--LGGLPSLESLTLRNMKRIEKVGNEFLLTDRTSSTGTAVSAFPKLKSLVFLKMKAWREWKYKTKRGKHYKIM 902 (961)
Q Consensus 826 ~~~l~-~--l~~lp~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 902 (961)
....- . -.--++|+.|.|+||... +...-. .....-+|+|..|+++++..++.-++ .....|
T Consensus 273 ~~~~Vtv~V~hise~l~~LNlsG~rrn--l~~sh~--------~tL~~rcp~l~~LDLSD~v~l~~~~~-----~~~~kf 337 (419)
T KOG2120|consen 273 FTEKVTVAVAHISETLTQLNLSGYRRN--LQKSHL--------STLVRRCPNLVHLDLSDSVMLKNDCF-----QEFFKF 337 (419)
T ss_pred cchhhhHHHhhhchhhhhhhhhhhHhh--hhhhHH--------HHHHHhCCceeeeccccccccCchHH-----HHHHhc
Confidence 43321 1 112378899999987521 111100 00134689999999999888776433 234589
Q ss_pred cccceecccccccCc---CCCCCCCCCCCCeEEEccccc
Q 037574 903 PCLCSLTIGYCNELE---MLPAEHFPDTLKDLKIISCSK 938 (961)
Q Consensus 903 p~L~~L~i~~C~~L~---~lp~~~l~~sL~~L~i~~c~~ 938 (961)
+.|++|.++.|-.+. -+-....|+ |.+|++.||-.
T Consensus 338 ~~L~~lSlsRCY~i~p~~~~~l~s~ps-l~yLdv~g~vs 375 (419)
T KOG2120|consen 338 NYLQHLSLSRCYDIIPETLLELNSKPS-LVYLDVFGCVS 375 (419)
T ss_pred chheeeehhhhcCCChHHeeeeccCcc-eEEEEeccccC
Confidence 999999999997653 111222366 99999999864
No 138
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.68 E-value=0.00047 Score=83.74 Aligned_cols=163 Identities=20% Similarity=0.242 Sum_probs=87.5
Q ss_pred ccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChh---hhccC-ceeEEEEeCCCCCHH
Q 037574 164 EFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSD---VKANF-DKRIWVSASCPRDEI 239 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~F-~~~~wv~~s~~~~~~ 239 (961)
.++||+.+++++++.|... ...-+.++|++|+|||++|+.+++... +...+ +..+|.. +..
T Consensus 183 ~~igr~~ei~~~~~~L~~~----------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~ 247 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRR----------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMG 247 (731)
T ss_pred cccCcHHHHHHHHHHHhcC----------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHH
Confidence 5899999999999988753 233467999999999999999988321 11111 3344421 111
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHh-cCCceEEEeecccCC-------C-ChhhHHHHHHhccCCCCCcEEEEe
Q 037574 240 RVAKAILESLKGSVSSQVEMETVLQYINEFV-QGKKVLLVLDDVWWN-------A-CPRYWEQLMYSLKSGSEGSRILVT 310 (961)
Q Consensus 240 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~-------~-~~~~~~~l~~~l~~~~~gs~ilvT 310 (961)
.+ +.. . ....+.++....+.+.+ ..++.+|++|++..- . +.+.-+.+...+..+ .-++|-+
T Consensus 248 ~l----~a~---~-~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--~i~~Iga 317 (731)
T TIGR02639 248 SL----LAG---T-KYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--KLRCIGS 317 (731)
T ss_pred HH----hhh---c-cccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--CeEEEEe
Confidence 11 100 0 00112233333333333 346889999999510 0 111223344444322 2244444
Q ss_pred cCCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHH
Q 037574 311 RRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIA 354 (961)
Q Consensus 311 tR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 354 (961)
|...+....+...+ .-..++..+.+++++.++..++++...
T Consensus 318 Tt~~e~~~~~~~d~---al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 318 TTYEEYKNHFEKDR---ALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred cCHHHHHHHhhhhH---HHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 44322211111100 001233789999999999999998654
No 139
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.67 E-value=0.00082 Score=71.55 Aligned_cols=143 Identities=11% Similarity=0.086 Sum_probs=74.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCc
Q 037574 195 PVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKK 274 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 274 (961)
.-+.++|++|+||||+|+.+++.....+......|+.++. .+ ++..+.+.. .......+.+ . ..
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~~-----~~~~~~~~~~-a--~~ 122 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGHT-----APKTKEILKR-A--MG 122 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhcccc-----hHHHHHHHHH-c--cC
Confidence 3588999999999999988776321111111123455442 12 222222211 1112222222 2 33
Q ss_pred eEEEeecccCC---C-----ChhhHHHHHHhccCCCCCcEEEEecCCCcccccccccccccCCCCCcceeecCCCChHHH
Q 037574 275 VLLVLDDVWWN---A-----CPRYWEQLMYSLKSGSEGSRILVTRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKEC 346 (961)
Q Consensus 275 ~LlVlDdvw~~---~-----~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~ 346 (961)
-+|++|++..- . ..+.++.+...+.....+.+||+++............+-. ...-...+.+++++.+|-
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L--~sR~~~~i~fp~l~~edl 200 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGF--SSRVAHHVDFPDYSEAEL 200 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHH--HhhCCcEEEeCCcCHHHH
Confidence 68999999410 0 1233455666666555566677766543221111000000 000115689999999999
Q ss_pred HHHHHHHHc
Q 037574 347 RSLFRQIAF 355 (961)
Q Consensus 347 ~~Lf~~~~~ 355 (961)
..++...+-
T Consensus 201 ~~I~~~~l~ 209 (284)
T TIGR02880 201 LVIAGLMLK 209 (284)
T ss_pred HHHHHHHHH
Confidence 999988763
No 140
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.66 E-value=0.0001 Score=80.12 Aligned_cols=31 Identities=26% Similarity=0.653 Sum_probs=15.3
Q ss_pred cccceecccccccCcCCCCCCCCCCCCeEEEcc
Q 037574 903 PCLCSLTIGYCNELEMLPAEHFPDTLKDLKIIS 935 (961)
Q Consensus 903 p~L~~L~i~~C~~L~~lp~~~l~~sL~~L~i~~ 935 (961)
++|+.|.|.+|..+. +|. .+|.+|+.|.+..
T Consensus 156 sSLk~L~Is~c~~i~-LP~-~LP~SLk~L~ls~ 186 (426)
T PRK15386 156 PSLKTLSLTGCSNII-LPE-KLPESLQSITLHI 186 (426)
T ss_pred CcccEEEecCCCccc-Ccc-cccccCcEEEecc
Confidence 356666666555332 332 1444555555544
No 141
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.66 E-value=0.0014 Score=76.22 Aligned_cols=194 Identities=12% Similarity=0.122 Sum_probs=110.3
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVA 242 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 242 (961)
.+++|-+..+..+..++... .-.+.+.++|+.|+||||+|+.+++..--...... . ++..-..-
T Consensus 16 ~diiGqe~iv~~L~~~i~~~---------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~----pC~~C~~C 79 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESN---------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---M----PCGECSSC 79 (563)
T ss_pred HHccCcHHHHHHHHHHHHcC---------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---C----CCccchHH
Confidence 36899999999999988753 23457889999999999999999873110100000 0 00000000
Q ss_pred HHHHHHhcC-----CCCCcccHHHHHHHH---HH-HhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCC
Q 037574 243 KAILESLKG-----SVSSQVEMETVLQYI---NE-FVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRG 313 (961)
Q Consensus 243 ~~il~~l~~-----~~~~~~~~~~~~~~l---~~-~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 313 (961)
+.|...-.. ........+++.+.. .. -..+++-++|+|++. ..+...++.+...+......+.+|.+|..
T Consensus 80 ~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~-~Ls~~a~naLLK~LEepp~~~vfI~~tte 158 (563)
T PRK06647 80 KSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVH-MLSNSAFNALLKTIEEPPPYIVFIFATTE 158 (563)
T ss_pred HHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChh-hcCHHHHHHHHHhhccCCCCEEEEEecCC
Confidence 111100000 000011222222211 11 124566789999996 44566777888787765566666666533
Q ss_pred -CcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHH
Q 037574 314 -EKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKI 386 (961)
Q Consensus 314 -~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~ 386 (961)
..+...+. .+...+++.+++.++..+.+.+.+...+.. --.+.+..|++.++|.+-.+..
T Consensus 159 ~~kL~~tI~---------SRc~~~~f~~l~~~el~~~L~~i~~~egi~----id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 159 VHKLPATIK---------SRCQHFNFRLLSLEKIYNMLKKVCLEDQIK----YEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred hHHhHHHHH---------HhceEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHH
Confidence 22222111 122678999999999998888876433321 1234577788999998854433
No 142
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.66 E-value=0.0021 Score=69.16 Aligned_cols=196 Identities=14% Similarity=0.215 Sum_probs=113.3
Q ss_pred ccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCCh---h---------h-hccCceeEEE
Q 037574 164 EFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDS---D---------V-KANFDKRIWV 230 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~---~---------~-~~~F~~~~wv 230 (961)
+++|.+..++.+...+... .-.+...++|+.|+||+++|..+.+.- . + ...+.-..|+
T Consensus 5 ~iiGq~~~~~~L~~~i~~~---------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i 75 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQN---------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWV 75 (314)
T ss_pred HhCCHHHHHHHHHHHHHhC---------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEE
Confidence 5889999999999988763 224789999999999999998876521 0 0 1122233454
Q ss_pred EeCCCCCHHHHHHHHHHHhc--CCCCCcccHHHHHHHHHHHh-----cCCceEEEeecccCCCChhhHHHHHHhccCCCC
Q 037574 231 SASCPRDEIRVAKAILESLK--GSVSSQVEMETVLQYINEFV-----QGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSE 303 (961)
Q Consensus 231 ~~s~~~~~~~~~~~il~~l~--~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~ 303 (961)
.-....+...+-..-++..+ .........+++ +.+.+.+ .+.+-++|+|++. ..+......+...+....
T Consensus 76 ~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae-~m~~~aaNaLLK~LEEPp- 152 (314)
T PRK07399 76 EPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAE-TMNEAAANALLKTLEEPG- 152 (314)
T ss_pred eccccccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchh-hcCHHHHHHHHHHHhCCC-
Confidence 32110110001111111211 111112223332 2333333 3567799999995 556667778888887655
Q ss_pred CcEEEEecC-CCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchH
Q 037574 304 GSRILVTRR-GEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPF 382 (961)
Q Consensus 304 gs~ilvTtR-~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PL 382 (961)
.+.+|++|. ...+...+. ++...+++.++++++..+.+.+...... .......++..++|.|.
T Consensus 153 ~~~fILi~~~~~~Ll~TI~---------SRcq~i~f~~l~~~~~~~~L~~~~~~~~-------~~~~~~~l~~~a~Gs~~ 216 (314)
T PRK07399 153 NGTLILIAPSPESLLPTIV---------SRCQIIPFYRLSDEQLEQVLKRLGDEEI-------LNINFPELLALAQGSPG 216 (314)
T ss_pred CCeEEEEECChHhCcHHHH---------hhceEEecCCCCHHHHHHHHHHhhcccc-------chhHHHHHHHHcCCCHH
Confidence 345555444 333333221 2238999999999999999988642111 01113578899999997
Q ss_pred HHHHH
Q 037574 383 AVKIL 387 (961)
Q Consensus 383 ai~~~ 387 (961)
.+..+
T Consensus 217 ~al~~ 221 (314)
T PRK07399 217 AAIAN 221 (314)
T ss_pred HHHHH
Confidence 66543
No 143
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.66 E-value=0.0011 Score=76.12 Aligned_cols=166 Identities=14% Similarity=0.191 Sum_probs=92.0
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCc--eeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhc
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFD--KRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQ 271 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 271 (961)
...+.|+|..|+|||+|++.+++. ....+. .+++++. ..+...+...+... ..+ .+.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~----~~~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTS------EKFTNDFVNALRNN-----TME----EFKEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHHcC-----cHH----HHHHHHh
Confidence 456899999999999999999994 444432 3455653 33444455554321 112 2333333
Q ss_pred CCceEEEeecccCCCChhhH-HHHHHhccC-CCCCcEEEEecCCCc-ccccccccccccCCCCCcceeecCCCChHHHHH
Q 037574 272 GKKVLLVLDDVWWNACPRYW-EQLMYSLKS-GSEGSRILVTRRGEK-NGTNMTEIGLGEKDGTNMTEIGLGELSAKECRS 348 (961)
Q Consensus 272 ~kr~LlVlDdvw~~~~~~~~-~~l~~~l~~-~~~gs~ilvTtR~~~-v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~ 348 (961)
+.-+||+||+..-...+.+ +.+...+.. ...|..||+||.... ....+... + ...-.....+++++.+.++-.+
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~-l-~SRl~~gl~v~i~~pd~~~r~~ 287 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEER-L-RSRFEWGLTVDIEPPDLETRIA 287 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHH-H-HhHhcCCeeEEecCCCHHHHHH
Confidence 3448999999521111112 233333321 123445888776432 11101000 0 0000111579999999999999
Q ss_pred HHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHH
Q 037574 349 LFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFA 383 (961)
Q Consensus 349 Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLa 383 (961)
++++.+-.... .--.++...|++.+.|..-.
T Consensus 288 il~~~~~~~~~----~l~~e~l~~ia~~~~~~~R~ 318 (450)
T PRK00149 288 ILKKKAEEEGI----DLPDEVLEFIAKNITSNVRE 318 (450)
T ss_pred HHHHHHHHcCC----CCCHHHHHHHHcCcCCCHHH
Confidence 99998753221 12245677888888887653
No 144
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.00076 Score=73.02 Aligned_cols=98 Identities=13% Similarity=0.073 Sum_probs=67.0
Q ss_pred CCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCc-ccccccccccccCCCCCcceeecCCCChHHHHHHH
Q 037574 272 GKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEK-NGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLF 350 (961)
Q Consensus 272 ~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf 350 (961)
+++-++|+|++. .-+......+...+.....++.+|+||.+.. +...+. ++...+.+.+++.+++.+.+
T Consensus 105 ~~~kv~iI~~a~-~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~---------SRc~~~~~~~~~~~~~~~~L 174 (328)
T PRK05707 105 GGRKVVLIEPAE-AMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIK---------SRCQQQACPLPSNEESLQWL 174 (328)
T ss_pred CCCeEEEECChh-hCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHH---------hhceeeeCCCcCHHHHHHHH
Confidence 445566789996 5567778888888887666777777776654 332221 12278999999999999988
Q ss_pred HHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHH
Q 037574 351 RQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKIL 387 (961)
Q Consensus 351 ~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~ 387 (961)
.... ... ..+.+..++..++|.|+.+..+
T Consensus 175 ~~~~-~~~-------~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 175 QQAL-PES-------DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHhc-ccC-------ChHHHHHHHHHcCCCHHHHHHH
Confidence 7653 111 1223567789999999866555
No 145
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.65 E-value=0.00099 Score=67.35 Aligned_cols=177 Identities=18% Similarity=0.197 Sum_probs=103.4
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVA 242 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 242 (961)
.+|+|.+.-++++.-++....... ...--+.++|++|.||||||.-+++ .....+ -++......-..-+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~-----e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn~----k~tsGp~leK~gDl 94 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRG-----EALDHVLLFGPPGLGKTTLAHIIAN--ELGVNL----KITSGPALEKPGDL 94 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcC-----CCcCeEEeeCCCCCcHHHHHHHHHH--HhcCCe----EecccccccChhhH
Confidence 469999999988877776543222 4577899999999999999999999 343332 12211111111222
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC--------CCCcEE-------
Q 037574 243 KAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG--------SEGSRI------- 307 (961)
Q Consensus 243 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~--------~~gs~i------- 307 (961)
..|+..+. +.=++++|.++ .-.+..-+.+-.+..+. ++++|.
T Consensus 95 aaiLt~Le----------------------~~DVLFIDEIH-rl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 95 AAILTNLE----------------------EGDVLFIDEIH-RLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred HHHHhcCC----------------------cCCeEEEehhh-hcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 22222221 23356677775 32332222222222221 233333
Q ss_pred ----EEecCCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHH
Q 037574 308 ----LVTRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFA 383 (961)
Q Consensus 308 ----lvTtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLa 383 (961)
=-|||.-.+....... -. -+.+++.-+.+|-.+...+.+..-... --.+.+.+|+++..|-|--
T Consensus 152 FTLIGATTr~G~lt~PLrdR------FG--i~~rlefY~~~eL~~Iv~r~a~~l~i~----i~~~~a~eIA~rSRGTPRI 219 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRDR------FG--IIQRLEFYTVEELEEIVKRSAKILGIE----IDEEAALEIARRSRGTPRI 219 (332)
T ss_pred eeEeeeccccccccchhHHh------cC--CeeeeecCCHHHHHHHHHHHHHHhCCC----CChHHHHHHHHhccCCcHH
Confidence 2488876665544322 01 567888899999999998877432221 2234688999999999964
Q ss_pred HH
Q 037574 384 VK 385 (961)
Q Consensus 384 i~ 385 (961)
+.
T Consensus 220 An 221 (332)
T COG2255 220 AN 221 (332)
T ss_pred HH
Confidence 43
No 146
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.64 E-value=0.0012 Score=77.59 Aligned_cols=195 Identities=13% Similarity=0.188 Sum_probs=108.0
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVA 242 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 242 (961)
.+++|.+.....+..++... .-...+.++|+.|+||||+|+.+.+..--....+ ...+..-...
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~---------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c 79 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTG---------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPC 79 (576)
T ss_pred HHccCcHHHHHHHHHHHHcC---------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHH
Confidence 36899999999999888752 2235678999999999999999876311000000 0000000111
Q ss_pred HHHHHHh-------cCC-CCCcccHHHHHHHHHHH-hcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEec-C
Q 037574 243 KAILESL-------KGS-VSSQVEMETVLQYINEF-VQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTR-R 312 (961)
Q Consensus 243 ~~il~~l-------~~~-~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R 312 (961)
+.|...- .+. .....+..++...+... ..+++-++|+|++. ..+....+.+...+......+.+|++| .
T Consensus 80 ~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~-~Lt~~a~naLLk~LEepp~~~~fIl~t~~ 158 (576)
T PRK14965 80 VEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVH-MLSTNAFNALLKTLEEPPPHVKFIFATTE 158 (576)
T ss_pred HHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChh-hCCHHHHHHHHHHHHcCCCCeEEEEEeCC
Confidence 1110000 000 00011122222222111 13456689999996 455666777888887655566665544 4
Q ss_pred CCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCch-HHHHHH
Q 037574 313 GEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLP-FAVKIL 387 (961)
Q Consensus 313 ~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~P-Lai~~~ 387 (961)
...+...+. .+...+++.+++.++....+...+-..+... -.+.+..|++.++|.. .|+..+
T Consensus 159 ~~kl~~tI~---------SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i----~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 159 PHKVPITIL---------SRCQRFDFRRIPLQKIVDRLRYIADQEGISI----SDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred hhhhhHHHH---------HhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 333332221 1127889999999999888877653322211 1345677889999976 444444
No 147
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.64 E-value=0.0019 Score=75.35 Aligned_cols=193 Identities=14% Similarity=0.133 Sum_probs=107.8
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVA 242 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 242 (961)
.+++|.+...+.+..++... .-.+.+.++|+.|+||||+|+.+.+.---...-+ ..+++.-...
T Consensus 16 ~~viGq~~v~~~L~~~i~~~---------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C 79 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQG---------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEIC 79 (559)
T ss_pred HhccCcHHHHHHHHHHHHcC---------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHH
Confidence 46899999999999988763 2345677899999999999999876210000000 0011111111
Q ss_pred HHHHHHhcCC-----CCCcccHHH---HHHHHHH-HhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEec-C
Q 037574 243 KAILESLKGS-----VSSQVEMET---VLQYINE-FVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTR-R 312 (961)
Q Consensus 243 ~~il~~l~~~-----~~~~~~~~~---~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R 312 (961)
+.|......+ .......++ +...+.. -..+++-++|+|++. .-....+..+...+........+|++| .
T Consensus 80 ~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~-~Lt~~a~naLLKtLEepp~~~ifIlatt~ 158 (559)
T PRK05563 80 KAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVH-MLSTGAFNALLKTLEEPPAHVIFILATTE 158 (559)
T ss_pred HHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcc-cCCHHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 1111110000 000111222 2222111 113566788999996 445667777877776654455555444 3
Q ss_pred CCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHH
Q 037574 313 GEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVK 385 (961)
Q Consensus 313 ~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~ 385 (961)
...+...+. .+...+++.+++.++....+...+-..+... -.+.+..|++.++|.+..+.
T Consensus 159 ~~ki~~tI~---------SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i----~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 159 PHKIPATIL---------SRCQRFDFKRISVEDIVERLKYILDKEGIEY----EDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred hhhCcHHHH---------hHheEEecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHH
Confidence 333322211 1227788999999999988887764322211 13456778889998876443
No 148
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.64 E-value=0.00071 Score=69.13 Aligned_cols=186 Identities=15% Similarity=0.124 Sum_probs=114.5
Q ss_pred CCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeE-EEEeCCCCCHHH
Q 037574 162 PLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRI-WVSASCPRDEIR 240 (961)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~~s~~~~~~~ 240 (961)
-.+++|.+.....+...+.. ...+....+|++|.|||+-|..+++.---.+-|.+++ =.++|......
T Consensus 35 ~de~~gQe~vV~~L~~a~~~----------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis- 103 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLR----------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS- 103 (346)
T ss_pred HHhhcchHHHHHHHHHHHhh----------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-
Confidence 34688998888888888875 3568899999999999999998887322234555443 23455433221
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHh--cCCc-eEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCC-Ccc
Q 037574 241 VAKAILESLKGSVSSQVEMETVLQYINEFV--QGKK-VLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRG-EKN 316 (961)
Q Consensus 241 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l--~~kr-~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v 316 (961)
+.++=. .+.+.+.....+.. ..++ -++|||++. ....+.|..++..+.+...-++.++.+.. ..+
T Consensus 104 vvr~Ki----------k~fakl~~~~~~~~~~~~~~fKiiIlDEcd-smtsdaq~aLrr~mE~~s~~trFiLIcnylsri 172 (346)
T KOG0989|consen 104 VVREKI----------KNFAKLTVLLKRSDGYPCPPFKIIILDECD-SMTSDAQAALRRTMEDFSRTTRFILICNYLSRI 172 (346)
T ss_pred chhhhh----------cCHHHHhhccccccCCCCCcceEEEEechh-hhhHHHHHHHHHHHhccccceEEEEEcCChhhC
Confidence 111000 01111110000000 1123 478899997 66789999999999886666665444432 222
Q ss_pred cccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchH
Q 037574 317 GTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPF 382 (961)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PL 382 (961)
...+. ++...+..++|.+++...-++..+-.++...+ .+..+.|++.++|.--
T Consensus 173 i~pi~---------SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d----~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 173 IRPLV---------SRCQKFRFKKLKDEDIVDRLEKIASKEGVDID----DDALKLIAKISDGDLR 225 (346)
T ss_pred ChHHH---------hhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCcHH
Confidence 22221 12277899999999999999888765554332 3456778888988643
No 149
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.60 E-value=0.00058 Score=77.17 Aligned_cols=163 Identities=18% Similarity=0.190 Sum_probs=86.0
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCC
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGK 273 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 273 (961)
...+.|+|+.|+|||+|++.+++. +...-..+++++ ...+...+...+... . ...+++... .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~------~~~f~~~~~~~l~~~-----~----~~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVR------SELFTEHLVSAIRSG-----E----MQRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEee------HHHHHHHHHHHHhcc-----h----HHHHHHHcc-c
Confidence 356889999999999999999984 332223345554 334445555554321 1 122333333 3
Q ss_pred ceEEEeecccCCCChhh-HHHHHHhccC-CCCCcEEEEecCCC-cccccccccccccCCCCCcceeecCCCChHHHHHHH
Q 037574 274 KVLLVLDDVWWNACPRY-WEQLMYSLKS-GSEGSRILVTRRGE-KNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLF 350 (961)
Q Consensus 274 r~LlVlDdvw~~~~~~~-~~~l~~~l~~-~~~gs~ilvTtR~~-~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf 350 (961)
.-+|++||+..-..... -+.+...+.. ...|..||+||... .....+... ...+-.....+++.+++.++-.+++
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~r--L~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEER--LISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHH--HHhhhcCCeEEecCCCCHHHHHHHH
Confidence 45888999951111111 1223333321 11345788887542 211111000 0000001168899999999999999
Q ss_pred HHHHcCCCCCCCccchHHHHHHHHHhcCCc
Q 037574 351 RQIAFDGRSSDDREKFEPIGRLVVGKCKGL 380 (961)
Q Consensus 351 ~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~ 380 (961)
++.+-.....- -.++..-|++.+.|.
T Consensus 281 ~~k~~~~~~~l----~~evl~~la~~~~~d 306 (445)
T PRK12422 281 ERKAEALSIRI----EETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHcCCCC----CHHHHHHHHHhcCCC
Confidence 88764332211 134555566666544
No 150
>PRK06620 hypothetical protein; Validated
Probab=97.56 E-value=0.00065 Score=68.91 Aligned_cols=142 Identities=13% Similarity=0.053 Sum_probs=77.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCc
Q 037574 195 PVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKK 274 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 274 (961)
+.+.|+|++|+|||+|++.+++... . .++. ..+.. + +.. +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~~---------------------~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFFN---------------------E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhhc---------------------h-------hHH-hcC
Confidence 6799999999999999999877421 1 1221 00000 0 011 123
Q ss_pred eEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHH
Q 037574 275 VLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIA 354 (961)
Q Consensus 275 ~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 354 (961)
-+|++||+. .........+...+. ..|..||+|++.....-.+... ..+-....+++++++++++-..++++.+
T Consensus 87 d~lliDdi~-~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L---~SRl~~gl~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 87 NAFIIEDIE-NWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDL---SSRIKSVLSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred CEEEEeccc-cchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHH---HHHHhCCceEeeCCCCHHHHHHHHHHHH
Confidence 578899994 111111112222222 3466899998754431111000 0000111489999999999988888876
Q ss_pred cCCCCCCCccchHHHHHHHHHhcCCchHHH
Q 037574 355 FDGRSSDDREKFEPIGRLVVGKCKGLPFAV 384 (961)
Q Consensus 355 ~~~~~~~~~~~l~~~~~~I~~~c~G~PLai 384 (961)
....- .--+++..-|++.+.|.--.+
T Consensus 161 ~~~~l----~l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 161 SISSV----TISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred HHcCC----CCCHHHHHHHHHHccCCHHHH
Confidence 42211 122456777888877765433
No 151
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.54 E-value=0.00066 Score=83.53 Aligned_cols=161 Identities=20% Similarity=0.221 Sum_probs=87.2
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhc-----cC-ceeEEEEeCCCC
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKA-----NF-DKRIWVSASCPR 236 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-----~F-~~~~wv~~s~~~ 236 (961)
..++||+++++++++.|... ...-+.++|++|+|||++|+.++.. +.. .. +..+|.-
T Consensus 179 ~~~igr~~ei~~~~~~L~r~----------~~~n~lL~G~pGvGKTal~~~la~~--i~~~~vp~~l~~~~i~~l----- 241 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR----------TKNNPILIGEPGVGKTAIAEGLAQR--IVNRDVPDILEDKLVITL----- 241 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc----------ccCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEEe-----
Confidence 35899999999999999763 2334569999999999999999874 321 11 2344431
Q ss_pred CHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh-cCCceEEEeecccC------CC-ChhhHHHHHHhccCCCCCcEEE
Q 037574 237 DEIRVAKAILESLKGSVSSQVEMETVLQYINEFV-QGKKVLLVLDDVWW------NA-CPRYWEQLMYSLKSGSEGSRIL 308 (961)
Q Consensus 237 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~------~~-~~~~~~~l~~~l~~~~~gs~il 308 (961)
+...++ .+... ..+.++....+.+.+ ..++.+|++|++.. .. +.+.-..+...+..+ .-++|
T Consensus 242 ~~~~l~-------ag~~~-~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg--~l~~I 311 (821)
T CHL00095 242 DIGLLL-------AGTKY-RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG--ELQCI 311 (821)
T ss_pred eHHHHh-------ccCCC-ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC--CcEEE
Confidence 221111 11111 122333333333333 35689999999940 00 111112233333322 23455
Q ss_pred EecCCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHH
Q 037574 309 VTRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQI 353 (961)
Q Consensus 309 vTtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 353 (961)
.+|...+........+ .-...+..+.+...+.++..+++...
T Consensus 312 gaTt~~ey~~~ie~D~---aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 312 GATTLDEYRKHIEKDP---ALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred EeCCHHHHHHHHhcCH---HHHhcceEEecCCCCHHHHHHHHHHH
Confidence 5555443322111110 00123377889999999998888653
No 152
>PRK10536 hypothetical protein; Provisional
Probab=97.54 E-value=0.001 Score=67.75 Aligned_cols=132 Identities=17% Similarity=0.268 Sum_probs=75.7
Q ss_pred CCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEE----eCC---
Q 037574 162 PLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVS----ASC--- 234 (961)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~----~s~--- 234 (961)
...+.++......+..++.. ...+.++|+.|+|||+||..+..+.-..+.|+.++-+. +.+
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~------------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LG 121 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIES------------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLG 121 (262)
T ss_pred CccccCCCHHHHHHHHHHhc------------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhC
Confidence 34567889999999998864 24899999999999999999887532234454433321 111
Q ss_pred --CCCHHH----HHHHHHHHhcCCCCCcccHHHHHHHH-----------HHHhcCCce---EEEeecccCCCChhhHHHH
Q 037574 235 --PRDEIR----VAKAILESLKGSVSSQVEMETVLQYI-----------NEFVQGKKV---LLVLDDVWWNACPRYWEQL 294 (961)
Q Consensus 235 --~~~~~~----~~~~il~~l~~~~~~~~~~~~~~~~l-----------~~~l~~kr~---LlVlDdvw~~~~~~~~~~l 294 (961)
+-+..+ .++.+...+..-. ..+.+...+ ..+++|+.+ +||+|++. +-+. .++
T Consensus 122 fLPG~~~eK~~p~~~pi~D~L~~~~----~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaq-n~~~---~~~ 193 (262)
T PRK10536 122 FLPGDIAEKFAPYFRPVYDVLVRRL----GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQ-NVTA---AQM 193 (262)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHh----ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechh-cCCH---HHH
Confidence 112221 1222222221100 001111111 125566655 99999996 4343 445
Q ss_pred HHhccCCCCCcEEEEecCC
Q 037574 295 MYSLKSGSEGSRILVTRRG 313 (961)
Q Consensus 295 ~~~l~~~~~gs~ilvTtR~ 313 (961)
...+...+.+|++|+|--.
T Consensus 194 k~~ltR~g~~sk~v~~GD~ 212 (262)
T PRK10536 194 KMFLTRLGENVTVIVNGDI 212 (262)
T ss_pred HHHHhhcCCCCEEEEeCCh
Confidence 5555666789999998643
No 153
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.53 E-value=0.00023 Score=66.53 Aligned_cols=96 Identities=22% Similarity=0.260 Sum_probs=52.0
Q ss_pred EEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcC-Cce
Q 037574 197 IWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQG-KKV 275 (961)
Q Consensus 197 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~ 275 (961)
|.|+|++|+||||+|+.+++. ...+ .+.++.+... ..........+...+.+.-.. ++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~--l~~~---~~~i~~~~~~---------------~~~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY--LGFP---FIEIDGSELI---------------SSYAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH--TTSE---EEEEETTHHH---------------TSSTTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhh--cccc---cccccccccc---------------cccccccccccccccccccccccce
Confidence 579999999999999999994 3222 2444432111 001112223333333333233 389
Q ss_pred EEEeecccCCCChhh-----------HHHHHHhccCCC---CCcEEEEecCC
Q 037574 276 LLVLDDVWWNACPRY-----------WEQLMYSLKSGS---EGSRILVTRRG 313 (961)
Q Consensus 276 LlVlDdvw~~~~~~~-----------~~~l~~~l~~~~---~gs~ilvTtR~ 313 (961)
+|++||+. .-.... ...+...+.... .+..||.||..
T Consensus 61 vl~iDe~d-~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 61 VLFIDEID-KLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp EEEEETGG-GTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred eeeeccch-hcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 99999995 211121 344555554432 23566667665
No 154
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.51 E-value=0.00069 Score=64.01 Aligned_cols=85 Identities=22% Similarity=0.239 Sum_probs=45.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCC-
Q 037574 195 PVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGK- 273 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k- 273 (961)
..+.|+|++|+||||+|+.++.. .......++++..+........... ...................+.+.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 57899999999999999999984 3222233555554443322221111 111111111122222233444444433
Q ss_pred ceEEEeeccc
Q 037574 274 KVLLVLDDVW 283 (961)
Q Consensus 274 r~LlVlDdvw 283 (961)
..+|++|+++
T Consensus 79 ~~viiiDei~ 88 (148)
T smart00382 79 PDVLILDEIT 88 (148)
T ss_pred CCEEEEECCc
Confidence 4999999996
No 155
>PRK08116 hypothetical protein; Validated
Probab=97.50 E-value=0.00047 Score=72.55 Aligned_cols=102 Identities=23% Similarity=0.257 Sum_probs=59.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCc
Q 037574 195 PVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKK 274 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 274 (961)
..+.++|..|+|||+||..+++. ...+-..+++++ ..+++..+........ ..+..+ +.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~~~----~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVN------FPQLLNRIKSTYKSSG--KEDENE----IIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHhccc--cccHHH----HHHHhcCCC
Confidence 45889999999999999999994 333334456665 3445555555443221 111222 233344333
Q ss_pred eEEEeecccCCCChhhHHH--HHHhccC-CCCCcEEEEecC
Q 037574 275 VLLVLDDVWWNACPRYWEQ--LMYSLKS-GSEGSRILVTRR 312 (961)
Q Consensus 275 ~LlVlDdvw~~~~~~~~~~--l~~~l~~-~~~gs~ilvTtR 312 (961)
||||||+. .+....|.. +...+.. -..|..+||||.
T Consensus 181 -lLviDDlg-~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN 219 (268)
T PRK08116 181 -LLILDDLG-AERDTEWAREKVYNIIDSRYRKGLPTIVTTN 219 (268)
T ss_pred -EEEEeccc-CCCCCHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 89999994 233334443 3333332 234567999986
No 156
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0035 Score=73.67 Aligned_cols=128 Identities=20% Similarity=0.286 Sum_probs=82.2
Q ss_pred ccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHH
Q 037574 164 EFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAK 243 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 243 (961)
.++|.+..+..+.+.+.....+-. .+.....+...+|+.|+|||-||+.+... .-+.=+..+-++.|......
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~-dp~rPigsFlF~GPTGVGKTELAkaLA~~--Lfg~e~aliR~DMSEy~EkH---- 564 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLG-DPNRPIGSFLFLGPTGVGKTELAKALAEA--LFGDEQALIRIDMSEYMEKH---- 564 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCC-CCCCCceEEEeeCCCcccHHHHHHHHHHH--hcCCCccceeechHHHHHHH----
Confidence 588999999999888875432210 11134568888999999999999999772 21111445556655433222
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHhcCCce-EEEeecccCCCChhhHHHHHHhccCC
Q 037574 244 AILESLKGSVSSQVEMETVLQYINEFVQGKKV-LLVLDDVWWNACPRYWEQLMYSLKSG 301 (961)
Q Consensus 244 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdvw~~~~~~~~~~l~~~l~~~ 301 (961)
-+..|-+.++.-...++ ...|.+.++.++| +|.||++- ..+++..+.+.+.|.++
T Consensus 565 -sVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIE-KAHpdV~nilLQVlDdG 620 (786)
T COG0542 565 -SVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIE-KAHPDVFNLLLQVLDDG 620 (786)
T ss_pred -HHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhh-hcCHHHHHHHHHHhcCC
Confidence 22334344433333333 4456667777888 77789995 67888888888888765
No 157
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.50 E-value=0.0011 Score=77.38 Aligned_cols=215 Identities=10% Similarity=0.144 Sum_probs=105.1
Q ss_pred CCCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeC---CCCC
Q 037574 161 DPLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSAS---CPRD 237 (961)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s---~~~~ 237 (961)
.-.+++|.+..++++..++....-.. ....++.|+|++|+||||+++.++... .++..-|++.. ...+
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~~~-----~~~~illL~GP~GsGKTTl~~~la~~l----~~~~~Ew~npv~~~~~~~ 152 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVLEN-----APKRILLITGPSGCGKSTTIKILSKEL----GIQVQEWSNPTLPDFQKN 152 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhccccc-----CCCcEEEEECCCCCCHHHHHHHHHHHh----hhHHHHHhhhhhhccccc
Confidence 34568999999999999987643211 234689999999999999999998742 23334443211 0001
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH-------hcCCceEEEeecccC--CCChhhHHHHHH-hccCCCCCcEE
Q 037574 238 EIRVAKAILESLKGSVSSQVEMETVLQYINEF-------VQGKKVLLVLDDVWW--NACPRYWEQLMY-SLKSGSEGSRI 307 (961)
Q Consensus 238 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-------l~~kr~LlVlDdvw~--~~~~~~~~~l~~-~l~~~~~gs~i 307 (961)
...+...+..++.................... ..+++.+|++|++-. .........+.. .+...+.-.-|
T Consensus 153 ~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI 232 (637)
T TIGR00602 153 DHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLV 232 (637)
T ss_pred ccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEE
Confidence 11111222222221111112222222222211 135678999999931 012223444443 23222323345
Q ss_pred EEecCCCccc-----ccccccc-c--ccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCcc---chHHHHHHHHHh
Q 037574 308 LVTRRGEKNG-----TNMTEIG-L--GEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDRE---KFEPIGRLVVGK 376 (961)
Q Consensus 308 lvTtR~~~v~-----~~~~~~~-~--~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~---~l~~~~~~I~~~ 376 (961)
+|||-+..-. ....... + ..........+.+.|++..+-.+.+.+.+-......... .-.+....|+..
T Consensus 233 ~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~ 312 (637)
T TIGR00602 233 FIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQG 312 (637)
T ss_pred EEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHh
Confidence 6666432200 0010000 0 000011225689999999997777777653321111001 012455667777
Q ss_pred cCCchHHH
Q 037574 377 CKGLPFAV 384 (961)
Q Consensus 377 c~G~PLai 384 (961)
++|---.+
T Consensus 313 s~GDiRsA 320 (637)
T TIGR00602 313 CSGDIRSA 320 (637)
T ss_pred CCChHHHH
Confidence 77765433
No 158
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.49 E-value=0.0045 Score=74.97 Aligned_cols=167 Identities=17% Similarity=0.197 Sum_probs=89.9
Q ss_pred CCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHH
Q 037574 162 PLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRV 241 (961)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 241 (961)
+.+++|.++.+++|.++|....... .....++.++|++|+||||+|+.++. .....|- -++.+...+...+
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~----~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~~---~i~~~~~~d~~~i 391 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVN----KIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKYV---RMALGGVRDEAEI 391 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcc----cCCCceEEEECCCCCCHHHHHHHHHH--HhCCCEE---EEEcCCCCCHHHh
Confidence 4568999999999998887421100 02446899999999999999999987 3333332 2334443333322
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChh----hHHHHHHhccCC--------------C-
Q 037574 242 AKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPR----YWEQLMYSLKSG--------------S- 302 (961)
Q Consensus 242 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~----~~~~l~~~l~~~--------------~- 302 (961)
...--...+ .....+.+.+.+. ....-+++||.+. ....+ ....+...+... .
T Consensus 392 ~g~~~~~~g------~~~G~~~~~l~~~-~~~~~villDEid-k~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dl 463 (784)
T PRK10787 392 RGHRRTYIG------SMPGKLIQKMAKV-GVKNPLFLLDEID-KMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDL 463 (784)
T ss_pred ccchhccCC------CCCcHHHHHHHhc-CCCCCEEEEEChh-hcccccCCCHHHHHHHHhccccEEEEecccccccccC
Confidence 111100011 0111233333332 2234578999995 21111 134454444321 1
Q ss_pred CCcEEEEecCCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHH
Q 037574 303 EGSRILVTRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIA 354 (961)
Q Consensus 303 ~gs~ilvTtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 354 (961)
...-+|.|+.+..+...+ -.+...+++.++++++-.++.+++.
T Consensus 464 s~v~~i~TaN~~~i~~aL---------l~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 464 SDVMFVATSNSMNIPAPL---------LDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred CceEEEEcCCCCCCCHHH---------hcceeeeecCCCCHHHHHHHHHHhh
Confidence 222334444333221111 1233789999999999888887765
No 159
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.48 E-value=0.0029 Score=67.82 Aligned_cols=96 Identities=11% Similarity=0.088 Sum_probs=66.2
Q ss_pred CCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCC-ccccc-ccccccccCCCCCcceeecCCCChHHHHHH
Q 037574 272 GKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGE-KNGTN-MTEIGLGEKDGTNMTEIGLGELSAKECRSL 349 (961)
Q Consensus 272 ~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~-~~~~~~~~~~~~~~~~~~l~~L~~~~~~~L 349 (961)
+++-++|+|++. ..+...-..+...+..-..++.+|++|.+. .+... .+.. ..+.+.+++.+++.+.
T Consensus 112 g~~kV~iI~~ae-~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRC----------q~i~~~~~~~~~~~~~ 180 (319)
T PRK08769 112 GIAQVVIVDPAD-AINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRC----------QRLEFKLPPAHEALAW 180 (319)
T ss_pred CCcEEEEeccHh-hhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhh----------eEeeCCCcCHHHHHHH
Confidence 566799999995 445566667777887766777777777644 33322 2222 8899999999999988
Q ss_pred HHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHHH
Q 037574 350 FRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKILG 388 (961)
Q Consensus 350 f~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~~ 388 (961)
+.... . . ...++.++..++|.|+.+..+.
T Consensus 181 L~~~~----~-~-----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 181 LLAQG----V-S-----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred HHHcC----C-C-----hHHHHHHHHHcCCCHHHHHHHh
Confidence 87531 1 1 1125678999999999776554
No 160
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.45 E-value=0.0026 Score=72.34 Aligned_cols=174 Identities=16% Similarity=0.185 Sum_probs=89.4
Q ss_pred CccccchHHHHHHHHHHhCCCCCCc---CCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhcc-----CceeEEEEeCC
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEE---SGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKAN-----FDKRIWVSASC 234 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~~s~ 234 (961)
.++.|.+..++++.+.+.-.-...+ .-+-...+-+.++|++|+|||++|+.+++. .... +....|+.+..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEeccc
Confidence 4578899999988887642110000 000023456899999999999999999984 3222 12344555432
Q ss_pred CCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh-cCCceEEEeecccCCC----C--hhh-----HHHHHHhccCC-
Q 037574 235 PRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFV-QGKKVLLVLDDVWWNA----C--PRY-----WEQLMYSLKSG- 301 (961)
Q Consensus 235 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~~----~--~~~-----~~~l~~~l~~~- 301 (961)
. . ++....+. .......+....++.. .+++++|+||+++.-. . ... ...+...+...
T Consensus 260 ~----e----Ll~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 260 P----E----LLNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE 329 (512)
T ss_pred h----h----hcccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc
Confidence 1 1 11111000 0001112222222221 3578999999995100 0 011 12333333321
Q ss_pred -CCCcEEEEecCCCcccccccccccccCCCCC-cceeecCCCChHHHHHHHHHHH
Q 037574 302 -SEGSRILVTRRGEKNGTNMTEIGLGEKDGTN-MTEIGLGELSAKECRSLFRQIA 354 (961)
Q Consensus 302 -~~gs~ilvTtR~~~v~~~~~~~~~~~~~~~~-~~~~~l~~L~~~~~~~Lf~~~~ 354 (961)
..+..||.||...+.....- .++.+ ...+.++..+.++..++|+.+.
T Consensus 330 ~~~~ViVI~ATN~~d~LDpAL------lRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 330 SLDNVIVIGASNREDMIDPAI------LRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cCCceEEEeccCChhhCCHhh------cCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 13445566665443222110 01111 1568999999999999999875
No 161
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.44 E-value=0.00015 Score=52.28 Aligned_cols=41 Identities=37% Similarity=0.567 Sum_probs=34.1
Q ss_pred CcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcccCCc
Q 037574 599 TCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKKLPK 646 (961)
Q Consensus 599 ~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~ 646 (961)
++|++|++++|. +..+|..+++|++|++|++++|. ++.+|.
T Consensus 1 ~~L~~L~l~~N~------i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQ------ITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-------SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEccCCC------CcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 478999999994 88999889999999999999998 877654
No 162
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0038 Score=71.27 Aligned_cols=168 Identities=17% Similarity=0.209 Sum_probs=96.7
Q ss_pred CCCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHH
Q 037574 161 DPLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIR 240 (961)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 240 (961)
-+.+.+|-++-+++|++.|.-..-.. .-.-+++++||++|+|||+|++.+++ ...+.| +-+++....|..+
T Consensus 321 Ld~dHYGLekVKeRIlEyLAV~~l~~----~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAE 391 (782)
T COG0466 321 LDKDHYGLEKVKERILEYLAVQKLTK----KLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAE 391 (782)
T ss_pred hcccccCchhHHHHHHHHHHHHHHhc----cCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHH
Confidence 35578899999999999886422110 03448999999999999999999998 566666 2345555555443
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCC---CChhhHHHHHHhccCCCC-------------C
Q 037574 241 VAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWN---ACPRYWEQLMYSLKSGSE-------------G 304 (961)
Q Consensus 241 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~---~~~~~~~~l~~~l~~~~~-------------g 304 (961)
+-.. ....-..-...+++.+++ .+.+.-|++||.++.- ...+.-..+...|....+ =
T Consensus 392 IRGH------RRTYIGamPGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDL 464 (782)
T COG0466 392 IRGH------RRTYIGAMPGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDL 464 (782)
T ss_pred hccc------cccccccCChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccch
Confidence 3100 000111112233444433 3456779999998410 011222333333332111 1
Q ss_pred cEE-EEecCCC-c--ccccccccccccCCCCCcceeecCCCChHHHHHHHHHHH
Q 037574 305 SRI-LVTRRGE-K--NGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIA 354 (961)
Q Consensus 305 s~i-lvTtR~~-~--v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 354 (961)
|.| .|||-+. + .+..+... .++++.+-+++|-.+.-+++.
