Query 037574
Match_columns 961
No_of_seqs 453 out of 4057
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 23:45:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037574.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037574hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 4.1E-48 1.4E-52 453.6 28.0 317 166-530 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 3.1E-39 1.1E-43 379.0 22.0 285 165-522 130-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 2.5E-38 8.5E-43 412.5 25.6 320 159-528 120-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.2E-34 4E-39 345.5 26.3 317 161-526 122-450 (591)
5 4eco_A Uncharacterized protein 99.9 3.3E-23 1.1E-27 247.8 17.3 346 546-937 204-598 (636)
6 4ecn_A Leucine-rich repeat pro 99.9 1E-22 3.6E-27 247.3 19.7 347 546-938 446-839 (876)
7 4ecn_A Leucine-rich repeat pro 99.9 2.7E-22 9.2E-27 243.7 15.5 354 547-938 322-818 (876)
8 4eco_A Uncharacterized protein 99.9 2E-22 6.9E-27 241.0 13.6 354 548-938 81-578 (636)
9 3vq2_A TLR4, TOLL-like recepto 99.9 3.4E-21 1.2E-25 230.6 22.7 365 545-937 29-435 (606)
10 3t6q_A CD180 antigen; protein- 99.9 2.4E-21 8.3E-26 231.8 20.6 364 545-937 30-460 (606)
11 3v47_A TOLL-like receptor 5B a 99.9 3.8E-21 1.3E-25 221.6 20.5 354 546-937 28-406 (455)
12 2z81_A CD282 antigen, TOLL-lik 99.9 3.9E-21 1.3E-25 227.2 20.1 360 546-937 24-508 (549)
13 4fmz_A Internalin; leucine ric 99.9 2.4E-20 8.1E-25 206.5 22.0 301 547-937 43-344 (347)
14 2z63_A TOLL-like receptor 4, v 99.8 4.7E-21 1.6E-25 227.7 17.2 145 546-701 26-175 (570)
15 3o6n_A APL1; leucine-rich repe 99.8 1.2E-20 4.2E-25 212.4 19.1 303 570-937 43-350 (390)
16 3rgz_A Protein brassinosteroid 99.8 1E-21 3.5E-26 240.7 10.9 60 548-609 294-353 (768)
17 1o6v_A Internalin A; bacterial 99.8 3.9E-20 1.3E-24 213.3 23.0 319 549-937 47-386 (466)
18 4fmz_A Internalin; leucine ric 99.8 1.4E-20 4.8E-25 208.4 18.3 299 568-959 40-341 (347)
19 3t6q_A CD180 antigen; protein- 99.8 3E-20 1E-24 222.3 20.4 139 546-695 55-198 (606)
20 3oja_B Anopheles plasmodium-re 99.8 2.4E-20 8.2E-25 221.8 18.4 303 570-937 49-356 (597)
21 1ziw_A TOLL-like receptor 3; i 99.8 4.5E-20 1.5E-24 224.0 20.9 151 545-705 22-177 (680)
22 3rgz_A Protein brassinosteroid 99.8 6.8E-21 2.3E-25 233.4 12.9 278 547-854 268-556 (768)
23 2z63_A TOLL-like receptor 4, v 99.8 2.9E-20 9.9E-25 220.9 17.4 132 547-689 51-190 (570)
24 3vq2_A TLR4, TOLL-like recepto 99.8 6.8E-20 2.3E-24 219.3 20.6 149 546-705 54-210 (606)
25 2z7x_B TOLL-like receptor 1, v 99.8 1.2E-19 4.2E-24 212.7 22.1 128 546-688 19-150 (520)
26 3j0a_A TOLL-like receptor 5; m 99.8 1.6E-19 5.6E-24 223.5 23.5 302 546-883 22-372 (844)
27 2id5_A Lingo-1, leucine rich r 99.8 7.7E-20 2.6E-24 211.8 17.9 147 547-704 31-181 (477)
28 2z7x_B TOLL-like receptor 1, v 99.8 6.9E-20 2.4E-24 214.8 17.2 137 551-705 3-144 (520)
29 1o6v_A Internalin A; bacterial 99.8 1.9E-19 6.6E-24 207.5 19.0 314 569-937 43-364 (466)
30 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2E-19 6.9E-24 212.6 18.6 140 786-937 350-508 (562)
31 3j0a_A TOLL-like receptor 5; m 99.8 4.4E-19 1.5E-23 219.6 20.3 339 553-936 9-391 (844)
32 3o6n_A APL1; leucine-rich repe 99.8 3.3E-19 1.1E-23 200.6 17.3 302 547-914 44-350 (390)
33 3v47_A TOLL-like receptor 5B a 99.8 1.2E-18 4.3E-23 200.5 22.3 341 552-937 14-382 (455)
34 2id5_A Lingo-1, leucine rich r 99.8 1.9E-19 6.6E-24 208.5 15.5 270 551-853 14-288 (477)
35 2z81_A CD282 antigen, TOLL-lik 99.8 6.8E-19 2.3E-23 207.9 20.5 325 547-915 49-509 (549)
36 3bz5_A Internalin-J, INLJ; leu 99.8 7.2E-19 2.5E-23 200.9 19.5 252 547-853 41-303 (457)
37 3oja_B Anopheles plasmodium-re 99.8 3.7E-19 1.3E-23 211.6 15.4 303 547-914 50-356 (597)
38 4g8a_A TOLL-like receptor 4; l 99.8 1.7E-18 5.8E-23 208.5 19.5 136 545-691 49-188 (635)
39 1ziw_A TOLL-like receptor 3; i 99.8 2.4E-18 8.2E-23 208.8 20.5 273 552-852 8-287 (680)
40 3bz5_A Internalin-J, INLJ; leu 99.8 2.4E-18 8.1E-23 196.7 19.2 309 567-935 37-348 (457)
41 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3.4E-18 1.1E-22 202.2 20.1 128 546-688 50-181 (562)
42 2ft3_A Biglycan; proteoglycan, 99.8 6.1E-18 2.1E-22 185.7 20.2 292 549-914 34-331 (332)
43 1ogq_A PGIP-2, polygalacturona 99.8 1.9E-18 6.4E-23 187.7 12.8 244 548-847 50-302 (313)
44 4fcg_A Uncharacterized protein 99.8 7.8E-18 2.7E-22 183.9 17.0 90 597-694 79-169 (328)
45 4fcg_A Uncharacterized protein 99.7 4.6E-18 1.6E-22 185.7 11.0 135 547-693 80-223 (328)
46 1xku_A Decorin; proteoglycan, 99.7 9.9E-17 3.4E-21 175.9 21.1 292 549-913 32-329 (330)
47 1ogq_A PGIP-2, polygalacturona 99.7 6.7E-18 2.3E-22 183.3 10.2 222 572-846 50-278 (313)
48 1jl5_A Outer protein YOPM; leu 99.7 6.2E-17 2.1E-21 184.7 16.0 330 547-937 10-368 (454)
49 1jl5_A Outer protein YOPM; leu 99.7 8.1E-16 2.8E-20 175.5 22.3 303 546-938 89-408 (454)
50 2ft3_A Biglycan; proteoglycan, 99.7 2.5E-16 8.7E-21 172.7 17.1 241 546-847 52-305 (332)
51 4g8a_A TOLL-like receptor 4; l 99.7 2E-16 7E-21 190.3 14.7 131 562-705 44-179 (635)
52 3qfl_A MLA10; coiled-coil, (CC 99.7 2.3E-17 7.8E-22 146.8 4.3 79 6-88 2-83 (115)
53 1xku_A Decorin; proteoglycan, 99.7 9.8E-16 3.3E-20 167.9 17.9 242 546-847 50-304 (330)
54 3ogk_B Coronatine-insensitive 99.6 7.7E-18 2.6E-22 200.9 -0.9 134 547-684 111-251 (592)
55 2z66_A Variable lymphocyte rec 99.6 8.5E-16 2.9E-20 166.5 13.2 223 572-846 28-258 (306)
56 2z80_A TOLL-like receptor 2, v 99.6 1.6E-15 5.3E-20 168.0 13.9 245 572-846 52-311 (353)
57 2qen_A Walker-type ATPase; unk 99.6 1.5E-14 5.2E-19 159.9 21.7 303 159-521 8-348 (350)
58 1w5s_A Origin recognition comp 99.6 4.4E-15 1.5E-19 168.3 17.6 311 162-500 21-372 (412)
59 3g06_A SSPH2 (leucine-rich rep 99.6 7.4E-15 2.5E-19 172.7 20.0 255 549-884 41-295 (622)
60 3zyi_A Leucine-rich repeat-con 99.6 4.3E-15 1.5E-19 170.3 17.5 219 572-846 75-300 (452)
61 2z80_A TOLL-like receptor 2, v 99.6 1.1E-15 3.6E-20 169.3 11.5 255 546-824 50-312 (353)
62 3o53_A Protein LRIM1, AGAP0063 99.6 1.1E-16 3.8E-21 174.2 3.3 273 592-943 27-303 (317)
63 3zyj_A Leucine-rich repeat-con 99.6 6.1E-15 2.1E-19 168.4 17.7 237 551-846 46-289 (440)
64 3zyj_A Leucine-rich repeat-con 99.6 2.1E-15 7.3E-20 172.2 13.9 150 545-705 61-213 (440)
65 3g06_A SSPH2 (leucine-rich rep 99.6 1.3E-14 4.4E-19 170.6 20.5 256 572-914 40-295 (622)
66 3zyi_A Leucine-rich repeat-con 99.6 3.9E-15 1.3E-19 170.7 14.7 150 545-705 72-224 (452)
67 1ozn_A Reticulon 4 receptor; N 99.6 3.4E-15 1.2E-19 159.9 11.2 141 551-704 14-158 (285)
68 3o53_A Protein LRIM1, AGAP0063 99.6 1.6E-15 5.6E-20 164.9 6.8 266 568-917 30-300 (317)
69 2z66_A Variable lymphocyte rec 99.6 9E-15 3.1E-19 158.4 12.0 229 546-824 26-259 (306)
70 3ogk_B Coronatine-insensitive 99.6 7.2E-16 2.5E-20 183.8 3.7 153 549-705 139-299 (592)
71 2p1m_B Transport inhibitor res 99.6 1.3E-16 4.5E-21 190.3 -3.0 156 547-704 104-270 (594)
72 2fna_A Conserved hypothetical 99.6 9.7E-14 3.3E-18 153.9 20.4 301 160-521 10-356 (357)
73 1wwl_A Monocyte differentiatio 99.5 1.7E-15 5.8E-20 164.3 2.3 77 626-704 93-178 (312)
74 3oja_A Leucine-rich immune mol 99.5 4.1E-15 1.4E-19 171.4 5.6 103 789-913 169-272 (487)
75 1z7x_W Ribonuclease inhibitor; 99.5 1.7E-16 5.7E-21 183.0 -6.2 137 548-689 28-183 (461)
76 1h6u_A Internalin H; cell adhe 99.5 4.3E-14 1.5E-18 152.8 12.2 64 787-854 171-234 (308)
77 1ozn_A Reticulon 4 receptor; N 99.5 4.7E-14 1.6E-18 150.9 12.2 206 545-802 29-238 (285)
78 3oja_A Leucine-rich immune mol 99.5 6.1E-14 2.1E-18 161.6 11.5 210 573-847 35-248 (487)
79 2z62_A TOLL-like receptor 4, v 99.5 1E-13 3.5E-18 147.5 11.1 149 546-705 26-179 (276)
80 1z7x_W Ribonuclease inhibitor; 99.5 5E-15 1.7E-19 170.6 -0.1 279 547-847 2-324 (461)
81 2xwt_C Thyrotropin receptor; s 99.5 7.5E-13 2.6E-17 137.4 15.9 102 817-939 134-239 (239)
82 2p1m_B Transport inhibitor res 99.4 6.5E-15 2.2E-19 175.6 -1.2 130 548-681 130-270 (594)
83 2xwt_C Thyrotropin receptor; s 99.4 2.7E-13 9.3E-18 140.8 9.9 96 600-702 32-130 (239)
84 1wwl_A Monocyte differentiatio 99.4 4.2E-14 1.4E-18 153.3 3.8 245 595-913 39-306 (312)
85 2v1u_A Cell division control p 99.4 2.5E-11 8.5E-16 136.0 26.0 302 162-500 18-352 (387)
86 1p9a_G Platelet glycoprotein I 99.4 7.4E-13 2.5E-17 141.5 11.9 122 568-704 6-129 (290)
87 2z62_A TOLL-like receptor 4, v 99.4 8.6E-13 2.9E-17 140.3 12.2 123 572-705 28-155 (276)
88 1fnn_A CDC6P, cell division co 99.4 1.8E-11 6E-16 137.4 22.2 306 162-501 16-353 (389)
89 2o6q_A Variable lymphocyte rec 99.4 2.3E-12 7.8E-17 136.4 13.9 143 549-705 17-163 (270)
90 2ast_B S-phase kinase-associat 99.4 1.2E-13 4.3E-18 151.6 4.2 65 620-685 110-177 (336)
91 2ast_B S-phase kinase-associat 99.4 1.1E-13 3.7E-18 152.1 3.5 101 573-686 48-152 (336)
92 1h6u_A Internalin H; cell adhe 99.4 6.8E-12 2.3E-16 135.4 17.3 192 547-803 40-231 (308)
93 4ay9_X Follicle-stimulating ho 99.4 2.2E-12 7.4E-17 142.2 13.6 89 599-693 30-121 (350)
94 1p9a_G Platelet glycoprotein I 99.4 5.3E-12 1.8E-16 134.8 15.1 144 547-705 9-154 (290)
95 2qby_B CDC6 homolog 3, cell di 99.4 5.5E-11 1.9E-15 133.0 23.9 300 162-501 19-341 (384)
96 2o6q_A Variable lymphocyte rec 99.3 9.1E-12 3.1E-16 131.8 14.8 149 546-705 35-187 (270)
97 4glp_A Monocyte differentiatio 99.3 3E-12 1E-16 138.6 11.0 225 572-845 64-303 (310)
98 3m19_A Variable lymphocyte rec 99.3 1.1E-11 3.8E-16 129.5 14.9 149 546-705 33-185 (251)
99 4ezg_A Putative uncharacterize 99.3 7.1E-12 2.4E-16 125.6 11.9 143 547-705 43-187 (197)
100 1h6t_A Internalin B; cell adhe 99.3 4.8E-12 1.6E-16 135.3 11.0 83 597-690 44-126 (291)
101 4glp_A Monocyte differentiatio 99.3 6.8E-12 2.3E-16 135.8 12.2 156 548-713 91-262 (310)
102 3rfs_A Internalin B, repeat mo 99.3 3E-12 1E-16 135.7 9.1 112 568-693 37-150 (272)
103 2ca6_A RAN GTPase-activating p 99.3 4.5E-13 1.5E-17 150.1 2.1 247 563-846 23-313 (386)
104 3rfs_A Internalin B, repeat mo 99.3 5E-12 1.7E-16 133.9 9.9 144 547-705 40-187 (272)
105 1m9s_A Internalin B; cell inva 99.3 5.7E-12 1.9E-16 148.0 10.8 83 597-690 41-123 (605)
106 4ay9_X Follicle-stimulating ho 99.3 1.7E-11 6E-16 134.9 13.9 54 789-845 202-255 (350)
107 2ca6_A RAN GTPase-activating p 99.3 1E-12 3.5E-17 147.1 3.9 241 547-825 31-315 (386)
108 2ell_A Acidic leucine-rich nuc 99.3 9.5E-12 3.3E-16 121.2 9.3 135 546-693 22-164 (168)
109 2qby_A CDC6 homolog 1, cell di 99.3 1.1E-10 3.8E-15 130.6 19.4 304 161-499 18-348 (386)
110 3e6j_A Variable lymphocyte rec 99.3 2.4E-11 8.1E-16 124.9 12.7 139 552-704 23-164 (229)
111 1njg_A DNA polymerase III subu 99.2 1.8E-10 6E-15 119.9 18.9 197 163-390 23-230 (250)
112 3e6j_A Variable lymphocyte rec 99.2 5.1E-11 1.7E-15 122.4 13.7 135 545-690 37-173 (229)
113 3m19_A Variable lymphocyte rec 99.2 3.9E-11 1.3E-15 125.4 12.8 143 549-705 15-161 (251)
114 2v9t_B SLIT homolog 2 protein 99.2 4E-11 1.4E-15 122.3 11.6 140 552-705 15-158 (220)
115 1h6t_A Internalin B; cell adhe 99.2 1.3E-10 4.5E-15 124.1 15.5 140 547-705 45-184 (291)
116 2ell_A Acidic leucine-rich nuc 99.2 5.3E-11 1.8E-15 115.9 10.4 131 569-710 21-158 (168)
117 2v70_A SLIT-2, SLIT homolog 2 99.2 8.6E-11 3E-15 119.8 12.3 142 551-705 14-159 (220)
118 2v9t_B SLIT homolog 2 protein 99.2 9E-11 3.1E-15 119.7 11.5 134 546-690 30-166 (220)
119 2o6s_A Variable lymphocyte rec 99.2 1.8E-10 6.3E-15 116.4 13.2 120 573-703 29-152 (208)
120 1xeu_A Internalin C; cellular 99.2 4.3E-11 1.5E-15 125.7 8.6 86 597-693 17-102 (263)
121 2je0_A Acidic leucine-rich nuc 99.2 2.9E-11 9.7E-16 115.1 6.4 123 548-683 17-147 (149)
122 4b8c_D Glucose-repressible alc 99.1 6.4E-11 2.2E-15 142.8 10.6 150 547-705 172-322 (727)
123 2v70_A SLIT-2, SLIT homolog 2 99.1 1.3E-10 4.5E-15 118.4 11.3 134 546-690 30-167 (220)
124 2je0_A Acidic leucine-rich nuc 99.1 4.8E-11 1.6E-15 113.5 7.3 125 571-706 16-147 (149)
125 2chg_A Replication factor C sm 99.1 1.1E-09 3.8E-14 112.0 18.0 185 163-388 17-204 (226)
126 1m9s_A Internalin B; cell inva 99.1 1.1E-10 3.6E-15 137.2 11.5 138 548-704 65-202 (605)
127 3goz_A Leucine-rich repeat-con 99.1 2.5E-11 8.7E-16 134.4 5.7 246 556-846 6-294 (362)
128 4ezg_A Putative uncharacterize 99.1 3E-10 1E-14 113.7 12.8 130 546-689 64-194 (197)
129 1a9n_A U2A', U2A'; complex (nu 99.1 1.1E-10 3.7E-15 114.6 9.2 128 567-707 14-148 (176)
130 2o6s_A Variable lymphocyte rec 99.1 3.4E-10 1.2E-14 114.4 12.3 133 546-689 26-161 (208)
131 1xeu_A Internalin C; cellular 99.1 3.8E-10 1.3E-14 118.5 12.7 140 547-706 40-179 (263)
132 3goz_A Leucine-rich repeat-con 99.1 6.6E-11 2.2E-15 131.0 7.2 214 591-847 14-264 (362)
133 2xot_A Amphoterin-induced prot 99.1 2.4E-10 8.3E-15 126.3 11.4 111 573-694 40-154 (361)
134 3cvr_A Invasion plasmid antige 99.0 3.2E-10 1.1E-14 131.5 9.7 78 600-693 60-137 (571)
135 3cvr_A Invasion plasmid antige 99.0 1.1E-09 3.8E-14 127.0 14.1 128 548-705 59-186 (571)
136 4b8c_D Glucose-repressible alc 99.0 2.9E-10 9.9E-15 137.1 8.1 117 563-691 215-331 (727)
137 1a9n_A U2A', U2A'; complex (nu 99.0 3.3E-10 1.1E-14 111.1 6.8 130 546-689 17-153 (176)
138 1dce_A Protein (RAB geranylger 99.0 9.3E-10 3.2E-14 128.4 11.1 109 574-696 443-553 (567)
139 1w8a_A SLIT protein; signaling 99.0 1.1E-09 3.7E-14 109.0 10.0 125 551-689 11-139 (192)
140 1sxj_B Activator 1 37 kDa subu 99.0 3.2E-09 1.1E-13 115.5 13.4 185 163-388 21-210 (323)
141 1hqc_A RUVB; extended AAA-ATPa 98.9 8.9E-09 3.1E-13 111.9 16.1 268 163-498 12-324 (324)
142 2xot_A Amphoterin-induced prot 98.9 1.8E-09 6.2E-14 119.2 10.6 138 545-693 36-180 (361)
143 2wfh_A SLIT homolog 2 protein 98.9 3.3E-09 1.1E-13 105.4 10.8 105 572-688 31-138 (193)
144 2o6r_A Variable lymphocyte rec 98.9 5E-09 1.7E-13 102.7 11.5 125 551-689 10-137 (177)
145 1ds9_A Outer arm dynein; leuci 98.9 1.7E-11 5.9E-16 122.9 -7.0 113 565-691 41-155 (198)
146 1dce_A Protein (RAB geranylger 98.8 3.6E-09 1.2E-13 123.4 9.3 96 600-705 442-539 (567)
147 2wfh_A SLIT homolog 2 protein 98.8 7.6E-09 2.6E-13 102.8 10.3 99 599-705 31-132 (193)
148 1w8a_A SLIT protein; signaling 98.8 5.5E-09 1.9E-13 103.8 9.1 117 575-705 11-132 (192)
149 3sb4_A Hypothetical leucine ri 98.8 1.3E-08 4.3E-13 110.9 11.5 285 571-932 24-327 (329)
150 1iqp_A RFCS; clamp loader, ext 98.8 4.7E-08 1.6E-12 106.4 15.0 183 163-389 25-213 (327)
151 3te6_A Regulatory protein SIR3 98.8 8.1E-08 2.8E-12 101.7 16.0 180 165-354 22-211 (318)
152 2r9u_A Variable lymphocyte rec 98.8 1.6E-08 5.4E-13 98.6 9.4 89 599-695 33-124 (174)
153 1ds9_A Outer arm dynein; leuci 98.7 8.1E-10 2.8E-14 110.6 -1.8 105 591-705 40-146 (198)
154 2r9u_A Variable lymphocyte rec 98.7 3E-08 1E-12 96.6 9.2 95 601-705 14-111 (174)
155 3g39_A Variable lymphocyte rec 98.7 5E-08 1.7E-12 94.6 9.4 84 599-690 30-116 (170)
156 3g39_A Variable lymphocyte rec 98.7 4.4E-08 1.5E-12 95.0 8.5 96 600-705 10-108 (170)
157 1jr3_A DNA polymerase III subu 98.6 3.1E-07 1E-11 101.9 15.1 196 163-388 16-221 (373)
158 2o6r_A Variable lymphocyte rec 98.6 1.1E-07 3.9E-12 92.9 9.9 108 546-663 26-135 (177)
159 2chq_A Replication factor C sm 98.5 4.1E-07 1.4E-11 98.4 12.9 182 163-387 17-203 (319)
160 3sb4_A Hypothetical leucine ri 98.5 6E-07 2.1E-11 97.5 13.8 290 547-909 24-327 (329)
161 1jbk_A CLPB protein; beta barr 98.4 5.9E-07 2E-11 89.0 9.1 45 163-217 22-66 (195)
162 1sxj_D Activator 1 41 kDa subu 98.4 4.1E-06 1.4E-10 91.9 15.6 196 163-388 37-235 (353)
163 3pfi_A Holliday junction ATP-d 98.3 1.3E-05 4.6E-10 87.1 19.3 180 162-387 28-226 (338)
164 3bos_A Putative DNA replicatio 98.3 6.1E-07 2.1E-11 92.6 8.0 178 163-388 28-217 (242)
165 4fdw_A Leucine rich hypothetic 98.3 2E-05 6.7E-10 87.6 20.2 121 810-956 268-397 (401)
166 3pvs_A Replication-associated 98.3 7.3E-06 2.5E-10 91.9 16.7 181 163-387 26-214 (447)
167 2z4s_A Chromosomal replication 98.3 7.9E-06 2.7E-10 91.9 15.1 186 194-406 130-331 (440)
168 1sxj_E Activator 1 40 kDa subu 98.2 4.5E-06 1.5E-10 91.7 12.5 197 163-388 14-237 (354)
169 3h4m_A Proteasome-activating n 98.2 1.3E-05 4.3E-10 85.0 15.2 194 162-386 16-229 (285)
170 3uk6_A RUVB-like 2; hexameric 98.2 3.5E-05 1.2E-09 84.9 19.0 207 163-386 44-301 (368)
171 2ifg_A High affinity nerve gro 98.2 1.8E-06 6E-11 94.7 8.4 91 591-690 24-117 (347)
172 2ifg_A High affinity nerve gro 98.2 2.1E-06 7.3E-11 94.0 9.0 90 563-663 23-114 (347)
173 1a5t_A Delta prime, HOLB; zinc 98.2 3E-05 1E-09 84.0 17.9 173 168-388 7-205 (334)
174 3syl_A Protein CBBX; photosynt 98.1 2.4E-05 8.3E-10 83.9 14.7 173 164-355 32-218 (309)
175 3u61_B DNA polymerase accessor 98.1 3.6E-05 1.2E-09 83.2 15.6 178 163-384 26-212 (324)
176 1d2n_A N-ethylmaleimide-sensit 98.1 5E-05 1.7E-09 79.7 16.1 201 164-406 34-260 (272)
177 4fdw_A Leucine rich hypothetic 98.1 8.6E-05 2.9E-09 82.4 18.3 117 571-704 112-231 (401)
178 1sxj_A Activator 1 95 kDa subu 98.1 2.5E-05 8.4E-10 90.0 14.0 202 163-387 39-252 (516)
179 3n70_A Transport activator; si 98.0 1E-05 3.5E-10 75.8 7.7 113 164-313 2-115 (145)
180 2qz4_A Paraplegin; AAA+, SPG7, 98.0 0.00023 7.8E-09 74.1 18.9 190 163-382 6-215 (262)
181 2p65_A Hypothetical protein PF 98.0 2.1E-05 7.2E-10 77.1 10.1 45 163-217 22-66 (187)
182 3un9_A NLR family member X1; l 98.0 5.6E-07 1.9E-11 99.1 -1.7 137 548-689 72-224 (372)
183 3ec2_A DNA replication protein 97.9 2.5E-05 8.5E-10 76.3 9.8 122 168-314 19-143 (180)
184 1l8q_A Chromosomal replication 97.9 4.9E-05 1.7E-09 82.1 12.7 159 193-382 36-202 (324)
185 1sxj_C Activator 1 40 kDa subu 97.9 9.6E-05 3.3E-09 80.3 15.0 183 163-386 25-210 (340)
186 3un9_A NLR family member X1; l 97.9 3.9E-06 1.3E-10 92.3 2.6 139 547-690 100-253 (372)
187 3eie_A Vacuolar protein sortin 97.9 0.00036 1.2E-08 75.1 17.9 194 162-388 17-228 (322)
188 3e4g_A ATP synthase subunit S, 97.8 2.8E-06 9.5E-11 81.1 0.8 37 814-851 62-100 (176)
189 3d8b_A Fidgetin-like protein 1 97.8 0.00036 1.2E-08 76.2 17.7 194 163-389 84-296 (357)
190 1xwi_A SKD1 protein; VPS4B, AA 97.8 0.0013 4.5E-08 70.4 21.0 196 163-389 12-224 (322)
191 3cf0_A Transitional endoplasmi 97.8 0.0013 4.4E-08 69.8 20.1 189 163-382 15-222 (301)
192 3b9p_A CG5977-PA, isoform A; A 97.7 0.0011 3.8E-08 70.3 18.9 193 163-388 21-233 (297)
193 3co5_A Putative two-component 97.7 2.6E-05 8.9E-10 72.7 5.2 109 164-312 5-114 (143)
194 2w58_A DNAI, primosome compone 97.7 4.1E-05 1.4E-09 76.3 7.1 90 170-283 36-125 (202)
195 2qp9_X Vacuolar protein sortin 97.7 0.0011 3.8E-08 72.1 18.9 193 163-388 51-261 (355)
196 3vfd_A Spastin; ATPase, microt 97.7 0.0015 5.1E-08 72.3 20.1 194 162-388 114-326 (389)
197 4fs7_A Uncharacterized protein 97.7 0.0015 5.1E-08 72.5 19.9 303 566-935 65-375 (394)
198 2gno_A DNA polymerase III, gam 97.7 0.00021 7.3E-09 75.6 12.1 149 168-354 2-152 (305)
199 1in4_A RUVB, holliday junction 97.7 0.0025 8.4E-08 68.8 20.4 179 163-387 25-222 (334)
200 2zan_A Vacuolar protein sortin 97.6 0.0023 8E-08 71.8 20.5 194 162-388 133-345 (444)
201 3hu3_A Transitional endoplasmi 97.6 0.00061 2.1E-08 77.1 14.8 194 163-387 204-414 (489)
202 3pxg_A Negative regulator of g 97.6 0.00023 7.8E-09 80.7 11.2 152 163-354 180-338 (468)
203 1io0_A Tropomodulin; LRR prote 97.6 5.8E-05 2E-09 73.9 5.4 117 567-688 31-163 (185)
204 3e4g_A ATP synthase subunit S, 97.6 5.4E-05 1.8E-09 72.2 4.7 90 571-667 60-154 (176)
205 1qvr_A CLPB protein; coiled co 97.5 0.00042 1.4E-08 85.0 13.8 158 163-353 170-344 (854)
206 4fcw_A Chaperone protein CLPB; 97.5 0.00034 1.2E-08 74.9 10.8 127 164-300 18-145 (311)
207 2bjv_A PSP operon transcriptio 97.5 0.00014 4.9E-09 75.8 7.6 46 164-217 7-52 (265)
208 2ra8_A Uncharacterized protein 97.5 0.0002 6.9E-09 77.9 8.8 135 547-688 171-319 (362)
209 1ojl_A Transcriptional regulat 97.5 0.0002 6.8E-09 76.1 8.4 46 163-216 2-47 (304)
210 4b4t_L 26S protease subunit RP 97.5 0.0033 1.1E-07 69.3 18.0 187 163-381 181-387 (437)
211 4b4t_J 26S protease regulatory 97.4 0.0039 1.3E-07 67.5 18.1 187 163-381 148-354 (405)
212 1lv7_A FTSH; alpha/beta domain 97.4 0.0062 2.1E-07 62.9 19.1 191 163-385 12-222 (257)
213 2c9o_A RUVB-like 1; hexameric 97.4 0.0011 3.6E-08 75.0 13.4 107 275-388 297-410 (456)
214 2ra8_A Uncharacterized protein 97.4 7.7E-05 2.6E-09 81.2 3.8 38 651-688 251-291 (362)
215 4b4t_K 26S protease regulatory 97.3 0.0038 1.3E-07 68.7 15.9 187 162-380 171-378 (428)
216 1r6b_X CLPA protein; AAA+, N-t 97.3 0.0043 1.5E-07 75.2 18.1 160 163-354 186-362 (758)
217 3rw6_A Nuclear RNA export fact 97.2 0.00025 8.7E-09 73.0 5.8 59 597-663 168-231 (267)
218 2kjq_A DNAA-related protein; s 97.2 0.00021 7.2E-09 66.9 4.7 85 195-312 37-123 (149)
219 4b4t_H 26S protease regulatory 97.2 0.0095 3.2E-07 65.5 18.3 186 163-380 209-414 (467)
220 2ce7_A Cell division protein F 97.2 0.0077 2.6E-07 67.5 18.0 188 163-381 16-221 (476)
221 4b4t_M 26S protease regulatory 97.2 0.0053 1.8E-07 67.6 16.0 186 163-380 181-386 (434)
222 3pxi_A Negative regulator of g 97.2 0.00044 1.5E-08 83.8 7.8 165 163-354 491-675 (758)
223 1io0_A Tropomodulin; LRR prote 97.2 0.00041 1.4E-08 67.8 6.1 97 591-689 28-136 (185)
224 3pxi_A Negative regulator of g 97.2 0.0011 3.8E-08 80.3 11.2 154 163-354 180-338 (758)
225 4b4t_I 26S protease regulatory 97.1 0.012 4E-07 64.0 17.5 186 163-380 182-387 (437)
226 1ofh_A ATP-dependent HSL prote 97.1 0.00097 3.3E-08 71.2 8.5 54 163-216 15-72 (310)
227 2cvh_A DNA repair and recombin 97.0 0.0041 1.4E-07 62.4 12.3 85 193-283 19-115 (220)
228 2r62_A Cell division protease 96.9 0.00035 1.2E-08 73.0 3.2 55 163-217 11-67 (268)
229 4fs7_A Uncharacterized protein 96.9 0.018 6.1E-07 63.7 17.0 274 548-880 71-350 (394)
230 2qgz_A Helicase loader, putati 96.9 0.00074 2.5E-08 71.7 5.2 56 169-232 134-189 (308)
231 3rw6_A Nuclear RNA export fact 96.8 0.00097 3.3E-08 68.6 5.2 80 625-707 167-259 (267)
232 3cf2_A TER ATPase, transitiona 96.7 0.019 6.3E-07 68.3 16.1 186 164-381 205-407 (806)
233 4gt6_A Cell surface protein; l 96.7 0.037 1.3E-06 61.1 17.8 107 567-684 58-168 (394)
234 1r6b_X CLPA protein; AAA+, N-t 96.7 0.0028 9.7E-08 76.8 9.3 125 163-300 458-583 (758)
235 1tue_A Replication protein E1; 96.7 0.0021 7.3E-08 62.2 6.2 25 192-216 56-80 (212)
236 2r44_A Uncharacterized protein 96.7 0.0039 1.3E-07 67.2 9.0 158 164-355 28-199 (331)
237 1qvr_A CLPB protein; coiled co 96.6 0.0045 1.5E-07 75.9 10.2 140 164-313 559-710 (854)
238 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.00097 3.3E-08 69.7 3.6 68 194-283 123-192 (331)
239 3t15_A Ribulose bisphosphate c 96.5 0.0072 2.5E-07 63.6 9.6 25 192-216 34-58 (293)
240 4h09_A Hypothetical leucine ri 96.4 0.077 2.6E-06 58.1 17.8 64 789-856 240-305 (379)
241 1ixz_A ATP-dependent metallopr 96.4 0.074 2.5E-06 54.5 16.3 187 163-380 16-220 (254)
242 1um8_A ATP-dependent CLP prote 96.4 0.016 5.6E-07 63.5 11.9 23 194-216 72-94 (376)
243 3m6a_A ATP-dependent protease 96.4 0.0075 2.6E-07 69.4 9.4 50 163-216 81-130 (543)
244 2cbz_A Multidrug resistance-as 96.3 0.032 1.1E-06 56.4 13.0 54 265-318 137-193 (237)
245 2w0m_A SSO2452; RECA, SSPF, un 96.3 0.013 4.6E-07 59.2 10.1 116 194-314 23-168 (235)
246 2b8t_A Thymidine kinase; deoxy 96.3 0.0041 1.4E-07 62.0 5.9 113 194-315 12-127 (223)
247 1ypw_A Transitional endoplasmi 96.3 0.043 1.5E-06 66.3 15.8 166 163-354 204-385 (806)
248 2dhr_A FTSH; AAA+ protein, hex 96.2 0.047 1.6E-06 61.5 14.7 185 161-381 29-236 (499)
249 1iy2_A ATP-dependent metallopr 96.2 0.09 3.1E-06 54.7 15.9 189 162-381 39-245 (278)
250 3nbx_X ATPase RAVA; AAA+ ATPas 96.1 0.03 1E-06 63.1 12.6 42 164-217 23-64 (500)
251 3hr8_A Protein RECA; alpha and 96.1 0.013 4.6E-07 62.8 9.0 84 193-283 60-149 (356)
252 1n0w_A DNA repair protein RAD5 96.1 0.019 6.5E-07 58.5 9.8 90 193-283 23-129 (243)
253 2x8a_A Nuclear valosin-contain 96.1 0.13 4.5E-06 53.2 16.3 166 163-354 10-191 (274)
254 1ye8_A Protein THEP1, hypothet 96.0 0.031 1.1E-06 53.7 10.3 22 196-217 2-23 (178)
255 2pze_A Cystic fibrosis transme 96.0 0.068 2.3E-06 53.7 13.2 54 265-318 140-194 (229)
256 1jr3_D DNA polymerase III, del 96.0 0.073 2.5E-06 57.4 14.5 159 193-387 17-184 (343)
257 1g5t_A COB(I)alamin adenosyltr 96.0 0.016 5.4E-07 55.9 7.9 120 194-315 28-164 (196)
258 2z43_A DNA repair and recombin 95.9 0.029 9.9E-07 59.9 10.5 89 193-282 106-212 (324)
259 1v5w_A DMC1, meiotic recombina 95.9 0.042 1.4E-06 59.1 11.8 59 192-251 120-182 (343)
260 1sgw_A Putative ABC transporte 95.8 0.037 1.3E-06 54.9 10.0 125 195-319 36-198 (214)
261 3io5_A Recombination and repai 95.7 0.027 9.2E-07 58.6 8.9 81 196-283 30-121 (333)
262 2i1q_A DNA repair and recombin 95.7 0.026 8.8E-07 60.4 9.0 89 193-282 97-213 (322)
263 4gt6_A Cell surface protein; l 95.6 0.11 3.7E-06 57.3 14.3 124 549-685 65-191 (394)
264 2ff7_A Alpha-hemolysin translo 95.6 0.059 2E-06 54.8 11.0 55 265-319 155-209 (247)
265 2pjz_A Hypothetical protein ST 95.6 0.066 2.3E-06 54.9 11.4 120 194-317 30-188 (263)
266 2zr9_A Protein RECA, recombina 95.6 0.032 1.1E-06 60.0 9.4 84 193-283 60-149 (349)
267 1rz3_A Hypothetical protein rb 95.6 0.012 4.2E-07 58.0 5.6 42 168-216 3-44 (201)
268 1xp8_A RECA protein, recombina 95.5 0.038 1.3E-06 59.7 9.4 84 193-283 73-162 (366)
269 1u94_A RECA protein, recombina 95.4 0.04 1.4E-06 59.3 9.3 84 193-283 62-151 (356)
270 3gfo_A Cobalt import ATP-bindi 95.3 0.084 2.9E-06 54.5 11.2 55 264-318 152-208 (275)
271 2px0_A Flagellar biosynthesis 95.3 0.045 1.5E-06 57.3 9.2 87 193-282 104-191 (296)
272 3ice_A Transcription terminati 95.3 0.017 5.7E-07 61.7 5.6 95 174-282 163-270 (422)
273 1vpl_A ABC transporter, ATP-bi 95.2 0.079 2.7E-06 54.1 10.5 54 265-318 156-210 (256)
274 2yz2_A Putative ABC transporte 95.2 0.12 4E-06 53.3 11.9 54 265-318 148-202 (266)
275 1cr0_A DNA primase/helicase; R 95.1 0.074 2.5E-06 56.0 10.2 38 193-232 34-72 (296)
276 2zu0_C Probable ATP-dependent 95.0 0.35 1.2E-05 49.7 14.8 55 265-319 174-229 (267)
277 3cf2_A TER ATPase, transitiona 95.0 0.12 4.3E-06 61.3 12.7 102 161-283 475-580 (806)
278 2ghi_A Transport protein; mult 95.0 0.18 6.1E-06 51.7 12.3 53 266-318 166-218 (260)
279 2ixe_A Antigen peptide transpo 95.0 0.17 5.8E-06 52.2 12.2 54 265-318 166-221 (271)
280 2p5t_B PEZT; postsegregational 94.9 0.034 1.1E-06 57.1 6.7 25 192-216 30-54 (253)
281 2d2e_A SUFC protein; ABC-ATPas 94.9 0.17 5.8E-06 51.5 11.9 54 266-319 154-208 (250)
282 1mv5_A LMRA, multidrug resista 94.9 0.076 2.6E-06 53.9 9.1 23 194-216 28-50 (243)
283 2bbs_A Cystic fibrosis transme 94.9 0.21 7E-06 52.0 12.6 54 265-318 169-223 (290)
284 1ukz_A Uridylate kinase; trans 94.8 0.19 6.4E-06 49.3 11.6 25 192-216 13-37 (203)
285 4g1u_C Hemin import ATP-bindin 94.8 0.16 5.3E-06 52.3 11.2 125 194-318 37-212 (266)
286 2nq2_C Hypothetical ABC transp 94.7 0.12 4E-06 52.8 10.0 123 195-317 32-192 (253)
287 3tqc_A Pantothenate kinase; bi 94.7 0.069 2.4E-06 56.4 8.4 100 165-273 69-171 (321)
288 3c8u_A Fructokinase; YP_612366 94.7 0.023 7.9E-07 56.3 4.5 38 171-216 7-44 (208)
289 3bh0_A DNAB-like replicative h 94.5 0.11 3.6E-06 55.2 9.6 53 193-249 67-119 (315)
290 1vma_A Cell division protein F 94.5 0.23 7.9E-06 52.1 11.9 89 192-283 102-196 (306)
291 4a74_A DNA repair and recombin 94.5 0.11 3.8E-06 52.1 9.2 56 193-249 24-83 (231)
292 1pzn_A RAD51, DNA repair and r 94.3 0.16 5.6E-06 54.5 10.6 91 192-283 129-241 (349)
293 1odf_A YGR205W, hypothetical 3 94.3 0.19 6.5E-06 52.3 10.6 81 192-272 29-117 (290)
294 2orw_A Thymidine kinase; TMTK, 94.3 0.01 3.6E-07 57.4 0.9 23 195-217 4-26 (184)
295 3lda_A DNA repair protein RAD5 94.2 0.11 3.9E-06 56.7 9.0 90 193-283 177-283 (400)
296 3tui_C Methionine import ATP-b 94.2 0.13 4.5E-06 55.1 9.3 57 263-319 171-229 (366)
297 1sky_E F1-ATPase, F1-ATP synth 94.2 0.096 3.3E-06 57.8 8.4 86 195-282 152-254 (473)
298 3l0o_A Transcription terminati 94.2 0.16 5.3E-06 54.2 9.6 52 173-235 163-216 (427)
299 2r6a_A DNAB helicase, replicat 94.1 1.1 3.8E-05 50.0 17.4 52 193-247 202-253 (454)
300 3lw7_A Adenylate kinase relate 94.0 0.025 8.5E-07 54.1 3.1 20 195-214 2-21 (179)
301 1qhx_A CPT, protein (chloramph 94.0 0.024 8.2E-07 54.5 2.9 22 195-216 4-25 (178)
302 3sr0_A Adenylate kinase; phosp 94.0 0.2 6.8E-06 49.2 9.5 87 196-298 2-97 (206)
303 3hws_A ATP-dependent CLP prote 94.0 0.043 1.5E-06 59.7 5.2 53 164-216 16-73 (363)
304 3dm5_A SRP54, signal recogniti 93.9 0.51 1.7E-05 51.9 13.5 24 193-216 99-122 (443)
305 3d31_A Sulfate/molybdate ABC t 93.9 0.16 5.5E-06 54.3 9.4 124 194-317 26-191 (348)
306 1j8m_F SRP54, signal recogniti 93.9 0.19 6.6E-06 52.5 9.8 87 194-282 98-189 (297)
307 2q6t_A DNAB replication FORK h 93.9 1.3 4.3E-05 49.4 17.2 54 193-249 199-252 (444)
308 1zp6_A Hypothetical protein AT 93.9 0.03 1E-06 54.5 3.4 25 193-217 8-32 (191)
309 1z47_A CYSA, putative ABC-tran 93.9 0.12 4.1E-06 55.4 8.3 125 194-318 41-210 (355)
310 3kb2_A SPBC2 prophage-derived 93.9 0.027 9.3E-07 53.7 2.9 22 195-216 2-23 (173)
311 4a1f_A DNAB helicase, replicat 93.8 0.2 6.9E-06 53.1 9.8 53 194-250 46-98 (338)
312 3vaa_A Shikimate kinase, SK; s 93.8 0.03 1E-06 55.0 3.1 23 194-216 25-47 (199)
313 4akg_A Glutathione S-transfera 93.7 0.63 2.1E-05 62.8 16.2 145 195-354 1268-1431(2695)
314 2dr3_A UPF0273 protein PH0284; 93.7 0.15 5E-06 51.8 8.4 40 193-234 22-61 (247)
315 3nh6_A ATP-binding cassette SU 93.7 0.16 5.6E-06 53.1 8.7 24 193-216 79-102 (306)
316 1kgd_A CASK, peripheral plasma 93.7 0.038 1.3E-06 53.2 3.6 23 194-216 5-27 (180)
317 2ffh_A Protein (FFH); SRP54, s 93.6 0.22 7.4E-06 54.7 9.9 23 194-216 98-120 (425)
318 1gvn_B Zeta; postsegregational 93.5 0.059 2E-06 56.3 5.0 25 192-216 31-55 (287)
319 1fx0_B ATP synthase beta chain 93.5 0.17 5.9E-06 55.9 8.7 89 193-282 164-275 (498)
320 1ly1_A Polynucleotide kinase; 93.5 0.033 1.1E-06 53.6 2.8 22 195-216 3-24 (181)
321 1kag_A SKI, shikimate kinase I 93.4 0.032 1.1E-06 53.3 2.6 22 195-216 5-26 (173)
322 2ck3_D ATP synthase subunit be 93.4 0.24 8.3E-06 54.5 9.8 65 174-248 142-207 (482)
323 2it1_A 362AA long hypothetical 93.4 0.24 8.1E-06 53.2 9.6 124 194-317 29-197 (362)
324 3trf_A Shikimate kinase, SK; a 93.3 0.037 1.3E-06 53.6 2.9 23 194-216 5-27 (185)
325 2xxa_A Signal recognition part 93.3 0.19 6.5E-06 55.6 8.9 26 192-217 98-123 (433)
326 3gd7_A Fusion complex of cysti 93.3 0.23 7.8E-06 54.0 9.4 55 265-319 165-219 (390)
327 3uie_A Adenylyl-sulfate kinase 93.3 0.046 1.6E-06 53.7 3.6 24 193-216 24-47 (200)
328 3e70_C DPA, signal recognition 93.3 0.3 1E-05 51.8 10.0 25 192-216 127-151 (328)
329 3jvv_A Twitching mobility prot 93.2 0.038 1.3E-06 59.5 3.0 111 195-318 124-235 (356)
330 4eun_A Thermoresistant glucoki 93.2 0.048 1.6E-06 53.6 3.5 24 193-216 28-51 (200)
331 3rlf_A Maltose/maltodextrin im 93.1 0.21 7.1E-06 53.9 8.6 125 194-318 29-198 (381)
332 2ga8_A Hypothetical 39.9 kDa p 93.1 0.061 2.1E-06 57.1 4.4 45 166-216 2-46 (359)
333 3upu_A ATP-dependent DNA helic 93.1 0.22 7.4E-06 56.0 9.3 107 195-315 46-166 (459)
334 1ex7_A Guanylate kinase; subst 93.1 0.039 1.3E-06 53.2 2.6 22 195-216 2-23 (186)
335 3t61_A Gluconokinase; PSI-biol 93.1 0.041 1.4E-06 54.1 2.9 23 194-216 18-40 (202)
336 4gp7_A Metallophosphoesterase; 93.0 0.045 1.5E-06 52.2 2.8 23 194-216 9-31 (171)
337 3tr0_A Guanylate kinase, GMP k 93.0 0.055 1.9E-06 53.3 3.6 23 194-216 7-29 (205)
338 1knq_A Gluconate kinase; ALFA/ 93.0 0.059 2E-06 51.5 3.7 24 193-216 7-30 (175)
339 3kl4_A SRP54, signal recogniti 92.9 0.6 2E-05 51.3 12.0 25 193-217 96-120 (433)