T Consensus 465 S~VmFiaTANsl~tIP~PLlDRM----------EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLDRM----------EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred hheEEEeecCccccCChHHhcce----------eeeeecCCChHHHHHHHHHhc
Confidence 444 4455332 2 12223333 899999999999888777765
No 163
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.39 E-value=0.0018 Score=77.75 Aligned_cols=163 Identities=18% Similarity=0.204 Sum_probs=87.8
Q ss_pred ccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhcc-----CceeEEEEeCCCCCH
Q 037574 164 EFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKAN-----FDKRIWVSASCPRDE 238 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~~s~~~~~ 238 (961)
.++||+.+++++++.|.... ..-+.++|++|+|||++|+.+++.. +... .++.+|.. +.
T Consensus 187 ~liGR~~ei~~~i~iL~r~~----------~~n~LLvGppGvGKT~lae~la~~i-~~~~vP~~l~~~~~~~l-----~~ 250 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRR----------KNNPLLVGESGVGKTAIAEGLAWRI-VQGDVPEVMADCTIYSL-----DI 250 (758)
T ss_pred cCcCCCHHHHHHHHHHhccC----------CCCeEEECCCCCCHHHHHHHHHHHH-HhcCCCchhcCCeEEec-----cH
Confidence 58999999999999988632 2334689999999999999998731 1111 13444421 11
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh-cCCceEEEeecccCC-------CChhhHHHHHHhccCCCCCcEEEEe
Q 037574 239 IRVAKAILESLKGSVSSQVEMETVLQYINEFV-QGKKVLLVLDDVWWN-------ACPRYWEQLMYSLKSGSEGSRILVT 310 (961)
Q Consensus 239 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~-------~~~~~~~~l~~~l~~~~~gs~ilvT 310 (961)
..+ + .+.. ...+.+.....+.+.+ +..+.+|++|++..- ........+..++...+ .-+||-+
T Consensus 251 ~~l----l---aG~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgA 321 (758)
T PRK11034 251 GSL----L---AGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGS 321 (758)
T ss_pred HHH----h---cccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEec
Confidence 111 1 1110 1112233333333333 346789999999410 01122222232222222 2344545
Q ss_pred cCCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHH
Q 037574 311 RRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIA 354 (961)
Q Consensus 311 tR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 354 (961)
|...+....+...+ .-..++..+.+++.+.++...+++...
T Consensus 322 Tt~~E~~~~~~~D~---AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 322 TTYQEFSNIFEKDR---ALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred CChHHHHHHhhccH---HHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 54433322211110 001234789999999999999998653
No 164
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.38 E-value=0.0024 Score=71.33 Aligned_cols=153 Identities=20% Similarity=0.188 Sum_probs=88.8
Q ss_pred EEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCce
Q 037574 196 VIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKV 275 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 275 (961)
++.|+|+-++||||+++.+... .... .+++...+......-+.+.+ ..+.+.-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d~~-----------------~~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLDLL-----------------RAYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHHHH-----------------HHHHHhhccCCc
Confidence 9999999999999999777663 2111 55555332211111111111 111111122788
Q ss_pred EEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHc
Q 037574 276 LLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAF 355 (961)
Q Consensus 276 LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 355 (961)
.++||.|. ....|+.....+.+.++. +|++|+-+..+...-... .-+.+...+.+-|||-.|...+-...+
T Consensus 97 yifLDEIq---~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~----~L~GR~~~~~l~PlSF~Efl~~~~~~~- 167 (398)
T COG1373 97 YIFLDEIQ---NVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISE----SLAGRGKDLELYPLSFREFLKLKGEEI- 167 (398)
T ss_pred eEEEeccc---CchhHHHHHHHHHccccc-eEEEECCchhhhccchhh----hcCCCceeEEECCCCHHHHHhhccccc-
Confidence 99999996 566788877777776655 899988776644332221 112335889999999999876532000
Q ss_pred CCCCCCCccchHHHHHHHHHhcCCchHHHHH
Q 037574 356 DGRSSDDREKFEPIGRLVVGKCKGLPFAVKI 386 (961)
Q Consensus 356 ~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~ 386 (961)
. ...... .-+=.-..||.|-++..
T Consensus 168 -----~-~~~~~~-~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 168 -----E-PSKLEL-LFEKYLETGGFPESVKA 191 (398)
T ss_pred -----c-hhHHHH-HHHHHHHhCCCcHHHhC
Confidence 0 001111 22223467899987764
No 165
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.0057 Score=69.56 Aligned_cols=172 Identities=16% Similarity=0.133 Sum_probs=95.9
Q ss_pred CCCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHH
Q 037574 161 DPLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIR 240 (961)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 240 (961)
-+.+.+|.++-+++|.+++.-..-. +..+-++++.+|++|+|||++|+.+++ ...+.| +-+++..-.|..+
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLr----gs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAe 479 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLR----GSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAE 479 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhc----ccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccHHh
Confidence 3556899999999999987643211 114568999999999999999999998 555555 2256666656554
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCC---CChhhHHHHHHhccCCC-------------CC
Q 037574 241 VAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWN---ACPRYWEQLMYSLKSGS-------------EG 304 (961)
Q Consensus 241 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~---~~~~~~~~l~~~l~~~~-------------~g 304 (961)
|-..= ...-..-...+++.+++. +...-|+.+|.|..- ...+.-..+...|.... -=
T Consensus 480 IkGHR------RTYVGAMPGkiIq~LK~v-~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DL 552 (906)
T KOG2004|consen 480 IKGHR------RTYVGAMPGKIIQCLKKV-KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDL 552 (906)
T ss_pred hcccc------eeeeccCChHHHHHHHhh-CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccch
Confidence 31100 001111123344444442 445668888988410 11122233433333211 13
Q ss_pred cEEEEecCCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHH
Q 037574 305 SRILVTRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIA 354 (961)
Q Consensus 305 s~ilvTtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 354 (961)
|+|+....-..+...-.. - ..+...|++.+-..+|-.++-.++.
T Consensus 553 SkVLFicTAN~idtIP~p----L--lDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 553 SKVLFICTANVIDTIPPP----L--LDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred hheEEEEeccccccCChh----h--hhhhheeeccCccHHHHHHHHHHhh
Confidence 666543321211111110 0 1122789999998888877766654
No 166
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.37 E-value=0.0084 Score=64.45 Aligned_cols=95 Identities=7% Similarity=-0.010 Sum_probs=66.8
Q ss_pred cCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCC-ccccc-ccccccccCCCCCcceeecCCCChHHHHH
Q 037574 271 QGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGE-KNGTN-MTEIGLGEKDGTNMTEIGLGELSAKECRS 348 (961)
Q Consensus 271 ~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~-~~~~~~~~~~~~~~~~~~l~~L~~~~~~~ 348 (961)
.+++-++|+|++. .........+...+.....++.+|++|.+. .+... .+.. ..+.+.++++++..+
T Consensus 105 ~g~~KV~iI~~a~-~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC----------~~~~~~~~~~~~~~~ 173 (325)
T PRK06871 105 QGGNKVVYIQGAE-RLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRC----------QTWLIHPPEEQQALD 173 (325)
T ss_pred cCCceEEEEechh-hhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhc----------eEEeCCCCCHHHHHH
Confidence 3666788899996 556677888888888877777877777654 33322 2223 889999999999999
Q ss_pred HHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHH
Q 037574 349 LFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVK 385 (961)
Q Consensus 349 Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~ 385 (961)
.+..... . . ...+...+..++|.|+.+.
T Consensus 174 ~L~~~~~---~-~-----~~~~~~~~~l~~g~p~~A~ 201 (325)
T PRK06871 174 WLQAQSS---A-E-----ISEILTALRINYGRPLLAL 201 (325)
T ss_pred HHHHHhc---c-C-----hHHHHHHHHHcCCCHHHHH
Confidence 8887541 1 1 1124566788999997443
No 167
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.36 E-value=0.00014 Score=86.31 Aligned_cols=132 Identities=23% Similarity=0.216 Sum_probs=91.5
Q ss_pred CCCccEEEEEeccCCCC-Cc-ccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhh
Q 037574 547 HEKFPHLMITFESDQGA-FP-NSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQI 624 (961)
Q Consensus 547 ~~~~r~l~l~~~~~~~~-~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i 624 (961)
..++++|++.+...... -| ..-..+|.|++|.+.+..... ........+|++|+.||++++. +..+ .+|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~--~dF~~lc~sFpNL~sLDIS~Tn------I~nl-~GI 191 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN--DDFSQLCASFPNLRSLDISGTN------ISNL-SGI 191 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc--hhHHHHhhccCccceeecCCCC------ccCc-HHH
Confidence 45678888877543211 11 223558999999998865211 2244556899999999999983 6666 779
Q ss_pred cCCCCcceEeccCCCCcccCC--cchhccCCCcEeecCCCCCCccccc-------ccccCCCCcEEEeCCcccc
Q 037574 625 KRLIHLRYLNLSKNNKIKKLP--KTLCELYNLQTLELSWCSNLRNLPQ-------GMGKLINLRHVVNVGTPLS 689 (961)
Q Consensus 625 ~~l~~Lr~L~L~~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lP~-------~i~~L~~L~~L~l~~~~l~ 689 (961)
++|++|+.|.+++-. +..-+ ..+.+|++|++||+|...... .|. .-..|++||.|+.+++.+.
T Consensus 192 S~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 192 SRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccccHHHHhccCCC-CCchhhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcchh
Confidence 999999999998766 55433 357789999999999765322 221 1123899999999876554
No 168
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.35 E-value=5.3e-05 Score=86.03 Aligned_cols=89 Identities=28% Similarity=0.398 Sum_probs=57.6
Q ss_pred hccCCcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCccccccccc
Q 037574 595 FDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQGMGK 674 (961)
Q Consensus 595 ~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~ 674 (961)
+..++.|..|++.+| . +..+...+..+++|++|+|++|. |+.+.. +..|..|+.|++++|. +..++ ++..
T Consensus 91 l~~~~~l~~l~l~~n-----~-i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L~l~~N~-i~~~~-~~~~ 160 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDN-----K-IEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKELNLSGNL-ISDIS-GLES 160 (414)
T ss_pred cccccceeeeecccc-----c-hhhcccchhhhhcchheeccccc-cccccc-hhhccchhhheeccCc-chhcc-CCcc
Confidence 456677777777776 3 55555546667777777777776 666643 6666667777777766 55553 4455
Q ss_pred CCCCcEEEeCCcccccCCc
Q 037574 675 LINLRHVVNVGTPLSYMPK 693 (961)
Q Consensus 675 L~~L~~L~l~~~~l~~~p~ 693 (961)
+.+|+.+++++|.+..+..
T Consensus 161 l~~L~~l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 161 LKSLKLLDLSYNRIVDIEN 179 (414)
T ss_pred chhhhcccCCcchhhhhhh
Confidence 6777777777666655543
No 169
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.35 E-value=0.0047 Score=67.37 Aligned_cols=163 Identities=12% Similarity=0.101 Sum_probs=90.1
Q ss_pred ccc-chHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHH
Q 037574 165 FHG-RNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAK 243 (961)
Q Consensus 165 ~vG-r~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 243 (961)
++| -+..++.+...+... .-.....++|+.|+||||+|+.+.+..--....... .+..-..-+
T Consensus 7 i~~~q~~~~~~L~~~~~~~---------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~ 70 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKN---------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCK 70 (329)
T ss_pred HHhhHHHHHHHHHHHHHcC---------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHH
Confidence 556 666677777777642 235677999999999999999886521000000000 000000000
Q ss_pred HHHHHhcC------CCCCcccHHHHHHHHHHH----hcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCC
Q 037574 244 AILESLKG------SVSSQVEMETVLQYINEF----VQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRG 313 (961)
Q Consensus 244 ~il~~l~~------~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 313 (961)
.+...-.. ........+++.+.+... ..+.+-++|+|++. ..+...-..+...+......+.+|++|.+
T Consensus 71 ~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~-~~~~~a~NaLLK~LEEPp~~~~~Il~t~~ 149 (329)
T PRK08058 71 RIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHAD-KMTASAANSLLKFLEEPSGGTTAILLTEN 149 (329)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHh-hhCHHHHHHHHHHhcCCCCCceEEEEeCC
Confidence 00000000 000112233333222221 23556689999995 55566777788888877777777777765
Q ss_pred Cc-ccccccccccccCCCCCcceeecCCCChHHHHHHHHHH
Q 037574 314 EK-NGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQI 353 (961)
Q Consensus 314 ~~-v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 353 (961)
.. +...+. ++...+++.+++.++..+.+.+.
T Consensus 150 ~~~ll~TIr---------SRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 150 KHQILPTIL---------SRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred hHhCcHHHH---------hhceeeeCCCCCHHHHHHHHHHc
Confidence 43 322221 22388999999999998888653
No 170
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.34 E-value=0.0026 Score=78.64 Aligned_cols=159 Identities=18% Similarity=0.232 Sum_probs=84.3
Q ss_pred ccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhcc------CceeEEEEeCCCCC
Q 037574 164 EFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKAN------FDKRIWVSASCPRD 237 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~wv~~s~~~~ 237 (961)
.++||+.+++++++.|... ...-+.++|++|+|||++|+.+.+. +... ....+|.- +
T Consensus 174 ~~igr~~ei~~~~~~l~r~----------~~~n~lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~l-----~ 236 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRR----------TKNNPVLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLAL-----D 236 (852)
T ss_pred cCCCcHHHHHHHHHHHhcC----------CCCceEEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEEe-----e
Confidence 5899999999999999763 2344568999999999999998873 3221 12333321 1
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh-c-CCceEEEeecccCCCC--------hhhHHHHHHhccCCCCC-cE
Q 037574 238 EIRVAKAILESLKGSVSSQVEMETVLQYINEFV-Q-GKKVLLVLDDVWWNAC--------PRYWEQLMYSLKSGSEG-SR 306 (961)
Q Consensus 238 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~-~kr~LlVlDdvw~~~~--------~~~~~~l~~~l~~~~~g-s~ 306 (961)
+..+ +. +.. ...+.+.....+.+.+ + +++.+|++|++. .-. .+.-+.+...+ ..| -.
T Consensus 237 ~~~l----~a---~~~-~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih-~l~~~g~~~~~~d~~~~Lk~~l---~~g~i~ 304 (852)
T TIGR03346 237 MGAL----IA---GAK-YRGEFEERLKAVLNEVTKSEGQIILFIDELH-TLVGAGKAEGAMDAGNMLKPAL---ARGELH 304 (852)
T ss_pred HHHH----hh---cch-hhhhHHHHHHHHHHHHHhcCCCeEEEeccHH-HhhcCCCCcchhHHHHHhchhh---hcCceE
Confidence 1111 10 000 0112222222333333 2 468999999995 110 01111222222 223 34
Q ss_pred EEEecCCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHH
Q 037574 307 ILVTRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIA 354 (961)
Q Consensus 307 ilvTtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 354 (961)
+|-+|........+... ..-..++..+.+...+.++...++....
T Consensus 305 ~IgaTt~~e~r~~~~~d---~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 305 CIGATTLDEYRKYIEKD---AALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred EEEeCcHHHHHHHhhcC---HHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 44444433321111110 0001233678899999999999887653
No 171
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.29 E-value=0.003 Score=61.11 Aligned_cols=122 Identities=17% Similarity=0.201 Sum_probs=73.1
Q ss_pred cchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCCh---hhh---------------ccCceeE
Q 037574 167 GRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDS---DVK---------------ANFDKRI 228 (961)
Q Consensus 167 Gr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~---~~~---------------~~F~~~~ 228 (961)
|-+...+.+...+... .-...+.++|+.|+||+|+|..+.+.- ... ....-..
T Consensus 1 gq~~~~~~L~~~~~~~---------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~ 71 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG---------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFI 71 (162)
T ss_dssp S-HHHHHHHHHHHHCT---------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEE
T ss_pred CcHHHHHHHHHHHHcC---------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceE
Confidence 4556667777777653 235678999999999999999886621 000 1122333
Q ss_pred EEEeCCC---CCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCc
Q 037574 229 WVSASCP---RDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGS 305 (961)
Q Consensus 229 wv~~s~~---~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs 305 (961)
|+.-... ...+.+ +++...+.... ..+++=++|+||+. ....+....+...+......+
T Consensus 72 ~~~~~~~~~~i~i~~i-r~i~~~~~~~~----------------~~~~~KviiI~~ad-~l~~~a~NaLLK~LEepp~~~ 133 (162)
T PF13177_consen 72 IIKPDKKKKSIKIDQI-REIIEFLSLSP----------------SEGKYKVIIIDEAD-KLTEEAQNALLKTLEEPPENT 133 (162)
T ss_dssp EEETTTSSSSBSHHHH-HHHHHHCTSS-----------------TTSSSEEEEEETGG-GS-HHHHHHHHHHHHSTTTTE
T ss_pred EEecccccchhhHHHH-HHHHHHHHHHH----------------hcCCceEEEeehHh-hhhHHHHHHHHHHhcCCCCCE
Confidence 4432221 222221 13333322211 13456689999996 667788889999998888889
Q ss_pred EEEEecCCCc
Q 037574 306 RILVTRRGEK 315 (961)
Q Consensus 306 ~ilvTtR~~~ 315 (961)
.+|++|.+..
T Consensus 134 ~fiL~t~~~~ 143 (162)
T PF13177_consen 134 YFILITNNPS 143 (162)
T ss_dssp EEEEEES-GG
T ss_pred EEEEEECChH
Confidence 9988887665
No 172
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.28 E-value=0.0011 Score=67.24 Aligned_cols=37 Identities=27% Similarity=0.453 Sum_probs=30.3
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEe
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSA 232 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 232 (961)
.-.++|+|..|+|||||+..+.. .....|.++++++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 34688999999999999999987 46678877777653
No 173
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.28 E-value=0.00015 Score=85.92 Aligned_cols=110 Identities=23% Similarity=0.219 Sum_probs=82.7
Q ss_pred CCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcccCCcchhc
Q 037574 571 QKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKKLPKTLCE 650 (961)
Q Consensus 571 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~ 650 (961)
-.+|+.|++.+...+.. .++...-..||.|+.|.+++-... ...+..-..++++|+.||+|+++ ++.+ ..|++
T Consensus 121 r~nL~~LdI~G~~~~s~-~W~~kig~~LPsL~sL~i~~~~~~----~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~ 193 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSN-GWPKKIGTMLPSLRSLVISGRQFD----NDDFSQLCASFPNLRSLDISGTN-ISNL-SGISR 193 (699)
T ss_pred HHhhhhcCccccchhhc-cHHHHHhhhCcccceEEecCceec----chhHHHHhhccCccceeecCCCC-ccCc-HHHhc
Confidence 35899999988765444 556666678999999999986311 12234456789999999999999 9888 67999
Q ss_pred cCCCcEeecCCCCCCcccc--cccccCCCCcEEEeCCccc
Q 037574 651 LYNLQTLELSWCSNLRNLP--QGMGKLINLRHVVNVGTPL 688 (961)
Q Consensus 651 L~~L~~L~l~~~~~l~~lP--~~i~~L~~L~~L~l~~~~l 688 (961)
|+|||+|.+++=. +..-+ ..+..|++|++||++....
T Consensus 194 LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 194 LKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred cccHHHHhccCCC-CCchhhHHHHhcccCCCeeecccccc
Confidence 9999999998633 33322 3678899999999966543
No 174
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.00012 Score=73.84 Aligned_cols=202 Identities=18% Similarity=0.114 Sum_probs=113.7
Q ss_pred ccCCcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCC---CcccCCcchhccCCCcEeecCCCC-CCcccccc
Q 037574 596 DQLTCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNN---KIKKLPKTLCELYNLQTLELSWCS-NLRNLPQG 671 (961)
Q Consensus 596 ~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~---~i~~lp~~i~~L~~L~~L~l~~~~-~l~~lP~~ 671 (961)
..+..++.|||.+|.-.. ..++-.-+.+|++|++|+|+.|+ .|+.+| -.+.+|++|.|.++. ........
T Consensus 68 ~~~~~v~elDL~~N~iSd---WseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~ 141 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISD---WSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSS 141 (418)
T ss_pred HHhhhhhhhhcccchhcc---HHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhhh
Confidence 567889999999984111 12233335689999999999886 233444 356789999998765 12233345
Q ss_pred cccCCCCcEEEeCCcccccCCcCCCCCCCCCcCCceEecCCCCCCCCCChhhhhcccccCC----ceeEcCCCCCChhhh
Q 037574 672 MGKLINLRHVVNVGTPLSYMPKGIERWSCLRTLSEFIVSGGNDDKKASKLECLKSLNHLQG----SLNIKGLGNVDKDEI 747 (961)
Q Consensus 672 i~~L~~L~~L~l~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~----~L~i~~l~~~~~~~~ 747 (961)
+..++.++.|+++.|++..+- .+.+-. ...-.++..|..+.. .+.+..+
T Consensus 142 l~~lP~vtelHmS~N~~rq~n----------------~Dd~c~---e~~s~~v~tlh~~~c~~~~w~~~~~l-------- 194 (418)
T KOG2982|consen 142 LDDLPKVTELHMSDNSLRQLN----------------LDDNCI---EDWSTEVLTLHQLPCLEQLWLNKNKL-------- 194 (418)
T ss_pred hhcchhhhhhhhccchhhhhc----------------cccccc---cccchhhhhhhcCCcHHHHHHHHHhH--------
Confidence 667888888888777544321 111000 000011111111110 0011111
Q ss_pred HhhccccccccCceeEEecCCCCcCCCccchHHHHhcCCCCCCcCceEEeeecCccccccc---cccccCceEEEEeCCC
Q 037574 748 FKAELSKREKLLALGISFDRDDEEGRKKEDDEAVVEGLELPSNLESMEMFYYRGESISLMM---IMLSNKLRSLTLDRCV 824 (961)
Q Consensus 748 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~l~~L~~L~L~~~~ 824 (961)
-...+++..+.+..++..+ ...-++..+++.+..|.+..+... +|.+ ...++.|..|.+.+++
T Consensus 195 ----~r~Fpnv~sv~v~e~PlK~--------~s~ek~se~~p~~~~LnL~~~~id--swasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 195 ----SRIFPNVNSVFVCEGPLKT--------ESSEKGSEPFPSLSCLNLGANNID--SWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred ----HhhcccchheeeecCcccc--------hhhcccCCCCCcchhhhhcccccc--cHHHHHHHcCCchhheeeccCCc
Confidence 1223677777777765431 223345566677777777665433 4543 2368889999999887
Q ss_pred CCCcCC-------CCCCCCccceeeec
Q 037574 825 NLKQLP-------GLGGLPSLESLTLR 844 (961)
Q Consensus 825 ~~~~l~-------~l~~lp~L~~L~L~ 844 (961)
.++.+. .++.|++++.|.=+
T Consensus 261 l~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 261 LSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred ccccccCCcceEEEEeeccceEEecCc
Confidence 776654 25677888776543
No 175
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.25 E-value=0.0077 Score=73.76 Aligned_cols=166 Identities=18% Similarity=0.200 Sum_probs=85.7
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVA 242 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 242 (961)
.+++|.+..+++|.+++....... ....+++.++|++|+|||++|+.+++ .....|- -++++...+..++.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~----~~~~~~lll~GppG~GKT~lAk~iA~--~l~~~~~---~i~~~~~~~~~~i~ 390 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRG----KMKGPILCLVGPPGVGKTSLGKSIAK--ALNRKFV---RFSLGGVRDEAEIR 390 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhc----CCCCceEEEECCCCCCHHHHHHHHHH--HhcCCeE---EEeCCCcccHHHHc
Confidence 458899999999988765321000 02345899999999999999999998 3443442 22333332332221
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCCh----hhHHHHHHhccC--------C-------CC
Q 037574 243 KAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACP----RYWEQLMYSLKS--------G-------SE 303 (961)
Q Consensus 243 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~----~~~~~l~~~l~~--------~-------~~ 303 (961)
. . ...........+.+.+... ..++-+++||++. .... +.-..+...+.. . ..
T Consensus 391 g----~--~~~~~g~~~g~i~~~l~~~-~~~~~villDEid-k~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s 462 (775)
T TIGR00763 391 G----H--RRTYVGAMPGRIIQGLKKA-KTKNPLFLLDEID-KIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLS 462 (775)
T ss_pred C----C--CCceeCCCCchHHHHHHHh-CcCCCEEEEechh-hcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccC
Confidence 1 0 0000111112233333333 2334488999994 1111 112233333321 1 01
Q ss_pred CcEEEEecCCCc-ccccccccccccCCCCCcceeecCCCChHHHHHHHHHHH
Q 037574 304 GSRILVTRRGEK-NGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIA 354 (961)
Q Consensus 304 gs~ilvTtR~~~-v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 354 (961)
..-+|.||.... +...+ ..+...+.+.+++.++-.++++++.
T Consensus 463 ~v~~I~TtN~~~~i~~~L---------~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 463 KVIFIATANSIDTIPRPL---------LDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred CEEEEEecCCchhCCHHH---------hCCeeEEecCCCCHHHHHHHHHHHH
Confidence 223344544322 11111 1233688999999999888887654
No 176
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.25 E-value=0.0068 Score=67.45 Aligned_cols=167 Identities=15% Similarity=0.163 Sum_probs=87.7
Q ss_pred CccccchHHHHHHHHHHhCCCCCCc---CCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEE---SGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEI 239 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 239 (961)
.++.|.+..++++.+.+.-.-...+ .-+-...+-+.++|++|+|||+||+.+++. ....| +.+.. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f-----i~i~~----s 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF-----IRVVG----S 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----H
Confidence 4588999888888776642111000 001124567889999999999999999984 33333 22211 1
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCC----------CChhhHHHHHHh---ccC--CCCC
Q 037574 240 RVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWN----------ACPRYWEQLMYS---LKS--GSEG 304 (961)
Q Consensus 240 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~----------~~~~~~~~l~~~---l~~--~~~g 304 (961)
.+ .....+. ....+.+.+.......+.+|++|++..- .+......+... +.. ...+
T Consensus 214 ~l----~~k~~ge-----~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~ 284 (398)
T PTZ00454 214 EF----VQKYLGE-----GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTN 284 (398)
T ss_pred HH----HHHhcch-----hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCC
Confidence 11 1111110 1111222222333467899999998410 011111122222 221 1245
Q ss_pred cEEEEecCCCccccc-ccccccccCCCCCcceeecCCCChHHHHHHHHHHHc
Q 037574 305 SRILVTRRGEKNGTN-MTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAF 355 (961)
Q Consensus 305 s~ilvTtR~~~v~~~-~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 355 (961)
..||.||...+.... +-.. +.-...+.+...+.++...+|+.+..
T Consensus 285 v~VI~aTN~~d~LDpAllR~------GRfd~~I~~~~P~~~~R~~Il~~~~~ 330 (398)
T PTZ00454 285 VKVIMATNRADTLDPALLRP------GRLDRKIEFPLPDRRQKRLIFQTITS 330 (398)
T ss_pred EEEEEecCCchhCCHHHcCC------CcccEEEEeCCcCHHHHHHHHHHHHh
Confidence 678888875543322 1110 11115688888899998888887653
No 177
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=2e-05 Score=79.27 Aligned_cols=85 Identities=20% Similarity=0.171 Sum_probs=56.5
Q ss_pred CcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCccccc--ccccCC
Q 037574 599 TCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQ--GMGKLI 676 (961)
Q Consensus 599 ~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~--~i~~L~ 676 (961)
..|++|||+... -....+-.-+..+.+|+.|+|.++..-..+-..|.+-.+|+.|+++.|+.+++..- -+..++
T Consensus 185 sRlq~lDLS~s~----it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs 260 (419)
T KOG2120|consen 185 SRLQHLDLSNSV----ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCS 260 (419)
T ss_pred hhhHHhhcchhh----eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhh
Confidence 358889999862 11223334456788888899988873233445677788899999999887765432 245677
Q ss_pred CCcEEEeCCcc
Q 037574 677 NLRHVVNVGTP 687 (961)
Q Consensus 677 ~L~~L~l~~~~ 687 (961)
.|..|+++.+.
T Consensus 261 ~L~~LNlsWc~ 271 (419)
T KOG2120|consen 261 RLDELNLSWCF 271 (419)
T ss_pred hHhhcCchHhh
Confidence 77777775543
No 178
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.22 E-value=5.6e-05 Score=85.85 Aligned_cols=99 Identities=32% Similarity=0.510 Sum_probs=77.2
Q ss_pred cCCcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccccccccCC
Q 037574 597 QLTCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLI 676 (961)
Q Consensus 597 ~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~ 676 (961)
.+..+..+++..+ . +...-+.++.+.+|.+|++.+|. ++.+...+..+.+|++|++++|. |..+ .++..++
T Consensus 70 ~l~~l~~l~l~~n-----~-i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~-I~~i-~~l~~l~ 140 (414)
T KOG0531|consen 70 SLTSLKELNLRQN-----L-IAKILNHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNK-ITKL-EGLSTLT 140 (414)
T ss_pred HhHhHHhhccchh-----h-hhhhhcccccccceeeeeccccc-hhhcccchhhhhcchheeccccc-cccc-cchhhcc
Confidence 4566666677776 3 56555568889999999999999 88887768899999999999987 7777 4778888
Q ss_pred CCcEEEeCCcccccCCcCCCCCCCCCcCC
Q 037574 677 NLRHVVNVGTPLSYMPKGIERWSCLRTLS 705 (961)
Q Consensus 677 ~L~~L~l~~~~l~~~p~~i~~L~~L~~L~ 705 (961)
.|+.|++.+|.+..+. ++..+++|+.+.
T Consensus 141 ~L~~L~l~~N~i~~~~-~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 141 LLKELNLSGNLISDIS-GLESLKSLKLLD 168 (414)
T ss_pred chhhheeccCcchhcc-CCccchhhhccc
Confidence 8999999999887653 344455665554
No 179
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.21 E-value=0.00043 Score=75.38 Aligned_cols=83 Identities=19% Similarity=0.274 Sum_probs=46.7
Q ss_pred CCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcCC
Q 037574 548 EKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRL 627 (961)
Q Consensus 548 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l 627 (961)
...++|+++.|.+ ..+| .-.++|++|.+.+|... ..+|+.+ .++|+.|++++| ..+..+|..
T Consensus 52 ~~l~~L~Is~c~L-~sLP---~LP~sLtsL~Lsnc~nL---tsLP~~L--P~nLe~L~Ls~C-----s~L~sLP~s---- 113 (426)
T PRK15386 52 RASGRLYIKDCDI-ESLP---VLPNELTEITIENCNNL---TTLPGSI--PEGLEKLTVCHC-----PEISGLPES---- 113 (426)
T ss_pred cCCCEEEeCCCCC-cccC---CCCCCCcEEEccCCCCc---ccCCchh--hhhhhheEccCc-----ccccccccc----
Confidence 5677888887765 3444 12346888888776532 1233333 246788888877 225566653
Q ss_pred CCcceEeccCCC--CcccCCcchhc
Q 037574 628 IHLRYLNLSKNN--KIKKLPKTLCE 650 (961)
Q Consensus 628 ~~Lr~L~L~~~~--~i~~lp~~i~~ 650 (961)
|+.|+++++. .+..+|.++..
T Consensus 114 --Le~L~L~~n~~~~L~~LPssLk~ 136 (426)
T PRK15386 114 --VRSLEIKGSATDSIKNVPNGLTS 136 (426)
T ss_pred --cceEEeCCCCCcccccCcchHhh
Confidence 4555555433 25566665443
No 180
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.21 E-value=0.014 Score=62.71 Aligned_cols=94 Identities=10% Similarity=0.062 Sum_probs=67.0
Q ss_pred CCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCc-cccc-ccccccccCCCCCcceeecCCCChHHHHHH
Q 037574 272 GKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEK-NGTN-MTEIGLGEKDGTNMTEIGLGELSAKECRSL 349 (961)
Q Consensus 272 ~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~-~~~~~~~~~~~~~~~~~~l~~L~~~~~~~L 349 (961)
+.+-++|+|++. .-.......+...+..-..++.+|++|.+.+ +... .+.. ..+.+.+++++++.+.
T Consensus 107 ~~~kV~iI~~ae-~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRC----------q~~~~~~~~~~~~~~~ 175 (319)
T PRK06090 107 NGYRLFVIEPAD-AMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRC----------QQWVVTPPSTAQAMQW 175 (319)
T ss_pred CCceEEEecchh-hhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc----------eeEeCCCCCHHHHHHH
Confidence 455688899995 5566788888888888777777777666543 3332 2333 8899999999999998
Q ss_pred HHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHHH
Q 037574 350 FRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKILG 388 (961)
Q Consensus 350 f~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~~ 388 (961)
+.... . . .+..++..++|.|+.+..+.
T Consensus 176 L~~~~----~-~-------~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 176 LKGQG----I-T-------VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred HHHcC----C-c-------hHHHHHHHcCCCHHHHHHHh
Confidence 86641 1 1 13567889999999776553
No 181
>PRK12377 putative replication protein; Provisional
Probab=97.20 E-value=0.0011 Score=68.43 Aligned_cols=101 Identities=22% Similarity=0.129 Sum_probs=56.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCC
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGK 273 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 273 (961)
...+.++|..|+|||+||..+++. .......++++++. +++..+-...... ...+. +.+.+ .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~~~----~~~~~----~l~~l-~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYDNG----QSGEK----FLQEL-CK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHhcc----chHHH----HHHHh-cC
Confidence 357899999999999999999994 33334445677643 4444443333211 11111 22222 35
Q ss_pred ceEEEeecccCCCChhhHH--HHHHhccCC-CCCcEEEEecC
Q 037574 274 KVLLVLDDVWWNACPRYWE--QLMYSLKSG-SEGSRILVTRR 312 (961)
Q Consensus 274 r~LlVlDdvw~~~~~~~~~--~l~~~l~~~-~~gs~ilvTtR 312 (961)
-=|||+||+- ......|. .+...+... .+.--+||||.
T Consensus 164 ~dLLiIDDlg-~~~~s~~~~~~l~~ii~~R~~~~~ptiitSN 204 (248)
T PRK12377 164 VDLLVLDEIG-IQRETKNEQVVLNQIIDRRTASMRSVGMLTN 204 (248)
T ss_pred CCEEEEcCCC-CCCCCHHHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 5699999994 22233343 344444332 22334778875
No 182
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.19 E-value=3.9e-05 Score=68.37 Aligned_cols=96 Identities=25% Similarity=0.336 Sum_probs=58.3
Q ss_pred ccEEEccCCChhhhhhhcccch---hhcCCCCcceEeccCCCCcccCCcchhc-cCCCcEeecCCCCCCcccccccccCC
Q 037574 601 LRTLELSNHDNVLCKVIKKVPK---QIKRLIHLRYLNLSKNNKIKKLPKTLCE-LYNLQTLELSWCSNLRNLPQGMGKLI 676 (961)
Q Consensus 601 Lr~L~L~~~~~~~~~~~~~lp~---~i~~l~~Lr~L~L~~~~~i~~lp~~i~~-L~~L~~L~l~~~~~l~~lP~~i~~L~ 676 (961)
+..|+|++|. +..+++ .+....+|...+|++|. ++.+|+.+.. .+-+.+|++++|. ++.+|..+..++
T Consensus 29 ~h~ldLssc~------lm~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~ 100 (177)
T KOG4579|consen 29 LHFLDLSSCQ------LMYIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMP 100 (177)
T ss_pred hhhcccccch------hhHHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhH
Confidence 4456666663 333333 34455566666777776 7777766543 3367777777655 777777777777
Q ss_pred CCcEEEeCCcccccCCcCCCCCCCCCcC
Q 037574 677 NLRHVVNVGTPLSYMPKGIERWSCLRTL 704 (961)
Q Consensus 677 ~L~~L~l~~~~l~~~p~~i~~L~~L~~L 704 (961)
.|+.|++..|.+...|.-|..|.+|-.|
T Consensus 101 aLr~lNl~~N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 101 ALRSLNLRFNPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred HhhhcccccCccccchHHHHHHHhHHHh
Confidence 7777777777666666555544444333
No 183
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.19 E-value=0.0055 Score=75.44 Aligned_cols=45 Identities=27% Similarity=0.393 Sum_probs=37.8
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCC
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
..++||+.+++++++.|... ...-+.++|.+|+|||++|+.+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~----------~~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR----------TKNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC----------CcCceEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999763 3345669999999999999999873
No 184
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.19 E-value=0.0032 Score=70.53 Aligned_cols=168 Identities=14% Similarity=0.158 Sum_probs=88.2
Q ss_pred CccccchHHHHHHHHHHhCCCCCCc---CCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEE---SGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEI 239 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 239 (961)
.++.|.+..++++.+.+.-.-...+ .-+-....-+.++|++|+|||++|+.+++. ....| +.+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f---i~V~~se----- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF---LRVVGSE----- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE---EEEecch-----
Confidence 3578999999888887642111000 000123456889999999999999999983 44344 2222111
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCC-------C---ChhhHHHHHHhc---cC--CCCC
Q 037574 240 RVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWN-------A---CPRYWEQLMYSL---KS--GSEG 304 (961)
Q Consensus 240 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~-------~---~~~~~~~l~~~l---~~--~~~g 304 (961)
+ .....+. ....+...+.....+.+.+|+||++..- . +.+....+...+ .. ...+
T Consensus 253 -L----~~k~~Ge-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 253 -L----IQKYLGD-----GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred -h----hhhhcch-----HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 1 1111110 1111222222233467889999998310 0 011111222222 11 1235
Q ss_pred cEEEEecCCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHc
Q 037574 305 SRILVTRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAF 355 (961)
Q Consensus 305 s~ilvTtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 355 (961)
..||.||...+.....-. ..+.-...+.+...+.++..++|..+..
T Consensus 323 V~VI~ATNr~d~LDpaLl-----RpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 323 VKVIMATNRIESLDPALI-----RPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred eEEEEecCChHHhhHHhc-----cCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 678888865543322100 0011116789999999999999987753
No 185
>PRK08118 topology modulation protein; Reviewed
Probab=97.16 E-value=0.00018 Score=69.88 Aligned_cols=35 Identities=31% Similarity=0.610 Sum_probs=27.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhCChhhh-ccCceeEE
Q 037574 195 PVIWILGKEGIGKTALARQVFDDSDVK-ANFDKRIW 229 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 229 (961)
+.|.|+|++|+||||||+.+++...+. -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999854333 45677776
No 186
>PRK08181 transposase; Validated
Probab=97.13 E-value=0.0021 Score=67.20 Aligned_cols=101 Identities=19% Similarity=0.226 Sum_probs=55.1
Q ss_pred cEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCc
Q 037574 195 PVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKK 274 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 274 (961)
.-+.++|++|+|||.||..+.+. .......++|+++ .+++..+..... ..+.+..... + .+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~------~~L~~~l~~a~~-----~~~~~~~l~~----l-~~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT------TDLVQKLQVARR-----ELQLESAIAK----L-DKF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH------HHHHHHHHHHHh-----CCcHHHHHHH----H-hcC
Confidence 34899999999999999999883 3333334566653 445544433321 1122222222 2 234
Q ss_pred eEEEeecccCCCChhhH--HHHHHhccCCCCCcEEEEecCCC
Q 037574 275 VLLVLDDVWWNACPRYW--EQLMYSLKSGSEGSRILVTRRGE 314 (961)
Q Consensus 275 ~LlVlDdvw~~~~~~~~--~~l~~~l~~~~~gs~ilvTtR~~ 314 (961)
=|||+||+. ......| +.+...+.....+..+||||...
T Consensus 169 dLLIIDDlg-~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLA-YVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccc-cccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 599999995 2222222 23444443321123688888743
No 187
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.11 E-value=0.00021 Score=74.00 Aligned_cols=248 Identities=19% Similarity=0.173 Sum_probs=126.9
Q ss_pred cccCCCCccEEEeccCCCccc-cccchhhhccCCcccEEEccCCChhhhhhhcccc-------hhhcCCCCcceEeccCC
Q 037574 567 SVYNQKKLRSLGVEHGGGFMN-GIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVP-------KQIKRLIHLRYLNLSKN 638 (961)
Q Consensus 567 ~~~~~~~Lr~L~l~~~~~~~~-~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp-------~~i~~l~~Lr~L~L~~~ 638 (961)
.......+..+.+++|..-.. ...+...+.+-+.||.-++++-. .......+| +.+-..++|++|+||+|
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f--tGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMF--TGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhh--cCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 344455666667776651000 01234456666777777777642 000012223 33455668888888888
Q ss_pred CCcc-----cCCcchhccCCCcEeecCCCCCCcccc--------------cccccCCCCcEEEeCCcccccCCcCCCCCC
Q 037574 639 NKIK-----KLPKTLCELYNLQTLELSWCSNLRNLP--------------QGMGKLINLRHVVNVGTPLSYMPKGIERWS 699 (961)
Q Consensus 639 ~~i~-----~lp~~i~~L~~L~~L~l~~~~~l~~lP--------------~~i~~L~~L~~L~l~~~~l~~~p~~i~~L~ 699 (961)
- +. .+-.-|..++.|+.|.|.+|. +...- ..+..-++||.+..+.|.+..-+..
T Consensus 103 A-~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~----- 175 (382)
T KOG1909|consen 103 A-FGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGAT----- 175 (382)
T ss_pred c-cCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHH-----
Confidence 6 33 122346678888888888776 32211 1123334556655555544332210
Q ss_pred CCCcCCceEecCCCCCCCCCChhhhhcccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchH
Q 037574 700 CLRTLSEFIVSGGNDDKKASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDE 779 (961)
Q Consensus 700 ~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 779 (961)
.....+...+.|..++ +...+... ....+....+..+++|+.|+|..|-+.. ....
T Consensus 176 ----------------~~A~~~~~~~~leevr--~~qN~I~~-eG~~al~eal~~~~~LevLdl~DNtft~-----egs~ 231 (382)
T KOG1909|consen 176 ----------------ALAEAFQSHPTLEEVR--LSQNGIRP-EGVTALAEALEHCPHLEVLDLRDNTFTL-----EGSV 231 (382)
T ss_pred ----------------HHHHHHHhccccceEE--EecccccC-chhHHHHHHHHhCCcceeeecccchhhh-----HHHH
Confidence 0000111111222111 11111111 1123445566777888888888775431 0112
Q ss_pred HHHhcCCCCCCcCceEEeeecCccc---cc--cccccccCceEEEEeCCCCCCc----C-CCCCCCCccceeeecccc
Q 037574 780 AVVEGLELPSNLESMEMFYYRGESI---SL--MMIMLSNKLRSLTLDRCVNLKQ----L-PGLGGLPSLESLTLRNMK 847 (961)
Q Consensus 780 ~~l~~l~~~~~L~~L~l~~~~~~~~---~~--~~~~~l~~L~~L~L~~~~~~~~----l-~~l~~lp~L~~L~L~~~~ 847 (961)
..-+.++..++|+.|.+..|....- .. ......++|+.|.|.+|.-... + -.....|.|+.|.|++|.
T Consensus 232 ~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 2334555567888888887765432 11 0113478888888888742211 1 134558899999998853
No 188
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.10 E-value=0.0063 Score=74.09 Aligned_cols=126 Identities=17% Similarity=0.228 Sum_probs=71.5
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVA 242 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 242 (961)
..++|.+..++.+...+.....+-. .+.....++.++|+.|+|||+||+.+++. . +...+.++.+...+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~-~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~~-- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLG-NPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKHT-- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCC-CCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhccc--
Confidence 3578888888888887764211000 00023456889999999999999999872 3 23345566554322111
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhcCC-ceEEEeecccCCCChhhHHHHHHhccCC
Q 037574 243 KAILESLKGSVSSQVEMETVLQYINEFVQGK-KVLLVLDDVWWNACPRYWEQLMYSLKSG 301 (961)
Q Consensus 243 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k-r~LlVlDdvw~~~~~~~~~~l~~~l~~~ 301 (961)
+...++... .....++ ...+.+.++.+ ..+|+||++. ..+++.+..+...+..+
T Consensus 526 --~~~lig~~~-gyvg~~~-~~~l~~~~~~~p~~VvllDEie-ka~~~~~~~Ll~~ld~g 580 (731)
T TIGR02639 526 --VSRLIGAPP-GYVGFEQ-GGLLTEAVRKHPHCVLLLDEIE-KAHPDIYNILLQVMDYA 580 (731)
T ss_pred --HHHHhcCCC-CCcccch-hhHHHHHHHhCCCeEEEEechh-hcCHHHHHHHHHhhccC
Confidence 111122111 1111111 11233333333 4599999997 66778888888877654
No 189
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.09 E-value=0.0031 Score=68.07 Aligned_cols=101 Identities=17% Similarity=0.168 Sum_probs=65.0
Q ss_pred HHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhc-cCce-eEEEEeCC-CCCHHHHHHHHHH
Q 037574 171 EKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKA-NFDK-RIWVSASC-PRDEIRVAKAILE 247 (961)
Q Consensus 171 ~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~-~~wv~~s~-~~~~~~~~~~il~ 247 (961)
...++++.+..- +.-..+.|+|..|+|||||++.+.+. +.. +-+. ++|+.+.+ ..++.++++.+..
T Consensus 119 ~~~RvID~l~Pi---------GkGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~ 187 (380)
T PRK12608 119 LSMRVVDLVAPI---------GKGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKG 187 (380)
T ss_pred hhHhhhhheeec---------CCCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhh
Confidence 334577777653 23356799999999999999999883 333 2243 46767665 4477888888888
Q ss_pred HhcCCCCCcccH-----HHHHHHHHHHh--cCCceEEEeecc
Q 037574 248 SLKGSVSSQVEM-----ETVLQYINEFV--QGKKVLLVLDDV 282 (961)
Q Consensus 248 ~l~~~~~~~~~~-----~~~~~~l~~~l--~~kr~LlVlDdv 282 (961)
.+.....+.... ......+.+++ .+++++||+|++
T Consensus 188 ~Vvast~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 188 EVYASTFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred hEEeecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 776544222111 11122222222 589999999999
No 190
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.09 E-value=0.0061 Score=75.37 Aligned_cols=141 Identities=19% Similarity=0.262 Sum_probs=79.1
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVA 242 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 242 (961)
..++|.+..++.+...+.....+-. .+.....++.++|+.|+|||++|+.+... ....-...+.++++...+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~-~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~-- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLS-DPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHS-- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCC-CCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccch--
Confidence 4589999999999998875321100 00022457889999999999999999872 222222334455554322111
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhcCC-ceEEEeecccCCCChhhHHHHHHhccCCC-----------CCcEEEEe
Q 037574 243 KAILESLKGSVSSQVEMETVLQYINEFVQGK-KVLLVLDDVWWNACPRYWEQLMYSLKSGS-----------EGSRILVT 310 (961)
Q Consensus 243 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k-r~LlVlDdvw~~~~~~~~~~l~~~l~~~~-----------~gs~ilvT 310 (961)
...+.+..+.....++ ...+.+.++.+ ..+|+||++. ..+++.+..+...+..+. ..+-||+|
T Consensus 640 ---~~~l~g~~~g~~g~~~-~g~l~~~v~~~p~~vlllDeie-ka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~T 714 (852)
T TIGR03346 640 ---VARLIGAPPGYVGYEE-GGQLTEAVRRKPYSVVLFDEVE-KAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMT 714 (852)
T ss_pred ---HHHhcCCCCCccCccc-ccHHHHHHHcCCCcEEEEeccc-cCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEe
Confidence 1122121111111111 11223333323 3489999996 667888888888876541 23447777
Q ss_pred cCC
Q 037574 311 RRG 313 (961)
Q Consensus 311 tR~ 313 (961)
|..
T Consensus 715 Sn~ 717 (852)
T TIGR03346 715 SNL 717 (852)
T ss_pred CCc
Confidence 764
No 191
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.08 E-value=0.011 Score=62.40 Aligned_cols=42 Identities=19% Similarity=0.262 Sum_probs=28.7
Q ss_pred EEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHH
Q 037574 196 VIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVA 242 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 242 (961)
-|.+.|++|+|||+||+.+.+ .... ..+++++....+..+++
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHh
Confidence 467899999999999999986 3322 23455655555554443
No 192
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.07 E-value=0.0038 Score=61.60 Aligned_cols=123 Identities=14% Similarity=0.255 Sum_probs=74.7
Q ss_pred CCCCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHH
Q 037574 160 IDPLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEI 239 (961)
Q Consensus 160 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 239 (961)
++-..++|.+..++.+++-...-..+ ..-.-|.+||.-|+|||+|++.+.+ .+....-..+-|+-.+-
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G------~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glrLVEV~k~dl---- 124 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEG------LPANNVLLWGARGTGKSSLVKALLN--EYADEGLRLVEVDKEDL---- 124 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcC------CcccceEEecCCCCChHHHHHHHHH--HHHhcCCeEEEEcHHHH----
Confidence 34456899998888887643321111 2234578999999999999999998 45544433333321111
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC---CCCcEEEEecCC
Q 037574 240 RVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG---SEGSRILVTRRG 313 (961)
Q Consensus 240 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~---~~gs~ilvTtR~ 313 (961)
.+...+.+.|+. ..+||+|+.||+--+++.+.+..++..+..+ .+...++..|.+
T Consensus 125 -----------------~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 125 -----------------ATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred -----------------hhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 111222222222 4689999999996566677888899888753 233344444443
No 193
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.06 E-value=0.021 Score=62.16 Aligned_cols=179 Identities=12% Similarity=0.055 Sum_probs=101.5
Q ss_pred HHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCCh---hhhccCcee-----EEEEeCCCCCHHHHH
Q 037574 171 EKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDS---DVKANFDKR-----IWVSASCPRDEIRVA 242 (961)
Q Consensus 171 ~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~---~~~~~F~~~-----~wv~~s~~~~~~~~~ 242 (961)
.-+++...+..+ .-...+.+.|+.|+||+++|..+.+-- .....-.|- -++.....+|+..+
T Consensus 10 ~~~~l~~~~~~~---------rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i- 79 (334)
T PRK07993 10 DYEQLVGSYQAG---------RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL- 79 (334)
T ss_pred HHHHHHHHHHcC---------CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE-
Confidence 345566666542 335678899999999999999875521 000000000 00111111111100
Q ss_pred HHHHHHhcCCC-CCcccHHHHHHHHHHHh-----cCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCc-
Q 037574 243 KAILESLKGSV-SSQVEMETVLQYINEFV-----QGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEK- 315 (961)
Q Consensus 243 ~~il~~l~~~~-~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~- 315 (961)
.... ......+++.+ +.+.+ .+++-++|+|++. ......-..+...+..-..++.+|++|.+.+
T Consensus 80 -------~p~~~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae-~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~ 150 (334)
T PRK07993 80 -------TPEKGKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAA-LLTDAAANALLKTLEEPPENTWFFLACREPAR 150 (334)
T ss_pred -------ecccccccCCHHHHHH-HHHHHhhccccCCceEEEEcchH-hhCHHHHHHHHHHhcCCCCCeEEEEEECChhh
Confidence 0000 01123333332 22222 3667799999995 5556677788888887777777777776543
Q ss_pred cccc-ccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHH
Q 037574 316 NGTN-MTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKIL 387 (961)
Q Consensus 316 v~~~-~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~ 387 (961)
+... .+.. ..+.+.+++++++.+.+.... + . + .+.+..++..++|.|..+..+
T Consensus 151 lLpTIrSRC----------q~~~~~~~~~~~~~~~L~~~~-~--~--~----~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 151 LLATLRSRC----------RLHYLAPPPEQYALTWLSREV-T--M--S----QDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred ChHHHHhcc----------ccccCCCCCHHHHHHHHHHcc-C--C--C----HHHHHHHHHHcCCCHHHHHHH
Confidence 4332 2333 789999999999998886532 1 1 1 123667899999999755433
No 194
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.05 E-value=0.018 Score=66.89 Aligned_cols=187 Identities=14% Similarity=0.152 Sum_probs=92.8
Q ss_pred CCccccchHHHHHHHHHHh---CCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCH
Q 037574 162 PLEFHGRNVEKKNILQLLK---GESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDE 238 (961)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~---~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 238 (961)
-.+++|-+..++++.+++. ....-.. .+....+-+.++|++|+|||+||+.+++.. ... ++.++.
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~-~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~---- 121 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTK-LGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISG---- 121 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHh-cCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccH----
Confidence 3467888777666555443 2110000 001234558899999999999999998742 222 233321
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCC---------CChhhHHHHH-Hh---ccC--CCC
Q 037574 239 IRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWN---------ACPRYWEQLM-YS---LKS--GSE 303 (961)
Q Consensus 239 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~---------~~~~~~~~l~-~~---l~~--~~~ 303 (961)
..+. ....+ .....+...+.......+.+|++||+..- ...+.+.... .. +.. ...
T Consensus 122 ~~~~----~~~~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 122 SDFV----EMFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred HHHH----HHHhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 1111 11111 01122333333444567799999999410 0011222222 12 211 123
Q ss_pred CcEEEEecCCCcccc-cccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCc
Q 037574 304 GSRILVTRRGEKNGT-NMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGL 380 (961)
Q Consensus 304 gs~ilvTtR~~~v~~-~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~ 380 (961)
+-.||.||....... .+... +.-...+.+...+.++-.++|+.+...... ..... ...|++.+.|.
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~------gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~~~----l~~la~~t~G~ 259 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRP------GRFDRQVVVDLPDIKGREEILKVHAKNKKL-APDVD----LKAVARRTPGF 259 (495)
T ss_pred CeEEEEecCChhhcCHHHhcC------CcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccchh----HHHHHHhCCCC
Confidence 445666775543222 11110 011157888888999999999887533221 11122 34667777763
No 195
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.02 E-value=0.0079 Score=74.11 Aligned_cols=141 Identities=19% Similarity=0.266 Sum_probs=77.0
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVA 242 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 242 (961)
..++|.+..++.+...+.....+-. .+.....++.++|+.|+|||+||+.+.+. ....-...+.+.++.... .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~-~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~-~--- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLS-DPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFME-K--- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhccc-CCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhh-h---
Confidence 3588999999988888764321000 00022357889999999999999999862 211122334454443211 1
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhcC-CceEEEeecccCCCChhhHHHHHHhccCCC-----------CCcEEEEe
Q 037574 243 KAILESLKGSVSSQVEMETVLQYINEFVQG-KKVLLVLDDVWWNACPRYWEQLMYSLKSGS-----------EGSRILVT 310 (961)
Q Consensus 243 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~-----------~gs~ilvT 310 (961)
.....+.+..+.....+. ...+.+.++. ..-+|+|||+. ..+++.+..+...+..+. ..+.||+|
T Consensus 641 -~~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEie-ka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~T 717 (857)
T PRK10865 641 -HSVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVE-KAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMT 717 (857)
T ss_pred -hhHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehh-hCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEe
Confidence 112222222211111111 1123333332 23699999995 567788888887776531 12336777
Q ss_pred cCC
Q 037574 311 RRG 313 (961)
Q Consensus 311 tR~ 313 (961)
|..
T Consensus 718 SN~ 720 (857)
T PRK10865 718 SNL 720 (857)
T ss_pred CCc
Confidence 764
No 196
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.93 E-value=0.006 Score=68.14 Aligned_cols=159 Identities=19% Similarity=0.260 Sum_probs=82.8
Q ss_pred ccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHH
Q 037574 164 EFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAK 243 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 243 (961)
.++||++.++.+...+... .-|.|.|++|+|||+||+.+.........|.. +.+.-. .+.+++.
T Consensus 21 ~i~gre~vI~lll~aalag------------~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~---~~~~ft-tp~DLfG 84 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG------------ESVFLLGPPGIAKSLIARRLKFAFQNARAFEY---LMTRFS-TPEEVFG 84 (498)
T ss_pred hccCcHHHHHHHHHHHccC------------CCEEEECCCChhHHHHHHHHHHHhcccCccee---eeeeec-CcHHhcC
Confidence 4899999999998888753 24889999999999999999873221223321 111100 1223322
Q ss_pred HH-HHHhcCCCCCcccHHHHHHHHHHHhcC---CceEEEeecccCCCChhhHHHHHHhccCCC---------CCcEEEEe
Q 037574 244 AI-LESLKGSVSSQVEMETVLQYINEFVQG---KKVLLVLDDVWWNACPRYWEQLMYSLKSGS---------EGSRILVT 310 (961)
Q Consensus 244 ~i-l~~l~~~~~~~~~~~~~~~~l~~~l~~---kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~---------~gs~ilvT 310 (961)
.+ +...... ..+.+...| .--++++|+++ ...+..-..+...+.... ...+++|+
T Consensus 85 ~l~i~~~~~~-----------g~f~r~~~G~L~~A~lLfLDEI~-rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ 152 (498)
T PRK13531 85 PLSIQALKDE-----------GRYQRLTSGYLPEAEIVFLDEIW-KAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVT 152 (498)
T ss_pred cHHHhhhhhc-----------CchhhhcCCccccccEEeecccc-cCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEE
Confidence 11 1111000 001111111 11289999998 666666666766663211 12356555
Q ss_pred cCCCcccccccccccccCCCCCcceeecCCCChHHH-HHHHHHH
Q 037574 311 RRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKEC-RSLFRQI 353 (961)
Q Consensus 311 tR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~-~~Lf~~~ 353 (961)
+.++ +.. -+....+-.+.- ...+.++++++++. .+++...
T Consensus 153 ATN~-LPE-~g~~leAL~DRF-liri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 153 ASNE-LPE-ADSSLEALYDRM-LIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred ECCC-Ccc-cCCchHHhHhhE-EEEEECCCCCchHHHHHHHHcc
Confidence 5543 221 000000000001 15688999985444 7777653
No 197
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.93 E-value=0.0074 Score=64.72 Aligned_cols=121 Identities=17% Similarity=0.255 Sum_probs=69.9
Q ss_pred cchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHH
Q 037574 167 GRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAIL 246 (961)
Q Consensus 167 Gr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 246 (961)
+|........+++.....+ ...+-+.|+|..|+|||.||..+++... ...+ .+.+++++ .++.++-
T Consensus 135 ~~~~~~~~~~~fi~~~~~~------~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~-~v~~~~~~------~l~~~lk 200 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPG------EKVKGLYLYGDFGVGKSYLLAAIANELA-KKGV-SSTLLHFP------EFIRELK 200 (306)
T ss_pred HHHHHHHHHHHHHHHhhcc------CCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCC-CEEEEEHH------HHHHHHH
Confidence 4555555566666543211 2346799999999999999999999532 2233 35566643 4555554
Q ss_pred HHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHH--HHHh-ccCC-CCCcEEEEecC
Q 037574 247 ESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQ--LMYS-LKSG-SEGSRILVTRR 312 (961)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~--l~~~-l~~~-~~gs~ilvTtR 312 (961)
...... +..+ .+.. + .+-=||||||+- .+....|.. +... +... ..+-.+|+||.
T Consensus 201 ~~~~~~-----~~~~---~l~~-l-~~~dlLiIDDiG-~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 201 NSISDG-----SVKE---KIDA-V-KEAPVLMLDDIG-AEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred HHHhcC-----cHHH---HHHH-h-cCCCEEEEecCC-CccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 444221 1222 2222 2 245689999995 444556653 4333 3322 24556888875
No 198
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.93 E-value=0.0062 Score=62.76 Aligned_cols=102 Identities=16% Similarity=0.208 Sum_probs=56.8
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCC
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGK 273 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 273 (961)
...+.++|.+|+|||+||..+++. ....-..+++++ ..+++..+-..... ...+.+. +.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it------~~~l~~~l~~~~~~---~~~~~~~----~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIIT------VADIMSAMKDTFSN---SETSEEQ----LLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE------HHHHHHHHHHHHhh---ccccHHH----HHHHhc-c
Confidence 457899999999999999999984 322233455564 34444444433321 1111222 223344 3
Q ss_pred ceEEEeecccCCCChhhHHH--HHHhccCC-CCCcEEEEecC
Q 037574 274 KVLLVLDDVWWNACPRYWEQ--LMYSLKSG-SEGSRILVTRR 312 (961)
Q Consensus 274 r~LlVlDdvw~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR 312 (961)
.=+||+||+. ......|+. +...+... ...-.+||||.
T Consensus 163 ~dlLvIDDig-~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSN 203 (244)
T PRK07952 163 VDLLVIDEIG-VQTESRYEKVIINQIVDRRSSSKRPTGMLTN 203 (244)
T ss_pred CCEEEEeCCC-CCCCCHHHHHHHHHHHHHHHhCCCCEEEeCC
Confidence 4588899995 333455653 33333321 22345777775
No 199
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.92 E-value=0.0041 Score=76.24 Aligned_cols=138 Identities=21% Similarity=0.266 Sum_probs=77.3
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVA 242 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 242 (961)
..++|.+..++.+.+.+.....+-. .+.....++.++|+.|+|||.||+.+... .-+.....+-++++...+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~-~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~~--- 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLE-DPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEAH--- 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCC-CCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhhh---
Confidence 4689999999999998864321100 01134458899999999999999988762 22222222233333221111
Q ss_pred HHHHHHhcCCCCCcc---cHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCC-----------CCcEEE
Q 037574 243 KAILESLKGSVSSQV---EMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGS-----------EGSRIL 308 (961)
Q Consensus 243 ~~il~~l~~~~~~~~---~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~-----------~gs~il 308 (961)
-...+.+..+... ....+...+++ ....+|+||++. ..+++.++.+...+..+. ..+-||
T Consensus 640 --~~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEie-ka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI 713 (852)
T TIGR03345 640 --TVSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVE-KAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVIL 713 (852)
T ss_pred --hhccccCCCCCcccccccchHHHHHHh---CCCcEEEEechh-hcCHHHHHHHHHHhhcceeecCCCcEEeccccEEE
Confidence 1112222211111 11122233322 455699999995 667788888887776553 345566
Q ss_pred EecC
Q 037574 309 VTRR 312 (961)
Q Consensus 309 vTtR 312 (961)
+||.
T Consensus 714 ~TSN 717 (852)
T TIGR03345 714 LTSN 717 (852)
T ss_pred EeCC
Confidence 6664
No 200
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.92 E-value=0.026 Score=61.24 Aligned_cols=94 Identities=12% Similarity=0.139 Sum_probs=65.6
Q ss_pred CCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCC-ccccc-ccccccccCCCCCcceeecCCCChHHHHHH
Q 037574 272 GKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGE-KNGTN-MTEIGLGEKDGTNMTEIGLGELSAKECRSL 349 (961)
Q Consensus 272 ~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~-~~~~~~~~~~~~~~~~~~l~~L~~~~~~~L 349 (961)
+++-++|+|++. ..+...+..+...+..-..++.+|++|.+. .+... .+.. ..+.+.+++.++..+.
T Consensus 131 ~~~kV~iI~~ae-~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRc----------q~i~~~~~~~~~~~~~ 199 (342)
T PRK06964 131 GGARVVVLYPAE-ALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRC----------RQFPMTVPAPEAAAAW 199 (342)
T ss_pred CCceEEEEechh-hcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcC----------EEEEecCCCHHHHHHH
Confidence 556688999996 667788889998998877777766666553 44332 2222 8899999999999998
Q ss_pred HHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHHH
Q 037574 350 FRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKILG 388 (961)
Q Consensus 350 f~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~~ 388 (961)
+.... . . + ...++..++|.|+.+..+.
T Consensus 200 L~~~~----~-~--~-----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 200 LAAQG----V-A--D-----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred HHHcC----C-C--h-----HHHHHHHcCCCHHHHHHHH
Confidence 87742 1 1 1 2235778899998655443
No 201
>CHL00176 ftsH cell division protein; Validated
Probab=96.92 E-value=0.0099 Score=70.13 Aligned_cols=185 Identities=16% Similarity=0.161 Sum_probs=95.1
Q ss_pred CccccchHHHHHHHHH---HhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHH
Q 037574 163 LEFHGRNVEKKNILQL---LKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEI 239 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~---L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 239 (961)
.++.|.++.++++.+. +.....-. .-+....+-|.++|++|+|||+||+.++... . +-|+.++..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~-~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~-----~p~i~is~s---- 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFT-AVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--E-----VPFFSISGS---- 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHh-hccCCCCceEEEECCCCCCHHHHHHHHHHHh--C-----CCeeeccHH----
Confidence 4578887666655444 33321100 0001234568999999999999999998842 2 223433311
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCC---------CChhhHHH-HHHhc---cC--CCCC
Q 037574 240 RVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWN---------ACPRYWEQ-LMYSL---KS--GSEG 304 (961)
Q Consensus 240 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~---------~~~~~~~~-l~~~l---~~--~~~g 304 (961)
.+. ....+ .....+...+.......+++|++||+..- .....++. +...+ .. ...+
T Consensus 251 ~f~----~~~~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 251 EFV----EMFVG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred HHH----HHhhh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 111 11100 01122333444455678899999999410 00112222 33332 21 2245
Q ss_pred cEEEEecCCCcccc-cccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCC
Q 037574 305 SRILVTRRGEKNGT-NMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKG 379 (961)
Q Consensus 305 s~ilvTtR~~~v~~-~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G 379 (961)
-.||.||...+... .+-.. +.-...+.+...+.++-.++++.++..... . .......|++.+.|
T Consensus 322 ViVIaaTN~~~~LD~ALlRp------GRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~----~d~~l~~lA~~t~G 386 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRP------GRFDRQITVSLPDREGRLDILKVHARNKKL-S----PDVSLELIARRTPG 386 (638)
T ss_pred eeEEEecCchHhhhhhhhcc------ccCceEEEECCCCHHHHHHHHHHHHhhccc-c----hhHHHHHHHhcCCC
Confidence 56676776544222 11110 011156788888999999999887643111 1 11234567777777
No 202
>PHA00729 NTP-binding motif containing protein
Probab=96.91 E-value=0.0053 Score=61.70 Aligned_cols=25 Identities=36% Similarity=0.421 Sum_probs=22.0
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.+...|.|+|.+|+||||||..+.+
T Consensus 15 ~~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 15 NGFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3445789999999999999999988
No 203
>PRK09183 transposase/IS protein; Provisional
Probab=96.91 E-value=0.0047 Score=64.73 Aligned_cols=100 Identities=19% Similarity=0.194 Sum_probs=51.7
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCC
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGK 273 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 273 (961)
...+.|+|++|+|||+||..++.... ...+ .+.+++ ..++...+..+.... .+...+.+.+ .+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~-~~G~-~v~~~~------~~~l~~~l~~a~~~~--------~~~~~~~~~~-~~ 164 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAV-RAGI-KVRFTT------AADLLLQLSTAQRQG--------RYKTTLQRGV-MA 164 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHH-HcCC-eEEEEe------HHHHHHHHHHHHHCC--------cHHHHHHHHh-cC
Confidence 34688999999999999999977422 2222 333443 223333332221110 1112222222 34
Q ss_pred ceEEEeecccCCCChhhHH--HHHHhccCC-CCCcEEEEecC
Q 037574 274 KVLLVLDDVWWNACPRYWE--QLMYSLKSG-SEGSRILVTRR 312 (961)
Q Consensus 274 r~LlVlDdvw~~~~~~~~~--~l~~~l~~~-~~gs~ilvTtR 312 (961)
.-++|+||+. ......+. .+...+... ..++ +||||.
T Consensus 165 ~dlLiiDdlg-~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn 204 (259)
T PRK09183 165 PRLLIIDEIG-YLPFSQEEANLFFQVIAKRYEKGS-MILTSN 204 (259)
T ss_pred CCEEEEcccc-cCCCChHHHHHHHHHHHHHHhcCc-EEEecC
Confidence 5699999996 22222222 244443321 2344 888876
No 204
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.90 E-value=5e-05 Score=85.38 Aligned_cols=62 Identities=23% Similarity=0.276 Sum_probs=43.6
Q ss_pred CcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcccccCCc
Q 037574 629 HLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLSYMPK 693 (961)
Q Consensus 629 ~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~~~p~ 693 (961)
.|...+.++|. +..+-.++.-|+.|+.|||++|. +...- .+..|++|+||+|+.|.+..+|.
T Consensus 165 ~L~~a~fsyN~-L~~mD~SLqll~ale~LnLshNk-~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~ 226 (1096)
T KOG1859|consen 165 KLATASFSYNR-LVLMDESLQLLPALESLNLSHNK-FTKVD-NLRRLPKLKHLDLSYNCLRHVPQ 226 (1096)
T ss_pred hHhhhhcchhh-HHhHHHHHHHHHHhhhhccchhh-hhhhH-HHHhcccccccccccchhccccc
Confidence 46666667776 66666777777778888887766 54443 56677778888887777777664
No 205
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.86 E-value=0.005 Score=62.73 Aligned_cols=87 Identities=20% Similarity=0.223 Sum_probs=53.5
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHh----cCC-----CCCcccHHHH
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESL----KGS-----VSSQVEMETV 262 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l----~~~-----~~~~~~~~~~ 262 (961)
+.-.++.|+|++|+|||+++.+++.. ....-..++|++... ++..++.+ +++.. ... ..+..+....
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHH
Confidence 45689999999999999999999873 333446789999875 66555443 33332 000 0111222233
Q ss_pred HHHHHHHhcC-CceEEEeecc
Q 037574 263 LQYINEFVQG-KKVLLVLDDV 282 (961)
Q Consensus 263 ~~~l~~~l~~-kr~LlVlDdv 282 (961)
...+.+.+.. +.-+||+|.+
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSi 106 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSF 106 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCc
Confidence 4445554433 4558888887
No 206
>PRK06921 hypothetical protein; Provisional
Probab=96.85 E-value=0.0063 Score=63.96 Aligned_cols=99 Identities=17% Similarity=0.232 Sum_probs=54.7
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhcc-CceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcC
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKAN-FDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQG 272 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 272 (961)
...+.++|..|+|||+||..+++. +... -..+++++.. +++..+...+ +.....+. .+ .
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~~------~l~~~l~~~~----------~~~~~~~~-~~-~ 176 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPFV------EGFGDLKDDF----------DLLEAKLN-RM-K 176 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEHH------HHHHHHHHHH----------HHHHHHHH-Hh-c
Confidence 467899999999999999999984 3332 3456677642 2333332221 11111222 22 2
Q ss_pred CceEEEeecccC----CCChhhHHH--HHHhccCC-CCCcEEEEecC
Q 037574 273 KKVLLVLDDVWW----NACPRYWEQ--LMYSLKSG-SEGSRILVTRR 312 (961)
Q Consensus 273 kr~LlVlDdvw~----~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR 312 (961)
+-=|||+||+.. .+....|.. +...+... ..+..+||||.
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn 223 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSE 223 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 346999999931 112234443 44444321 23446888875
No 207
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.85 E-value=0.0012 Score=64.79 Aligned_cols=98 Identities=21% Similarity=0.373 Sum_probs=50.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCc
Q 037574 195 PVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKK 274 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 274 (961)
.-+.++|..|+|||.||..+.+.. +...+ .+.|+++ .+++..+ ..... ....+.. + +.+. +-
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~-~~~g~-~v~f~~~------~~L~~~l----~~~~~-~~~~~~~---~-~~l~-~~ 109 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEA-IRKGY-SVLFITA------SDLLDEL----KQSRS-DGSYEEL---L-KRLK-RV 109 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT---EEEEEH------HHHHHHH----HCCHC-CTTHCHH---H-HHHH-TS
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHh-ccCCc-ceeEeec------Cceeccc----ccccc-ccchhhh---c-Cccc-cc
Confidence 469999999999999999998843 22222 4566653 3444443 22211 1112222 2 2233 34
Q ss_pred eEEEeecccCCCChhhHHH--HHHhccCC-CCCcEEEEecC
Q 037574 275 VLLVLDDVWWNACPRYWEQ--LMYSLKSG-SEGSRILVTRR 312 (961)
Q Consensus 275 ~LlVlDdvw~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR 312 (961)
=||||||+- ......|.. +...+... .++ .+||||.
T Consensus 110 dlLilDDlG-~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN 148 (178)
T PF01695_consen 110 DLLILDDLG-YEPLSEWEAELLFEIIDERYERK-PTIITSN 148 (178)
T ss_dssp SCEEEETCT-SS---HHHHHCTHHHHHHHHHT--EEEEEES
T ss_pred cEecccccc-eeeecccccccchhhhhHhhccc-CeEeeCC
Confidence 588899995 333334432 22222211 223 5888886
No 208
>PRK07261 topology modulation protein; Provisional
Probab=96.85 E-value=0.003 Score=61.78 Aligned_cols=22 Identities=41% Similarity=0.604 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 037574 196 VIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
.|.|+|++|+||||||+.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999763
No 209
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.84 E-value=0.0062 Score=62.87 Aligned_cols=87 Identities=23% Similarity=0.239 Sum_probs=52.0
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHH----hcCC-----CCCcccHHHH
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILES----LKGS-----VSSQVEMETV 262 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~----l~~~-----~~~~~~~~~~ 262 (961)
..-.++.|+|.+|+|||++|.+++.. ....-..++|++.. .++..++. +++.. +... .....+..+.
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSEA 96 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHHH
Confidence 34579999999999999999999874 33334678899877 55554432 33332 1000 0111122223
Q ss_pred HHHHHHHhcCCceEEEeecc
Q 037574 263 LQYINEFVQGKKVLLVLDDV 282 (961)
Q Consensus 263 ~~~l~~~l~~kr~LlVlDdv 282 (961)
.+.+.+.+..+.-++|+|.+
T Consensus 97 i~~~~~~~~~~~~lvVIDsi 116 (225)
T PRK09361 97 IRKAEKLAKENVGLIVLDSA 116 (225)
T ss_pred HHHHHHHHHhcccEEEEeCc
Confidence 34444444456668888887
No 210
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.83 E-value=0.0021 Score=63.74 Aligned_cols=130 Identities=25% Similarity=0.343 Sum_probs=64.6
Q ss_pred cchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeC----CCC-----C
Q 037574 167 GRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSAS----CPR-----D 237 (961)
Q Consensus 167 Gr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s----~~~-----~ 237 (961)
.+..+....++.|.. ..++.+.|++|.|||.||....-+.-..+.|+.++++.-. +.. +
T Consensus 4 p~~~~Q~~~~~al~~------------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~ 71 (205)
T PF02562_consen 4 PKNEEQKFALDALLN------------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGD 71 (205)
T ss_dssp --SHHHHHHHHHHHH-------------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---
T ss_pred CCCHHHHHHHHHHHh------------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCC
Confidence 456667777777762 3589999999999999999998765556788888776421 100 0
Q ss_pred HHH----HHHHHHHHhcCCCCCcccHHHHHHH------HHHHhcCC---ceEEEeecccCCCChhhHHHHHHhccCCCCC
Q 037574 238 EIR----VAKAILESLKGSVSSQVEMETVLQY------INEFVQGK---KVLLVLDDVWWNACPRYWEQLMYSLKSGSEG 304 (961)
Q Consensus 238 ~~~----~~~~il~~l~~~~~~~~~~~~~~~~------l~~~l~~k---r~LlVlDdvw~~~~~~~~~~l~~~l~~~~~g 304 (961)
..+ .+..+...+..-. .....+.+.+. -..+++|+ ..+||+|++. +-.+ +++...+-..+.|
T Consensus 72 ~~eK~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQ-N~t~---~~~k~ilTR~g~~ 146 (205)
T PF02562_consen 72 LEEKMEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQ-NLTP---EELKMILTRIGEG 146 (205)
T ss_dssp ------TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGG-G--H---HHHHHHHTTB-TT
T ss_pred HHHHHHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEeccc-CCCH---HHHHHHHcccCCC
Confidence 000 1111111111100 11111111110 00134554 3599999997 4344 4455556667789
Q ss_pred cEEEEecCC
Q 037574 305 SRILVTRRG 313 (961)
Q Consensus 305 s~ilvTtR~ 313 (961)
||||++--.
T Consensus 147 skii~~GD~ 155 (205)
T PF02562_consen 147 SKIIITGDP 155 (205)
T ss_dssp -EEEEEE--
T ss_pred cEEEEecCc
Confidence 999998543
No 211
>PRK06526 transposase; Provisional
Probab=96.82 E-value=0.004 Score=64.84 Aligned_cols=101 Identities=18% Similarity=0.195 Sum_probs=52.1
Q ss_pred cEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCc
Q 037574 195 PVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKK 274 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 274 (961)
.-+.|+|++|+|||+||..+..... ...+ .+.|++ ..+++..+...... . .....+.+ + .+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~-~~g~-~v~f~t------~~~l~~~l~~~~~~-----~---~~~~~l~~-l-~~~ 160 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRAC-QAGH-RVLFAT------AAQWVARLAAAHHA-----G---RLQAELVK-L-GRY 160 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHH-HCCC-chhhhh------HHHHHHHHHHHHhc-----C---cHHHHHHH-h-ccC
Confidence 4589999999999999999987432 2222 233432 33444444332111 1 11222322 2 234
Q ss_pred eEEEeecccCCCChhhHH-HHHHhccC-CCCCcEEEEecCCC
Q 037574 275 VLLVLDDVWWNACPRYWE-QLMYSLKS-GSEGSRILVTRRGE 314 (961)
Q Consensus 275 ~LlVlDdvw~~~~~~~~~-~l~~~l~~-~~~gs~ilvTtR~~ 314 (961)
-+||+||+........+. .+...+.. ...++ +|+||...
T Consensus 161 dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 161 PLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 589999995111112222 23333332 12344 88888643
No 212
>PTZ00494 tuzin-like protein; Provisional
Probab=96.79 E-value=0.093 Score=56.98 Aligned_cols=173 Identities=12% Similarity=0.049 Sum_probs=109.5
Q ss_pred cCCCCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCH
Q 037574 159 AIDPLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDE 238 (961)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 238 (961)
...+..+|.|+++-..+.+.|...+. ..++++.+.|.-|.||++|.+.....+.+ ..++|.+...
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld~-------aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~--- 431 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMAP-------SHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGT--- 431 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhccC-------CCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCC---
Confidence 34566799999998888888877654 67899999999999999999999874333 3566877644
Q ss_pred HHHHHHHHHHhcCCCCCc--ccHHHHHHHH---HHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCC
Q 037574 239 IRVAKAILESLKGSVSSQ--VEMETVLQYI---NEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRG 313 (961)
Q Consensus 239 ~~~~~~il~~l~~~~~~~--~~~~~~~~~l---~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 313 (961)
++-++.++++++.+..+. +-++=+.+.. +....++.-+||+-==..++-...+.... .|.....-|+|++-.--
T Consensus 432 EDtLrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVpl 510 (664)
T PTZ00494 432 EDTLRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPM 510 (664)
T ss_pred cchHHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechH
Confidence 456788999998765332 1122222222 22345666777764221011112333332 34444567788886554
Q ss_pred CcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHH
Q 037574 314 EKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIA 354 (961)
Q Consensus 314 ~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 354 (961)
+.+....... .+...|.+.+++.++|.++-++..
T Consensus 511 ESLT~~n~~L-------PRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 511 KALTPLNVSS-------RRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hhhchhhccC-------ccceeEecCCcCHHHHHHHHhccc
Confidence 4433222221 233788999999999999877653
No 213
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.79 E-value=0.062 Score=58.77 Aligned_cols=218 Identities=13% Similarity=0.178 Sum_probs=125.4
Q ss_pred chHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHH-HHHhCChhhhccCceeEEEEeCC---CCCHHHHHH
Q 037574 168 RNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALA-RQVFDDSDVKANFDKRIWVSASC---PRDEIRVAK 243 (961)
Q Consensus 168 r~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~~wv~~s~---~~~~~~~~~ 243 (961)
|.+..++|..||... .-..|.|.|+-|+||+.|+ .++.++.+. +..+.+.+ ..+-..+++
T Consensus 1 R~e~~~~L~~wL~e~----------~~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~ 64 (431)
T PF10443_consen 1 RKEAIEQLKSWLNEN----------PNTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIK 64 (431)
T ss_pred CchHHHHHHHHHhcC----------CCeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHH
Confidence 567788999999873 3468999999999999999 788775222 44444332 223444555
Q ss_pred HHHHHhc-----------------------CCCCC-cccHH-HH-------HHHHHH-------------------Hh--
Q 037574 244 AILESLK-----------------------GSVSS-QVEME-TV-------LQYINE-------------------FV-- 270 (961)
Q Consensus 244 ~il~~l~-----------------------~~~~~-~~~~~-~~-------~~~l~~-------------------~l-- 270 (961)
.++.++| +.... ..+.+ ++ ...|++ +|
T Consensus 65 ~lA~qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~ 144 (431)
T PF10443_consen 65 NLASQVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEA 144 (431)
T ss_pred HHHHhcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhh
Confidence 5555543 11111 11111 11 111221 11
Q ss_pred -cCCceEEEeecccCCC--ChhhHHHHHHhcc--CCCCCcEEEEecCCCcccccccccccccCCCCCcceeecCCCChHH
Q 037574 271 -QGKKVLLVLDDVWWNA--CPRYWEQLMYSLK--SGSEGSRILVTRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKE 345 (961)
Q Consensus 271 -~~kr~LlVlDdvw~~~--~~~~~~~l~~~l~--~~~~gs~ilvTtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~ 345 (961)
..+|-+||+|+.-... +...|+.+..--. -..+-.+||++|-+........... ....+..+.|.-.+.+.
T Consensus 145 hPe~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaL----Pn~vf~tI~L~Das~~~ 220 (431)
T PF10443_consen 145 HPERRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKAL----PNRVFKTISLSDASPES 220 (431)
T ss_pred CCccCCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhC----CCCceeEEeecCCCHHH
Confidence 1236799999994211 1223333332111 1235568999988777666544321 11244789999999999
Q ss_pred HHHHHHHHHcCCCCC------------CCc----cchHHHHHHHHHhcCCchHHHHHHHhhccCCCCHH-HHHHHhh
Q 037574 346 CRSLFRQIAFDGRSS------------DDR----EKFEPIGRLVVGKCKGLPFAVKILGSLLRFKTSIE-EWQSVLD 405 (961)
Q Consensus 346 ~~~Lf~~~~~~~~~~------------~~~----~~l~~~~~~I~~~c~G~PLai~~~~~~l~~~~~~~-~w~~~l~ 405 (961)
|.++...+.-..... .+. .....-....++.+||=-.=+..+++.++...++. .-.++.+
T Consensus 221 Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 221 AKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred HHHHHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 999998886432110 000 12333345677888998888888888888775543 3334433
No 214
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.77 E-value=0.0076 Score=68.12 Aligned_cols=187 Identities=15% Similarity=0.176 Sum_probs=109.5
Q ss_pred ccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHH
Q 037574 164 EFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAK 243 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 243 (961)
+++|.+.-...|...+... .-...-...|+-|+||||+|+-++.- + .|.-| ....++..-..-+
T Consensus 17 evvGQe~v~~~L~nal~~~---------ri~hAYlfsG~RGvGKTt~Ari~Aka--l----NC~~~-~~~ePC~~C~~Ck 80 (515)
T COG2812 17 DVVGQEHVVKTLSNALENG---------RIAHAYLFSGPRGVGKTTIARILAKA--L----NCENG-PTAEPCGKCISCK 80 (515)
T ss_pred HhcccHHHHHHHHHHHHhC---------cchhhhhhcCCCCcCchhHHHHHHHH--h----cCCCC-CCCCcchhhhhhH
Confidence 5799999999998888763 22455678999999999999988762 1 11111 1112222222222
Q ss_pred HHHHHhcCC-----CCCcccHHHHHHHHHHHh----cCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCC
Q 037574 244 AILESLKGS-----VSSQVEMETVLQYINEFV----QGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGE 314 (961)
Q Consensus 244 ~il~~l~~~-----~~~~~~~~~~~~~l~~~l----~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 314 (961)
+|-..-..+ ......++++.+.+.+.. +++-=+.|+|.|+ ..+...|..+...+......-+.|..|.+.
T Consensus 81 ~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvH-MLS~~afNALLKTLEEPP~hV~FIlATTe~ 159 (515)
T COG2812 81 EINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVH-MLSKQAFNALLKTLEEPPSHVKFILATTEP 159 (515)
T ss_pred hhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHH-hhhHHHHHHHhcccccCccCeEEEEecCCc
Confidence 222220000 001122333322222221 4566699999997 667788888888887655555555555444
Q ss_pred -cccc-cccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCch
Q 037574 315 -KNGT-NMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLP 381 (961)
Q Consensus 315 -~v~~-~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~P 381 (961)
.+.. ..+.. +.+.++.++.++-...+...+....... ..+....|++..+|..
T Consensus 160 ~Kip~TIlSRc----------q~f~fkri~~~~I~~~L~~i~~~E~I~~----e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 160 QKIPNTILSRC----------QRFDFKRLDLEEIAKHLAAILDKEGINI----EEDALSLIARAAEGSL 214 (515)
T ss_pred CcCchhhhhcc----------ccccccCCCHHHHHHHHHHHHHhcCCcc----CHHHHHHHHHHcCCCh
Confidence 4433 23333 8899999999999998888775444322 2334555666666644
No 215
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.73 E-value=0.068 Score=61.23 Aligned_cols=211 Identities=17% Similarity=0.158 Sum_probs=118.2
Q ss_pred ccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChh------hhccCceeEEEEeCCCCC
Q 037574 164 EFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSD------VKANFDKRIWVSASCPRD 237 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~------~~~~F~~~~wv~~s~~~~ 237 (961)
.+-+|+.+..+|.+.+...-+.+ +.-+.+-|.|.+|+|||..+..|.+.-. --..| ..+.|+.-.-..
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~-----~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f-~yveINgm~l~~ 470 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQ-----GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKF-DYVEINGLRLAS 470 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCC-----CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCc-cEEEEcceeecC
Confidence 45689999999998887643321 3345899999999999999999988422 11234 344566556667
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh-----cCCceEEEeecccCCCChhhHHHHHHhccC-CCCCcEEEEec
Q 037574 238 EIRVAKAILESLKGSVSSQVEMETVLQYINEFV-----QGKKVLLVLDDVWWNACPRYWEQLMYSLKS-GSEGSRILVTR 311 (961)
Q Consensus 238 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~-~~~gs~ilvTt 311 (961)
+.+++..|..++.+... ......+.+..+. +.+..+|++|++. .--...-+.+-..|.+ ..++||++|.+
T Consensus 471 ~~~~Y~~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD-~Lvtr~QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 471 PREIYEKIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELD-ILVTRSQDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHHHHHHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHH-HHhcccHHHHHHHhcCCcCCCCceEEEE
Confidence 99999999999987642 2233333344433 2456788888873 1001111223334444 35678876654
Q ss_pred CCCcccccccccc-ccc---CCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHH
Q 037574 312 RGEKNGTNMTEIG-LGE---KDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKIL 387 (961)
Q Consensus 312 R~~~v~~~~~~~~-~~~---~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~ 387 (961)
||+.|...- +.. ...-....+.+.|-+.++-.++...+..+. ..-.....+-+|++|+.--|-.-.|+.+.
T Consensus 547 ----IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic 621 (767)
T KOG1514|consen 547 ----IANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDIC 621 (767)
T ss_pred ----ecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHH
Confidence 222221110 000 000112567777777777777776654332 11122333344555555555444444444
Q ss_pred Hh
Q 037574 388 GS 389 (961)
Q Consensus 388 ~~ 389 (961)
-+
T Consensus 622 ~R 623 (767)
T KOG1514|consen 622 RR 623 (767)
T ss_pred HH
Confidence 33
No 216
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.72 E-value=0.0043 Score=61.22 Aligned_cols=38 Identities=34% Similarity=0.732 Sum_probs=30.0
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEE
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVS 231 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 231 (961)
....+|.+.|+.|+||||+|+.+++ +....+...+++.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~~ 42 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYLD 42 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 3456999999999999999999998 4555566666653
No 217
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.71 E-value=0.0027 Score=66.12 Aligned_cols=73 Identities=21% Similarity=0.270 Sum_probs=44.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCC
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGK 273 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 273 (961)
..-+.++|.+|+|||.||..+.++.- +.. -.+.+++ ..+++.++....... .....|.+.+. +
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g-~sv~f~~------~~el~~~Lk~~~~~~--------~~~~~l~~~l~-~ 167 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELL-KAG-ISVLFIT------APDLLSKLKAAFDEG--------RLEEKLLRELK-K 167 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH-HcC-CeEEEEE------HHHHHHHHHHHHhcC--------chHHHHHHHhh-c
Confidence 34689999999999999999999533 222 3455665 345555555554321 11222333222 2
Q ss_pred ceEEEeeccc
Q 037574 274 KVLLVLDDVW 283 (961)
Q Consensus 274 r~LlVlDdvw 283 (961)
-=||||||+-
T Consensus 168 ~dlLIiDDlG 177 (254)
T COG1484 168 VDLLIIDDIG 177 (254)
T ss_pred CCEEEEeccc
Confidence 3489999995
No 218
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.71 E-value=0.0098 Score=56.30 Aligned_cols=101 Identities=15% Similarity=0.091 Sum_probs=61.2
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEe----CCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSA----SCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEF 269 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~----s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 269 (961)
-.+++|+|..|.|||||++.+..... ...+.+|+.- +-.+. -+.-+...-.+.+.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~~i~~~~~------------------lS~G~~~rv~lara 84 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTVKIGYFEQ------------------LSGGEKMRLALAKL 84 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeEEEEEEcc------------------CCHHHHHHHHHHHH
Confidence 36899999999999999999987422 2234444321 00000 11112222335556
Q ss_pred hcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCccc
Q 037574 270 VQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNG 317 (961)
Q Consensus 270 l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 317 (961)
+..++-++++|+--..-|......+...+... +..||++|.+....
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~ 130 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFL 130 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH
Confidence 66778899999886455666666666666543 24677777665543
No 219
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.71 E-value=4.7e-05 Score=85.56 Aligned_cols=131 Identities=23% Similarity=0.266 Sum_probs=94.3
Q ss_pred cCCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhc
Q 037574 546 SHEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIK 625 (961)
Q Consensus 546 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~ 625 (961)
.+..+..+++..|.+ ..+..++.-++.|++|++++|. +. --..+..|++|+.|||++|. +..+|.--.
T Consensus 162 ~Wn~L~~a~fsyN~L-~~mD~SLqll~ale~LnLshNk--~~---~v~~Lr~l~~LkhLDlsyN~------L~~vp~l~~ 229 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRL-VLMDESLQLLPALESLNLSHNK--FT---KVDNLRRLPKLKHLDLSYNC------LRHVPQLSM 229 (1096)
T ss_pred hhhhHhhhhcchhhH-HhHHHHHHHHHHhhhhccchhh--hh---hhHHHHhcccccccccccch------hccccccch
Confidence 345666777777776 3445677778889999999887 21 22357889999999999984 777765322
Q ss_pred CCCCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccc--cccccCCCCcEEEeCCcccccC
Q 037574 626 RLIHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLP--QGMGKLINLRHVVNVGTPLSYM 691 (961)
Q Consensus 626 ~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP--~~i~~L~~L~~L~l~~~~l~~~ 691 (961)
.=-+|..|.|++|. ++.|-. |.+|.+|+.||+++|- +.... .-++.|..|+.|.+.+|.+..-
T Consensus 230 ~gc~L~~L~lrnN~-l~tL~g-ie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 230 VGCKLQLLNLRNNA-LTTLRG-IENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred hhhhheeeeecccH-HHhhhh-HHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 22249999999998 888754 8899999999999876 44432 2367788899999988876543
No 220
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.70 E-value=0.015 Score=57.45 Aligned_cols=120 Identities=16% Similarity=0.105 Sum_probs=69.6
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEE---eCCCCCHHHH------HHHHHHHhcCCC------CCccc
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVS---ASCPRDEIRV------AKAILESLKGSV------SSQVE 258 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---~s~~~~~~~~------~~~il~~l~~~~------~~~~~ 258 (961)
-.+++|+|..|.|||||++.++... ....+.+++. +.. .+.... .-++++.++... ..-+.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 4689999999999999999998732 2234444442 221 122121 112344443321 11122
Q ss_pred HHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCC-C-CcEEEEecCCCccc
Q 037574 259 METVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGS-E-GSRILVTRRGEKNG 317 (961)
Q Consensus 259 ~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~-~-gs~ilvTtR~~~v~ 317 (961)
-+...-.+.+.+...+-++++|+--..-|....+.+...+.... . |..||++|.+....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 22333345566677888999999864455666666666665422 2 66788888766543
No 221
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.69 E-value=0.0097 Score=61.06 Aligned_cols=44 Identities=20% Similarity=0.210 Sum_probs=32.7
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRD 237 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 237 (961)
..-.++.|.|.+|+||||+|.+++.. ....=..++|++....+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 44578999999999999999999873 322334677887655553
No 222
>PRK04296 thymidine kinase; Provisional
Probab=96.68 E-value=0.0032 Score=62.79 Aligned_cols=114 Identities=14% Similarity=0.030 Sum_probs=63.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCC--cccHHHHHHHHHHHhcC
Q 037574 195 PVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSS--QVEMETVLQYINEFVQG 272 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~l~~~l~~ 272 (961)
.++.|+|..|.||||+|..+... ...+-..++.+. ..++.+.....++++++..... ....+++.+.+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 47889999999999999999883 333333333332 1112222233455555432221 2234455555555 334
Q ss_pred CceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCcc
Q 037574 273 KKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKN 316 (961)
Q Consensus 273 kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v 316 (961)
+.-+||+|.+. --+.+....+...+ ...|..||+|.++.+.