340 2rhm_A Putative kinase; P-loop 92.9 0.048 1.6E-06 53.1 3.0 24 193-216 4-27 (193)
341 3iij_A Coilin-interacting nucl 92.9 0.051 1.8E-06 52.3 3.1 24 193-216 10-33 (180)
342 3tau_A Guanylate kinase, GMP k 92.9 0.059 2E-06 53.3 3.6 25 193-217 7-31 (208)
343 1y63_A LMAJ004144AAA protein; 92.9 0.06 2E-06 52.1 3.6 24 193-216 9-32 (184)
344 2yyz_A Sugar ABC transporter, 92.8 0.24 8.3E-06 53.1 8.5 125 194-318 29-198 (359)
345 3a00_A Guanylate kinase, GMP k 92.8 0.047 1.6E-06 52.9 2.7 22 195-216 2-23 (186)
346 1zu4_A FTSY; GTPase, signal re 92.7 0.76 2.6E-05 48.5 12.2 25 192-216 103-127 (320)
347 2qt1_A Nicotinamide riboside k 92.7 0.069 2.4E-06 52.7 3.9 25 192-216 19-43 (207)
348 1zuh_A Shikimate kinase; alpha 92.7 0.052 1.8E-06 51.6 2.9 25 192-216 5-29 (168)
349 1xjc_A MOBB protein homolog; s 92.7 0.064 2.2E-06 50.6 3.3 24 193-216 3-26 (169)
350 3zvl_A Bifunctional polynucleo 92.7 0.17 5.7E-06 56.0 7.3 25 192-216 256-280 (416)
351 2j41_A Guanylate kinase; GMP, 92.6 0.066 2.3E-06 52.8 3.6 24 194-217 6-29 (207)
352 2bdt_A BH3686; alpha-beta prot 92.6 0.057 1.9E-06 52.4 3.1 22 195-216 3-24 (189)
353 1nks_A Adenylate kinase; therm 92.6 0.049 1.7E-06 53.0 2.6 22 195-216 2-23 (194)
354 3asz_A Uridine kinase; cytidin 92.6 0.06 2E-06 53.4 3.3 24 193-216 5-28 (211)
355 1g8p_A Magnesium-chelatase 38 92.6 0.051 1.8E-06 58.8 3.0 44 163-216 24-67 (350)
356 1kht_A Adenylate kinase; phosp 92.6 0.054 1.8E-06 52.6 2.9 22 195-216 4-25 (192)
357 2qor_A Guanylate kinase; phosp 92.6 0.051 1.7E-06 53.6 2.7 24 193-216 11-34 (204)
358 1via_A Shikimate kinase; struc 92.6 0.046 1.6E-06 52.4 2.3 22 195-216 5-26 (175)
359 1uf9_A TT1252 protein; P-loop, 92.5 0.059 2E-06 53.0 3.0 25 192-216 6-30 (203)
360 1ls1_A Signal recognition part 92.5 0.37 1.3E-05 50.3 9.3 86 194-282 98-189 (295)
361 1rj9_A FTSY, signal recognitio 92.4 0.085 2.9E-06 55.4 4.3 24 193-216 101-124 (304)
362 2c95_A Adenylate kinase 1; tra 92.4 0.064 2.2E-06 52.4 3.2 24 193-216 8-31 (196)
363 3umf_A Adenylate kinase; rossm 92.4 0.07 2.4E-06 52.8 3.4 25 192-216 27-51 (217)
364 1jjv_A Dephospho-COA kinase; P 92.3 0.067 2.3E-06 52.8 3.3 22 195-216 3-24 (206)
365 1lvg_A Guanylate kinase, GMP k 92.3 0.057 2E-06 52.9 2.7 22 195-216 5-26 (198)
366 2ze6_A Isopentenyl transferase 92.3 0.057 1.9E-06 55.3 2.7 22 195-216 2-23 (253)
367 3cmu_A Protein RECA, recombina 92.3 0.22 7.7E-06 64.6 8.7 84 192-282 1425-1514(2050)
368 2iyv_A Shikimate kinase, SK; t 92.3 0.049 1.7E-06 52.6 2.1 22 195-216 3-24 (184)
369 2if2_A Dephospho-COA kinase; a 92.3 0.068 2.3E-06 52.6 3.2 22 195-216 2-23 (204)
370 2jaq_A Deoxyguanosine kinase; 92.3 0.06 2.1E-06 52.9 2.8 21 196-216 2-22 (205)
371 2bbw_A Adenylate kinase 4, AK4 92.2 0.075 2.6E-06 54.2 3.5 23 194-216 27-49 (246)
372 2cdn_A Adenylate kinase; phosp 92.2 0.079 2.7E-06 52.0 3.5 25 192-216 18-42 (201)
373 3fwy_A Light-independent proto 92.2 0.071 2.4E-06 56.3 3.3 25 192-216 46-70 (314)
374 2yvu_A Probable adenylyl-sulfa 92.2 0.086 2.9E-06 51.0 3.7 25 193-217 12-36 (186)
375 1tev_A UMP-CMP kinase; ploop, 92.2 0.064 2.2E-06 52.3 2.8 22 195-216 4-25 (196)
376 1uj2_A Uridine-cytidine kinase 92.2 0.066 2.2E-06 54.8 3.0 25 192-216 20-44 (252)
377 2yhs_A FTSY, cell division pro 92.2 0.3 1E-05 54.2 8.4 43 192-237 291-333 (503)
378 3rfe_A Platelet glycoprotein I 92.1 0.21 7.3E-06 44.8 6.1 33 629-662 32-65 (130)
379 1cke_A CK, MSSA, protein (cyti 92.1 0.07 2.4E-06 53.5 3.2 22 195-216 6-27 (227)
380 1nn5_A Similar to deoxythymidy 92.0 0.2 6.7E-06 49.6 6.3 23 194-216 9-31 (215)
381 2plr_A DTMP kinase, probable t 92.0 0.16 5.5E-06 50.2 5.6 22 195-216 5-26 (213)
382 1znw_A Guanylate kinase, GMP k 92.0 0.079 2.7E-06 52.3 3.3 24 193-216 19-42 (207)
383 2hf9_A Probable hydrogenase ni 92.0 0.12 4E-06 51.8 4.6 26 192-217 36-61 (226)
384 1oxx_K GLCV, glucose, ABC tran 92.0 0.39 1.3E-05 51.5 8.9 125 194-318 31-205 (353)
385 3a4m_A L-seryl-tRNA(SEC) kinas 92.0 0.07 2.4E-06 54.9 3.0 23 194-216 4-26 (260)
386 3ney_A 55 kDa erythrocyte memb 92.0 0.097 3.3E-06 50.8 3.7 24 193-216 18-41 (197)
387 1htw_A HI0065; nucleotide-bind 91.9 0.084 2.9E-06 49.4 3.2 23 194-216 33-55 (158)
388 1e6c_A Shikimate kinase; phosp 91.9 0.062 2.1E-06 51.2 2.3 22 195-216 3-24 (173)
389 1qf9_A UMP/CMP kinase, protein 91.9 0.086 2.9E-06 51.2 3.4 24 193-216 5-28 (194)
390 2vli_A Antibiotic resistance p 91.9 0.055 1.9E-06 52.2 1.9 24 193-216 4-27 (183)
391 3hjn_A DTMP kinase, thymidylat 91.8 0.34 1.2E-05 47.2 7.6 50 196-247 2-51 (197)
392 2bwj_A Adenylate kinase 5; pho 91.8 0.077 2.6E-06 51.9 2.9 23 194-216 12-34 (199)
393 3cm0_A Adenylate kinase; ATP-b 91.8 0.074 2.5E-06 51.4 2.8 22 195-216 5-26 (186)
394 3b5x_A Lipid A export ATP-bind 91.8 0.57 1.9E-05 54.3 10.8 23 194-216 369-391 (582)
395 3rfe_A Platelet glycoprotein I 91.8 0.18 6.3E-06 45.3 5.2 54 632-689 12-68 (130)
396 3tlx_A Adenylate kinase 2; str 91.8 0.1 3.6E-06 52.9 4.0 24 193-216 28-51 (243)
397 3b60_A Lipid A export ATP-bind 91.8 0.58 2E-05 54.2 10.8 23 194-216 369-391 (582)
398 2z0h_A DTMP kinase, thymidylat 91.8 0.21 7E-06 48.7 6.0 21 196-216 2-22 (197)
399 3aez_A Pantothenate kinase; tr 91.7 0.088 3E-06 55.6 3.4 25 192-216 88-112 (312)
400 2f1r_A Molybdopterin-guanine d 91.7 0.075 2.6E-06 50.5 2.6 23 195-217 3-25 (171)
401 2pt5_A Shikimate kinase, SK; a 91.6 0.081 2.8E-06 50.1 2.8 21 196-216 2-22 (168)
402 2grj_A Dephospho-COA kinase; T 91.6 0.084 2.9E-06 51.3 2.8 25 192-216 10-34 (192)
403 2jeo_A Uridine-cytidine kinase 91.6 0.098 3.4E-06 53.2 3.5 24 193-216 24-47 (245)
404 1z6g_A Guanylate kinase; struc 91.5 0.086 2.9E-06 52.6 2.9 23 194-216 23-45 (218)
405 4e22_A Cytidylate kinase; P-lo 91.5 0.1 3.5E-06 53.3 3.6 23 194-216 27-49 (252)
406 4h09_A Hypothetical leucine ri 91.5 0.75 2.6E-05 50.0 10.9 122 568-704 213-338 (379)
407 1aky_A Adenylate kinase; ATP:A 91.4 0.094 3.2E-06 52.3 3.1 23 194-216 4-26 (220)
408 2qe7_A ATP synthase subunit al 91.4 0.29 1E-05 54.2 7.2 86 193-282 161-263 (502)
409 1s96_A Guanylate kinase, GMP k 91.4 0.11 3.7E-06 51.8 3.5 24 193-216 15-38 (219)
410 2pez_A Bifunctional 3'-phospho 91.3 0.11 3.7E-06 49.9 3.3 24 193-216 4-27 (179)
411 2wwf_A Thymidilate kinase, put 91.3 0.11 3.9E-06 51.3 3.6 24 193-216 9-32 (212)
412 3tif_A Uncharacterized ABC tra 91.3 0.16 5.4E-06 51.2 4.6 23 194-216 31-53 (235)
413 2pbr_A DTMP kinase, thymidylat 91.3 0.091 3.1E-06 51.1 2.8 21 196-216 2-22 (195)
414 2r9v_A ATP synthase subunit al 91.3 0.3 1E-05 54.1 7.0 86 193-282 174-276 (515)
415 3vr4_D V-type sodium ATPase su 91.2 0.24 8.4E-06 54.1 6.2 86 195-282 152-257 (465)
416 1sq5_A Pantothenate kinase; P- 91.1 0.22 7.4E-06 52.6 5.7 25 192-216 78-102 (308)
417 2onk_A Molybdate/tungstate ABC 91.1 0.12 4E-06 52.3 3.5 24 192-216 23-46 (240)
418 2wsm_A Hydrogenase expression/ 91.1 0.13 4.6E-06 51.1 3.9 26 192-217 28-53 (221)
419 3ozx_A RNAse L inhibitor; ATP 91.1 0.44 1.5E-05 54.3 8.7 24 193-216 24-47 (538)
420 1zd8_A GTP:AMP phosphotransfer 91.1 0.099 3.4E-06 52.5 2.9 24 193-216 6-29 (227)
421 3j16_B RLI1P; ribosome recycli 91.0 1 3.5E-05 52.0 11.7 24 193-216 102-125 (608)
422 2pcj_A ABC transporter, lipopr 91.0 0.15 5.1E-06 51.0 4.1 23 194-216 30-52 (224)
423 1zak_A Adenylate kinase; ATP:A 91.0 0.095 3.2E-06 52.4 2.7 24 193-216 4-27 (222)
424 1q57_A DNA primase/helicase; d 91.0 0.76 2.6E-05 52.2 10.6 55 193-250 241-295 (503)
425 2i3b_A HCR-ntpase, human cance 91.0 0.1 3.4E-06 50.6 2.7 22 196-217 3-24 (189)
426 2f6r_A COA synthase, bifunctio 90.9 0.12 4.1E-06 53.7 3.5 24 192-215 73-96 (281)
427 3mfy_A V-type ATP synthase alp 90.9 0.48 1.6E-05 52.9 8.2 58 174-244 216-274 (588)
428 3oaa_A ATP synthase subunit al 90.9 0.7 2.4E-05 51.0 9.4 84 193-282 161-263 (513)
429 1gtv_A TMK, thymidylate kinase 90.8 0.07 2.4E-06 53.0 1.4 21 196-216 2-22 (214)
430 3fb4_A Adenylate kinase; psych 90.7 0.11 3.8E-06 51.6 2.8 21 196-216 2-22 (216)
431 1b0u_A Histidine permease; ABC 90.7 0.19 6.4E-06 51.6 4.6 23 194-216 32-54 (262)
432 2v54_A DTMP kinase, thymidylat 90.7 0.13 4.4E-06 50.5 3.3 22 195-216 5-26 (204)
433 2ehv_A Hypothetical protein PH 90.7 0.12 4.2E-06 52.5 3.3 24 193-216 29-52 (251)
434 1np6_A Molybdopterin-guanine d 90.6 0.15 5E-06 48.6 3.5 25 193-217 5-29 (174)
435 3p32_A Probable GTPase RV1496/ 90.6 0.22 7.5E-06 53.8 5.2 25 192-216 77-101 (355)
436 3dl0_A Adenylate kinase; phosp 90.5 0.12 4.1E-06 51.4 2.8 21 196-216 2-22 (216)
437 1g41_A Heat shock protein HSLU 90.4 0.15 5.3E-06 56.1 3.8 53 163-216 15-72 (444)
438 3nwj_A ATSK2; P loop, shikimat 90.4 0.12 4E-06 52.6 2.7 22 195-216 49-70 (250)
439 3lnc_A Guanylate kinase, GMP k 90.4 0.1 3.4E-06 52.6 2.1 23 194-216 27-50 (231)
440 2olj_A Amino acid ABC transpor 90.3 0.21 7.3E-06 51.1 4.6 23 194-216 50-72 (263)
441 2ck3_A ATP synthase subunit al 90.3 0.47 1.6E-05 52.6 7.5 100 174-282 151-271 (510)
442 3e1s_A Exodeoxyribonuclease V, 90.3 0.67 2.3E-05 53.3 9.3 104 195-312 205-314 (574)
443 1m7g_A Adenylylsulfate kinase; 90.3 0.14 4.7E-06 50.7 3.0 24 193-216 24-47 (211)
444 3b9q_A Chloroplast SRP recepto 90.2 0.14 5E-06 53.6 3.3 24 193-216 99-122 (302)
445 1vht_A Dephospho-COA kinase; s 90.2 0.16 5.3E-06 50.6 3.4 23 194-216 4-26 (218)
446 3llm_A ATP-dependent RNA helic 90.2 0.69 2.4E-05 46.4 8.4 88 195-283 77-186 (235)
447 3bk7_A ABC transporter ATP-bin 90.2 1 3.4E-05 52.2 10.6 125 195-319 383-537 (607)
448 3ake_A Cytidylate kinase; CMP 90.2 0.14 4.6E-06 50.5 2.9 21 196-216 4-24 (208)
449 2zts_A Putative uncharacterize 90.1 0.61 2.1E-05 47.2 8.0 50 193-245 29-78 (251)
450 2wjg_A FEOB, ferrous iron tran 90.1 0.19 6.6E-06 48.3 4.0 26 192-217 5-30 (188)
451 3b85_A Phosphate starvation-in 90.0 0.12 4E-06 51.0 2.2 23 195-217 23-45 (208)
452 3be4_A Adenylate kinase; malar 90.0 0.13 4.3E-06 51.3 2.5 23 194-216 5-27 (217)
453 3j16_B RLI1P; ribosome recycli 90.0 0.66 2.2E-05 53.6 8.8 125 195-319 379-533 (608)
454 3gqb_B V-type ATP synthase bet 89.9 0.23 7.8E-06 54.3 4.5 89 194-282 147-260 (464)
455 1ji0_A ABC transporter; ATP bi 89.9 0.16 5.4E-06 51.4 3.1 23 194-216 32-54 (240)
456 3cmu_A Protein RECA, recombina 89.8 0.57 2E-05 61.0 8.8 85 192-283 381-471 (2050)
457 3vr4_A V-type sodium ATPase ca 89.8 0.58 2E-05 52.4 7.7 50 174-236 221-270 (600)
458 2j37_W Signal recognition part 89.8 1.1 3.9E-05 50.2 10.3 25 192-216 99-123 (504)
459 2iw3_A Elongation factor 3A; a 89.8 1.7 5.9E-05 52.6 12.4 119 194-318 461-609 (986)
460 3r20_A Cytidylate kinase; stru 89.7 0.18 6.1E-06 50.4 3.3 23 194-216 9-31 (233)
461 1g6h_A High-affinity branched- 89.7 0.16 5.5E-06 51.9 3.1 23 194-216 33-55 (257)
462 2ged_A SR-beta, signal recogni 89.6 0.21 7.3E-06 48.3 3.8 26 192-217 46-71 (193)
463 3cmw_A Protein RECA, recombina 89.6 0.56 1.9E-05 60.2 8.4 84 193-283 382-471 (1706)
464 3a8t_A Adenylate isopentenyltr 89.6 0.19 6.6E-06 52.9 3.6 24 193-216 39-62 (339)
465 3dzd_A Transcriptional regulat 89.5 0.76 2.6E-05 49.7 8.4 47 163-217 129-175 (368)
466 3d3q_A TRNA delta(2)-isopenten 89.5 0.15 5.2E-06 53.9 2.7 22 195-216 8-29 (340)
467 2c61_A A-type ATP synthase non 89.5 0.24 8.4E-06 54.5 4.4 89 194-282 152-258 (469)
468 3thx_A DNA mismatch repair pro 89.4 0.7 2.4E-05 56.1 8.8 22 193-214 661-682 (934)
469 3qf4_A ABC transporter, ATP-bi 89.4 1.1 3.8E-05 51.8 10.3 23 194-216 369-391 (587)
470 3vkw_A Replicase large subunit 89.4 0.8 2.7E-05 50.2 8.4 104 192-315 159-271 (446)
471 2eyu_A Twitching motility prot 89.4 0.25 8.5E-06 50.6 4.2 110 193-317 24-136 (261)
472 2yl4_A ATP-binding cassette SU 89.4 0.85 2.9E-05 53.0 9.3 23 194-216 370-392 (595)
473 4eaq_A DTMP kinase, thymidylat 89.4 0.35 1.2E-05 48.4 5.2 25 193-217 25-49 (229)
474 1ak2_A Adenylate kinase isoenz 89.3 0.19 6.5E-06 50.6 3.3 24 193-216 15-38 (233)
475 4a82_A Cystic fibrosis transme 89.3 0.73 2.5E-05 53.3 8.7 23 194-216 367-389 (578)
476 1e4v_A Adenylate kinase; trans 89.3 0.16 5.6E-06 50.3 2.8 21 196-216 2-22 (214)
477 2qi9_C Vitamin B12 import ATP- 89.2 0.19 6.4E-06 51.1 3.1 22 195-216 27-48 (249)
478 1yrb_A ATP(GTP)binding protein 89.2 0.21 7.3E-06 51.2 3.6 25 192-216 12-36 (262)
479 2xb4_A Adenylate kinase; ATP-b 89.2 0.17 5.8E-06 50.6 2.8 21 196-216 2-22 (223)
480 2og2_A Putative signal recogni 89.1 0.2 6.7E-06 53.8 3.3 24 193-216 156-179 (359)
481 1oix_A RAS-related protein RAB 89.0 0.2 7E-06 48.5 3.1 24 194-217 29-52 (191)
482 2zej_A Dardarin, leucine-rich 89.0 0.19 6.5E-06 48.3 2.9 22 196-217 4-25 (184)
483 2ihy_A ABC transporter, ATP-bi 88.9 0.19 6.6E-06 52.0 3.0 23 194-216 47-69 (279)
484 2wji_A Ferrous iron transport 88.9 0.23 7.8E-06 46.8 3.3 23 195-217 4-26 (165)
485 2v9p_A Replication protein E1; 88.9 0.24 8.1E-06 51.8 3.6 24 193-216 125-148 (305)
486 3vkg_A Dynein heavy chain, cyt 88.9 0.97 3.3E-05 61.6 10.2 243 197-495 1307-1575(3245)
487 3exa_A TRNA delta(2)-isopenten 88.7 0.2 6.9E-06 52.1 2.9 22 195-216 4-25 (322)
488 3crm_A TRNA delta(2)-isopenten 88.6 0.19 6.4E-06 52.8 2.7 23 194-216 5-27 (323)
489 1nlf_A Regulatory protein REPA 88.6 0.22 7.5E-06 51.7 3.2 24 193-216 29-52 (279)
490 1pgv_A TMD-1, tropomodulin TMD 88.5 0.35 1.2E-05 46.7 4.4 68 595-663 37-109 (197)
491 1q3t_A Cytidylate kinase; nucl 88.5 0.26 8.9E-06 49.7 3.7 25 192-216 14-38 (236)
492 1svm_A Large T antigen; AAA+ f 88.5 0.41 1.4E-05 51.7 5.4 25 192-216 167-191 (377)
493 1tf7_A KAIC; homohexamer, hexa 88.5 0.41 1.4E-05 54.7 5.7 25 193-217 280-304 (525)
494 3foz_A TRNA delta(2)-isopenten 88.5 0.23 8E-06 51.5 3.2 24 193-216 9-32 (316)
495 1a7j_A Phosphoribulokinase; tr 88.4 0.13 4.3E-06 53.8 1.2 24 193-216 4-27 (290)
496 3k1j_A LON protease, ATP-depen 88.2 0.3 1E-05 57.0 4.3 42 164-217 42-83 (604)
497 2vp4_A Deoxynucleoside kinase; 88.2 0.22 7.4E-06 50.1 2.8 25 192-216 18-42 (230)
498 2f9l_A RAB11B, member RAS onco 88.2 0.23 8E-06 48.4 2.9 24 194-217 5-28 (199)
499 2iw3_A Elongation factor 3A; a 88.1 1.7 5.9E-05 52.7 10.8 51 265-317 911-961 (986)
500 3cmw_A Protein RECA, recombina 88.0 0.81 2.8E-05 58.8 8.3 84 192-282 1429-1518(1706)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=4.1e-48 Score=453.62 Aligned_cols=317 Identities=18% Similarity=0.238 Sum_probs=255.8
Q ss_pred ccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhC--ChhhhccCceeEEEEeCCCC--CHHHH
Q 037574 166 HGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFD--DSDVKANFDKRIWVSASCPR--DEIRV 241 (961)
Q Consensus 166 vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~~s~~~--~~~~~ 241 (961)
|||+.++++|.++|..... ...++|+|+||||+||||||+++|+ +.+++.+|++++||++++.+ +...+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~-------~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 203 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCD-------LDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDL 203 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTT-------SSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHH
T ss_pred CCchHHHHHHHHHHhcccC-------CCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHH
Confidence 5999999999999975422 4679999999999999999999998 67899999999999999885 89999
Q ss_pred HHHHHHHhcCCCC-------CcccHHHHHHHHHHHhcCC-ceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCC
Q 037574 242 AKAILESLKGSVS-------SQVEMETVLQYINEFVQGK-KVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRG 313 (961)
Q Consensus 242 ~~~il~~l~~~~~-------~~~~~~~~~~~l~~~l~~k-r~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 313 (961)
+..|+.+++.... +..+.+.+...+++.++++ |||||||||| +.+.+ .+ +. .+||+||||||+
T Consensus 204 ~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~---~~~~~-~~----~~-~~gs~ilvTTR~ 274 (549)
T 2a5y_B 204 FTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVV---QEETI-RW----AQ-ELRLRCLVTTRD 274 (549)
T ss_dssp HHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEEC---CHHHH-HH----HH-HTTCEEEEEESB
T ss_pred HHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCC---Cchhh-cc----cc-cCCCEEEEEcCC
Confidence 9999999986521 2234567889999999996 9999999999 33432 11 11 179999999999
Q ss_pred CcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHHHhhccC
Q 037574 314 EKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKILGSLLRF 393 (961)
Q Consensus 314 ~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~~~~l~~ 393 (961)
..++..++.. ..+|+|++|+.++||+||.+.+|.... ++.+.+++++|+++|+|+||||+++|+.|+.
T Consensus 275 ~~v~~~~~~~---------~~~~~l~~L~~~ea~~Lf~~~a~~~~~---~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~ 342 (549)
T 2a5y_B 275 VEISNAASQT---------CEFIEVTSLEIDECYDFLEAYGMPMPV---GEKEEDVLNKTIELSSGNPATLMMFFKSCEP 342 (549)
T ss_dssp GGGGGGCCSC---------EEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCS
T ss_pred HHHHHHcCCC---------CeEEECCCCCHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHHhCCChHHHHHHHHHhcc
Confidence 9998876522 167999999999999999999876432 4678889999999999999999999999976
Q ss_pred CCCHHHHHHHhhhhhcccchhhhhccCCCCcchhhhHhhhcCCChHHHHHhh-----------HhccCCCCcccChHHHH
Q 037574 394 KTSIEEWQSVLDSEIWNLDSKICKRAGVGDEYFSPLLLSYYDLSPALKKCFL-----------YCSIFPKNYEIEKDRLI 462 (961)
Q Consensus 394 ~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl-----------~~a~fp~~~~i~~~~Li 462 (961)
+ ++ +|...+.+..+.. ....+.+++.+||++||+++|.||+ |||+||+++.|+ +
T Consensus 343 ~-~w-~~~~~l~~~l~~~---------~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i 407 (549)
T 2a5y_B 343 K-TF-EKMAQLNNKLESR---------GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----V 407 (549)
T ss_dssp S-SH-HHHHHHHHHHHHH---------CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----H
T ss_pred c-hH-HHHHHhHHHhhcc---------cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----e
Confidence 6 32 2333333322221 2356899999999999999999999 999999999999 8
Q ss_pred HHHHHc--Ccccccc-cccHHHHHHHHHHHHHhCCCCcccccCCCCCeEEEEEeCchHHHHHHHhccCCcc
Q 037574 463 KLWMAQ--GYLKLLE-SEDMEVIGEEYFANLASRSLFQDFQKSEFDGRIIRCQMHPIVHEFAHFLTKSDNF 530 (961)
Q Consensus 463 ~~W~a~--g~i~~~~-~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~~Hdlv~~~a~~~~~~~~~ 530 (961)
++|+|+ ||+...+ +.+.+++++ ||++|+++||++....+ ... +|+|||+||++|++++.++++
T Consensus 408 ~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~---~~~-~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 408 KLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRM---PVL-TFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECS---SSC-EEECCHHHHHHHHTTSCTHHH
T ss_pred eeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCC---Cce-EEEeChHHHHHHHHHHHHHHH
Confidence 999999 9998776 567888888 99999999999987543 223 799999999999999988765
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=3.1e-39 Score=378.98 Aligned_cols=285 Identities=21% Similarity=0.214 Sum_probs=228.8
Q ss_pred cccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCce-eEEEEeCCCCCHHHHHH
Q 037574 165 FHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDK-RIWVSASCPRDEIRVAK 243 (961)
Q Consensus 165 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~ 243 (961)
.|||++++++|.++|... ...++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++.
T Consensus 130 ~VGRe~eLeeL~elL~~~---------d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~ 200 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL---------RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC---------CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcc---------CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHH
Confidence 599999999999999853 23689999999999999999999987788999986 99999999999988888
Q ss_pred HHHHHhcCC------CC-----CcccHHHHHHHHHHHh---cCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEE
Q 037574 244 AILESLKGS------VS-----SQVEMETVLQYINEFV---QGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILV 309 (961)
Q Consensus 244 ~il~~l~~~------~~-----~~~~~~~~~~~l~~~l---~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilv 309 (961)
.|++.+... .. ...+.+++...+++.+ .++|+|||||||| +.+.|+.+ + +||+|||
T Consensus 201 ~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVw---d~eqLe~f----~---pGSRILV 270 (1221)
T 1vt4_I 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ---NAKAWNAF----N---LSCKILL 270 (1221)
T ss_dssp HHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCC---CHHHHHHH----H---SSCCEEE
T ss_pred HHHHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcC---hHHHHHhh----C---CCeEEEE
Confidence 887754321 00 1124456677777766 6899999999999 46666654 2 6899999
Q ss_pred ecCCCcccccccccccccCCCCCcceeecC------CCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHH
Q 037574 310 TRRGEKNGTNMTEIGLGEKDGTNMTEIGLG------ELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFA 383 (961)
Q Consensus 310 TtR~~~v~~~~~~~~~~~~~~~~~~~~~l~------~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLa 383 (961)
|||+..++..+... ..+.++ +|+++|||+||.+.. +.. ..++..+| |+|+|||
T Consensus 271 TTRd~~Va~~l~g~----------~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-------~eeL~~eI---CgGLPLA 329 (1221)
T 1vt4_I 271 TTRFKQVTDFLSAA----------TTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-------PQDLPREV---LTTNPRR 329 (1221)
T ss_dssp ECSCSHHHHHHHHH----------SSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-------TTTHHHHH---CCCCHHH
T ss_pred eccChHHHHhcCCC----------eEEEecCccccCCcCHHHHHHHHHHHc-CCC-------HHHHHHHH---hCCCHHH
Confidence 99999988754432 356666 999999999999984 222 11233344 9999999
Q ss_pred HHHHHhhccCC-CCHHHHHHHhhhhhcccchhhhhccCCCCcchhhhHhhhcCCChHH-HHHhhHhccCCCCcccChHHH
Q 037574 384 VKILGSLLRFK-TSIEEWQSVLDSEIWNLDSKICKRAGVGDEYFSPLLLSYYDLSPAL-KKCFLYCSIFPKNYEIEKDRL 461 (961)
Q Consensus 384 i~~~~~~l~~~-~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~-k~cfl~~a~fp~~~~i~~~~L 461 (961)
|+++|+.|+.+ .+...|... ....+..+|.+||+.||++. |.||+|||+||+++.|+++.+
T Consensus 330 LkLaGs~Lr~k~~s~eeW~~~-----------------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elL 392 (1221)
T 1vt4_I 330 LSIIAESIRDGLATWDNWKHV-----------------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392 (1221)
T ss_dssp HHHHHHHHHHSCSSHHHHHHC-----------------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHH
T ss_pred HHHHHHHHhCCCCCHHHHhcC-----------------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence 99999999877 367788653 12458899999999999999 999999999999999999999
Q ss_pred HHHHHHcCcccccccccHHHHHHHHHHHHHhCCCCcccccCCCCCeEEEEEeCchHHHHHH
Q 037574 462 IKLWMAQGYLKLLESEDMEVIGEEYFANLASRSLFQDFQKSEFDGRIIRCQMHPIVHEFAH 522 (961)
Q Consensus 462 i~~W~a~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~~Hdlv~~~a~ 522 (961)
+.+|+++| ++.++.++++|+++||++.... .. +|+|||++++++.
T Consensus 393 a~LW~aeG----------eedAe~~L~eLvdRSLLq~d~~-----~~-rYrMHDLllELr~ 437 (1221)
T 1vt4_I 393 SLIWFDVI----------KSDVMVVVNKLHKYSLVEKQPK-----ES-TISIPSIYLELKV 437 (1221)
T ss_dssp HHHHCSSC----------SHHHHHHHHHHHTSSSSSBCSS-----SS-EEBCCCHHHHHHH
T ss_pred HHHhcCCC----------HHHHHHHHHHHHhhCCEEEeCC-----CC-EEEehHHHHHHhc
Confidence 99999987 1348889999999999998421 11 7999999999663
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.5e-38 Score=412.52 Aligned_cols=320 Identities=20% Similarity=0.252 Sum_probs=250.3
Q ss_pred cCCCCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhh-hccC-ceeEEEEeCCCC
Q 037574 159 AIDPLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDV-KANF-DKRIWVSASCPR 236 (961)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~s~~~ 236 (961)
+..+..||||++++++|.++|.... ...++|+|+||||+||||||+++|++.+. ..+| +.++||++++..
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~--------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~ 191 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLN--------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD 191 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTT--------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC
T ss_pred CCCCceeccHHHHHHHHHHHHhhcc--------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC
Confidence 3456679999999999999997643 56789999999999999999999997544 4556 577799998854
Q ss_pred C--HHHHHHHHHHHhcCCC----CCcccHHHHHHHHHHHhcCC--ceEEEeecccCCCChhhHHHHHHhccCCCCCcEEE
Q 037574 237 D--EIRVAKAILESLKGSV----SSQVEMETVLQYINEFVQGK--KVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRIL 308 (961)
Q Consensus 237 ~--~~~~~~~il~~l~~~~----~~~~~~~~~~~~l~~~l~~k--r~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~il 308 (961)
+ ....+..++..+.... ....+.+.+...++..+.++ |+|||||||| +.+.|.. .++||+||
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~---~~~~~~~-------~~~~~~il 261 (1249)
T 3sfz_A 192 KSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW---DPWVLKA-------FDNQCQIL 261 (1249)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCC---CHHHHTT-------TCSSCEEE
T ss_pred chHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCC---CHHHHHh-------hcCCCEEE
Confidence 3 3445677777776543 22356788899999999877 9999999998 4443332 36799999
Q ss_pred EecCCCcccccc-cccccccCCCCCcceeecCC-CChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHH
Q 037574 309 VTRRGEKNGTNM-TEIGLGEKDGTNMTEIGLGE-LSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKI 386 (961)
Q Consensus 309 vTtR~~~v~~~~-~~~~~~~~~~~~~~~~~l~~-L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~ 386 (961)
||||++.++..+ ... ..+++.+ |+++++++||...++... +.+.+++++|+++|+|+||||++
T Consensus 262 vTtR~~~~~~~~~~~~----------~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~ 326 (1249)
T 3sfz_A 262 LTTRDKSVTDSVMGPK----------HVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSL 326 (1249)
T ss_dssp EEESSTTTTTTCCSCB----------CCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHH
T ss_pred EEcCCHHHHHhhcCCc----------eEEEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHH
Confidence 999999998543 333 7788986 999999999999885322 33455799999999999999999
Q ss_pred HHhhccCCCCHHHHHHHhhhhhcccchhhhhcc-CCCCcchhhhHhhhcCCChHHHHHhhHhccCCCCcccChHHHHHHH
Q 037574 387 LGSLLRFKTSIEEWQSVLDSEIWNLDSKICKRA-GVGDEYFSPLLLSYYDLSPALKKCFLYCSIFPKNYEIEKDRLIKLW 465 (961)
Q Consensus 387 ~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~W 465 (961)
+|++|+.+. ..|...++.+............ ...+.+..+|.+||+.||+++|.||+|||+||+++.|+++.++.+|
T Consensus 327 ~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~ 404 (1249)
T 3sfz_A 327 IGALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLW 404 (1249)
T ss_dssp HHHHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHH
T ss_pred HHHHhhcCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHh
Confidence 999998764 3577766654332211110000 0123589999999999999999999999999999999999999999
Q ss_pred HHcCcccccccccHHHHHHHHHHHHHhCCCCcccccCCCCCeEEEEEeCchHHHHHHHhccCC
Q 037574 466 MAQGYLKLLESEDMEVIGEEYFANLASRSLFQDFQKSEFDGRIIRCQMHPIVHEFAHFLTKSD 528 (961)
Q Consensus 466 ~a~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~~Hdlv~~~a~~~~~~~ 528 (961)
.++ ++.++.++++|+++||++.... +... +|+|||+||++|+..+.++
T Consensus 405 ~~~-----------~~~~~~~l~~L~~~sl~~~~~~---~~~~-~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 405 DLE-----------TEEVEDILQEFVNKSLLFCNRN---GKSF-CYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp TCC-----------HHHHHHHHHHHHHTTSCEEEES---SSSE-EEECCHHHHHHHHHHTGGG
T ss_pred CCC-----------HHHHHHHHHHHHhccceEEecC---CCce-EEEecHHHHHHHHhhhhHH
Confidence 654 4668999999999999986543 3334 7999999999999998776
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=345.52 Aligned_cols=317 Identities=20% Similarity=0.250 Sum_probs=236.3
Q ss_pred CCCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhh-hccC-ceeEEEEeCCCCCH
Q 037574 161 DPLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDV-KANF-DKRIWVSASCPRDE 238 (961)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~s~~~~~ 238 (961)
.+..||||++++++|.++|.... +..++|+|+||||+||||||++++++.++ ..+| +.++|++++.. +.
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~--------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~ 192 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLK--------GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DK 192 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTST--------TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CH
T ss_pred CCCeecccHHHHHHHHHHHhccc--------CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-ch
Confidence 45679999999999999998542 45789999999999999999999998666 7889 58999999875 33
Q ss_pred HHHHHHH---HHHhcCC----CCCcccHHHHHHHHHHHhcC--CceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEE
Q 037574 239 IRVAKAI---LESLKGS----VSSQVEMETVLQYINEFVQG--KKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILV 309 (961)
Q Consensus 239 ~~~~~~i---l~~l~~~----~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilv 309 (961)
..++..+ +..++.. .....+.+.+...+...+.+ +++||||||+| +... +. .+ ++|++|||
T Consensus 193 ~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~---~~~~---l~-~l---~~~~~ilv 262 (591)
T 1z6t_A 193 SGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVW---DSWV---LK-AF---DSQCQILL 262 (591)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEEC---CHHH---HH-TT---CSSCEEEE
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCC---CHHH---HH-Hh---cCCCeEEE
Confidence 3344333 4444421 12335667788888888876 79999999998 3332 22 22 56899999
Q ss_pred ecCCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHHHh
Q 037574 310 TRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKILGS 389 (961)
Q Consensus 310 TtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~~~ 389 (961)
|||+..++..+... ......+++|+.+|+++||...++.. .....+.+++|+++|+|+||||..+|+
T Consensus 263 TsR~~~~~~~~~~~--------~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~ 329 (591)
T 1z6t_A 263 TTRDKSVTDSVMGP--------KYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGA 329 (591)
T ss_dssp EESCGGGGTTCCSC--------EEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHH
T ss_pred ECCCcHHHHhcCCC--------ceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHH
Confidence 99999877654321 00222346999999999999988642 122345789999999999999999999
Q ss_pred hccCCCCHHHHHHHhhhhhcccchhhhh-ccCCCCcchhhhHhhhcCCChHHHHHhhHhccCCCCcccChHHHHHHHHHc
Q 037574 390 LLRFKTSIEEWQSVLDSEIWNLDSKICK-RAGVGDEYFSPLLLSYYDLSPALKKCFLYCSIFPKNYEIEKDRLIKLWMAQ 468 (961)
Q Consensus 390 ~l~~~~~~~~w~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~W~a~ 468 (961)
.++... ..|..+++.+.......... .......+..++..||+.||++.|.||++||+||+++.|+.+.++.+|.++
T Consensus 330 ~l~~~~--~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~ 407 (591)
T 1z6t_A 330 LLRDFP--NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME 407 (591)
T ss_dssp HHHHST--TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC
T ss_pred HHhcCc--hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC
Confidence 998663 36877766543322110000 011234688999999999999999999999999999999999999999653
Q ss_pred CcccccccccHHHHHHHHHHHHHhCCCCcccccCCCCCeEEEEEeCchHHHHHHHhcc
Q 037574 469 GYLKLLESEDMEVIGEEYFANLASRSLFQDFQKSEFDGRIIRCQMHPIVHEFAHFLTK 526 (961)
Q Consensus 469 g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~~Hdlv~~~a~~~~~ 526 (961)
.+.+..++++|+++||++.... +... +|+||+++|+++.....
T Consensus 408 -----------~~~~~~~l~~L~~~~Ll~~~~~---~~~~-~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 408 -----------TEEVEDILQEFVNKSLLFCDRN---GKSF-RYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp -----------HHHHHHHHHHHHHTTSSEEEEE---TTEE-EEECCHHHHHHHHHHTG
T ss_pred -----------HHHHHHHHHHHHhCcCeEEecC---CCcc-EEEEcHHHHHHHHhhhh
Confidence 2457889999999999986432 2333 79999999999998844
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=3.3e-23 Score=247.80 Aligned_cols=346 Identities=14% Similarity=0.157 Sum_probs=251.0
Q ss_pred cCCCccEEEEEeccCCCC-----------------Cccccc--CCCCccEEEeccCCCccccccchhhhccCCcccEEEc
Q 037574 546 SHEKFPHLMITFESDQGA-----------------FPNSVY--NQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLEL 606 (961)
Q Consensus 546 ~~~~~r~l~l~~~~~~~~-----------------~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L 606 (961)
...+++.|+++.|.+... +|..+. ++++|++|.+++|. +. ..+|..+.++++|++|+|
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~--l~-~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP--NL-TKLPTFLKALPEMQLINV 280 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT--TC-SSCCTTTTTCSSCCEEEC
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc--CC-ccChHHHhcCCCCCEEEC
Confidence 357899999999998653 888888 99999999999986 33 235677899999999999
Q ss_pred cCCChhhhhhhc-ccchhhcCC------CCcceEeccCCCCcccCCc--chhccCCCcEeecCCCCCCc-ccccccccCC
Q 037574 607 SNHDNVLCKVIK-KVPKQIKRL------IHLRYLNLSKNNKIKKLPK--TLCELYNLQTLELSWCSNLR-NLPQGMGKLI 676 (961)
Q Consensus 607 ~~~~~~~~~~~~-~lp~~i~~l------~~Lr~L~L~~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~-~lP~~i~~L~ 676 (961)
++|. .... .+|..++.+ ++|++|+|++|. +..+|. .++++++|++|++++|. +. .+| .+..++
T Consensus 281 s~n~----~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip-~~~~l~ 353 (636)
T 4eco_A 281 ACNR----GISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQ-LEGKLP-AFGSEI 353 (636)
T ss_dssp TTCT----TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCC-CEEECC-CCEEEE
T ss_pred cCCC----CCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCc-Cccchh-hhCCCC
Confidence 9993 1223 588888876 999999999999 889999 99999999999999988 66 899 999999
Q ss_pred CCcEEEeCCcccccCCcCCCCCCC-CCcCCceEecCCCCCCCCCChhhhh--cccccCCceeEcCCCCCChhhhHhhccc
Q 037574 677 NLRHVVNVGTPLSYMPKGIERWSC-LRTLSEFIVSGGNDDKKASKLECLK--SLNHLQGSLNIKGLGNVDKDEIFKAELS 753 (961)
Q Consensus 677 ~L~~L~l~~~~l~~~p~~i~~L~~-L~~L~~~~~~~~~~~~~~~~l~~L~--~L~~L~~~L~i~~l~~~~~~~~~~~~l~ 753 (961)
+|++|++++|.+..+|..++.+++ |+.|.. ..+.....+..+..+. +|+.| . ++........+..+.
T Consensus 354 ~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~L---s~N~l~~lp~~~~~~~l~~L~~L----~---Ls~N~l~~~~p~~l~ 423 (636)
T 4eco_A 354 KLASLNLAYNQITEIPANFCGFTEQVENLSF---AHNKLKYIPNIFDAKSVSVMSAI----D---FSYNEIGSVDGKNFD 423 (636)
T ss_dssp EESEEECCSSEEEECCTTSEEECTTCCEEEC---CSSCCSSCCSCCCTTCSSCEEEE----E---CCSSCTTTTTTCSSC
T ss_pred CCCEEECCCCccccccHhhhhhcccCcEEEc---cCCcCcccchhhhhcccCccCEE----E---CcCCcCCCcchhhhc
Confidence 999999999999999998888887 877754 4444333333333222 34333 2 333323333333344
Q ss_pred -------cccccCceeEEecCCCCcCCCccchHHHHhcCCCCCCcCceEEeeecCccc-ccccc------ccccCceEEE
Q 037574 754 -------KREKLLALGISFDRDDEEGRKKEDDEAVVEGLELPSNLESMEMFYYRGESI-SLMMI------MLSNKLRSLT 819 (961)
Q Consensus 754 -------~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~-~~~~~------~~l~~L~~L~ 819 (961)
.+++|+.|+++.+.... .....+ ..+++|+.|+++++....+ .+... ..+++|+.|+
T Consensus 424 ~~~~~~~~~~~L~~L~Ls~N~l~~------lp~~~~---~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~ 494 (636)
T 4eco_A 424 PLDPTPFKGINVSSINLSNNQISK------FPKELF---STGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSID 494 (636)
T ss_dssp TTCSSCCCCCCEEEEECCSSCCCS------CCTHHH---HTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEE
T ss_pred ccccccccCCCCCEEECcCCccCc------CCHHHH---ccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEE
Confidence 66799999999886541 011122 2347899999999988766 22221 1133899999
Q ss_pred EeCCCCCCcCCC-CC--CCCccceeeeccccCceEeCccccccCCCCCCCcccccCcccceeeccccccccccccccccC
Q 037574 820 LDRCVNLKQLPG-LG--GLPSLESLTLRNMKRIEKVGNEFLLTDRTSSTGTAVSAFPKLKSLVFLKMKAWREWKYKTKRG 896 (961)
Q Consensus 820 L~~~~~~~~l~~-l~--~lp~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~ 896 (961)
|++|. +..+|. +. .+++|+.|+|+++ .++.+|..+ ..+++|+.|.+.++..+..-......+
T Consensus 495 Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~-------------~~l~~L~~L~Ls~N~~ls~N~l~~~~p 559 (636)
T 4eco_A 495 LRFNK-LTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQP-------------LNSSTLKGFGIRNQRDAQGNRTLREWP 559 (636)
T ss_dssp CCSSC-CCBCCGGGSTTTCTTCCEEECCSS-CCSSCCCGG-------------GGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred CcCCc-CCccChhhhhccCCCcCEEECCCC-CCCCcChhh-------------hcCCCCCEEECCCCcccccCcccccCh
Confidence 99984 557773 44 8999999999994 566565542 468899999997654221111100113
Q ss_pred cccccccccceecccccccCcCCCCCCCCCCCCeEEEcccc
Q 037574 897 KHYKIMPCLCSLTIGYCNELEMLPAEHFPDTLKDLKIISCS 937 (961)
Q Consensus 897 ~~~~~~p~L~~L~i~~C~~L~~lp~~~l~~sL~~L~i~~c~ 937 (961)
.....+++|+.|++++| ++..+|.... ++|+.|++++|+
T Consensus 560 ~~l~~l~~L~~L~Ls~N-~l~~ip~~~~-~~L~~L~Ls~N~ 598 (636)
T 4eco_A 560 EGITLCPSLTQLQIGSN-DIRKVNEKIT-PNISVLDIKDNP 598 (636)
T ss_dssp TTGGGCSSCCEEECCSS-CCCBCCSCCC-TTCCEEECCSCT
T ss_pred HHHhcCCCCCEEECCCC-cCCccCHhHh-CcCCEEECcCCC
Confidence 45568999999999996 5699998754 459999999996
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=1e-22 Score=247.26 Aligned_cols=347 Identities=13% Similarity=0.138 Sum_probs=248.1
Q ss_pred cCCCccEEEEEeccCCC-----------------CCccccc--CCCCccEEEeccCCCccccccchhhhccCCcccEEEc
Q 037574 546 SHEKFPHLMITFESDQG-----------------AFPNSVY--NQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLEL 606 (961)
Q Consensus 546 ~~~~~r~l~l~~~~~~~-----------------~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L 606 (961)
..++++.|+++.|.+.. .+|..+. .+++|++|.+++|. +. ..+|..|.++++|++|+|
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~--l~-~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP--NM-TQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT--TC-CSCCGGGGGCSSCCEEEC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC--CC-ccChHHHhCCCCCCEEEC
Confidence 35689999999999865 2788877 99999999999986 33 235677999999999999
Q ss_pred cCCChhhhhhhc-ccchhhcCCC-------CcceEeccCCCCcccCCc--chhccCCCcEeecCCCCCCcccccccccCC
Q 037574 607 SNHDNVLCKVIK-KVPKQIKRLI-------HLRYLNLSKNNKIKKLPK--TLCELYNLQTLELSWCSNLRNLPQGMGKLI 676 (961)
Q Consensus 607 ~~~~~~~~~~~~-~lp~~i~~l~-------~Lr~L~L~~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~ 676 (961)
++|. .... .+|..++.+. +|++|+|++|. +..+|. .++++++|++|++++|. +..+| .++.++
T Consensus 523 s~N~----~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~ 595 (876)
T 4ecn_A 523 ACNR----GISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNV 595 (876)
T ss_dssp TTCT----TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTS
T ss_pred cCCC----CcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCC
Confidence 9993 1122 4777776665 99999999999 889999 99999999999999988 77999 999999
Q ss_pred CCcEEEeCCcccccCCcCCCCCCC-CCcCCceEecCCCCCCCCCChhhhhc--ccccCCceeEcCCCCCChhhh---Hhh
Q 037574 677 NLRHVVNVGTPLSYMPKGIERWSC-LRTLSEFIVSGGNDDKKASKLECLKS--LNHLQGSLNIKGLGNVDKDEI---FKA 750 (961)
Q Consensus 677 ~L~~L~l~~~~l~~~p~~i~~L~~-L~~L~~~~~~~~~~~~~~~~l~~L~~--L~~L~~~L~i~~l~~~~~~~~---~~~ 750 (961)
+|++|+++.|.+..+|..+..+++ |+.|.. ..+.+...+..+..+.. |..| . ++.+..... +..
T Consensus 596 ~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~L---s~N~L~~lp~~~~~~~~~~L~~L----~---Ls~N~l~g~ip~l~~ 665 (876)
T 4ecn_A 596 KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGF---SHNKLKYIPNIFNAKSVYVMGSV----D---FSYNKIGSEGRNISC 665 (876)
T ss_dssp EESEEECCSSCCSCCCTTSCEECTTCCEEEC---CSSCCCSCCSCCCTTCSSCEEEE----E---CCSSCTTTTSSSCSS
T ss_pred cceEEECcCCccccchHHHhhccccCCEEEC---cCCCCCcCchhhhccccCCCCEE----E---CcCCcCCCccccchh
Confidence 999999999999999988888887 887754 44443333333333221 3322 2 222211111 111
Q ss_pred ccc--cccccCceeEEecCCCCcCCCccchHHHHhcCCCCCCcCceEEeeecCccc-ccccc------ccccCceEEEEe
Q 037574 751 ELS--KREKLLALGISFDRDDEEGRKKEDDEAVVEGLELPSNLESMEMFYYRGESI-SLMMI------MLSNKLRSLTLD 821 (961)
Q Consensus 751 ~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~-~~~~~------~~l~~L~~L~L~ 821 (961)
.+. ..++|+.|+++.|.... .....+ ..+++|+.|+++++....+ .+... ..+++|+.|+|+
T Consensus 666 ~l~~~~~~~L~~L~Ls~N~L~~------lp~~~~---~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls 736 (876)
T 4ecn_A 666 SMDDYKGINASTVTLSYNEIQK------FPTELF---ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLR 736 (876)
T ss_dssp CTTTCCCCCEEEEECCSSCCCS------CCHHHH---HTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECC
T ss_pred hhccccCCCcCEEEccCCcCCc------cCHHHH---ccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECC
Confidence 122 34589999999886541 111222 2357899999999987766 33221 123489999999
Q ss_pred CCCCCCcCCC-CC--CCCccceeeeccccCceEeCccccccCCCCCCCcccccCcccceeeccccccccccccccccCcc
Q 037574 822 RCVNLKQLPG-LG--GLPSLESLTLRNMKRIEKVGNEFLLTDRTSSTGTAVSAFPKLKSLVFLKMKAWREWKYKTKRGKH 898 (961)
Q Consensus 822 ~~~~~~~l~~-l~--~lp~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~ 898 (961)
+| .+..+|. +. .+++|+.|+|+++ .++.+|.. ...+++|+.|.+.+++.+..-......+..
T Consensus 737 ~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~-------------l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~ 801 (876)
T 4ecn_A 737 FN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQ-------------PLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801 (876)
T ss_dssp SS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCG-------------GGGCTTCCEEECCCCBCTTCCBCCCCCCTT
T ss_pred CC-CCccchHHhhhccCCCcCEEEeCCC-CCCccchh-------------hhcCCCCCEEECCCCCCcccccccccChHH
Confidence 99 4557773 44 8999999999984 56656544 246899999999875522211111111445
Q ss_pred cccccccceecccccccCcCCCCCCCCCCCCeEEEccccc
Q 037574 899 YKIMPCLCSLTIGYCNELEMLPAEHFPDTLKDLKIISCSK 938 (961)
Q Consensus 899 ~~~~p~L~~L~i~~C~~L~~lp~~~l~~sL~~L~i~~c~~ 938 (961)
...+++|+.|++++| .+..+|....+ +|+.|+|++|+-
T Consensus 802 l~~L~~L~~L~Ls~N-~L~~Ip~~l~~-~L~~LdLs~N~l 839 (876)
T 4ecn_A 802 ITTCPSLIQLQIGSN-DIRKVDEKLTP-QLYILDIADNPN 839 (876)
T ss_dssp GGGCSSCCEEECCSS-CCCBCCSCCCS-SSCEEECCSCTT
T ss_pred HhcCCCCCEEECCCC-CCCccCHhhcC-CCCEEECCCCCC
Confidence 668999999999997 55999987444 699999999973
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=2.7e-22 Score=243.66 Aligned_cols=354 Identities=15% Similarity=0.178 Sum_probs=209.9
Q ss_pred CCCccEEEEEeccCCCCCcccccCCCCccEEEe-ccCC---C--cc----------------------------------
Q 037574 547 HEKFPHLMITFESDQGAFPNSVYNQKKLRSLGV-EHGG---G--FM---------------------------------- 586 (961)
Q Consensus 547 ~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l-~~~~---~--~~---------------------------------- 586 (961)
...+..|++.++.+.+.+|..+..+++|++|++ ++|. . +.
T Consensus 322 ~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp TSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 357888888888887778888899999999998 4432 0 00
Q ss_pred ----------------------------------ccccchhhhccCCcccEEEccCCChhhhhhhcc-------------
Q 037574 587 ----------------------------------NGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKK------------- 619 (961)
Q Consensus 587 ----------------------------------~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~------------- 619 (961)
....+|..|.++++|++|+|++|. +..
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~------Lsg~~i~~~~~~~s~n 475 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP------FTYDNIAVDWEDANSD 475 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC------CCGGGBSSSCSCTTSH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCc------CCCCcccccccccccc
Confidence 000045568889999999999984 554
Q ss_pred -----cchhhc--CCCCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCc--ccccccccCC-------CCcEEEe
Q 037574 620 -----VPKQIK--RLIHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLR--NLPQGMGKLI-------NLRHVVN 683 (961)
Q Consensus 620 -----lp~~i~--~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~--~lP~~i~~L~-------~L~~L~l 683 (961)
+|..++ ++++|++|+|++|.....+|..+++|++|++|++++|..+. .+|..++.+. +|++|++
T Consensus 476 ~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~L 555 (876)
T 4ecn_A 476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555 (876)
T ss_dssp HHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEEC
T ss_pred cccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEe
Confidence 888887 89999999999988677889889999999999999886454 4887777666 8999999
Q ss_pred CCcccccCCc--CCCCCCCCCcCCceEecCCCCCCCCCChhhhhcccccCCceeEcCCCCCChhhhHhhccccccc-cCc
Q 037574 684 VGTPLSYMPK--GIERWSCLRTLSEFIVSGGNDDKKASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKREK-LLA 760 (961)
Q Consensus 684 ~~~~l~~~p~--~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~-L~~ 760 (961)
++|.+..+|. .++++++|+.|.. ..+.+...+ .+..+.+|+ .|.+. .+... .++..+..+++ |+.
T Consensus 556 s~N~L~~ip~~~~l~~L~~L~~L~L---s~N~l~~lp-~~~~L~~L~----~L~Ls---~N~l~-~lp~~l~~l~~~L~~ 623 (876)
T 4ecn_A 556 GYNNLEEFPASASLQKMVKLGLLDC---VHNKVRHLE-AFGTNVKLT----DLKLD---YNQIE-EIPEDFCAFTDQVEG 623 (876)
T ss_dssp CSSCCCBCCCHHHHTTCTTCCEEEC---TTSCCCBCC-CCCTTSEES----EEECC---SSCCS-CCCTTSCEECTTCCE
T ss_pred eCCcCCccCChhhhhcCCCCCEEEC---CCCCcccch-hhcCCCcce----EEECc---CCccc-cchHHHhhccccCCE
Confidence 8888888888 7888877777653 343333222 333333333 33332 22111 23344666677 888
Q ss_pred eeEEecCCCCcCCCccc---------------hHHHHhcC----C--CCCCcCceEEeeecCccccccccccccCceEEE
Q 037574 761 LGISFDRDDEEGRKKED---------------DEAVVEGL----E--LPSNLESMEMFYYRGESISLMMIMLSNKLRSLT 819 (961)
Q Consensus 761 L~l~~~~~~~~~~~~~~---------------~~~~l~~l----~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 819 (961)
|+++.|........... ....+..+ . ..++|+.|+++++....++......+++|+.|+
T Consensus 624 L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~ 703 (876)
T 4ecn_A 624 LGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTII 703 (876)
T ss_dssp EECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEE
T ss_pred EECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEE
Confidence 88877754311000000 00000000 0 112455555555544433111112345566666
Q ss_pred EeCCCCCCcCCC-C--------CCCCccceeeeccccCceEeCccccccCCCCCCCcccccCcccceeeccccccccccc
Q 037574 820 LDRCVNLKQLPG-L--------GGLPSLESLTLRNMKRIEKVGNEFLLTDRTSSTGTAVSAFPKLKSLVFLKMKAWREWK 890 (961)
Q Consensus 820 L~~~~~~~~l~~-l--------~~lp~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~ 890 (961)
|++| .+..+|. + ..+++|+.|+|++| .+..+|..+. ...+++|+.|++.++ .+..+
T Consensus 704 Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~-----------~~~l~~L~~L~Ls~N-~L~~l- 768 (876)
T 4ecn_A 704 LSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFR-----------ATTLPYLSNMDVSYN-CFSSF- 768 (876)
T ss_dssp CCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGS-----------TTTCTTCCEEECCSS-CCSSC-
T ss_pred CCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchHHhh-----------hccCCCcCEEEeCCC-CCCcc-
Confidence 6655 2334442 1 12235666666653 3444443321 025677888887775 33332
Q ss_pred cccccCcccccccccceecccccc------cCcCCCCCCC-CCCCCeEEEccccc
Q 037574 891 YKTKRGKHYKIMPCLCSLTIGYCN------ELEMLPAEHF-PDTLKDLKIISCSK 938 (961)
Q Consensus 891 ~~~~~~~~~~~~p~L~~L~i~~C~------~L~~lp~~~l-~~sL~~L~i~~c~~ 938 (961)
+.....+++|+.|.+++|+ -...+|...- .++|+.|++++|.-
T Consensus 769 -----p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 769 -----PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp -----CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred -----chhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 3345578888888887632 2345553211 23488888888754
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=2e-22 Score=241.05 Aligned_cols=354 Identities=16% Similarity=0.162 Sum_probs=218.0
Q ss_pred CCccEEEEEeccCCCCCcccccCCCCccEEEeccCCC------cc-----------------------------------
Q 037574 548 EKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGG------FM----------------------------------- 586 (961)
Q Consensus 548 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~------~~----------------------------------- 586 (961)
..|+.|++.++.+.+.+|..+..+++|++|++++|.. +-
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 5788999998888778888999999999999988731 00
Q ss_pred ---------------------------------ccccchhhhccCCcccEEEccCCChhhhhhhcc--------------
Q 037574 587 ---------------------------------NGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKK-------------- 619 (961)
Q Consensus 587 ---------------------------------~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~-------------- 619 (961)
....+|..+.++++|++|+|++|. +..
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~------l~~~~~~~~~~~~~~~~ 234 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP------FVAENICEAWENENSEY 234 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC------CCGGGBSSSCSCTTSHH
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCc------cccccccccccccccch
Confidence 001145668899999999999994 555
Q ss_pred ----cchhhc--CCCCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCc--ccccccccC------CCCcEEEeCC
Q 037574 620 ----VPKQIK--RLIHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLR--NLPQGMGKL------INLRHVVNVG 685 (961)
Q Consensus 620 ----lp~~i~--~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~--~lP~~i~~L------~~L~~L~l~~ 685 (961)
+|..++ ++++|++|+|++|.....+|..++++++|++|++++|..+. .+|..++.+ ++|++|++++
T Consensus 235 ~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~ 314 (636)
T 4eco_A 235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314 (636)
T ss_dssp HHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred hcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence 899999 99999999999998677899999999999999999987455 589888887 9999999999
Q ss_pred cccccCCc--CCCCCCCCCcCCceEecCCCCC-CCCCChhhhhcccccCCceeEcCCCCCChhhhHhhccccccc-cCce
Q 037574 686 TPLSYMPK--GIERWSCLRTLSEFIVSGGNDD-KKASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKREK-LLAL 761 (961)
Q Consensus 686 ~~l~~~p~--~i~~L~~L~~L~~~~~~~~~~~-~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~-L~~L 761 (961)
|.+..+|. .++.+++|+.|.. ..+... ..+ .+..+.+|+ .|.+. ..... .++..+..+++ |+.|
T Consensus 315 n~l~~ip~~~~l~~l~~L~~L~L---~~N~l~g~ip-~~~~l~~L~----~L~L~---~N~l~-~lp~~l~~l~~~L~~L 382 (636)
T 4eco_A 315 NNLKTFPVETSLQKMKKLGMLEC---LYNQLEGKLP-AFGSEIKLA----SLNLA---YNQIT-EIPANFCGFTEQVENL 382 (636)
T ss_dssp SCCSSCCCHHHHTTCTTCCEEEC---CSCCCEEECC-CCEEEEEES----EEECC---SSEEE-ECCTTSEEECTTCCEE
T ss_pred CcCCccCchhhhccCCCCCEEeC---cCCcCccchh-hhCCCCCCC----EEECC---CCccc-cccHhhhhhcccCcEE
Confidence 99999998 7888888887754 333322 222 333333333 33322 22111 33345667777 8888
Q ss_pred eEEecCCCCcCCCccchHHHHhcCCC--CCCcCceEEeeecCccc--cccc-----cccccCceEEEEeCCCCCCcCCC-
Q 037574 762 GISFDRDDEEGRKKEDDEAVVEGLEL--PSNLESMEMFYYRGESI--SLMM-----IMLSNKLRSLTLDRCVNLKQLPG- 831 (961)
Q Consensus 762 ~l~~~~~~~~~~~~~~~~~~l~~l~~--~~~L~~L~l~~~~~~~~--~~~~-----~~~l~~L~~L~L~~~~~~~~l~~- 831 (961)
+++.+.... +...+.. .++|+.|+++++..... .++. ...+++|+.|+|++|. +..+|.
T Consensus 383 ~Ls~N~l~~----------lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~ 451 (636)
T 4eco_A 383 SFAHNKLKY----------IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKE 451 (636)
T ss_dssp ECCSSCCSS----------CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTH
T ss_pred EccCCcCcc----------cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCHH
Confidence 888776431 1112222 12556666655554332 1111 0023455555555552 234442
Q ss_pred -CCCCCccceeeeccccCceEeCcccccc----------------CCCCCCCcc--c--ccCcccceeeccccccccccc
Q 037574 832 -LGGLPSLESLTLRNMKRIEKVGNEFLLT----------------DRTSSTGTA--V--SAFPKLKSLVFLKMKAWREWK 890 (961)
Q Consensus 832 -l~~lp~L~~L~L~~~~~l~~l~~~~~~~----------------~~~~~~~~~--~--~~fp~L~~L~l~~~~~l~~~~ 890 (961)
+..+++|+.|+|+++ .+..++...+.. +.+.++... . ..+++|+.|++.++ .+..+
T Consensus 452 ~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~i- 528 (636)
T 4eco_A 452 LFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN-SFSKF- 528 (636)
T ss_dssp HHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSS-CCSSC-
T ss_pred HHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCC-CCCCc-
Confidence 223555555555552 344444332210 011111100 1 14567777777665 23332
Q ss_pred cccccCcccccccccceeccccc------ccCcCCCCCCC-CCCCCeEEEccccc
Q 037574 891 YKTKRGKHYKIMPCLCSLTIGYC------NELEMLPAEHF-PDTLKDLKIISCSK 938 (961)
Q Consensus 891 ~~~~~~~~~~~~p~L~~L~i~~C------~~L~~lp~~~l-~~sL~~L~i~~c~~ 938 (961)
+.....+++|+.|++++| .-...+|...- .++|+.|++++|.-
T Consensus 529 -----p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 529 -----PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp -----CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred -----ChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 234456777777777543 22344553211 23378888877754
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=3.4e-21 Score=230.56 Aligned_cols=365 Identities=18% Similarity=0.117 Sum_probs=228.2
Q ss_pred CcCCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhccc-chh
Q 037574 545 SSHEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKV-PKQ 623 (961)
Q Consensus 545 ~~~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~l-p~~ 623 (961)
..+.++++|++++|.+....+..+.++++|++|++++|. +. .+.+..|.++++|++|+|++| . +..+ |..
T Consensus 29 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~-~i~~~~~~~l~~L~~L~Ls~n-----~-l~~~~p~~ 99 (606)
T 3vq2_A 29 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE--IE-TIEDKAWHGLHHLSNLILTGN-----P-IQSFSPGS 99 (606)
T ss_dssp TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC--CC-EECTTTTTTCTTCCEEECTTC-----C-CCCCCTTS
T ss_pred CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc--cc-ccCHHHhhchhhcCEeECCCC-----c-ccccChhh
Confidence 356789999999999865556688999999999999986 43 445677899999999999999 4 6665 888
Q ss_pred hcCCCCcceEeccCCCCcccCC-cchhccCCCcEeecCCCCCCc--ccccccccCCCCcEEEeCCcccccCCc-CCCCCC
Q 037574 624 IKRLIHLRYLNLSKNNKIKKLP-KTLCELYNLQTLELSWCSNLR--NLPQGMGKLINLRHVVNVGTPLSYMPK-GIERWS 699 (961)
Q Consensus 624 i~~l~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~--~lP~~i~~L~~L~~L~l~~~~l~~~p~-~i~~L~ 699 (961)
|+++++|++|+|++|. +..+| ..++++++|++|++++|. +. .+|..++++++|++|++++|.+..++. .++.++
T Consensus 100 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 177 (606)
T 3vq2_A 100 FSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177 (606)
T ss_dssp STTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHH
T ss_pred cCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCcceecChhhhhhhh
Confidence 9999999999999999 77776 779999999999999988 55 579999999999999999998887654 466677
Q ss_pred CCCc-CCceEecCCCCCCCCCChhhhhcccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCc---
Q 037574 700 CLRT-LSEFIVSGGNDDKKASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKK--- 775 (961)
Q Consensus 700 ~L~~-L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--- 775 (961)
+|+. +....+..+.....+.......+|+ .+.+.+.. .........+..+++|+.+.+............
T Consensus 178 ~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~----~L~L~~n~--~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~ 251 (606)
T 3vq2_A 178 ENPQVNLSLDMSLNPIDFIQDQAFQGIKLH----ELTLRGNF--NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE 251 (606)
T ss_dssp HCTTCCCEEECTTCCCCEECTTTTTTCEEE----EEEEESCC--SCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCC
T ss_pred ccccccceeeccCCCcceeCcccccCceee----eeeccCCc--cchhHHHHHhccccccccccccccccccCCcccccC
Confidence 6664 3334455444333232222222333 33333221 112334444555666666665543321100000
Q ss_pred --------------------cchHHHHhcCCCCCCcCceEEeeecCccccccccccccCceEEEEeCCCCCCcCCCCCCC
Q 037574 776 --------------------EDDEAVVEGLELPSNLESMEMFYYRGESISLMMIMLSNKLRSLTLDRCVNLKQLPGLGGL 835 (961)
Q Consensus 776 --------------------~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l 835 (961)
.........+..+++|+.|++.++....++++. .+++|+.|++++|.. ..+|.+ .+
T Consensus 252 ~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~--~~~~L~~L~l~~n~l-~~lp~~-~l 327 (606)
T 3vq2_A 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVP--KHFKWQSLSIIRCQL-KQFPTL-DL 327 (606)
T ss_dssp GGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCC--TTCCCSEEEEESCCC-SSCCCC-CC
T ss_pred hHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhcc--ccccCCEEEcccccC-cccccC-CC
Confidence 000001111344567788888777766555444 567788888887744 667766 77
Q ss_pred CccceeeeccccCceEeCccc------cccCCCCCCC-----cccccCcccceeeccccccccccccccccCcccccccc
Q 037574 836 PSLESLTLRNMKRIEKVGNEF------LLTDRTSSTG-----TAVSAFPKLKSLVFLKMKAWREWKYKTKRGKHYKIMPC 904 (961)
Q Consensus 836 p~L~~L~L~~~~~l~~l~~~~------~~~~~~~~~~-----~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~ 904 (961)
++|+.|+++++..+..++... +....+.+.. .....+++|+.|.+.++. +... +.....+++
T Consensus 328 ~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~------~~~~~~l~~ 400 (606)
T 3vq2_A 328 PFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIM------SANFMGLEE 400 (606)
T ss_dssp SSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEE------CCCCTTCTT
T ss_pred CccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccc------hhhccCCCC
Confidence 777777777764443331100 0000011000 011345556666665542 2221 223446788
Q ss_pred cceecccccccCcCCCCCCC--CCCCCeEEEcccc
Q 037574 905 LCSLTIGYCNELEMLPAEHF--PDTLKDLKIISCS 937 (961)
Q Consensus 905 L~~L~i~~C~~L~~lp~~~l--~~sL~~L~i~~c~ 937 (961)
|+.|.+++|.-....|...+ .++|+.|++++|.
T Consensus 401 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 435 (606)
T 3vq2_A 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435 (606)
T ss_dssp CCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC
T ss_pred CCeeECCCCccCCccChhhhhccccCCEEECcCCC
Confidence 88888888643333332222 3348888888876
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.86 E-value=2.4e-21 Score=231.83 Aligned_cols=364 Identities=15% Similarity=0.092 Sum_probs=221.6
Q ss_pred CcCCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcc-cchh
Q 037574 545 SSHEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKK-VPKQ 623 (961)
Q Consensus 545 ~~~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~-lp~~ 623 (961)
..+..+++|++++|.+....|..+.++++|++|++++|. +. .+.+..|.++++|++|+|++| . +.. .|..
T Consensus 30 ~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--i~-~~~~~~~~~l~~L~~L~Ls~n-----~-l~~~~~~~ 100 (606)
T 3t6q_A 30 TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ--IY-WIHEDTFQSQHRLDTLVLTAN-----P-LIFMAETA 100 (606)
T ss_dssp TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC--CC-EECTTTTTTCTTCCEEECTTC-----C-CSEECTTT
T ss_pred CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCc--cc-eeChhhccCccccCeeeCCCC-----c-ccccChhh
Confidence 356789999999999876667789999999999999986 33 445777999999999999999 4 544 4778
Q ss_pred hcCCCCcceEeccCCCCcccC-CcchhccCCCcEeecCCCCCCcccc-cccccCCCCcEEEeCCcccccCCc-CCCCCCC
Q 037574 624 IKRLIHLRYLNLSKNNKIKKL-PKTLCELYNLQTLELSWCSNLRNLP-QGMGKLINLRHVVNVGTPLSYMPK-GIERWSC 700 (961)
Q Consensus 624 i~~l~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~l~~~p~-~i~~L~~ 700 (961)
++++++|++|+|++|. +..+ |..++++++|++|++++|. +..++ ..+..+++|++|++++|.+..++. .++.+++
T Consensus 101 ~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 178 (606)
T 3t6q_A 101 LSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178 (606)
T ss_dssp TSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTT
T ss_pred hcccccccEeeccccC-cccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhcc
Confidence 9999999999999998 7776 5779999999999999987 66653 344559999999999988887643 4666777
Q ss_pred CCcCCceEecCCCCCCCCCChhhhhcccccC---------------------------------------------Ccee
Q 037574 701 LRTLSEFIVSGGNDDKKASKLECLKSLNHLQ---------------------------------------------GSLN 735 (961)
Q Consensus 701 L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~---------------------------------------------~~L~ 735 (961)
|+.+. +.+..+..............|+.|. ..+.
T Consensus 179 L~~l~-L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~ 257 (606)
T 3t6q_A 179 ATNLS-LNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE 257 (606)
T ss_dssp CCSEE-EECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEE
T ss_pred cceeE-EecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCcee
Confidence 76332 2233322211111111101111000 0011
Q ss_pred EcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHHHHhcCCCCCCcCceEEeeecCccccccccccccCc
Q 037574 736 IKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAVVEGLELPSNLESMEMFYYRGESISLMMIMLSNKL 815 (961)
Q Consensus 736 i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 815 (961)
...+............+..+++|+.|+++.+... .++..+..+++|++|+++++............+++|
T Consensus 258 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----------~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 327 (606)
T 3t6q_A 258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHLS----------ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL 327 (606)
T ss_dssp EEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS----------CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTC
T ss_pred EEEeecCccCccCHHHhccccCCCEEeccCCccC----------CCChhhcccccCCEEECccCCcCcCchhhhhccCcC
Confidence 1111222112222233566677888888776543 123344556777777777776655422222356777
Q ss_pred eEEEEeCCCCCCcCC--CCCCCCccceeeeccccCceEeC---ccccc--------cCCCCCCCc---ccccCcccceee
Q 037574 816 RSLTLDRCVNLKQLP--GLGGLPSLESLTLRNMKRIEKVG---NEFLL--------TDRTSSTGT---AVSAFPKLKSLV 879 (961)
Q Consensus 816 ~~L~L~~~~~~~~l~--~l~~lp~L~~L~L~~~~~l~~l~---~~~~~--------~~~~~~~~~---~~~~fp~L~~L~ 879 (961)
++|+|++|.....+| .++.+++|++|+++++ .+..++ ..+.. ...+.+... ....+++|+.|+
T Consensus 328 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 406 (606)
T 3t6q_A 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406 (606)
T ss_dssp SEEECCSCSSCCBCCSSTTTTCTTCCEEECCSS-CCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEE
T ss_pred CEEECCCCCcccccchhhhhccCcCCEEECCCC-ccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEE
Confidence 777777775443444 2666777777777763 333332 11100 001111111 112345666666
Q ss_pred ccccccccccccccccCcccccccccceecccccccCcCCCCCCC--CCCCCeEEEcccc
Q 037574 880 FLKMKAWREWKYKTKRGKHYKIMPCLCSLTIGYCNELEMLPAEHF--PDTLKDLKIISCS 937 (961)
Q Consensus 880 l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~l--~~sL~~L~i~~c~ 937 (961)
+.++. +..... ......+++|+.|++++| .+...+...+ .++|++|++++|.
T Consensus 407 l~~n~-l~~~~~----~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 407 LAFTR-LKVKDA----QSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp CTTCC-EECCTT----CCTTTTCTTCCEEECTTC-CCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred CCCCc-CCCccc----chhhhCcccCCEEECCCC-ccCCcCHHHHhCCCCCCEEECCCCC
Confidence 65542 222111 222456788999999886 4444433222 3349999998885
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=3.8e-21 Score=221.57 Aligned_cols=354 Identities=16% Similarity=0.154 Sum_probs=235.0
Q ss_pred cCCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhccc-chhh
Q 037574 546 SHEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKV-PKQI 624 (961)
Q Consensus 546 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~l-p~~i 624 (961)
.++++++|++++|.+....|..+..+++|++|+++++. ....+.+..|.++++|++|+|++| . +..+ |..+
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~--~~~~i~~~~~~~l~~L~~L~Ls~n-----~-l~~~~~~~~ 99 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQT--PGLVIRNNTFRGLSSLIILKLDYN-----Q-FLQLETGAF 99 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCS--TTCEECTTTTTTCTTCCEEECTTC-----T-TCEECTTTT
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCc--ccceECcccccccccCCEEeCCCC-----c-cCccChhhc
Confidence 45789999999998866667789999999999999986 322344667899999999999999 4 5554 7889
Q ss_pred cCCCCcceEeccCCCCccc-CCcc--hhccCCCcEeecCCCCCCccc-ccc-cccCCCCcEEEeCCcccccCCc-CCCCC
Q 037574 625 KRLIHLRYLNLSKNNKIKK-LPKT--LCELYNLQTLELSWCSNLRNL-PQG-MGKLINLRHVVNVGTPLSYMPK-GIERW 698 (961)
Q Consensus 625 ~~l~~Lr~L~L~~~~~i~~-lp~~--i~~L~~L~~L~l~~~~~l~~l-P~~-i~~L~~L~~L~l~~~~l~~~p~-~i~~L 698 (961)
+++++|++|+|++|. +.. +|.. +..+++|++|++++|. +..+ |.. +.++++|++|++++|.+...+. .+..+
T Consensus 100 ~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 177 (455)
T 3v47_A 100 NGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF 177 (455)
T ss_dssp TTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGG
T ss_pred cCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhhcc
Confidence 999999999999998 654 4544 8899999999999988 5555 655 7899999999999988876543 34443
Q ss_pred CCCCcCCceEecCCCCCCCCCC---hhh---hhcccccCCceeEcCCCCCChhhhHhhcc---ccccccCceeEEecCCC
Q 037574 699 SCLRTLSEFIVSGGNDDKKASK---LEC---LKSLNHLQGSLNIKGLGNVDKDEIFKAEL---SKREKLLALGISFDRDD 769 (961)
Q Consensus 699 ~~L~~L~~~~~~~~~~~~~~~~---l~~---L~~L~~L~~~L~i~~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~ 769 (961)
.. ..|....+..+........ ... +..+..|+ .|.+ +...........+ ...++|+.|.++.+...
T Consensus 178 ~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~-~L~L---s~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 252 (455)
T 3v47_A 178 QG-KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSIT-TLDL---SGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252 (455)
T ss_dssp TT-CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEE-EEEC---TTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTT
T ss_pred cc-ccccccccccCcccccchhhccccccccccccceee-eEec---CCCcccccchhhhhccccccceeeEeecccccc
Confidence 21 1222333333332211111 111 11122222 3333 3332222222222 22377888888766432
Q ss_pred CcCCC----ccchHHHHhcCCCCCCcCceEEeeecCccc--cccccccccCceEEEEeCCCCCCcCC-CCCCCCccceee
Q 037574 770 EEGRK----KEDDEAVVEGLELPSNLESMEMFYYRGESI--SLMMIMLSNKLRSLTLDRCVNLKQLP-GLGGLPSLESLT 842 (961)
Q Consensus 770 ~~~~~----~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~ 842 (961)
..... .......+..+ ..++|+.|+++++..... .++. .+++|++|+|++|......| .++.+++|+.|+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 329 (455)
T 3v47_A 253 GSSFGHTNFKDPDNFTFKGL-EASGVKTCDLSKSKIFALLKSVFS--HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329 (455)
T ss_dssp SCCTTCCSSCCCCTTTTGGG-TTSCCCEEECCSSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ccccchhhhccCcccccccc-cccCceEEEecCccccccchhhcc--cCCCCCEEECCCCcccccChhHhcCcccCCEEE
Confidence 11000 00000111111 236899999999887665 3343 78999999999985433334 688899999999
Q ss_pred eccccCceEeCccccccCCCCCCCcccccCcccceeeccccccccccccccccCcccccccccceecccccccCcCCCCC
Q 037574 843 LRNMKRIEKVGNEFLLTDRTSSTGTAVSAFPKLKSLVFLKMKAWREWKYKTKRGKHYKIMPCLCSLTIGYCNELEMLPAE 922 (961)
Q Consensus 843 L~~~~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~ 922 (961)
|+++ .+..++...+ ..+++|+.|++.++ .+..+. +.....+++|++|++++| +++.+|..
T Consensus 330 Ls~N-~l~~~~~~~~------------~~l~~L~~L~Ls~N-~l~~~~-----~~~~~~l~~L~~L~L~~N-~l~~~~~~ 389 (455)
T 3v47_A 330 LSQN-FLGSIDSRMF------------ENLDKLEVLDLSYN-HIRALG-----DQSFLGLPNLKELALDTN-QLKSVPDG 389 (455)
T ss_dssp CCSS-CCCEECGGGG------------TTCTTCCEEECCSS-CCCEEC-----TTTTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred CCCC-ccCCcChhHh------------cCcccCCEEECCCC-cccccC-----hhhccccccccEEECCCC-ccccCCHh
Confidence 9985 5676654433 46899999999987 344332 234557999999999994 78888865
Q ss_pred CC--CCCCCeEEEcccc
Q 037574 923 HF--PDTLKDLKIISCS 937 (961)
Q Consensus 923 ~l--~~sL~~L~i~~c~ 937 (961)
.+ .++|+.|++++++
T Consensus 390 ~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 390 IFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp TTTTCTTCCEEECCSSC
T ss_pred HhccCCcccEEEccCCC
Confidence 43 3459999998754
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=3.9e-21 Score=227.20 Aligned_cols=360 Identities=16% Similarity=0.166 Sum_probs=229.4
Q ss_pred cCCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccch-hh
Q 037574 546 SHEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPK-QI 624 (961)
Q Consensus 546 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~-~i 624 (961)
..+.+++|++++|.+....|..+..+++|++|++++|. +. ...+..|.++++|++|+|++| . +..+|. .+
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--i~-~~~~~~~~~l~~L~~L~Ls~n-----~-l~~~~~~~~ 94 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR--IN-TIEGDAFYSLGSLEHLDLSDN-----H-LSSLSSSWF 94 (549)
T ss_dssp CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC--CC-EECTTTTTTCTTCCEEECTTS-----C-CCSCCHHHH
T ss_pred CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCC--cC-ccChhhccccccCCEEECCCC-----c-cCccCHHHh
Confidence 34689999999999866556789999999999999987 43 445667899999999999999 4 666654 49
Q ss_pred cCCCCcceEeccCCCCccc--CCcchhccCCCcEeecCCCCCCcccc-cccccCCCCcEEEeCCccccc-CCcCCCCCCC
Q 037574 625 KRLIHLRYLNLSKNNKIKK--LPKTLCELYNLQTLELSWCSNLRNLP-QGMGKLINLRHVVNVGTPLSY-MPKGIERWSC 700 (961)
Q Consensus 625 ~~l~~Lr~L~L~~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~l~~-~p~~i~~L~~ 700 (961)
+++++|++|+|++|. +.. .|..++++++|++|++++|..+..+| ..+..+++|++|++++|.+.. .|..++.+++
T Consensus 95 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 173 (549)
T 2z81_A 95 GPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173 (549)
T ss_dssp TTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred ccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcccc
Confidence 999999999999998 774 46789999999999999988677787 578899999999998887775 5566666655
Q ss_pred CCcCC---------------------ceEecCCCCCCCC---CC-hhhhhc-------------------------cccc
Q 037574 701 LRTLS---------------------EFIVSGGNDDKKA---SK-LECLKS-------------------------LNHL 730 (961)
Q Consensus 701 L~~L~---------------------~~~~~~~~~~~~~---~~-l~~L~~-------------------------L~~L 730 (961)
|++|. ...+..+...... .. ...+.+ +..|
T Consensus 174 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L 253 (549)
T 2z81_A 174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253 (549)
T ss_dssp EEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC
T ss_pred CceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccc
Confidence 54443 2222222211100 00 000000 0011
Q ss_pred CCceeEc------------------------------CCCCCCh------h-------------------hhHhhcc-cc
Q 037574 731 QGSLNIK------------------------------GLGNVDK------D-------------------EIFKAEL-SK 754 (961)
Q Consensus 731 ~~~L~i~------------------------------~l~~~~~------~-------------------~~~~~~l-~~ 754 (961)
. .+.+. +...... . ...+..+ ..