T Consensus 78 ~~dvviIDEaq-~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 78 KIDCVLIDEAQ-FLDKEQVVQLAEVL--DDLGIPVICYGLDTDF 118 (190)
T ss_pred CCCEEEEEccc-cCCHHHHHHHHHHH--HHcCCeEEEEecCccc
Confidence 55589999995 22223233333332 2357789999887553
No 223
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.67 E-value=0.011 Score=73.01 Aligned_cols=129 Identities=19% Similarity=0.249 Sum_probs=71.7
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVA 242 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 242 (961)
..++|.+..++.+...+.....+-. .+.....++.++|+.|+|||+||+.+.+ ..-..-...+-++.+...+...+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~-~~~~p~~~~lf~Gp~GvGKt~lA~~LA~--~l~~~~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLK-NPNRPIASFLFSGPTGVGKTELTKALAS--YFFGSEDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhccc-CCCCCceEEEEECCCCCcHHHHHHHHHH--HhcCCccceEEEEchhccccccHH
Confidence 4588999999999888763221000 0012235677899999999999999987 221111233444444432221111
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhcCCc-eEEEeecccCCCChhhHHHHHHhccCC
Q 037574 243 KAILESLKGSVSSQVEMETVLQYINEFVQGKK-VLLVLDDVWWNACPRYWEQLMYSLKSG 301 (961)
Q Consensus 243 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr-~LlVlDdvw~~~~~~~~~~l~~~l~~~ 301 (961)
.+.+..+.....++ ...+.+.++.++ .+++||++. ..+++.+..+...+..+
T Consensus 586 -----~l~g~~~gyvg~~~-~~~l~~~~~~~p~~VvllDeie-ka~~~v~~~Llq~le~g 638 (821)
T CHL00095 586 -----KLIGSPPGYVGYNE-GGQLTEAVRKKPYTVVLFDEIE-KAHPDIFNLLLQILDDG 638 (821)
T ss_pred -----HhcCCCCcccCcCc-cchHHHHHHhCCCeEEEECChh-hCCHHHHHHHHHHhccC
Confidence 11111111111111 112344444454 588899996 66788888888887754
No 224
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.66 E-value=0.00078 Score=63.57 Aligned_cols=89 Identities=26% Similarity=0.343 Sum_probs=49.7
Q ss_pred EEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceE
Q 037574 197 IWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVL 276 (961)
Q Consensus 197 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~L 276 (961)
|.++|++|+|||+||+.+++ .... ...-+.++...+..+++...--+ .... . .....+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~~~---~~~~i~~~~~~~~~dl~g~~~~~-~~~~-~-~~~~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LLGR---PVIRINCSSDTTEEDLIGSYDPS-NGQF-E-FKDGPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HHTC---EEEEEE-TTTSTHHHHHCEEET--TTTT-C-EEE-CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHH--Hhhc---ceEEEEeccccccccceeeeeec-cccc-c-cccccccccc-----cceeE
Confidence 67999999999999999998 3321 22335677777777655332211 0000 0 0000000001 17899
Q ss_pred EEeecccCCCChhhHHHHHHhcc
Q 037574 277 LVLDDVWWNACPRYWEQLMYSLK 299 (961)
Q Consensus 277 lVlDdvw~~~~~~~~~~l~~~l~ 299 (961)
+|||++. ..+.+.+..+...+.
T Consensus 69 l~lDEin-~a~~~v~~~L~~ll~ 90 (139)
T PF07728_consen 69 LVLDEIN-RAPPEVLESLLSLLE 90 (139)
T ss_dssp EEESSCG-G--HHHHHTTHHHHS
T ss_pred EEECCcc-cCCHHHHHHHHHHHh
Confidence 9999995 334555666666554
No 225
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.66 E-value=0.0085 Score=69.76 Aligned_cols=44 Identities=36% Similarity=0.535 Sum_probs=35.9
Q ss_pred ccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCC
Q 037574 164 EFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
+++|.+..++.+...+.. ....-+.|+|..|+|||++|+.+++.
T Consensus 66 ~iiGqs~~i~~l~~al~~----------~~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCG----------PNPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HeeCcHHHHHHHHHHHhC----------CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 589999999988877654 23345689999999999999999763
No 226
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.63 E-value=0.00042 Score=61.95 Aligned_cols=87 Identities=25% Similarity=0.383 Sum_probs=42.7
Q ss_pred cCCcccEEEccCCChhhhhhhcccchhhc-CCCCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccccccccC
Q 037574 597 QLTCLRTLELSNHDNVLCKVIKKVPKQIK-RLIHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQGMGKL 675 (961)
Q Consensus 597 ~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~-~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L 675 (961)
+...|...+|++| . ++.+|..+. +++.+..|+|+.|. +.++|..+..++.|+.|+++.|. +...|.-|..|
T Consensus 51 ~~~el~~i~ls~N-----~-fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L 122 (177)
T KOG4579|consen 51 KGYELTKISLSDN-----G-FKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPL 122 (177)
T ss_pred CCceEEEEecccc-----h-hhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCc-cccchHHHHHH
Confidence 3344444555554 2 444444432 23345555555554 55555555555555555555544 44555555555
Q ss_pred CCCcEEEeCCcccccC
Q 037574 676 INLRHVVNVGTPLSYM 691 (961)
Q Consensus 676 ~~L~~L~l~~~~l~~~ 691 (961)
.+|-.|+...|....+
T Consensus 123 ~~l~~Lds~~na~~ei 138 (177)
T KOG4579|consen 123 IKLDMLDSPENARAEI 138 (177)
T ss_pred HhHHHhcCCCCccccC
Confidence 5555555544443333
No 227
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.62 E-value=0.14 Score=57.99 Aligned_cols=89 Identities=17% Similarity=0.166 Sum_probs=46.8
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCC-CHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhc
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPR-DEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQ 271 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 271 (961)
...+|+|+|.+|+||||++..+......+.....+..++..... ...+.++...+.++.......+...+...+.+ +.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~-l~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER-LR 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH-hc
Confidence 35799999999999999999887632211112334455543211 12222333333333222222333444444443 33
Q ss_pred CCceEEEeeccc
Q 037574 272 GKKVLLVLDDVW 283 (961)
Q Consensus 272 ~kr~LlVlDdvw 283 (961)
+ .=+|++|..-
T Consensus 428 ~-~DLVLIDTaG 438 (559)
T PRK12727 428 D-YKLVLIDTAG 438 (559)
T ss_pred c-CCEEEecCCC
Confidence 3 4578888873
No 228
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.61 E-value=0.0023 Score=68.71 Aligned_cols=50 Identities=18% Similarity=0.365 Sum_probs=41.9
Q ss_pred ccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCC
Q 037574 164 EFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
+++|.++.++++++++.....+. ....+++.++|++|+||||||+.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~----~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGL----EERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcC----CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 69999999999999998754321 145689999999999999999999884
No 229
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.61 E-value=0.012 Score=60.79 Aligned_cols=88 Identities=23% Similarity=0.270 Sum_probs=55.4
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccC------ceeEEEEeCCCCCHHHHHHHHHHHhcCCC---------CCc
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANF------DKRIWVSASCPRDEIRVAKAILESLKGSV---------SSQ 256 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~~s~~~~~~~~~~~il~~l~~~~---------~~~ 256 (961)
..-.++.|+|.+|+|||+||.+++... ...- ..++|++....++..++ ..+.+...... ...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERL-VQLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHH-HHHHHHhccchhhhhccEEEEeC
Confidence 456799999999999999999997632 2222 56789998777776544 34444432211 111
Q ss_pred ccHHHHHHHHHHHhc----CCceEEEeecc
Q 037574 257 VEMETVLQYINEFVQ----GKKVLLVLDDV 282 (961)
Q Consensus 257 ~~~~~~~~~l~~~l~----~kr~LlVlDdv 282 (961)
.+.+++...+.+... .+.-++|+|.+
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsi 123 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSV 123 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence 344555555555432 34558999988
No 230
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.61 E-value=0.007 Score=69.05 Aligned_cols=90 Identities=21% Similarity=0.327 Sum_probs=62.1
Q ss_pred CCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh
Q 037574 191 KPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFV 270 (961)
Q Consensus 191 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 270 (961)
++..+++.+.|++|+||||||.-|++++ .| .++=|++|+..+...+-..|...+....... .
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~s~l~-------------a 384 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNHSVLD-------------A 384 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhccccc-------------c
Confidence 4667999999999999999999998843 23 3667889988888777766666654332110 1
Q ss_pred cCCceEEEeecccCCCChhhHHHHHHhcc
Q 037574 271 QGKKVLLVLDDVWWNACPRYWEQLMYSLK 299 (961)
Q Consensus 271 ~~kr~LlVlDdvw~~~~~~~~~~l~~~l~ 299 (961)
.+++..||+|.+. .......+.+...+.
T Consensus 385 dsrP~CLViDEID-Ga~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 385 DSRPVCLVIDEID-GAPRAAVDVILSLVK 412 (877)
T ss_pred CCCcceEEEeccc-CCcHHHHHHHHHHHH
Confidence 2688899999996 223333445554443
No 231
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.60 E-value=0.013 Score=57.82 Aligned_cols=119 Identities=14% Similarity=0.056 Sum_probs=64.1
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcC--C-------------CCCccc
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKG--S-------------VSSQVE 258 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~--~-------------~~~~~~ 258 (961)
-.+++|+|..|.|||||++.+..-.. .-.+.+++.-. +.......+-..++- + ...-..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 36899999999999999999987421 11223332210 111100011111100 0 000111
Q ss_pred HHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCcccc
Q 037574 259 METVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNGT 318 (961)
Q Consensus 259 ~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 318 (961)
-+...-.+.+.+-.++-+++||+....-|....+.+...+.....+..||++|.+.....
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 122233355566677889999998644555555556555544334677888887766544
No 232
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.59 E-value=0.019 Score=63.18 Aligned_cols=148 Identities=16% Similarity=0.157 Sum_probs=86.3
Q ss_pred ccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhc-------------------cC
Q 037574 164 EFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKA-------------------NF 224 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F 224 (961)
.++|-+....++..+..... .....+.++|++|+||||+|..+.+.---.. ..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~--------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG--------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNH 73 (325)
T ss_pred CcccchhHHHHHHHHHHhcC--------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCC
Confidence 35677777777877777432 2234599999999999999999987311000 11
Q ss_pred ceeEEEEeCCCCC---HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC
Q 037574 225 DKRIWVSASCPRD---EIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG 301 (961)
Q Consensus 225 ~~~~wv~~s~~~~---~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~ 301 (961)
+.+..+..+.... ..+..+++.+....... .++.-++++|++. ..+.+.-..+...+...
T Consensus 74 ~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead-~mt~~A~nallk~lEep 136 (325)
T COG0470 74 PDFLELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEAD-KLTEDAANALLKTLEEP 136 (325)
T ss_pred CceEEecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHH-HHhHHHHHHHHHHhccC
Confidence 3444455444443 23333344333322210 3567899999995 44445555666666666
Q ss_pred CCCcEEEEecCCC-cccccccccccccCCCCCcceeecCCCChHH
Q 037574 302 SEGSRILVTRRGE-KNGTNMTEIGLGEKDGTNMTEIGLGELSAKE 345 (961)
Q Consensus 302 ~~gs~ilvTtR~~-~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~ 345 (961)
...+.+|++|... .+...+. ++...+.+.+.+..+
T Consensus 137 ~~~~~~il~~n~~~~il~tI~---------SRc~~i~f~~~~~~~ 172 (325)
T COG0470 137 PKNTRFILITNDPSKILPTIR---------SRCQRIRFKPPSRLE 172 (325)
T ss_pred CCCeEEEEEcCChhhccchhh---------hcceeeecCCchHHH
Confidence 7778888888633 3333221 223677777733333
No 233
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.55 E-value=0.011 Score=61.82 Aligned_cols=57 Identities=23% Similarity=0.250 Sum_probs=41.3
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhc----cCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKA----NFDKRIWVSASCPRDEIRVAKAILESLK 250 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~il~~l~ 250 (961)
.-.+.=|+|.+|+|||.|+.+++-...+.. .=..++|++....|...++. +|++...
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 457999999999999999988865322221 12369999999989887764 5777654
No 234
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.55 E-value=0.012 Score=63.70 Aligned_cols=101 Identities=17% Similarity=0.263 Sum_probs=54.5
Q ss_pred cEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCc
Q 037574 195 PVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKK 274 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 274 (961)
.-+.++|..|+|||+||..+++. ....-..++++++. +++..+...-... ..+.... + +.+.. -
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~~------~l~~~l~~~~~~~---~~~~~~~---~-~~l~~-~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTAD------ELIEILREIRFNN---DKELEEV---Y-DLLIN-C 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEHH------HHHHHHHHHHhcc---chhHHHH---H-HHhcc-C
Confidence 56999999999999999999984 32222356666643 3333332211111 1111111 2 22222 2
Q ss_pred eEEEeecccCCCChhhH--HHHHHhccCC-CCCcEEEEecC
Q 037574 275 VLLVLDDVWWNACPRYW--EQLMYSLKSG-SEGSRILVTRR 312 (961)
Q Consensus 275 ~LlVlDdvw~~~~~~~~--~~l~~~l~~~-~~gs~ilvTtR 312 (961)
=|||+||+. .+....| +.+...+... ..+-.+||||.
T Consensus 248 DLLIIDDlG-~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSN 287 (329)
T PRK06835 248 DLLIIDDLG-TEKITEFSKSELFNLINKRLLRQKKMIISTN 287 (329)
T ss_pred CEEEEeccC-CCCCCHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 489999995 3322333 2344444322 23456888886
No 235
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.55 E-value=0.013 Score=57.45 Aligned_cols=64 Identities=19% Similarity=0.253 Sum_probs=44.5
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccC-ceeEEEEeCCCCC
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANF-DKRIWVSASCPRD 237 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~ 237 (961)
.++||-++.++++.-.-.+ ++.+-+.|.||+|+||||=+..+++.. ....+ +.+.-.++|+...
T Consensus 27 ~dIVGNe~tv~rl~via~~----------gnmP~liisGpPG~GKTTsi~~LAr~L-LG~~~ke~vLELNASdeRG 91 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE----------GNMPNLIISGPPGTGKTTSILCLAREL-LGDSYKEAVLELNASDERG 91 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc----------CCCCceEeeCCCCCchhhHHHHHHHHH-hChhhhhHhhhccCccccc
Confidence 4689999999888766554 667889999999999999887777631 12122 3444455555443
No 236
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.54 E-value=0.015 Score=60.53 Aligned_cols=90 Identities=19% Similarity=0.214 Sum_probs=55.3
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhcc----CceeEEEEeCCCCCHHHHHHHHHHHhcCCC------------CC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKAN----FDKRIWVSASCPRDEIRVAKAILESLKGSV------------SS 255 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~~~~~~il~~l~~~~------------~~ 255 (961)
..-.++.|+|.+|+|||+||.+++........ -..++|++....++..++ .++++..+... .+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCC
Confidence 44589999999999999999999753222221 357899998887765444 34444433221 11
Q ss_pred cccHHHHHHHHHHHhc-C-CceEEEeecc
Q 037574 256 QVEMETVLQYINEFVQ-G-KKVLLVLDDV 282 (961)
Q Consensus 256 ~~~~~~~~~~l~~~l~-~-kr~LlVlDdv 282 (961)
..+..+....+.+.+. . +.-+||+|.+
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSi 124 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSV 124 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCc
Confidence 1122333344444443 3 5668888888
No 237
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.48 E-value=0.018 Score=59.96 Aligned_cols=179 Identities=22% Similarity=0.233 Sum_probs=97.3
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCC-hhhhccCceeEEEEeCCCCCH-HH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDD-SDVKANFDKRIWVSASCPRDE-IR 240 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~wv~~s~~~~~-~~ 240 (961)
..++|-.++..++-.++....-. ++..-|.|+|+.|+|||+|...+..+ .++..+| .-|........ +-
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~------gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~ 94 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILH------GESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKI 94 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHh------cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHH
Confidence 35889999988888887753322 34456889999999999999888876 1233333 33333333222 22
Q ss_pred HHHHHHHHhc----CCCCCcccHHHHHHHHHHHhc------CCceEEEeecccCCCChhhHHHHHH-hc---c-CCCCCc
Q 037574 241 VAKAILESLK----GSVSSQVEMETVLQYINEFVQ------GKKVLLVLDDVWWNACPRYWEQLMY-SL---K-SGSEGS 305 (961)
Q Consensus 241 ~~~~il~~l~----~~~~~~~~~~~~~~~l~~~l~------~kr~LlVlDdvw~~~~~~~~~~l~~-~l---~-~~~~gs 305 (961)
.++.|.+|+. .......+..+...++-..|+ +-+++.|+|.++ ......-..+.. .| . ...+-|
T Consensus 95 al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfD-lf~~h~rQtllYnlfDisqs~r~Pic 173 (408)
T KOG2228|consen 95 ALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFD-LFAPHSRQTLLYNLFDISQSARAPIC 173 (408)
T ss_pred HHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhh-ccccchhhHHHHHHHHHHhhcCCCeE
Confidence 4455555543 222222233334444444443 235788888774 222222222222 12 1 234667
Q ss_pred EEEEecCCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHH
Q 037574 306 RILVTRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIA 354 (961)
Q Consensus 306 ~ilvTtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 354 (961)
-|-+|||-......=... +.+-.+..++-+++++-++...++++..
T Consensus 174 iig~Ttrld~lE~LEKRV---KSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 174 IIGVTTRLDILELLEKRV---KSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred EEEeeccccHHHHHHHHH---HhhcccceeeccCCCChHHHHHHHHHHh
Confidence 788899854321110000 0001122466777888888888888765
No 238
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.48 E-value=0.038 Score=67.63 Aligned_cols=189 Identities=15% Similarity=0.140 Sum_probs=94.1
Q ss_pred CccccchHHHHHHHHHHhCCCCCCc---CCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEE---SGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEI 239 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 239 (961)
.++.|.+..++++.+++...-...+ .-+-...+-+.++|++|+|||+||+.+++. ....| +.++.+
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~---i~i~~~------ 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF---ISINGP------ 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE---EEEecH------
Confidence 3578999999988887643211000 000023456889999999999999999883 33222 222211
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCC----------ChhhHHHHHHhccCC-CCCcEEE
Q 037574 240 RVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNA----------CPRYWEQLMYSLKSG-SEGSRIL 308 (961)
Q Consensus 240 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~----------~~~~~~~l~~~l~~~-~~gs~il 308 (961)
.+ ..... ....+.+...+.......+.+|++|++..-. +......+...+... ..+..++
T Consensus 247 ~i----~~~~~-----g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~viv 317 (733)
T TIGR01243 247 EI----MSKYY-----GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIV 317 (733)
T ss_pred HH----hcccc-----cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEE
Confidence 11 11110 1111223333333345667899999983100 011223344333322 2333444
Q ss_pred E-ecCCCc-ccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchH
Q 037574 309 V-TRRGEK-NGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPF 382 (961)
Q Consensus 309 v-TtR~~~-v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PL 382 (961)
| ||.... +...+... +.-...+.+...+.++-.++++...-.... .... ....+++.+.|.--
T Consensus 318 I~atn~~~~ld~al~r~------gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-~~d~----~l~~la~~t~G~~g 382 (733)
T TIGR01243 318 IGATNRPDALDPALRRP------GRFDREIVIRVPDKRARKEILKVHTRNMPL-AEDV----DLDKLAEVTHGFVG 382 (733)
T ss_pred EeecCChhhcCHHHhCc------hhccEEEEeCCcCHHHHHHHHHHHhcCCCC-cccc----CHHHHHHhCCCCCH
Confidence 4 454332 21111110 001146778888888888888865422111 1111 24557777777643
No 239
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.47 E-value=0.02 Score=55.42 Aligned_cols=39 Identities=28% Similarity=0.370 Sum_probs=29.2
Q ss_pred EEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCC
Q 037574 196 VIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPR 236 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~ 236 (961)
++.|+|.+|+||||++..+... ....-..++|++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcch
Confidence 3689999999999999999884 33333567788766554
No 240
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.47 E-value=0.023 Score=54.33 Aligned_cols=126 Identities=16% Similarity=0.187 Sum_probs=76.0
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEE---eC------------------CC----------------
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVS---AS------------------CP---------------- 235 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---~s------------------~~---------------- 235 (961)
.-..+.|+|+.|.||||+.+.+|..++.. .+.+|+. ++ |+
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 34689999999999999999999864432 2334432 11 00
Q ss_pred -----CCH---HHHHHHHHHHhcCCC-----C-CcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccC-
Q 037574 236 -----RDE---IRVAKAILESLKGSV-----S-SQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKS- 300 (961)
Q Consensus 236 -----~~~---~~~~~~il~~l~~~~-----~-~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~- 300 (961)
... .+-..+.++.++... + +-+.-++-.-.|.+.+-+++-+|+=|.--.+-|++.-..++..|..
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei 183 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI 183 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH
Confidence 011 222223333333221 1 1123344445577778889999999976544455544445555554
Q ss_pred CCCCcEEEEecCCCccccccc
Q 037574 301 GSEGSRILVTRRGEKNGTNMT 321 (961)
Q Consensus 301 ~~~gs~ilvTtR~~~v~~~~~ 321 (961)
+..|+.||++|-+..+.+.+.
T Consensus 184 nr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 184 NRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred hhcCcEEEEEeccHHHHHhcc
Confidence 567999999999988766554
No 241
>PRK04132 replication factor C small subunit; Provisional
Probab=96.46 E-value=0.056 Score=65.26 Aligned_cols=156 Identities=12% Similarity=0.007 Sum_probs=97.4
Q ss_pred CCCchHHHHHHHHhCChhhhccC-ceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEee
Q 037574 202 KEGIGKTALARQVFDDSDVKANF-DKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLD 280 (961)
Q Consensus 202 ~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlD 280 (961)
+-++||||+|..++++. ....+ ..++-+++|+..... .+++++..+....+. -..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGIN-VIREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 77899999999999841 12223 245667777655444 344444433211100 01245799999
Q ss_pred cccCCCChhhHHHHHHhccCCCCCcEEEEecCCCc-ccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCC
Q 037574 281 DVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEK-NGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRS 359 (961)
Q Consensus 281 dvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~ 359 (961)
++. ..+.+....+...+......+++|++|.+.. +...+. ++...+.+.+++.++....+...+...+.
T Consensus 638 EaD-~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIr---------SRC~~i~F~~ls~~~i~~~L~~I~~~Egi 707 (846)
T PRK04132 638 EAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ---------SRCAIFRFRPLRDEDIAKRLRYIAENEGL 707 (846)
T ss_pred Ccc-cCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHh---------hhceEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 997 5566777888888876555667766655443 322221 22388999999999999888876543221
Q ss_pred CCCccchHHHHHHHHHhcCCchHHHHHH
Q 037574 360 SDDREKFEPIGRLVVGKCKGLPFAVKIL 387 (961)
Q Consensus 360 ~~~~~~l~~~~~~I~~~c~G~PLai~~~ 387 (961)
.. -.+....|++.++|.+-.+..+
T Consensus 708 ~i----~~e~L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 708 EL----TEEGLQAILYIAEGDMRRAINI 731 (846)
T ss_pred CC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 11 1346788999999998544433
No 242
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.46 E-value=0.093 Score=57.61 Aligned_cols=42 Identities=21% Similarity=0.300 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCC
Q 037574 169 NVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 169 ~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
+.-.+.+.+.+..... ....+|+|.|.=|+||||+.+.+.+.
T Consensus 2 ~~~a~~la~~I~~~~~-------~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDS-------DDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred hHHHHHHHHHHhccCC-------CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3445667777776432 45789999999999999999999873
No 243
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.45 E-value=0.041 Score=59.62 Aligned_cols=72 Identities=11% Similarity=0.089 Sum_probs=47.3
Q ss_pred CCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCc-ccccccccccccCCCCCcceeecCCCChHHHHHHH
Q 037574 272 GKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEK-NGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLF 350 (961)
Q Consensus 272 ~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf 350 (961)
+++-++|+|++. .-+...-..+...+.....++.+|++|.+.. +...+.. +...+.+.+++.+++.+.+
T Consensus 112 ~~~kV~iiEp~~-~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~S---------Rc~~~~~~~~~~~~~~~~L 181 (325)
T PRK08699 112 GGLRVILIHPAE-SMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKS---------RCRKMVLPAPSHEEALAYL 181 (325)
T ss_pred CCceEEEEechh-hCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHH---------HhhhhcCCCCCHHHHHHHH
Confidence 444556668885 5566666677777766555666777776654 3333221 2278999999999999888
Q ss_pred HHH
Q 037574 351 RQI 353 (961)
Q Consensus 351 ~~~ 353 (961)
.+.
T Consensus 182 ~~~ 184 (325)
T PRK08699 182 RER 184 (325)
T ss_pred Hhc
Confidence 664
No 244
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.43 E-value=0.016 Score=69.80 Aligned_cols=125 Identities=16% Similarity=0.232 Sum_probs=69.9
Q ss_pred ccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHH
Q 037574 164 EFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAK 243 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 243 (961)
.++|.+..++.+.+.+.....+-. ........+.++|+.|+|||++|+.+... ... ..+.++++...+...
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~-~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~~---~~i~id~se~~~~~~--- 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLG-HEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LGI---ELLRFDMSEYMERHT--- 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcccc-CCCCCcceEEEECCCCCCHHHHHHHHHHH--hCC---CcEEeechhhccccc---
Confidence 478999999988888774211000 00123467899999999999999999773 322 234455543322111
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHhc-CCceEEEeecccCCCChhhHHHHHHhccCC
Q 037574 244 AILESLKGSVSSQVEMETVLQYINEFVQ-GKKVLLVLDDVWWNACPRYWEQLMYSLKSG 301 (961)
Q Consensus 244 ~il~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~ 301 (961)
+..+.+........+ ....+.+.++ ....+|+||++. ..+++.+..+...+..+
T Consensus 530 --~~~LiG~~~gyvg~~-~~g~L~~~v~~~p~sVlllDEie-ka~~~v~~~LLq~ld~G 584 (758)
T PRK11034 530 --VSRLIGAPPGYVGFD-QGGLLTDAVIKHPHAVLLLDEIE-KAHPDVFNLLLQVMDNG 584 (758)
T ss_pred --HHHHcCCCCCccccc-ccchHHHHHHhCCCcEEEeccHh-hhhHHHHHHHHHHHhcC
Confidence 122222211111100 0112333333 334699999996 55677788888777643
No 245
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.032 Score=61.37 Aligned_cols=156 Identities=16% Similarity=0.221 Sum_probs=90.0
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhc
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQ 271 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 271 (961)
.+...+.+.|++|+|||+||..++.+ ..|..+--++. +++ ++ ..+......+.......-+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSp------e~m-------iG--~sEsaKc~~i~k~F~DAYk 596 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISP------EDM-------IG--LSESAKCAHIKKIFEDAYK 596 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeCh------HHc-------cC--ccHHHHHHHHHHHHHHhhc
Confidence 56778889999999999999999773 56765543331 111 00 0112222333444444556
Q ss_pred CCceEEEeeccc-----CCC----ChhhHHHHHHhccCC-CCCcEE--EEecCCCcccccccccccccCCCCCcceeecC
Q 037574 272 GKKVLLVLDDVW-----WNA----CPRYWEQLMYSLKSG-SEGSRI--LVTRRGEKNGTNMTEIGLGEKDGTNMTEIGLG 339 (961)
Q Consensus 272 ~kr~LlVlDdvw-----~~~----~~~~~~~l~~~l~~~-~~gs~i--lvTtR~~~v~~~~~~~~~~~~~~~~~~~~~l~ 339 (961)
..--.||+||+. -.- +......+...+... .+|-|. +-||....+.+.|+-.. .-...|.++
T Consensus 597 S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~------~F~~~i~Vp 670 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD------CFSSTIHVP 670 (744)
T ss_pred CcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH------hhhheeecC
Confidence 677899999992 000 112344455555443 345454 44666666766664330 011578888
Q ss_pred CCCh-HHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhc
Q 037574 340 ELSA-KECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKC 377 (961)
Q Consensus 340 ~L~~-~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c 377 (961)
.++. ++..+.++.... -.+.+...++++.+.+|
T Consensus 671 nl~~~~~~~~vl~~~n~-----fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 671 NLTTGEQLLEVLEELNI-----FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred ccCchHHHHHHHHHccC-----CCcchhHHHHHHHhccc
Confidence 8887 788888777531 12344555667776666
No 246
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.41 E-value=0.028 Score=54.71 Aligned_cols=118 Identities=13% Similarity=0.025 Sum_probs=64.1
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhh-hcc--Cc---eeEEEEeCCCCCH--HHHHHHHHHHhcCCCCCcccHHHHHHH
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDV-KAN--FD---KRIWVSASCPRDE--IRVAKAILESLKGSVSSQVEMETVLQY 265 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~--F~---~~~wv~~s~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~~ 265 (961)
-.+++|+|..|.|||||++.+..-... .+. ++ .+.++ .+.... ..+...+.-. ....-+.-+...-.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~ 101 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLA 101 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc---CCCCCCHHHHHHHH
Confidence 468999999999999999999874221 111 11 12222 222211 1222222110 11122222333344
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCcccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNGT 318 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 318 (961)
+.+.+..++=++++|+--..-|......+...+... +..||++|.+.....
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 556666778899999875344555555565555543 356777777665443
No 247
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.40 E-value=0.026 Score=53.66 Aligned_cols=118 Identities=16% Similarity=0.164 Sum_probs=64.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEe---CCCCCHHHHHHHHHHHh-----cCCC----CC-ccc---
Q 037574 195 PVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSA---SCPRDEIRVAKAILESL-----KGSV----SS-QVE--- 258 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~---s~~~~~~~~~~~il~~l-----~~~~----~~-~~~--- 258 (961)
..|-|++..|.||||+|....-. ...+=..+.+|.. ........+++.+ ..+ +... .+ ..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~r--a~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALR--ALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 47889999999999999888763 2222223334332 2233444443333 111 0000 00 011
Q ss_pred HHHHHHHHHHHhc-CCceEEEeecccC--CCChhhHHHHHHhccCCCCCcEEEEecCCCc
Q 037574 259 METVLQYINEFVQ-GKKVLLVLDDVWW--NACPRYWEQLMYSLKSGSEGSRILVTRRGEK 315 (961)
Q Consensus 259 ~~~~~~~l~~~l~-~kr~LlVlDdvw~--~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 315 (961)
..+..+..++.+. ++-=|||||++-. ....-..+.+...+.....+..||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1122333344443 3445999999920 0122355667777777777889999999865
No 248
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.40 E-value=0.018 Score=56.42 Aligned_cols=103 Identities=14% Similarity=-0.054 Sum_probs=59.0
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEE------eCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVS------ASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYIN 267 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~------~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~ 267 (961)
-.+++|+|..|+|||||++.+..-.. ...+.+++. +.+... -+.-+...-.+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~la 83 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIA 83 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHH
Confidence 35899999999999999999987321 222333321 112111 111122233455
Q ss_pred HHhcCCceEEEeecccCCCChhhHHHHHHhccCC--CCCcEEEEecCCCccc
Q 037574 268 EFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG--SEGSRILVTRRGEKNG 317 (961)
Q Consensus 268 ~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~ 317 (961)
+.+..++-+++||+--..-|......+...+... ..+..||++|.+....
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~ 135 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVL 135 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHH
Confidence 5666778899999885344555555555555432 1225677777665433
No 249
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.39 E-value=0.017 Score=56.69 Aligned_cols=119 Identities=15% Similarity=0.111 Sum_probs=64.7
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCC--CCCHHHHHHHHHHHhcC--CCC---C-------cccH
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASC--PRDEIRVAKAILESLKG--SVS---S-------QVEM 259 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~--~~~~~~~~~~il~~l~~--~~~---~-------~~~~ 259 (961)
-.+++|+|..|.|||||.+.++.-.. ...+.+++.-.. ....... ...++- +.. . -+.-
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHH
Confidence 46899999999999999999987321 223333332100 0011110 011110 000 0 0011
Q ss_pred HHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCccccc
Q 037574 260 ETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNGTN 319 (961)
Q Consensus 260 ~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~ 319 (961)
+...-.+.+.+..++-+++||+-...-|....+.+...+.....+..||++|.+......
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 112223555566778899999986445556666666665543345678888877665443
No 250
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.38 E-value=0.021 Score=55.91 Aligned_cols=116 Identities=16% Similarity=0.140 Sum_probs=66.0
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCCh---hhhcc---Cc--eeEEEEeCCCCCHHHHHHHHHHHhcCCCC------Cccc
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDS---DVKAN---FD--KRIWVSASCPRDEIRVAKAILESLKGSVS------SQVE 258 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~---~~~~~---F~--~~~wv~~s~~~~~~~~~~~il~~l~~~~~------~~~~ 258 (961)
.-.+++|+|+.|+|||||.+.+..+. ++... |. .+.|+ .+ .+.++.++.... ...+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 34689999999999999999986321 11111 11 12232 21 355666654311 1111
Q ss_pred -HHHHHHHHHHHhcCC--ceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCcccc
Q 037574 259 -METVLQYINEFVQGK--KVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEKNGT 318 (961)
Q Consensus 259 -~~~~~~~l~~~l~~k--r~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~ 318 (961)
-+...-.+.+.+..+ +-+++||+--..-+....+.+...+... ..|..||++|.+.....
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 122233345555566 7789999885444566666666555432 24667888888776543
No 251
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.37 E-value=0.031 Score=58.91 Aligned_cols=131 Identities=25% Similarity=0.353 Sum_probs=74.6
Q ss_pred cccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhh-hccCceeEE----EEeCCCC---
Q 037574 165 FHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDV-KANFDKRIW----VSASCPR--- 236 (961)
Q Consensus 165 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~w----v~~s~~~--- 236 (961)
+-+|..+..--.++|.+ +.+..|.+.|.+|.|||.||-...=..-. ++.|..++- +.+.++.
T Consensus 226 i~prn~eQ~~ALdlLld----------~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfL 295 (436)
T COG1875 226 IRPRNAEQRVALDLLLD----------DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFL 295 (436)
T ss_pred cCcccHHHHHHHHHhcC----------CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcC
Confidence 34577888888888887 67899999999999999998877533222 334443221 2233211
Q ss_pred --CHHH----HHHHHHHHh---cCCCCCcccHHHHHHHH-H---------HHhcCC---ceEEEeecccCCCChhhHHHH
Q 037574 237 --DEIR----VAKAILESL---KGSVSSQVEMETVLQYI-N---------EFVQGK---KVLLVLDDVWWNACPRYWEQL 294 (961)
Q Consensus 237 --~~~~----~~~~il~~l---~~~~~~~~~~~~~~~~l-~---------~~l~~k---r~LlVlDdvw~~~~~~~~~~l 294 (961)
+.++ -.+.|...+ .... ... +...+.+ . .+++|+ +-++|+|... +-. -.++
T Consensus 296 PG~eEeKm~PWmq~i~DnLE~L~~~~--~~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQ-NLT---phei 368 (436)
T COG1875 296 PGTEEEKMGPWMQAIFDNLEVLFSPN--EPG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQ-NLT---PHEL 368 (436)
T ss_pred CCchhhhccchHHHHHhHHHHHhccc--ccc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhh-ccC---HHHH
Confidence 1111 122222222 1111 111 2222222 1 133444 4589999996 433 3456
Q ss_pred HHhccCCCCCcEEEEecC
Q 037574 295 MYSLKSGSEGSRILVTRR 312 (961)
Q Consensus 295 ~~~l~~~~~gs~ilvTtR 312 (961)
...+...+.||||+.|--
T Consensus 369 kTiltR~G~GsKIVl~gd 386 (436)
T COG1875 369 KTILTRAGEGSKIVLTGD 386 (436)
T ss_pred HHHHHhccCCCEEEEcCC
Confidence 667777889999999864
No 252
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.36 E-value=0.026 Score=56.67 Aligned_cols=64 Identities=9% Similarity=0.057 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC--CCCcEEEEecCCCcccccccc
Q 037574 259 METVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG--SEGSRILVTRRGEKNGTNMTE 322 (961)
Q Consensus 259 ~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~~~~~ 322 (961)
-++-.-.+.+.+-..+-+|+-|+=-.+-|.+.-+.+...+... ..|..||+.|-+..+|..+..
T Consensus 146 GqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr 211 (226)
T COG1136 146 GQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADR 211 (226)
T ss_pred HHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCE
Confidence 3444455777788889999999775455566666666666643 458889999999999987653
No 253
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.36 E-value=0.0017 Score=67.61 Aligned_cols=122 Identities=16% Similarity=0.073 Sum_probs=62.2
Q ss_pred cccCCCCccEEEeccCCCccc-cccchhhhccCCcccEEEccCCChhhh--hhhcc------cchhhcCCCCcceEeccC
Q 037574 567 SVYNQKKLRSLGVEHGGGFMN-GIVLSKVFDQLTCLRTLELSNHDNVLC--KVIKK------VPKQIKRLIHLRYLNLSK 637 (961)
Q Consensus 567 ~~~~~~~Lr~L~l~~~~~~~~-~~~~~~~~~~l~~Lr~L~L~~~~~~~~--~~~~~------lp~~i~~l~~Lr~L~L~~ 637 (961)
.+..+++|++|+++.|..-.+ ...+...+.++..|+.|.|.+|..-.. ..+.. ..+-+++-+.||++....
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 345566777777776651111 011223456667777777776630000 00000 122244556677777766
Q ss_pred CCCcccCC-----cchhccCCCcEeecCCCCCC----cccccccccCCCCcEEEeCCcccc
Q 037574 638 NNKIKKLP-----KTLCELYNLQTLELSWCSNL----RNLPQGMGKLINLRHVVNVGTPLS 689 (961)
Q Consensus 638 ~~~i~~lp-----~~i~~L~~L~~L~l~~~~~l----~~lP~~i~~L~~L~~L~l~~~~l~ 689 (961)
|. +..-+ ..+...+.|+.+.+.+|..- ..+-..+..+++|+.|++.+|.+.
T Consensus 167 Nr-len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 167 NR-LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred cc-cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 66 54433 23455567777777665511 112234566677777777666543
No 254
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.089 Score=55.55 Aligned_cols=196 Identities=11% Similarity=0.137 Sum_probs=103.3
Q ss_pred ccccchHHHHHHHHHHhCCCCCCc---CCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHH
Q 037574 164 EFHGRNVEKKNILQLLKGESSDEE---SGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIR 240 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 240 (961)
++=|-++.+++|.+.+.-+-.+.+ .-+-..++-|.+||++|.|||-||++|++ +....| +.+... +
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----IrvvgS----E 220 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVVGS----E 220 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEeccH----H
Confidence 466888888888877653321110 00123457788999999999999999999 455445 433321 1
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhc-CCceEEEeecccC----------CCChhhHHHHHHhc---cCC--CCC
Q 037574 241 VAKAILESLKGSVSSQVEMETVLQYINEFVQ-GKKVLLVLDDVWW----------NACPRYWEQLMYSL---KSG--SEG 304 (961)
Q Consensus 241 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdvw~----------~~~~~~~~~l~~~l---~~~--~~g 304 (961)
++...-+. -..+.+.+.+..+ ..++.|++|.+.- ..+.+.-..++..| ..+ ...
T Consensus 221 ----lVqKYiGE------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 221 ----LVQKYIGE------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred ----HHHHHhcc------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 22222111 1345555666554 5688999998831 11222222233333 222 235
Q ss_pred cEEEEecCCCcccccccccccccCCCCCc-ceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCch--
Q 037574 305 SRILVTRRGEKNGTNMTEIGLGEKDGTNM-TEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLP-- 381 (961)
Q Consensus 305 s~ilvTtR~~~v~~~~~~~~~~~~~~~~~-~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~P-- 381 (961)
-|||..|...++....- ..+.+. ..+++..-+.+.-.+.|+-++- .....+.-+++. |++.|.|.-
T Consensus 291 vKVI~ATNR~D~LDPAL------LRPGR~DRkIEfplPd~~gR~~Il~IHtr-kM~l~~dvd~e~----la~~~~g~sGA 359 (406)
T COG1222 291 VKVIMATNRPDILDPAL------LRPGRFDRKIEFPLPDEEGRAEILKIHTR-KMNLADDVDLEL----LARLTEGFSGA 359 (406)
T ss_pred eEEEEecCCccccChhh------cCCCcccceeecCCCCHHHHHHHHHHHhh-hccCccCcCHHH----HHHhcCCCchH
Confidence 68888886665443211 011111 5667764455555566665543 222233344444 455555543
Q ss_pred --HHHHHHHhhc
Q 037574 382 --FAVKILGSLL 391 (961)
Q Consensus 382 --Lai~~~~~~l 391 (961)
-|+.+=|+++
T Consensus 360 dlkaictEAGm~ 371 (406)
T COG1222 360 DLKAICTEAGMF 371 (406)
T ss_pred HHHHHHHHHhHH
Confidence 3444445544
No 255
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.34 E-value=0.011 Score=57.22 Aligned_cols=130 Identities=22% Similarity=0.338 Sum_probs=65.9
Q ss_pred cccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCC-CHHHHHH
Q 037574 165 FHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPR-DEIRVAK 243 (961)
Q Consensus 165 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~ 243 (961)
++|....+.++.+.+..... ...-|.|+|..|+||+.+|+.+++.... ...-||.+.... +.+.+-.
T Consensus 1 liG~s~~m~~~~~~~~~~a~--------~~~pVlI~GE~GtGK~~lA~~IH~~s~r----~~~pfi~vnc~~~~~~~~e~ 68 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS--------SDLPVLITGETGTGKELLARAIHNNSPR----KNGPFISVNCAALPEELLES 68 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT--------STS-EEEECSTTSSHHHHHHHHHHCSTT----TTS-EEEEETTTS-HHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhC--------CCCCEEEEcCCCCcHHHHHHHHHHhhhc----ccCCeEEEehhhhhcchhhh
Confidence 46788888888887765442 2355679999999999999999884221 112234444332 3333333
Q ss_pred HHHHHhcCCCCCc-ccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC------C-----CCcEEEEec
Q 037574 244 AILESLKGSVSSQ-VEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG------S-----EGSRILVTR 311 (961)
Q Consensus 244 ~il~~l~~~~~~~-~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~------~-----~gs~ilvTt 311 (961)
+++..-.+..... .... ..+.. -..=-|+||++. .-....-..|...+..+ . ...|||.||
T Consensus 69 ~LFG~~~~~~~~~~~~~~---G~l~~---A~~GtL~Ld~I~-~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st 141 (168)
T PF00158_consen 69 ELFGHEKGAFTGARSDKK---GLLEQ---ANGGTLFLDEIE-DLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIAST 141 (168)
T ss_dssp HHHEBCSSSSTTTSSEBE---HHHHH---TTTSEEEEETGG-GS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEE
T ss_pred hhhccccccccccccccC---Cceee---ccceEEeecchh-hhHHHHHHHHHHHHhhchhccccccccccccceEEeec
Confidence 3333221111110 0000 11111 233478899995 44444445565555422 1 246788887
Q ss_pred CC
Q 037574 312 RG 313 (961)
Q Consensus 312 R~ 313 (961)
..
T Consensus 142 ~~ 143 (168)
T PF00158_consen 142 SK 143 (168)
T ss_dssp SS
T ss_pred Cc
Confidence 63
No 256
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.33 E-value=0.096 Score=64.16 Aligned_cols=189 Identities=14% Similarity=0.123 Sum_probs=94.3
Q ss_pred CccccchHHHHHHHHHHhCCCCCCc---CCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEE---SGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEI 239 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 239 (961)
.++.|.+..++.+.+.+.-.-...+ ..+....+-+.++|++|+|||+||+.+++. ....| +.+.. .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~----~ 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRG----P 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----H
Confidence 3577888888877776542111000 000123455889999999999999999984 33333 33221 1
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccC-------CCCh----hhHHHHHHhccC--CCCCcE
Q 037574 240 RVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWW-------NACP----RYWEQLMYSLKS--GSEGSR 306 (961)
Q Consensus 240 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~-------~~~~----~~~~~l~~~l~~--~~~gs~ 306 (961)
+++....+ .+...+...+...-...+.+|++|++.. ..+. ....++...+.. ...+--
T Consensus 522 ----~l~~~~vG-----ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 ----EILSKWVG-----ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred ----HHhhcccC-----cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 11111111 1111222222233346679999999831 0000 112223333332 123445
Q ss_pred EEEecCCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCch
Q 037574 307 ILVTRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLP 381 (961)
Q Consensus 307 ilvTtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~P 381 (961)
||.||...+.....-.. .+.-...+.+...+.++-.++|+.+.-.... ....++ ..+++.+.|.-
T Consensus 593 vI~aTn~~~~ld~allR-----pgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~-~~~~~l----~~la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLR-----PGRFDRLILVPPPDEEARKEIFKIHTRSMPL-AEDVDL----EELAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcC-----CCccceEEEeCCcCHHHHHHHHHHHhcCCCC-CccCCH----HHHHHHcCCCC
Confidence 66677555433221100 0011157888888999999999776532211 222233 44566676643
No 257
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.31 E-value=0.018 Score=59.90 Aligned_cols=88 Identities=18% Similarity=0.251 Sum_probs=54.2
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCc-eeEEEEeCCCC-CHHHHHHHHHHHhcCC-------CCCcccHH---
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFD-KRIWVSASCPR-DEIRVAKAILESLKGS-------VSSQVEME--- 260 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~-~~~~~~~~il~~l~~~-------~~~~~~~~--- 260 (961)
+-..++|+|..|+|||||++.+++ .++.+|+ .++++-+.+.. ++.++..++.+.=... ..+.....