T Consensus 254 ~-~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~ 332 (549)
T 2z81_A 254 S-EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQH 332 (549)
T ss_dssp C-EEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHH
T ss_pred c-ccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhc
Confidence 1 11111 0000000 0 0000111 23
Q ss_pred ccccCceeEEecCCCCcCCCccchHHH---HhcCCCCCCcCceEEeeecCccccc--cccccccCceEEEEeCCCCCCcC
Q 037574 755 REKLLALGISFDRDDEEGRKKEDDEAV---VEGLELPSNLESMEMFYYRGESISL--MMIMLSNKLRSLTLDRCVNLKQL 829 (961)
Q Consensus 755 ~~~L~~L~l~~~~~~~~~~~~~~~~~~---l~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~l 829 (961)
+++|+.|+++.+... ... ...+..+++|+.|+++++....++. .....+++|++|+|++| .+..+
T Consensus 333 l~~L~~L~Ls~N~l~---------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l 402 (549)
T 2z81_A 333 LKSLEFLDLSENLMV---------EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPM 402 (549)
T ss_dssp CTTCCEEECCSSCCC---------HHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC-CCCCC
T ss_pred CccccEEEccCCccc---------cccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC-CCccC
Confidence 556666666665432 112 2234556788888888887655421 11336888999999888 45566
Q ss_pred C-CCCCCCccceeeeccccCceEeCcccc------ccCCCCCCCcccccCcccceeeccccccccccccccccCcccccc
Q 037574 830 P-GLGGLPSLESLTLRNMKRIEKVGNEFL------LTDRTSSTGTAVSAFPKLKSLVFLKMKAWREWKYKTKRGKHYKIM 902 (961)
Q Consensus 830 ~-~l~~lp~L~~L~L~~~~~l~~l~~~~~------~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 902 (961)
| .++.+++|++|+++++ .++.++..+. ..+.+.++.. ...+++|+.|++.++ ++..+.. ...+
T Consensus 403 p~~~~~~~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~Ls~N~l~~~-~~~l~~L~~L~Ls~N-~l~~ip~-------~~~l 472 (549)
T 2z81_A 403 PDSCQWPEKMRFLNLSST-GIRVVKTCIPQTLEVLDVSNNNLDSF-SLFLPRLQELYISRN-KLKTLPD-------ASLF 472 (549)
T ss_dssp CSCCCCCTTCCEEECTTS-CCSCCCTTSCTTCSEEECCSSCCSCC-CCCCTTCCEEECCSS-CCSSCCC-------GGGC
T ss_pred ChhhcccccccEEECCCC-CcccccchhcCCceEEECCCCChhhh-cccCChhcEEECCCC-ccCcCCC-------cccC
Confidence 6 4677889999999884 3555543221 1122233322 246778888888776 4443321 2468
Q ss_pred cccceecccccccCcCCCCCCC--CCCCCeEEEcccc
Q 037574 903 PCLCSLTIGYCNELEMLPAEHF--PDTLKDLKIISCS 937 (961)
Q Consensus 903 p~L~~L~i~~C~~L~~lp~~~l--~~sL~~L~i~~c~ 937 (961)
++|+.|++++| +++.+|...+ ..+|+.|++++++
T Consensus 473 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 473 PVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp TTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred ccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence 89999999985 7777765433 3449999998765
No 13
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=2.4e-20 Score=206.53 Aligned_cols=301 Identities=15% Similarity=0.214 Sum_probs=193.9
Q ss_pred CCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcC
Q 037574 547 HEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKR 626 (961)
Q Consensus 547 ~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~ 626 (961)
.++++++.+.++.+. .++ .+..+++|++|++++|. +. . .+. +..+++|++|++++|. +..+| .+..
T Consensus 43 l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~--i~-~-~~~-~~~l~~L~~L~L~~n~------i~~~~-~~~~ 108 (347)
T 4fmz_A 43 LESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQ--IT-D-ISP-LSNLVKLTNLYIGTNK------ITDIS-ALQN 108 (347)
T ss_dssp HTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSC--CC-C-CGG-GTTCTTCCEEECCSSC------CCCCG-GGTT
T ss_pred cccccEEEEeCCccc-cch-hhhhcCCccEEEccCCc--cc-c-chh-hhcCCcCCEEEccCCc------ccCch-HHcC
Confidence 467888888887773 344 47778888888888875 32 2 223 7788888888888883 66665 4888
Q ss_pred CCCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcccccCCcCCCCCCCCCcCCc
Q 037574 627 LIHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLSYMPKGIERWSCLRTLSE 706 (961)
Q Consensus 627 l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~~~p~~i~~L~~L~~L~~ 706 (961)
+++|++|++++|. +..+|. +..+++|++|++++|..+..++ .+..+++|++|++++|.+..++. +..+++|+.|.
T Consensus 109 l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~- 183 (347)
T 4fmz_A 109 LTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLS- 183 (347)
T ss_dssp CTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEE-
T ss_pred CCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEE-
Confidence 8888888888888 777776 8888888888888887555554 47888888888888777766554 44444444443
Q ss_pred eEecCCCCCCCCCChhhhhcccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHHHHhcCC
Q 037574 707 FIVSGGNDDKKASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAVVEGLE 786 (961)
Q Consensus 707 ~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~ 786 (961)
+..+... .+.. +..+++|+.|+++.+.... ...+.
T Consensus 184 --l~~n~l~----~~~~----------------------------~~~l~~L~~L~l~~n~l~~-----------~~~~~ 218 (347)
T 4fmz_A 184 --LNYNQIE----DISP----------------------------LASLTSLHYFTAYVNQITD-----------ITPVA 218 (347)
T ss_dssp --CTTSCCC----CCGG----------------------------GGGCTTCCEEECCSSCCCC-----------CGGGG
T ss_pred --ccCCccc----cccc----------------------------ccCCCccceeecccCCCCC-----------Cchhh
Confidence 3332211 1111 2344556666666554321 00133
Q ss_pred CCCCcCceEEeeecCccccccccccccCceEEEEeCCCCCCcCCCCCCCCccceeeeccccCceEeCccccccCCCCCCC
Q 037574 787 LPSNLESMEMFYYRGESISLMMIMLSNKLRSLTLDRCVNLKQLPGLGGLPSLESLTLRNMKRIEKVGNEFLLTDRTSSTG 866 (961)
Q Consensus 787 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~ 866 (961)
.+++|+.|+++++.....+.+ ..+++|++|+|++| .+..++.+..+++|+.|++++| .++.++.
T Consensus 219 ~~~~L~~L~l~~n~l~~~~~~--~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~------------ 282 (347)
T 4fmz_A 219 NMTRLNSLKIGNNKITDLSPL--ANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSN-QISDISV------------ 282 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGGG--TTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCGG------------
T ss_pred cCCcCCEEEccCCccCCCcch--hcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCC-ccCCChh------------
Confidence 346777777777665555332 36777888888777 4555666777788888888774 3444311
Q ss_pred cccccCcccceeeccccccccccccccccCcccccccccceecccccccCcCC-CCCCCCCCCCeEEEcccc
Q 037574 867 TAVSAFPKLKSLVFLKMKAWREWKYKTKRGKHYKIMPCLCSLTIGYCNELEML-PAEHFPDTLKDLKIISCS 937 (961)
Q Consensus 867 ~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~C~~L~~l-p~~~l~~sL~~L~i~~c~ 937 (961)
...+++|+.|.+.+++ +.... +.....+|+|+.|++++|+ +..+ |...++. |++|++++|+
T Consensus 283 --~~~l~~L~~L~L~~n~-l~~~~-----~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~-L~~L~l~~N~ 344 (347)
T 4fmz_A 283 --LNNLSQLNSLFLNNNQ-LGNED-----MEVIGGLTNLTTLFLSQNH-ITDIRPLASLSK-MDSADFANQV 344 (347)
T ss_dssp --GGGCTTCSEEECCSSC-CCGGG-----HHHHHTCTTCSEEECCSSS-CCCCGGGGGCTT-CSEESSSCC-
T ss_pred --hcCCCCCCEEECcCCc-CCCcC-----hhHhhccccCCEEEccCCc-cccccChhhhhc-cceeehhhhc
Confidence 2467778888887763 22222 1233467888888888875 5444 3333454 8888887775
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.85 E-value=4.7e-21 Score=227.67 Aligned_cols=145 Identities=17% Similarity=0.231 Sum_probs=114.9
Q ss_pred cCCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccc-hhh
Q 037574 546 SHEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVP-KQI 624 (961)
Q Consensus 546 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp-~~i 624 (961)
.+..+++|++++|.+....+..+..+++|++|++++|. +. .+.+..|.++++|++|+|++| . +..+| ..+
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--i~-~i~~~~~~~l~~L~~L~L~~n-----~-l~~~~~~~~ 96 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE--IQ-TIEDGAYQSLSHLSTLILTGN-----P-IQSLALGAF 96 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC--CC-EECTTTTTTCTTCCEEECTTC-----C-CCEECTTTT
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECCCCc--CC-ccCcccccCchhCCEEeCcCC-----c-CCccCHhhh
Confidence 46689999999998865555678899999999999886 33 445667889999999999998 4 66554 678
Q ss_pred cCCCCcceEeccCCCCcccCCc-chhccCCCcEeecCCCCCCcc--cccccccCCCCcEEEeCCcccccCCc-CCCCCCC
Q 037574 625 KRLIHLRYLNLSKNNKIKKLPK-TLCELYNLQTLELSWCSNLRN--LPQGMGKLINLRHVVNVGTPLSYMPK-GIERWSC 700 (961)
Q Consensus 625 ~~l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~--lP~~i~~L~~L~~L~l~~~~l~~~p~-~i~~L~~ 700 (961)
+.+++|++|++++|. +..+|. .++++++|++|++++|. +.. +|..++++++|++|++++|.+..++. .++.+++
T Consensus 97 ~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 174 (570)
T 2z63_A 97 SGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174 (570)
T ss_dssp TTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHT
T ss_pred cCccccccccccccc-cccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccchhc
Confidence 999999999999998 888775 68899999999999887 554 68889999999999998887766543 3444444
Q ss_pred C
Q 037574 701 L 701 (961)
Q Consensus 701 L 701 (961)
|
T Consensus 175 L 175 (570)
T 2z63_A 175 M 175 (570)
T ss_dssp C
T ss_pred c
Confidence 4
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=1.2e-20 Score=212.37 Aligned_cols=303 Identities=16% Similarity=0.139 Sum_probs=198.4
Q ss_pred CCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccc-hhhcCCCCcceEeccCCCCcccCC-cc
Q 037574 570 NQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVP-KQIKRLIHLRYLNLSKNNKIKKLP-KT 647 (961)
Q Consensus 570 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~i~~lp-~~ 647 (961)
.+++++.|.+.++. +. .+++..|..+++|++|+|++| . +..+| ..++.+++|++|+|++|. +..+| ..
T Consensus 43 ~l~~l~~l~l~~~~--l~-~l~~~~~~~l~~L~~L~L~~n-----~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 112 (390)
T 3o6n_A 43 TLNNQKIVTFKNST--MR-KLPAALLDSFRQVELLNLNDL-----Q-IEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHV 112 (390)
T ss_dssp GGCCCSEEEEESCE--ES-EECTHHHHHCCCCSEEECTTS-----C-CCEECTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred ccCCceEEEecCCc--hh-hCChhHhcccccCcEEECCCC-----c-ccccChhhccCCCCcCEEECCCCC-CCcCCHHH
Confidence 35667777776654 32 334555677777777777776 3 55544 367777777777777777 55554 44
Q ss_pred hhccCCCcEeecCCCCCCcccccc-cccCCCCcEEEeCCcccccCCcC-CCCCCCCCcCCceEecCCCCCCCCCChhhhh
Q 037574 648 LCELYNLQTLELSWCSNLRNLPQG-MGKLINLRHVVNVGTPLSYMPKG-IERWSCLRTLSEFIVSGGNDDKKASKLECLK 725 (961)
Q Consensus 648 i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~ 725 (961)
++++++|++|++++|. +..+|.. +..+++|++|++++|.+..++.. ++.+++|+.|.. ..+.... ..+..++
T Consensus 113 ~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l---~~n~l~~--~~~~~l~ 186 (390)
T 3o6n_A 113 FQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL---SSNRLTH--VDLSLIP 186 (390)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEEC---CSSCCSB--CCGGGCT
T ss_pred hcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEEC---CCCcCCc--ccccccc
Confidence 6777777777777765 6677665 36677777777777776665443 555555555543 3332211 1222333
Q ss_pred cccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHHHHhcCCCCCCcCceEEeeecCcccc
Q 037574 726 SLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAVVEGLELPSNLESMEMFYYRGESIS 805 (961)
Q Consensus 726 ~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~ 805 (961)
+|. .+.+.. ... ..+....+|+.|+++.+.... + ....+++|+.|+++++.....+
T Consensus 187 ~L~----~L~l~~---n~l-----~~~~~~~~L~~L~l~~n~l~~----------~--~~~~~~~L~~L~l~~n~l~~~~ 242 (390)
T 3o6n_A 187 SLF----HANVSY---NLL-----STLAIPIAVEELDASHNSINV----------V--RGPVNVELTILKLQHNNLTDTA 242 (390)
T ss_dssp TCS----EEECCS---SCC-----SEEECCSSCSEEECCSSCCCE----------E--ECCCCSSCCEEECCSSCCCCCG
T ss_pred ccc----eeeccc---ccc-----cccCCCCcceEEECCCCeeee----------c--cccccccccEEECCCCCCcccH
Confidence 333 222221 100 122344678888888876532 0 1122468999999998877666
Q ss_pred ccccccccCceEEEEeCCCCCCcCC-CCCCCCccceeeeccccCceEeCccccccCCCCCCCcccccCcccceeeccccc
Q 037574 806 LMMIMLSNKLRSLTLDRCVNLKQLP-GLGGLPSLESLTLRNMKRIEKVGNEFLLTDRTSSTGTAVSAFPKLKSLVFLKMK 884 (961)
Q Consensus 806 ~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~ 884 (961)
++. .+++|++|+|++|......| .++.+++|+.|+|++ +.++.++.. ...+|+|+.|++.++
T Consensus 243 ~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~-------------~~~l~~L~~L~L~~n- 305 (390)
T 3o6n_A 243 WLL--NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN-NRLVALNLY-------------GQPIPTLKVLDLSHN- 305 (390)
T ss_dssp GGG--GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCS-SCCCEEECS-------------SSCCTTCCEEECCSS-
T ss_pred HHc--CCCCccEEECCCCcCCCcChhHccccccCCEEECCC-CcCcccCcc-------------cCCCCCCCEEECCCC-
Confidence 665 78999999999985433334 578899999999998 457766443 246899999999987
Q ss_pred cccccccccccCcccccccccceecccccccCcCCCCCCCCCCCCeEEEcccc
Q 037574 885 AWREWKYKTKRGKHYKIMPCLCSLTIGYCNELEMLPAEHFPDTLKDLKIISCS 937 (961)
Q Consensus 885 ~l~~~~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~l~~sL~~L~i~~c~ 937 (961)
.+..+.. ....+++|+.|++++| .+..+|...++. |+.|++++++
T Consensus 306 ~l~~~~~------~~~~l~~L~~L~L~~N-~i~~~~~~~~~~-L~~L~l~~N~ 350 (390)
T 3o6n_A 306 HLLHVER------NQPQFDRLENLYLDHN-SIVTLKLSTHHT-LKNLTLSHND 350 (390)
T ss_dssp CCCCCGG------GHHHHTTCSEEECCSS-CCCCCCCCTTCC-CSEEECCSSC
T ss_pred cceecCc------cccccCcCCEEECCCC-ccceeCchhhcc-CCEEEcCCCC
Confidence 4554432 3457899999999996 688888776666 9999999876
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=1e-21 Score=240.66 Aligned_cols=60 Identities=20% Similarity=0.225 Sum_probs=30.8
Q ss_pred CCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCC
Q 037574 548 EKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNH 609 (961)
Q Consensus 548 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~ 609 (961)
+++++|.+..|.+....|..+..+++|++|++.+|. +.+.++...+.++++|++|+|++|
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~--l~~~ip~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN--FSGELPMDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE--EEEECCHHHHTTCTTCCEEECCSS
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc--ccCcCCHHHHhcCCCCCEEeCcCC
Confidence 455555555555544445555555556665555554 221222333555555555555555
No 17
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.85 E-value=3.9e-20 Score=213.26 Aligned_cols=319 Identities=19% Similarity=0.245 Sum_probs=155.8
Q ss_pred CccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcCCC
Q 037574 549 KFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRLI 628 (961)
Q Consensus 549 ~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~ 628 (961)
.++.+.+..+.+. .+| .+..+++|++|++++|. +. . .+. +.++++|++|++++|. +..++. +++++
T Consensus 47 ~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~--l~-~-~~~-~~~l~~L~~L~l~~n~------l~~~~~-~~~l~ 112 (466)
T 1o6v_A 47 QVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQ--LT-D-ITP-LKNLTKLVDILMNNNQ------IADITP-LANLT 112 (466)
T ss_dssp TCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSC--CC-C-CGG-GTTCTTCCEEECCSSC------CCCCGG-GTTCT
T ss_pred cccEEecCCCCCc-cCc-chhhhcCCCEEECCCCc--cC-C-chh-hhccccCCEEECCCCc------cccChh-hcCCC
Confidence 4555555555442 233 34555566666665554 21 1 122 5555566666665552 444444 55556
Q ss_pred CcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccccccccCCCCcEEEe---------------------CCcc
Q 037574 629 HLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVN---------------------VGTP 687 (961)
Q Consensus 629 ~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l---------------------~~~~ 687 (961)
+|++|+|++|. +..+|. +.++++|++|++++|. +..+| .+..+++|++|++ ++|.
T Consensus 113 ~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 113 NLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK 188 (466)
T ss_dssp TCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEE-ECCCG-GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCC-CCCChH-HcCCCCCCEEECCCCc-cCCCh-hhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc
Confidence 66666666555 555544 5555566666665554 44443 2444555555544 4444
Q ss_pred cccCCcCCCCCCCCCcCCceEecCCCCCCCCCChhhhhcccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecC
Q 037574 688 LSYMPKGIERWSCLRTLSEFIVSGGNDDKKASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDR 767 (961)
Q Consensus 688 l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 767 (961)
+..++. +..+++|+.|. +..+... .+..+..+..|+ .+.+.+..-... ..+..+++|+.|+++.+.
T Consensus 189 l~~~~~-l~~l~~L~~L~---l~~n~l~----~~~~~~~l~~L~-~L~l~~n~l~~~-----~~l~~l~~L~~L~l~~n~ 254 (466)
T 1o6v_A 189 VSDISV-LAKLTNLESLI---ATNNQIS----DITPLGILTNLD-ELSLNGNQLKDI-----GTLASLTNLTDLDLANNQ 254 (466)
T ss_dssp CCCCGG-GGGCTTCSEEE---CCSSCCC----CCGGGGGCTTCC-EEECCSSCCCCC-----GGGGGCTTCSEEECCSSC
T ss_pred CCCChh-hccCCCCCEEE---ecCCccc----ccccccccCCCC-EEECCCCCcccc-----hhhhcCCCCCEEECCCCc
Confidence 333321 22233333222 2222211 111122222222 222222111010 123444555555555554
Q ss_pred CCCcCCCccchHHHHhcCCCCCCcCceEEeeecCccccccccccccCceEEEEeCCCCCCcCCCCCCCCccceeeecccc
Q 037574 768 DDEEGRKKEDDEAVVEGLELPSNLESMEMFYYRGESISLMMIMLSNKLRSLTLDRCVNLKQLPGLGGLPSLESLTLRNMK 847 (961)
Q Consensus 768 ~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~ 847 (961)
... ...+..+++|+.|+++++.....+.+ ..+++|+.|+|++| .+..++.++.+++|+.|++++|.
T Consensus 255 l~~-----------~~~~~~l~~L~~L~l~~n~l~~~~~~--~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 255 ISN-----------LAPLSGLTKLTELKLGANQISNISPL--AGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFNN 320 (466)
T ss_dssp CCC-----------CGGGTTCTTCSEEECCSSCCCCCGGG--TTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSSC
T ss_pred ccc-----------chhhhcCCCCCEEECCCCccCccccc--cCCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCCc
Confidence 321 00133445666666666554444222 24566666666665 34444455666666666666642
Q ss_pred CceEeCccccccCCCCCCCcccccCcccceeeccccccccccccccccCcccccccccceecccccccCcCCCCCCCCCC
Q 037574 848 RIEKVGNEFLLTDRTSSTGTAVSAFPKLKSLVFLKMKAWREWKYKTKRGKHYKIMPCLCSLTIGYCNELEMLPAEHFPDT 927 (961)
Q Consensus 848 ~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~l~~s 927 (961)
+..++. ...+++|+.|.+.++ .+... .....+++|+.|++++|+--...|...++.
T Consensus 321 -l~~~~~--------------~~~l~~L~~L~l~~n-~l~~~-------~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~- 376 (466)
T 1o6v_A 321 -ISDISP--------------VSSLTKLQRLFFYNN-KVSDV-------SSLANLTNINWLSAGHNQISDLTPLANLTR- 376 (466)
T ss_dssp -CSCCGG--------------GGGCTTCCEEECCSS-CCCCC-------GGGTTCTTCCEEECCSSCCCBCGGGTTCTT-
T ss_pred -CCCchh--------------hccCccCCEeECCCC-ccCCc-------hhhccCCCCCEEeCCCCccCccchhhcCCC-
Confidence 332211 246778888888776 33332 234578888888888875434445444455
Q ss_pred CCeEEEcccc
Q 037574 928 LKDLKIISCS 937 (961)
Q Consensus 928 L~~L~i~~c~ 937 (961)
|+.|++.+|+
T Consensus 377 L~~L~l~~n~ 386 (466)
T 1o6v_A 377 ITQLGLNDQA 386 (466)
T ss_dssp CCEEECCCEE
T ss_pred CCEEeccCCc
Confidence 8888888874
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.84 E-value=1.4e-20 Score=208.37 Aligned_cols=299 Identities=17% Similarity=0.211 Sum_probs=201.4
Q ss_pred ccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcccCCcc
Q 037574 568 VYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKKLPKT 647 (961)
Q Consensus 568 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~ 647 (961)
+..+++|++|.+.++. +. . ++. +..+++|++|++++|. +..+|. +..+++|++|++++|. +..+| .
T Consensus 40 ~~~l~~L~~L~l~~~~--i~-~-~~~-~~~~~~L~~L~l~~n~------i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~ 105 (347)
T 4fmz_A 40 QEELESITKLVVAGEK--VA-S-IQG-IEYLTNLEYLNLNGNQ------ITDISP-LSNLVKLTNLYIGTNK-ITDIS-A 105 (347)
T ss_dssp HHHHTTCSEEECCSSC--CC-C-CTT-GGGCTTCCEEECCSSC------CCCCGG-GTTCTTCCEEECCSSC-CCCCG-G
T ss_pred chhcccccEEEEeCCc--cc-c-chh-hhhcCCccEEEccCCc------cccchh-hhcCCcCCEEEccCCc-ccCch-H
Confidence 4567788888888765 22 1 232 6778888888888873 666666 7888888888888887 77775 4
Q ss_pred hhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcccccCCcCCCCCCCCCcCCceEecCCCCCCCCCChhhhhcc
Q 037574 648 LCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLSYMPKGIERWSCLRTLSEFIVSGGNDDKKASKLECLKSL 727 (961)
Q Consensus 648 i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L 727 (961)
+..+++|++|++++|. +..+|. +..+++|++|++++|.....+..+..+++|+.|. +..+.
T Consensus 106 ~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~---l~~~~-------------- 166 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLT---VTESK-------------- 166 (347)
T ss_dssp GTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEE---CCSSC--------------
T ss_pred HcCCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEE---ecCCC--------------
Confidence 7888888888888876 667765 7778888888887664433333355555554443 22221
Q ss_pred cccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHHHHhcCCCCCCcCceEEeeecCcccccc
Q 037574 728 NHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAVVEGLELPSNLESMEMFYYRGESISLM 807 (961)
Q Consensus 728 ~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~ 807 (961)
.... ..+..+++|+.|+++++.... ...+..+++|+.|++.++.......+
T Consensus 167 -------------~~~~-----~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~l~~L~~L~l~~n~l~~~~~~ 217 (347)
T 4fmz_A 167 -------------VKDV-----TPIANLTDLYSLSLNYNQIED-----------ISPLASLTSLHYFTAYVNQITDITPV 217 (347)
T ss_dssp -------------CCCC-----GGGGGCTTCSEEECTTSCCCC-----------CGGGGGCTTCCEEECCSSCCCCCGGG
T ss_pred -------------cCCc-----hhhccCCCCCEEEccCCcccc-----------cccccCCCccceeecccCCCCCCchh
Confidence 0000 014456788888888776432 11144568999999999877665333
Q ss_pred ccccccCceEEEEeCCCCCCcCCCCCCCCccceeeeccccCceEeCccccccCCCCCCCcccccCcccceeecccccccc
Q 037574 808 MIMLSNKLRSLTLDRCVNLKQLPGLGGLPSLESLTLRNMKRIEKVGNEFLLTDRTSSTGTAVSAFPKLKSLVFLKMKAWR 887 (961)
Q Consensus 808 ~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~ 887 (961)
..+++|++|+|++| .+..++.+..+++|+.|++++| .+..++. ...+++|+.|.+.++ .+.
T Consensus 218 --~~~~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~--------------~~~l~~L~~L~l~~n-~l~ 278 (347)
T 4fmz_A 218 --ANMTRLNSLKIGNN-KITDLSPLANLSQLTWLEIGTN-QISDINA--------------VKDLTKLKMLNVGSN-QIS 278 (347)
T ss_dssp --GGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCGG--------------GTTCTTCCEEECCSS-CCC
T ss_pred --hcCCcCCEEEccCC-ccCCCcchhcCCCCCEEECCCC-ccCCChh--------------HhcCCCcCEEEccCC-ccC
Confidence 37899999999998 4566667899999999999985 4554421 357899999999887 444
Q ss_pred ccccccccCcccccccccceecccccccCcCCCC---CCCCCCCCeEEEccccchhhhhhhcccCcCCccccccc
Q 037574 888 EWKYKTKRGKHYKIMPCLCSLTIGYCNELEMLPA---EHFPDTLKDLKIISCSKLEKSYEEGKAEWKMFPQIKFS 959 (961)
Q Consensus 888 ~~~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~---~~l~~sL~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~ 959 (961)
.+. ....+++|+.|++++|+ +...+. ..++. |+.|++++|+ +..... -..++++..+.++
T Consensus 279 ~~~-------~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~-L~~L~L~~n~-l~~~~~--~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 279 DIS-------VLNNLSQLNSLFLNNNQ-LGNEDMEVIGGLTN-LTTLFLSQNH-ITDIRP--LASLSKMDSADFA 341 (347)
T ss_dssp CCG-------GGGGCTTCSEEECCSSC-CCGGGHHHHHTCTT-CSEEECCSSS-CCCCGG--GGGCTTCSEESSS
T ss_pred CCh-------hhcCCCCCCEEECcCCc-CCCcChhHhhcccc-CCEEEccCCc-cccccC--hhhhhccceeehh
Confidence 442 24578999999999984 544432 22455 9999999997 333322 2234455555444
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.84 E-value=3e-20 Score=222.29 Aligned_cols=139 Identities=14% Similarity=0.133 Sum_probs=103.0
Q ss_pred cCCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhccc-chhh
Q 037574 546 SHEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKV-PKQI 624 (961)
Q Consensus 546 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~l-p~~i 624 (961)
...++++|+++.|.+....|..|.++++|++|++++|. +. ...+..|.++++|++|+|++|. +..+ |..+
T Consensus 55 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--l~-~~~~~~~~~l~~L~~L~L~~n~------i~~l~~~~~ 125 (606)
T 3t6q_A 55 RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP--LI-FMAETALSGPKALKHLFFIQTG------ISSIDFIPL 125 (606)
T ss_dssp TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC--CS-EECTTTTSSCTTCCEEECTTSC------CSCGGGSCC
T ss_pred cCccceEEECCCCccceeChhhccCccccCeeeCCCCc--cc-ccChhhhcccccccEeeccccC------cccCCcchh
Confidence 34678888888888766567778889999999998876 33 3356668888899999998883 5555 5668
Q ss_pred cCCCCcceEeccCCCCcccCC-cchhccCCCcEeecCCCCCCccc-ccccccCCCCc--EEEeCCcccccCCcCC
Q 037574 625 KRLIHLRYLNLSKNNKIKKLP-KTLCELYNLQTLELSWCSNLRNL-PQGMGKLINLR--HVVNVGTPLSYMPKGI 695 (961)
Q Consensus 625 ~~l~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~l-P~~i~~L~~L~--~L~l~~~~l~~~p~~i 695 (961)
+++++|++|+|++|. +..++ ..+..+++|++|++++|. +..+ |..+..+++|+ .|++++|.+..+++..
T Consensus 126 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~ 198 (606)
T 3t6q_A 126 HNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA 198 (606)
T ss_dssp TTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCSEEEECTTCCCCEECTTT
T ss_pred ccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCc-ccccChhhhhhhcccceeEEecCCCccCccChhH
Confidence 888888888888888 76653 334458888888888877 5555 45677788888 6777777766555443
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=2.4e-20 Score=221.79 Aligned_cols=303 Identities=17% Similarity=0.155 Sum_probs=211.7
Q ss_pred CCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccc-hhhcCCCCcceEeccCCCCcccCCc-c
Q 037574 570 NQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVP-KQIKRLIHLRYLNLSKNNKIKKLPK-T 647 (961)
Q Consensus 570 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~i~~lp~-~ 647 (961)
.+++++.|.+.++. +. .+++..|..+++|++|+|++| . +..+| ..++.+++|++|+|++|. +..+|. .
T Consensus 49 ~l~~l~~l~l~~~~--l~-~lp~~~~~~l~~L~~L~L~~n-----~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 118 (597)
T 3oja_B 49 TLNNQKIVTFKNST--MR-KLPAALLDSFRQVELLNLNDL-----Q-IEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHV 118 (597)
T ss_dssp GGCCCSEEEESSCE--ES-EECTHHHHHCCCCSEEECTTS-----C-CCEECTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred cCCCceEEEeeCCC--CC-CcCHHHHccCCCCcEEECCCC-----C-CCCCChHHhcCCCCCCEEECCCCc-CCCCCHHH
Confidence 45678888887765 33 445666788888888888888 3 55554 478888888888888888 666654 4
Q ss_pred hhccCCCcEeecCCCCCCcccccc-cccCCCCcEEEeCCcccccCCc-CCCCCCCCCcCCceEecCCCCCCCCCChhhhh
Q 037574 648 LCELYNLQTLELSWCSNLRNLPQG-MGKLINLRHVVNVGTPLSYMPK-GIERWSCLRTLSEFIVSGGNDDKKASKLECLK 725 (961)
Q Consensus 648 i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~ 725 (961)
++++++|++|++++|. +..+|.. ++.+++|++|++++|.+..+++ .++.+++|++|.. ..+.+.. ..+..++
T Consensus 119 ~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L---~~N~l~~--~~~~~l~ 192 (597)
T 3oja_B 119 FQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL---SSNRLTH--VDLSLIP 192 (597)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC---TTSCCSB--CCGGGCT
T ss_pred HcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEEC---cCCCCCC--cChhhhh
Confidence 6888888888888876 7777766 4778888888888888777665 4666777666643 3333221 1233333
Q ss_pred cccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHHHHhcCCCCCCcCceEEeeecCcccc
Q 037574 726 SLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAVVEGLELPSNLESMEMFYYRGESIS 805 (961)
Q Consensus 726 ~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~ 805 (961)
+|. .+.+.+ ... ..+....+|+.|+++++.... + .. ..+++|+.|+++++......
T Consensus 193 ~L~----~L~l~~---n~l-----~~l~~~~~L~~L~ls~n~l~~----------~-~~-~~~~~L~~L~L~~n~l~~~~ 248 (597)
T 3oja_B 193 SLF----HANVSY---NLL-----STLAIPIAVEELDASHNSINV----------V-RG-PVNVELTILKLQHNNLTDTA 248 (597)
T ss_dssp TCS----EEECCS---SCC-----SEEECCTTCSEEECCSSCCCE----------E-EC-SCCSCCCEEECCSSCCCCCG
T ss_pred hhh----hhhccc---Ccc-----ccccCCchhheeeccCCcccc----------c-cc-ccCCCCCEEECCCCCCCCCh
Confidence 333 222221 111 123445678999998876531 0 11 12368999999998877666
Q ss_pred ccccccccCceEEEEeCCCCCCcCC-CCCCCCccceeeeccccCceEeCccccccCCCCCCCcccccCcccceeeccccc
Q 037574 806 LMMIMLSNKLRSLTLDRCVNLKQLP-GLGGLPSLESLTLRNMKRIEKVGNEFLLTDRTSSTGTAVSAFPKLKSLVFLKMK 884 (961)
Q Consensus 806 ~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~ 884 (961)
++. .+++|+.|+|++|......| .++.+++|+.|+|++ +.+..++.. ...+|+|+.|++.++
T Consensus 249 ~l~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~-------------~~~l~~L~~L~Ls~N- 311 (597)
T 3oja_B 249 WLL--NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN-NRLVALNLY-------------GQPIPTLKVLDLSHN- 311 (597)
T ss_dssp GGG--GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTT-SCCCEEECS-------------SSCCTTCCEEECCSS-
T ss_pred hhc--cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCC-CCCCCCCcc-------------cccCCCCcEEECCCC-
Confidence 655 78999999999985444434 588899999999998 457766543 246899999999987
Q ss_pred cccccccccccCcccccccccceecccccccCcCCCCCCCCCCCCeEEEcccc
Q 037574 885 AWREWKYKTKRGKHYKIMPCLCSLTIGYCNELEMLPAEHFPDTLKDLKIISCS 937 (961)
Q Consensus 885 ~l~~~~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~l~~sL~~L~i~~c~ 937 (961)
.+..+. .....+++|+.|++++| .+..+|...++. |+.|++++++
T Consensus 312 ~l~~i~------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~-L~~L~l~~N~ 356 (597)
T 3oja_B 312 HLLHVE------RNQPQFDRLENLYLDHN-SIVTLKLSTHHT-LKNLTLSHND 356 (597)
T ss_dssp CCCCCG------GGHHHHTTCSEEECCSS-CCCCCCCCTTCC-CSEEECCSSC
T ss_pred CCCccC------cccccCCCCCEEECCCC-CCCCcChhhcCC-CCEEEeeCCC
Confidence 344333 24557999999999996 678888776776 9999999876
No 21
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.83 E-value=4.5e-20 Score=223.99 Aligned_cols=151 Identities=19% Similarity=0.208 Sum_probs=122.1
Q ss_pred CcCCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccch-h
Q 037574 545 SSHEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPK-Q 623 (961)
Q Consensus 545 ~~~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~-~ 623 (961)
..+.++++|++++|.+....+..+.++++|++|+++++. +. ...+..|.++++|++|+|++|. +..+|. .
T Consensus 22 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~-~~~~~~~~~l~~L~~L~L~~n~------l~~l~~~~ 92 (680)
T 1ziw_A 22 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT--IS-KLEPELCQKLPMLKVLNLQHNE------LSQLSDKT 92 (680)
T ss_dssp CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC--CC-CCCTTHHHHCTTCCEEECCSSC------CCCCCTTT
T ss_pred ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc--cC-ccCHHHHhcccCcCEEECCCCc------cCccChhh
Confidence 346789999999999866555679999999999999886 33 4457778999999999999984 778876 5
Q ss_pred hcCCCCcceEeccCCCCcccCC-cchhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcccccCCcC---CCCCC
Q 037574 624 IKRLIHLRYLNLSKNNKIKKLP-KTLCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLSYMPKG---IERWS 699 (961)
Q Consensus 624 i~~l~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~~~p~~---i~~L~ 699 (961)
++++++|++|+|++|. +..+| ..++++++|++|++++|......|..+.++++|++|+++.|.+..++.. ...++
T Consensus 93 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 171 (680)
T 1ziw_A 93 FAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANS 171 (680)
T ss_dssp TTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTC
T ss_pred hccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccc
Confidence 9999999999999998 77776 6799999999999999984344456788999999999999888776653 22345
Q ss_pred CCCcCC
Q 037574 700 CLRTLS 705 (961)
Q Consensus 700 ~L~~L~ 705 (961)
+|+.|.
T Consensus 172 ~L~~L~ 177 (680)
T 1ziw_A 172 SLKKLE 177 (680)
T ss_dssp EESEEE
T ss_pred cccEEE
Confidence 555554
No 22
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.83 E-value=6.8e-21 Score=233.36 Aligned_cols=278 Identities=20% Similarity=0.180 Sum_probs=192.5
Q ss_pred CCCccEEEEEeccCCCCCcccccCC-CCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchh-h
Q 037574 547 HEKFPHLMITFESDQGAFPNSVYNQ-KKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQ-I 624 (961)
Q Consensus 547 ~~~~r~l~l~~~~~~~~~~~~~~~~-~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~-i 624 (961)
.+++++|++..|.+...+|..+... ++|+.|++.+|. +. ...+..|.++++|++|+|++| .....+|.. +
T Consensus 268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~--l~-~~~p~~~~~l~~L~~L~L~~n-----~l~~~ip~~~l 339 (768)
T 3rgz_A 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH--FY-GAVPPFFGSCSLLESLALSSN-----NFSGELPMDTL 339 (768)
T ss_dssp CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE--EE-ECCCGGGGGCTTCCEEECCSS-----EEEEECCHHHH
T ss_pred cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc--CC-CccchHHhcCCCccEEECCCC-----cccCcCCHHHH
Confidence 4678889988888765677776664 899999999886 33 235667889999999999998 423377766 8
Q ss_pred cCCCCcceEeccCCCCcc-cCCcchhccC-CCcEeecCCCCCCccccccccc--CCCCcEEEeCCcccc-cCCcCCCCCC
Q 037574 625 KRLIHLRYLNLSKNNKIK-KLPKTLCELY-NLQTLELSWCSNLRNLPQGMGK--LINLRHVVNVGTPLS-YMPKGIERWS 699 (961)
Q Consensus 625 ~~l~~Lr~L~L~~~~~i~-~lp~~i~~L~-~L~~L~l~~~~~l~~lP~~i~~--L~~L~~L~l~~~~l~-~~p~~i~~L~ 699 (961)
+++++|++|+|++|. +. .+|..+.++. +|++|++++|.....+|..+.. +++|++|+++.|.+. .+|..++.++
T Consensus 340 ~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~ 418 (768)
T 3rgz_A 340 LKMRGLKVLDLSFNE-FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418 (768)
T ss_dssp TTCTTCCEEECCSSE-EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT
T ss_pred hcCCCCCEEeCcCCc-cCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCC
Confidence 999999999999998 55 8898898887 8999999988755566777766 788899988888776 5677777777
Q ss_pred CCCcCCceEecCCCCC-CCCCChhhhhcccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccch
Q 037574 700 CLRTLSEFIVSGGNDD-KKASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDD 778 (961)
Q Consensus 700 ~L~~L~~~~~~~~~~~-~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 778 (961)
+|+.|... .+... ..+..+..+++|+ .+.+.+ .......+..+..+++|+.|+++.|....
T Consensus 419 ~L~~L~Ls---~N~l~~~~p~~l~~l~~L~----~L~L~~---n~l~~~~p~~~~~l~~L~~L~L~~N~l~~-------- 480 (768)
T 3rgz_A 419 ELVSLHLS---FNYLSGTIPSSLGSLSKLR----DLKLWL---NMLEGEIPQELMYVKTLETLILDFNDLTG-------- 480 (768)
T ss_dssp TCCEEECC---SSEEESCCCGGGGGCTTCC----EEECCS---SCCCSCCCGGGGGCTTCCEEECCSSCCCS--------
T ss_pred CCCEEECc---CCcccCcccHHHhcCCCCC----EEECCC---CcccCcCCHHHcCCCCceEEEecCCcccC--------
Confidence 77776542 22211 1123334444433 333332 22222334456677888888888876531
Q ss_pred HHHHhcCCCCCCcCceEEeeecCccc--cccccccccCceEEEEeCCCCCCcCC-CCCCCCccceeeeccccCceEeCc
Q 037574 779 EAVVEGLELPSNLESMEMFYYRGESI--SLMMIMLSNKLRSLTLDRCVNLKQLP-GLGGLPSLESLTLRNMKRIEKVGN 854 (961)
Q Consensus 779 ~~~l~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~l~~l~~ 854 (961)
.+...+..+++|+.|+++++..... .|+. .+++|+.|+|++|.....+| .++.+++|+.|++++|+-...+|.
T Consensus 481 -~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 481 -EIPSGLSNCTNLNWISLSNNRLTGEIPKWIG--RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp -CCCGGGGGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred -cCCHHHhcCCCCCEEEccCCccCCcCChHHh--cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence 1233445567888888888876633 4555 67888888888886555666 477788888888887643334443
No 23
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=2.9e-20 Score=220.87 Aligned_cols=132 Identities=19% Similarity=0.225 Sum_probs=97.6
Q ss_pred CCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccch-hhc
Q 037574 547 HEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPK-QIK 625 (961)
Q Consensus 547 ~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~-~i~ 625 (961)
.+++++|+++.|.+....+..+.++++|++|+++++. +. ...+..|..+++|++|++++|. +..+|. .++
T Consensus 51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~--l~-~~~~~~~~~l~~L~~L~L~~n~------l~~l~~~~~~ 121 (570)
T 2z63_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP--IQ-SLALGAFSGLSSLQKLVAVETN------LASLENFPIG 121 (570)
T ss_dssp CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC--CC-EECTTTTTTCTTCCEEECTTSC------CCCSTTCSCT
T ss_pred CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc--CC-ccCHhhhcCccccccccccccc------cccCCCcccc
Confidence 4678889988887755445678888999999998886 33 3355678888999999998883 666654 588
Q ss_pred CCCCcceEeccCCCCccc--CCcchhccCCCcEeecCCCCCCccc-ccccccCCCC----cEEEeCCcccc
Q 037574 626 RLIHLRYLNLSKNNKIKK--LPKTLCELYNLQTLELSWCSNLRNL-PQGMGKLINL----RHVVNVGTPLS 689 (961)
Q Consensus 626 ~l~~Lr~L~L~~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~l-P~~i~~L~~L----~~L~l~~~~l~ 689 (961)
++++|++|++++|. +.. +|..++++++|++|++++|. +..+ |..+..+.+| ++|+++.|.+.
T Consensus 122 ~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~ 190 (570)
T 2z63_A 122 HLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190 (570)
T ss_dssp TCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred ccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhcccCCCCce
Confidence 88889999998887 664 68888888889999888876 5444 3456666666 56666555444
No 24
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.83 E-value=6.8e-20 Score=219.28 Aligned_cols=149 Identities=19% Similarity=0.211 Sum_probs=119.6
Q ss_pred cCCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccc-hhh
Q 037574 546 SHEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVP-KQI 624 (961)
Q Consensus 546 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp-~~i 624 (961)
...++++|++++|.+....|..+.++++|++|++++|. +. ...+..|.++++|++|+|++| . +..+| ..+
T Consensus 54 ~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~--l~-~~~p~~~~~l~~L~~L~L~~n-----~-l~~~~~~~~ 124 (606)
T 3vq2_A 54 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP--IQ-SFSPGSFSGLTSLENLVAVET-----K-LASLESFPI 124 (606)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC--CC-CCCTTSSTTCTTCCEEECTTS-----C-CCCSSSSCC
T ss_pred CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc--cc-ccChhhcCCcccCCEEEccCC-----c-ccccccccc
Confidence 35689999999998865557788999999999999886 33 345677899999999999999 4 66665 679
Q ss_pred cCCCCcceEeccCCCCcc--cCCcchhccCCCcEeecCCCCCCccc-ccccccCCCCc----EEEeCCcccccCCcCCCC
Q 037574 625 KRLIHLRYLNLSKNNKIK--KLPKTLCELYNLQTLELSWCSNLRNL-PQGMGKLINLR----HVVNVGTPLSYMPKGIER 697 (961)
Q Consensus 625 ~~l~~Lr~L~L~~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~l-P~~i~~L~~L~----~L~l~~~~l~~~p~~i~~ 697 (961)
+++++|++|+|++|. +. .+|..++++++|++|++++|. +..+ |..+..+.+|+ +|+++.|.+..+|.....
T Consensus 125 ~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~ 202 (606)
T 3vq2_A 125 GQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ 202 (606)
T ss_dssp TTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTT
T ss_pred CCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhccccccceeeccCCCcceeCccccc
Confidence 999999999999998 66 579999999999999999987 6555 45577766665 789988888888877655
Q ss_pred CCCCCcCC
Q 037574 698 WSCLRTLS 705 (961)
Q Consensus 698 L~~L~~L~ 705 (961)
..+|+.|.
T Consensus 203 ~~~L~~L~ 210 (606)
T 3vq2_A 203 GIKLHELT 210 (606)
T ss_dssp TCEEEEEE
T ss_pred Cceeeeee
Confidence 55555554
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.83 E-value=1.2e-19 Score=212.69 Aligned_cols=128 Identities=23% Similarity=0.236 Sum_probs=105.1
Q ss_pred cCCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhc
Q 037574 546 SHEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIK 625 (961)
Q Consensus 546 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~ 625 (961)
.++++++|++++|.+....|..+..+++|++|++++|. +. ...+..|.++++|++|+|++|. +..+|..
T Consensus 19 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--l~-~~~~~~~~~l~~L~~L~Ls~N~------l~~lp~~-- 87 (520)
T 2z7x_B 19 LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNR--IQ-YLDISVFKFNQELEYLDLSHNK------LVKISCH-- 87 (520)
T ss_dssp CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC--CC-EEEGGGGTTCTTCCEEECCSSC------CCEEECC--
T ss_pred ccccccEEECCCCcccccChhhccccccccEEecCCCc--cC-CcChHHhhcccCCCEEecCCCc------eeecCcc--
Confidence 34789999999998866556788999999999999987 43 4456778999999999999984 7788876
Q ss_pred CCCCcceEeccCCCCccc--CCcchhccCCCcEeecCCCCCCcccccccccCCCC--cEEEeCCccc
Q 037574 626 RLIHLRYLNLSKNNKIKK--LPKTLCELYNLQTLELSWCSNLRNLPQGMGKLINL--RHVVNVGTPL 688 (961)
Q Consensus 626 ~l~~Lr~L~L~~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L--~~L~l~~~~l 688 (961)
.+++|++|+|++|. +.. +|..++++++|++|++++|. +.. ..+..+++| ++|+++.|.+
T Consensus 88 ~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 88 PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeecccc
Confidence 89999999999998 665 67889999999999999887 544 456777777 9999877766
No 26
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=1.6e-19 Score=223.49 Aligned_cols=302 Identities=19% Similarity=0.190 Sum_probs=186.3
Q ss_pred cCCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhccc-chhh
Q 037574 546 SHEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKV-PKQI 624 (961)
Q Consensus 546 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~l-p~~i 624 (961)
.++++++|++++|.+....+..+.++++|++|++++|.. ...+.+..|.++++|++|+|++| . +..+ |..+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~--~~~i~~~~f~~L~~L~~L~Ls~N-----~-l~~~~p~~~ 93 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT--PLTIDKEAFRNLPNLRILDLGSS-----K-IYFLHPDAF 93 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCC--CCEECTTTTSSCTTCCEEECTTC-----C-CCEECTTSS
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCC--ccccCHHHhcCCCCCCEEECCCC-----c-CcccCHhHc
Confidence 568899999999998766678899999999999999852 22444777999999999999999 4 5554 8899
Q ss_pred cCCCCcceEeccCCCCccc-CCcc--hhccCCCcEeecCCCCCCcccc--cccccCCCCcEEEeCCcccccC-CcCCCCC
Q 037574 625 KRLIHLRYLNLSKNNKIKK-LPKT--LCELYNLQTLELSWCSNLRNLP--QGMGKLINLRHVVNVGTPLSYM-PKGIERW 698 (961)
Q Consensus 625 ~~l~~Lr~L~L~~~~~i~~-lp~~--i~~L~~L~~L~l~~~~~l~~lP--~~i~~L~~L~~L~l~~~~l~~~-p~~i~~L 698 (961)
+++++|++|+|++|. +.. +|.. ++++++|++|++++|. +..++ ..++++++|++|++++|.+... |..+..+
T Consensus 94 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 94 QGLFHLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp CSCSSCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred cCCcccCEeeCcCCC-CCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 999999999999998 654 5655 8999999999999988 55543 5789999999999988887654 3445544
Q ss_pred --CCCCcCCceEecCCCCCC-CCCChhhhhc-cc--ccCCceeEcCCCCC-Chhh-------------------------
Q 037574 699 --SCLRTLSEFIVSGGNDDK-KASKLECLKS-LN--HLQGSLNIKGLGNV-DKDE------------------------- 746 (961)
Q Consensus 699 --~~L~~L~~~~~~~~~~~~-~~~~l~~L~~-L~--~L~~~L~i~~l~~~-~~~~------------------------- 746 (961)
++|+.|.. ..+.... .+..+..+.+ +. .|+ .+.+.+..-. ....
T Consensus 172 ~~~~L~~L~L---~~n~l~~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~ 247 (844)
T 3j0a_A 172 QGKTLSFFSL---AANSLYSRVSVDWGKCMNPFRNMVLE-ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF 247 (844)
T ss_dssp HHCSSCCCEE---CCSBSCCCCCCCCCSSSCTTTTCCBS-EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSS
T ss_pred cCCccceEEC---CCCccccccccchhhcCCccccCcee-EEecCCCcCchhHHHHHHhhcCcccccceecccccccccc
Confidence 55555543 2221111 0111111111 00 111 2222111000 0000
Q ss_pred -------hHhhcccc--ccccCceeEEecCCCCcCCCccchHHHHhcCCCCCCcCceEEeeecCccccccccccccCceE
Q 037574 747 -------IFKAELSK--REKLLALGISFDRDDEEGRKKEDDEAVVEGLELPSNLESMEMFYYRGESISLMMIMLSNKLRS 817 (961)
Q Consensus 747 -------~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 817 (961)
.....+.. .++|+.|+++.+.... .....+..+++|+.|+++++............+++|++
T Consensus 248 ~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~---------~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 318 (844)
T 3j0a_A 248 GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS---------LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV 318 (844)
T ss_dssp SCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE---------ECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCE
T ss_pred cccccCCCChhhhhccccCCccEEECCCCcccc---------cChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCE
Confidence 00111111 2456666666554321 01223344567777777777655542222235677777
Q ss_pred EEEeCCCCCCcCC-CCCCCCccceeeeccccCceEeCccccccCCCCCCCcccccCcccceeecccc
Q 037574 818 LTLDRCVNLKQLP-GLGGLPSLESLTLRNMKRIEKVGNEFLLTDRTSSTGTAVSAFPKLKSLVFLKM 883 (961)
Q Consensus 818 L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~ 883 (961)
|+|++|......| .++.+++|+.|+++++ .+..++...+ ..+++|+.|.+.++
T Consensus 319 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~------------~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTF------------KFLEKLQTLDLRDN 372 (844)
T ss_dssp EEEESCCCSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSCS------------CSCCCCCEEEEETC
T ss_pred EECCCCCCCccCHHHhcCCCCCCEEECCCC-CCCccChhhh------------cCCCCCCEEECCCC
Confidence 7777774322222 4667777777777764 4554443322 34566666666654
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.82 E-value=7.7e-20 Score=211.84 Aligned_cols=147 Identities=22% Similarity=0.258 Sum_probs=77.7
Q ss_pred CCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccch-hhc
Q 037574 547 HEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPK-QIK 625 (961)
Q Consensus 547 ~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~-~i~ 625 (961)
+..++.|++++|.+....+..+..+++|++|++++|. +. .+.+..|.++++|++|+|++|. +..+|. .++
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--i~-~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~ 101 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI--VS-AVEPGAFNNLFNLRTLGLRSNR------LKLIPLGVFT 101 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC--CC-EECTTTTTTCTTCCEEECCSSC------CCSCCTTSST
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCc--cC-EeChhhhhCCccCCEEECCCCc------CCccCccccc
Confidence 4455666666665543334455556666666666554 22 2234445566666666666652 444443 245
Q ss_pred CCCCcceEeccCCCCccc-CCcchhccCCCcEeecCCCCCCccc-ccccccCCCCcEEEeCCcccccCCcC-CCCCCCCC
Q 037574 626 RLIHLRYLNLSKNNKIKK-LPKTLCELYNLQTLELSWCSNLRNL-PQGMGKLINLRHVVNVGTPLSYMPKG-IERWSCLR 702 (961)
Q Consensus 626 ~l~~Lr~L~L~~~~~i~~-lp~~i~~L~~L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~~~l~~~p~~-i~~L~~L~ 702 (961)
++++|++|+|++|. +.. .|..+.++++|++|++++|. +..+ |..+..+++|++|++++|.+..+|.. +..+++|+
T Consensus 102 ~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 179 (477)
T 2id5_A 102 GLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLI 179 (477)
T ss_dssp TCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCC
T ss_pred CCCCCCEEECCCCc-cccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCc
Confidence 56666666666665 333 23455566666666666555 3333 34455566666666655555555432 44444444
Q ss_pred cC
Q 037574 703 TL 704 (961)
Q Consensus 703 ~L 704 (961)
.|
T Consensus 180 ~L 181 (477)
T 2id5_A 180 VL 181 (477)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 28
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.82 E-value=6.9e-20 Score=214.79 Aligned_cols=137 Identities=20% Similarity=0.221 Sum_probs=112.2
Q ss_pred cEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhccc-chhhcCCCC
Q 037574 551 PHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKV-PKQIKRLIH 629 (961)
Q Consensus 551 r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l~~ 629 (961)
++++++++.+. .+|..+. ++|+.|++++|. +. ...+..|.++++|++|+|++| . +..+ |..++++++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~--i~-~~~~~~~~~l~~L~~L~Ls~n-----~-l~~~~~~~~~~l~~ 70 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNY--IS-ELWTSDILSLSKLRILIISHN-----R-IQYLDISVFKFNQE 70 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSC--CC-CCCHHHHTTCTTCCEEECCSS-----C-CCEEEGGGGTTCTT
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCc--cc-ccChhhccccccccEEecCCC-----c-cCCcChHHhhcccC
Confidence 57788888874 5676555 899999999987 43 445677999999999999999 4 6655 788999999
Q ss_pred cceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcc--cccccccCCCCcEEEeCCcccccCCcCCCCCCCC--CcCC
Q 037574 630 LRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRN--LPQGMGKLINLRHVVNVGTPLSYMPKGIERWSCL--RTLS 705 (961)
Q Consensus 630 Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~--lP~~i~~L~~L~~L~l~~~~l~~~p~~i~~L~~L--~~L~ 705 (961)
|++|+|++|. ++.+|.. .+++|++|++++|. +.. +|..++++++|++|++++|.+.. ..+..+++| +.|.
T Consensus 71 L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~ 144 (520)
T 2z7x_B 71 LEYLDLSHNK-LVKISCH--PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVL 144 (520)
T ss_dssp CCEEECCSSC-CCEEECC--CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEE
T ss_pred CCEEecCCCc-eeecCcc--ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEE
Confidence 9999999998 8999987 89999999999998 654 67899999999999998888765 345555666 4444
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.81 E-value=1.9e-19 Score=207.50 Aligned_cols=314 Identities=18% Similarity=0.202 Sum_probs=192.9
Q ss_pred cCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcccCCcch
Q 037574 569 YNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKKLPKTL 648 (961)
Q Consensus 569 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i 648 (961)
..++++++|.+.++. +. . ++. +..+++|++|+|++|. +..+|. ++++++|++|++++|. +..+|. +
T Consensus 43 ~~l~~l~~L~l~~~~--i~-~-l~~-~~~l~~L~~L~Ls~n~------l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~ 108 (466)
T 1o6v_A 43 TDLDQVTTLQADRLG--IK-S-IDG-VEYLNNLTQINFSNNQ------LTDITP-LKNLTKLVDILMNNNQ-IADITP-L 108 (466)
T ss_dssp HHHHTCCEEECCSSC--CC-C-CTT-GGGCTTCCEEECCSSC------CCCCGG-GTTCTTCCEEECCSSC-CCCCGG-G
T ss_pred hHhccccEEecCCCC--Cc-c-Ccc-hhhhcCCCEEECCCCc------cCCchh-hhccccCCEEECCCCc-cccChh-h
Confidence 346789999998876 22 2 333 7889999999999994 777776 9999999999999998 888887 9
Q ss_pred hccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcccccCCcCCCCCCCCCcCCceEecCCCCCCCCCChhhhhccc
Q 037574 649 CELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLSYMPKGIERWSCLRTLSEFIVSGGNDDKKASKLECLKSLN 728 (961)
Q Consensus 649 ~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~ 728 (961)
+++++|++|++++|. +..+|. +.++++|++|++++|.+..+| .++.+++|+.|.... . ...+..+..++
T Consensus 109 ~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~----~----~~~~~~~~~l~ 177 (466)
T 1o6v_A 109 ANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN----Q----VTDLKPLANLT 177 (466)
T ss_dssp TTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE----S----CCCCGGGTTCT
T ss_pred cCCCCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC----c----ccCchhhccCC
Confidence 999999999999987 888875 899999999999998888776 477777777776421 1 11122244444
Q ss_pred ccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHHHHhcCCCCCCcCceEEeeecCccccccc
Q 037574 729 HLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAVVEGLELPSNLESMEMFYYRGESISLMM 808 (961)
Q Consensus 729 ~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~ 808 (961)
+|+ .|.+.+..-... ..+..+++|+.|+++.+..... ..+..+++|+.|+++++....++++.
T Consensus 178 ~L~-~L~l~~n~l~~~-----~~l~~l~~L~~L~l~~n~l~~~-----------~~~~~l~~L~~L~l~~n~l~~~~~l~ 240 (466)
T 1o6v_A 178 TLE-RLDISSNKVSDI-----SVLAKLTNLESLIATNNQISDI-----------TPLGILTNLDELSLNGNQLKDIGTLA 240 (466)
T ss_dssp TCC-EEECCSSCCCCC-----GGGGGCTTCSEEECCSSCCCCC-----------GGGGGCTTCCEEECCSSCCCCCGGGG
T ss_pred CCC-EEECcCCcCCCC-----hhhccCCCCCEEEecCCccccc-----------ccccccCCCCEEECCCCCcccchhhh
Confidence 444 444433221111 1255667777777776654310 00222455666666665544433322
Q ss_pred cccccCceEEEEeCCCCCCcCCCCCCCCccceeeeccccCceEeCcc-------ccccCCCCCCCc-ccccCcccceeec
Q 037574 809 IMLSNKLRSLTLDRCVNLKQLPGLGGLPSLESLTLRNMKRIEKVGNE-------FLLTDRTSSTGT-AVSAFPKLKSLVF 880 (961)
Q Consensus 809 ~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~l~~l~~~-------~~~~~~~~~~~~-~~~~fp~L~~L~l 880 (961)
.+++|+.|+|++|. +..++.+..+++|+.|+++++ .+..++.- .+....+.+... ....+++|+.|.+
T Consensus 241 --~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L 316 (466)
T 1o6v_A 241 --SLTNLTDLDLANNQ-ISNLAPLSGLTKLTELKLGAN-QISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL 316 (466)
T ss_dssp --GCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEEC
T ss_pred --cCCCCCEEECCCCc-cccchhhhcCCCCCEEECCCC-ccCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEEC
Confidence 45556666665552 333333555555555555553 22222110 000000111110 0245677777777
Q ss_pred cccccccccccccccCcccccccccceecccccccCcCCCCCCCCCCCCeEEEcccc
Q 037574 881 LKMKAWREWKYKTKRGKHYKIMPCLCSLTIGYCNELEMLPAEHFPDTLKDLKIISCS 937 (961)
Q Consensus 881 ~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~l~~sL~~L~i~~c~ 937 (961)
.++. +.... ....+++|+.|++++| .+..++.-.-.++|+.|++++|.
T Consensus 317 ~~n~-l~~~~-------~~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 317 YFNN-ISDIS-------PVSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp CSSC-CSCCG-------GGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC
T ss_pred cCCc-CCCch-------hhccCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCCc
Confidence 7662 33222 1347888888888886 56655432223448899888875
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.81 E-value=2e-19 Score=212.65 Aligned_cols=140 Identities=18% Similarity=0.170 Sum_probs=88.6
Q ss_pred CCCCCcCceEEeeecCccc--cccccccccCceEEEEeCCCCCCcCC----CCCCCCccceeeeccccCceE-eCccccc
Q 037574 786 ELPSNLESMEMFYYRGESI--SLMMIMLSNKLRSLTLDRCVNLKQLP----GLGGLPSLESLTLRNMKRIEK-VGNEFLL 858 (961)
Q Consensus 786 ~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~~l~----~l~~lp~L~~L~L~~~~~l~~-l~~~~~~ 858 (961)
..+++|++|+++++..... .++. .+++|+.|+|++| .+..++ .++.+++|+.|+++++ .+.. ++...+.
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~ 425 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCS--TLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCA 425 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCC--SCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTS-CCBSCCSSCCCC
T ss_pred cCCCCceEEECCCCccccchhhhhc--ccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCC-cCCCccChhhhc
Confidence 3456788888888776553 3333 6778888888887 344443 3677888888888774 3444 4443221
Q ss_pred ---------cCCCCCCCcccccC-cccceeeccccccccccccccccCcccccccccceecccccccCcCCCCCCC--CC
Q 037574 859 ---------TDRTSSTGTAVSAF-PKLKSLVFLKMKAWREWKYKTKRGKHYKIMPCLCSLTIGYCNELEMLPAEHF--PD 926 (961)
Q Consensus 859 ---------~~~~~~~~~~~~~f-p~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~l--~~ 926 (961)
.+.+.++......+ ++|+.|++.++ .+..+. .....+++|+.|++++| +++.+|...+ .+
T Consensus 426 ~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip------~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~ 497 (562)
T 3a79_B 426 WAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIP------KDVTHLQALQELNVASN-QLKSVPDGVFDRLT 497 (562)
T ss_dssp CCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCC------TTTTSSCCCSEEECCSS-CCCCCCTTSTTTCT
T ss_pred CcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccC------hhhcCCCCCCEEECCCC-CCCCCCHHHHhcCC
Confidence 11222222223344 57888888776 455443 23447899999999984 7888886522 33
Q ss_pred CCCeEEEcccc
Q 037574 927 TLKDLKIISCS 937 (961)
Q Consensus 927 sL~~L~i~~c~ 937 (961)
+|+.|++++++
T Consensus 498 ~L~~L~l~~N~ 508 (562)
T 3a79_B 498 SLQYIWLHDNP 508 (562)
T ss_dssp TCCCEECCSCC
T ss_pred CCCEEEecCCC
Confidence 49999998765
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.80 E-value=4.4e-19 Score=219.63 Aligned_cols=339 Identities=17% Similarity=0.172 Sum_probs=215.0
Q ss_pred EEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhccc-chhhcCCCCcc
Q 037574 553 LMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKV-PKQIKRLIHLR 631 (961)
Q Consensus 553 l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l~~Lr 631 (961)
++.+.+.+ ..+|. -.++|++|++++|. +. .+.+..|.++++|++|+|++| ..+..+ |..++++++|+
T Consensus 9 ~dcs~~~L-~~vP~---lp~~l~~LdLs~N~--i~-~i~~~~~~~l~~L~~LdLs~n-----~~~~~i~~~~f~~L~~L~ 76 (844)
T 3j0a_A 9 AFYRFCNL-TQVPQ---VLNTTERLLLSFNY--IR-TVTASSFPFLEQLQLLELGSQ-----YTPLTIDKEAFRNLPNLR 76 (844)
T ss_dssp EEESCCCS-SCCCS---SCTTCCEEEEESCC--CC-EECSSSCSSCCSCSEEEECTT-----CCCCEECTTTTSSCTTCC
T ss_pred EEccCCCC-CCCCC---CCCCcCEEECCCCc--CC-ccChhHCcccccCeEEeCCCC-----CCccccCHHHhcCCCCCC
Confidence 44444455 44564 56899999999987 44 445667899999999999999 335566 78899999999
Q ss_pred eEeccCCCCcccC-CcchhccCCCcEeecCCCCCCcccccc--cccCCCCcEEEeCCcccccCC--cCCCCCCCCCcCCc
Q 037574 632 YLNLSKNNKIKKL-PKTLCELYNLQTLELSWCSNLRNLPQG--MGKLINLRHVVNVGTPLSYMP--KGIERWSCLRTLSE 706 (961)
Q Consensus 632 ~L~L~~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lP~~--i~~L~~L~~L~l~~~~l~~~p--~~i~~L~~L~~L~~ 706 (961)
+|+|++|. +..+ |..++++++|++|++++|.....+|.. +.++++|++|++++|.+..++ ..++++++|++|..
T Consensus 77 ~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~L 155 (844)
T 3j0a_A 77 ILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155 (844)
T ss_dssp EEECTTCC-CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEE
T ss_pred EEECCCCc-CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEEC
Confidence 99999999 6655 889999999999999999844446655 899999999999999888764 35788888888764
Q ss_pred eEecCCCCCCC-CCChhhhhcccccCCceeEcCCCCCChhhhHhhccccc------cccCceeEEecCCCCcCCC-----
Q 037574 707 FIVSGGNDDKK-ASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKR------EKLLALGISFDRDDEEGRK----- 774 (961)
Q Consensus 707 ~~~~~~~~~~~-~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~------~~L~~L~l~~~~~~~~~~~----- 774 (961)
+.+.+... ...+..+.. .+|+ .+.+....-. ......+..+ ..|+.|+++.+........
T Consensus 156 ---s~N~i~~~~~~~l~~l~~-~~L~-~L~L~~n~l~---~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 227 (844)
T 3j0a_A 156 ---SSNQIFLVCEHELEPLQG-KTLS-FFSLAANSLY---SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA 227 (844)
T ss_dssp ---ESSCCCCCCSGGGHHHHH-CSSC-CCEECCSBSC---CCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGT
T ss_pred ---CCCcCCeeCHHHcccccC-Cccc-eEECCCCccc---cccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhh
Confidence 33332211 223333311 3333 3333321111 1111112222 2488888887743210000
Q ss_pred -------------------------ccchHHHHhcCCCCCCcCceEEeeecCccccccccccccCceEEEEeCCCCCCcC
Q 037574 775 -------------------------KEDDEAVVEGLELPSNLESMEMFYYRGESISLMMIMLSNKLRSLTLDRCVNLKQL 829 (961)
Q Consensus 775 -------------------------~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l 829 (961)
.......+.++ .+++|+.|+++++............+++|+.|+|++|......
T Consensus 228 l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 306 (844)
T 3j0a_A 228 ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL-ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA 306 (844)
T ss_dssp SCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTT-TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC
T ss_pred cCcccccceecccccccccccccccCCCChhhhhcc-ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCC
Confidence 00000111111 1367889999888766552222236889999999988433333
Q ss_pred C-CCCCCCccceeeeccccCceEeCccccccCCCCCCCcccccCcccceeeccccccccccccccccCccccccccccee
Q 037574 830 P-GLGGLPSLESLTLRNMKRIEKVGNEFLLTDRTSSTGTAVSAFPKLKSLVFLKMKAWREWKYKTKRGKHYKIMPCLCSL 908 (961)
Q Consensus 830 ~-~l~~lp~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L 908 (961)
| .+..+++|++|+|+++ .+..+.... ...+++|+.|.+.++ .+.... +.....+++|+.|
T Consensus 307 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~------------~~~l~~L~~L~L~~N-~i~~~~-----~~~~~~l~~L~~L 367 (844)
T 3j0a_A 307 DEAFYGLDNLQVLNLSYN-LLGELYSSN------------FYGLPKVAYIDLQKN-HIAIIQ-----DQTFKFLEKLQTL 367 (844)
T ss_dssp TTTTTTCSSCCEEEEESC-CCSCCCSCS------------CSSCTTCCEEECCSC-CCCCCC-----SSCSCSCCCCCEE
T ss_pred hHHhcCCCCCCEEECCCC-CCCccCHHH------------hcCCCCCCEEECCCC-CCCccC-----hhhhcCCCCCCEE
Confidence 3 5788899999999884 455443222 246788899988876 343332 2233467788888
Q ss_pred cccccccCcCCCCCCCCCCCCeEEEccc
Q 037574 909 TIGYCNELEMLPAEHFPDTLKDLKIISC 936 (961)
Q Consensus 909 ~i~~C~~L~~lp~~~l~~sL~~L~i~~c 936 (961)
++++| .++.++. ++. |+.|.+.++
T Consensus 368 ~Ls~N-~l~~i~~--~~~-L~~L~l~~N 391 (844)
T 3j0a_A 368 DLRDN-ALTTIHF--IPS-IPDIFLSGN 391 (844)
T ss_dssp EEETC-CSCCCSS--CCS-CSEEEEESC
T ss_pred ECCCC-CCCcccC--CCC-cchhccCCC
Confidence 88774 5555554 333 666666554
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.80 E-value=3.3e-19 Score=200.61 Aligned_cols=302 Identities=16% Similarity=0.159 Sum_probs=218.0
Q ss_pred CCCccEEEEEeccCCCCCc-ccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhccc-chhh
Q 037574 547 HEKFPHLMITFESDQGAFP-NSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKV-PKQI 624 (961)
Q Consensus 547 ~~~~r~l~l~~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~l-p~~i 624 (961)
..+++.+++..+.+. .+| ..+..+++|++|++.++. +. .+.+..|..+++|++|+|++| . +..+ |..+
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~--i~-~~~~~~~~~l~~L~~L~L~~n-----~-l~~~~~~~~ 113 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQ--IE-EIDTYAFAYAHTIQKLYMGFN-----A-IRYLPPHVF 113 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSC--CC-EECTTTTTTCTTCCEEECCSS-----C-CCCCCTTTT
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCc--cc-ccChhhccCCCCcCEEECCCC-----C-CCcCCHHHh
Confidence 468899999998874 344 346889999999999986 43 445567899999999999999 4 6666 5568
Q ss_pred cCCCCcceEeccCCCCcccCCcc-hhccCCCcEeecCCCCCCcccc-cccccCCCCcEEEeCCcccccCCcCCCCCCCCC
Q 037574 625 KRLIHLRYLNLSKNNKIKKLPKT-LCELYNLQTLELSWCSNLRNLP-QGMGKLINLRHVVNVGTPLSYMPKGIERWSCLR 702 (961)
Q Consensus 625 ~~l~~Lr~L~L~~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~l~~~p~~i~~L~~L~ 702 (961)
+++++|++|+|++|. ++.+|.. +.++++|++|++++|. +..++ ..+..+++|++|++++|.+..++ ++.+++|+
T Consensus 114 ~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~ 189 (390)
T 3o6n_A 114 QNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLF 189 (390)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCS
T ss_pred cCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCccc--cccccccc
Confidence 999999999999998 9999976 5899999999999988 66665 56899999999999999888764 44455555
Q ss_pred cCCceEecCCCCCCCCCChhhhhcccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHHHH
Q 037574 703 TLSEFIVSGGNDDKKASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAVV 782 (961)
Q Consensus 703 ~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l 782 (961)
.|. +..+. +..+.....|+ .+.+.+..-. .. . ....++|+.|+++.+.... .
T Consensus 190 ~L~---l~~n~-------l~~~~~~~~L~-~L~l~~n~l~---~~-~--~~~~~~L~~L~l~~n~l~~-----------~ 241 (390)
T 3o6n_A 190 HAN---VSYNL-------LSTLAIPIAVE-ELDASHNSIN---VV-R--GPVNVELTILKLQHNNLTD-----------T 241 (390)
T ss_dssp EEE---CCSSC-------CSEEECCSSCS-EEECCSSCCC---EE-E--CCCCSSCCEEECCSSCCCC-----------C
T ss_pred eee---ccccc-------ccccCCCCcce-EEECCCCeee---ec-c--ccccccccEEECCCCCCcc-----------c
Confidence 553 33332 22222222333 3333322111 11 1 1224689999999887642 1
Q ss_pred hcCCCCCCcCceEEeeecCccccccccccccCceEEEEeCCCCCCcCC-CCCCCCccceeeeccccCceEeCccccccCC
Q 037574 783 EGLELPSNLESMEMFYYRGESISLMMIMLSNKLRSLTLDRCVNLKQLP-GLGGLPSLESLTLRNMKRIEKVGNEFLLTDR 861 (961)
Q Consensus 783 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~l~~l~~~~~~~~~ 861 (961)
..+..+++|+.|+++++............+++|++|+|++| .+..+| ..+.+|+|+.|+++++ .+..++..
T Consensus 242 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~------ 313 (390)
T 3o6n_A 242 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERN------ 313 (390)
T ss_dssp GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGG------
T ss_pred HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecCcc------
Confidence 34455689999999999876652222336899999999998 455555 3567999999999995 56665543
Q ss_pred CCCCCcccccCcccceeeccccccccccccccccCcccccccccceecccccc
Q 037574 862 TSSTGTAVSAFPKLKSLVFLKMKAWREWKYKTKRGKHYKIMPCLCSLTIGYCN 914 (961)
Q Consensus 862 ~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~C~ 914 (961)
...+++|+.|.+.+++ +..+. ...+++|+.|++++++
T Consensus 314 -------~~~l~~L~~L~L~~N~-i~~~~--------~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 314 -------QPQFDRLENLYLDHNS-IVTLK--------LSTHHTLKNLTLSHND 350 (390)
T ss_dssp -------HHHHTTCSEEECCSSC-CCCCC--------CCTTCCCSEEECCSSC
T ss_pred -------ccccCcCCEEECCCCc-cceeC--------chhhccCCEEEcCCCC
Confidence 2468999999998874 33332 3478999999999964
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.80 E-value=1.2e-18 Score=200.47 Aligned_cols=341 Identities=15% Similarity=0.148 Sum_probs=224.0
Q ss_pred EEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhccc-chhhcCCCCc
Q 037574 552 HLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKV-PKQIKRLIHL 630 (961)
Q Consensus 552 ~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l~~L 630 (961)
.+....+.+ ..+|. -.++|++|+++++. +. ...+..|.++++|++|+|++| .....+ |..+.++++|
T Consensus 14 ~~~c~~~~l-~~lp~---l~~~l~~L~Ls~n~--i~-~~~~~~~~~l~~L~~L~L~~n-----~~~~~i~~~~~~~l~~L 81 (455)
T 3v47_A 14 NAICINRGL-HQVPE---LPAHVNYVDLSLNS--IA-ELNETSFSRLQDLQFLKVEQQ-----TPGLVIRNNTFRGLSSL 81 (455)
T ss_dssp EEECCSSCC-SSCCC---CCTTCCEEECCSSC--CC-EECTTTTSSCTTCCEEECCCC-----STTCEECTTTTTTCTTC
T ss_pred ccCcCCCCc-ccCCC---CCCccCEEEecCCc--cC-cCChhHhccCccccEEECcCC-----cccceECcccccccccC
Confidence 344444444 44554 23789999999987 43 445677999999999999999 323344 5679999999
Q ss_pred ceEeccCCCCcccC-CcchhccCCCcEeecCCCCCCc-ccccc--cccCCCCcEEEeCCcccccCC-cC-CCCCCCCCcC
Q 037574 631 RYLNLSKNNKIKKL-PKTLCELYNLQTLELSWCSNLR-NLPQG--MGKLINLRHVVNVGTPLSYMP-KG-IERWSCLRTL 704 (961)
Q Consensus 631 r~L~L~~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~-~lP~~--i~~L~~L~~L~l~~~~l~~~p-~~-i~~L~~L~~L 704 (961)
++|+|++|. +..+ |..++++++|++|++++|. +. ..|.. +..+++|++|++++|.+..++ .. ++.+++|+.|
T Consensus 82 ~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 159 (455)
T 3v47_A 82 IILKLDYNQ-FLQLETGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL 159 (455)
T ss_dssp CEEECTTCT-TCEECTTTTTTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEE
T ss_pred CEEeCCCCc-cCccChhhccCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEE
Confidence 999999999 6655 7889999999999999998 54 35554 889999999999999988774 33 6777777776
Q ss_pred CceEecCCCCCCC-CCChhhhhcccccCCceeEcCC-----CCCChhhhHhhccccccccCceeEEecCCCCcCCCccch
Q 037574 705 SEFIVSGGNDDKK-ASKLECLKSLNHLQGSLNIKGL-----GNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDD 778 (961)
Q Consensus 705 ~~~~~~~~~~~~~-~~~l~~L~~L~~L~~~L~i~~l-----~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 778 (961)
. +..+..... +..+..+.. ..|. .+.+.+. ............+..+++|+.|+++.+.... ..
T Consensus 160 ~---L~~n~l~~~~~~~l~~l~~-~~L~-~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~------~~ 228 (455)
T 3v47_A 160 D---LTFNKVKSICEEDLLNFQG-KHFT-LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE------SM 228 (455)
T ss_dssp E---CTTCCBSCCCTTTSGGGTT-CEEE-EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH------HH
T ss_pred e---CCCCcccccChhhhhcccc-cccc-ccccccCcccccchhhccccccccccccceeeeEecCCCcccc------cc
Confidence 5 344332211 222333211 1122 2222221 1111111222334566899999999886531 11
Q ss_pred HHHHhcCCCCCCcCceEEeeecCccc------------cccccccccCceEEEEeCCCCCCcCC-CCCCCCccceeeecc
Q 037574 779 EAVVEGLELPSNLESMEMFYYRGESI------------SLMMIMLSNKLRSLTLDRCVNLKQLP-GLGGLPSLESLTLRN 845 (961)
Q Consensus 779 ~~~l~~l~~~~~L~~L~l~~~~~~~~------------~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~ 845 (961)
...+.......+|+.|.++++..... ..+.....++|+.|+|++|......| .++.+++|+.|++++
T Consensus 229 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 308 (455)
T 3v47_A 229 AKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ 308 (455)
T ss_dssp HHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTT
T ss_pred hhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCC
Confidence 12222223347899999887643221 01111134689999999996544445 478999999999998
Q ss_pred ccCceEeCccccccCCCCCCCcccccCcccceeeccccccccccccccccCcccccccccceecccccccCcCCCCCCC-
Q 037574 846 MKRIEKVGNEFLLTDRTSSTGTAVSAFPKLKSLVFLKMKAWREWKYKTKRGKHYKIMPCLCSLTIGYCNELEMLPAEHF- 924 (961)
Q Consensus 846 ~~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~l- 924 (961)
+ .+..++...+ ..+++|+.|++.++ .+.... +.....+++|++|++++| ++..++...+
T Consensus 309 n-~l~~~~~~~~------------~~l~~L~~L~Ls~N-~l~~~~-----~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~ 368 (455)
T 3v47_A 309 N-EINKIDDNAF------------WGLTHLLKLNLSQN-FLGSID-----SRMFENLDKLEVLDLSYN-HIRALGDQSFL 368 (455)
T ss_dssp S-CCCEECTTTT------------TTCTTCCEEECCSS-CCCEEC-----GGGGTTCTTCCEEECCSS-CCCEECTTTTT
T ss_pred C-cccccChhHh------------cCcccCCEEECCCC-ccCCcC-----hhHhcCcccCCEEECCCC-cccccChhhcc
Confidence 4 5666654332 46789999999887 344332 234457899999999997 5665533222
Q ss_pred -CCCCCeEEEcccc
Q 037574 925 -PDTLKDLKIISCS 937 (961)
Q Consensus 925 -~~sL~~L~i~~c~ 937 (961)
.++|++|+++++.
T Consensus 369 ~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 369 GLPNLKELALDTNQ 382 (455)
T ss_dssp TCTTCCEEECCSSC
T ss_pred ccccccEEECCCCc
Confidence 2349999999874
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.80 E-value=1.9e-19 Score=208.49 Aligned_cols=270 Identities=21% Similarity=0.222 Sum_probs=176.4
Q ss_pred cEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhccc-chhhcCCCC
Q 037574 551 PHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKV-PKQIKRLIH 629 (961)
Q Consensus 551 r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l~~ 629 (961)
+.+....+.+ ..+|..+ .++++.|+++++. +. .+.+..|.++++|++|+|++| . +..+ |..++++++
T Consensus 14 ~~v~c~~~~l-~~ip~~~--~~~l~~L~L~~n~--l~-~~~~~~~~~l~~L~~L~L~~n-----~-i~~~~~~~~~~l~~ 81 (477)
T 2id5_A 14 RAVLCHRKRF-VAVPEGI--PTETRLLDLGKNR--IK-TLNQDEFASFPHLEELELNEN-----I-VSAVEPGAFNNLFN 81 (477)
T ss_dssp TEEECCSCCC-SSCCSCC--CTTCSEEECCSSC--CC-EECTTTTTTCTTCCEEECTTS-----C-CCEECTTTTTTCTT
T ss_pred CEEEeCCCCc-CcCCCCC--CCCCcEEECCCCc--cc-eECHhHccCCCCCCEEECCCC-----c-cCEeChhhhhCCcc
Confidence 4455555555 4456544 3689999999987 44 445667899999999999999 4 5555 788999999
Q ss_pred cceEeccCCCCcccCCc-chhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcccccCCc-CCCCCCCCCcCCce
Q 037574 630 LRYLNLSKNNKIKKLPK-TLCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLSYMPK-GIERWSCLRTLSEF 707 (961)
Q Consensus 630 Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~~~p~-~i~~L~~L~~L~~~ 707 (961)
|++|+|++|. +..+|. .+.++++|++|++++|......|..+..+++|++|++++|.+..++. .+..+++|+.|..
T Consensus 82 L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l- 159 (477)
T 2id5_A 82 LRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL- 159 (477)
T ss_dssp CCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEE-
T ss_pred CCEEECCCCc-CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEEC-
Confidence 9999999998 888885 47899999999999998333446678999999999999998887644 5777777777654
Q ss_pred EecCCCCCCCCCChhhhhcccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHHHHhcCCC
Q 037574 708 IVSGGNDDKKASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAVVEGLEL 787 (961)
Q Consensus 708 ~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~ 787 (961)
..+..... ....+..+.+|+ .|.+.+..- .......+..+++|+.|+++.+.... .+......
T Consensus 160 --~~n~l~~~--~~~~l~~l~~L~-~L~l~~n~i---~~~~~~~~~~l~~L~~L~l~~~~~~~---------~~~~~~~~ 222 (477)
T 2id5_A 160 --EKCNLTSI--PTEALSHLHGLI-VLRLRHLNI---NAIRDYSFKRLYRLKVLEISHWPYLD---------TMTPNCLY 222 (477)
T ss_dssp --ESCCCSSC--CHHHHTTCTTCC-EEEEESCCC---CEECTTCSCSCTTCCEEEEECCTTCC---------EECTTTTT
T ss_pred --CCCcCccc--ChhHhcccCCCc-EEeCCCCcC---cEeChhhcccCcccceeeCCCCcccc---------ccCccccc
Confidence 44332221 112244445554 555544221 12222356677888888888765431 11111222
Q ss_pred CCCcCceEEeeecCccccccccccccCceEEEEeCCCCCCcCC--CCCCCCccceeeeccccCceEeC
Q 037574 788 PSNLESMEMFYYRGESISLMMIMLSNKLRSLTLDRCVNLKQLP--GLGGLPSLESLTLRNMKRIEKVG 853 (961)
Q Consensus 788 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~--~l~~lp~L~~L~L~~~~~l~~l~ 853 (961)
..+|++|+++++....++......+++|+.|+|++|. +..++ .+..+++|+.|+|+++ .+..++
T Consensus 223 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~ 288 (477)
T 2id5_A 223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGG-QLAVVE 288 (477)
T ss_dssp TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSS-CCSEEC
T ss_pred CccccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCC-ccceEC
Confidence 3367777777766555432222356677777777763 33333 3566677777777663 355443
No 35
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.80 E-value=6.8e-19 Score=207.95 Aligned_cols=325 Identities=18% Similarity=0.159 Sum_probs=176.2
Q ss_pred CCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhc--ccchhh
Q 037574 547 HEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIK--KVPKQI 624 (961)
Q Consensus 547 ~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~--~lp~~i 624 (961)
.+++++|.+++|.+....|..+..+++|++|++++|. +. ...+..|.++++|++|+|++|. +. ..|..+
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--l~-~~~~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~ 119 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH--LS-SLSSSWFGPLSSLKYLNLMGNP------YQTLGVTSLF 119 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC--CC-SCCHHHHTTCTTCCEEECTTCC------CSSSCSSCSC
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCc--cC-ccCHHHhccCCCCcEEECCCCc------ccccchhhhh
Confidence 4567777777777654445567777777777777765 33 3345556777777777777773 44 234556
Q ss_pred cCCCCcceEeccCCCCcccCC-cchhccCCCcEeecCCCCCCccccccccc------------------------CCCCc
Q 037574 625 KRLIHLRYLNLSKNNKIKKLP-KTLCELYNLQTLELSWCSNLRNLPQGMGK------------------------LINLR 679 (961)
Q Consensus 625 ~~l~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lP~~i~~------------------------L~~L~ 679 (961)
+++++|++|++++|..+..+| ..+.++++|++|++++|......|..+.. +++|+
T Consensus 120 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 199 (549)
T 2z81_A 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVR 199 (549)
T ss_dssp TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBS
T ss_pred hccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhccccc
Confidence 677777777777665455555 35666666777766666522234444443 55666
Q ss_pred EEEeCCcccccCC---cCC-CCCCCCCcCC-------------------------ceEecCCCCCCC----------CCC
Q 037574 680 HVVNVGTPLSYMP---KGI-ERWSCLRTLS-------------------------EFIVSGGNDDKK----------ASK 720 (961)
Q Consensus 680 ~L~l~~~~l~~~p---~~i-~~L~~L~~L~-------------------------~~~~~~~~~~~~----------~~~ 720 (961)
+|++++|++..++ ..+ ..+++|+.|. ...+..+..... ...