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 446799999999999999999999 5555564 45556666554 4445555554431111 11111111
Q ss_pred --HHHHHHHHHh--c-CCceEEEeecc
Q 037574 261 --TVLQYINEFV--Q-GKKVLLVLDDV 282 (961)
Q Consensus 261 --~~~~~l~~~l--~-~kr~LlVlDdv 282 (961)
...-.+.+++ + ++.+|+++||+
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1222344444 3 89999999999
No 258
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.29 E-value=0.0057 Score=57.49 Aligned_cols=108 Identities=20% Similarity=0.284 Sum_probs=61.8
Q ss_pred ccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhh-hccCceeEEEEeCCCCCHHHHHHH
Q 037574 166 HGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDV-KANFDKRIWVSASCPRDEIRVAKA 244 (961)
Q Consensus 166 vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~s~~~~~~~~~~~ 244 (961)
||+...++++.+.+..-. .....|.|+|..|+||+++|+.++..... ...|.. +.+... . .+
T Consensus 1 vG~S~~~~~l~~~l~~~a--------~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~---~~~~~~-~-----~~ 63 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA--------KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIV---IDCASL-P-----AE 63 (138)
T ss_dssp --SCHHHHHHHHHHHHHH--------CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCC---CCHHCT-C-----HH
T ss_pred CCCCHHHHHHHHHHHHHh--------CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEE---echhhC-c-----HH
Confidence 466666777766665433 23456789999999999999999874322 122211 111110 0 11
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccC-CCCCcEEEEecCCC
Q 037574 245 ILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKS-GSEGSRILVTRRGE 314 (961)
Q Consensus 245 il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~-~~~gs~ilvTtR~~ 314 (961)
++++ .+.--|+++|+. .-+.+....+...+.. .....|+|.||...
T Consensus 64 ~l~~-----------------------a~~gtL~l~~i~-~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 64 LLEQ-----------------------AKGGTLYLKNID-RLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp HHHH-----------------------CTTSEEEEECGC-CS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred HHHH-----------------------cCCCEEEECChH-HCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 1111 145568899995 4455666667767664 35677999998744
No 259
>PRK06696 uridine kinase; Validated
Probab=96.29 E-value=0.0094 Score=61.26 Aligned_cols=43 Identities=19% Similarity=0.137 Sum_probs=35.8
Q ss_pred cchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhC
Q 037574 167 GRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 167 Gr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.|.+-+++|.+.+..... ++..+|+|.|.+|+||||||+.+.+
T Consensus 2 ~~~~~~~~la~~~~~~~~-------~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 2 SRKQLIKELAEHILTLNL-------TRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred cHHHHHHHHHHHHHHhCC-------CCceEEEEECCCCCCHHHHHHHHHH
Confidence 467778888888875432 5678999999999999999999987
No 260
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.27 E-value=0.019 Score=61.80 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=43.1
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhh----ccCceeEEEEeCCCCCHHHHHHHHHHHhcCC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVK----ANFDKRIWVSASCPRDEIRVAKAILESLKGS 252 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~ 252 (961)
+.-.++-|+|++|+|||+|+.+++-..... ..=..++||+....|+++++. ++++.++.+
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d 157 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVD 157 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCC
Confidence 445789999999999999999876432221 112468999998888888765 466666543
No 261
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.26 E-value=0.084 Score=57.42 Aligned_cols=106 Identities=11% Similarity=0.173 Sum_probs=56.2
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCC-CHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhc
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPR-DEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQ 271 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 271 (961)
..++|+|+|++|+||||++..++.... ...+ .+..++..... ...+-++...+.++.......+.+++.+.+...-.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~-~~Gk-kVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH-GKKK-TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH-HcCC-cEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 458999999999999999999987321 2222 34455543221 22233334444444332223345556555554432
Q ss_pred C-CceEEEeecccCC-CChhhHHHHHHhccC
Q 037574 272 G-KKVLLVLDDVWWN-ACPRYWEQLMYSLKS 300 (961)
Q Consensus 272 ~-kr~LlVlDdvw~~-~~~~~~~~l~~~l~~ 300 (961)
. +.=+|++|-.-.. .+......+...+..
T Consensus 318 ~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~ 348 (436)
T PRK11889 318 EARVDYILIDTAGKNYRASETVEEMIETMGQ 348 (436)
T ss_pred ccCCCEEEEeCccccCcCHHHHHHHHHHHhh
Confidence 1 2346777877311 123345555555543
No 262
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.26 E-value=0.018 Score=54.50 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 037574 196 VIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~ 216 (961)
+|.+.|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999985
No 263
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.25 E-value=0.0029 Score=57.98 Aligned_cols=21 Identities=43% Similarity=0.678 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 037574 196 VIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~ 216 (961)
||+|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999988
No 264
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.25 E-value=0.016 Score=56.32 Aligned_cols=116 Identities=16% Similarity=0.117 Sum_probs=65.7
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCC--CCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhc
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASC--PRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQ 271 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~--~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 271 (961)
-.+++|+|..|.|||||.+.++... ....+.+++.-.. ..+..+..+ ..++-- .+-+.-+...-.+.+.+-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~-~qLS~G~~qrl~laral~ 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAMV-YQLSVGERQMVEIARALA 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEEE-EecCHHHHHHHHHHHHHh
Confidence 3689999999999999999998732 2334555543111 111111111 011100 011122223334555666
Q ss_pred CCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCcc
Q 037574 272 GKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEKN 316 (961)
Q Consensus 272 ~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v 316 (961)
.++-++++|+--..-|......+...+... ..|..||++|.+...
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 778899999986445666666666666532 236678888877653
No 265
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.24 E-value=0.02 Score=61.21 Aligned_cols=84 Identities=26% Similarity=0.319 Sum_probs=56.0
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCC-----CCcccHHHHHHHH
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSV-----SSQVEMETVLQYI 266 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l 266 (961)
+.-+++-|+|++|+||||||.+++.. ....-..++||+....++.. .+++++.+. ....+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 45678999999999999999998873 33344568899877766653 344444321 1223455555555
Q ss_pred HHHhc-CCceEEEeecc
Q 037574 267 NEFVQ-GKKVLLVLDDV 282 (961)
Q Consensus 267 ~~~l~-~kr~LlVlDdv 282 (961)
...++ +..-+||+|-|
T Consensus 126 ~~li~s~~~~lIVIDSv 142 (325)
T cd00983 126 DSLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHHhccCCCEEEEcch
Confidence 55553 45678999987
No 266
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.22 E-value=0.012 Score=57.02 Aligned_cols=79 Identities=13% Similarity=0.154 Sum_probs=44.6
Q ss_pred EEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcC--Cc
Q 037574 197 IWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQG--KK 274 (961)
Q Consensus 197 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~--kr 274 (961)
+.|.|..|+|||++|.++... ....++++.-...++. ++...|.+.-... +......+....+.+.+.. +.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R-~~~w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRR-PAHWRTIETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhC-CCCceEeecHHHHHHHHHhcCCC
Confidence 679999999999999999763 2235667776666654 3444443322222 2222212222233333321 23
Q ss_pred eEEEeecc
Q 037574 275 VLLVLDDV 282 (961)
Q Consensus 275 ~LlVlDdv 282 (961)
-.+++|.+
T Consensus 75 ~~VLIDcl 82 (169)
T cd00544 75 DVVLIDCL 82 (169)
T ss_pred CEEEEEcH
Confidence 47999987
No 267
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.21 E-value=0.022 Score=58.16 Aligned_cols=127 Identities=14% Similarity=0.081 Sum_probs=76.3
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCC-----CCCHHHHHHHHHHHhcCCC------CCcccHHH
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASC-----PRDEIRVAKAILESLKGSV------SSQVEMET 261 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-----~~~~~~~~~~il~~l~~~~------~~~~~~~~ 261 (961)
+-.+++|||..|.|||||++.+..= . ..-.+.+++.-.+ .....+...++++.++... +...+-.+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L--~-~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGL--E-EPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcC--c-CCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 4468999999999999999999882 2 2223344433111 2234455677777776432 11222223
Q ss_pred HH-HHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccC--CCCCcEEEEecCCCcccccccc
Q 037574 262 VL-QYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKS--GSEGSRILVTRRGEKNGTNMTE 322 (961)
Q Consensus 262 ~~-~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~--~~~gs~ilvTtR~~~v~~~~~~ 322 (961)
.+ -.|.+.+.-++-++|.|..-...|...-.++...+.+ ...|-..+..|-+-.++..++.
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 32 3466778889999999987423333334445555543 2346667777777776666543
No 268
>PRK09354 recA recombinase A; Provisional
Probab=96.20 E-value=0.024 Score=61.19 Aligned_cols=84 Identities=25% Similarity=0.334 Sum_probs=57.2
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCC-----CCcccHHHHHHHH
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSV-----SSQVEMETVLQYI 266 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l 266 (961)
+.-+++-|+|++|+||||||.+++.. ....-..++||+....++.. .+++++.+. ......++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45679999999999999999999874 33334578899887776653 455554432 1223455555555
Q ss_pred HHHhc-CCceEEEeecc
Q 037574 267 NEFVQ-GKKVLLVLDDV 282 (961)
Q Consensus 267 ~~~l~-~kr~LlVlDdv 282 (961)
...++ ++.-+||+|-|
T Consensus 131 ~~li~s~~~~lIVIDSv 147 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSV 147 (349)
T ss_pred HHHhhcCCCCEEEEeCh
Confidence 55553 45678999988
No 269
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.18 E-value=0.017 Score=61.77 Aligned_cols=84 Identities=25% Similarity=0.324 Sum_probs=55.7
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCC-----CCcccHHHHHHHH
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSV-----SSQVEMETVLQYI 266 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l 266 (961)
+.-+++-|+|++|+||||||.+++.. ....-..++|++....++.. .+++++.+. ......++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45679999999999999999998774 33333567789876655543 345554331 1223445555555
Q ss_pred HHHhc-CCceEEEeecc
Q 037574 267 NEFVQ-GKKVLLVLDDV 282 (961)
Q Consensus 267 ~~~l~-~kr~LlVlDdv 282 (961)
...++ +..-+||+|.+
T Consensus 126 ~~li~~~~~~lIVIDSv 142 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSV 142 (321)
T ss_pred HHHhhccCCcEEEEcch
Confidence 55553 45678999988
No 270
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.13 E-value=0.0074 Score=58.67 Aligned_cols=80 Identities=14% Similarity=0.154 Sum_probs=43.8
Q ss_pred EEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCc---ccHHHHHHHHHHHhcC
Q 037574 196 VIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQ---VEMETVLQYINEFVQG 272 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~---~~~~~~~~~l~~~l~~ 272 (961)
++.|.|.+|+||||+|..+... .. ...+++.....++ .+..+.|..........- .....+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~--~~---~~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ--SG---LQVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH--cC---CCcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 6899999999999999999763 11 1234444444433 345555544433222111 1112344444443332
Q ss_pred CceEEEeecc
Q 037574 273 KKVLLVLDDV 282 (961)
Q Consensus 273 kr~LlVlDdv 282 (961)
.-++++|.+
T Consensus 77 -~~~VlID~L 85 (170)
T PRK05800 77 -GRCVLVDCL 85 (170)
T ss_pred -CCEEEehhH
Confidence 337889987
No 271
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.12 E-value=0.028 Score=56.79 Aligned_cols=206 Identities=12% Similarity=0.124 Sum_probs=116.2
Q ss_pred cccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCC----hhhhccCceeEEEEeCCC-----
Q 037574 165 FHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDD----SDVKANFDKRIWVSASCP----- 235 (961)
Q Consensus 165 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~----~~~~~~F~~~~wv~~s~~----- 235 (961)
+.++++....+...... +..+-+.++|+.|.||-|.+..+.++ .-.+-.-+.+.|.+-|..
T Consensus 15 l~~~~e~~~~Lksl~~~----------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEis 84 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSST----------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEIS 84 (351)
T ss_pred cccHHHHHHHHHHhccc----------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEE
Confidence 45566666666555442 55788999999999999987777653 111223345556543332
Q ss_pred -----C-----------CHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcC-Cce-EEEeecccCCCChhhHHHHHHh
Q 037574 236 -----R-----------DEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQG-KKV-LLVLDDVWWNACPRYWEQLMYS 297 (961)
Q Consensus 236 -----~-----------~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~-LlVlDdvw~~~~~~~~~~l~~~ 297 (961)
+ .-+-+.++|++++..... + ...+ +.| ++|+-.+. .-..+.-..++..
T Consensus 85 tvsS~yHlEitPSDaG~~DRvViQellKevAQt~q-----------i--e~~~qr~fKvvvi~ead-~LT~dAQ~aLRRT 150 (351)
T KOG2035|consen 85 TVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQ-----------I--ETQGQRPFKVVVINEAD-ELTRDAQHALRRT 150 (351)
T ss_pred EecccceEEeChhhcCcccHHHHHHHHHHHHhhcc-----------h--hhccccceEEEEEechH-hhhHHHHHHHHHH
Confidence 1 122344444444432210 0 0112 233 55665553 3344555566666
Q ss_pred ccCCCCCcEEEEecCCCc--ccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHH
Q 037574 298 LKSGSEGSRILVTRRGEK--NGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVG 375 (961)
Q Consensus 298 l~~~~~gs~ilvTtR~~~--v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~ 375 (961)
...-.+.+|+|+...+.+ +...-... -.+.+...+++|....+++..-..+-.- -.+++.+|++
T Consensus 151 MEkYs~~~RlIl~cns~SriIepIrSRC----------l~iRvpaps~eeI~~vl~~v~~kE~l~l----p~~~l~rIa~ 216 (351)
T KOG2035|consen 151 MEKYSSNCRLILVCNSTSRIIEPIRSRC----------LFIRVPAPSDEEITSVLSKVLKKEGLQL----PKELLKRIAE 216 (351)
T ss_pred HHHHhcCceEEEEecCcccchhHHhhhe----------eEEeCCCCCHHHHHHHHHHHHHHhcccC----cHHHHHHHHH
Confidence 655456678877554332 22222222 6789999999999999998875433321 2678999999
Q ss_pred hcCCchHHHHHHHhhccCC----------CCHHHHHHHhhhhh
Q 037574 376 KCKGLPFAVKILGSLLRFK----------TSIEEWQSVLDSEI 408 (961)
Q Consensus 376 ~c~G~PLai~~~~~~l~~~----------~~~~~w~~~l~~~~ 408 (961)
+++|.---+..+-..++.+ -..-+|+-+..+..
T Consensus 217 kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 217 KSNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYIQEIA 259 (351)
T ss_pred HhcccHHHHHHHHHHHHhccccccccCCCCCCccHHHHHHHHH
Confidence 9999864333333332211 12347877765543
No 272
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.12 E-value=0.18 Score=53.97 Aligned_cols=169 Identities=14% Similarity=0.059 Sum_probs=85.2
Q ss_pred ccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHH
Q 037574 164 EFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAK 243 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 243 (961)
.++=..+....+..++.. .+.|.|.|.+|+||||+|+.++. +....| +.|..+...+..+++.
T Consensus 46 ~y~f~~~~~~~vl~~l~~------------~~~ilL~G~pGtGKTtla~~lA~--~l~~~~---~rV~~~~~l~~~DliG 108 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAY------------DRRVMVQGYHGTGKSTHIEQIAA--RLNWPC---VRVNLDSHVSRIDLVG 108 (327)
T ss_pred CccCCHHHHHHHHHHHhc------------CCcEEEEeCCCChHHHHHHHHHH--HHCCCe---EEEEecCCCChhhcCC
Confidence 455555555667766653 13589999999999999999988 443333 3455555555444332
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccC--------------CCCCcEEEE
Q 037574 244 AILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKS--------------GSEGSRILV 309 (961)
Q Consensus 244 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~--------------~~~gs~ilv 309 (961)
.-.-.+.... ...... -..+-.. ..+.+.+++|.+. ...++....+...+.. .++..++|.
T Consensus 109 ~~~~~l~~g~-~~~~f~--~GpL~~A-~~~g~illlDEin-~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviA 183 (327)
T TIGR01650 109 KDAIVLKDGK-QITEFR--DGILPWA-LQHNVALCFDEYD-AGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFA 183 (327)
T ss_pred CceeeccCCc-ceeEEe--cCcchhH-HhCCeEEEechhh-ccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEE
Confidence 2110010000 000000 0001111 1345778999884 3344444444333331 113456666
Q ss_pred ecCCCcccc----cccccccccCCCCCcc-eeecCCCChHHHHHHHHHHH
Q 037574 310 TRRGEKNGT----NMTEIGLGEKDGTNMT-EIGLGELSAKECRSLFRQIA 354 (961)
Q Consensus 310 TtR~~~v~~----~~~~~~~~~~~~~~~~-~~~l~~L~~~~~~~Lf~~~~ 354 (961)
|........ ..++..+......++. .+.++.++.++=.+++.+..
T Consensus 184 T~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 184 TANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred eeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhc
Confidence 665433111 1222211122222333 45788999998888887764
No 273
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.1 Score=58.72 Aligned_cols=168 Identities=20% Similarity=0.275 Sum_probs=89.3
Q ss_pred CccccchHHHHHHHHHHhCCCCCC--cCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDE--ESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIR 240 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~--~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 240 (961)
.++-|.++.+.++.+++..-...+ ..-+-...+-|.++|++|.|||.||+.+.++ ..-. |+.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge--l~vP-----f~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE--LGVP-----FLSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh--cCCc-----eEeecch-----
Confidence 357788988888888766421100 0001134567889999999999999999994 3323 3554432
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCCh----------hhHHHHHHhccC---C-CCCcE
Q 037574 241 VAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACP----------RYWEQLMYSLKS---G-SEGSR 306 (961)
Q Consensus 241 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~----------~~~~~l~~~l~~---~-~~gs~ 306 (961)
+|+..+.+. +.+.+.+.+.+....-++++++|++.--... ....++...+.. . ..|-.
T Consensus 258 ---eivSGvSGE-----SEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~ 329 (802)
T KOG0733|consen 258 ---EIVSGVSGE-----SEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDP 329 (802)
T ss_pred ---hhhcccCcc-----cHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCC
Confidence 233333322 2233333344444678999999999410001 112222222221 1 12333
Q ss_pred EEE---ecCCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcC
Q 037574 307 ILV---TRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFD 356 (961)
Q Consensus 307 ilv---TtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 356 (961)
||| |+|...+-...... +.-..-|.|.--++..-.++++..+-+
T Consensus 330 VlVIgATnRPDslDpaLRRa------GRFdrEI~l~vP~e~aR~~IL~~~~~~ 376 (802)
T KOG0733|consen 330 VLVIGATNRPDSLDPALRRA------GRFDREICLGVPSETAREEILRIICRG 376 (802)
T ss_pred eEEEecCCCCcccCHHHhcc------ccccceeeecCCchHHHHHHHHHHHhh
Confidence 433 44554444433332 111145667666777777777666543
No 274
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.11 E-value=0.01 Score=59.38 Aligned_cols=106 Identities=23% Similarity=0.247 Sum_probs=53.3
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh--
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFV-- 270 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-- 270 (961)
+-+++.|.|.+|+||||++..+... .... ...+.+..... +....+.+..+.. ..+...........-
T Consensus 17 ~~~~~~l~G~aGtGKT~~l~~~~~~--~~~~-g~~v~~~apT~----~Aa~~L~~~~~~~---a~Ti~~~l~~~~~~~~~ 86 (196)
T PF13604_consen 17 GDRVSVLQGPAGTGKTTLLKALAEA--LEAA-GKRVIGLAPTN----KAAKELREKTGIE---AQTIHSFLYRIPNGDDE 86 (196)
T ss_dssp TCSEEEEEESTTSTHHHHHHHHHHH--HHHT-T--EEEEESSH----HHHHHHHHHHTS----EEEHHHHTTEECCEECC
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHH--HHhC-CCeEEEECCcH----HHHHHHHHhhCcc---hhhHHHHHhcCCccccc
Confidence 3468899999999999999998773 3322 22333333222 2222233333211 111111100000000
Q ss_pred ----cCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEec
Q 037574 271 ----QGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTR 311 (961)
Q Consensus 271 ----~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTt 311 (961)
..++-+||+|++. .-+...+..+....+. .|+++|+.-
T Consensus 87 ~~~~~~~~~vliVDEas-mv~~~~~~~ll~~~~~--~~~klilvG 128 (196)
T PF13604_consen 87 GRPELPKKDVLIVDEAS-MVDSRQLARLLRLAKK--SGAKLILVG 128 (196)
T ss_dssp SSCC-TSTSEEEESSGG-G-BHHHHHHHHHHS-T---T-EEEEEE
T ss_pred ccccCCcccEEEEeccc-ccCHHHHHHHHHHHHh--cCCEEEEEC
Confidence 1234699999997 4455666666666554 577888764
No 275
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.09 E-value=0.0078 Score=57.95 Aligned_cols=101 Identities=21% Similarity=0.281 Sum_probs=60.4
Q ss_pred CccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccc--hhhcC
Q 037574 549 KFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVP--KQIKR 626 (961)
Q Consensus 549 ~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp--~~i~~ 626 (961)
....++++.|.+. . ...|..+++|.+|.+.+|. +. .+-+..-.-+++|.+|.|.+|. +..+- +.+..
T Consensus 43 ~~d~iDLtdNdl~-~-l~~lp~l~rL~tLll~nNr--It-~I~p~L~~~~p~l~~L~LtnNs------i~~l~dl~pLa~ 111 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-K-LDNLPHLPRLHTLLLNNNR--IT-RIDPDLDTFLPNLKTLILTNNS------IQELGDLDPLAS 111 (233)
T ss_pred ccceecccccchh-h-cccCCCccccceEEecCCc--ce-eeccchhhhccccceEEecCcc------hhhhhhcchhcc
Confidence 3445566666652 1 2356677778888887776 33 3333333456677788888773 44432 33566
Q ss_pred CCCcceEeccCCCCcccCCc----chhccCCCcEeecCC
Q 037574 627 LIHLRYLNLSKNNKIKKLPK----TLCELYNLQTLELSW 661 (961)
Q Consensus 627 l~~Lr~L~L~~~~~i~~lp~----~i~~L~~L~~L~l~~ 661 (961)
++.|+||.+-+|+ ++..+. .++++++|++||+..
T Consensus 112 ~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 112 CPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCccceeeecCCc-hhcccCceeEEEEecCcceEeehhh
Confidence 7778888877777 555432 356666666666654
No 276
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.06 E-value=0.033 Score=60.36 Aligned_cols=60 Identities=18% Similarity=0.154 Sum_probs=43.4
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhh----ccCceeEEEEeCCCCCHHHHHHHHHHHhcCC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVK----ANFDKRIWVSASCPRDEIRVAKAILESLKGS 252 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~ 252 (961)
..-.++-|+|.+|+|||+|+.+++-..... +.-..++||+....|.++++. ++++.++.+
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~-~ia~~~g~d 187 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIV-PIAERFGMD 187 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHH-HHHHHcCCC
Confidence 445788899999999999999986432221 112478999999989888765 466666543
No 277
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.04 E-value=0.018 Score=56.53 Aligned_cols=119 Identities=17% Similarity=0.111 Sum_probs=64.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcC--CC----CC--------cccH
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKG--SV----SS--------QVEM 259 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~--~~----~~--------~~~~ 259 (961)
-.+++|+|..|.|||||++.++.... ...+.+++.-....... ..+-..++- +. .. -..-
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 35899999999999999999987421 22334443210000000 001011100 00 00 0111
Q ss_pred HHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCcccc
Q 037574 260 ETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEKNGT 318 (961)
Q Consensus 260 ~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~ 318 (961)
+...-.+.+.+..++=++++|+--..-|....+.+...+... ..|..||++|.+.....
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 222234566677888899999985444555566666665542 23677888888766444
No 278
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.02 E-value=0.058 Score=55.96 Aligned_cols=86 Identities=24% Similarity=0.388 Sum_probs=54.8
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCC-----------------
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVS----------------- 254 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~----------------- 254 (961)
+.-.++.|+|.+|+|||++|.++.... .+ +=..++|++..+. ...+.+.+ ++++....
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA-LK-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH-Hh-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 456899999999999999999996532 22 2346788887654 44454443 33332110
Q ss_pred ---CcccHHHHHHHHHHHhcC-CceEEEeecc
Q 037574 255 ---SQVEMETVLQYINEFVQG-KKVLLVLDDV 282 (961)
Q Consensus 255 ---~~~~~~~~~~~l~~~l~~-kr~LlVlDdv 282 (961)
...+.+.+...+.+.+.. +.-++|+|.+
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~ 129 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSL 129 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecH
Confidence 112335566666666653 5668999987
No 279
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.98 E-value=0.059 Score=61.56 Aligned_cols=168 Identities=14% Similarity=0.087 Sum_probs=81.8
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVA 242 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 242 (961)
.++.|.+..++.+.+....-.......+-...+-|.++|++|+|||.+|+.+.+. ....| +-+..+ .+
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~------~l- 295 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVG------KL- 295 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhH------Hh-
Confidence 3567877666655543211000000001134567899999999999999999883 33222 112221 11
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCC-------CChhhH----HHHHHhccCCCCCcEEEEec
Q 037574 243 KAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWN-------ACPRYW----EQLMYSLKSGSEGSRILVTR 311 (961)
Q Consensus 243 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~-------~~~~~~----~~l~~~l~~~~~gs~ilvTt 311 (961)
.....+ .+...+.+.+...-...+++|++|++..- .+...- ..+...+.....+--||.||
T Consensus 296 ---~~~~vG-----ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT 367 (489)
T CHL00195 296 ---FGGIVG-----ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA 367 (489)
T ss_pred ---cccccC-----hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 111100 11112222222222457899999999410 011111 11222223233344456677
Q ss_pred CCCcccc-cccccccccCCCCCcceeecCCCChHHHHHHHHHHHcC
Q 037574 312 RGEKNGT-NMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFD 356 (961)
Q Consensus 312 R~~~v~~-~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 356 (961)
....... .+-.. +.-...+.++.-+.++-.++|+.+...
T Consensus 368 N~~~~Ld~allR~------GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 368 NNIDLLPLEILRK------GRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred CChhhCCHHHhCC------CcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 6554221 11110 011156778888999999999887643
No 280
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.97 E-value=0.037 Score=59.75 Aligned_cols=59 Identities=20% Similarity=0.157 Sum_probs=41.3
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhh---c-cCceeEEEEeCCCCCHHHHHHHHHHHhcC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVK---A-NFDKRIWVSASCPRDEIRVAKAILESLKG 251 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~~s~~~~~~~~~~~il~~l~~ 251 (961)
..-.++.|+|.+|+|||||+..++...... + .-..++|++....+...+ +.++++.++.
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~ 156 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGL 156 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCC
Confidence 456899999999999999999987532221 1 123579999888777776 4455565543
No 281
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.97 E-value=0.027 Score=59.98 Aligned_cols=88 Identities=17% Similarity=0.219 Sum_probs=46.8
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCC-CHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhc
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPR-DEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQ 271 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 271 (961)
...+++|+|++|+||||++..++.....+..-..+..|+..... .....+....+.++.......+..++...+... .
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~-~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL-R 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-c
Confidence 45799999999999999999998743222111245556644321 122233333333333322223344444444433 3
Q ss_pred CCceEEEeecc
Q 037574 272 GKKVLLVLDDV 282 (961)
Q Consensus 272 ~kr~LlVlDdv 282 (961)
+ .=+|++|..
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 3 346777753
No 282
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.96 E-value=0.082 Score=53.32 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=36.2
Q ss_pred HHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCcccccc
Q 037574 265 YINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEKNGTNM 320 (961)
Q Consensus 265 ~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~~~ 320 (961)
.+.+.+..++-++++|+--..-|...-+.+...+... ..|..||++|.+......+
T Consensus 137 ~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~ 193 (200)
T PRK13540 137 ALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKA 193 (200)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhcccc
Confidence 3445556677899999885344555555566555542 3467799998877765554
No 283
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.96 E-value=0.037 Score=54.31 Aligned_cols=121 Identities=17% Similarity=0.100 Sum_probs=63.1
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCC--CCCHHHHHHHHHHHhcCCC--CC-------cccHHHH
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASC--PRDEIRVAKAILESLKGSV--SS-------QVEMETV 262 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~--~~~~~~~~~~il~~l~~~~--~~-------~~~~~~~ 262 (961)
-.+++|+|..|.|||||++.+..-. ....+.+++.-.. ........+.+ ..+.... .. -+.-+..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i-~~~~q~~~~~~~tv~~~lLS~G~~q 103 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNELGDHV-GYLPQDDELFSGSIAENILSGGQRQ 103 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHHHHhhe-EEECCCCccccCcHHHHCcCHHHHH
Confidence 3589999999999999999998732 1223333332100 01111111100 0000000 00 0111222
Q ss_pred HHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCcccc
Q 037574 263 LQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEKNGT 318 (961)
Q Consensus 263 ~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~ 318 (961)
.-.+.+.+..++-+++||+-...-|......+...+... ..|..||++|.+.....
T Consensus 104 rv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 333555566677899999986444555555565555432 23667888887766543
No 284
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.94 E-value=0.05 Score=59.26 Aligned_cols=58 Identities=19% Similarity=0.272 Sum_probs=41.8
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccC----ceeEEEEeCCCCCHHHHHHHHHHHhc
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANF----DKRIWVSASCPRDEIRVAKAILESLK 250 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~~s~~~~~~~~~~~il~~l~ 250 (961)
+.-.++-|+|++|+|||+++.+++........+ ..++||+....|+..++. ++++.++
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g 161 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALG 161 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcC
Confidence 446789999999999999999998642221111 478999998888877654 4455554
No 285
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.92 E-value=0.0086 Score=57.68 Aligned_cols=101 Identities=26% Similarity=0.337 Sum_probs=65.3
Q ss_pred cccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcccCCcchh-ccCCCcEeecCCCCCCcccc--cccccCC
Q 037574 600 CLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKKLPKTLC-ELYNLQTLELSWCSNLRNLP--QGMGKLI 676 (961)
Q Consensus 600 ~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~-~L~~L~~L~l~~~~~l~~lP--~~i~~L~ 676 (961)
....+||++|. +..++. +..++.|..|.|..|. |..+-+.+. .+++|++|.+.+|+ +.++- ..+..++
T Consensus 43 ~~d~iDLtdNd------l~~l~~-lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p 113 (233)
T KOG1644|consen 43 QFDAIDLTDND------LRKLDN-LPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCP 113 (233)
T ss_pred ccceecccccc------hhhccc-CCCccccceEEecCCc-ceeeccchhhhccccceEEecCcc-hhhhhhcchhccCC
Confidence 45567888773 555433 6677888888888887 666654444 45678888888776 66553 2356677
Q ss_pred CCcEEEeCCcccccCCcC----CCCCCCCCcCCceEe
Q 037574 677 NLRHVVNVGTPLSYMPKG----IERWSCLRTLSEFIV 709 (961)
Q Consensus 677 ~L~~L~l~~~~l~~~p~~----i~~L~~L~~L~~~~~ 709 (961)
+|++|.+-+|.+...+.. +..+++|++|+.-.+
T Consensus 114 ~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 114 KLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 888888876666543321 556666766664443
No 286
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.91 E-value=0.031 Score=55.78 Aligned_cols=87 Identities=20% Similarity=0.221 Sum_probs=50.5
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCC-CCHHHHHHHHHHHhcCCC---CCcccHHH-HHHHHHH
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCP-RDEIRVAKAILESLKGSV---SSQVEMET-VLQYINE 268 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~il~~l~~~~---~~~~~~~~-~~~~l~~ 268 (961)
++|+.++|+.|+||||.+.+++.. ...+=..+..++.... ....+-++..++.++... ....+..+ +.+.+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~--~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAAR--LKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHH--HhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 368999999999999999888874 3333335667776533 345566677777776542 11222333 3333443
Q ss_pred HhcCCceEEEeecc
Q 037574 269 FVQGKKVLLVLDDV 282 (961)
Q Consensus 269 ~l~~kr~LlVlDdv 282 (961)
.-..+.=+|++|-.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 32223347777766
No 287
>PRK13695 putative NTPase; Provisional
Probab=95.88 E-value=0.0097 Score=58.55 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 037574 196 VIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
.++|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999874
No 288
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.2 Score=56.50 Aligned_cols=159 Identities=19% Similarity=0.294 Sum_probs=88.2
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCC
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGK 273 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 273 (961)
..-|.++|++|.|||-||++|++. .+..| ++|-.+ +++...+ + .+...+...+.+.-...
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANE--ag~NF-----isVKGP----ELlNkYV----G-----ESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANE--AGANF-----ISVKGP----ELLNKYV----G-----ESERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhh--ccCce-----EeecCH----HHHHHHh----h-----hHHHHHHHHHHHhhcCC
Confidence 456889999999999999999994 44555 554332 2222111 1 11222333334444578
Q ss_pred ceEEEeecccC----CCCh------hhHHHHHHhccC--CCCCcEEEEecCCCccccc-ccccccccCCCCCc-ceeecC
Q 037574 274 KVLLVLDDVWW----NACP------RYWEQLMYSLKS--GSEGSRILVTRRGEKNGTN-MTEIGLGEKDGTNM-TEIGLG 339 (961)
Q Consensus 274 r~LlVlDdvw~----~~~~------~~~~~l~~~l~~--~~~gs~ilvTtR~~~v~~~-~~~~~~~~~~~~~~-~~~~l~ 339 (961)
+|+|+||.+.. ..+. ....++..-+.. ...|--||-.|..+++... +-. +.+. ..+-++
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLR-------PGRlDk~LyV~ 677 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILR-------PGRLDKLLYVG 677 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcC-------CCccCceeeec
Confidence 99999999941 0011 122333333332 2345566766765554332 211 1111 455667
Q ss_pred CCChHHHHHHHHHHHcCCCCC-CCccchHHHHHHHHHhcCCch
Q 037574 340 ELSAKECRSLFRQIAFDGRSS-DDREKFEPIGRLVVGKCKGLP 381 (961)
Q Consensus 340 ~L~~~~~~~Lf~~~~~~~~~~-~~~~~l~~~~~~I~~~c~G~P 381 (961)
.-+.+|-.++++...-....+ .++-.+.+||+. .+|.|.-
T Consensus 678 lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 678 LPNAEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred CCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 778888888888876432222 344567777663 4565553
No 289
>PHA02244 ATPase-like protein
Probab=95.82 E-value=0.04 Score=59.42 Aligned_cols=21 Identities=29% Similarity=0.591 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 037574 196 VIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~ 216 (961)
-|.|+|+.|+|||+||+.+++
T Consensus 121 PVLL~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAE 141 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999988
No 290
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.82 E-value=0.06 Score=56.26 Aligned_cols=88 Identities=23% Similarity=0.222 Sum_probs=57.9
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHH-hcC----CCCCcccHHHHHHHH
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILES-LKG----SVSSQVEMETVLQYI 266 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~-l~~----~~~~~~~~~~~~~~l 266 (961)
+.-+++=|+|+.|+||||+|.+++-. .+..-..++|++.-..+++..+. ++... +.. .........++++.+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAK-QLGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHH-HHHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 56689999999999999999999874 33344488999999989887653 44444 211 111222223344444
Q ss_pred HHHhcCCceEEEeecc
Q 037574 267 NEFVQGKKVLLVLDDV 282 (961)
Q Consensus 267 ~~~l~~kr~LlVlDdv 282 (961)
.+....+--|+|+|.+
T Consensus 135 ~~~~~~~i~LvVVDSv 150 (279)
T COG0468 135 ARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHhccCCCCEEEEecC
Confidence 4444444668889988
No 291
>PRK06762 hypothetical protein; Provisional
Probab=95.81 E-value=0.098 Score=50.93 Aligned_cols=22 Identities=41% Similarity=0.663 Sum_probs=20.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 037574 195 PVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999987
No 292
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.79 E-value=0.28 Score=49.29 Aligned_cols=181 Identities=15% Similarity=0.155 Sum_probs=96.0
Q ss_pred CccccchHHHHH---HHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHH
Q 037574 163 LEFHGRNVEKKN---ILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEI 239 (961)
Q Consensus 163 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 239 (961)
.+++|.++.+.. |++.|..+.. -+...++-|..+|++|.|||.+|+.+.+..++ .| +.+- ..
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~----Fg~WAPknVLFyGppGTGKTm~Akalane~kv--p~-----l~vk----at 185 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPER----FGDWAPKNVLFYGPPGTGKTMMAKALANEAKV--PL-----LLVK----AT 185 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHH----hcccCcceeEEECCCCccHHHHHHHHhcccCC--ce-----EEec----hH
Confidence 457898876643 6677765431 11245788999999999999999999995432 22 2221 11
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHh-cCCceEEEeecccC--------CCC---hhhHHHHHHhccC--CCCCc
Q 037574 240 RVAKAILESLKGSVSSQVEMETVLQYINEFV-QGKKVLLVLDDVWW--------NAC---PRYWEQLMYSLKS--GSEGS 305 (961)
Q Consensus 240 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~--------~~~---~~~~~~l~~~l~~--~~~gs 305 (961)
++ |-+.++ +....++.+.+.. +..+|++++|.+.- ... .+....+..-+.. .+-|-
T Consensus 186 ~l---iGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGV 255 (368)
T COG1223 186 EL---IGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGV 255 (368)
T ss_pred HH---HHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCce
Confidence 11 111121 1112222333322 45789999998830 000 1122222222222 23465
Q ss_pred EEEEecCCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCc
Q 037574 306 RILVTRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGL 380 (961)
Q Consensus 306 ~ilvTtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~ 380 (961)
..|-.|...++....-.. .-..-++..--+++|-.+++...+-.-.-+-+ . -.+.++++.+|.
T Consensus 256 vtIaaTN~p~~LD~aiRs-------RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~-~----~~~~~~~~t~g~ 318 (368)
T COG1223 256 VTIAATNRPELLDPAIRS-------RFEEEIEFKLPNDEERLEILEYYAKKFPLPVD-A----DLRYLAAKTKGM 318 (368)
T ss_pred EEEeecCChhhcCHHHHh-------hhhheeeeeCCChHHHHHHHHHHHHhCCCccc-c----CHHHHHHHhCCC
Confidence 566666666544432211 11155777777889999988887632221111 1 145566666665
No 293
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.75 E-value=0.085 Score=54.30 Aligned_cols=50 Identities=22% Similarity=0.295 Sum_probs=32.4
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHH
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAI 245 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 245 (961)
+.-.++.|.|..|+||||+|.+++... .+.. ..+++++... +..++.+.+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 345699999999999999987765532 2222 3456666333 445555555
No 294
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.74 E-value=0.085 Score=57.75 Aligned_cols=89 Identities=13% Similarity=0.140 Sum_probs=50.8
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCC-CCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhc
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCP-RDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQ 271 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 271 (961)
+..++.++|+.|+||||++.++......+.....+..++.... ....+-++...+.++.......+..++...+.+ +.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-l~ 214 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-LR 214 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH-hc
Confidence 3479999999999999999999874222212234556654332 234455555555555443222222333333333 34
Q ss_pred CCceEEEeeccc
Q 037574 272 GKKVLLVLDDVW 283 (961)
Q Consensus 272 ~kr~LlVlDdvw 283 (961)
++ =+|++|..-
T Consensus 215 ~~-DlVLIDTaG 225 (374)
T PRK14722 215 NK-HMVLIDTIG 225 (374)
T ss_pred CC-CEEEEcCCC
Confidence 44 456689884
No 295
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.70 E-value=0.04 Score=60.12 Aligned_cols=133 Identities=16% Similarity=0.171 Sum_probs=71.4
Q ss_pred ccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHH
Q 037574 164 EFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAK 243 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 243 (961)
.++|+...+.++.+.+.... ....-|.|+|..|+||+++|+.+...... .-...+.|+++... ...+..
T Consensus 7 ~liG~S~~~~~~~~~i~~~a--------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r--~~~pfv~v~c~~~~-~~~~~~ 75 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLA--------PLDKPVLIIGERGTGKELIASRLHYLSSR--WQGPFISLNCAALN-ENLLDS 75 (326)
T ss_pred ccEECCHHHHHHHHHHHHHh--------CCCCCEEEECCCCCcHHHHHHHHHHhCCc--cCCCeEEEeCCCCC-HHHHHH
Confidence 48899999998888877654 23346889999999999999999763111 11122334444322 222222
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCC-----------CCcEEEEecC
Q 037574 244 AILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGS-----------EGSRILVTRR 312 (961)
Q Consensus 244 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR 312 (961)
.++..-.+....... .....+. ....=.|+||||. .-.......+...+..+. ...+||.||.
T Consensus 76 ~lfg~~~~~~~g~~~--~~~g~l~---~a~gGtL~l~~i~-~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~ 149 (326)
T PRK11608 76 ELFGHEAGAFTGAQK--RHPGRFE---RADGGTLFLDELA-TAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATN 149 (326)
T ss_pred HHccccccccCCccc--ccCCchh---ccCCCeEEeCChh-hCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCc
Confidence 222111110000000 0001111 1223358899995 445566667777665432 1357888775
Q ss_pred C
Q 037574 313 G 313 (961)
Q Consensus 313 ~ 313 (961)
.
T Consensus 150 ~ 150 (326)
T PRK11608 150 A 150 (326)
T ss_pred h
Confidence 4
No 296
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.70 E-value=0.033 Score=55.25 Aligned_cols=52 Identities=10% Similarity=0.131 Sum_probs=34.8
Q ss_pred HHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCcc
Q 037574 265 YINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEKN 316 (961)
Q Consensus 265 ~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v 316 (961)
.+...+-.++-+++||+--..-|....+.+...+... ..|..||++|.+...
T Consensus 114 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 166 (182)
T cd03215 114 VLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDE 166 (182)
T ss_pred HHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 3555666788899999885445666666666665542 236678888877643
No 297
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.69 E-value=0.054 Score=58.86 Aligned_cols=60 Identities=18% Similarity=0.173 Sum_probs=43.2
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhh---c-cCceeEEEEeCCCCCHHHHHHHHHHHhcCC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVK---A-NFDKRIWVSASCPRDEIRVAKAILESLKGS 252 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~~s~~~~~~~~~~~il~~l~~~ 252 (961)
..-.++-|+|.+|+|||+|+..++-..... + .-..++|++....|.++++ .+|++.++..
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~ 184 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLN 184 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCC
Confidence 445788999999999999999887532221 1 1136899999998888775 4667766543
No 298
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.69 E-value=0.078 Score=54.12 Aligned_cols=52 Identities=23% Similarity=0.221 Sum_probs=32.6
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEKNG 317 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~ 317 (961)
+...+..++-+++||+--..-|......+...+... ..|..||++|.+....
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~ 195 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLV 195 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 444455667899999885445556666666655542 2466677777766543
No 299
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.18 Score=55.75 Aligned_cols=56 Identities=27% Similarity=0.366 Sum_probs=38.2
Q ss_pred ccccch---HHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhh
Q 037574 164 EFHGRN---VEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDV 220 (961)
Q Consensus 164 ~~vGr~---~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 220 (961)
++-|-+ .|+++|+++|.++..=. .-++.=++-|.++|++|.|||-||+.|+-++.+
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kft-rLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFT-RLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV 363 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhh-hccCcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence 455665 56778888888653100 001123577899999999999999999986443
No 300
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.68 E-value=0.056 Score=65.70 Aligned_cols=135 Identities=17% Similarity=0.225 Sum_probs=74.1
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVA 242 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 242 (961)
..++|+...+..+.+.+.... ....-|.|+|..|+|||++|+.+++.... .-...+.+++.... ...+-
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a--------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r--~~~~~v~i~c~~~~-~~~~~ 444 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVA--------QSDSTVLILGETGTGKELIARAIHNLSGR--NNRRMVKMNCAAMP-AGLLE 444 (686)
T ss_pred cceeecCHHHHHHHHHHHHHh--------CCCCCEEEECCCCcCHHHHHHHHHHhcCC--CCCCeEEEecccCC-hhHhh
Confidence 368999998988877766543 23356889999999999999999874221 11233444444322 11122
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCC-----------CCcEEEEec
Q 037574 243 KAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGS-----------EGSRILVTR 311 (961)
Q Consensus 243 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTt 311 (961)
..+.....+..... . ......+ -....=.|+||||. .-..+....+...+..+. .+.+||.||
T Consensus 445 ~~lfg~~~~~~~g~-~-~~~~g~l---e~a~~GtL~Ldei~-~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t 518 (686)
T PRK15429 445 SDLFGHERGAFTGA-S-AQRIGRF---ELADKSSLFLDEVG-DMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAAT 518 (686)
T ss_pred hhhcCccccccccc-c-cchhhHH---HhcCCCeEEEechh-hCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeC
Confidence 22221111111000 0 0011111 12233579999996 445566666777664421 345888888
Q ss_pred CCC
Q 037574 312 RGE 314 (961)
Q Consensus 312 R~~ 314 (961)
...
T Consensus 519 ~~~ 521 (686)
T PRK15429 519 NRD 521 (686)
T ss_pred CCC
Confidence 543
No 301
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.66 E-value=0.089 Score=57.05 Aligned_cols=90 Identities=11% Similarity=0.099 Sum_probs=54.8
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCC-CHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPR-DEIRVAKAILESLKGSVSSQVEMETVLQYINEFV 270 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 270 (961)
.+.+++.|+|+.|+||||++..++... ...-..+.+|++.... ....-++...+.++.......+.+++...+...-
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l--~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQL--LKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 356899999999999999999998632 2222346667764332 2344555555555544333345556655554432
Q ss_pred c-CCceEEEeeccc
Q 037574 271 Q-GKKVLLVLDDVW 283 (961)
Q Consensus 271 ~-~kr~LlVlDdvw 283 (961)
. +..=+|++|-.-
T Consensus 282 ~~~~~D~VLIDTAG 295 (407)
T PRK12726 282 YVNCVDHILIDTVG 295 (407)
T ss_pred hcCCCCEEEEECCC
Confidence 1 344578888774
No 302
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.64 E-value=0.021 Score=56.73 Aligned_cols=78 Identities=17% Similarity=0.221 Sum_probs=46.3
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHh--cCCCCCcccHHHHHHHHHHH
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESL--KGSVSSQVEMETVLQYINEF 269 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l--~~~~~~~~~~~~~~~~l~~~ 269 (961)
.++.+|+|.|.+|+||||+|+.++. ..+..+ ++-++-...+. ..-.....+.. ....+...+.+-+.+.|...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~--~~~I~~D~YYk-~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE--QLGVEK--VVVISLDDYYK-DQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH--HhCcCc--ceEeecccccc-chhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 3567999999999999999999988 344331 22222221111 11111111111 12234566778888888888
Q ss_pred hcCCc
Q 037574 270 VQGKK 274 (961)
Q Consensus 270 l~~kr 274 (961)
++|++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88887
No 303
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.63 E-value=0.078 Score=57.64 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=41.7
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhc----cCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKA----NFDKRIWVSASCPRDEIRVAKAILESLK 250 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~il~~l~ 250 (961)
+.-.++-|+|.+|+||||++.+++....... .=..++||+....|+..++. ++++.++
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 3458899999999999999999976432211 11378999998888877654 4555554
No 304
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.62 E-value=0.043 Score=56.63 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=23.1
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
++..+++|.|+.|+|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5678999999999999999999987
No 305
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.59 E-value=0.037 Score=54.62 Aligned_cols=117 Identities=14% Similarity=0.087 Sum_probs=62.5
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEE---eCCCC-CHHHHHHHHHHHhc---CCC--CCc--------
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVS---ASCPR-DEIRVAKAILESLK---GSV--SSQ-------- 256 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---~s~~~-~~~~~~~~il~~l~---~~~--~~~-------- 256 (961)
-.+++|+|..|.|||||++.+.... ....+.+.+. ++... .... ....+. ... ...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~----~~~~i~~~~q~~~~~~~~t~~~~l~ 98 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLE---EPDSGSILIDGEDLTDLEDELPP----LRRRIGMVFQDFALFPHLTVLENIA 98 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEccccchhHHH----HhhcEEEEecCCccCCCCCHHHhee
Confidence 4689999999999999999998632 1223333332 11100 0011 111111 000 000
Q ss_pred --cc-HHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCC--CCcEEEEecCCCccc
Q 037574 257 --VE-METVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGS--EGSRILVTRRGEKNG 317 (961)
Q Consensus 257 --~~-~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~--~gs~ilvTtR~~~v~ 317 (961)
.+ -+...-.+...+..++=+++||+--..-|......+...+.... .|..||++|.+....
T Consensus 99 ~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 164 (178)
T cd03229 99 LGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEA 164 (178)
T ss_pred ecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 11 12222334556667788999998854455666666666655422 256788887765543
No 306
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.59 E-value=0.012 Score=54.52 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCC
Q 037574 194 LPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
.--|+|.||+|+||||+++.+.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 346899999999999999999873
No 307
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.59 E-value=0.088 Score=54.64 Aligned_cols=49 Identities=20% Similarity=0.361 Sum_probs=34.8
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHH
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKA 244 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 244 (961)
+.-.++.|.|.+|+|||++|.++.... . ..-..++||+... ++..+.+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeC--CHHHHHHH
Confidence 456899999999999999999986531 1 2335678888654 44555554
No 308
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.58 E-value=0.11 Score=52.75 Aligned_cols=54 Identities=6% Similarity=0.040 Sum_probs=35.0
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccC-CCCCcEEEEecCCCccccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKS-GSEGSRILVTRRGEKNGTN 319 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~-~~~gs~ilvTtR~~~v~~~ 319 (961)
+...+..++-+++||+--..-|....+.+...+.. ...|..||++|.+......
T Consensus 138 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 138 LARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG 192 (207)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc
Confidence 44455567789999988544456666666666653 2346678888877664443
No 309
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.58 E-value=0.15 Score=51.79 Aligned_cols=54 Identities=13% Similarity=0.031 Sum_probs=35.1
Q ss_pred HHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCcccc
Q 037574 265 YINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNGT 318 (961)
Q Consensus 265 ~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 318 (961)
.+.+.+..++-+++||+-...-|....+.+...+.....|..||++|.+.....
T Consensus 135 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~ 188 (207)
T cd03369 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTII 188 (207)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 344555567789999998644566666666666654334667777777665443
No 310
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.58 E-value=0.12 Score=51.74 Aligned_cols=50 Identities=22% Similarity=0.237 Sum_probs=31.6
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEK 315 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~ 315 (961)
+.+.+...+-+++||+--..-|....+.+...+... ..|..||++|.+.+
T Consensus 138 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 138 IAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 444555667899999885444555556666555432 23667888876554
No 311
>PRK08233 hypothetical protein; Provisional
Probab=95.58 E-value=0.034 Score=55.13 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCC
Q 037574 194 LPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
..+|+|.|.+|+||||||+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999999873
No 312
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.58 E-value=0.057 Score=63.59 Aligned_cols=135 Identities=16% Similarity=0.255 Sum_probs=73.5
Q ss_pred CCCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChh-hhccCceeEEEEeCCCCCHH
Q 037574 161 DPLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSD-VKANFDKRIWVSASCPRDEI 239 (961)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~s~~~~~~ 239 (961)
....++|....+.++.+.+.... .....|.|+|..|+|||++|+.+++... -... .+.|+++...+ .
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a--------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~p---fv~i~c~~~~~-~ 261 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVA--------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRP---FVKVNCAALSE-T 261 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHh--------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCC---eEEeecCCCCH-H
Confidence 34578999999999988877544 2334577999999999999999987422 1222 23344443221 1
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCC-----------CCcEEE
Q 037574 240 RVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGS-----------EGSRIL 308 (961)
Q Consensus 240 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~-----------~gs~il 308 (961)
.+-..++..-.+....... ...........=.|+||+|. .-.......+...+..+. ...+||
T Consensus 262 ~~~~~lfg~~~~~~~~~~~-----~~~g~~~~a~~GtL~ldei~-~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI 335 (534)
T TIGR01817 262 LLESELFGHEKGAFTGAIA-----QRKGRFELADGGTLFLDEIG-EISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLV 335 (534)
T ss_pred HHHHHHcCCCCCccCCCCc-----CCCCcccccCCCeEEEechh-hCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEE
Confidence 1111221111000000000 00000011234468999996 455666667777765432 124788
Q ss_pred EecCC
Q 037574 309 VTRRG 313 (961)
Q Consensus 309 vTtR~ 313 (961)
.||..
T Consensus 336 ~~s~~ 340 (534)
T TIGR01817 336 AATNR 340 (534)
T ss_pred EeCCC
Confidence 87753
No 313
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.57 E-value=0.055 Score=54.56 Aligned_cols=86 Identities=16% Similarity=0.192 Sum_probs=49.3
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEE-------EEeCCCCCHHHH--HHHHHHHhcCCCCCc------
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIW-------VSASCPRDEIRV--AKAILESLKGSVSSQ------ 256 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-------v~~s~~~~~~~~--~~~il~~l~~~~~~~------ 256 (961)
.+..+|.++||+|+||||..|.++.+..-+..-..++= |...-..++++. .++.+++........
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 56778899999999999999999885332222122221 112223345443 567777765544221
Q ss_pred ---ccHHHHHHHHHHHhcCCceEE
Q 037574 257 ---VEMETVLQYINEFVQGKKVLL 277 (961)
Q Consensus 257 ---~~~~~~~~~l~~~l~~kr~Ll 277 (961)
...++++..+.+....-+|.|
T Consensus 97 LF~tk~dqv~~~iek~~~~~~~~l 120 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKRAEEFDYVL 120 (366)
T ss_pred HHHHHHHHHHHHHHHhhcccCEEE
Confidence 234556666666544434443
No 314
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.56 E-value=0.014 Score=66.21 Aligned_cols=49 Identities=22% Similarity=0.417 Sum_probs=39.5
Q ss_pred ccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhC
Q 037574 164 EFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
+++|.++.+++|++.|.....+- ...-+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl----~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGL----EEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhc----CCCCceEEEecCCCCCchHHHHHHHH
Confidence 58999999999999984322111 14457999999999999999999988
No 315
>PTZ00301 uridine kinase; Provisional
Probab=95.56 E-value=0.023 Score=57.25 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 037574 194 LPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
..+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999999876
No 316
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.55 E-value=0.043 Score=56.03 Aligned_cols=73 Identities=14% Similarity=0.130 Sum_probs=39.7
Q ss_pred EEEEEcCCCchHHHHHHHHhCChhhhc-cC-ceeEEEEeCCCCCHHHHHHHHHHHhc-CCCCCcccHHHHHHHHHHHhc
Q 037574 196 VIWILGKEGIGKTALARQVFDDSDVKA-NF-DKRIWVSASCPRDEIRVAKAILESLK-GSVSSQVEMETVLQYINEFVQ 271 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~~~~~~-~F-~~~~wv~~s~~~~~~~~~~~il~~l~-~~~~~~~~~~~~~~~l~~~l~ 271 (961)
+|+|.|..|+||||+|+.+.. .... .. ..+..++....+.......... .+. ...+...+.+.+.+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~--~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~-~~~~~g~p~~~d~~~l~~~L~~l~~ 76 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA--LLSRWPDHPNVELITTDGFLYPNKELIERG-LMDRKGFPESYDMEALLKFLKDIKS 76 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH--HHhhcCCCCcEEEEecCcccCcHHHHHHhh-hhhcCCCcccCCHHHHHHHHHHHHC
Confidence 589999999999999999987 3321 11 2344555544433222222211 111 112344556666655555544
No 317
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.55 E-value=0.044 Score=54.98 Aligned_cols=79 Identities=16% Similarity=0.208 Sum_probs=44.9
Q ss_pred EEEEEcCCCchHHHHHHHHhCChhhh-ccCc---eeEEEEeCCCCCHHHHHHHHHHHh----cCCCCCcccHHHHHHHHH
Q 037574 196 VIWILGKEGIGKTALARQVFDDSDVK-ANFD---KRIWVSASCPRDEIRVAKAILESL----KGSVSSQVEMETVLQYIN 267 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~---~~~wv~~s~~~~~~~~~~~il~~l----~~~~~~~~~~~~~~~~l~ 267 (961)
||+|.|.+|+||||+|+.+.. ... .... ....++.......... ...-... ....+...+.+.+.+.|.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~--~L~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ--ILNKRGIPAMEMDIILSLDDFYDDYHL-RDRKGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--HHTTCTTTCCCSEEEEEGGGGBHHHHH-HHHHHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH--HhCccCcCccceeEEEeecccccccch-hhHhhccccccCCCCccccCHHHHHHHHH
Confidence 799999999999999999987 333 2222 1333333322222221 1121211 112234567778888887
Q ss_pred HHhcCCceEE
Q 037574 268 EFVQGKKVLL 277 (961)
Q Consensus 268 ~~l~~kr~Ll 277 (961)
...+++..-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7666665443
No 318
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.52 E-value=0.13 Score=52.38 Aligned_cols=56 Identities=16% Similarity=0.108 Sum_probs=34.3
Q ss_pred HHHHHhcCCceEEEeecccCCCChhhHHHHHHhccC-CCCCcEEEEecCCCcccccc
Q 037574 265 YINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKS-GSEGSRILVTRRGEKNGTNM 320 (961)
Q Consensus 265 ~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~-~~~gs~ilvTtR~~~v~~~~ 320 (961)
.+.+.+-.++-+++||+--..-|....+.+...+.. ...|..||++|.+.......
T Consensus 147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~ 203 (214)
T PRK13543 147 ALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPV 203 (214)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhh
Confidence 344455566779999988534455555566555543 22356788888777655443
No 319
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.51 E-value=0.017 Score=54.60 Aligned_cols=35 Identities=37% Similarity=0.422 Sum_probs=27.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEE
Q 037574 195 PVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVS 231 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 231 (961)
.||.|.|.+|+||||||+.+.+ +....-..+.++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 5899999999999999999998 4544444566664
No 320
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.51 E-value=0.042 Score=52.94 Aligned_cols=117 Identities=15% Similarity=0.105 Sum_probs=65.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCC--CHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcC
Q 037574 195 PVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPR--DEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQG 272 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 272 (961)
.+++|+|..|.|||||++.+.... ......+++.-.... ..... ...+.--. +-..-+...-.+...+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~-qlS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEEL----RRRIGYVP-QLSGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHH----HhceEEEe-eCCHHHHHHHHHHHHHhc
Confidence 689999999999999999998742 233455554321111 11111 11111000 011112223335555666
Q ss_pred CceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCccccc
Q 037574 273 KKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEKNGTN 319 (961)
Q Consensus 273 kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~~ 319 (961)
.+-++++|+.-..-|......+...+... ..+..+|++|.+......
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 78899999985444555555565555432 225678888876654443
No 321
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.49 E-value=0.073 Score=52.83 Aligned_cols=21 Identities=29% Similarity=0.667 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 037574 196 VIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~ 216 (961)
||.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 322
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.46 E-value=0.037 Score=51.46 Aligned_cols=44 Identities=30% Similarity=0.340 Sum_probs=33.4
Q ss_pred EEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCC
Q 037574 196 VIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGS 252 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~ 252 (961)
+|.|.|++|+||||+|+.+.++ ..-.| |+ .-.++++|++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~--~gl~~-----vs------aG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH--LGLKL-----VS------AGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH--hCCce-----ee------ccHHHHHHHHHcCCC
Confidence 6899999999999999999984 22111 22 347888999888765
No 323
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.46 E-value=0.082 Score=54.11 Aligned_cols=123 Identities=15% Similarity=0.113 Sum_probs=69.1
Q ss_pred cEEEEEcCCCchHHHHHHHHhCChh-----hh------ccC---ceeEEEEe----CCCC--CH----------------
Q 037574 195 PVIWILGKEGIGKTALARQVFDDSD-----VK------ANF---DKRIWVSA----SCPR--DE---------------- 238 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~-----~~------~~F---~~~~wv~~----s~~~--~~---------------- 238 (961)
.+++|+|+.|.|||||.+.+..-.+ +. ..+ ..+.||+= ...| ++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 7999999999999999999976211 10 001 23555531 1111 11
Q ss_pred ------HHHHHHHHHHhcCCC------CCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccC-CCCCc
Q 037574 239 ------IRVAKAILESLKGSV------SSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKS-GSEGS 305 (961)
Q Consensus 239 ------~~~~~~il~~l~~~~------~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~-~~~gs 305 (961)
++...+.++.++... .+-+.-+.-.-.|.+.|..++=|++||.-...-|...-..+...+.. ...|.
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~ 190 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK 190 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 234445555554332 11122222334466778889999999976433344444444444443 12288
Q ss_pred EEEEecCCCccc
Q 037574 306 RILVTRRGEKNG 317 (961)
Q Consensus 306 ~ilvTtR~~~v~ 317 (961)
.||++|-+-...
T Consensus 191 tIl~vtHDL~~v 202 (254)
T COG1121 191 TVLMVTHDLGLV 202 (254)
T ss_pred EEEEEeCCcHHh
Confidence 899988876543
No 324
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.45 E-value=0.019 Score=58.27 Aligned_cols=122 Identities=15% Similarity=0.114 Sum_probs=59.0
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCC---CcccHHHHHHHHHHH-
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVS---SQVEMETVLQYINEF- 269 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~---~~~~~~~~~~~l~~~- 269 (961)
.+++.|+|+.|.||||+.+.+...... .+-...+|.. . .. ...+.++...+..... .......-.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~--~-~~-~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l 103 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD--S-AT-IGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKAL 103 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC--C-cE-EeeeeeeeeeeCCccChhhccchHHHHHHHHHHHH
Confidence 478999999999999999998743211 1111222211 0 00 0011112222221110 011111112222222
Q ss_pred -hcCCceEEEeecccCCCChhhHHH----HHHhccCC-CCCcEEEEecCCCcccccc
Q 037574 270 -VQGKKVLLVLDDVWWNACPRYWEQ----LMYSLKSG-SEGSRILVTRRGEKNGTNM 320 (961)
Q Consensus 270 -l~~kr~LlVlDdvw~~~~~~~~~~----l~~~l~~~-~~gs~ilvTtR~~~v~~~~ 320 (961)
+..++.|++||..-...+...... +...+... ..+..+|+||-..+.+...
T Consensus 104 ~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 104 RLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 246789999999952223222111 22223222 2346899999988776654
No 325
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.45 E-value=0.062 Score=58.54 Aligned_cols=45 Identities=20% Similarity=0.297 Sum_probs=34.4
Q ss_pred cccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCC
Q 037574 165 FHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 165 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
++|+...+.++.+.+.... ....-|.|+|..|+||+++|+.+.+.
T Consensus 1 liG~S~~m~~~~~~~~~~a--------~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA--------PLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh--------CCCCCEEEECCCCChHHHHHHHHHHh
Confidence 4677777777777766544 23355789999999999999999863
No 326
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.42 E-value=0.021 Score=57.42 Aligned_cols=110 Identities=9% Similarity=0.170 Sum_probs=58.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHH-HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCC
Q 037574 195 PVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEI-RVAKAILESLKGSVSSQVEMETVLQYINEFVQGK 273 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~-~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 273 (961)
.+|.|+|+.|+||||++..+... +.......++.- .++.... .-...++.+-. -..+.....+.++..+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~-e~~~E~~~~~~~~~i~q~~----vg~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTI-EDPIEFVHESKRSLINQRE----VGLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEE-cCCccccccCccceeeecc----cCCCccCHHHHHHHHhcCC
Confidence 47899999999999999988763 333333444432 2211100 00001111100 0111223455667777767
Q ss_pred ceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCccc
Q 037574 274 KVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNG 317 (961)
Q Consensus 274 r~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 317 (961)
+=++++|++- +.+....+.... ..|..++.|+-..++.
T Consensus 75 pd~ii~gEir---d~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 75 PDVILVGEMR---DLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred cCEEEEcCCC---CHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 7799999994 444444433333 2355677777655543
No 327
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.42 E-value=0.13 Score=50.56 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 037574 196 VIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~ 216 (961)
++.++|++|+||||+++.+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999987
No 328
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.41 E-value=0.094 Score=54.93 Aligned_cols=124 Identities=15% Similarity=0.060 Sum_probs=63.7
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhh-hcc--Cc---eeEEEEeCCCC------CHH-----------HHHHHHHHHhc
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDV-KAN--FD---KRIWVSASCPR------DEI-----------RVAKAILESLK 250 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~--F~---~~~wv~~s~~~------~~~-----------~~~~~il~~l~ 250 (961)
-.+++|+|..|.|||||++.++.-... .+. ++ .+.++.-.... +.. +-...+++.++
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g 109 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQ 109 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHHHHcC
Confidence 468999999999999999999864211 110 11 12222211000 111 11222333333
Q ss_pred CCC-----CCc-ccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC--CCCcEEEEecCCCccc
Q 037574 251 GSV-----SSQ-VEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG--SEGSRILVTRRGEKNG 317 (961)
Q Consensus 251 ~~~-----~~~-~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~ 317 (961)
... ... +.-+...-.+...+..++-+++||+--..-|......+...+... ..|..||++|.+....
T Consensus 110 l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i 184 (251)
T PRK09544 110 AGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLV 184 (251)
T ss_pred ChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 211 001 111222233445556677899999885444555555555555432 1256677777766543
No 329
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.41 E-value=0.0073 Score=60.77 Aligned_cols=38 Identities=32% Similarity=0.240 Sum_probs=16.0
Q ss_pred CCCCcceEeccCC--CCcccCCcchhccCCCcEeecCCCC
Q 037574 626 RLIHLRYLNLSKN--NKIKKLPKTLCELYNLQTLELSWCS 663 (961)
Q Consensus 626 ~l~~Lr~L~L~~~--~~i~~lp~~i~~L~~L~~L~l~~~~ 663 (961)
.|++|++|.++.| .....++....++++|++|++++|.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence 3444444444444 2222333333334444444444443
No 330
>PRK05439 pantothenate kinase; Provisional
Probab=95.40 E-value=0.079 Score=56.48 Aligned_cols=80 Identities=19% Similarity=0.163 Sum_probs=46.5
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccC--ceeEEEEeCCCCCHHHHHHHHHHHhc-CCCCCcccHHHHHHHHHH
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANF--DKRIWVSASCPRDEIRVAKAILESLK-GSVSSQVEMETVLQYINE 268 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~il~~l~-~~~~~~~~~~~~~~~l~~ 268 (961)
+..-+|+|.|.+|+||||+|+.+.. ...... ..+.-++...-+-....+..- ..+. ...++.-+.+.+.+.+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg~Pes~D~~~l~~~L~~ 160 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEER-GLMKRKGFPESYDMRALLRFLSD 160 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhhh-hccccCCCcccccHHHHHHHHHH
Confidence 5678999999999999999998876 332221 234445544433332222210 0111 122445667777777777
Q ss_pred HhcCCc
Q 037574 269 FVQGKK 274 (961)
Q Consensus 269 ~l~~kr 274 (961)
...|+.
T Consensus 161 Lk~G~~ 166 (311)
T PRK05439 161 VKSGKP 166 (311)
T ss_pred HHcCCC
Confidence 666665
No 331
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.40 E-value=0.24 Score=55.82 Aligned_cols=57 Identities=23% Similarity=0.140 Sum_probs=35.3
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCC-CCHHHHHHHHHHHhcC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCP-RDEIRVAKAILESLKG 251 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~il~~l~~ 251 (961)
.+.+|.++|.+|+||||.|..++.. ....-..++-|++... ....+.++.+..+++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~--L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY--FKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 4689999999999999999999873 3322123344443321 1223445555666544
No 332
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.40 E-value=0.085 Score=60.72 Aligned_cols=59 Identities=17% Similarity=0.346 Sum_probs=42.3
Q ss_pred ccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEE
Q 037574 164 EFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVS 231 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 231 (961)
+++--.+-++++..||.....+. ...+++.+.|++|+||||.++.++++ -.|+.+-|.+
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~-----~~~~iLlLtGP~G~GKtttv~~La~e----lg~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGS-----SPKRILLLTGPSGCGKTTTVKVLAKE----LGFEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccC-----CCcceEEEECCCCCCHHHHHHHHHHH----hCCeeEEecC
Confidence 34444566778888887543211 34579999999999999999999883 2466677864
No 333
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.40 E-value=0.094 Score=54.67 Aligned_cols=125 Identities=14% Similarity=0.030 Sum_probs=65.8
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhh-c--cCc--eeEEEEeC----CCCCHHHHH--------------HHHHHHhc
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVK-A--NFD--KRIWVSAS----CPRDEIRVA--------------KAILESLK 250 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~--~F~--~~~wv~~s----~~~~~~~~~--------------~~il~~l~ 250 (961)
-.+++|+|..|+|||||++.+....... + .++ .+.++.-. ...++.+.+ .++++.++
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~ 104 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQ 104 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcC
Confidence 4689999999999999999998742211 1 111 12222210 011232222 12233322
Q ss_pred CCC-----CCc-ccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC--CCCcEEEEecCCCcccc
Q 037574 251 GSV-----SSQ-VEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG--SEGSRILVTRRGEKNGT 318 (961)
Q Consensus 251 ~~~-----~~~-~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~ 318 (961)
... ... +.-+...-.|...+..++=+++||+--..-|......+...+... ..|..||++|.+...+.
T Consensus 105 l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~ 180 (246)
T cd03237 105 IEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMID 180 (246)
T ss_pred CHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 211 011 111222233555666778899999885344555555555555442 23667888887765444
No 334
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.39 E-value=0.063 Score=56.79 Aligned_cols=80 Identities=18% Similarity=0.156 Sum_probs=44.2
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccC--ceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANF--DKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEF 269 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 269 (961)
....+|+|.|..|+||||+|+.+.. ...... ..+..++..............-..-....++..+.+.+...+...
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~--ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~L 137 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA--LLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDL 137 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHH
Confidence 4568999999999999999987755 222111 134445544433222222211000011224556667777777766
Q ss_pred hcCC
Q 037574 270 VQGK 273 (961)
Q Consensus 270 l~~k 273 (961)
..|+
T Consensus 138 k~g~ 141 (290)
T TIGR00554 138 KSGK 141 (290)
T ss_pred HCCC
Confidence 6554
No 335
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.39 E-value=0.13 Score=52.92 Aligned_cols=53 Identities=13% Similarity=0.112 Sum_probs=33.5
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCcccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNGT 318 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 318 (961)
+.+.+..++-+++||+....-|....+.+...+.....+..||++|.+.....
T Consensus 150 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 202 (221)
T cd03244 150 LARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTII 202 (221)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 44455566779999998645566666666666654333456777777665433
No 336
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.065 Score=61.23 Aligned_cols=74 Identities=26% Similarity=0.224 Sum_probs=49.5
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCC--CHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPR--DEIRVAKAILESLKGSVSSQVEMETVLQYINEF 269 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 269 (961)
....-|.|.|+.|+|||+||+.+++... +.+.-++..|+++.-. ..+.+++.+ ...+.+.
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l-----------------~~vfse~ 490 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFL-----------------NNVFSEA 490 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHH-----------------HHHHHHH
Confidence 4567799999999999999999998543 4444556667765422 222222221 2233445
Q ss_pred hcCCceEEEeeccc
Q 037574 270 VQGKKVLLVLDDVW 283 (961)
Q Consensus 270 l~~kr~LlVlDdvw 283 (961)
+...+-+|||||+.
T Consensus 491 ~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 491 LWYAPSIIVLDDLD 504 (952)
T ss_pred HhhCCcEEEEcchh
Confidence 67789999999994
No 337
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.38 E-value=0.19 Score=50.42 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=32.7
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccC-CCCCcEEEEecCCCccccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKS-GSEGSRILVTRRGEKNGTN 319 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~-~~~gs~ilvTtR~~~v~~~ 319 (961)
+.+.+..++-+++||+.-..-|...-+.+...+.. ...|..||++|.+......
T Consensus 134 la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~ 188 (195)
T PRK13541 134 IARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKS 188 (195)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccch
Confidence 44455567789999988544455555555555532 2345678888876654443
No 338
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.36 E-value=0.14 Score=56.59 Aligned_cols=106 Identities=11% Similarity=0.063 Sum_probs=59.0
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhc--cCceeEEEEeCCCC-CHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKA--NFDKRIWVSASCPR-DEIRVAKAILESLKGSVSSQVEMETVLQYINEF 269 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~~s~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 269 (961)
..++|.++|+.|+||||.+..++....... +=..+..+++.... .....++...+.++.+.......+++...+.+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 457999999999999999999886322211 11245555554322 222334555555554433334445555555543
Q ss_pred hcCCceEEEeecccCCC-ChhhHHHHHHhccC
Q 037574 270 VQGKKVLLVLDDVWWNA-CPRYWEQLMYSLKS 300 (961)
Q Consensus 270 l~~kr~LlVlDdvw~~~-~~~~~~~l~~~l~~ 300 (961)
...=+|++|..-... +......+...+..
T Consensus 253 --~~~DlVLIDTaGr~~~~~~~l~el~~~l~~ 282 (388)
T PRK12723 253 --KDFDLVLVDTIGKSPKDFMKLAEMKELLNA 282 (388)
T ss_pred --CCCCEEEEcCCCCCccCHHHHHHHHHHHHh
Confidence 345688889884221 22234455555554
No 339
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.36 E-value=0.072 Score=62.11 Aligned_cols=136 Identities=15% Similarity=0.226 Sum_probs=76.3
Q ss_pred CCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHH
Q 037574 162 PLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRV 241 (961)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 241 (961)
...++|+...++++.+.+.... ....-|.|+|..|+|||++|+.+.+.... .-...+.|+++...+ ..+
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a--------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r--~~~p~v~v~c~~~~~-~~~ 254 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVA--------ASDLNVLILGETGVGKELVARAIHAASPR--ADKPLVYLNCAALPE-SLA 254 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHh--------CCCCcEEEECCCCccHHHHHHHHHHhCCc--CCCCeEEEEcccCCh-HHH
Confidence 4568999999999988887654 33457889999999999999999874221 112334455554332 212
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCC-----------CCcEEEEe
Q 037574 242 AKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGS-----------EGSRILVT 310 (961)
Q Consensus 242 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~-----------~gs~ilvT 310 (961)
...++....+....... + ....+ + ....=.|+||+|. .-.......+...+..+. ...+||.|
T Consensus 255 e~~lfG~~~g~~~ga~~-~-~~g~~-~--~a~gGtL~ldeI~-~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~ 328 (509)
T PRK05022 255 ESELFGHVKGAFTGAIS-N-RSGKF-E--LADGGTLFLDEIG-ELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAA 328 (509)
T ss_pred HHHhcCccccccCCCcc-c-CCcch-h--hcCCCEEEecChh-hCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEe
Confidence 22222111111100000 0 00011 1 1122347899996 455666667777765432 24588888
Q ss_pred cCCC
Q 037574 311 RRGE 314 (961)
Q Consensus 311 tR~~ 314 (961)
|...
T Consensus 329 t~~~ 332 (509)
T PRK05022 329 TNRD 332 (509)
T ss_pred cCCC
Confidence 8543
No 340
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.35 E-value=0.048 Score=60.10 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
...++.++|++|+||||++.+++..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999873
No 341
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.35 E-value=0.033 Score=59.66 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=23.6
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
..+..++|||++|.|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999994
No 342
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.34 E-value=0.14 Score=51.30 Aligned_cols=119 Identities=16% Similarity=0.107 Sum_probs=62.6
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEE---------------eCCCC---CHHHHHHHHHHHhcCCCCC
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVS---------------ASCPR---DEIRVAKAILESLKGSVSS 255 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---------------~s~~~---~~~~~~~~il~~l~~~~~~ 255 (961)
-.+++|.|..|.|||||.+.+..-.- .....+.+++. +.+.. ....+...+.-..... .
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~--~ 111 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRRT-GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR--G 111 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC-CCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc--c
Confidence 46899999999999999999987320 01122222211 11111 0011111111100000 1
Q ss_pred cccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCc
Q 037574 256 QVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEK 315 (961)
Q Consensus 256 ~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~ 315 (961)
-+.-+...-.+.+.+..++-++++|+.-..-|....+.+...+... ..|..||++|.+..
T Consensus 112 LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 112 LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 1111222234555566677899999986445666666666666542 23667888887653
No 343
>PRK14974 cell division protein FtsY; Provisional
Probab=95.32 E-value=0.18 Score=54.59 Aligned_cols=116 Identities=16% Similarity=0.084 Sum_probs=57.7
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCC--CHHHHHHHHHHHhcCCCC---CcccHHH-HHHH
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPR--DEIRVAKAILESLKGSVS---SQVEMET-VLQY 265 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~il~~l~~~~~---~~~~~~~-~~~~ 265 (961)
.+..+|.++|++|+||||++..++.... ...+ .++.+.. +.+ ...+.++.....++.... ...+... +...
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 3468999999999999998888876321 2223 3334442 222 223344555666554321 1122222 2233
Q ss_pred HHHHhcCCceEEEeecccCCC-ChhhHHHHHHhccCCCCCcEEEEe
Q 037574 266 INEFVQGKKVLLVLDDVWWNA-CPRYWEQLMYSLKSGSEGSRILVT 310 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~-~~~~~~~l~~~l~~~~~gs~ilvT 310 (961)
+........=+|++|..-... +...++.+........+...++|.
T Consensus 215 i~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl 260 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVG 260 (336)
T ss_pred HHHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEee
Confidence 333222222388899884111 234455554443332333344443
No 344
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.32 E-value=0.11 Score=51.01 Aligned_cols=124 Identities=16% Similarity=0.131 Sum_probs=69.3
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeC-------------------CCC-----------------
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSAS-------------------CPR----------------- 236 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s-------------------~~~----------------- 236 (961)
.-.|++|+|+.|+|||||.+.+..=+.+ =.+.+||.-. |.|
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~---~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~ 103 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEEP---DSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV 103 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcCC---CCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence 3469999999999999999999663222 1344444310 111
Q ss_pred --------CHHHHHHHHHHHhcCCC-----CCc-ccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccC-C
Q 037574 237 --------DEIRVAKAILESLKGSV-----SSQ-VEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKS-G 301 (961)
Q Consensus 237 --------~~~~~~~~il~~l~~~~-----~~~-~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~-~ 301 (961)
..++...++++.++... +.. +.-++-.-.|.+.|.-++-++.||..-.--|++....+...... .
T Consensus 104 ~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA 183 (240)
T COG1126 104 KVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLA 183 (240)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHH
Confidence 12233344444443321 111 22233334577777778889999998544566666665555443 2
Q ss_pred CCCcEEEEecCCCccccc
Q 037574 302 SEGSRILVTRRGEKNGTN 319 (961)
Q Consensus 302 ~~gs~ilvTtR~~~v~~~ 319 (961)
..|-.+||.|....-|..
T Consensus 184 ~eGmTMivVTHEM~FAr~ 201 (240)
T COG1126 184 EEGMTMIIVTHEMGFARE 201 (240)
T ss_pred HcCCeEEEEechhHHHHH
Confidence 345556666655544443
No 345
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.31 E-value=0.088 Score=51.78 Aligned_cols=25 Identities=32% Similarity=0.619 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
...+|.|+|++|+||||+|+.+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3459999999999999999999883
No 346
>PRK07667 uridine kinase; Provisional
Probab=95.31 E-value=0.033 Score=55.68 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=29.1
Q ss_pred HHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhC
Q 037574 172 KKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 172 ~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.+.+.+.+.... +...+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~--------~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHK--------ENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcC--------CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 355666665443 4458999999999999999999987
No 347
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=95.31 E-value=0.15 Score=52.41 Aligned_cols=53 Identities=11% Similarity=0.063 Sum_probs=33.7
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCcccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEKNGT 318 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~ 318 (961)
+.+.+-..+-+++||+--..-|....+.+...+... ..|..||++|.+...+.
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~ 213 (224)
T TIGR02324 160 IARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRE 213 (224)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 444455567799999885444566666666665542 23667888887766443
No 348
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.30 E-value=0.091 Score=52.56 Aligned_cols=120 Identities=18% Similarity=0.110 Sum_probs=60.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChh---hhcc--Cc----------eeEEEEeCCC-CCHHHHHHHHHHHhcCCCCCcc
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSD---VKAN--FD----------KRIWVSASCP-RDEIRVAKAILESLKGSVSSQV 257 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~--F~----------~~~wv~~s~~-~~~~~~~~~il~~l~~~~~~~~ 257 (961)
-.+++|+|..|.|||||++.++.... ..+. |+ .+.|+.-... +....+...+.-..... .-+
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~LS 110 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--GLS 110 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHh--cCC
Confidence 36899999999999999999985310 1110 11 1222221111 11111112211100000 111
Q ss_pred cHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCc
Q 037574 258 EMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEK 315 (961)
Q Consensus 258 ~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~ 315 (961)
.-+...-.+.+.+..++-++++|+--..-|......+...+... ..|..||++|.+..
T Consensus 111 gGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 111 VEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred HHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 11222333455566677899999885444555555555555432 23667888877654
No 349
>PTZ00035 Rad51 protein; Provisional
Probab=95.30 E-value=0.12 Score=56.30 Aligned_cols=59 Identities=17% Similarity=0.164 Sum_probs=40.9
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhh---hc-cCceeEEEEeCCCCCHHHHHHHHHHHhcC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDV---KA-NFDKRIWVSASCPRDEIRVAKAILESLKG 251 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~-~F~~~~wv~~s~~~~~~~~~~~il~~l~~ 251 (961)
+.-.++.|+|.+|+|||||+..++-.... .. .=..++|++....|..++ +.++++.++.
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~ 178 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGL 178 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCC
Confidence 45689999999999999999998753221 11 123567999877777776 4455666543
No 350
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.28 E-value=0.16 Score=51.45 Aligned_cols=55 Identities=13% Similarity=0.120 Sum_probs=34.4
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCcccccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEKNGTNM 320 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~~~ 320 (961)
+...+-..+-++++|+--..-|....+.+...+... ..|..||++|.+......+
T Consensus 140 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~ 195 (204)
T PRK13538 140 LARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASD 195 (204)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccC
Confidence 444555677899999885445566666666655432 2355678887766554443
No 351
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=95.28 E-value=0.13 Score=52.90 Aligned_cols=53 Identities=17% Similarity=0.106 Sum_probs=34.9
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCcccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEKNGT 318 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~ 318 (961)
+...+-..+-++++|+--..-|....+.+...+... ..|..||++|.+.....
T Consensus 135 laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~ 188 (223)
T TIGR03740 135 IAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQ 188 (223)
T ss_pred HHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 445555677899999886445566666666665542 23667888888776543
No 352
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.28 E-value=0.082 Score=54.28 Aligned_cols=53 Identities=15% Similarity=0.158 Sum_probs=34.4
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCcccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNGT 318 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 318 (961)
+...+..++-+++||+.-..-|....+.+...+.....+..||++|.+...+.
T Consensus 144 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~ 196 (220)
T cd03263 144 LAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAE 196 (220)
T ss_pred HHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence 44455667889999998644556666666666654333467888887766443
No 353
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.27 E-value=0.061 Score=52.64 Aligned_cols=22 Identities=41% Similarity=0.661 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 037574 196 VIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999884
No 354
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.27 E-value=0.12 Score=52.52 Aligned_cols=53 Identities=21% Similarity=0.154 Sum_probs=33.3
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCcccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEKNGT 318 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~ 318 (961)
+.+.+..++-+++||+--..-|....+.+...+... ..|..||++|.+.....
T Consensus 145 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~ 198 (211)
T cd03225 145 IAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLL 198 (211)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 444555667799999885444555556666655432 23667888887765443
No 355
>PRK10867 signal recognition particle protein; Provisional
Probab=95.26 E-value=0.08 Score=59.33 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=21.6
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
..+.+|.++|.+|+||||.+..++.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3468999999999999998888776
No 356
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.23 E-value=0.016 Score=56.36 Aligned_cols=91 Identities=21% Similarity=0.249 Sum_probs=52.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhh-ccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcC
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVK-ANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQG 272 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 272 (961)
..++.+.|+.|+|||.||+.+.+ .+. +.....+-++++........ ..++..+....... .. ..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~~~~~-~~~~~~l~~~~~~~---------v~---~~ 67 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYSEGDDV-ESSVSKLLGSPPGY---------VG---AE 67 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCSHHHC-SCHCHHHHHHTTCH---------HH---HH
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcccccchH-Hhhhhhhhhcccce---------ee---cc
Confidence 46789999999999999999988 444 44455666666654441111 11111111110000 00 01
Q ss_pred CceEEEeecccCCCCh-----------hhHHHHHHhccC
Q 037574 273 KKVLLVLDDVWWNACP-----------RYWEQLMYSLKS 300 (961)
Q Consensus 273 kr~LlVlDdvw~~~~~-----------~~~~~l~~~l~~ 300 (961)
..-+|+||++. ..+. ..|..+...+..
T Consensus 68 ~~gVVllDEid-Ka~~~~~~~~~v~~~~V~~~LL~~le~ 105 (171)
T PF07724_consen 68 EGGVVLLDEID-KAHPSNSGGADVSGEGVQNSLLQLLEG 105 (171)
T ss_dssp HHTEEEEETGG-GCSHTTTTCSHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHh-hccccccccchhhHHHHHHHHHHHhcc
Confidence 11299999996 5566 678888877754
No 357
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.15 Score=61.44 Aligned_cols=124 Identities=19% Similarity=0.240 Sum_probs=74.9
Q ss_pred ccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHH
Q 037574 164 EFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAK 243 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 243 (961)
.++|.++....|.+.+.....+-. .+.....+.+.|+.|+|||-||+.+.. .+-+..+..+-++.|.. ..
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~--~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse~------~e 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLK--DPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSEF------QE 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccC--CCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhhh------hh
Confidence 467888888888888776542210 012467788999999999999999987 34334444455554432 22
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHhcCCce-EEEeecccCCCChhhHHHHHHhccCC
Q 037574 244 AILESLKGSVSSQVEMETVLQYINEFVQGKKV-LLVLDDVWWNACPRYWEQLMYSLKSG 301 (961)
Q Consensus 244 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdvw~~~~~~~~~~l~~~l~~~ 301 (961)
...+.+..+.-. ..+....|.+.++.++| +|.||||. ..+.+....+...+..+
T Consensus 633 --vskligsp~gyv-G~e~gg~LteavrrrP~sVVLfdeIE-kAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 633 --VSKLIGSPPGYV-GKEEGGQLTEAVKRRPYSVVLFEEIE-KAHPDVLNILLQLLDRG 687 (898)
T ss_pred --hhhccCCCcccc-cchhHHHHHHHHhcCCceEEEEechh-hcCHHHHHHHHHHHhcC
Confidence 233322221111 12233467777777777 55579995 55666666666676654
No 358
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.22 E-value=0.21 Score=48.13 Aligned_cols=118 Identities=15% Similarity=0.181 Sum_probs=65.0
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCcee--EEEEeCCCCCHHHHHHHHHHHh-----cCCC----CC-ccc---
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFDKR--IWVSASCPRDEIRVAKAILESL-----KGSV----SS-QVE--- 258 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~--~wv~~s~~~~~~~~~~~il~~l-----~~~~----~~-~~~--- 258 (961)
...|-|++..|.||||.|..+.-.. ....+... =|+--.........+..+ .+ +... .+ ..+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra-~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRA-LGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHH-HHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHH
Confidence 4688899999999999998887632 22333221 133333233444444332 11 1100 01 111
Q ss_pred HHHHHHHHHHHhc-CCceEEEeecccC--CCChhhHHHHHHhccCCCCCcEEEEecCCC
Q 037574 259 METVLQYINEFVQ-GKKVLLVLDDVWW--NACPRYWEQLMYSLKSGSEGSRILVTRRGE 314 (961)
Q Consensus 259 ~~~~~~~l~~~l~-~kr~LlVlDdvw~--~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 314 (961)
..+..+..++.+. ++-=|||||.+-. +...-..+.+...+.....+..||+|-|+.
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 1223333444444 4445999999820 012234556777777777788999999977
No 359
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.38 Score=56.18 Aligned_cols=138 Identities=17% Similarity=0.172 Sum_probs=77.1
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhc
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQ 271 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 271 (961)
...+.+.++|++|.|||.||+.+++ ....+| +.+... . ++....+ .....+.+.+....+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~--~~~~~f-----i~v~~~----~----l~sk~vG-----esek~ir~~F~~A~~ 333 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRF-----ISVKGS----E----LLSKWVG-----ESEKNIRELFEKARK 333 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHh--hCCCeE-----EEeeCH----H----Hhccccc-----hHHHHHHHHHHHHHc
Confidence 4456899999999999999999999 344444 333221 1 1111111 112223333334445
Q ss_pred CCceEEEeecccC-----CCC-----hhhHHHHHHhccCCC--CCcEEEEecCCCcccccc-cccccccCCCCCcceeec
Q 037574 272 GKKVLLVLDDVWW-----NAC-----PRYWEQLMYSLKSGS--EGSRILVTRRGEKNGTNM-TEIGLGEKDGTNMTEIGL 338 (961)
Q Consensus 272 ~kr~LlVlDdvw~-----~~~-----~~~~~~l~~~l~~~~--~gs~ilvTtR~~~v~~~~-~~~~~~~~~~~~~~~~~l 338 (961)
..+++|++|++.. ..+ .....++...+.... .+-.||-||......... -.. +.-...+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~------gRfd~~i~v 407 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRP------GRFDRLIYV 407 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhccc------CccceEeec
Confidence 7899999999931 111 123344444444322 333345555544433311 110 011167888
Q ss_pred CCCChHHHHHHHHHHHc
Q 037574 339 GELSAKECRSLFRQIAF 355 (961)
Q Consensus 339 ~~L~~~~~~~Lf~~~~~ 355 (961)
.+-+.++..+.|+.+.-
T Consensus 408 ~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 408 PLPDLEERLEIFKIHLR 424 (494)
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 99999999999999874
No 360
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.16 E-value=0.067 Score=53.98 Aligned_cols=84 Identities=23% Similarity=0.353 Sum_probs=51.4
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCC-CHHHHHHHHHHHhcC-------CCCCcccHH----
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPR-DEIRVAKAILESLKG-------SVSSQVEME---- 260 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~il~~l~~-------~~~~~~~~~---- 260 (961)
+-..++|+|..|+|||+|+..+.+.. .-+.++++.+.+.. ++.++.+++...-.. ...+.....
T Consensus 14 ~Gqr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 14 RGQRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred cCCEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 34679999999999999999998843 22345778777653 445555555433110 011111111
Q ss_pred -----HHHHHHHHHhcCCceEEEeecc
Q 037574 261 -----TVLQYINEFVQGKKVLLVLDDV 282 (961)
Q Consensus 261 -----~~~~~l~~~l~~kr~LlVlDdv 282 (961)
...++++. +++.+|+++||+
T Consensus 90 ~~~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 90 PYTALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHHH--TTSEEEEEEETH
T ss_pred hccchhhhHHHhh--cCCceeehhhhh
Confidence 12333333 699999999999
No 361
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.13 E-value=0.1 Score=52.59 Aligned_cols=120 Identities=15% Similarity=0.076 Sum_probs=64.1
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCh--h-hhc--cCc--------------e-eEEEEeCCCCCH--HHHHHHHHHHhcC
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDS--D-VKA--NFD--------------K-RIWVSASCPRDE--IRVAKAILESLKG 251 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~--~-~~~--~F~--------------~-~~wv~~s~~~~~--~~~~~~il~~l~~ 251 (961)
-.+++|+|..|.|||||.+.+.... . ..+ .|+ . +.++. +.... .....+++....
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~--q~~~~~~~~~~~~~l~~~~- 102 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAF--QYPPEIPGVKNADFLRYVN- 102 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEee--cChhhccCccHHHHHhhcc-
Confidence 4689999999999999999998741 1 011 000 0 11221 11100 011112221111
Q ss_pred CCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCcccc
Q 037574 252 SVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEKNGT 318 (961)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~ 318 (961)
..-+.-+...-.+.+.+..++-++++|+--..-|....+.+...+... ..|..||++|.+.....