T Consensus 200 ~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~ 279 (549)
T 2z81_A 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSE 279 (549)
T ss_dssp EEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCC
T ss_pred EEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhh
Confidence 6666555554431 111 1112222111 111111000000 000
Q ss_pred hhh----------------------------------------------h-hcccccCCceeEcCCCCCChhhhH---hh
Q 037574 721 LEC----------------------------------------------L-KSLNHLQGSLNIKGLGNVDKDEIF---KA 750 (961)
Q Consensus 721 l~~----------------------------------------------L-~~L~~L~~~L~i~~l~~~~~~~~~---~~ 750 (961)
+.. + ..++.|+ .|. +......+.. ..
T Consensus 280 l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~-~L~---Ls~N~l~~~~~~~~~ 355 (549)
T 2z81_A 280 LGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLE-FLD---LSENLMVEEYLKNSA 355 (549)
T ss_dssp CTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCC-EEE---CCSSCCCHHHHHHHT
T ss_pred hcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCcccc-EEE---ccCCccccccccchh
Confidence 000 0 1222222 222 2222222222 23
Q ss_pred ccccccccCceeEEecCCCCcCCCccchHHHHhcCCCCCCcCceEEeeecCccc-cccccccccCceEEEEeCCCCCCcC
Q 037574 751 ELSKREKLLALGISFDRDDEEGRKKEDDEAVVEGLELPSNLESMEMFYYRGESI-SLMMIMLSNKLRSLTLDRCVNLKQL 829 (961)
Q Consensus 751 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~l 829 (961)
.+..+++|+.|+++.|.... .......+..+++|+.|+++++....+ .++. .+++|++|+|++|. +..+
T Consensus 356 ~~~~l~~L~~L~Ls~N~l~~-------~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~--~~~~L~~L~Ls~N~-l~~l 425 (549)
T 2z81_A 356 CKGAWPSLQTLVLSQNHLRS-------MQKTGEILLTLKNLTSLDISRNTFHPMPDSCQ--WPEKMRFLNLSSTG-IRVV 425 (549)
T ss_dssp CTTSSTTCCEEECTTSCCCC-------HHHHHHHGGGCTTCCEEECTTCCCCCCCSCCC--CCTTCCEEECTTSC-CSCC
T ss_pred hhhccccCcEEEccCCcccc-------cccchhhhhcCCCCCEEECCCCCCccCChhhc--ccccccEEECCCCC-cccc
Confidence 46678899999999886542 111112344457888888888876655 3332 45677777777763 3333
Q ss_pred CC-------------------CCCCCccceeeeccccCceEeCccccccCCCCCCCcccccCcccceeeccccccccccc
Q 037574 830 PG-------------------LGGLPSLESLTLRNMKRIEKVGNEFLLTDRTSSTGTAVSAFPKLKSLVFLKMKAWREWK 890 (961)
Q Consensus 830 ~~-------------------l~~lp~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~ 890 (961)
|. .+.+++|+.|+|+++ .++.+|. ...+++|+.|++.++ ++....
T Consensus 426 ~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~--------------~~~l~~L~~L~Ls~N-~l~~~~ 489 (549)
T 2z81_A 426 KTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPD--------------ASLFPVLLVMKISRN-QLKSVP 489 (549)
T ss_dssp CTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC--------------GGGCTTCCEEECCSS-CCCCCC
T ss_pred cchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCC--------------cccCccCCEEecCCC-ccCCcC
Confidence 31 124555566666553 3443332 135789999999886 455433
Q ss_pred cccccCcccccccccceeccccccc
Q 037574 891 YKTKRGKHYKIMPCLCSLTIGYCNE 915 (961)
Q Consensus 891 ~~~~~~~~~~~~p~L~~L~i~~C~~ 915 (961)
+.....+++|+.|++++|+-
T Consensus 490 -----~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 490 -----DGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp -----TTGGGGCTTCCEEECCSSCB
T ss_pred -----HHHHhcCcccCEEEecCCCc
Confidence 23356889999999999863
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.80 E-value=7.2e-19 Score=200.94 Aligned_cols=252 Identities=17% Similarity=0.173 Sum_probs=138.4
Q ss_pred CCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcC
Q 037574 547 HEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKR 626 (961)
Q Consensus 547 ~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~ 626 (961)
.+.+++++++.+.+.. +| .+..+++|++|++++|. +. . ++ +..+++|++|++++|. +..+| +++
T Consensus 41 l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~--l~-~-~~--~~~l~~L~~L~Ls~N~------l~~~~--~~~ 104 (457)
T 3bz5_A 41 LATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNN--IT-T-LD--LSQNTNLTYLACDSNK------LTNLD--VTP 104 (457)
T ss_dssp HTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSC--CS-C-CC--CTTCTTCSEEECCSSC------CSCCC--CTT
T ss_pred cCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCc--CC-e-Ec--cccCCCCCEEECcCCC------Cceee--cCC
Confidence 4567777777776643 34 56777777777777765 32 1 12 6677777777777773 55554 677
Q ss_pred CCCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcc-cccCCcCCCCCCCCCcCC
Q 037574 627 LIHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTP-LSYMPKGIERWSCLRTLS 705 (961)
Q Consensus 627 l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~-l~~~p~~i~~L~~L~~L~ 705 (961)
+++|++|++++|. +..+| ++.+++|++|++++|. +..+| ++.+++|++|+++.|. +..+ .++.+++|+.|.
T Consensus 105 l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ 176 (457)
T 3bz5_A 105 LTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLD 176 (457)
T ss_dssp CTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEE
T ss_pred CCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEE
Confidence 7777777777776 66665 6777777777777766 66554 6677777777776663 3333 344455555443
Q ss_pred ceEecCCCCCCCCCChhhhhcccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHHHHhcC
Q 037574 706 EFIVSGGNDDKKASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAVVEGL 785 (961)
Q Consensus 706 ~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l 785 (961)
+..+.....+ +..+++|+ .+.+.+ ...... .+..+++|+.|+++.+.... +. +
T Consensus 177 ---ls~n~l~~l~--l~~l~~L~----~L~l~~---N~l~~~---~l~~l~~L~~L~Ls~N~l~~-----------ip-~ 229 (457)
T 3bz5_A 177 ---CSFNKITELD--VSQNKLLN----RLNCDT---NNITKL---DLNQNIQLTFLDCSSNKLTE-----------ID-V 229 (457)
T ss_dssp ---CCSSCCCCCC--CTTCTTCC----EEECCS---SCCSCC---CCTTCTTCSEEECCSSCCSC-----------CC-C
T ss_pred ---CCCCccceec--cccCCCCC----EEECcC---CcCCee---ccccCCCCCEEECcCCcccc-----------cC-c
Confidence 3333322211 22222222 222221 111110 24556666677766665431 01 3
Q ss_pred CCCCCcCceEEeeecCccccccccccccCceE----------EEEeCCCCCCcCCCCCCCCccceeeeccccCceEeC
Q 037574 786 ELPSNLESMEMFYYRGESISLMMIMLSNKLRS----------LTLDRCVNLKQLPGLGGLPSLESLTLRNMKRIEKVG 853 (961)
Q Consensus 786 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~----------L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~l~~l~ 853 (961)
..+++|+.|+++++.....+ ...+++|+. |++++|.....+| .+.+++|+.|++++|..+..++
T Consensus 230 ~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 230 TPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp TTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEE
T ss_pred cccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceec
Confidence 44566666666666554432 112333333 3333333333333 3455666666666665555554
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=3.7e-19 Score=211.59 Aligned_cols=303 Identities=15% Similarity=0.142 Sum_probs=214.2
Q ss_pred CCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccc-hhhc
Q 037574 547 HEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVP-KQIK 625 (961)
Q Consensus 547 ~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp-~~i~ 625 (961)
..+++.+.+.++.+....+..+..+++|++|++.++. +. .+.+..|..+++|++|+|++| . +..+| ..++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~--l~-~~~~~~~~~l~~L~~L~L~~n-----~-l~~~~~~~~~ 120 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ--IE-EIDTYAFAYAHTIQKLYMGFN-----A-IRYLPPHVFQ 120 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC--CC-EECTTTTTTCTTCCEEECCSS-----C-CCCCCTTTTT
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC--CC-CCChHHhcCCCCCCEEECCCC-----c-CCCCCHHHHc
Confidence 3678899998887743333457789999999999987 43 445567899999999999999 4 66665 4579
Q ss_pred CCCCcceEeccCCCCcccCCcc-hhccCCCcEeecCCCCCCcccc-cccccCCCCcEEEeCCcccccCCcCCCCCCCCCc
Q 037574 626 RLIHLRYLNLSKNNKIKKLPKT-LCELYNLQTLELSWCSNLRNLP-QGMGKLINLRHVVNVGTPLSYMPKGIERWSCLRT 703 (961)
Q Consensus 626 ~l~~Lr~L~L~~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~l~~~p~~i~~L~~L~~ 703 (961)
.+++|++|+|++|. +..+|.. ++++++|++|++++|. +..+| ..+..+++|++|++++|.+..++ ++.+++|+.
T Consensus 121 ~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~ 196 (597)
T 3oja_B 121 NVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFH 196 (597)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSE
T ss_pred CCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhh
Confidence 99999999999998 8898876 5899999999999998 66665 56899999999999999888765 444556655
Q ss_pred CCceEecCCCCCCCCCChhhhhcccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHHHHh
Q 037574 704 LSEFIVSGGNDDKKASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAVVE 783 (961)
Q Consensus 704 L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 783 (961)
|. +..+. +..+.....|. .+.+.+..-. . +.. ...++|+.|+++.+.... ..
T Consensus 197 L~---l~~n~-------l~~l~~~~~L~-~L~ls~n~l~---~-~~~--~~~~~L~~L~L~~n~l~~-----------~~ 248 (597)
T 3oja_B 197 AN---VSYNL-------LSTLAIPIAVE-ELDASHNSIN---V-VRG--PVNVELTILKLQHNNLTD-----------TA 248 (597)
T ss_dssp EE---CCSSC-------CSEEECCTTCS-EEECCSSCCC---E-EEC--SCCSCCCEEECCSSCCCC-----------CG
T ss_pred hh---cccCc-------cccccCCchhh-eeeccCCccc---c-ccc--ccCCCCCEEECCCCCCCC-----------Ch
Confidence 53 33333 22222222333 3333222111 0 001 123579999999886542 13
Q ss_pred cCCCCCCcCceEEeeecCccccccccccccCceEEEEeCCCCCCcCC-CCCCCCccceeeeccccCceEeCccccccCCC
Q 037574 784 GLELPSNLESMEMFYYRGESISLMMIMLSNKLRSLTLDRCVNLKQLP-GLGGLPSLESLTLRNMKRIEKVGNEFLLTDRT 862 (961)
Q Consensus 784 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~l~~l~~~~~~~~~~ 862 (961)
.+..+++|+.|+++++............+++|+.|+|++| .+..+| ..+.+|+|+.|+|++| .+..+|..
T Consensus 249 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~------- 319 (597)
T 3oja_B 249 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERN------- 319 (597)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGG-------
T ss_pred hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCC-CCCccCcc-------
Confidence 4455689999999998876652222337889999999998 455555 3566899999999985 46655543
Q ss_pred CCCCcccccCcccceeeccccccccccccccccCcccccccccceecccccc
Q 037574 863 SSTGTAVSAFPKLKSLVFLKMKAWREWKYKTKRGKHYKIMPCLCSLTIGYCN 914 (961)
Q Consensus 863 ~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~C~ 914 (961)
...+++|+.|.+.+++ +... ....+++|+.|+|++|+
T Consensus 320 ------~~~l~~L~~L~L~~N~-l~~~--------~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 320 ------QPQFDRLENLYLDHNS-IVTL--------KLSTHHTLKNLTLSHND 356 (597)
T ss_dssp ------HHHHTTCSEEECCSSC-CCCC--------CCCTTCCCSEEECCSSC
T ss_pred ------cccCCCCCEEECCCCC-CCCc--------ChhhcCCCCEEEeeCCC
Confidence 2467889999988864 3322 23478899999998865
No 38
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.78 E-value=1.7e-18 Score=208.51 Aligned_cols=136 Identities=18% Similarity=0.259 Sum_probs=115.7
Q ss_pred CcCCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccch-h
Q 037574 545 SSHEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPK-Q 623 (961)
Q Consensus 545 ~~~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~-~ 623 (961)
..+..+++|++++|.++...+..|.++++|++|++++|. +. .+.+..|.++++|++|+|++| . +..+|. .
T Consensus 49 ~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~--i~-~i~~~~f~~L~~L~~L~Ls~N-----~-l~~l~~~~ 119 (635)
T 4g8a_A 49 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE--IQ-TIEDGAYQSLSHLSTLILTGN-----P-IQSLALGA 119 (635)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC--CC-EECTTTTTTCTTCCEEECTTC-----C-CCEECGGG
T ss_pred CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc--CC-CcChhHhcCCCCCCEEEccCC-----c-CCCCCHHH
Confidence 456789999999999965555689999999999999987 44 456678999999999999999 4 788875 5
Q ss_pred hcCCCCcceEeccCCCCcccCCc-chhccCCCcEeecCCCCCCcc--cccccccCCCCcEEEeCCcccccC
Q 037574 624 IKRLIHLRYLNLSKNNKIKKLPK-TLCELYNLQTLELSWCSNLRN--LPQGMGKLINLRHVVNVGTPLSYM 691 (961)
Q Consensus 624 i~~l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~--lP~~i~~L~~L~~L~l~~~~l~~~ 691 (961)
|+++.+|++|+|++|. ++.+|. .+++|++|++|++++|. +.. +|..+..+++|++|+++.|++..+
T Consensus 120 f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp GTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred hcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCcccccc
Confidence 8999999999999998 888875 58999999999999987 543 577889999999999988877644
No 39
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.78 E-value=2.4e-18 Score=208.77 Aligned_cols=273 Identities=17% Similarity=0.137 Sum_probs=168.5
Q ss_pred EEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhccc-chhhcCCCCc
Q 037574 552 HLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKV-PKQIKRLIHL 630 (961)
Q Consensus 552 ~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l~~L 630 (961)
.++.+++.+ ..+|..+. +++++|+++++. +. .+.+..|.++++|++|+|++| . +..+ |..++++++|
T Consensus 8 ~~~cs~~~L-~~ip~~~~--~~l~~L~Ls~n~--l~-~~~~~~~~~l~~L~~L~Ls~n-----~-l~~~~~~~~~~l~~L 75 (680)
T 1ziw_A 8 VADCSHLKL-TQVPDDLP--TNITVLNLTHNQ--LR-RLPAANFTRYSQLTSLDVGFN-----T-ISKLEPELCQKLPML 75 (680)
T ss_dssp EEECCSSCC-SSCCSCSC--TTCSEEECCSSC--CC-CCCGGGGGGGTTCSEEECCSS-----C-CCCCCTTHHHHCTTC
T ss_pred eeECCCCCc-cccccccC--CCCcEEECCCCC--CC-CcCHHHHhCCCcCcEEECCCC-----c-cCccCHHHHhcccCc
Confidence 455555555 44565443 799999999987 43 445667999999999999998 4 5544 7789999999
Q ss_pred ceEeccCCCCcccCCc-chhccCCCcEeecCCCCCCcccc-cccccCCCCcEEEeCCcccccCCc-CCCCCCCCCcCCce
Q 037574 631 RYLNLSKNNKIKKLPK-TLCELYNLQTLELSWCSNLRNLP-QGMGKLINLRHVVNVGTPLSYMPK-GIERWSCLRTLSEF 707 (961)
Q Consensus 631 r~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~l~~~p~-~i~~L~~L~~L~~~ 707 (961)
++|+|++|. +..+|. .++++++|++|++++|. +..+| ..++++++|++|+++.|.+...+. .++++++|+.|..
T Consensus 76 ~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L- 152 (680)
T 1ziw_A 76 KVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLL- 152 (680)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEEC-
T ss_pred CEEECCCCc-cCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEc-
Confidence 999999998 888886 69999999999999987 67776 579999999999999998876644 4677777777653
Q ss_pred EecCCCCCCCCCChhhhhcccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHHHHhcCCC
Q 037574 708 IVSGGNDDKKASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAVVEGLEL 787 (961)
Q Consensus 708 ~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~ 787 (961)
..+.........-....+..|+ .+.+.+ ..........+..+.+|+.|.+..+.... .........+ .
T Consensus 153 --~~n~l~~~~~~~~~~~~~~~L~-~L~L~~---n~l~~~~~~~~~~l~~L~~L~l~~~~l~~-----~~~~~~~~~l-~ 220 (680)
T 1ziw_A 153 --SNNKIQALKSEELDIFANSSLK-KLELSS---NQIKEFSPGCFHAIGRLFGLFLNNVQLGP-----SLTEKLCLEL-A 220 (680)
T ss_dssp --CSSCCCCBCHHHHGGGTTCEES-EEECTT---CCCCCBCTTGGGGSSEECEEECTTCCCHH-----HHHHHHHHHH-T
T ss_pred --cCCcccccCHHHhhcccccccc-EEECCC---CcccccChhhhhhhhhhhhhhccccccCh-----hhHHHHHHHh-h
Confidence 3333221111100011123333 333322 21122223345556677777766543210 0001111111 2
Q ss_pred CCCcCceEEeeecCccc--cccccccccCceEEEEeCCCCCCcCC-CCCCCCccceeeeccccCceEe
Q 037574 788 PSNLESMEMFYYRGESI--SLMMIMLSNKLRSLTLDRCVNLKQLP-GLGGLPSLESLTLRNMKRIEKV 852 (961)
Q Consensus 788 ~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~l~~l 852 (961)
.++|+.|+++++..... .++.....++|+.|+|++|......| .++.+++|+.|+++++ .+..+
T Consensus 221 ~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~ 287 (680)
T 1ziw_A 221 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN-NIQHL 287 (680)
T ss_dssp TSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSC-CBSEE
T ss_pred hccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCC-ccCcc
Confidence 35677777776655444 23331122347777777763222222 3666777777777663 34443
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.78 E-value=2.4e-18 Score=196.67 Aligned_cols=309 Identities=17% Similarity=0.144 Sum_probs=146.7
Q ss_pred cccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcccCCc
Q 037574 567 SVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKKLPK 646 (961)
Q Consensus 567 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~ 646 (961)
.+..+++|++|+++++. +. . .+ .+..+++|++|+|++|. +..+| ++.+++|++|++++|. ++.+|
T Consensus 37 ~~~~l~~L~~L~Ls~n~--l~-~-~~-~l~~l~~L~~L~Ls~n~------l~~~~--~~~l~~L~~L~Ls~N~-l~~~~- 101 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSS--IT-D-MT-GIEKLTGLTKLICTSNN------ITTLD--LSQNTNLTYLACDSNK-LTNLD- 101 (457)
T ss_dssp EHHHHTTCCEEECCSSC--CC-C-CT-TGGGCTTCSEEECCSSC------CSCCC--CTTCTTCSEEECCSSC-CSCCC-
T ss_pred ChhHcCCCCEEEccCCC--cc-c-Ch-hhcccCCCCEEEccCCc------CCeEc--cccCCCCCEEECcCCC-Cceee-
Confidence 44556666666666654 22 1 22 35666666666666662 44454 5666666666666666 55554
Q ss_pred chhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcccccCCcCCCCCCCCCcCCceEecCCCCCCCCCChhhhhc
Q 037574 647 TLCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLSYMPKGIERWSCLRTLSEFIVSGGNDDKKASKLECLKS 726 (961)
Q Consensus 647 ~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~ 726 (961)
++++++|++|++++|. +..+| ++.+++|++|+++.|.+..++ ++.+++|+.|.. ..+.... ...+..
T Consensus 102 -~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l---~~n~~~~-~~~~~~--- 168 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDC---HLNKKIT-KLDVTP--- 168 (457)
T ss_dssp -CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEEC---TTCSCCC-CCCCTT---
T ss_pred -cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEEC---CCCCccc-cccccc---
Confidence 6666666666666665 55554 566666666666666665543 444444444432 2221000 001222
Q ss_pred ccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHHHHhcCCCCCCcCceEEeeecCccccc
Q 037574 727 LNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAVVEGLELPSNLESMEMFYYRGESISL 806 (961)
Q Consensus 727 L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~ 806 (961)
+..|+ .+.+.+.. ... . .+..+++|+.|+++.+..... .+..+++|+.|+++++....++
T Consensus 169 l~~L~-~L~ls~n~---l~~-l--~l~~l~~L~~L~l~~N~l~~~------------~l~~l~~L~~L~Ls~N~l~~ip- 228 (457)
T 3bz5_A 169 QTQLT-TLDCSFNK---ITE-L--DVSQNKLLNRLNCDTNNITKL------------DLNQNIQLTFLDCSSNKLTEID- 228 (457)
T ss_dssp CTTCC-EEECCSSC---CCC-C--CCTTCTTCCEEECCSSCCSCC------------CCTTCTTCSEEECCSSCCSCCC-
T ss_pred CCcCC-EEECCCCc---cce-e--ccccCCCCCEEECcCCcCCee------------ccccCCCCCEEECcCCcccccC-
Confidence 22222 22222111 111 0 144556666666666544310 1334456666666666554443
Q ss_pred cccccccCceEEEEeCCCCCCcCCCCCCCCccceeeeccccCceEeCccccccCCCCC-CCcccccCcccceeecccccc
Q 037574 807 MMIMLSNKLRSLTLDRCVNLKQLPGLGGLPSLESLTLRNMKRIEKVGNEFLLTDRTSS-TGTAVSAFPKLKSLVFLKMKA 885 (961)
Q Consensus 807 ~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~l~~l~~~~~~~~~~~~-~~~~~~~fp~L~~L~l~~~~~ 885 (961)
...+++|+.|+|++| .+..+| .+.+++|+.|++++ +.++.+.... +.. .......+++|+.|++.+++.
T Consensus 229 --~~~l~~L~~L~l~~N-~l~~~~-~~~l~~L~~L~l~~-n~L~~L~l~~-----n~~~~~~~~~~l~~L~~L~Ls~n~~ 298 (457)
T 3bz5_A 229 --VTPLTQLTYFDCSVN-PLTELD-VSTLSKLTTLHCIQ-TDLLEIDLTH-----NTQLIYFQAEGCRKIKELDVTHNTQ 298 (457)
T ss_dssp --CTTCTTCSEEECCSS-CCSCCC-CTTCTTCCEEECTT-CCCSCCCCTT-----CTTCCEEECTTCTTCCCCCCTTCTT
T ss_pred --ccccCCCCEEEeeCC-cCCCcC-HHHCCCCCEEeccC-CCCCEEECCC-----CccCCcccccccccCCEEECCCCcc
Confidence 224566666666666 333333 34455555554443 2233322110 000 000123455666666666554
Q ss_pred cccccccccc--CcccccccccceecccccccCcCCCCCCCCCCCCeEEEcc
Q 037574 886 WREWKYKTKR--GKHYKIMPCLCSLTIGYCNELEMLPAEHFPDTLKDLKIIS 935 (961)
Q Consensus 886 l~~~~~~~~~--~~~~~~~p~L~~L~i~~C~~L~~lp~~~l~~sL~~L~i~~ 935 (961)
+..+...... .-....+|+|+.|.+++ ++++.+|...++. |+.|++++
T Consensus 299 l~~l~~~~~~L~~L~l~~~~~L~~L~L~~-N~l~~l~l~~l~~-L~~L~l~~ 348 (457)
T 3bz5_A 299 LYLLDCQAAGITELDLSQNPKLVYLYLNN-TELTELDVSHNTK-LKSLSCVN 348 (457)
T ss_dssp CCEEECTTCCCSCCCCTTCTTCCEEECTT-CCCSCCCCTTCTT-CSEEECCS
T ss_pred cceeccCCCcceEechhhcccCCEEECCC-CcccccccccCCc-CcEEECCC
Confidence 4433220000 00122344555555544 2444444433343 66665544
No 41
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.78 E-value=3.4e-18 Score=202.18 Aligned_cols=128 Identities=21% Similarity=0.190 Sum_probs=92.3
Q ss_pred cCCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhc
Q 037574 546 SHEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIK 625 (961)
Q Consensus 546 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~ 625 (961)
.++++++|++++|.+....+..+..+++|++|++++|. +. .+.+..|.++++|++|+|++|. +..+|..
T Consensus 50 ~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~--l~-~~~~~~~~~l~~L~~L~Ls~N~------l~~lp~~-- 118 (562)
T 3a79_B 50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR--IR-SLDFHVFLFNQDLEYLDVSHNR------LQNISCC-- 118 (562)
T ss_dssp SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC--CC-EECTTTTTTCTTCCEEECTTSC------CCEECSC--
T ss_pred CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCC--CC-cCCHHHhCCCCCCCEEECCCCc------CCccCcc--
Confidence 34678888888888765555678888888888888876 33 3446667888888888888883 6777776
Q ss_pred CCCCcceEeccCCCCcccCC--cchhccCCCcEeecCCCCCCcccccccccCCCC--cEEEeCCccc
Q 037574 626 RLIHLRYLNLSKNNKIKKLP--KTLCELYNLQTLELSWCSNLRNLPQGMGKLINL--RHVVNVGTPL 688 (961)
Q Consensus 626 ~l~~Lr~L~L~~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L--~~L~l~~~~l 688 (961)
.+++|++|+|++|. +..+| ..++++++|++|++++|. +.. ..+..+++| ++|+++.|.+
T Consensus 119 ~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 119 PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEEESSC
T ss_pred ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEEeecccc
Confidence 78888888888887 66654 678888888888888876 443 234444555 7777766655
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.77 E-value=6.1e-18 Score=185.68 Aligned_cols=292 Identities=21% Similarity=0.258 Sum_probs=187.0
Q ss_pred CccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhccc-chhhcCC
Q 037574 549 KFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKV-PKQIKRL 627 (961)
Q Consensus 549 ~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l 627 (961)
.++.+.+..+.+ ..+|..+ .++|+.|+++++. +. .+.+..|.++++|++|+|++| . +..+ |..++.+
T Consensus 34 ~l~~l~~~~~~l-~~ip~~~--~~~l~~L~l~~n~--i~-~~~~~~~~~l~~L~~L~L~~n-----~-l~~~~~~~~~~l 101 (332)
T 2ft3_A 34 HLRVVQCSDLGL-KAVPKEI--SPDTTLLDLQNND--IS-ELRKDDFKGLQHLYALVLVNN-----K-ISKIHEKAFSPL 101 (332)
T ss_dssp ETTEEECCSSCC-SSCCSCC--CTTCCEEECCSSC--CC-EECTTTTTTCTTCCEEECCSS-----C-CCEECGGGSTTC
T ss_pred cCCEEECCCCCc-cccCCCC--CCCCeEEECCCCc--CC-ccCHhHhhCCCCCcEEECCCC-----c-cCccCHhHhhCc
Confidence 467777777766 3455444 3688888888876 33 334556788888888888888 3 5555 6778888
Q ss_pred CCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccccc-cccCCCCcEEEeCCccccc---CCcCCCCCCCCCc
Q 037574 628 IHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQG-MGKLINLRHVVNVGTPLSY---MPKGIERWSCLRT 703 (961)
Q Consensus 628 ~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~l~~---~p~~i~~L~~L~~ 703 (961)
++|++|+|++|. +..+|..+. ++|++|++++|. +..+|.. +..+++|++|++++|.+.. .|..+..+ +|+.
T Consensus 102 ~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~ 176 (332)
T 2ft3_A 102 RKLQKLYISKNH-LVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNY 176 (332)
T ss_dssp TTCCEEECCSSC-CCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSC
T ss_pred CCCCEEECCCCc-CCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCE
Confidence 888888888888 888887665 788888888877 6677654 7788888888888877753 23334444 4444
Q ss_pred CCceEecCCCCCCCCCChhhhhcccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHHHHh
Q 037574 704 LSEFIVSGGNDDKKASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAVVE 783 (961)
Q Consensus 704 L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 783 (961)
|. +..+.....+ ..+ .++|+.|+++++.... ....
T Consensus 177 L~---l~~n~l~~l~-------------------------------~~~--~~~L~~L~l~~n~i~~---------~~~~ 211 (332)
T 2ft3_A 177 LR---ISEAKLTGIP-------------------------------KDL--PETLNELHLDHNKIQA---------IELE 211 (332)
T ss_dssp CB---CCSSBCSSCC-------------------------------SSS--CSSCSCCBCCSSCCCC---------CCTT
T ss_pred EE---CcCCCCCccC-------------------------------ccc--cCCCCEEECCCCcCCc---------cCHH
Confidence 43 2222110000 001 1467777777765431 1123
Q ss_pred cCCCCCCcCceEEeeecCccccccccccccCceEEEEeCCCCCCcCC-CCCCCCccceeeeccccCceEeCccccccCCC
Q 037574 784 GLELPSNLESMEMFYYRGESISLMMIMLSNKLRSLTLDRCVNLKQLP-GLGGLPSLESLTLRNMKRIEKVGNEFLLTDRT 862 (961)
Q Consensus 784 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~l~~l~~~~~~~~~~ 862 (961)
.+..+++|+.|+++++....+.......+++|+.|+|++| .+..+| .++.+++|+.|++++ +.++.++...+....
T Consensus 212 ~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~- 288 (332)
T 2ft3_A 212 DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHT-NNITKVGVNDFCPVG- 288 (332)
T ss_dssp SSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCS-SCCCBCCTTSSSCSS-
T ss_pred HhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCC-CCCCccChhHccccc-
Confidence 4455678888888888766652222237889999999998 455777 478899999999998 567777765443210
Q ss_pred CCCCcccccCcccceeeccccccccccccccccCcccccccccceecccccc
Q 037574 863 SSTGTAVSAFPKLKSLVFLKMKAWREWKYKTKRGKHYKIMPCLCSLTIGYCN 914 (961)
Q Consensus 863 ~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~C~ 914 (961)
....+++|+.|.+.+++ +..+.. .+.....+++|+.|.+++|.
T Consensus 289 -----~~~~~~~l~~L~l~~N~-~~~~~~---~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 289 -----FGVKRAYYNGISLFNNP-VPYWEV---QPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp -----CCSSSCCBSEEECCSSS-SCGGGS---CGGGGTTBCCSTTEEC----
T ss_pred -----cccccccccceEeecCc-cccccc---Ccccccccchhhhhhccccc
Confidence 01236778888888775 332222 02234456777777777654
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.76 E-value=1.9e-18 Score=187.67 Aligned_cols=244 Identities=16% Similarity=0.157 Sum_probs=163.6
Q ss_pred CCccEEEEEeccCCC--CCcccccCCCCccEEEecc-CCCccccccchhhhccCCcccEEEccCCChhhhhhhc-ccchh
Q 037574 548 EKFPHLMITFESDQG--AFPNSVYNQKKLRSLGVEH-GGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIK-KVPKQ 623 (961)
Q Consensus 548 ~~~r~l~l~~~~~~~--~~~~~~~~~~~Lr~L~l~~-~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~-~lp~~ 623 (961)
.+++++++.++.+.. .+|..+..+++|++|++++ +. +. ...|..|.++++|++|+|++| . +. .+|..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~--l~-~~~p~~l~~l~~L~~L~Ls~n-----~-l~~~~p~~ 120 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN--LV-GPIPPAIAKLTQLHYLYITHT-----N-VSGAIPDF 120 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT--EE-SCCCGGGGGCTTCSEEEEEEE-----C-CEEECCGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc--cc-ccCChhHhcCCCCCEEECcCC-----e-eCCcCCHH
Confidence 678899999988866 6788888899999999985 44 22 234566888999999999988 4 44 77888
Q ss_pred hcCCCCcceEeccCCCCcc-cCCcchhccCCCcEeecCCCCCCcccccccccCC-CCcEEEeCCcccc-cCCcCCCCCCC
Q 037574 624 IKRLIHLRYLNLSKNNKIK-KLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLI-NLRHVVNVGTPLS-YMPKGIERWSC 700 (961)
Q Consensus 624 i~~l~~Lr~L~L~~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~-~L~~L~l~~~~l~-~~p~~i~~L~~ 700 (961)
++++++|++|+|++|. +. .+|..+..+++|++|++++|.....+|..+..+. +|++|+++.|.+. .+|..+..++
T Consensus 121 ~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~- 198 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNA-LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN- 198 (313)
T ss_dssp GGGCTTCCEEECCSSE-EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-
T ss_pred HhCCCCCCEEeCCCCc-cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-
Confidence 8899999999999988 55 7888889999999999998873337888888887 8999999888776 4555555553
Q ss_pred CCcCCceEecCCCCCCCCCChhhhhcccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHH
Q 037574 701 LRTLSEFIVSGGNDDKKASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEA 780 (961)
Q Consensus 701 L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 780 (961)
|+.|. +..+. ........+..+++|+.|+++.+....
T Consensus 199 L~~L~---Ls~N~------------------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~---------- 235 (313)
T 1ogq_A 199 LAFVD---LSRNM------------------------------LEGDASVLFGSDKNTQKIHLAKNSLAF---------- 235 (313)
T ss_dssp CSEEE---CCSSE------------------------------EEECCGGGCCTTSCCSEEECCSSEECC----------
T ss_pred ccEEE---CcCCc------------------------------ccCcCCHHHhcCCCCCEEECCCCceee----------
Confidence 33332 22221 000112234556677777777664321
Q ss_pred HHhcCCCCCCcCceEEeeecCccc--cccccccccCceEEEEeCCCCCCcCCCCCCCCccceeeecccc
Q 037574 781 VVEGLELPSNLESMEMFYYRGESI--SLMMIMLSNKLRSLTLDRCVNLKQLPGLGGLPSLESLTLRNMK 847 (961)
Q Consensus 781 ~l~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~ 847 (961)
....+..+++|++|+++++..... .++. .+++|+.|+|++|.....+|..+.+++|+.|++.+++
T Consensus 236 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 236 DLGKVGLSKNLNGLDLRNNRIYGTLPQGLT--QLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp BGGGCCCCTTCCEEECCSSCCEECCCGGGG--GCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred ecCcccccCCCCEEECcCCcccCcCChHHh--cCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 111234446666666666655422 2333 5666666666666444456655666666666666644
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.75 E-value=7.8e-18 Score=183.89 Aligned_cols=90 Identities=29% Similarity=0.444 Sum_probs=76.0
Q ss_pred cCCcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccccccccCC
Q 037574 597 QLTCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLI 676 (961)
Q Consensus 597 ~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~ 676 (961)
....+++|+|+++ . +..+|..++++++|++|+|++|. +..+|..++++++|++|++++|. +..+|..+.+++
T Consensus 79 ~~~~l~~L~L~~n-----~-l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~ 150 (328)
T 4fcg_A 79 TQPGRVALELRSV-----P-LPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPASIASLN 150 (328)
T ss_dssp TSTTCCEEEEESS-----C-CSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCT
T ss_pred cccceeEEEccCC-----C-chhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCc
Confidence 4578999999998 4 77899999999999999999998 88999999999999999999987 778999999999
Q ss_pred CCcEEEeCCcc-cccCCcC
Q 037574 677 NLRHVVNVGTP-LSYMPKG 694 (961)
Q Consensus 677 ~L~~L~l~~~~-l~~~p~~ 694 (961)
+|++|++++|+ +..+|..
T Consensus 151 ~L~~L~L~~n~~~~~~p~~ 169 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEP 169 (328)
T ss_dssp TCCEEEEEEETTCCCCCSC
T ss_pred CCCEEECCCCCCccccChh
Confidence 99999996643 3344443
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.73 E-value=4.6e-18 Score=185.69 Aligned_cols=135 Identities=27% Similarity=0.477 Sum_probs=69.9
Q ss_pred CCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcC
Q 037574 547 HEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKR 626 (961)
Q Consensus 547 ~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~ 626 (961)
...++.|++.++.+. .+|..+..+++|++|++++|. +. .+|..+.++++|++|+|++|. +..+|..+++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~--l~--~lp~~~~~l~~L~~L~Ls~n~------l~~lp~~l~~ 148 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG--LM--ELPDTMQQFAGLETLTLARNP------LRALPASIAS 148 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSC--CC--CCCSCGGGGTTCSEEEEESCC------CCCCCGGGGG
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCC--cc--chhHHHhccCCCCEEECCCCc------cccCcHHHhc
Confidence 355677777776663 455555555555555555554 21 123334555555555555552 4455555555
Q ss_pred CCCcceEeccCCCCcccCCcchhc---------cCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcccccCCc
Q 037574 627 LIHLRYLNLSKNNKIKKLPKTLCE---------LYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLSYMPK 693 (961)
Q Consensus 627 l~~Lr~L~L~~~~~i~~lp~~i~~---------L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~~~p~ 693 (961)
+++|++|+|++|..+..+|..++. +++|++|++++|. +..+|..+.++++|++|++++|.+..+|.
T Consensus 149 l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~ 223 (328)
T 4fcg_A 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGP 223 (328)
T ss_dssp CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCG
T ss_pred CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCch
Confidence 555555555554444455544433 5555555555544 44555555555555555555444444433
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.73 E-value=9.9e-17 Score=175.87 Aligned_cols=292 Identities=18% Similarity=0.230 Sum_probs=172.2
Q ss_pred CccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhccc-chhhcCC
Q 037574 549 KFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKV-PKQIKRL 627 (961)
Q Consensus 549 ~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l 627 (961)
.++.+.+..+.+ ..+|..+ .++++.|+++++. +. .+.+..|.++++|++|+|++| . +..+ |..++.+
T Consensus 32 ~l~~l~~~~~~l-~~lp~~~--~~~l~~L~L~~n~--i~-~~~~~~~~~l~~L~~L~L~~n-----~-l~~~~~~~~~~l 99 (330)
T 1xku_A 32 HLRVVQCSDLGL-EKVPKDL--PPDTALLDLQNNK--IT-EIKDGDFKNLKNLHTLILINN-----K-ISKISPGAFAPL 99 (330)
T ss_dssp ETTEEECTTSCC-CSCCCSC--CTTCCEEECCSSC--CC-CBCTTTTTTCTTCCEEECCSS-----C-CCCBCTTTTTTC
T ss_pred CCeEEEecCCCc-cccCccC--CCCCeEEECCCCc--CC-EeChhhhccCCCCCEEECCCC-----c-CCeeCHHHhcCC
Confidence 345565555554 3344333 2567777777765 32 334445677777777777777 3 4444 6677777
Q ss_pred CCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCccccc-ccccCCCCcEEEeCCccccc---CCcCCCCCCCCCc
Q 037574 628 IHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQ-GMGKLINLRHVVNVGTPLSY---MPKGIERWSCLRT 703 (961)
Q Consensus 628 ~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~l~~---~p~~i~~L~~L~~ 703 (961)
++|++|+|++|. ++.+|..+. ++|++|++++|. +..+|. .+.++++|++|+++.|.+.. .+..+..+++|+.
T Consensus 100 ~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 100 VKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175 (330)
T ss_dssp TTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred CCCCEEECCCCc-CCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCE
Confidence 777777777777 777776554 677777777776 555553 46777777777777766543 2223333333333
Q ss_pred CCceEecCCCCCCCCCChhhhhcccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHHHHh
Q 037574 704 LSEFIVSGGNDDKKASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAVVE 783 (961)
Q Consensus 704 L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 783 (961)
|. +..+.....+ ..+ .++|+.|+++.+.... ....
T Consensus 176 L~---l~~n~l~~l~-------------------------------~~~--~~~L~~L~l~~n~l~~---------~~~~ 210 (330)
T 1xku_A 176 IR---IADTNITTIP-------------------------------QGL--PPSLTELHLDGNKITK---------VDAA 210 (330)
T ss_dssp EE---CCSSCCCSCC-------------------------------SSC--CTTCSEEECTTSCCCE---------ECTG
T ss_pred EE---CCCCccccCC-------------------------------ccc--cccCCEEECCCCcCCc---------cCHH
Confidence 32 2222111000 001 1567777777665431 1123
Q ss_pred cCCCCCCcCceEEeeecCccccccccccccCceEEEEeCCCCCCcCC-CCCCCCccceeeeccccCceEeCccccccCCC
Q 037574 784 GLELPSNLESMEMFYYRGESISLMMIMLSNKLRSLTLDRCVNLKQLP-GLGGLPSLESLTLRNMKRIEKVGNEFLLTDRT 862 (961)
Q Consensus 784 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~l~~l~~~~~~~~~~ 862 (961)
.+..+++|+.|+++++............+++|++|+|++| .+..+| .+..+++|++|++++ +.++.++...+....
T Consensus 211 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~-N~i~~~~~~~f~~~~- 287 (330)
T 1xku_A 211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHN-NNISAIGSNDFCPPG- 287 (330)
T ss_dssp GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCS-SCCCCCCTTSSSCSS-
T ss_pred HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCC-CcCCccChhhcCCcc-
Confidence 3455678888888887766552212236889999999998 455666 578899999999988 457777665443210
Q ss_pred CCCCcccccCcccceeeccccccccccccccccCcccccccccceeccccc
Q 037574 863 SSTGTAVSAFPKLKSLVFLKMKAWREWKYKTKRGKHYKIMPCLCSLTIGYC 913 (961)
Q Consensus 863 ~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~C 913 (961)
....+++|+.|.+.+.+ +..|.. .+.....+++|+.|+++++
T Consensus 288 -----~~~~~~~l~~l~l~~N~-~~~~~i---~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 288 -----YNTKKASYSGVSLFSNP-VQYWEI---QPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp -----CCTTSCCCSEEECCSSS-SCGGGS---CGGGGTTCCCGGGEEC---
T ss_pred -----cccccccccceEeecCc-cccccc---CccccccccceeEEEeccc
Confidence 01235778888887764 333332 0223345666777777664
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.72 E-value=6.7e-18 Score=183.31 Aligned_cols=222 Identities=20% Similarity=0.265 Sum_probs=153.3
Q ss_pred CCccEEEeccCCCcccc-ccchhhhccCCcccEEEccC-CChhhhhhhcccchhhcCCCCcceEeccCCCCcc-cCCcch
Q 037574 572 KKLRSLGVEHGGGFMNG-IVLSKVFDQLTCLRTLELSN-HDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIK-KLPKTL 648 (961)
Q Consensus 572 ~~Lr~L~l~~~~~~~~~-~~~~~~~~~l~~Lr~L~L~~-~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~-~lp~~i 648 (961)
.+++.|++.++. +.+ ...+..+.++++|++|+|++ + .....+|..++++++|++|+|++|. +. .+|..+
T Consensus 50 ~~l~~L~L~~~~--l~~~~~~~~~l~~l~~L~~L~L~~~n-----~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~ 121 (313)
T 1ogq_A 50 YRVNNLDLSGLN--LPKPYPIPSSLANLPYLNFLYIGGIN-----NLVGPIPPAIAKLTQLHYLYITHTN-VSGAIPDFL 121 (313)
T ss_dssp CCEEEEEEECCC--CSSCEECCGGGGGCTTCSEEEEEEET-----TEESCCCGGGGGCTTCSEEEEEEEC-CEEECCGGG
T ss_pred ceEEEEECCCCC--ccCCcccChhHhCCCCCCeeeCCCCC-----cccccCChhHhcCCCCCEEECcCCe-eCCcCCHHH
Confidence 579999999887 332 03566789999999999995 6 4345789999999999999999999 65 899999
Q ss_pred hccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcccc-cCCcCCCCCC-CCCcCCceEecCCCCCCCCCChhhhhc
Q 037574 649 CELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLS-YMPKGIERWS-CLRTLSEFIVSGGNDDKKASKLECLKS 726 (961)
Q Consensus 649 ~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~-~~p~~i~~L~-~L~~L~~~~~~~~~~~~~~~~l~~L~~ 726 (961)
.++++|++|++++|.....+|..+..+++|++|++++|.+. .+|..++.++ +|+.|.. ..+.