T Consensus 103 --~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 103 --EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 111222233334556666778899999985444555566665555432 23667888887766544
No 362
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.11 E-value=0.16 Score=55.72 Aligned_cols=111 Identities=18% Similarity=0.127 Sum_probs=65.7
Q ss_pred ccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHH
Q 037574 164 EFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAK 243 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 243 (961)
.++|+++....+...+... +-+.+.|.+|+|||+||+.+.. ..... .++|.+.......+++.
T Consensus 25 ~~~g~~~~~~~~l~a~~~~------------~~vll~G~PG~gKT~la~~lA~--~l~~~---~~~i~~t~~l~p~d~~G 87 (329)
T COG0714 25 VVVGDEEVIELALLALLAG------------GHVLLEGPPGVGKTLLARALAR--ALGLP---FVRIQCTPDLLPSDLLG 87 (329)
T ss_pred eeeccHHHHHHHHHHHHcC------------CCEEEECCCCccHHHHHHHHHH--HhCCC---eEEEecCCCCCHHHhcC
Confidence 3888888888877776642 3488999999999999999998 34433 35566666666665544
Q ss_pred HHHHHhcC---CCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccC
Q 037574 244 AILESLKG---SVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKS 300 (961)
Q Consensus 244 ~il~~l~~---~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~ 300 (961)
...-.... ......+. . ....-+.++++|.++ ...+..-..+...+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~g-----p---l~~~~~~ill~DEIn-ra~p~~q~aLl~~l~e 138 (329)
T COG0714 88 TYAYAALLLEPGEFRFVPG-----P---LFAAVRVILLLDEIN-RAPPEVQNALLEALEE 138 (329)
T ss_pred chhHhhhhccCCeEEEecC-----C---cccccceEEEEeccc-cCCHHHHHHHHHHHhC
Confidence 43333211 00000000 0 001112589999997 4455555555555543
No 363
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=95.10 E-value=0.09 Score=53.08 Aligned_cols=55 Identities=16% Similarity=0.086 Sum_probs=35.5
Q ss_pred HHHHHhcCCceEEEeecccCCCChhhHH-HHHHhccCCCC--CcEEEEecCCCccccc
Q 037574 265 YINEFVQGKKVLLVLDDVWWNACPRYWE-QLMYSLKSGSE--GSRILVTRRGEKNGTN 319 (961)
Q Consensus 265 ~l~~~l~~kr~LlVlDdvw~~~~~~~~~-~l~~~l~~~~~--gs~ilvTtR~~~v~~~ 319 (961)
.+.+.+..++-++++|+.-..-+....+ .+...+..... |..||++|.+......
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~ 188 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA 188 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh
Confidence 3555667788999999986444555555 56555544322 5568888877765543
No 364
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.09 E-value=0.11 Score=52.87 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=32.8
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNG 317 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 317 (961)
+...+..++-+++||+--..-|...-+.+...+.....+..||++|.+....
T Consensus 141 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~ 192 (211)
T cd03264 141 IAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDV 192 (211)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH
Confidence 4455566788999998853445555555665555433345678888766644
No 365
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.18 Score=50.04 Aligned_cols=60 Identities=12% Similarity=0.042 Sum_probs=37.1
Q ss_pred HHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccC-CCCCcEEEEecCCCcccccccc
Q 037574 263 LQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKS-GSEGSRILVTRRGEKNGTNMTE 322 (961)
Q Consensus 263 ~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~-~~~gs~ilvTtR~~~v~~~~~~ 322 (961)
...+.+.+-=++-+.|||....--|.+....+...+.. ...|+-+||.|..+.++.....
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~p 212 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKP 212 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCC
Confidence 33444455556789999988644455555555544443 2346677777777777776643
No 366
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.09 E-value=0.088 Score=59.02 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.4
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
..+.++.++|.+|+||||.|..++..
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHH
Confidence 34679999999999999999888773
No 367
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.08 E-value=0.18 Score=47.45 Aligned_cols=87 Identities=15% Similarity=0.076 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHhcCCCC------CcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhcc--CCCCCcEE
Q 037574 236 RDEIRVAKAILESLKGSVS------SQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLK--SGSEGSRI 307 (961)
Q Consensus 236 ~~~~~~~~~il~~l~~~~~------~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~--~~~~gs~i 307 (961)
.+.....+..+++++.... +-..-++-.-.|.+.+...+-+++-|.--.+-|...=+.+...+- ....|+..
T Consensus 121 ~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~Tl 200 (228)
T COG4181 121 ADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTL 200 (228)
T ss_pred ccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceE
Confidence 4566678888888876531 223345555567888889999999997654445555555544432 23468888
Q ss_pred EEecCCCcccccccc
Q 037574 308 LVTRRGEKNGTNMTE 322 (961)
Q Consensus 308 lvTtR~~~v~~~~~~ 322 (961)
++.|.++.+|..|..
T Consensus 201 VlVTHD~~LA~Rc~R 215 (228)
T COG4181 201 VLVTHDPQLAARCDR 215 (228)
T ss_pred EEEeCCHHHHHhhhh
Confidence 888899998887764
No 368
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.07 E-value=0.16 Score=51.76 Aligned_cols=52 Identities=17% Similarity=0.146 Sum_probs=32.7
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEKNG 317 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~ 317 (961)
+...+..++-++++|+--..-|....+.+...+... ..|..||++|.+....
T Consensus 139 la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~ 191 (210)
T cd03269 139 FIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELV 191 (210)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
Confidence 445555667799999885444555555555555432 2366788888776543
No 369
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.07 E-value=0.0077 Score=61.24 Aligned_cols=89 Identities=24% Similarity=0.259 Sum_probs=60.0
Q ss_pred cCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCC-CcccCCcc
Q 037574 569 YNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNN-KIKKLPKT 647 (961)
Q Consensus 569 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~-~i~~lp~~ 647 (961)
..++.++.+++.+|. ..+..-+..++.+++.|++|+|+.|.- .+.+..+| ..+.+|+.|-|.++. ..+..-..
T Consensus 68 ~~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~L--~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~ 141 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNSL--SSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSS 141 (418)
T ss_pred HHhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCcC--CCccccCc---ccccceEEEEEcCCCCChhhhhhh
Confidence 346778888888775 122222455678999999999999841 12234444 246689999998876 13345566
Q ss_pred hhccCCCcEeecCCCC
Q 037574 648 LCELYNLQTLELSWCS 663 (961)
Q Consensus 648 i~~L~~L~~L~l~~~~ 663 (961)
+..++.++.|+++.|+
T Consensus 142 l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 142 LDDLPKVTELHMSDNS 157 (418)
T ss_pred hhcchhhhhhhhccch
Confidence 7788888888888764
No 370
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.02 E-value=0.21 Score=51.11 Aligned_cols=54 Identities=20% Similarity=0.159 Sum_probs=33.4
Q ss_pred HHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCcccc
Q 037574 265 YINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEKNGT 318 (961)
Q Consensus 265 ~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~ 318 (961)
.+.+.+..++=+++||+--..-|....+.+...+... ..|..||++|.+.....
T Consensus 148 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~ 202 (216)
T TIGR00960 148 AIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVE 202 (216)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 3455566677899999885444555555555555432 23566888887765443
No 371
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=95.01 E-value=0.25 Score=49.65 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCC
Q 037574 194 LPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
-.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 26 GEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999764
No 372
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.01 E-value=0.14 Score=53.83 Aligned_cols=53 Identities=19% Similarity=0.186 Sum_probs=33.7
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC--CCCcEEEEecCCCcccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG--SEGSRILVTRRGEKNGT 318 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~ 318 (961)
+...+..++-+++||+--..-|......+...+... ..|..||++|.+...+.
T Consensus 139 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~ 193 (255)
T PRK11248 139 IARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAV 193 (255)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 444555677899999885444555556666655542 23667888887766443
No 373
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.01 E-value=0.18 Score=50.94 Aligned_cols=51 Identities=10% Similarity=0.121 Sum_probs=32.4
Q ss_pred HHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCc
Q 037574 265 YINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEK 315 (961)
Q Consensus 265 ~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~ 315 (961)
.+.+.+..++=+++||+--..-|....+.+...+... ..|..||++|.+..
T Consensus 135 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~ 186 (201)
T cd03231 135 ALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL 186 (201)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 3445555667799999885444566666666666432 23667888877554
No 374
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.00 E-value=0.16 Score=52.25 Aligned_cols=53 Identities=9% Similarity=-0.017 Sum_probs=35.2
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC--CCCcEEEEecCCCcccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG--SEGSRILVTRRGEKNGT 318 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~ 318 (961)
+.+.+..++-+++||+--..-|....+.+...+... ..|..||++|.+.....
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~ 202 (225)
T PRK10247 148 LIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN 202 (225)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH
Confidence 455556677899999885445566666666666542 23667888887766544
No 375
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.97 E-value=0.03 Score=57.27 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 037574 196 VIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.|.|+|++|+||||+|+.+.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999977
No 376
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.97 E-value=0.15 Score=51.95 Aligned_cols=51 Identities=18% Similarity=0.188 Sum_probs=32.9
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC--CCCcEEEEecCCCcc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG--SEGSRILVTRRGEKN 316 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v 316 (961)
+.+.+..++-+++||+--..-|......+...+... ..|..||++|.+...
T Consensus 141 la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 193 (213)
T cd03259 141 LARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEE 193 (213)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH
Confidence 445556678899999885444555556666666542 236678888876653
No 377
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.42 Score=54.71 Aligned_cols=62 Identities=21% Similarity=0.223 Sum_probs=39.6
Q ss_pred CCCccccchHHHHHHHHHHhCCCCCCcC---CCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccC
Q 037574 161 DPLEFHGRNVEKKNILQLLKGESSDEES---GSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANF 224 (961)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 224 (961)
.-.++=|-++-+.++-+.+..+-.+.+. -+-...+-|..+|++|.|||++|+.+.+. -+..|
T Consensus 432 ~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne--~~~nF 496 (693)
T KOG0730|consen 432 SWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE--AGMNF 496 (693)
T ss_pred ChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh--hcCCe
Confidence 3345667777777666555433211100 01145678999999999999999999994 34444
No 378
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.94 E-value=0.2 Score=52.01 Aligned_cols=55 Identities=16% Similarity=0.117 Sum_probs=36.3
Q ss_pred HHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCccccc
Q 037574 265 YINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNGTN 319 (961)
Q Consensus 265 ~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~ 319 (961)
.+.+.+..++-+++||+-...-|....+.+...+.....|..||++|.+......
T Consensus 147 ~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~ 201 (236)
T cd03253 147 AIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN 201 (236)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh
Confidence 3455566778899999986555666666666666543336678888877665443
No 379
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.93 E-value=0.099 Score=52.04 Aligned_cols=45 Identities=18% Similarity=0.193 Sum_probs=30.1
Q ss_pred EEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHH
Q 037574 196 VIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKA 244 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 244 (961)
++.|.|.+|+|||+||.++....- + .=..++|++... +...+.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~-~-~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL-A-RGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH-H-CCCcEEEEECCC--CHHHHHHH
Confidence 367999999999999999877422 2 224577887654 34444433
No 380
>PRK06547 hypothetical protein; Provisional
Probab=94.93 E-value=0.03 Score=54.57 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.3
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
....+|+|.|+.|+||||+|+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999999873
No 381
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=94.92 E-value=0.21 Score=51.27 Aligned_cols=52 Identities=17% Similarity=0.144 Sum_probs=34.5
Q ss_pred HHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCcc
Q 037574 265 YINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEKN 316 (961)
Q Consensus 265 ~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v 316 (961)
.+.+.+..++-++++|+--..-|....+.+...+... ..|..||++|.+...
T Consensus 123 ~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~ 175 (223)
T TIGR03771 123 LVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQ 175 (223)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 4555666778899999885445566666666666542 246678888877653
No 382
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.90 E-value=0.22 Score=50.44 Aligned_cols=52 Identities=15% Similarity=0.100 Sum_probs=33.5
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEKNG 317 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~ 317 (961)
+.+.+..++-+++||+--..-|....+.+...+... ..|..||++|.+....
T Consensus 137 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~ 189 (205)
T cd03226 137 IAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFL 189 (205)
T ss_pred HHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 444555677899999885445566666666666542 3466788888766543
No 383
>PRK06217 hypothetical protein; Validated
Probab=94.90 E-value=0.081 Score=52.45 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 037574 196 VIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
.|.|.|++|+||||+|+.+.+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 384
>PRK04328 hypothetical protein; Provisional
Probab=94.90 E-value=0.12 Score=54.10 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=31.4
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCP 235 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 235 (961)
+.-.++.|.|.+|+|||+||.++.... . ..-...+|++....
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~-~-~~ge~~lyis~ee~ 62 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGVYVALEEH 62 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHH-H-hcCCcEEEEEeeCC
Confidence 456899999999999999999987632 2 22356788887653
No 385
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.89 E-value=0.13 Score=54.28 Aligned_cols=88 Identities=15% Similarity=0.185 Sum_probs=48.0
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCH--HHHHHHHHHHhcCCC---CCcccH-HHHHHH
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDE--IRVAKAILESLKGSV---SSQVEM-ETVLQY 265 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~--~~~~~~il~~l~~~~---~~~~~~-~~~~~~ 265 (961)
...+++.++|++|+||||++..++.. ....-..+.+++... +.. .+-++...+..+... ....+. ......
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 44689999999999999999999863 332223455565442 322 233333444443221 111122 222344
Q ss_pred HHHHhcCCceEEEeecc
Q 037574 266 INEFVQGKKVLLVLDDV 282 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdv 282 (961)
+........=++++|-.
T Consensus 147 l~~~~~~~~D~ViIDT~ 163 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTA 163 (272)
T ss_pred HHHHHHCCCCEEEEeCC
Confidence 44434444457888877
No 386
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=94.89 E-value=0.24 Score=51.97 Aligned_cols=123 Identities=13% Similarity=0.070 Sum_probs=64.2
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhh-hc--cCc---------eeEEEEeCCC----CCHH------------HHHHHH
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDV-KA--NFD---------KRIWVSASCP----RDEI------------RVAKAI 245 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~--~F~---------~~~wv~~s~~----~~~~------------~~~~~i 245 (961)
-.+++|+|..|+|||||++.+..-... .+ .|+ .+.|+.-... .++. .-..++
T Consensus 38 Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 117 (257)
T PRK11247 38 GQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQA 117 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHH
Confidence 368999999999999999999763211 11 011 1223321100 1111 112233
Q ss_pred HHHhcCCC-----CCc-ccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC--CCCcEEEEecCCCcc
Q 037574 246 LESLKGSV-----SSQ-VEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG--SEGSRILVTRRGEKN 316 (961)
Q Consensus 246 l~~l~~~~-----~~~-~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v 316 (961)
++.++... ... +.-+...-.|...+...+-+++||+--..-|......+...+... ..|..||++|.+...
T Consensus 118 l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~ 196 (257)
T PRK11247 118 LAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSE 196 (257)
T ss_pred HHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 44443321 001 111222233445555667899999885444555555565555432 235677888877654
No 387
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.87 E-value=0.31 Score=51.84 Aligned_cols=54 Identities=20% Similarity=0.151 Sum_probs=37.2
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHh
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESL 249 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l 249 (961)
.-.++.|.|.+|+||||++.+++.... ..+=..++|++... ...++...+...+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 346888999999999999999977422 22124677887655 3456666665554
No 388
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.028 Score=66.40 Aligned_cols=160 Identities=22% Similarity=0.298 Sum_probs=85.9
Q ss_pred ccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhc-cC-----ceeEEEEeCCCCC
Q 037574 164 EFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKA-NF-----DKRIWVSASCPRD 237 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~F-----~~~~wv~~s~~~~ 237 (961)
.++||++|++++++.|..... +-+ .++|.+|+|||++|.-++. ++.. .- +..++.- +
T Consensus 171 PvIGRd~EI~r~iqIL~RR~K--------NNP--vLiGEpGVGKTAIvEGLA~--rIv~g~VP~~L~~~~i~sL-----D 233 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTK--------NNP--VLVGEPGVGKTAIVEGLAQ--RIVNGDVPESLKDKRIYSL-----D 233 (786)
T ss_pred CCcChHHHHHHHHHHHhccCC--------CCC--eEecCCCCCHHHHHHHHHH--HHhcCCCCHHHcCCEEEEe-----c
Confidence 489999999999999987542 222 3579999999999877766 3321 11 1111110 1
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhc-CCceEEEeecccC------CC--ChhhHHHHHHhccCCCCCcEEE
Q 037574 238 EIRVAKAILESLKGSVSSQVEMETVLQYINEFVQ-GKKVLLVLDDVWW------NA--CPRYWEQLMYSLKSGSEGSRIL 308 (961)
Q Consensus 238 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdvw~------~~--~~~~~~~l~~~l~~~~~gs~il 308 (961)
|..-+.+. .-..+.++....+.+.++ .++..|++|.++- .. ..+.-.-++..|..+. --.|=
T Consensus 234 -------~g~LvAGa-kyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe-L~~IG 304 (786)
T COG0542 234 -------LGSLVAGA-KYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE-LRCIG 304 (786)
T ss_pred -------HHHHhccc-cccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC-eEEEE
Confidence 11111121 122345555555555453 4589999999841 00 1222233444444332 22344
Q ss_pred EecCCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHH
Q 037574 309 VTRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQI 353 (961)
Q Consensus 309 vTtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 353 (961)
.||-++ -...+... .+...+++.+.+..-+.+++...++-.
T Consensus 305 ATT~~E-YRk~iEKD---~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 305 ATTLDE-YRKYIEKD---AALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred eccHHH-HHHHhhhc---hHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 444322 11111110 011234588889999999998888654
No 389
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.87 E-value=0.011 Score=35.28 Aligned_cols=19 Identities=42% Similarity=0.845 Sum_probs=9.5
Q ss_pred cceEeccCCCCcccCCcchh
Q 037574 630 LRYLNLSKNNKIKKLPKTLC 649 (961)
Q Consensus 630 Lr~L~L~~~~~i~~lp~~i~ 649 (961)
|++|+|++|. ++.+|.+|+
T Consensus 2 L~~Ldls~n~-l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNN-LTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSE-ESEEGTTTT
T ss_pred ccEEECCCCc-CEeCChhhc
Confidence 4555555554 445554443
No 390
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=94.86 E-value=0.13 Score=53.45 Aligned_cols=53 Identities=15% Similarity=0.135 Sum_probs=34.8
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC--CCCcEEEEecCCCcccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG--SEGSRILVTRRGEKNGT 318 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~ 318 (961)
+...+..++-+++||+.-..-|....+.+...+... ..|..||++|.+...+.
T Consensus 143 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 197 (236)
T TIGR03864 143 IARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIE 197 (236)
T ss_pred HHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHh
Confidence 455556677899999885445566666666666542 23667888887766544
No 391
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.84 E-value=0.19 Score=56.65 Aligned_cols=104 Identities=13% Similarity=0.133 Sum_probs=53.6
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCC-HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcC
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRD-EIRVAKAILESLKGSVSSQVEMETVLQYINEFVQG 272 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 272 (961)
.+++.++|++|+||||++..++........-..+..|+...... ....++...+.++.......+.+++...+.+ +.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LR- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hC-
Confidence 46999999999999999988876322112223566666543211 1122333333343333223334455555544 23
Q ss_pred CceEEEeecccC-CCChhhHHHHHHhcc
Q 037574 273 KKVLLVLDDVWW-NACPRYWEQLMYSLK 299 (961)
Q Consensus 273 kr~LlVlDdvw~-~~~~~~~~~l~~~l~ 299 (961)
..=+||+|..-. ..+....+.+...+.
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~ 326 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIE 326 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 345788886621 122233344554444
No 392
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.82 E-value=0.12 Score=53.12 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCC
Q 037574 194 LPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
-.+++|+|..|+|||||++.++..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999763
No 393
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.82 E-value=0.12 Score=57.19 Aligned_cols=22 Identities=36% Similarity=0.600 Sum_probs=20.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 037574 195 PVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.+++|+|+.|+||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 5899999999999999999854
No 394
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.81 E-value=0.2 Score=47.73 Aligned_cols=22 Identities=41% Similarity=0.838 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 037574 196 VIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
||.|+|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999873
No 395
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.81 E-value=0.16 Score=51.52 Aligned_cols=53 Identities=21% Similarity=0.134 Sum_probs=34.1
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCcccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEKNGT 318 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~ 318 (961)
+...+..++-+++||+--..-|....+.+...+... ..|..||++|.+.....
T Consensus 137 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~ 190 (208)
T cd03268 137 IALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQ 190 (208)
T ss_pred HHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 444555667899999885444556666666555532 24667888887766443
No 396
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.81 E-value=0.12 Score=57.77 Aligned_cols=87 Identities=22% Similarity=0.227 Sum_probs=49.2
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCC------CCCcccH-----HH
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGS------VSSQVEM-----ET 261 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~------~~~~~~~-----~~ 261 (961)
.-..++|+|..|+|||||++.+..... ....++++.-....++.++....+...... ..+.... ..
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 346899999999999999999887322 223444443323345555444444433111 0111111 11
Q ss_pred HHHHHHHHh--cCCceEEEeecc
Q 037574 262 VLQYINEFV--QGKKVLLVLDDV 282 (961)
Q Consensus 262 ~~~~l~~~l--~~kr~LlVlDdv 282 (961)
..-.+.+++ +++.+|+++||+
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 122233333 589999999999
No 397
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.81 E-value=0.26 Score=50.52 Aligned_cols=53 Identities=11% Similarity=0.017 Sum_probs=33.4
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCcccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNGT 318 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 318 (961)
+.+.+..++-+++||+--..-|......+...+.....+..||++|.+.....
T Consensus 151 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~ 203 (220)
T cd03245 151 LARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLD 203 (220)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence 33444556779999988544455666666666654333357888887766543
No 398
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.80 E-value=0.2 Score=52.49 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
.-.+++|+|..|.|||||.+.++.-
T Consensus 25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 25 EGQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4468999999999999999999763
No 399
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.79 E-value=0.95 Score=48.36 Aligned_cols=154 Identities=9% Similarity=0.069 Sum_probs=88.8
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCh---h---hh--ccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDS---D---VK--ANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQY 265 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~---~---~~--~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~ 265 (961)
.++..++|..|.||+++|..+.+.- . +. .|-+-..++..... ....+++.+.
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~--------------------~i~vd~Ir~l 77 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDK--------------------DLSKSEFLSA 77 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCC--------------------cCCHHHHHHH
Confidence 4677799999999999999886621 0 01 11112222221111 1122232222
Q ss_pred HHHHh-----cCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCC-cccccccccccccCCCCCcceeecC
Q 037574 266 INEFV-----QGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGE-KNGTNMTEIGLGEKDGTNMTEIGLG 339 (961)
Q Consensus 266 l~~~l-----~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~~~~~~~~~~~~~~~~~~l~ 339 (961)
+.+.- .+.+-++|+|++. ..+......+...+......+.+|++|.+. .+...+. .+...+++.
T Consensus 78 ~~~~~~~~~~~~~~KvvII~~~e-~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~---------SRc~~~~f~ 147 (299)
T PRK07132 78 INKLYFSSFVQSQKKILIIKNIE-KTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIV---------SRCQVFNVK 147 (299)
T ss_pred HHHhccCCcccCCceEEEEeccc-ccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHH---------hCeEEEECC
Confidence 22210 2577788999985 445566778888888877777777655433 3332211 122889999
Q ss_pred CCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHH
Q 037574 340 ELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKIL 387 (961)
Q Consensus 340 ~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~ 387 (961)
++++++..+.+.... . . .+.++.++...+|.--|+..+
T Consensus 148 ~l~~~~l~~~l~~~~----~-~-----~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 148 EPDQQKILAKLLSKN----K-E-----KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred CCCHHHHHHHHHHcC----C-C-----hhHHHHHHHHcCCHHHHHHHH
Confidence 999999988776541 1 1 123556666677633455553
No 400
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.79 E-value=0.043 Score=55.20 Aligned_cols=121 Identities=12% Similarity=0.123 Sum_probs=60.8
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCc---ccHHHHHHHHHHHh
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQ---VEMETVLQYINEFV 270 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~---~~~~~~~~~l~~~l 270 (961)
..++.|.|+.|.||||+.+.+..-. +-.+. -.+|++.. .. -.+...|+..+....... .....-...+...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la~~--G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMAQI--GCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHHc--CCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 4789999999999999999887532 11111 11222211 11 122333333333221110 11111111122222
Q ss_pred --cCCceEEEeecccCCCChhhH----HHHHHhccCCCCCcEEEEecCCCccccccc
Q 037574 271 --QGKKVLLVLDDVWWNACPRYW----EQLMYSLKSGSEGSRILVTRRGEKNGTNMT 321 (961)
Q Consensus 271 --~~kr~LlVlDdvw~~~~~~~~----~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~ 321 (961)
..++-|+++|.....-+..+. ..+...+.. .|+.+|++|-..+++..+.
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 356789999998422222221 122223332 3789999999888776554
No 401
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.078 Score=54.91 Aligned_cols=79 Identities=19% Similarity=0.330 Sum_probs=47.1
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhh--hccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhc
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDV--KANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQ 271 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 271 (961)
-++|.++|++|.|||+|.+..++.-.+ .+.|....-+.++.. .++..-... ...-+..+.++|.+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sLFSKWFsE------SgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SLFSKWFSE------SGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HHHHHHHhh------hhhHHHHHHHHHHHHHh
Confidence 388999999999999999999996443 345544444444322 222222211 12233455666666666
Q ss_pred CCce--EEEeecc
Q 037574 272 GKKV--LLVLDDV 282 (961)
Q Consensus 272 ~kr~--LlVlDdv 282 (961)
.+.. ++.+|.|
T Consensus 247 d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 247 DRGNLVFVLIDEV 259 (423)
T ss_pred CCCcEEEEEeHHH
Confidence 5543 4456888
No 402
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.15 Score=51.15 Aligned_cols=99 Identities=17% Similarity=0.263 Sum_probs=56.8
Q ss_pred CccccchHHHHHHHHHHhCCCCCCc---CCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEE---SGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEI 239 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 239 (961)
.++-|-.+.++.+.+.+.-+--+.+ .-+-...+-|.++|++|.|||-+|+.|+| +....| +.|-. .
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf-----irvig---s- 245 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF-----IRVIG---S- 245 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE-----Eeehh---H-
Confidence 3466778888777766543211100 00113456788999999999999999999 555444 33211 1
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcC-CceEEEeecc
Q 037574 240 RVAKAILESLKGSVSSQVEMETVLQYINEFVQG-KKVLLVLDDV 282 (961)
Q Consensus 240 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv 282 (961)
+ ++..--+ +-....+.+.+..+. |-++|+||.+
T Consensus 246 e----lvqkyvg------egarmvrelf~martkkaciiffdei 279 (435)
T KOG0729|consen 246 E----LVQKYVG------EGARMVRELFEMARTKKACIIFFDEI 279 (435)
T ss_pred H----HHHHHhh------hhHHHHHHHHHHhcccceEEEEeecc
Confidence 1 1111111 113445556665654 5578888887
No 403
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.81 Score=54.11 Aligned_cols=191 Identities=13% Similarity=0.139 Sum_probs=101.1
Q ss_pred CccccchHHH---HHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHH
Q 037574 163 LEFHGRNVEK---KNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEI 239 (961)
Q Consensus 163 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 239 (961)
.++.|-++.+ ++++++|..+..=. .-+..-++=+.++|++|.|||-||++++-.+. +-|+++|..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~-~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGS---- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQ-ELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGS---- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHH-HcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechH----
Confidence 3577876554 55555665432000 00113457788999999999999999998543 334665532
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHh-cCCceEEEeecccC--------------CCChhhHHHHHHhccCCCCC
Q 037574 240 RVAKAILESLKGSVSSQVEMETVLQYINEFV-QGKKVLLVLDDVWW--------------NACPRYWEQLMYSLKSGSEG 304 (961)
Q Consensus 240 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~--------------~~~~~~~~~l~~~l~~~~~g 304 (961)
+.++.+.+.. ...++.+.... ...++++.+|++.. ++......++..-+......
T Consensus 379 ----EFvE~~~g~~------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~ 448 (774)
T KOG0731|consen 379 ----EFVEMFVGVG------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS 448 (774)
T ss_pred ----HHHHHhcccc------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC
Confidence 1222222211 12222233322 45778888888731 00112233333333333323
Q ss_pred c--EEEEecCCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchH
Q 037574 305 S--RILVTRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPF 382 (961)
Q Consensus 305 s--~ilvTtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PL 382 (961)
. -+|-+|+..++....-.. .+.-...+.++.-+.....++|.-++-..... .+..++++ |+...-|.+=
T Consensus 449 ~~vi~~a~tnr~d~ld~allr-----pGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~---~e~~dl~~-~a~~t~gf~g 519 (774)
T KOG0731|consen 449 KGVIVLAATNRPDILDPALLR-----PGRFDRQIQIDLPDVKGRASILKVHLRKKKLD---DEDVDLSK-LASLTPGFSG 519 (774)
T ss_pred CcEEEEeccCCccccCHHhcC-----CCccccceeccCCchhhhHHHHHHHhhccCCC---cchhhHHH-HHhcCCCCcH
Confidence 3 233355555543321110 01111567778788888889998887443322 34455666 8888888775
Q ss_pred HH
Q 037574 383 AV 384 (961)
Q Consensus 383 ai 384 (961)
|.
T Consensus 520 ad 521 (774)
T KOG0731|consen 520 AD 521 (774)
T ss_pred HH
Confidence 43
No 404
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.76 E-value=0.12 Score=52.96 Aligned_cols=24 Identities=33% Similarity=0.322 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCC
Q 037574 194 LPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
-.+++|+|..|.|||||++.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999863
No 405
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.74 E-value=0.18 Score=51.77 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCC
Q 037574 194 LPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
-.+++|+|..|+|||||++.+...
T Consensus 48 Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 48 GERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999874
No 406
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.73 E-value=0.2 Score=50.82 Aligned_cols=53 Identities=13% Similarity=0.178 Sum_probs=34.7
Q ss_pred HHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCccc
Q 037574 265 YINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEKNG 317 (961)
Q Consensus 265 ~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~ 317 (961)
.+.+.+..++-+++||+--..-|....+.+...+... ..|..||++|.+....
T Consensus 144 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 197 (206)
T TIGR03608 144 ALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA 197 (206)
T ss_pred HHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 3555666778899999885445566666666665532 2366788888776544
No 407
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.73 E-value=0.13 Score=52.48 Aligned_cols=52 Identities=12% Similarity=0.189 Sum_probs=33.9
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC--CCCcEEEEecCCCccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG--SEGSRILVTRRGEKNG 317 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~ 317 (961)
+...+..++-+++||+--..-|....+.+...+... ..|..||++|.+....
T Consensus 139 ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~ 192 (211)
T cd03298 139 LARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDA 192 (211)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 444455667899999885445666666776666542 2366788887766543
No 408
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.72 E-value=0.47 Score=51.19 Aligned_cols=48 Identities=27% Similarity=0.218 Sum_probs=32.8
Q ss_pred eeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHH
Q 037574 335 EIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFA 383 (961)
Q Consensus 335 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLa 383 (961)
++++++++.+|+..++.-..-.+--. ....-+...+++.-..+|+|--
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~-~~~~~~~~~e~~~~~s~GNp~e 305 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLR-SRVDEELVLEKLFLSSNGNPRE 305 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccc-cCCCCHHHHHHHHHhcCCCHHH
Confidence 78999999999999998876332221 1123344566677777999853
No 409
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.71 E-value=0.0036 Score=62.96 Aligned_cols=99 Identities=25% Similarity=0.275 Sum_probs=64.4
Q ss_pred CCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcccCCc--ch
Q 037574 571 QKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKKLPK--TL 648 (961)
Q Consensus 571 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~--~i 648 (961)
+.+.+.|++.+|. .+ --.+..+|+.|+||.|+-|+ +..+ ..+..+++|+.|.|+.|. |..+-+ -+
T Consensus 18 l~~vkKLNcwg~~--L~---DIsic~kMp~lEVLsLSvNk------IssL-~pl~rCtrLkElYLRkN~-I~sldEL~YL 84 (388)
T KOG2123|consen 18 LENVKKLNCWGCG--LD---DISICEKMPLLEVLSLSVNK------ISSL-APLQRCTRLKELYLRKNC-IESLDELEYL 84 (388)
T ss_pred HHHhhhhcccCCC--cc---HHHHHHhcccceeEEeeccc------cccc-hhHHHHHHHHHHHHHhcc-cccHHHHHHH
Confidence 4455666666665 21 11235678888888888873 6655 347778888888888887 666643 35
Q ss_pred hccCCCcEeecCCCCCCccccc-----ccccCCCCcEEE
Q 037574 649 CELYNLQTLELSWCSNLRNLPQ-----GMGKLINLRHVV 682 (961)
Q Consensus 649 ~~L~~L~~L~l~~~~~l~~lP~-----~i~~L~~L~~L~ 682 (961)
.+|++|++|-|..|.....-+. .+.-|++|+.|+
T Consensus 85 knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 85 KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 6788888888877664444332 244577777775
No 410
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.71 E-value=0.21 Score=53.98 Aligned_cols=52 Identities=12% Similarity=0.113 Sum_probs=33.3
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNG 317 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 317 (961)
+...+-+++-+++||+--..-|....+.+...+.....+..||+||.+...+
T Consensus 144 la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~ 195 (301)
T TIGR03522 144 LAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEV 195 (301)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHH
Confidence 4455567788999998854445555555555544433356789999877643
No 411
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.71 E-value=0.25 Score=53.49 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=18.8
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 037574 197 IWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 197 v~I~G~gGiGKTtLa~~v~~~ 217 (961)
+.+.|++|.||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999873
No 412
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=94.69 E-value=0.24 Score=50.51 Aligned_cols=51 Identities=14% Similarity=0.204 Sum_probs=32.8
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC--CCCcEEEEecCCCcc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG--SEGSRILVTRRGEKN 316 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v 316 (961)
+...+..++-++++|+.-..-|....+.+...+... ..|..||++|.+...
T Consensus 139 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~ 191 (213)
T TIGR01277 139 LARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSD 191 (213)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 334455567899999986445566666666666542 236678888876653
No 413
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.69 E-value=0.29 Score=50.19 Aligned_cols=50 Identities=18% Similarity=0.147 Sum_probs=31.6
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC--CCCcEEEEecCCCc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG--SEGSRILVTRRGEK 315 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~ 315 (961)
+.+.+..++-+++||+--..-|...-..+...+... ..|..||++|.+..
T Consensus 142 la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~ 193 (220)
T cd03293 142 LARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID 193 (220)
T ss_pred HHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 445555677899999885444555555566655432 23556777777665
No 414
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.68 E-value=0.032 Score=57.49 Aligned_cols=68 Identities=19% Similarity=0.179 Sum_probs=48.2
Q ss_pred HHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHH
Q 037574 173 KNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILES 248 (961)
Q Consensus 173 ~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~ 248 (961)
.+++..+.... ++..+|+|.|.||+|||||...+......+++=-.++=|.-|.+++--.++.+=.+.
T Consensus 38 ~~ll~~l~p~t--------G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM 105 (323)
T COG1703 38 RELLRALYPRT--------GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRM 105 (323)
T ss_pred HHHHHHHhhcC--------CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhH
Confidence 45666666544 677899999999999999999998865444554556667777777666655544443
No 415
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.68 E-value=0.11 Score=55.56 Aligned_cols=84 Identities=25% Similarity=0.285 Sum_probs=52.4
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CcccHHHHHHHH
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVS-----SQVEMETVLQYI 266 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l 266 (961)
+.-+++-|+|..|+||||||..+.. .....-..++||.....++.. .+++++.+.. .....++.....
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHH
Confidence 4567999999999999999999987 344444578999987776663 4455554321 122345555555
Q ss_pred HHHhc-CCceEEEeecc
Q 037574 267 NEFVQ-GKKVLLVLDDV 282 (961)
Q Consensus 267 ~~~l~-~kr~LlVlDdv 282 (961)
...++ +.--++|+|-|
T Consensus 124 e~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHHHTTSESEEEEE-C
T ss_pred HHHhhcccccEEEEecC
Confidence 55554 44568888987
No 416
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.68 E-value=0.2 Score=51.53 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCchHHHHHHHHhC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.-.+++|+|+.|+|||||.+.++.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 347999999999999999999976
No 417
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.66 E-value=0.19 Score=53.47 Aligned_cols=53 Identities=23% Similarity=0.201 Sum_probs=34.1
Q ss_pred HHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCccc
Q 037574 265 YINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEKNG 317 (961)
Q Consensus 265 ~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~ 317 (961)
.|.+.+..++-+++||+....-|......+...+... ..|..||++|.+.+.+
T Consensus 148 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~ 201 (274)
T PRK13647 148 AIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLA 201 (274)
T ss_pred HHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 3555666778899999986444556666666655432 2366778877766543
No 418
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.65 E-value=0.021 Score=52.75 Aligned_cols=21 Identities=38% Similarity=0.558 Sum_probs=19.3
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 037574 197 IWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 197 v~I~G~gGiGKTtLa~~v~~~ 217 (961)
|.|.|+.|+||||+|+.+.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999883
No 419
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.63 E-value=0.092 Score=57.65 Aligned_cols=85 Identities=22% Similarity=0.343 Sum_probs=50.1
Q ss_pred CccccchHHHHHHHHHHhCC-CC---CCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccC---ceeEEEEeCC-
Q 037574 163 LEFHGRNVEKKNILQLLKGE-SS---DEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANF---DKRIWVSASC- 234 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~-~~---~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~- 234 (961)
..++|.++.++.+.-.+... .. ..+.......+-|.++|++|+|||++|+.+.. .....| +..-+...+.
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~--~l~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH--HhCCeEEEeecceeecCCcc
Confidence 34889998888887666642 00 00000012346789999999999999999988 344333 2222222222
Q ss_pred CCCHHHHHHHHHHHh
Q 037574 235 PRDEIRVAKAILESL 249 (961)
Q Consensus 235 ~~~~~~~~~~il~~l 249 (961)
..+.+.+++.+.+..
T Consensus 90 G~dvE~i~r~l~e~A 104 (441)
T TIGR00390 90 GRDVESMVRDLTDAA 104 (441)
T ss_pred cCCHHHHHHHHHHHH
Confidence 225666666666554
No 420
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.63 E-value=0.25 Score=52.50 Aligned_cols=53 Identities=11% Similarity=0.110 Sum_probs=32.8
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC--CCCcEEEEecCCCcccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG--SEGSRILVTRRGEKNGT 318 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~ 318 (961)
+.+.+-.++-+++||+.-..-|...-..+...+... ..|..||++|.+...+.
T Consensus 153 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~ 207 (269)
T PRK13648 153 IAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAM 207 (269)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHh
Confidence 445555667899999985444555555555555432 23667777777665443
No 421
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.63 E-value=0.024 Score=59.82 Aligned_cols=76 Identities=25% Similarity=0.365 Sum_probs=41.8
Q ss_pred cEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHH-hcCCCCCcccHHHHHHHHHHHhcCC
Q 037574 195 PVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILES-LKGSVSSQVEMETVLQYINEFVQGK 273 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~-l~~~~~~~~~~~~~~~~l~~~l~~k 273 (961)
+-+.++|+.|+|||++++...+... ...| ...-++.+...+...++ .++++ +.......-. --.+|
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~-~~~~-~~~~~~~s~~Tts~~~q-~~ie~~l~k~~~~~~g----------P~~~k 100 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLD-SDKY-LVITINFSAQTTSNQLQ-KIIESKLEKRRGRVYG----------PPGGK 100 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCST-TCCE-EEEEEES-TTHHHHHHH-HCCCTTECECTTEEEE----------EESSS
T ss_pred CcEEEECCCCCchhHHHHhhhccCC-cccc-ceeEeeccCCCCHHHHH-HHHhhcEEcCCCCCCC----------CCCCc
Confidence 4578999999999999999886311 1111 23345555544444333 22222 1111100000 01478
Q ss_pred ceEEEeeccc
Q 037574 274 KVLLVLDDVW 283 (961)
Q Consensus 274 r~LlVlDdvw 283 (961)
+.++++||+-
T Consensus 101 ~lv~fiDDlN 110 (272)
T PF12775_consen 101 KLVLFIDDLN 110 (272)
T ss_dssp EEEEEEETTT
T ss_pred EEEEEecccC
Confidence 9999999993
No 422
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=94.62 E-value=0.45 Score=49.43 Aligned_cols=53 Identities=9% Similarity=0.075 Sum_probs=35.3
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCcccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNGT 318 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 318 (961)
+.+.+..++-+++||+-...-|....+.+...+.....|..||++|.+.....
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~ 201 (237)
T cd03252 149 IARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK 201 (237)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence 44445556779999998645566666666666654334677888888776554
No 423
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.62 E-value=0.2 Score=51.85 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=33.2
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC--CCCcEEEEecCCCccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG--SEGSRILVTRRGEKNG 317 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~ 317 (961)
+...+..++-+++||+--..-|...-..+...+... ..|..||++|.+.+..
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~ 204 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVV 204 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 444555667799999885444555555666666542 2367788888776543
No 424
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.61 E-value=0.35 Score=57.96 Aligned_cols=136 Identities=18% Similarity=0.194 Sum_probs=69.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCc
Q 037574 195 PVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKK 274 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 274 (961)
+-|.|+|++|+|||++|+.+... ....| +.++.+. +. ....+ .....+...+.......+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~--~~~~f---~~is~~~------~~----~~~~g-----~~~~~~~~~f~~a~~~~P 245 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSD------FV----EMFVG-----VGASRVRDMFEQAKKAAP 245 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--cCCCE---EEEehHH------hH----Hhhhc-----ccHHHHHHHHHHHHhcCC
Confidence 34899999999999999999873 33233 2222221 11 11101 111222333333334578
Q ss_pred eEEEeecccCC---------CChhhHHHH-HHhc---cC--CCCCcEEEEecCCCcccccccccccccCCCCCcceeecC
Q 037574 275 VLLVLDDVWWN---------ACPRYWEQL-MYSL---KS--GSEGSRILVTRRGEKNGTNMTEIGLGEKDGTNMTEIGLG 339 (961)
Q Consensus 275 ~LlVlDdvw~~---------~~~~~~~~l-~~~l---~~--~~~gs~ilvTtR~~~v~~~~~~~~~~~~~~~~~~~~~l~ 339 (961)
++|++|+++.- .....++.. ...+ .. ...+.-||.||...+.....-.. .+.-...+.+.
T Consensus 246 ~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~R-----pgRfdr~i~v~ 320 (644)
T PRK10733 246 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLR-----PGRFDRQVVVG 320 (644)
T ss_pred cEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhC-----CcccceEEEcC
Confidence 99999998410 001122222 2222 21 12344556677665533321110 00111567788
Q ss_pred CCChHHHHHHHHHHHc
Q 037574 340 ELSAKECRSLFRQIAF 355 (961)
Q Consensus 340 ~L~~~~~~~Lf~~~~~ 355 (961)
.-+.++-.++++.+..
T Consensus 321 ~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 321 LPDVRGREQILKVHMR 336 (644)
T ss_pred CCCHHHHHHHHHHHhh
Confidence 8888888888887753
No 425
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.60 E-value=0.049 Score=53.66 Aligned_cols=21 Identities=38% Similarity=0.619 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 037574 196 VIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~ 216 (961)
+|+|.|..|+||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 426
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.59 E-value=0.024 Score=45.79 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 037574 196 VIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
+|+|.|..|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999873
No 427
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.58 E-value=0.14 Score=53.62 Aligned_cols=21 Identities=24% Similarity=0.593 Sum_probs=19.3
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 037574 197 IWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 197 v~I~G~gGiGKTtLa~~v~~~ 217 (961)
|.++|.+|+||||+|+.+.+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999999873
No 428
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.58 E-value=0.32 Score=50.22 Aligned_cols=53 Identities=13% Similarity=0.067 Sum_probs=34.3
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCcccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNGT 318 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 318 (961)
|.+.+..++-+++||+-...-|....+.+...+.....|..||++|.+.....
T Consensus 150 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 202 (229)
T cd03254 150 IARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIK 202 (229)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHh
Confidence 44455667789999988644555666666655554334667888887665544
No 429
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.57 E-value=0.21 Score=51.54 Aligned_cols=41 Identities=22% Similarity=0.277 Sum_probs=30.1
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASC 234 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 234 (961)
+.-.++.|.|.+|+||||+|.++.... . ..-..++|++...
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~-~-~~g~~~~~is~e~ 58 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKG-L-RDGDPVIYVTTEE 58 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHH-H-hcCCeEEEEEccC
Confidence 345799999999999999999876532 1 2234678887644
No 430
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=94.56 E-value=0.19 Score=53.49 Aligned_cols=51 Identities=14% Similarity=0.228 Sum_probs=33.2
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCcc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEKN 316 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v 316 (961)
+...+..++-++++|+-...-|......+...+... ..|..||++|.+...
T Consensus 153 laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~ 204 (272)
T PRK15056 153 LARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGS 204 (272)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 444555667899999986455666666666666532 236668888876653
No 431
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.54 E-value=0.25 Score=51.58 Aligned_cols=53 Identities=19% Similarity=0.065 Sum_probs=33.5
Q ss_pred HHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCccc
Q 037574 265 YINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNG 317 (961)
Q Consensus 265 ~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 317 (961)
.+.+.+-.++-+++||+.-..-|......+...+.....+..||++|.+...+
T Consensus 153 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~ 205 (242)
T TIGR03411 153 EIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFV 205 (242)
T ss_pred HHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHH
Confidence 34455566678999999854555666666665555432345778888766543
No 432
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.52 E-value=0.054 Score=49.76 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCC
Q 037574 170 VEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 170 ~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
++..++.+.|...- ..-.+|.+.|.-|.||||+++.+++.
T Consensus 6 ~~t~~l~~~l~~~l--------~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPL--------DFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhC--------CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 44555555555432 23468999999999999999999884
No 433
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.52 E-value=0.25 Score=50.45 Aligned_cols=52 Identities=19% Similarity=0.189 Sum_probs=32.1
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEKNG 317 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~ 317 (961)
+.+.+-.++-+++||+--..-|....+.+...+... ..|..||++|.+....
T Consensus 147 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~ 199 (214)
T cd03292 147 IARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELV 199 (214)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 444555667799999885444555555665555432 2356777777765543
No 434
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=94.52 E-value=0.4 Score=50.01 Aligned_cols=52 Identities=12% Similarity=0.098 Sum_probs=33.6
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEKNG 317 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~ 317 (961)
+.+.+..++-+++||+.-..-|......+...+... ..|..||++|.+....
T Consensus 152 laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 204 (242)
T PRK11124 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVA 204 (242)
T ss_pred HHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 444555667899999886445666666666666542 2356677777766543
No 435
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.52 E-value=0.3 Score=50.56 Aligned_cols=54 Identities=17% Similarity=0.122 Sum_probs=35.2
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC--CCCcEEEEecCCCccccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG--SEGSRILVTRRGEKNGTN 319 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~~ 319 (961)
+...+..++-+++||+--..-|....+.+...+... ..|..||++|.+...+..
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~ 211 (233)
T PRK11629 156 IARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKR 211 (233)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 445556677899999886445566666666666543 246678888877654443
No 436
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.50 E-value=0.029 Score=56.89 Aligned_cols=25 Identities=40% Similarity=0.642 Sum_probs=22.6
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
+...+|+|+|++|+||||||+.+..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 4457999999999999999999987
No 437
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.49 E-value=0.022 Score=51.31 Aligned_cols=28 Identities=29% Similarity=0.579 Sum_probs=19.6
Q ss_pred EEEEcCCCchHHHHHHHHhCChhhhccCce
Q 037574 197 IWILGKEGIGKTALARQVFDDSDVKANFDK 226 (961)
Q Consensus 197 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 226 (961)
|.|+|.+|+||||+|+.+.. .+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCceeE
Confidence 67999999999999999998 56777743
No 438
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.49 E-value=0.028 Score=57.16 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=22.8
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.+..+|+|.|.+|+||||||+.+..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999987
No 439
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.48 E-value=0.17 Score=55.79 Aligned_cols=83 Identities=28% Similarity=0.326 Sum_probs=48.8
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHH
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVS-----SQVEMETVLQYIN 267 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 267 (961)
.-.++.|.|.+|+|||||+.+++.. ....-..++|++.... ...+ +.-++.++.... ...+.+.+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 3469999999999999999999873 3333346777775432 3332 222344443221 1123344444332
Q ss_pred HHhcCCceEEEeeccc
Q 037574 268 EFVQGKKVLLVLDDVW 283 (961)
Q Consensus 268 ~~l~~kr~LlVlDdvw 283 (961)
..+.-+||+|.+.
T Consensus 156 ---~~~~~lVVIDSIq 168 (372)
T cd01121 156 ---ELKPDLVIIDSIQ 168 (372)
T ss_pred ---hcCCcEEEEcchH
Confidence 2356678888873
No 440
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.46 E-value=0.28 Score=49.97 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCC
Q 037574 194 LPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
-.+++|+|..|+|||||++.+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999864
No 441
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.45 E-value=0.17 Score=53.04 Aligned_cols=113 Identities=15% Similarity=0.165 Sum_probs=60.4
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEE---eCCCCCHHHHHHHHHHHhcCCC----CCccc-H--HH
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVS---ASCPRDEIRVAKAILESLKGSV----SSQVE-M--ET 261 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---~s~~~~~~~~~~~il~~l~~~~----~~~~~-~--~~ 261 (961)
....-++|+|+.|.|||||.+.+... +. .....+++. +...... .++......-. ....+ . ..
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~~--~~-~~~G~i~~~g~~v~~~d~~----~ei~~~~~~~~q~~~~~r~~v~~~~~ 181 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLARI--LS-TGISQLGLRGKKVGIVDER----SEIAGCVNGVPQHDVGIRTDVLDGCP 181 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhCc--cC-CCCceEEECCEEeecchhH----HHHHHHhcccccccccccccccccch
Confidence 34568999999999999999999983 22 223334432 1111111 23332221110 00000 0 00
Q ss_pred HHHHHHHHh-cCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCccc
Q 037574 262 VLQYINEFV-QGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNG 317 (961)
Q Consensus 262 ~~~~l~~~l-~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 317 (961)
-...+...+ ...+-++++|.+- ..+.+..+...+. .|..||+||-+..+.
T Consensus 182 k~~~~~~~i~~~~P~villDE~~---~~e~~~~l~~~~~---~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 182 KAEGMMMLIRSMSPDVIVVDEIG---REEDVEALLEALH---AGVSIIATAHGRDVE 232 (270)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCC---cHHHHHHHHHHHh---CCCEEEEEechhHHH
Confidence 011223323 2578899999994 4455555555543 477899999865543
No 442
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.44 E-value=0.71 Score=55.22 Aligned_cols=87 Identities=15% Similarity=0.173 Sum_probs=50.0
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCC-CCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcC
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCP-RDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQG 272 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 272 (961)
..|++++|+.|+||||.+.+++........-..+..++.... ....+-++...+.++.......+.+++...+.+ +++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-LGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-hcC
Confidence 469999999999999999999874322221224455554321 123445555555555444333345555555543 344
Q ss_pred CceEEEeecc
Q 037574 273 KKVLLVLDDV 282 (961)
Q Consensus 273 kr~LlVlDdv 282 (961)
+ =+|++|-.
T Consensus 264 ~-D~VLIDTA 272 (767)
T PRK14723 264 K-HLVLIDTV 272 (767)
T ss_pred C-CEEEEeCC
Confidence 3 36667766
No 443
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=94.43 E-value=0.26 Score=51.20 Aligned_cols=53 Identities=21% Similarity=0.110 Sum_probs=35.0
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC--CCCcEEEEecCCCcccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG--SEGSRILVTRRGEKNGT 318 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~ 318 (961)
+...+..++-+++||+.-..-|....+.+...+... ..|..||++|.+.....
T Consensus 164 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 218 (236)
T cd03267 164 IAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIE 218 (236)
T ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 445556677899999986445566666666666542 23667888888776443
No 444
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.41 E-value=0.048 Score=61.66 Aligned_cols=86 Identities=19% Similarity=0.241 Sum_probs=49.2
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhh-ccCceeEE-EEeCCCCCHHHHHHHHHHHhcC----CCCCc-----ccHH
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVK-ANFDKRIW-VSASCPRDEIRVAKAILESLKG----SVSSQ-----VEME 260 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w-v~~s~~~~~~~~~~~il~~l~~----~~~~~-----~~~~ 260 (961)
+.-....|+|.+|+|||||++.+.+. +. .+-++.++ +-|.+..... .+|-+.+.+ ...+. ....
T Consensus 414 GkGQR~LIvgpp~aGKTtLL~~IAn~--i~~n~~~~~~ivvLIgERpeEV---tdm~rsVkgeVVasT~D~p~~~~~~~a 488 (672)
T PRK12678 414 GKGQRGLIVSPPKAGKTTILQNIANA--ITTNNPECHLMVVLVDERPEEV---TDMQRSVKGEVIASTFDRPPSDHTTVA 488 (672)
T ss_pred ccCCEeEEeCCCCCCHHHHHHHHHHH--HhhcCCCeEEEEEEEeCchhhH---HHHHHhccceEEEECCCCCHHHHHHHH
Confidence 34467899999999999999999883 32 23344443 3455443222 223333321 11111 1122
Q ss_pred HHHHHHHHHh--cCCceEEEeecc
Q 037574 261 TVLQYINEFV--QGKKVLLVLDDV 282 (961)
Q Consensus 261 ~~~~~l~~~l--~~kr~LlVlDdv 282 (961)
.+.-.+.+++ .++.+||++|++
T Consensus 489 ~~ai~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 489 ELAIERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCc
Confidence 2333344444 689999999999
No 445
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.41 E-value=0.17 Score=54.00 Aligned_cols=54 Identities=13% Similarity=0.066 Sum_probs=35.6
Q ss_pred HHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC--CCCcEEEEecCCCcccc
Q 037574 265 YINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG--SEGSRILVTRRGEKNGT 318 (961)
Q Consensus 265 ~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~ 318 (961)
.|.+.+..++-+++||+....-|......+...+... ..|..||++|.+.....
T Consensus 150 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~ 205 (279)
T PRK13650 150 AIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA 205 (279)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 3555566678899999996455666666666666542 23677888887765443
No 446
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=94.40 E-value=0.31 Score=57.50 Aligned_cols=52 Identities=13% Similarity=0.062 Sum_probs=34.1
Q ss_pred HHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCcccc
Q 037574 265 YINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNGT 318 (961)
Q Consensus 265 ~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 318 (961)
.+...+..++-+++||.-...-|...-..+...+.. .|..||++|.+.....
T Consensus 165 ~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~ 216 (530)
T PRK15064 165 LLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLN 216 (530)
T ss_pred HHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHH
Confidence 344555667789999988644556666666666653 3556888887766443
No 447
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=94.39 E-value=0.38 Score=50.56 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCC
Q 037574 194 LPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
-.+++|+|..|.|||||++.++..
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~l~Gl 52 (254)
T PRK10418 29 GRVLALVGGSGSGKSLTCAAALGI 52 (254)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999863
No 448
>PRK13948 shikimate kinase; Provisional
Probab=94.38 E-value=0.23 Score=48.81 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=22.3
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.....|.++|+.|+||||+++.+.+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999987
No 449
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.38 E-value=0.19 Score=52.89 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=30.4
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASC 234 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 234 (961)
+.-.++.|.|.+|+|||++|.++.... .+ .=..+++++...
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~-a~-~Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQ-AS-RGNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHH-Hh-CCCcEEEEEecC
Confidence 456899999999999999999986632 12 224677888754
No 450
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.37 E-value=0.4 Score=54.79 Aligned_cols=121 Identities=12% Similarity=0.058 Sum_probs=63.7
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEE-------E----eCCCCCHHHH------------------HHH
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWV-------S----ASCPRDEIRV------------------AKA 244 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-------~----~s~~~~~~~~------------------~~~ 244 (961)
-.+++|+|..|+|||||++.++..... ..+.+++ . .....++.+. ...
T Consensus 50 GEivgIiGpNGSGKSTLLkiLaGLl~P---~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~e 126 (549)
T PRK13545 50 GEIVGIIGLNGSGKSTLSNLIAGVTMP---NKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPE 126 (549)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCC---CceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHH
Confidence 368999999999999999999874211 1122221 1 1111122111 112
Q ss_pred HHHHhcCCC-----CCcccH-HHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCccc
Q 037574 245 ILESLKGSV-----SSQVEM-ETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEKNG 317 (961)
Q Consensus 245 il~~l~~~~-----~~~~~~-~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~ 317 (961)
+++.++... ....+. +...-.|...+...+-+|+||+--..-|......+...+... ..|..||++|.+....
T Consensus 127 lLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i 206 (549)
T PRK13545 127 IIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQV 206 (549)
T ss_pred HHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence 333332211 111111 222223555566678899999885344555555555555432 2466788888776543
No 451
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.36 E-value=0.16 Score=51.00 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=20.5
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 037574 195 PVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.+++|+|+.|.|||||.+.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999999975
No 452
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.35 E-value=0.22 Score=51.74 Aligned_cols=120 Identities=21% Similarity=0.248 Sum_probs=60.9
Q ss_pred EEEEEcCCCchHHHHHHHHhCChhhhccC---------ce-eEEEEeCCCC-CHHHHHHHHHHHhcCCCC----------
Q 037574 196 VIWILGKEGIGKTALARQVFDDSDVKANF---------DK-RIWVSASCPR-DEIRVAKAILESLKGSVS---------- 254 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---------~~-~~wv~~s~~~-~~~~~~~~il~~l~~~~~---------- 254 (961)
+..|+|++|+|||+||..++-.......| .. +++++...+. .+.+-+..+...++....
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 56789999999999999997631111111 22 3444444332 234444455554321100
Q ss_pred -C-----c---ccHHHHHHHHHHHh-cCCceEEEeecccC-----CCChhhHHHHHHhccC--CCCCcEEEEecCCCc
Q 037574 255 -S-----Q---VEMETVLQYINEFV-QGKKVLLVLDDVWW-----NACPRYWEQLMYSLKS--GSEGSRILVTRRGEK 315 (961)
Q Consensus 255 -~-----~---~~~~~~~~~l~~~l-~~kr~LlVlDdvw~-----~~~~~~~~~l~~~l~~--~~~gs~ilvTtR~~~ 315 (961)
. . .......+.+.+.+ ..+.-+||+|-+-. ..+......+...+.. ...|+.||+++....
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 0 0 01122233333333 45677999996520 1233444445444433 234778888876554
No 453
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.35 E-value=0.022 Score=56.61 Aligned_cols=119 Identities=15% Similarity=0.081 Sum_probs=57.7
Q ss_pred EEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCC---CCcccHHHHHHHHHHHhcC
Q 037574 196 VIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSV---SSQVEMETVLQYINEFVQG 272 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~---~~~~~~~~~~~~l~~~l~~ 272 (961)
++.|+|+.|.||||+.+.+.-.. +-.+-.+.+|.....- ..+..++..++... ........-...+...+..
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~-~la~~G~~v~a~~~~~----~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~ 75 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIV-IMAQIGSFVPAESAEL----PVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKN 75 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHH-HHHHhCCCeeehheEe----cccceEEEEeCCCCchhccccHHHHHHHHHHHHHHh
Confidence 47799999999999999998432 1122222222211000 00111111111111 0111122222234444443
Q ss_pred --CceEEEeecccCCCChhhHHHH----HHhccCCCCCcEEEEecCCCcccccc
Q 037574 273 --KKVLLVLDDVWWNACPRYWEQL----MYSLKSGSEGSRILVTRRGEKNGTNM 320 (961)
Q Consensus 273 --kr~LlVlDdvw~~~~~~~~~~l----~~~l~~~~~gs~ilvTtR~~~v~~~~ 320 (961)
++-++++|..-..-+...-..+ ...+.. ..++.+|++|...++...+
T Consensus 76 ~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 76 ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLA 128 (185)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHh
Confidence 7899999998522333322222 222222 2367899999887766544
No 454
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.34 E-value=0.27 Score=51.21 Aligned_cols=51 Identities=12% Similarity=0.029 Sum_probs=32.7
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC--CCCcEEEEecCCCcc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG--SEGSRILVTRRGEKN 316 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v 316 (961)
+...+..++-+++||+--..-|....+.+...+... ..|..||++|.+...
T Consensus 142 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~ 194 (241)
T PRK14250 142 IARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQ 194 (241)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHH
Confidence 445555677899999885444555566666665542 135677777776654
No 455
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.34 E-value=0.25 Score=50.39 Aligned_cols=51 Identities=14% Similarity=0.133 Sum_probs=32.2
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCcc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEKN 316 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v 316 (961)
+.+.+..++=+++||+--..-|....+.+...+... ..|..||++|.+...
T Consensus 146 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~ 197 (213)
T cd03262 146 IARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGF 197 (213)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 444555667799999885445566666666665532 235667777776553
No 456
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.33 E-value=0.16 Score=56.57 Aligned_cols=86 Identities=17% Similarity=0.200 Sum_probs=51.3
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCC-CHHHHHHHHHHHhcCC-------CCCcccHH----
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPR-DEIRVAKAILESLKGS-------VSSQVEME---- 260 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~il~~l~~~-------~~~~~~~~---- 260 (961)
.-..++|+|..|+|||||++.+++.. ..+.++.+-+.+.. ++.++..+++..-... ..+.....
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 34679999999999999999998732 22456666666554 3344555544331111 11111111
Q ss_pred -HHHHHHHHHh--cCCceEEEeecc
Q 037574 261 -TVLQYINEFV--QGKKVLLVLDDV 282 (961)
Q Consensus 261 -~~~~~l~~~l--~~kr~LlVlDdv 282 (961)
...-.+.+++ +|+.+|+++||+
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCh
Confidence 1122233444 689999999999
No 457
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.33 E-value=0.23 Score=50.97 Aligned_cols=51 Identities=22% Similarity=0.345 Sum_probs=32.5
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCcc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEKN 316 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v 316 (961)
+.+.+-.++-++++|+--..-|....+.+...+... ..|..||++|.+...
T Consensus 143 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 194 (222)
T cd03224 143 IARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARF 194 (222)
T ss_pred HHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 334445567799999885444556666666665432 246778888877654
No 458
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.33 E-value=0.47 Score=49.34 Aligned_cols=53 Identities=13% Similarity=0.061 Sum_probs=34.9
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCcccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNGT 318 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 318 (961)
+...+..++=+++||+....-|....+.+...+.....|..||++|.+.....
T Consensus 150 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~ 202 (238)
T cd03249 150 IARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR 202 (238)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 44445556779999998655566666666666654335667888887766544
No 459
>PRK10908 cell division protein FtsE; Provisional
Probab=94.33 E-value=0.39 Score=49.34 Aligned_cols=53 Identities=17% Similarity=0.077 Sum_probs=32.1
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCcccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEKNGT 318 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~ 318 (961)
+.+.+-.++-+++||+--..-|...-+.+...+... ..|..||++|.+.....
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 201 (222)
T PRK10908 148 IARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLIS 201 (222)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 444555667899999885344555555555554432 23567888887765443
No 460
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.33 E-value=0.26 Score=50.43 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=33.8
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-C-CCcEEEEecCCCcccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-S-EGSRILVTRRGEKNGT 318 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~-~gs~ilvTtR~~~v~~ 318 (961)
+.+.+..++-+++||+--..-|....+.+...+... . .|..||++|.+.....
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 205 (218)
T cd03255 151 IARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE 205 (218)
T ss_pred HHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh
Confidence 445556677899999885444555556666665542 2 3667888887665443
No 461
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.32 E-value=0.047 Score=58.26 Aligned_cols=50 Identities=22% Similarity=0.325 Sum_probs=43.0
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhC
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.+|+|.++.++++++.+...+.+. ..+-+|+.++|+.|.||||||..+-+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~----~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGL----EERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhcc----CccceEEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999998765432 25679999999999999999999977
No 462
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.32 E-value=0.085 Score=54.39 Aligned_cols=87 Identities=28% Similarity=0.369 Sum_probs=52.2
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCC---------------CC-
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSV---------------SS- 255 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~---------------~~- 255 (961)
+.-.++.|.|.+|+|||++|.++.... .+..=+.++||+.... .+.+.+.+ ++++.+. ..
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~-~~~~ge~vlyvs~ee~--~~~l~~~~-~s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNG-LKNFGEKVLYVSFEEP--PEELIENM-KSFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH-HHHHT--EEEEESSS---HHHHHHHH-HTTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHh-hhhcCCcEEEEEecCC--HHHHHHHH-HHcCCcHHHHhhcCCEEEEeccccc
Confidence 456899999999999999999977532 1210235778886544 34444332 2443210 00
Q ss_pred ----cccHHHHHHHHHHHhcC-CceEEEeecc
Q 037574 256 ----QVEMETVLQYINEFVQG-KKVLLVLDDV 282 (961)
Q Consensus 256 ----~~~~~~~~~~l~~~l~~-kr~LlVlDdv 282 (961)
..+.+.+...+.+.++. +...+|+|.+
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 23566677777776643 4478888877
No 463
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=94.32 E-value=0.13 Score=53.31 Aligned_cols=53 Identities=9% Similarity=0.213 Sum_probs=33.2
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC--CCCcEEEEecCCCcccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG--SEGSRILVTRRGEKNGT 318 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~ 318 (961)
+.+.+..++-+++||+--..-|......+...+... ..|..||++|.+.....
T Consensus 140 laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~ 194 (232)
T PRK10771 140 LARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAA 194 (232)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHH
Confidence 334455567799999885444556666666655542 23667888887776443
No 464
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.28 E-value=0.36 Score=50.48 Aligned_cols=53 Identities=19% Similarity=0.071 Sum_probs=33.1
Q ss_pred HHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCcc
Q 037574 264 QYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKN 316 (961)
Q Consensus 264 ~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v 316 (961)
-.+.+.+..++-+++||+.-..-|...-..+...+.....|..||++|.+...
T Consensus 151 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~ 203 (246)
T PRK14269 151 LCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQ 203 (246)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 34555666677899999885344555555555555443336677777776653
No 465
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.27 E-value=0.0022 Score=64.44 Aligned_cols=58 Identities=26% Similarity=0.304 Sum_probs=33.5
Q ss_pred CCCcCceEEeeecCccccccccccccCceEEEEeCCC--CCCcCCCCCCCCccceeeecccc
Q 037574 788 PSNLESMEMFYYRGESISLMMIMLSNKLRSLTLDRCV--NLKQLPGLGGLPSLESLTLRNMK 847 (961)
Q Consensus 788 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~--~~~~l~~l~~lp~L~~L~L~~~~ 847 (961)
.+.|+.|.|+-|...++..+. .+++|++|+|..|. .+..+.-+.++|+|+.|.|..++
T Consensus 40 Mp~lEVLsLSvNkIssL~pl~--rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISSLAPLQ--RCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred cccceeEEeeccccccchhHH--HHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence 356777777766665553333 56677777776651 12223345566777777776543
No 466
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.26 E-value=0.27 Score=50.14 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 037574 196 VIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.|.|+|++|+||||+|+.+..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999976
No 467
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.25 E-value=0.39 Score=50.94 Aligned_cols=51 Identities=10% Similarity=0.086 Sum_probs=33.0
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC--CCCcEEEEecCCCcc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG--SEGSRILVTRRGEKN 316 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v 316 (961)
|...+-.++-+|+||+--..-|....+.+...+... ..|..||++|.+...
T Consensus 171 lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~ 223 (269)
T cd03294 171 LARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDE 223 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 555566677899999885444555556666655432 236678888876653
No 468
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.24 E-value=0.37 Score=47.18 Aligned_cols=120 Identities=14% Similarity=0.095 Sum_probs=65.4
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEe---CCCCCHHHHHHHHHHHh-----cCCC-----CCccc-
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSA---SCPRDEIRVAKAILESL-----KGSV-----SSQVE- 258 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~---s~~~~~~~~~~~il~~l-----~~~~-----~~~~~- 258 (961)
....|.|+|..|-||||.|.-+.-.. ....+ .+..|.. .........+..+ ..+ +... ....+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra-~g~G~-~V~ivQFlKg~~~~GE~~~l~~l-~~v~~~~~g~~~~~~~~~~~e~~ 97 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRA-VGHGK-KVGVVQFIKGAWSTGERNLLEFG-GGVEFHVMGTGFTWETQDRERDI 97 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHH-HHCCC-eEEEEEEecCCCccCHHHHHhcC-CCcEEEECCCCCcccCCCcHHHH
Confidence 34689999999999999998887632 22222 2222322 2123444443332 011 1110 00011
Q ss_pred --HHHHHHHHHHHhc-CCceEEEeecccC--CCChhhHHHHHHhccCCCCCcEEEEecCCCc
Q 037574 259 --METVLQYINEFVQ-GKKVLLVLDDVWW--NACPRYWEQLMYSLKSGSEGSRILVTRRGEK 315 (961)
Q Consensus 259 --~~~~~~~l~~~l~-~kr~LlVlDdvw~--~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 315 (961)
..+..+..++.+. ++-=|||||.+-. +...-..+.+...+.....+..||+|-|+..
T Consensus 98 ~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 98 AAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1222333444444 4555999999820 0122346677777777777889999999773
No 469
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.23 E-value=0.18 Score=52.23 Aligned_cols=51 Identities=18% Similarity=0.214 Sum_probs=31.0
Q ss_pred HHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCc
Q 037574 265 YINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEK 315 (961)
Q Consensus 265 ~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~ 315 (961)
.+...+..++-+++||+--..-|...-+.+...+... ..|..||++|.+..
T Consensus 143 ~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~ 194 (232)
T cd03218 143 EIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR 194 (232)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3445556677899999885334455445555544432 23566888887764
No 470
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.23 E-value=0.22 Score=55.56 Aligned_cols=88 Identities=19% Similarity=0.248 Sum_probs=44.3
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCC-CCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhc
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCP-RDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQ 271 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 271 (961)
...+++++|+.|+||||++..+............+..+..... ....+-+....+.++.......+..++...+.. +.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~-l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHE-LR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHH-hc
Confidence 3479999999999999999988763211222233444443321 122233334444444333222333333333322 33
Q ss_pred CCceEEEeecc
Q 037574 272 GKKVLLVLDDV 282 (961)
Q Consensus 272 ~kr~LlVlDdv 282 (961)
++ -++++|..
T Consensus 269 ~~-d~VLIDTa 278 (420)
T PRK14721 269 GK-HMVLIDTV 278 (420)
T ss_pred CC-CEEEecCC
Confidence 33 34556655
No 471
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.23 E-value=0.4 Score=48.39 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCC
Q 037574 194 LPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
-.+++|+|..|.|||||++.+..-
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhccc
Confidence 368999999999999999999864
No 472
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=94.21 E-value=0.34 Score=51.01 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=33.6
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEKNG 317 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~ 317 (961)
+...+..++-+++||+.-..-|....+.+...+... ..|..||++|.+....
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~ 200 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLA 200 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 444555667899999885444566666666665542 2356788888776644
No 473
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=94.21 E-value=0.093 Score=56.75 Aligned_cols=54 Identities=20% Similarity=0.162 Sum_probs=33.6
Q ss_pred HHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCcccc
Q 037574 265 YINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEKNGT 318 (961)
Q Consensus 265 ~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~ 318 (961)
.+...+-.++-+|+||+--..-|+..-..+...+... ..|..||+||.+...+.
T Consensus 134 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~ 188 (302)
T TIGR01188 134 DIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEAD 188 (302)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHH
Confidence 3445556778899999885344555444454444432 24678899988776443
No 474
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.20 E-value=0.11 Score=56.98 Aligned_cols=85 Identities=22% Similarity=0.325 Sum_probs=50.1
Q ss_pred CccccchHHHHHHHHHHhCC--CC--CCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccC---ceeEEEEeCC-
Q 037574 163 LEFHGRNVEKKNILQLLKGE--SS--DEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANF---DKRIWVSASC- 234 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~--~~--~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~- 234 (961)
..++|.+..++.+..++... .. ...........-|.++|+.|+|||+||+.+... ....| +..-|.....
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~--l~~~fi~vD~t~f~e~Gyv 92 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYV 92 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH--hCChheeecchhhccCCcc
Confidence 35899999999988877531 00 000000012467899999999999999999873 33333 2222222111
Q ss_pred CCCHHHHHHHHHHHh
Q 037574 235 PRDEIRVAKAILESL 249 (961)
Q Consensus 235 ~~~~~~~~~~il~~l 249 (961)
..+...+++.+++..
T Consensus 93 G~d~e~~ir~L~~~A 107 (443)
T PRK05201 93 GRDVESIIRDLVEIA 107 (443)
T ss_pred cCCHHHHHHHHHHHH
Confidence 225566666666554
No 475
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.15 E-value=0.49 Score=49.05 Aligned_cols=54 Identities=13% Similarity=0.017 Sum_probs=35.0
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCccccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNGTN 319 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~ 319 (961)
+.+.+..++=+++||+.-..-|....+.+...+.....|..||++|.+......
T Consensus 149 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 202 (234)
T cd03251 149 IARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN 202 (234)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence 444555667799999885445666666666666543346678888877655443
No 476
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=94.15 E-value=0.31 Score=48.80 Aligned_cols=47 Identities=19% Similarity=0.073 Sum_probs=29.2
Q ss_pred CCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCcccc
Q 037574 272 GKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNGT 318 (961)
Q Consensus 272 ~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 318 (961)
..+-+++||+....-+...-..+...+.....+..||++|.+.....
T Consensus 134 ~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~ 180 (197)
T cd03278 134 RPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTME 180 (197)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHh
Confidence 44578899988534455555555555554333566888887766544
No 477
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.15 E-value=0.39 Score=50.97 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 037574 194 LPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
-.+++|+|..|+|||||++.++.
T Consensus 39 Ge~~~l~G~nGsGKSTLl~~l~G 61 (269)
T PRK14259 39 GKVTALIGPSGCGKSTVLRSLNR 61 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999975
No 478
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.14 E-value=0.26 Score=46.94 Aligned_cols=22 Identities=23% Similarity=0.590 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 037574 196 VIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
++.|+|++|+||||+|+.+.+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999873
No 479
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=94.14 E-value=0.77 Score=44.25 Aligned_cols=54 Identities=13% Similarity=0.076 Sum_probs=35.0
Q ss_pred HHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhcc-CCCCCcEEEEecCCCcc
Q 037574 263 LQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLK-SGSEGSRILVTRRGEKN 316 (961)
Q Consensus 263 ~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~-~~~~gs~ilvTtR~~~v 316 (961)
.-.+.+..-.++-|-|||...-.-|.+.-..+...+. ....|-.||.||-.+-.
T Consensus 138 RvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 138 RVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred HHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 3345556668889999999864445555555554444 34567789999876543
No 480
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.12 E-value=0.2 Score=52.70 Aligned_cols=86 Identities=12% Similarity=0.145 Sum_probs=47.9
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCC-------CCcccHHHHHH
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSV-------SSQVEMETVLQ 264 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~-------~~~~~~~~~~~ 264 (961)
.+..+|.|+|.+|+|||||+..+.+ ....... ++.+. ....+..+ .+.++..+... ....+...+.+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~--~l~~~~~-~~VI~-gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~ 175 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM--RLKDSVP-CAVIE-GDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIAD 175 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HhccCCC-EEEEC-CCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHHH
Confidence 5689999999999999999999988 3333332 22222 22122221 22233433221 11223344455
Q ss_pred HHHHHhcCCceEEEeeccc
Q 037574 265 YINEFVQGKKVLLVLDDVW 283 (961)
Q Consensus 265 ~l~~~l~~kr~LlVlDdvw 283 (961)
.+........=++|++++-
T Consensus 176 Al~~L~~~~~d~liIEnvG 194 (290)
T PRK10463 176 AAPRLPLDDNGILFIENVG 194 (290)
T ss_pred HHHHHhhcCCcEEEEECCC
Confidence 5555444444677889984
No 481
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.12 E-value=0.026 Score=56.91 Aligned_cols=76 Identities=20% Similarity=0.168 Sum_probs=50.7
Q ss_pred cCCCCcceEeccCCCCcccCCcchhccCCCcEeecCCC--CCCcccccccccCCCCcEEEeCCcccccCCcCCCCCCCCC
Q 037574 625 KRLIHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWC--SNLRNLPQGMGKLINLRHVVNVGTPLSYMPKGIERWSCLR 702 (961)
Q Consensus 625 ~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~--~~l~~lP~~i~~L~~L~~L~l~~~~l~~~p~~i~~L~~L~ 702 (961)
-.+..|.+|++.++. ++.+- .+-.|++|+.|.++.| .....++.-..++++|++|+++.|++.- +..+..++.|+
T Consensus 40 d~~~~le~ls~~n~g-ltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~pl~~l~ 116 (260)
T KOG2739|consen 40 DEFVELELLSVINVG-LTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLRPLKELE 116 (260)
T ss_pred ccccchhhhhhhccc-eeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccchhhhhc
Confidence 345567777776665 44432 2446889999999998 5455666666677999999999998754 34444344433
Q ss_pred c
Q 037574 703 T 703 (961)
Q Consensus 703 ~ 703 (961)
.
T Consensus 117 n 117 (260)
T KOG2739|consen 117 N 117 (260)
T ss_pred c
Confidence 3
No 482
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.12 E-value=0.17 Score=56.52 Aligned_cols=87 Identities=23% Similarity=0.232 Sum_probs=48.5
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCC-------CCCcccHHH----
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGS-------VSSQVEMET---- 261 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~-------~~~~~~~~~---- 261 (961)
.-..++|+|..|+|||||++.+..... ....++...-.+...+.++..+.+..-+.. ..+......
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTD---ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 346899999999999999999987422 122222222222334445555444432111 111111111
Q ss_pred -HHHHHHHHh--cCCceEEEeecc
Q 037574 262 -VLQYINEFV--QGKKVLLVLDDV 282 (961)
Q Consensus 262 -~~~~l~~~l--~~kr~LlVlDdv 282 (961)
..-.+.+++ +++.+||++||+
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 122244444 589999999999
No 483
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.11 E-value=0.34 Score=51.95 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=34.0
Q ss_pred HHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCccc
Q 037574 265 YINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEKNG 317 (961)
Q Consensus 265 ~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~ 317 (961)
.|...+..++-+|+||+.-..-|......+...+... ..|..||++|.+...+
T Consensus 154 aiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~ 207 (288)
T PRK13643 154 AIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDV 207 (288)
T ss_pred HHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH
Confidence 3455556677899999885344555566666555432 2366788888876644
No 484
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.07 E-value=0.044 Score=55.36 Aligned_cols=22 Identities=23% Similarity=0.215 Sum_probs=20.5
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 037574 195 PVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.+++|+|+.|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999984
No 485
>PRK03839 putative kinase; Provisional
Probab=94.07 E-value=0.035 Score=54.94 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 037574 196 VIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999883
No 486
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.07 E-value=0.52 Score=49.42 Aligned_cols=52 Identities=12% Similarity=0.024 Sum_probs=32.8
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNG 317 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 317 (961)
+.+.+..++-+++||+--..-|......+...+.....|..||++|.+....
T Consensus 157 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~ 208 (250)
T PRK14247 157 IARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQA 208 (250)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 3444556678999998854445555555655555433356788888776543
No 487
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.06 E-value=0.58 Score=47.26 Aligned_cols=56 Identities=7% Similarity=-0.053 Sum_probs=34.6
Q ss_pred HHHHHHHhcCCceEEEeecccCCCChhhHHHHHH-hccC-CCCCcEEEEecCCCcccc
Q 037574 263 LQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMY-SLKS-GSEGSRILVTRRGEKNGT 318 (961)
Q Consensus 263 ~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~-~l~~-~~~gs~ilvTtR~~~v~~ 318 (961)
.-.+.+.+..++-++++|+--..-|....+.+.. .+.. ...|..||++|.+.....
T Consensus 135 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~ 192 (204)
T cd03250 135 RISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLP 192 (204)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHh
Confidence 3345666777889999998853445555555654 3332 234667788777665444
No 488
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=94.06 E-value=0.06 Score=57.63 Aligned_cols=163 Identities=14% Similarity=0.146 Sum_probs=81.2
Q ss_pred CCCccccchHHHHHHHHHHhCCCCCCcCC-------CCCCccEEEEEcCCCchHHHHHHHHhCChhhh--ccC---ceeE
Q 037574 161 DPLEFHGRNVEKKNILQLLKGESSDEESG-------SKPTLPVIWILGKEGIGKTALARQVFDDSDVK--ANF---DKRI 228 (961)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~F---~~~~ 228 (961)
..-+..|-..+...|.+.........+.. -...-.+++|+|..|+||||+.+.+....... ..| .+.+
T Consensus 369 S~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v 448 (593)
T COG2401 369 SELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKV 448 (593)
T ss_pred eeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCce
Confidence 34455666677777766654322110000 01233689999999999999999987532111 111 1121
Q ss_pred EEE---------eC--CCCCHHHHHHHHHHHh-------------cCCC--------CCcccHHHHHHHHHHHhcCCceE
Q 037574 229 WVS---------AS--CPRDEIRVAKAILESL-------------KGSV--------SSQVEMETVLQYINEFVQGKKVL 276 (961)
Q Consensus 229 wv~---------~s--~~~~~~~~~~~il~~l-------------~~~~--------~~~~~~~~~~~~l~~~l~~kr~L 276 (961)
-|. -+ ..++...++..+.+.. +.++ .+..+.+.-..+|.+.+..+.-+
T Consensus 449 ~vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~ 528 (593)
T COG2401 449 EVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNV 528 (593)
T ss_pred eccccchhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCc
Confidence 111 11 1222223333332222 2111 11112222345677777888889
Q ss_pred EEeecccCCCChhhHHHHHHhccCC--CCCcEEEEecCCCccccccccc
Q 037574 277 LVLDDVWWNACPRYWEQLMYSLKSG--SEGSRILVTRRGEKNGTNMTEI 323 (961)
Q Consensus 277 lVlDdvw~~~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~~~~~~ 323 (961)
++.|.....-|...-..+..-+... ..|+.+++.|+.+++.+.+..+
T Consensus 529 ~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD 577 (593)
T COG2401 529 LLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPD 577 (593)
T ss_pred EEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCc
Confidence 9999874122222222233333332 2577777777778877766543
No 489
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.05 E-value=0.043 Score=54.73 Aligned_cols=24 Identities=25% Similarity=0.560 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCchHHHHHHHHhC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
..++|.|+|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999986
No 490
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.05 E-value=0.29 Score=49.22 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=22.7
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
....+|+|+|++|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999987
No 491
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=94.04 E-value=0.33 Score=50.84 Aligned_cols=54 Identities=9% Similarity=-0.034 Sum_probs=32.4
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccC-CCCCcEEEEecCCCccccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKS-GSEGSRILVTRRGEKNGTN 319 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~-~~~gs~ilvTtR~~~v~~~ 319 (961)
+.+.+..++-+++||+--..-|...-+.+...+.. ...|..||++|.+......
T Consensus 156 laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~ 210 (248)
T PRK09580 156 ILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDY 210 (248)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 44555567789999988534445544555544432 1235678888877654443
No 492
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.03 E-value=0.36 Score=55.72 Aligned_cols=225 Identities=16% Similarity=0.048 Sum_probs=0.0
Q ss_pred HhhcccCcHHHHHHHHHHHhhhHhhhhhHHHHHHHHHHHHhhccccccccccccccccCcchhhhhHHHHHHHHHHHHHH
Q 037574 52 AEKRQVKEKAVEDWLRELKDTSYAIDDTLDEWNTAIQKLLLANETDHKASKVRSFTCHLPIALRFDIGCKLKNLSRRVDA 131 (961)
Q Consensus 52 a~~~~~~~~~~~~wl~~l~~~~~d~ed~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~~l~~ 131 (961)
.+.+.....+...--++.+...-..++.++.+...+ ...+-.....++++++..+...
T Consensus 239 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~----------------------~~~k~a~sr~k~l~k~~~~~~~ 296 (530)
T COG0488 239 LEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAA----------------------SKAKKAKSRIKRLEKLEARLAE 296 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------------chHHHHHHHHHHHHHHHhhhhh
Q ss_pred HHhcccCCCccccCCCCCcccccCccccCCCCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHH
Q 037574 132 IAGKKGGFEFKLMSGPGEKIIIMTSSEAIDPLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALA 211 (961)
Q Consensus 132 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa 211 (961)
.............-.+.................-++-. ..|.+-+.-.- ..-..|+|+|+.|+|||||.
T Consensus 297 ~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~---~~l~~~~s~~i--------~~g~riaiiG~NG~GKSTLl 365 (530)
T COG0488 297 ERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG---RLLLKDLSFRI--------DRGDRIAIVGPNGAGKSTLL 365 (530)
T ss_pred cccccccccceeeccCCcccCCCeeEEEeccccccCCC---ceeecCceEEe--------cCCCEEEEECCCCCCHHHHH
Q ss_pred HHH--------------------hCChhhhccC---ceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCc-------ccHHH
Q 037574 212 RQV--------------------FDDSDVKANF---DKRIWVSASCPRDEIRVAKAILESLKGSVSSQ-------VEMET 261 (961)
Q Consensus 212 ~~v--------------------~~~~~~~~~F---~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~-------~~~~~ 261 (961)
+.+ |-+.....-+ ...-|+.-..........+..+..++-..... +.-+.
T Consensus 366 k~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk 445 (530)
T COG0488 366 KLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEK 445 (530)
T ss_pred HHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHH
Q ss_pred HHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEe
Q 037574 262 VLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVT 310 (961)
Q Consensus 262 ~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvT 310 (961)
..-.+...+-.++=+||||.=-++-|.+..+.+...+.... |+.|+|+
T Consensus 446 ~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~-Gtvl~VS 493 (530)
T COG0488 446 ARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE-GTVLLVS 493 (530)
T ss_pred HHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC-CeEEEEe
No 493
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.03 E-value=0.21 Score=56.10 Aligned_cols=89 Identities=17% Similarity=0.222 Sum_probs=54.0
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCC-CHHHHHHHHHHHhcCC-------CCCcccHH----
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPR-DEIRVAKAILESLKGS-------VSSQVEME---- 260 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~il~~l~~~-------~~~~~~~~---- 260 (961)
.-..++|.|..|+|||||+..+....... +=+.++++-+.+.. .+.+++.++...=... ..+.....
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 44679999999999999999987642211 11356677776544 4455666665432111 11221111
Q ss_pred -HHHHHHHHHh---cCCceEEEeecc
Q 037574 261 -TVLQYINEFV---QGKKVLLVLDDV 282 (961)
Q Consensus 261 -~~~~~l~~~l---~~kr~LlVlDdv 282 (961)
...-.+.+++ +++.+||++||+
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecch
Confidence 1223345555 689999999999
No 494
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.01 E-value=0.13 Score=57.91 Aligned_cols=89 Identities=17% Similarity=0.181 Sum_probs=55.4
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCC-CHHHHHHHHHHHhcCC-------CCCcccH-----
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPR-DEIRVAKAILESLKGS-------VSSQVEM----- 259 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~il~~l~~~-------~~~~~~~----- 259 (961)
+-..++|.|..|+|||||+.++.+... +.+-+.++++-+.+.. .+.++..++...-... ..+....
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 446899999999999999999887532 2355777787776543 4455555555431111 1111111
Q ss_pred HHHHHHHHHHh---cCCceEEEeecc
Q 037574 260 ETVLQYINEFV---QGKKVLLVLDDV 282 (961)
Q Consensus 260 ~~~~~~l~~~l---~~kr~LlVlDdv 282 (961)
....-.+.+++ +++.+||++||+
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccc
Confidence 11233344555 389999999999
No 495
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=93.99 E-value=0.096 Score=54.42 Aligned_cols=52 Identities=10% Similarity=0.096 Sum_probs=33.7
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC--CCCcEEEEecCCCccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG--SEGSRILVTRRGEKNG 317 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~ 317 (961)
+.+.+..++-++++|+.-..-|....+.+...+... ..|..||++|.+...+
T Consensus 141 laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~ 194 (237)
T TIGR00968 141 LARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEA 194 (237)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 444455667899999885445666666666666542 2266788888766643
No 496
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.97 E-value=0.26 Score=51.40 Aligned_cols=51 Identities=18% Similarity=0.207 Sum_probs=31.6
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC--CCCcEEEEecCCCcc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG--SEGSRILVTRRGEKN 316 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v 316 (961)
+...+-.++-+++||+.-..-|...-+.+...+... ..|..||++|.+...
T Consensus 146 laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~ 198 (242)
T cd03295 146 VARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDE 198 (242)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH
Confidence 444455667799999885444555555555555542 236678888876653
No 497
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.96 E-value=0.34 Score=54.96 Aligned_cols=87 Identities=13% Similarity=0.146 Sum_probs=45.0
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCC-CCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcC
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCP-RDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQG 272 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 272 (961)
..|++++|+.|+||||++.+++.....+..-..+..|+.... ....+-++...+.++.......+..+....+. .+.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~-~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALS-ELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHH-hccC
Confidence 479999999999999999999873222222223455554321 12233344444444433221112222222222 2334
Q ss_pred CceEEEeecc
Q 037574 273 KKVLLVLDDV 282 (961)
Q Consensus 273 kr~LlVlDdv 282 (961)
+ -.+++|-.
T Consensus 335 ~-d~VLIDTa 343 (484)
T PRK06995 335 K-HIVLIDTI 343 (484)
T ss_pred C-CeEEeCCC
Confidence 3 46677776
No 498
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=93.96 E-value=0.18 Score=55.18 Aligned_cols=55 Identities=16% Similarity=0.080 Sum_probs=35.4
Q ss_pred HHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC--CCCcEEEEecCCCccccc
Q 037574 265 YINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG--SEGSRILVTRRGEKNGTN 319 (961)
Q Consensus 265 ~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~~ 319 (961)
.|.+.+...+-+|++|+.-..-|...-..+...+... ..|..||++|.+.+++..
T Consensus 150 ~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~ 206 (343)
T TIGR02314 150 AIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKR 206 (343)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 3555666778899999985444555555565555542 236678888877765543
No 499
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=93.96 E-value=2.3 Score=45.10 Aligned_cols=71 Identities=13% Similarity=0.133 Sum_probs=48.2
Q ss_pred cCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCC-cccccccccccccCCCCCcceeecCCCChHHHHHH
Q 037574 271 QGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGE-KNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSL 349 (961)
Q Consensus 271 ~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~L 349 (961)
.+++-++|+||+. .........+...+.....++.+|++|.+. .+...+.. +...+.+.+ +.++..+.
T Consensus 102 ~~~~kV~II~~ad-~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~S---------Rcq~i~f~~-~~~~~~~~ 170 (290)
T PRK07276 102 EGKQQVFIIKDAD-KMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKS---------RTQIFHFPK-NEAYLIQL 170 (290)
T ss_pred cCCcEEEEeehhh-hcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHH---------cceeeeCCC-cHHHHHHH
Confidence 3566799999996 566778888998998877777777777554 34333321 227788876 66666666
Q ss_pred HHH
Q 037574 350 FRQ 352 (961)
Q Consensus 350 f~~ 352 (961)
+..
T Consensus 171 L~~ 173 (290)
T PRK07276 171 LEQ 173 (290)
T ss_pred HHH
Confidence 654
No 500
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.95 E-value=0.17 Score=58.99 Aligned_cols=45 Identities=16% Similarity=0.170 Sum_probs=35.0
Q ss_pred ccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhC
Q 037574 164 EFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.++|....+.++.+.+...+ ..-.-|.|+|..|+||+++|+.+.+
T Consensus 205 ~~ig~s~~~~~~~~~~~~~A--------~~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 205 QIVAVSPKMRQVVEQARKLA--------MLDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred ceeECCHHHHHHHHHHHHHh--------CCCCCEEEECCCCccHHHHHHHHHH
Confidence 58999888888887765433 1223478999999999999999865
Done!