T Consensus 122 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L---~~N~------------- 185 (313)
T 1ogq_A 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI---SRNR------------- 185 (313)
T ss_dssp GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEEC---CSSE-------------
T ss_pred hCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEEC---cCCe-------------
Confidence 99999999999998833478999999999999999999887 7787777766 6665542 2211
Q ss_pred ccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHHHHhcCCCCCCcCceEEeeecCccc-c
Q 037574 727 LNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAVVEGLELPSNLESMEMFYYRGESI-S 805 (961)
Q Consensus 727 L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~-~ 805 (961)
+. ...+..+..++ |+.|+++.+... ......+..+++|+.|+++++..... +
T Consensus 186 ---l~--------------~~~~~~~~~l~-L~~L~Ls~N~l~---------~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 238 (313)
T 1ogq_A 186 ---LT--------------GKIPPTFANLN-LAFVDLSRNMLE---------GDASVLFGSDKNTQKIHLAKNSLAFDLG 238 (313)
T ss_dssp ---EE--------------EECCGGGGGCC-CSEEECCSSEEE---------ECCGGGCCTTSCCSEEECCSSEECCBGG
T ss_pred ---ee--------------ccCChHHhCCc-ccEEECcCCccc---------CcCCHHHhcCCCCCEEECCCCceeeecC
Confidence 00 00011223333 777777766432 11223444556777777776665433 3
Q ss_pred ccccccccCceEEEEeCCCCCCcCC-CCCCCCccceeeeccc
Q 037574 806 LMMIMLSNKLRSLTLDRCVNLKQLP-GLGGLPSLESLTLRNM 846 (961)
Q Consensus 806 ~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~ 846 (961)
.+. .+++|++|+|++|.....+| .++.+++|+.|+|+++
T Consensus 239 ~~~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 239 KVG--LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp GCC--CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred ccc--ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence 322 45677777777764333444 3566677777777664
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.71 E-value=6.2e-17 Score=184.75 Aligned_cols=330 Identities=18% Similarity=0.134 Sum_probs=141.2
Q ss_pred CCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcc-------------cEEEccCCChhh
Q 037574 547 HEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCL-------------RTLELSNHDNVL 613 (961)
Q Consensus 547 ~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L-------------r~L~L~~~~~~~ 613 (961)
...++.+.++.+.+ ..+|..+.++++|+.|+++++. +. ...|..+.++.+| +.|++++|.
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~--~~-~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~--- 82 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSE--WE-RNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG--- 82 (454)
T ss_dssp -------------------------CCHHHHHHHHHH--HH-HTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC---
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCc--cc-ccCCcccccchhcchhhhhhhhccCCCEEEecCCc---
Confidence 35677888888887 6778888888888888887765 22 1233334444443 667777662
Q ss_pred hhhhcccchhhcCCCCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcccccCCc
Q 037574 614 CKVIKKVPKQIKRLIHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLSYMPK 693 (961)
Q Consensus 614 ~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~~~p~ 693 (961)
+..+|.. .++|++|++++|. ++.+|.. +.+|++|++++|. +..+|.. .++|++|++++|.+..+|
T Consensus 83 ---l~~lp~~---~~~L~~L~l~~n~-l~~lp~~---~~~L~~L~l~~n~-l~~l~~~---~~~L~~L~L~~n~l~~lp- 147 (454)
T 1jl5_A 83 ---LSSLPEL---PPHLESLVASCNS-LTELPEL---PQSLKSLLVDNNN-LKALSDL---PPLLEYLGVSNNQLEKLP- 147 (454)
T ss_dssp ---CSCCCSC---CTTCSEEECCSSC-CSSCCCC---CTTCCEEECCSSC-CSCCCSC---CTTCCEEECCSSCCSSCC-
T ss_pred ---cccCCCC---cCCCCEEEccCCc-CCccccc---cCCCcEEECCCCc-cCcccCC---CCCCCEEECcCCCCCCCc-
Confidence 5555542 2456666666665 5555542 2455555555544 4443321 135555555555555544
Q ss_pred CCCCCCCCCcCCceEecCCCCCCCCCChhhhhcccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCC
Q 037574 694 GIERWSCLRTLSEFIVSGGNDDKKASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGR 773 (961)
Q Consensus 694 ~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 773 (961)
.++.+++|+.|.. ..+.....+..+ .+|+ .+.+.+ ..... . ..+..+++|+.|+++++.......
T Consensus 148 ~~~~l~~L~~L~l---~~N~l~~lp~~~---~~L~----~L~L~~---n~l~~-l-~~~~~l~~L~~L~l~~N~l~~l~~ 212 (454)
T 1jl5_A 148 ELQNSSFLKIIDV---DNNSLKKLPDLP---PSLE----FIAAGN---NQLEE-L-PELQNLPFLTAIYADNNSLKKLPD 212 (454)
T ss_dssp CCTTCTTCCEEEC---CSSCCSCCCCCC---TTCC----EEECCS---SCCSS-C-CCCTTCTTCCEEECCSSCCSSCCC
T ss_pred ccCCCCCCCEEEC---CCCcCcccCCCc---cccc----EEECcC---CcCCc-C-ccccCCCCCCEEECCCCcCCcCCC
Confidence 3444444444332 222211111111 1111 111111 10000 0 123344444444444443211000
Q ss_pred Ccc----------chHHHHhcCCCCCCcCceEEeeecCccccccccccccCceEEEEeCCCCCCcCCCCCCCCccceeee
Q 037574 774 KKE----------DDEAVVEGLELPSNLESMEMFYYRGESISLMMIMLSNKLRSLTLDRCVNLKQLPGLGGLPSLESLTL 843 (961)
Q Consensus 774 ~~~----------~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L 843 (961)
... ... .+..+..+++|+.|+++++....++. .+++|+.|++++|. +..+|.. +++|+.|++
T Consensus 213 ~~~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~-l~~l~~~--~~~L~~L~l 284 (454)
T 1jl5_A 213 LPLSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNY-LTDLPEL--PQSLTFLDV 284 (454)
T ss_dssp CCTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSC-CSCCCCC--CTTCCEEEC
T ss_pred CcCcccEEECcCCcCC-cccccCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCc-ccccCcc--cCcCCEEEC
Confidence 000 000 01123344556666666554443311 23566666666652 3334432 366777777
Q ss_pred ccccCceEeCcc-----ccccCCCCCCCcccccC-cccceeeccccccccccccccccCcccccccccceecccccccCc
Q 037574 844 RNMKRIEKVGNE-----FLLTDRTSSTGTAVSAF-PKLKSLVFLKMKAWREWKYKTKRGKHYKIMPCLCSLTIGYCNELE 917 (961)
Q Consensus 844 ~~~~~l~~l~~~-----~~~~~~~~~~~~~~~~f-p~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~C~~L~ 917 (961)
+++ .++.++.. .+..+.+.+... ..+ ++|+.|++.++ .+..+.. .+++|+.|++++| +++
T Consensus 285 s~N-~l~~l~~~~~~L~~L~l~~N~l~~i--~~~~~~L~~L~Ls~N-~l~~lp~---------~~~~L~~L~L~~N-~l~ 350 (454)
T 1jl5_A 285 SEN-IFSGLSELPPNLYYLNASSNEIRSL--CDLPPSLEELNVSNN-KLIELPA---------LPPRLERLIASFN-HLA 350 (454)
T ss_dssp CSS-CCSEESCCCTTCCEEECCSSCCSEE--CCCCTTCCEEECCSS-CCSCCCC---------CCTTCCEEECCSS-CCS
T ss_pred cCC-ccCcccCcCCcCCEEECcCCcCCcc--cCCcCcCCEEECCCC-ccccccc---------cCCcCCEEECCCC-ccc
Confidence 663 34443311 011111222111 122 36666666654 2332221 3688999999885 778
Q ss_pred CCCCCCCCCCCCeEEEcccc
Q 037574 918 MLPAEHFPDTLKDLKIISCS 937 (961)
Q Consensus 918 ~lp~~~l~~sL~~L~i~~c~ 937 (961)
.+|. .+.+|+.|+++++.
T Consensus 351 ~lp~--~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 351 EVPE--LPQNLKQLHVEYNP 368 (454)
T ss_dssp CCCC--CCTTCCEEECCSSC
T ss_pred cccc--hhhhccEEECCCCC
Confidence 8887 45569999998875
No 49
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.69 E-value=8.1e-16 Score=175.49 Aligned_cols=303 Identities=21% Similarity=0.269 Sum_probs=182.2
Q ss_pred cCCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhc
Q 037574 546 SHEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIK 625 (961)
Q Consensus 546 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~ 625 (961)
.++++++++++.|.+.. +|. ..++|+.|++++|. +. . ++. -.++|++|++++|. +..+| .++
T Consensus 89 ~~~~L~~L~l~~n~l~~-lp~---~~~~L~~L~l~~n~--l~-~-l~~---~~~~L~~L~L~~n~------l~~lp-~~~ 150 (454)
T 1jl5_A 89 LPPHLESLVASCNSLTE-LPE---LPQSLKSLLVDNNN--LK-A-LSD---LPPLLEYLGVSNNQ------LEKLP-ELQ 150 (454)
T ss_dssp CCTTCSEEECCSSCCSS-CCC---CCTTCCEEECCSSC--CS-C-CCS---CCTTCCEEECCSSC------CSSCC-CCT
T ss_pred CcCCCCEEEccCCcCCc-ccc---ccCCCcEEECCCCc--cC-c-ccC---CCCCCCEEECcCCC------CCCCc-ccC
Confidence 45678888888887743 553 24788888888875 22 1 111 12688899998883 66777 588
Q ss_pred CCCCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcccccCCcCCCCCCCCCcCC
Q 037574 626 RLIHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLSYMPKGIERWSCLRTLS 705 (961)
Q Consensus 626 ~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~~~p~~i~~L~~L~~L~ 705 (961)
.+++|++|++++|. ++.+|..+ .+|++|++++|. +..+| .++.+++|++|++++|.+..+|... .+|+.|.
T Consensus 151 ~l~~L~~L~l~~N~-l~~lp~~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~ 221 (454)
T 1jl5_A 151 NSSFLKIIDVDNNS-LKKLPDLP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIV 221 (454)
T ss_dssp TCTTCCEEECCSSC-CSCCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEE
T ss_pred CCCCCCEEECCCCc-CcccCCCc---ccccEEECcCCc-CCcCc-cccCCCCCCEEECCCCcCCcCCCCc---CcccEEE
Confidence 88899999999887 77787644 588899998886 77787 6888899999999888887776543 2444443
Q ss_pred ceEecCCCCCCCCCChhhhhcccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHHHHhcC
Q 037574 706 EFIVSGGNDDKKASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAVVEGL 785 (961)
Q Consensus 706 ~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l 785 (961)
+..+.....+ .+..+..|+ .+.+.+..-.. ++. ..++|+.|+++.+.... +..
T Consensus 222 ---l~~n~l~~lp----~~~~l~~L~-~L~l~~N~l~~----l~~---~~~~L~~L~l~~N~l~~----------l~~-- 274 (454)
T 1jl5_A 222 ---AGNNILEELP----ELQNLPFLT-TIYADNNLLKT----LPD---LPPSLEALNVRDNYLTD----------LPE-- 274 (454)
T ss_dssp ---CCSSCCSSCC----CCTTCTTCC-EEECCSSCCSS----CCS---CCTTCCEEECCSSCCSC----------CCC--
T ss_pred ---CcCCcCCccc----ccCCCCCCC-EEECCCCcCCc----ccc---cccccCEEECCCCcccc----------cCc--
Confidence 4444332222 233333333 33333211101 011 13678888888775431 111
Q ss_pred CCCCCcCceEEeeecCccccccccccccCceEEEEeCCCCCCcCCCCCCCCccceeeeccccCceEeCccccccCCCCCC
Q 037574 786 ELPSNLESMEMFYYRGESISLMMIMLSNKLRSLTLDRCVNLKQLPGLGGLPSLESLTLRNMKRIEKVGNEFLLTDRTSST 865 (961)
Q Consensus 786 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~l~~l~~~~~~~~~~~~~ 865 (961)
.+++|+.|+++++....++. ..++|+.|++++| .+..++.+ .++|+.|+++++ .++.++
T Consensus 275 -~~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N-~l~~i~~~--~~~L~~L~Ls~N-~l~~lp------------ 333 (454)
T 1jl5_A 275 -LPQSLTFLDVSENIFSGLSE----LPPNLYYLNASSN-EIRSLCDL--PPSLEELNVSNN-KLIELP------------ 333 (454)
T ss_dssp -CCTTCCEEECCSSCCSEESC----CCTTCCEEECCSS-CCSEECCC--CTTCCEEECCSS-CCSCCC------------
T ss_pred -ccCcCCEEECcCCccCcccC----cCCcCCEEECcCC-cCCcccCC--cCcCCEEECCCC-cccccc------------
Confidence 13678888888876554421 2367888888887 34444422 248888888873 344332
Q ss_pred CcccccCcccceeeccccccccccccccccCcccccccccceecccccccCcCC---CCCC--C------------CCCC
Q 037574 866 GTAVSAFPKLKSLVFLKMKAWREWKYKTKRGKHYKIMPCLCSLTIGYCNELEML---PAEH--F------------PDTL 928 (961)
Q Consensus 866 ~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~C~~L~~l---p~~~--l------------~~sL 928 (961)
..+++|+.|++.++ .+..+. . .+++|++|++++| .+..+ |... + +.+|
T Consensus 334 ----~~~~~L~~L~L~~N-~l~~lp------~---~l~~L~~L~L~~N-~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L 398 (454)
T 1jl5_A 334 ----ALPPRLERLIASFN-HLAEVP------E---LPQNLKQLHVEYN-PLREFPDIPESVEDLRMNSHLAEVPELPQNL 398 (454)
T ss_dssp ----CCCTTCCEEECCSS-CCSCCC------C---CCTTCCEEECCSS-CCSSCCCCCTTCCEEECCC------------
T ss_pred ----ccCCcCCEEECCCC-cccccc------c---hhhhccEEECCCC-CCCcCCCChHHHHhhhhcccccccccccCcC
Confidence 34689999999886 344322 2 5789999999996 55553 3321 1 2458
Q ss_pred CeEEEccccc
Q 037574 929 KDLKIISCSK 938 (961)
Q Consensus 929 ~~L~i~~c~~ 938 (961)
+.|++++++-
T Consensus 399 ~~L~ls~N~l 408 (454)
T 1jl5_A 399 KQLHVETNPL 408 (454)
T ss_dssp ----------
T ss_pred CEEECCCCcC
Confidence 8888888654
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.69 E-value=2.5e-16 Score=172.71 Aligned_cols=241 Identities=17% Similarity=0.184 Sum_probs=172.1
Q ss_pred cCCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhc
Q 037574 546 SHEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIK 625 (961)
Q Consensus 546 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~ 625 (961)
..+.++.|++.+|.+....+..+..+++|++|++.+|. +. .+.+..|.++++|++|+|++|. +..+|..+.
T Consensus 52 ~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~--l~-~~~~~~~~~l~~L~~L~L~~n~------l~~l~~~~~ 122 (332)
T 2ft3_A 52 ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK--IS-KIHEKAFSPLRKLQKLYISKNH------LVEIPPNLP 122 (332)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC--CC-EECGGGSTTCTTCCEEECCSSC------CCSCCSSCC
T ss_pred CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc--cC-ccCHhHhhCcCCCCEEECCCCc------CCccCcccc
Confidence 45689999999998865556689999999999999986 43 4456779999999999999994 778888766
Q ss_pred CCCCcceEeccCCCCcccCCc-chhccCCCcEeecCCCCCCc---ccccccccCCCCcEEEeCCcccccCCcCCCCCCCC
Q 037574 626 RLIHLRYLNLSKNNKIKKLPK-TLCELYNLQTLELSWCSNLR---NLPQGMGKLINLRHVVNVGTPLSYMPKGIERWSCL 701 (961)
Q Consensus 626 ~l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~---~lP~~i~~L~~L~~L~l~~~~l~~~p~~i~~L~~L 701 (961)
++|++|++++|. +..+|. .+..+++|++|++++|. +. ..|..+..+ +|++|+++.|.+..+|..+. ++|
T Consensus 123 --~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L 195 (332)
T 2ft3_A 123 --SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETL 195 (332)
T ss_dssp --TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSC
T ss_pred --ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCC
Confidence 799999999999 888875 58999999999999987 54 446667777 99999999999999887665 566
Q ss_pred CcCCceEecCCCCCCCCCChhhhhcccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHHH
Q 037574 702 RTLSEFIVSGGNDDKKASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAV 781 (961)
Q Consensus 702 ~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 781 (961)
+.|.. ..+..... ....+..+++|+.|+++.+..... .
T Consensus 196 ~~L~l---~~n~i~~~------------------------------~~~~l~~l~~L~~L~L~~N~l~~~---------~ 233 (332)
T 2ft3_A 196 NELHL---DHNKIQAI------------------------------ELEDLLRYSKLYRLGLGHNQIRMI---------E 233 (332)
T ss_dssp SCCBC---CSSCCCCC------------------------------CTTSSTTCTTCSCCBCCSSCCCCC---------C
T ss_pred CEEEC---CCCcCCcc------------------------------CHHHhcCCCCCCEEECCCCcCCcC---------C
Confidence 66543 22221100 011234456666777766644310 0
Q ss_pred HhcCCCCCCcCceEEeeecCccc-cccccccccCceEEEEeCCCCCCcCCC--CC------CCCccceeeecccc
Q 037574 782 VEGLELPSNLESMEMFYYRGESI-SLMMIMLSNKLRSLTLDRCVNLKQLPG--LG------GLPSLESLTLRNMK 847 (961)
Q Consensus 782 l~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~l~~--l~------~lp~L~~L~L~~~~ 847 (961)
...+..+++|+.|+++++....+ .++. .+++|+.|+|++| .+..++. +. ..++|+.|++.+++
T Consensus 234 ~~~~~~l~~L~~L~L~~N~l~~lp~~l~--~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 234 NGSLSFLPTLRELHLDNNKLSRVPAGLP--DLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp TTGGGGCTTCCEEECCSSCCCBCCTTGG--GCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred hhHhhCCCCCCEEECCCCcCeecChhhh--cCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCc
Confidence 11233456788888877776655 3443 6788888888887 3444442 21 25778888888754
No 51
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.67 E-value=2e-16 Score=190.30 Aligned_cols=131 Identities=22% Similarity=0.286 Sum_probs=108.1
Q ss_pred CCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccch-hhcCCCCcceEeccCCCC
Q 037574 562 GAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPK-QIKRLIHLRYLNLSKNNK 640 (961)
Q Consensus 562 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~ 640 (961)
..+|..+ .++++.|++++|. +. .+.+..|.++++|++|+|++| . +..+|. .|.+|++|++|+|++|.
T Consensus 44 ~~vP~~l--p~~~~~LdLs~N~--i~-~l~~~~f~~l~~L~~L~Ls~N-----~-i~~i~~~~f~~L~~L~~L~Ls~N~- 111 (635)
T 4g8a_A 44 YKIPDNL--PFSTKNLDLSFNP--LR-HLGSYSFFSFPELQVLDLSRC-----E-IQTIEDGAYQSLSHLSTLILTGNP- 111 (635)
T ss_dssp SSCCSSS--CTTCCEEECTTSC--CC-EECTTTTTTCTTCCEEECTTC-----C-CCEECTTTTTTCTTCCEEECTTCC-
T ss_pred CccCCCC--CcCCCEEEeeCCC--CC-CCCHHHHhCCCCCCEEECCCC-----c-CCCcChhHhcCCCCCCEEEccCCc-
Confidence 3456433 2589999999987 44 456677999999999999999 4 777754 68999999999999999
Q ss_pred cccCCc-chhccCCCcEeecCCCCCCccccc-ccccCCCCcEEEeCCccccc--CCcCCCCCCCCCcCC
Q 037574 641 IKKLPK-TLCELYNLQTLELSWCSNLRNLPQ-GMGKLINLRHVVNVGTPLSY--MPKGIERWSCLRTLS 705 (961)
Q Consensus 641 i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~l~~--~p~~i~~L~~L~~L~ 705 (961)
++.+|. .|.+|++|++|++++|. +..+|. .++++++|++|+++.|.+.. .|..++.+++|++|.
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 179 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 179 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred CCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhc
Confidence 998885 68999999999999987 888876 48999999999999998875 456677777777664
No 52
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.66 E-value=2.3e-17 Score=146.85 Aligned_cols=79 Identities=22% Similarity=0.456 Sum_probs=74.7
Q ss_pred HHHHHHHHhhchHHHH-HHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhc--ccCcHHHHHHHHHHHhhhHhhhhhHHH
Q 037574 6 TVSTVLDQLSSITQQM-NEARLVVGGVVTDVEKLRNHLKAIQEVLDDAEKR--QVKEKAVEDWLRELKDTSYAIDDTLDE 82 (961)
Q Consensus 6 ~v~~~~~kl~~~~~~~-~e~~~~~~~v~~~~~~l~~~l~~i~~~l~~a~~~--~~~~~~~~~wl~~l~~~~~d~ed~ld~ 82 (961)
+|+++++||+++ + +|+.++.| |++++++|+++|++|++||.+|+.+ +.+++.++.|+++||+++||+||+||+
T Consensus 2 ~v~~ll~KL~~l---l~~E~~l~~g-v~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~ 77 (115)
T 3qfl_A 2 AISNLIPKLGEL---LTEEFKLHKG-VKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDK 77 (115)
T ss_dssp TTCSHHHHHHHH---HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH---HHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999 8 99999999 9999999999999999999999987 568999999999999999999999999
Q ss_pred HHHHHH
Q 037574 83 WNTAIQ 88 (961)
Q Consensus 83 ~~~~~~ 88 (961)
|.++..
T Consensus 78 f~~~~~ 83 (115)
T 3qfl_A 78 FLVQVD 83 (115)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999874
No 53
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.66 E-value=9.8e-16 Score=167.91 Aligned_cols=242 Identities=18% Similarity=0.209 Sum_probs=175.3
Q ss_pred cCCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhc
Q 037574 546 SHEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIK 625 (961)
Q Consensus 546 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~ 625 (961)
.++.++.|++++|.+....+..+..+++|++|++.+|. +. .+.+..|..+++|++|+|++|. +..+|..+.
T Consensus 50 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~--l~-~~~~~~~~~l~~L~~L~Ls~n~------l~~l~~~~~ 120 (330)
T 1xku_A 50 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK--IS-KISPGAFAPLVKLERLYLSKNQ------LKELPEKMP 120 (330)
T ss_dssp CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC--CC-CBCTTTTTTCTTCCEEECCSSC------CSBCCSSCC
T ss_pred CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc--CC-eeCHHHhcCCCCCCEEECCCCc------CCccChhhc
Confidence 45789999999999865555578999999999999986 33 3456778999999999999994 778887765
Q ss_pred CCCCcceEeccCCCCcccCCc-chhccCCCcEeecCCCCCCc---ccccccccCCCCcEEEeCCcccccCCcCCCCCCCC
Q 037574 626 RLIHLRYLNLSKNNKIKKLPK-TLCELYNLQTLELSWCSNLR---NLPQGMGKLINLRHVVNVGTPLSYMPKGIERWSCL 701 (961)
Q Consensus 626 ~l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~---~lP~~i~~L~~L~~L~l~~~~l~~~p~~i~~L~~L 701 (961)
++|++|++++|. +..+|. .+.++++|++|++++|. +. ..|..+..+++|++|++++|.+..+|..+. ++|
T Consensus 121 --~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L 194 (330)
T 1xku_A 121 --KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSL 194 (330)
T ss_dssp --TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTC
T ss_pred --ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccC
Confidence 799999999998 777764 58999999999999987 43 456778999999999999999988887654 445
Q ss_pred CcCCceEecCCCCCCCCCChhhhhcccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHHH
Q 037574 702 RTLSEFIVSGGNDDKKASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAV 781 (961)
Q Consensus 702 ~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 781 (961)
+.|. +..+... ......+..+++|+.|+++++..... .
T Consensus 195 ~~L~---l~~n~l~------------------------------~~~~~~~~~l~~L~~L~Ls~n~l~~~---------~ 232 (330)
T 1xku_A 195 TELH---LDGNKIT------------------------------KVDAASLKGLNNLAKLGLSFNSISAV---------D 232 (330)
T ss_dssp SEEE---CTTSCCC------------------------------EECTGGGTTCTTCCEEECCSSCCCEE---------C
T ss_pred CEEE---CCCCcCC------------------------------ccCHHHhcCCCCCCEEECCCCcCcee---------C
Confidence 4443 3332211 00112344566777777777654310 0
Q ss_pred HhcCCCCCCcCceEEeeecCccc-cccccccccCceEEEEeCCCCCCcCCC--C------CCCCccceeeecccc
Q 037574 782 VEGLELPSNLESMEMFYYRGESI-SLMMIMLSNKLRSLTLDRCVNLKQLPG--L------GGLPSLESLTLRNMK 847 (961)
Q Consensus 782 l~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~l~~--l------~~lp~L~~L~L~~~~ 847 (961)
...+..+++|+.|+++++....+ .++. .+++|++|+|++| .+..++. + ...++|+.|++.+++
T Consensus 233 ~~~~~~l~~L~~L~L~~N~l~~lp~~l~--~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 233 NGSLANTPHLRELHLNNNKLVKVPGGLA--DHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp TTTGGGSTTCCEEECCSSCCSSCCTTTT--TCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred hhhccCCCCCCEEECCCCcCccCChhhc--cCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCc
Confidence 11233457888888888877666 4444 6788899999887 3444442 1 235788888888743
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.65 E-value=7.7e-18 Score=200.90 Aligned_cols=134 Identities=13% Similarity=0.063 Sum_probs=77.4
Q ss_pred CCCccEEEEEeccCCCCCcccccC-CC-CccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhh
Q 037574 547 HEKFPHLMITFESDQGAFPNSVYN-QK-KLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQI 624 (961)
Q Consensus 547 ~~~~r~l~l~~~~~~~~~~~~~~~-~~-~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i 624 (961)
.+++++|.+..+.+....+..+.. ++ +|++|.+.+|.+... ..+......+++|++|+|++|... ......++..+
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~~~-~~~~~~l~~~~ 188 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTT-DGLLSIVTHCRKIKTLLMEESSFS-EKDGKWLHELA 188 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEH-HHHHHHHHHCTTCSEEECTTCEEE-CCCSHHHHHHH
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCH-HHHHHHHhhCCCCCEEECcccccc-CcchhHHHHHH
Confidence 356777777776553222223333 23 377777776652211 123334456777777777777200 00001133444
Q ss_pred cCCCCcceEeccCCCCcc-----cCCcchhccCCCcEeecCCCCCCcccccccccCCCCcEEEeC
Q 037574 625 KRLIHLRYLNLSKNNKIK-----KLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNV 684 (961)
Q Consensus 625 ~~l~~Lr~L~L~~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~ 684 (961)
..+++|++|+|++|. +. .++..+.++++|++|++++|. +..+|..+..+++|++|.++
T Consensus 189 ~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGG 251 (592)
T ss_dssp HHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEEC
T ss_pred hcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhccc
Confidence 566777777777776 43 344555677777777777766 66677667777777777774
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.63 E-value=8.5e-16 Score=166.47 Aligned_cols=223 Identities=20% Similarity=0.201 Sum_probs=119.9
Q ss_pred CCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhccc---chhhcCCCCcceEeccCCCCcccCCcch
Q 037574 572 KKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKV---PKQIKRLIHLRYLNLSKNNKIKKLPKTL 648 (961)
Q Consensus 572 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~l---p~~i~~l~~Lr~L~L~~~~~i~~lp~~i 648 (961)
++|+.|++.++. +. .+.+..|.++++|++|+|++|. +..+ |..+..+++|++|+|++|. +..+|..+
T Consensus 28 ~~l~~L~L~~n~--l~-~i~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~ 97 (306)
T 2z66_A 28 SSATRLELESNK--LQ-SLPHGVFDKLTQLTKLSLSSNG------LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNF 97 (306)
T ss_dssp TTCCEEECCSSC--CC-CCCTTTTTTCTTCSEEECCSSC------CCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEE
T ss_pred CCCCEEECCCCc--cC-ccCHhHhhccccCCEEECCCCc------cCcccCcccccccccccCEEECCCCc-cccChhhc
Confidence 466777776665 22 3334446667777777777663 3322 4556666777777777776 66666666
Q ss_pred hccCCCcEeecCCCCCCccccc--ccccCCCCcEEEeCCcccccCCc-CCCCCCCCCcCCceEecCCCCCCCCCChhhhh
Q 037574 649 CELYNLQTLELSWCSNLRNLPQ--GMGKLINLRHVVNVGTPLSYMPK-GIERWSCLRTLSEFIVSGGNDDKKASKLECLK 725 (961)
Q Consensus 649 ~~L~~L~~L~l~~~~~l~~lP~--~i~~L~~L~~L~l~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~ 725 (961)
..+++|++|++++|. +..+|. .+..+++|++|++++|.+...+. .+..+++|+.|. +..+. +.
T Consensus 98 ~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~---l~~n~-------l~--- 163 (306)
T 2z66_A 98 LGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK---MAGNS-------FQ--- 163 (306)
T ss_dssp ETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE---CTTCE-------EG---
T ss_pred CCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEE---CCCCc-------cc---
Confidence 777777777777665 555543 56667777777776666554332 244444444432 11111 00
Q ss_pred cccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHHHHhcCCCCCCcCceEEeeecCcccc
Q 037574 726 SLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAVVEGLELPSNLESMEMFYYRGESIS 805 (961)
Q Consensus 726 ~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~ 805 (961)
.......+..+++|+.|+++.+.... .....+..+++|+.|+++++......
T Consensus 164 -------------------~~~~~~~~~~l~~L~~L~Ls~n~l~~---------~~~~~~~~l~~L~~L~L~~N~l~~~~ 215 (306)
T 2z66_A 164 -------------------ENFLPDIFTELRNLTFLDLSQCQLEQ---------LSPTAFNSLSSLQVLNMSHNNFFSLD 215 (306)
T ss_dssp -------------------GGEECSCCTTCTTCCEEECTTSCCCE---------ECTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred -------------------cccchhHHhhCcCCCEEECCCCCcCC---------cCHHHhcCCCCCCEEECCCCccCccC
Confidence 00011223344556666665554321 01122333456666666666554442
Q ss_pred ccccccccCceEEEEeCCCCCCcCC-CCCCCC-ccceeeeccc
Q 037574 806 LMMIMLSNKLRSLTLDRCVNLKQLP-GLGGLP-SLESLTLRNM 846 (961)
Q Consensus 806 ~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp-~L~~L~L~~~ 846 (961)
......+++|+.|+|++|......| .+..+| +|++|+|+++
T Consensus 216 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence 2222356677777777774333333 355554 7777777763
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.62 E-value=1.6e-15 Score=167.97 Aligned_cols=245 Identities=16% Similarity=0.160 Sum_probs=125.6
Q ss_pred CCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhccc-chhhcCCCCcceEeccCCCCcccCCcc-hh
Q 037574 572 KKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKV-PKQIKRLIHLRYLNLSKNNKIKKLPKT-LC 649 (961)
Q Consensus 572 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~i~~lp~~-i~ 649 (961)
++|++|+++++. +. .+.+..|.++++|++|+|++| . +..+ |..++++++|++|+|++|. ++.+|.. ++
T Consensus 52 ~~L~~L~l~~n~--i~-~~~~~~~~~l~~L~~L~L~~n-----~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~ 121 (353)
T 2z80_A 52 EAVKSLDLSNNR--IT-YISNSDLQRCVNLQALVLTSN-----G-INTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFK 121 (353)
T ss_dssp TTCCEEECTTSC--CC-EECTTTTTTCTTCCEEECTTS-----C-CCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHT
T ss_pred ccCcEEECCCCc--Cc-ccCHHHhccCCCCCEEECCCC-----c-cCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhC
Confidence 467777777665 32 333445667777777777776 3 4444 4456777777777777776 6666654 66
Q ss_pred ccCCCcEeecCCCCCCccccc--ccccCCCCcEEEeCCc-ccccCC-cCCCCCCCCCcCCceEecCCCCCCC-CCChhhh
Q 037574 650 ELYNLQTLELSWCSNLRNLPQ--GMGKLINLRHVVNVGT-PLSYMP-KGIERWSCLRTLSEFIVSGGNDDKK-ASKLECL 724 (961)
Q Consensus 650 ~L~~L~~L~l~~~~~l~~lP~--~i~~L~~L~~L~l~~~-~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~-~~~l~~L 724 (961)
++++|++|++++|. +..+|. .+..+++|++|+++.| .+..++ ..++.+++|+.|.... +..... +..+..+
T Consensus 122 ~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~---n~l~~~~~~~l~~l 197 (353)
T 2z80_A 122 PLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA---SDLQSYEPKSLKSI 197 (353)
T ss_dssp TCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE---TTCCEECTTTTTTC
T ss_pred CCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC---CCcCccCHHHHhcc
Confidence 77777777777765 666665 4666777777777555 344443 3455555555554322 211110 1122222
Q ss_pred hcccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHHHHhcCCCCCCcCceEEeeecCccc
Q 037574 725 KSLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAVVEGLELPSNLESMEMFYYRGESI 804 (961)
Q Consensus 725 ~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~ 804 (961)
++|+ .+.+.+..-.... ...+..+++|+.|+++.+....... ..+........++.+.+.++.....
T Consensus 198 ~~L~----~L~l~~n~l~~~~---~~~~~~~~~L~~L~L~~n~l~~~~~------~~l~~~~~~~~l~~l~L~~~~l~~~ 264 (353)
T 2z80_A 198 QNVS----HLILHMKQHILLL---EIFVDVTSSVECLELRDTDLDTFHF------SELSTGETNSLIKKFTFRNVKITDE 264 (353)
T ss_dssp SEEE----EEEEECSCSTTHH---HHHHHHTTTEEEEEEESCBCTTCCC------C------CCCCCCEEEEESCBCCHH
T ss_pred ccCC----eecCCCCccccch---hhhhhhcccccEEECCCCccccccc------cccccccccchhhccccccccccCc
Confidence 2222 2222221111111 1112334666777777665431000 0011112234555555555443221
Q ss_pred ------cccccccccCceEEEEeCCCCCCcCCC--CCCCCccceeeeccc
Q 037574 805 ------SLMMIMLSNKLRSLTLDRCVNLKQLPG--LGGLPSLESLTLRNM 846 (961)
Q Consensus 805 ------~~~~~~~l~~L~~L~L~~~~~~~~l~~--l~~lp~L~~L~L~~~ 846 (961)
.++ ..+++|+.|+|++| .+..+|. ++.+++|++|+|+++
T Consensus 265 ~l~~l~~~l--~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 265 SLFQVMKLL--NQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp HHHHHHHHH--HTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred chhhhHHHH--hcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCC
Confidence 122 24566777777666 3445553 456677777777664
No 57
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.62 E-value=1.5e-14 Score=159.92 Aligned_cols=303 Identities=12% Similarity=0.121 Sum_probs=181.7
Q ss_pred cCCCCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCC--
Q 037574 159 AIDPLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPR-- 236 (961)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-- 236 (961)
...+..|+||+.+++.+.+++.. + +++.|+|++|+|||||++++++. . . .+|+++....
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~----------~--~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~ 68 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLEN----------Y--PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAE 68 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHH----------C--SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHT
T ss_pred CCChHhcCChHHHHHHHHHHHhc----------C--CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeeccccc
Confidence 34566799999999999998863 2 68999999999999999999873 2 1 6777764332
Q ss_pred ----CHHHHHHHHHHHhcC-----------------CCC-CcccHHHHHHHHHHHhcC-CceEEEeecccCCC------C
Q 037574 237 ----DEIRVAKAILESLKG-----------------SVS-SQVEMETVLQYINEFVQG-KKVLLVLDDVWWNA------C 287 (961)
Q Consensus 237 ----~~~~~~~~il~~l~~-----------------~~~-~~~~~~~~~~~l~~~l~~-kr~LlVlDdvw~~~------~ 287 (961)
+...++..+...+.. ... ...+.+++.+.+.+.... ++++||+||+++-. +
T Consensus 69 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~ 148 (350)
T 2qen_A 69 RGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGG 148 (350)
T ss_dssp TTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTT
T ss_pred ccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccch
Confidence 456666666665532 000 123456666667666543 48999999997211 1
Q ss_pred hhhHHHHHHhccCCCCCcEEEEecCCCcccccc----cccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCc
Q 037574 288 PRYWEQLMYSLKSGSEGSRILVTRRGEKNGTNM----TEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDR 363 (961)
Q Consensus 288 ~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~----~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~ 363 (961)
.+.+..+....... .+.++|+|++.......+ .... ...+.....+.+.+|+.+|+.+++.+.........
T Consensus 149 ~~~~~~L~~~~~~~-~~~~~il~g~~~~~l~~~l~~~~~~~--~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~-- 223 (350)
T 2qen_A 149 KELLALFAYAYDSL-PNLKIILTGSEVGLLHDFLKITDYES--PLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV-- 223 (350)
T ss_dssp HHHHHHHHHHHHHC-TTEEEEEEESSHHHHHHHHCTTCTTS--TTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC--
T ss_pred hhHHHHHHHHHHhc-CCeEEEEECCcHHHHHHHHhhcCCCC--ccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC--
Confidence 23344444433322 467899998765421110 0000 00111125799999999999999987542211111
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHhhccCCCCHHHHHH-HhhhhhcccchhhhhccCCCCcchhhh-HhhhcCCChHHH
Q 037574 364 EKFEPIGRLVVGKCKGLPFAVKILGSLLRFKTSIEEWQS-VLDSEIWNLDSKICKRAGVGDEYFSPL-LLSYYDLSPALK 441 (961)
Q Consensus 364 ~~l~~~~~~I~~~c~G~PLai~~~~~~l~~~~~~~~w~~-~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~sy~~L~~~~k 441 (961)
-.+.+..|++.|+|+|+++..++..+....+...+.. ..+.... .+...+ .+.+ + ++..+
T Consensus 224 --~~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~~l~~-~-~~~~~ 285 (350)
T 2qen_A 224 --PENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKG--------------LIMGELEELRR-R-SPRYV 285 (350)
T ss_dssp --CHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH--------------HHHHHHHHHHH-H-CHHHH
T ss_pred --CHHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHH--------------HHHHHHHHHHh-C-ChhHH
Confidence 1346788999999999999998875422112222211 1111000 011111 1122 2 78899
Q ss_pred HHhhHhccCCCCcccChHHHHHHHHHcCcccccccccHHHHHHHHHHHHHhCCCCcccccCCCCCeEEEEEe-CchHHHH
Q 037574 442 KCFLYCSIFPKNYEIEKDRLIKLWMAQGYLKLLESEDMEVIGEEYFANLASRSLFQDFQKSEFDGRIIRCQM-HPIVHEF 520 (961)
Q Consensus 442 ~cfl~~a~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~~-Hdlv~~~ 520 (961)
..+..+|. + .++...+.....+.. - +.+ ......+++.|.+.+++.... + .|++ |++++++
T Consensus 286 ~~l~~la~---g-~~~~~~l~~~~~~~~-~----~~~-~~~~~~~l~~L~~~gli~~~~----~----~y~~~~p~~~~~ 347 (350)
T 2qen_A 286 DILRAIAL---G-YNRWSLIRDYLAVKG-T----KIP-EPRLYALLENLKKMNWIVEED----N----TYKIADPVVATV 347 (350)
T ss_dssp HHHHHHHT---T-CCSHHHHHHHHHHTT-C----CCC-HHHHHHHHHHHHHTTSEEEET----T----EEEESSHHHHHH
T ss_pred HHHHHHHh---C-CCCHHHHHHHHHHHh-C----CCC-HHHHHHHHHHHHhCCCEEecC----C----EEEEecHHHHHH
Confidence 99999988 2 245555555442211 0 111 244678999999999997652 1 4555 7787776
Q ss_pred H
Q 037574 521 A 521 (961)
Q Consensus 521 a 521 (961)
.
T Consensus 348 ~ 348 (350)
T 2qen_A 348 L 348 (350)
T ss_dssp H
T ss_pred H
Confidence 5
No 58
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.62 E-value=4.4e-15 Score=168.31 Aligned_cols=311 Identities=13% Similarity=0.047 Sum_probs=184.1
Q ss_pred CCccccchHHHHHHHHHH-hCCCCCCcCCCCCCccEEEE--EcCCCchHHHHHHHHhCChhhh---ccCc-eeEEEEeCC
Q 037574 162 PLEFHGRNVEKKNILQLL-KGESSDEESGSKPTLPVIWI--LGKEGIGKTALARQVFDDSDVK---ANFD-KRIWVSASC 234 (961)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~~~~~vv~I--~G~gGiGKTtLa~~v~~~~~~~---~~F~-~~~wv~~s~ 234 (961)
+..++||+.+++++.+++ .....+. ......+.| +|++|+||||||+.+++..... ..|+ .++|+++..
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~----~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGA----GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFN 96 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSS----CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCC----CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCC
Confidence 467999999999999988 4311100 012345666 9999999999999999842211 0122 467888777
Q ss_pred CCCHHHHHHHHHHHhcCCCCC-cccHHHHHHHHHHHhc--CCceEEEeecccCCC-----ChhhHHHHHHhccCC---C-
Q 037574 235 PRDEIRVAKAILESLKGSVSS-QVEMETVLQYINEFVQ--GKKVLLVLDDVWWNA-----CPRYWEQLMYSLKSG---S- 302 (961)
Q Consensus 235 ~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~-----~~~~~~~l~~~l~~~---~- 302 (961)
..+...++..++.+++..... ..+.+++...+.+.+. +++++||+||+|+-. +.+.+..+...+... +
T Consensus 97 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~ 176 (412)
T 1w5s_A 97 APNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDG 176 (412)
T ss_dssp CCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTS
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCC
Confidence 778899999999998764321 2345566666666664 779999999997211 124444444433321 2
Q ss_pred -CCcEEEEecCCCccccccc---ccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcC
Q 037574 303 -EGSRILVTRRGEKNGTNMT---EIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCK 378 (961)
Q Consensus 303 -~gs~ilvTtR~~~v~~~~~---~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~ 378 (961)
....||+||+...+...+. .. . ..... ..+.+.+|+.++++++|...+...... ..--.+..+.|++.|+
T Consensus 177 ~~~v~lI~~~~~~~~~~~l~~~~~~-~--~~~~~-~~i~l~~l~~~e~~~ll~~~~~~~~~~--~~~~~~~~~~i~~~~~ 250 (412)
T 1w5s_A 177 VNRIGFLLVASDVRALSYMREKIPQ-V--ESQIG-FKLHLPAYKSRELYTILEQRAELGLRD--TVWEPRHLELISDVYG 250 (412)
T ss_dssp CCBEEEEEEEEETHHHHHHHHHCHH-H--HTTCS-EEEECCCCCHHHHHHHHHHHHHHHBCT--TSCCHHHHHHHHHHHC
T ss_pred CceEEEEEEeccccHHHHHhhhcch-h--hhhcC-CeeeeCCCCHHHHHHHHHHHHHhcCCC--CCCChHHHHHHHHHHH
Confidence 3445787887665432221 00 0 00000 239999999999999997653211000 0112456788999999
Q ss_pred ------CchHHHHHHHhhcc------CC--CCHHHHHHHhhhhhcccchhhhhccCCCCcchhhhHhhhcCCChHHHHHh
Q 037574 379 ------GLPFAVKILGSLLR------FK--TSIEEWQSVLDSEIWNLDSKICKRAGVGDEYFSPLLLSYYDLSPALKKCF 444 (961)
Q Consensus 379 ------G~PLai~~~~~~l~------~~--~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf 444 (961)
|.|..+..+..... .. -+...+..+..... . ...+.-++..||++.+.++
T Consensus 251 ~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~--------------~--~~~~~~~l~~l~~~~~~~l 314 (412)
T 1w5s_A 251 EDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE--------------A--ASIQTHELEALSIHELIIL 314 (412)
T ss_dssp GGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC----------------------CCSSSSSCHHHHHHH
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh--------------c--cchHHHHHHcCCHHHHHHH
Confidence 99976655543210 11 12333333332110 0 2234446788999999999
Q ss_pred hHhccCC--CCcccChHHHHHHHHHcC--cccccccccHHHHHHHHHHHHHhCCCCcccc
Q 037574 445 LYCSIFP--KNYEIEKDRLIKLWMAQG--YLKLLESEDMEVIGEEYFANLASRSLFQDFQ 500 (961)
Q Consensus 445 l~~a~fp--~~~~i~~~~Li~~W~a~g--~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~ 500 (961)
..++.+. .+..++...+...+.... ... .... .......++++|.+.+++....
T Consensus 315 ~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 315 RLIAEATLGGMEWINAGLLRQRYEDASLTMYN-VKPR-GYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp HHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSC-CCCC-CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHHHhhcC-CCCC-CHHHHHHHHHHHHhCCCEEeec
Confidence 9888753 333566666655553211 110 0111 1234567899999999997754
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.62 E-value=7.4e-15 Score=172.68 Aligned_cols=255 Identities=18% Similarity=0.158 Sum_probs=173.6
Q ss_pred CccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcCCC
Q 037574 549 KFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRLI 628 (961)
Q Consensus 549 ~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~ 628 (961)
+++.++++++.+. .+|..+. ++|++|++++|. +. . ++. .+++|++|+|++|. +..+|. .++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~--l~-~-lp~---~l~~L~~L~Ls~N~------l~~lp~---~l~ 101 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNN--LT-S-LPA---LPPELRTLEVSGNQ------LTSLPV---LPP 101 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCC--CS-C-CCC---CCTTCCEEEECSCC------CSCCCC---CCT
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCC--CC-C-CCC---cCCCCCEEEcCCCc------CCcCCC---CCC
Confidence 5788888888884 5665554 789999999886 32 2 222 57889999999984 777877 778
Q ss_pred CcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcccccCCcCCCCCCCCCcCCceE
Q 037574 629 HLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLSYMPKGIERWSCLRTLSEFI 708 (961)
Q Consensus 629 ~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~~~p~~i~~L~~L~~L~~~~ 708 (961)
+|++|+|++|. +..+|. .+.+|++|++++|. +..+|.. +++|++|++++|++..+|..+. +|+.| .
T Consensus 102 ~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l~~l~~~~~---~L~~L---~ 167 (622)
T 3g06_A 102 GLLELSIFSNP-LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLASLPALPS---ELCKL---W 167 (622)
T ss_dssp TCCEEEECSCC-CCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSCCCCCCT---TCCEE---E
T ss_pred CCCEEECcCCc-CCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcCCCcCCccC---CCCEE---E
Confidence 99999999998 888887 67889999999887 8888865 4889999999888888876443 34433 2
Q ss_pred ecCCCCCCCCCChhhhhcccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHHHHhcCCCC
Q 037574 709 VSGGNDDKKASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAVVEGLELP 788 (961)
Q Consensus 709 ~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~ 788 (961)
+..+.+...+ ..+.+|+ .|.+.+ +.... +. ...++|+.|.++.|.... +. ..+
T Consensus 168 L~~N~l~~l~---~~~~~L~----~L~Ls~---N~l~~-l~---~~~~~L~~L~L~~N~l~~----------l~---~~~ 220 (622)
T 3g06_A 168 AYNNQLTSLP---MLPSGLQ----ELSVSD---NQLAS-LP---TLPSELYKLWAYNNRLTS----------LP---ALP 220 (622)
T ss_dssp CCSSCCSCCC---CCCTTCC----EEECCS---SCCSC-CC---CCCTTCCEEECCSSCCSS----------CC---CCC
T ss_pred CCCCCCCCCc---ccCCCCc----EEECCC---CCCCC-CC---CccchhhEEECcCCcccc----------cC---CCC
Confidence 3333322222 1122222 232222 11110 00 123678888888775431 11 123
Q ss_pred CCcCceEEeeecCccccccccccccCceEEEEeCCCCCCcCCCCCCCCccceeeeccccCceEeCccccccCCCCCCCcc
Q 037574 789 SNLESMEMFYYRGESISLMMIMLSNKLRSLTLDRCVNLKQLPGLGGLPSLESLTLRNMKRIEKVGNEFLLTDRTSSTGTA 868 (961)
Q Consensus 789 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~ 868 (961)
++|+.|++++|....++ ..+++|+.|+|++| .+..+|. .+++|+.|+|++| .++.+|..
T Consensus 221 ~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N-~L~~lp~--~~~~L~~L~Ls~N-~L~~lp~~------------- 279 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP----VLPSELKELMVSGN-RLTSLPM--LPSGLLSLSVYRN-QLTRLPES------------- 279 (622)
T ss_dssp TTCCEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS-CCCSCCGG-------------
T ss_pred CCCCEEEccCCccCcCC----CCCCcCcEEECCCC-CCCcCCc--ccccCcEEeCCCC-CCCcCCHH-------------
Confidence 68899999888765543 35688999999988 5667776 6788999999884 56666543
Q ss_pred cccCcccceeeccccc
Q 037574 869 VSAFPKLKSLVFLKMK 884 (961)
Q Consensus 869 ~~~fp~L~~L~l~~~~ 884 (961)
...+++|+.|.+.+++
T Consensus 280 l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 280 LIHLSSETTVNLEGNP 295 (622)
T ss_dssp GGGSCTTCEEECCSCC
T ss_pred HhhccccCEEEecCCC
Confidence 2467888888888764
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.62 E-value=4.3e-15 Score=170.30 Aligned_cols=219 Identities=21% Similarity=0.225 Sum_probs=118.6
Q ss_pred CCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhccc-chhhcCCCCcceEeccCCCCcccCCc-chh
Q 037574 572 KKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKV-PKQIKRLIHLRYLNLSKNNKIKKLPK-TLC 649 (961)
Q Consensus 572 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~i~~lp~-~i~ 649 (961)
++++.|++++|. +. .+.+..|.++++|++|+|++| . +..+ |..+.++++|++|+|++|. +..+|. .+.
T Consensus 75 ~~l~~L~L~~n~--i~-~~~~~~~~~l~~L~~L~Ls~n-----~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 144 (452)
T 3zyi_A 75 SNTRYLNLMENN--IQ-MIQADTFRHLHHLEVLQLGRN-----S-IRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFE 144 (452)
T ss_dssp TTCSEEECCSSC--CC-EECTTTTTTCTTCCEEECCSS-----C-CCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSS
T ss_pred CCccEEECcCCc--Cc-eECHHHcCCCCCCCEEECCCC-----c-cCCcChhhccCcccCCEEECCCCc-CCccChhhhc
Confidence 567777777665 32 334455667777777777776 3 4444 3556677777777777776 666654 366
Q ss_pred ccCCCcEeecCCCCCCccccc-ccccCCCCcEEEeCC-cccccCCcC-CCCCCCCCcCCceEecCCCCCCCCCChhhhhc
Q 037574 650 ELYNLQTLELSWCSNLRNLPQ-GMGKLINLRHVVNVG-TPLSYMPKG-IERWSCLRTLSEFIVSGGNDDKKASKLECLKS 726 (961)
Q Consensus 650 ~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~-~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~ 726 (961)
.+++|++|++++|. +..+|. .+.++++|++|+++. +.+..+|.. +..+++|+.|. ++.+.+ ..+
T Consensus 145 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~---L~~n~l-------~~~-- 211 (452)
T 3zyi_A 145 YLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN---LGMCNI-------KDM-- 211 (452)
T ss_dssp SCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEE---CTTSCC-------SSC--
T ss_pred ccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEE---CCCCcc-------ccc--
Confidence 67777777777766 555654 466677777777744 444444432 33344333332 222210 000
Q ss_pred ccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHHHHhcCCCCCCcCceEEeeecCccccc
Q 037574 727 LNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAVVEGLELPSNLESMEMFYYRGESISL 806 (961)
Q Consensus 727 L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~ 806 (961)
..+..+++|+.|+++.|.... .....+..+++|+.|+++++....+..
T Consensus 212 -----------------------~~~~~l~~L~~L~Ls~N~l~~---------~~~~~~~~l~~L~~L~L~~n~l~~~~~ 259 (452)
T 3zyi_A 212 -----------------------PNLTPLVGLEELEMSGNHFPE---------IRPGSFHGLSSLKKLWVMNSQVSLIER 259 (452)
T ss_dssp -----------------------CCCTTCTTCCEEECTTSCCSE---------ECGGGGTTCTTCCEEECTTSCCCEECT
T ss_pred -----------------------ccccccccccEEECcCCcCcc---------cCcccccCccCCCEEEeCCCcCceECH
Confidence 012334556666666554321 112233444566666666665544422
Q ss_pred cccccccCceEEEEeCCCCCCcCC--CCCCCCccceeeeccc
Q 037574 807 MMIMLSNKLRSLTLDRCVNLKQLP--GLGGLPSLESLTLRNM 846 (961)
Q Consensus 807 ~~~~~l~~L~~L~L~~~~~~~~l~--~l~~lp~L~~L~L~~~ 846 (961)
.....+++|+.|+|++| .+..+| .+..+++|+.|+|+++
T Consensus 260 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 260 NAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp TTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSS
T ss_pred HHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCC
Confidence 22224566666666666 344444 2455666666666653
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.61 E-value=1.1e-15 Score=169.33 Aligned_cols=255 Identities=17% Similarity=0.142 Sum_probs=180.9
Q ss_pred cCCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchh-h
Q 037574 546 SHEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQ-I 624 (961)
Q Consensus 546 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~-i 624 (961)
..+++++|+++++.+....+..+..+++|++|++.+|. +. .+.+..|.++++|++|+|++|. +..+|.. +
T Consensus 50 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~--l~-~~~~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~ 120 (353)
T 2z80_A 50 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG--IN-TIEEDSFSSLGSLEHLDLSYNY------LSNLSSSWF 120 (353)
T ss_dssp CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC--CC-EECTTTTTTCTTCCEEECCSSC------CSSCCHHHH
T ss_pred ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc--cC-ccCHhhcCCCCCCCEEECCCCc------CCcCCHhHh
Confidence 45689999999998854444578999999999999986 43 4456678999999999999994 7777766 8
Q ss_pred cCCCCcceEeccCCCCcccCCc--chhccCCCcEeecCCCCCCcccc-cccccCCCCcEEEeCCcccccC-CcCCCCCCC
Q 037574 625 KRLIHLRYLNLSKNNKIKKLPK--TLCELYNLQTLELSWCSNLRNLP-QGMGKLINLRHVVNVGTPLSYM-PKGIERWSC 700 (961)
Q Consensus 625 ~~l~~Lr~L~L~~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~l~~~-p~~i~~L~~ 700 (961)
+++++|++|+|++|. ++.+|. .+..+++|++|++++|..+..+| ..+..+++|++|++++|.+..+ |..++.+++
T Consensus 121 ~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 199 (353)
T 2z80_A 121 KPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQN 199 (353)
T ss_dssp TTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred CCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhcccc
Confidence 999999999999998 889987 78999999999999986677775 5789999999999998888766 667887777
Q ss_pred CCcCCceEecCCCCCCCCC-ChhhhhcccccCCceeEcCC--CCCChhhhHhhccccccccCceeEEecCCCCcCCCccc
Q 037574 701 LRTLSEFIVSGGNDDKKAS-KLECLKSLNHLQGSLNIKGL--GNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKED 777 (961)
Q Consensus 701 L~~L~~~~~~~~~~~~~~~-~l~~L~~L~~L~~~L~i~~l--~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 777 (961)
|++|.. ..+.....+. .+..+.+|+ .+.+.+. ....... .........++.+.+..+.... ..
T Consensus 200 L~~L~l---~~n~l~~~~~~~~~~~~~L~----~L~L~~n~l~~~~~~~--l~~~~~~~~l~~l~L~~~~l~~-----~~ 265 (353)
T 2z80_A 200 VSHLIL---HMKQHILLLEIFVDVTSSVE----CLELRDTDLDTFHFSE--LSTGETNSLIKKFTFRNVKITD-----ES 265 (353)
T ss_dssp EEEEEE---ECSCSTTHHHHHHHHTTTEE----EEEEESCBCTTCCCC--------CCCCCCEEEEESCBCCH-----HH
T ss_pred CCeecC---CCCccccchhhhhhhccccc----EEECCCCccccccccc--cccccccchhhccccccccccC-----cc
Confidence 777754 3333211111 111233444 3444332 1111110 1112345667788888765431 11
Q ss_pred hHHHHhcCCCCCCcCceEEeeecCccccccccccccCceEEEEeCCC
Q 037574 778 DEAVVEGLELPSNLESMEMFYYRGESISLMMIMLSNKLRSLTLDRCV 824 (961)
Q Consensus 778 ~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 824 (961)
...+.+.+..+++|+.|+++++....++......+++|++|+|++|+
T Consensus 266 l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 266 LFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 22345556677899999999998877633222378999999999984
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.61 E-value=1.1e-16 Score=174.19 Aligned_cols=273 Identities=14% Similarity=0.150 Sum_probs=161.1
Q ss_pred hhhhccCCcccEEEccCCChhhhhhhccc-chhhcCCCCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCccccc
Q 037574 592 SKVFDQLTCLRTLELSNHDNVLCKVIKKV-PKQIKRLIHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQ 670 (961)
Q Consensus 592 ~~~~~~l~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~ 670 (961)
...+..+++|++|+|++| . +..+ |..++.+++|++|+|++|. +..++. +..+++|++|++++|. +..+|
T Consensus 27 ~~~~~~~~~L~~L~L~~n-----~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~- 96 (317)
T 3o53_A 27 ASLRQSAWNVKELDLSGN-----P-LSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-VQELL- 96 (317)
T ss_dssp HHHHTTGGGCSEEECTTS-----C-CCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCSSE-EEEEE-
T ss_pred HHHhccCCCCCEEECcCC-----c-cCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcCCc-ccccc-
Confidence 344556667777777777 3 4444 3567777777777777777 665554 7777777777777766 55554
Q ss_pred ccccCCCCcEEEeCCcccccCCcCCCCCCCCCcCCceEecCCCCCCCCCChhhhhcccccCCceeEcCCCCCChhhhHhh
Q 037574 671 GMGKLINLRHVVNVGTPLSYMPKGIERWSCLRTLSEFIVSGGNDDKKASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKA 750 (961)
Q Consensus 671 ~i~~L~~L~~L~l~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~ 750 (961)
..++|++|+++.|.+..++... +++|++|. +..+... .....
T Consensus 97 ---~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~---l~~N~l~------------------------------~~~~~ 138 (317)
T 3o53_A 97 ---VGPSIETLHAANNNISRVSCSR--GQGKKNIY---LANNKIT------------------------------MLRDL 138 (317)
T ss_dssp ---ECTTCCEEECCSSCCSEEEECC--CSSCEEEE---CCSSCCC------------------------------SGGGB
T ss_pred ---CCCCcCEEECCCCccCCcCccc--cCCCCEEE---CCCCCCC------------------------------Cccch
Confidence 2367777777777666554321 33333332 2222210 01111
Q ss_pred ccccccccCceeEEecCCCCcCCCccchHHHHhcC-CCCCCcCceEEeeecCccccccccccccCceEEEEeCCCCCCcC
Q 037574 751 ELSKREKLLALGISFDRDDEEGRKKEDDEAVVEGL-ELPSNLESMEMFYYRGESISLMMIMLSNKLRSLTLDRCVNLKQL 829 (961)
Q Consensus 751 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l 829 (961)
.+..+++|+.|+++++.... .....+ ..+++|+.|+++++....++... .+++|+.|+|++|. +..+
T Consensus 139 ~~~~l~~L~~L~Ls~N~l~~---------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~l~~L~~L~Ls~N~-l~~l 206 (317)
T 3o53_A 139 DEGCRSRVQYLDLKLNEIDT---------VNFAELAASSDTLEHLNLQYNFIYDVKGQV--VFAKLKTLDLSSNK-LAFM 206 (317)
T ss_dssp CTGGGSSEEEEECTTSCCCE---------EEGGGGGGGTTTCCEEECTTSCCCEEECCC--CCTTCCEEECCSSC-CCEE
T ss_pred hhhccCCCCEEECCCCCCCc---------ccHHHHhhccCcCCEEECCCCcCccccccc--ccccCCEEECCCCc-CCcc
Confidence 23344566666666554321 001111 12357777777777665552222 47888888888884 4444
Q ss_pred C-CCCCCCccceeeeccccCceEeCccccccCCCCCCCcccccCcccceeeccccccccccccccccCccccccccccee
Q 037574 830 P-GLGGLPSLESLTLRNMKRIEKVGNEFLLTDRTSSTGTAVSAFPKLKSLVFLKMKAWREWKYKTKRGKHYKIMPCLCSL 908 (961)
Q Consensus 830 ~-~l~~lp~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L 908 (961)
| .+..+++|+.|++++ +.++.++..+ ..+++|+.|++.+++-..... +.....+++|+.|
T Consensus 207 ~~~~~~l~~L~~L~L~~-N~l~~l~~~~-------------~~l~~L~~L~l~~N~~~~~~~-----~~~~~~~~~L~~l 267 (317)
T 3o53_A 207 GPEFQSAAGVTWISLRN-NKLVLIEKAL-------------RFSQNLEHFDLRGNGFHCGTL-----RDFFSKNQRVQTV 267 (317)
T ss_dssp CGGGGGGTTCSEEECTT-SCCCEECTTC-------------CCCTTCCEEECTTCCCBHHHH-----HHHHHTCHHHHHH
T ss_pred hhhhcccCcccEEECcC-CcccchhhHh-------------hcCCCCCEEEccCCCccCcCH-----HHHHhccccceEE
Confidence 3 577788889999988 4577776542 457888888888764321211 2234478899999
Q ss_pred cccccccCcCCCCCCCCC-CCCeEEEccccchhhhh
Q 037574 909 TIGYCNELEMLPAEHFPD-TLKDLKIISCSKLEKSY 943 (961)
Q Consensus 909 ~i~~C~~L~~lp~~~l~~-sL~~L~i~~c~~l~~~~ 943 (961)
.+..|+.++..+...... .+....-..|..+...+
T Consensus 268 ~l~~~~~l~~~~~~~~~~~~~~~~~~~cc~~l~~~~ 303 (317)
T 3o53_A 268 AKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPF 303 (317)
T ss_dssp HHHHHHHHHSSSSCCCSSTTCEEETTEEEBCCTTTH
T ss_pred ECCCchhccCCchhccCCCceecccceeeccCChhH
Confidence 999888887654432211 12232234577766655
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.61 E-value=6.1e-15 Score=168.41 Aligned_cols=237 Identities=22% Similarity=0.261 Sum_probs=129.5
Q ss_pred cEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhccc-chhhcCCCC
Q 037574 551 PHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKV-PKQIKRLIH 629 (961)
Q Consensus 551 r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l~~ 629 (961)
+.+......+ ..+|..+. ++++.|++++|. +. .+.+..|.++++|++|+|++| . +..+ +..+.++++
T Consensus 46 ~~v~c~~~~l-~~iP~~~~--~~l~~L~L~~n~--i~-~~~~~~~~~l~~L~~L~Ls~n-----~-i~~i~~~~~~~l~~ 113 (440)
T 3zyj_A 46 SKVICVRKNL-REVPDGIS--TNTRLLNLHENQ--IQ-IIKVNSFKHLRHLEILQLSRN-----H-IRTIEIGAFNGLAN 113 (440)
T ss_dssp CEEECCSCCC-SSCCSCCC--TTCSEEECCSCC--CC-EECTTTTSSCSSCCEEECCSS-----C-CCEECGGGGTTCSS
T ss_pred CEEEeCCCCc-CcCCCCCC--CCCcEEEccCCc--CC-eeCHHHhhCCCCCCEEECCCC-----c-CCccChhhccCCcc
Confidence 3444444444 34454332 567777777765 32 334455677777777777777 3 4444 355677777
Q ss_pred cceEeccCCCCcccCCc-chhccCCCcEeecCCCCCCccccc-ccccCCCCcEEEeCC-cccccCCc-CCCCCCCCCcCC
Q 037574 630 LRYLNLSKNNKIKKLPK-TLCELYNLQTLELSWCSNLRNLPQ-GMGKLINLRHVVNVG-TPLSYMPK-GIERWSCLRTLS 705 (961)
Q Consensus 630 Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~-~~l~~~p~-~i~~L~~L~~L~ 705 (961)
|++|+|++|. ++.+|. .+..+++|++|++++|. +..+|. .+..+++|++|+++. +.+..++. .+..+++|+.|.
T Consensus 114 L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 114 LNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191 (440)
T ss_dssp CCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE
T ss_pred CCEEECCCCc-CCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeec
Confidence 7777777776 666664 46777777777777766 556654 466677777777754 44444443 244444444432
Q ss_pred ceEecCCCCCCCCCChhhhhcccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHHHHhcC
Q 037574 706 EFIVSGGNDDKKASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAVVEGL 785 (961)
Q Consensus 706 ~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l 785 (961)
+..+.+ ..+ ..+..+++|+.|+|+.|.... .....+
T Consensus 192 ---L~~n~l-------~~~-------------------------~~~~~l~~L~~L~Ls~N~l~~---------~~~~~~ 227 (440)
T 3zyj_A 192 ---LAMCNL-------REI-------------------------PNLTPLIKLDELDLSGNHLSA---------IRPGSF 227 (440)
T ss_dssp ---CTTSCC-------SSC-------------------------CCCTTCSSCCEEECTTSCCCE---------ECTTTT
T ss_pred ---CCCCcC-------ccc-------------------------cccCCCcccCEEECCCCccCc---------cChhhh
Confidence 222210 000 012344566666666654321 012233
Q ss_pred CCCCCcCceEEeeecCccccccccccccCceEEEEeCCCCCCcCC--CCCCCCccceeeeccc
Q 037574 786 ELPSNLESMEMFYYRGESISLMMIMLSNKLRSLTLDRCVNLKQLP--GLGGLPSLESLTLRNM 846 (961)
Q Consensus 786 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~--~l~~lp~L~~L~L~~~ 846 (961)
..+++|+.|+++++....+.......+++|+.|+|++| .+..+| .+..+++|+.|+|+++
T Consensus 228 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp TTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSS
T ss_pred ccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCC
Confidence 44466666666666555442222225666666666666 344444 2455666666666653
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.61 E-value=2.1e-15 Score=172.19 Aligned_cols=150 Identities=22% Similarity=0.249 Sum_probs=125.9
Q ss_pred CcCCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccch-h
Q 037574 545 SSHEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPK-Q 623 (961)
Q Consensus 545 ~~~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~-~ 623 (961)
..+.+++.|.++.|.+....+..+.++++|++|++++|. +. .+.+..|.++++|++|+|++|. +..+|. .
T Consensus 61 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~--i~-~i~~~~~~~l~~L~~L~L~~n~------l~~~~~~~ 131 (440)
T 3zyj_A 61 GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH--IR-TIEIGAFNGLANLNTLELFDNR------LTTIPNGA 131 (440)
T ss_dssp CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC--CC-EECGGGGTTCSSCCEEECCSSC------CSSCCTTT
T ss_pred CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc--CC-ccChhhccCCccCCEEECCCCc------CCeeCHhH
Confidence 346789999999999865556789999999999999987 43 4456779999999999999994 777765 6
Q ss_pred hcCCCCcceEeccCCCCcccCCc-chhccCCCcEeecCCCCCCccccc-ccccCCCCcEEEeCCcccccCCcCCCCCCCC
Q 037574 624 IKRLIHLRYLNLSKNNKIKKLPK-TLCELYNLQTLELSWCSNLRNLPQ-GMGKLINLRHVVNVGTPLSYMPKGIERWSCL 701 (961)
Q Consensus 624 i~~l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~l~~~p~~i~~L~~L 701 (961)
+..+++|++|+|++|. +..+|. .+.++++|++|++++|+.+..+|. .+..+++|++|++++|++..+|. +..+++|
T Consensus 132 ~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L 209 (440)
T 3zyj_A 132 FVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKL 209 (440)
T ss_dssp SCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSC
T ss_pred hhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCccc
Confidence 8999999999999999 888774 789999999999999888888886 58889999999999999988874 5555555
Q ss_pred CcCC
Q 037574 702 RTLS 705 (961)
Q Consensus 702 ~~L~ 705 (961)
+.|.
T Consensus 210 ~~L~ 213 (440)
T 3zyj_A 210 DELD 213 (440)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 5554
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.61 E-value=1.3e-14 Score=170.62 Aligned_cols=256 Identities=20% Similarity=0.192 Sum_probs=152.9
Q ss_pred CCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcccCCcchhcc
Q 037574 572 KKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKKLPKTLCEL 651 (961)
Q Consensus 572 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L 651 (961)
.++++|++.++. +. . +|..+. ++|++|+|++|. +..+|. .+++|++|+|++|. ++.+|. .+
T Consensus 40 ~~l~~L~ls~n~--L~-~-lp~~l~--~~L~~L~L~~N~------l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l 100 (622)
T 3g06_A 40 NGNAVLNVGESG--LT-T-LPDCLP--AHITTLVIPDNN------LTSLPA---LPPELRTLEVSGNQ-LTSLPV---LP 100 (622)
T ss_dssp HCCCEEECCSSC--CS-C-CCSCCC--TTCSEEEECSCC------CSCCCC---CCTTCCEEEECSCC-CSCCCC---CC
T ss_pred CCCcEEEecCCC--cC-c-cChhhC--CCCcEEEecCCC------CCCCCC---cCCCCCEEEcCCCc-CCcCCC---CC
Confidence 368888888876 32 2 233222 789999999983 777777 57889999999998 888887 67
Q ss_pred CCCcEeecCCCCCCcccccccccCCCCcEEEeCCcccccCCcCCCCCCCCCcCCceEecCCCCCCCCCChhhhhcccccC
Q 037574 652 YNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLSYMPKGIERWSCLRTLSEFIVSGGNDDKKASKLECLKSLNHLQ 731 (961)
Q Consensus 652 ~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~ 731 (961)
++|++|++++|. +..+|. .+++|++|++++|++..+|..+ ++|++|. ++.+.+...+..+ .+|.
T Consensus 101 ~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N~l~~lp~~l---~~L~~L~---Ls~N~l~~l~~~~---~~L~--- 164 (622)
T 3g06_A 101 PGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGNQLTSLPVLP---PGLQELS---VSDNQLASLPALP---SELC--- 164 (622)
T ss_dssp TTCCEEEECSCC-CCCCCC---CCTTCCEEECCSSCCSCCCCCC---TTCCEEE---CCSSCCSCCCCCC---TTCC---
T ss_pred CCCCEEECcCCc-CCCCCC---CCCCcCEEECCCCCCCcCCCCC---CCCCEEE---CcCCcCCCcCCcc---CCCC---
Confidence 899999999887 888887 5788999999888888888753 4555553 3444322222221 2222
Q ss_pred CceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHHHHhcCCCCCCcCceEEeeecCcccccccccc
Q 037574 732 GSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAVVEGLELPSNLESMEMFYYRGESISLMMIML 811 (961)
Q Consensus 732 ~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 811 (961)
.|.+.+ +.... ++ ..+++|+.|+++.|.... +. ..+++|+.|.++++....++. .
T Consensus 165 -~L~L~~---N~l~~-l~---~~~~~L~~L~Ls~N~l~~----------l~---~~~~~L~~L~L~~N~l~~l~~----~ 219 (622)
T 3g06_A 165 -KLWAYN---NQLTS-LP---MLPSGLQELSVSDNQLAS----------LP---TLPSELYKLWAYNNRLTSLPA----L 219 (622)
T ss_dssp -EEECCS---SCCSC-CC---CCCTTCCEEECCSSCCSC----------CC---CCCTTCCEEECCSSCCSSCCC----C
T ss_pred -EEECCC---CCCCC-Cc---ccCCCCcEEECCCCCCCC----------CC---CccchhhEEECcCCcccccCC----C
Confidence 222211 10000 00 234566777776664321 00 113566777766665544421 2
Q ss_pred ccCceEEEEeCCCCCCcCCCCCCCCccceeeeccccCceEeCccccccCCCCCCCcccccCcccceeecccccccccccc
Q 037574 812 SNKLRSLTLDRCVNLKQLPGLGGLPSLESLTLRNMKRIEKVGNEFLLTDRTSSTGTAVSAFPKLKSLVFLKMKAWREWKY 891 (961)
Q Consensus 812 l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~ 891 (961)
+++|+.|+|++| .+..+| ..+++|+.|+|+++ .++.+|. .+++|+.|.+.++ ++..+.
T Consensus 220 ~~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N-~L~~lp~----------------~~~~L~~L~Ls~N-~L~~lp- 277 (622)
T 3g06_A 220 PSGLKELIVSGN-RLTSLP--VLPSELKELMVSGN-RLTSLPM----------------LPSGLLSLSVYRN-QLTRLP- 277 (622)
T ss_dssp CTTCCEEECCSS-CCSCCC--CCCTTCCEEECCSS-CCSCCCC----------------CCTTCCEEECCSS-CCCSCC-
T ss_pred CCCCCEEEccCC-ccCcCC--CCCCcCcEEECCCC-CCCcCCc----------------ccccCcEEeCCCC-CCCcCC-
Confidence 456777777666 444555 44566777777663 3443322 3456666766665 344222
Q ss_pred ccccCcccccccccceecccccc
Q 037574 892 KTKRGKHYKIMPCLCSLTIGYCN 914 (961)
Q Consensus 892 ~~~~~~~~~~~p~L~~L~i~~C~ 914 (961)
.....+++|+.|++++|+
T Consensus 278 -----~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 278 -----ESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp -----GGGGGSCTTCEEECCSCC
T ss_pred -----HHHhhccccCEEEecCCC
Confidence 234466677777776654
No 66
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.60 E-value=3.9e-15 Score=170.69 Aligned_cols=150 Identities=21% Similarity=0.247 Sum_probs=125.7
Q ss_pred CcCCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccch-h
Q 037574 545 SSHEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPK-Q 623 (961)
Q Consensus 545 ~~~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~-~ 623 (961)
..+.+++.|++++|.+....+..+..+++|+.|++++|. +. .+.+..|.++++|++|+|++| . +..+|. .
T Consensus 72 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~--i~-~~~~~~~~~l~~L~~L~L~~n-----~-l~~~~~~~ 142 (452)
T 3zyi_A 72 GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS--IR-QIEVGAFNGLASLNTLELFDN-----W-LTVIPSGA 142 (452)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC--CC-EECTTTTTTCTTCCEEECCSS-----C-CSBCCTTT
T ss_pred CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc--cC-CcChhhccCcccCCEEECCCC-----c-CCccChhh
Confidence 356789999999999876667789999999999999986 44 445677899999999999999 4 777765 4
Q ss_pred hcCCCCcceEeccCCCCcccCCc-chhccCCCcEeecCCCCCCccccc-ccccCCCCcEEEeCCcccccCCcCCCCCCCC
Q 037574 624 IKRLIHLRYLNLSKNNKIKKLPK-TLCELYNLQTLELSWCSNLRNLPQ-GMGKLINLRHVVNVGTPLSYMPKGIERWSCL 701 (961)
Q Consensus 624 i~~l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~l~~~p~~i~~L~~L 701 (961)
+..+++|++|+|++|. +..+|. .+.++++|++|++++|+.+..+|. .+..+++|++|++++|++..+|. +..+++|
T Consensus 143 ~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L 220 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGL 220 (452)
T ss_dssp SSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTC
T ss_pred hcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-ccccccc
Confidence 8899999999999999 888774 789999999999999888999886 48889999999999999888763 5555555
Q ss_pred CcCC
Q 037574 702 RTLS 705 (961)
Q Consensus 702 ~~L~ 705 (961)
+.|.
T Consensus 221 ~~L~ 224 (452)
T 3zyi_A 221 EELE 224 (452)
T ss_dssp CEEE
T ss_pred cEEE
Confidence 5543
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.58 E-value=3.4e-15 Score=159.87 Aligned_cols=141 Identities=21% Similarity=0.265 Sum_probs=87.2
Q ss_pred cEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhccc-chhhcCCCC
Q 037574 551 PHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKV-PKQIKRLIH 629 (961)
Q Consensus 551 r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l~~ 629 (961)
+.++...+.+ ..+|.. ..++|+.|.+.++. +. .+.+..|..+++|++|+|++| . +..+ |..++.+++
T Consensus 14 ~~~~c~~~~l-~~ip~~--~~~~l~~L~l~~n~--i~-~~~~~~~~~~~~L~~L~l~~n-----~-l~~~~~~~~~~l~~ 81 (285)
T 1ozn_A 14 VTTSCPQQGL-QAVPVG--IPAASQRIFLHGNR--IS-HVPAASFRACRNLTILWLHSN-----V-LARIDAAAFTGLAL 81 (285)
T ss_dssp CEEECCSSCC-SSCCTT--CCTTCSEEECTTSC--CC-EECTTTTTTCTTCCEEECCSS-----C-CCEECTTTTTTCTT
T ss_pred eEEEcCcCCc-ccCCcC--CCCCceEEEeeCCc--CC-ccCHHHcccCCCCCEEECCCC-----c-cceeCHhhcCCccC
Confidence 4444444444 333432 24577777777765 33 334455677777777777777 3 4444 566777777
Q ss_pred cceEeccCCCCcccC-CcchhccCCCcEeecCCCCCCccc-ccccccCCCCcEEEeCCcccccCCcC-CCCCCCCCcC
Q 037574 630 LRYLNLSKNNKIKKL-PKTLCELYNLQTLELSWCSNLRNL-PQGMGKLINLRHVVNVGTPLSYMPKG-IERWSCLRTL 704 (961)
Q Consensus 630 Lr~L~L~~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~~~l~~~p~~-i~~L~~L~~L 704 (961)
|++|+|++|..+..+ |..+..+++|++|++++|. +..+ |..+..+++|++|++++|.+..+|.. ++.+++|+.|
T Consensus 82 L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 158 (285)
T 1ozn_A 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158 (285)
T ss_dssp CCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEE
Confidence 777777777545555 5667777777777777776 4444 45567777777777777766665543 4444444444
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.56 E-value=1.6e-15 Score=164.89 Aligned_cols=266 Identities=15% Similarity=0.168 Sum_probs=167.5
Q ss_pred ccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcccCCcc
Q 037574 568 VYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKKLPKT 647 (961)
Q Consensus 568 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~ 647 (961)
+..+++|+.|++++|. +. ...+..|..+++|++|+|++|. +...+. +..+++|++|+|++|. ++.+|.
T Consensus 30 ~~~~~~L~~L~L~~n~--l~-~~~~~~~~~l~~L~~L~Ls~n~------l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~~- 97 (317)
T 3o53_A 30 RQSAWNVKELDLSGNP--LS-QISAADLAPFTKLELLNLSSNV------LYETLD-LESLSTLRTLDLNNNY-VQELLV- 97 (317)
T ss_dssp HTTGGGCSEEECTTSC--CC-CCCHHHHTTCTTCCEEECTTSC------CEEEEE-ETTCTTCCEEECCSSE-EEEEEE-
T ss_pred hccCCCCCEEECcCCc--cC-cCCHHHhhCCCcCCEEECCCCc------CCcchh-hhhcCCCCEEECcCCc-cccccC-
Confidence 3455678888888775 33 3355667888888888888873 555544 7788888888888887 766653
Q ss_pred hhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcccccCCc-CCCCCCCCCcCCceEecCCCCCCCCCChhhhhc
Q 037574 648 LCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLSYMPK-GIERWSCLRTLSEFIVSGGNDDKKASKLECLKS 726 (961)
Q Consensus 648 i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~ 726 (961)
+++|++|++++|. +..+|.. .+++|++|++++|.+..++. .++.+++|+.|. ++.+... .
T Consensus 98 ---~~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~---Ls~N~l~-------~--- 158 (317)
T 3o53_A 98 ---GPSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD---LKLNEID-------T--- 158 (317)
T ss_dssp ---CTTCCEEECCSSC-CSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEE---CTTSCCC-------E---
T ss_pred ---CCCcCEEECCCCc-cCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEE---CCCCCCC-------c---
Confidence 4788888888876 6666533 36778888888877776644 344455555443 2222100 0
Q ss_pred ccccCCceeEcCCCCCChhhhHhhcc-ccccccCceeEEecCCCCcCCCccchHHHHhcCCCCCCcCceEEeeecCccc-
Q 037574 727 LNHLQGSLNIKGLGNVDKDEIFKAEL-SKREKLLALGISFDRDDEEGRKKEDDEAVVEGLELPSNLESMEMFYYRGESI- 804 (961)
Q Consensus 727 L~~L~~~L~i~~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~- 804 (961)
.....+ ..+++|+.|+++++.... ......+++|+.|+++++....+
T Consensus 159 --------------------~~~~~~~~~l~~L~~L~L~~N~l~~-----------~~~~~~l~~L~~L~Ls~N~l~~l~ 207 (317)
T 3o53_A 159 --------------------VNFAELAASSDTLEHLNLQYNFIYD-----------VKGQVVFAKLKTLDLSSNKLAFMG 207 (317)
T ss_dssp --------------------EEGGGGGGGTTTCCEEECTTSCCCE-----------EECCCCCTTCCEEECCSSCCCEEC
T ss_pred --------------------ccHHHHhhccCcCCEEECCCCcCcc-----------cccccccccCCEEECCCCcCCcch
Confidence 000111 235677777777775431 12223467899999998887766
Q ss_pred cccccccccCceEEEEeCCCCCCcCC-CCCCCCccceeeeccccCce-EeCccccccCCCCCCCcccccCcccceeeccc
Q 037574 805 SLMMIMLSNKLRSLTLDRCVNLKQLP-GLGGLPSLESLTLRNMKRIE-KVGNEFLLTDRTSSTGTAVSAFPKLKSLVFLK 882 (961)
Q Consensus 805 ~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~l~-~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~ 882 (961)
+.+ ..+++|+.|+|++| .+..+| .+..+++|+.|++++++ +. .....+ ...+++|+.|.+.+
T Consensus 208 ~~~--~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~-~~~~~~~~~------------~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 208 PEF--QSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG-FHCGTLRDF------------FSKNQRVQTVAKQT 271 (317)
T ss_dssp GGG--GGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC-CBHHHHHHH------------HHTCHHHHHHHHHH
T ss_pred hhh--cccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCC-ccCcCHHHH------------HhccccceEEECCC
Confidence 333 36899999999998 455666 57889999999999854 33 111111 24678888888887
Q ss_pred cccccccccccccCcccccccccceecccccccCc
Q 037574 883 MKAWREWKYKTKRGKHYKIMPCLCSLTIGYCNELE 917 (961)
Q Consensus 883 ~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~C~~L~ 917 (961)
++.++.... . ....+.+....-..|..+.
T Consensus 272 ~~~l~~~~~-----~-~~~~~~~~~~~~~cc~~l~ 300 (317)
T 3o53_A 272 VKKLTGQNE-----E-ECTVPTLGHYGAYCCEDLP 300 (317)
T ss_dssp HHHHHSSSS-----C-CCSSTTCEEETTEEEBCCT
T ss_pred chhccCCch-----h-ccCCCceecccceeeccCC
Confidence 766654432 1 1133444444444565554
No 69
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.56 E-value=9e-15 Score=158.36 Aligned_cols=229 Identities=15% Similarity=0.088 Sum_probs=163.8
Q ss_pred cCCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhc
Q 037574 546 SHEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIK 625 (961)
Q Consensus 546 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~ 625 (961)
.++++++|.+.++.+....+..+..+++|++|++.++.-... ...+..+..+++|++|+|++|. +..+|..+.
T Consensus 26 ~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~L~~L~Ls~n~------i~~l~~~~~ 98 (306)
T 2z66_A 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK-GCCSQSDFGTTSLKYLDLSFNG------VITMSSNFL 98 (306)
T ss_dssp CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEE-EEEEHHHHSCSCCCEEECCSCS------EEEEEEEEE
T ss_pred CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcc-cCcccccccccccCEEECCCCc------cccChhhcC
Confidence 457899999999998543334578999999999999862111 1123456689999999999994 788998899
Q ss_pred CCCCcceEeccCCCCcccCCc--chhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCccccc--CCcCCCCCCCC
Q 037574 626 RLIHLRYLNLSKNNKIKKLPK--TLCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLSY--MPKGIERWSCL 701 (961)
Q Consensus 626 ~l~~Lr~L~L~~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~~--~p~~i~~L~~L 701 (961)
.+++|++|++++|. +..+|. .+..+++|++|++++|......|..+..+++|++|++++|.+.. +|..+..+++|
T Consensus 99 ~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 177 (306)
T 2z66_A 99 GLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177 (306)
T ss_dssp TCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred CCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC
Confidence 99999999999998 888774 78999999999999998434455668899999999999998875 67777777777
Q ss_pred CcCCceEecCCCCCCCCCChhhhhcccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHHH
Q 037574 702 RTLSEFIVSGGNDDKKASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAV 781 (961)
Q Consensus 702 ~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 781 (961)
+.|.. +.+.... .....+..+++|+.|+++++..... .
T Consensus 178 ~~L~L---s~n~l~~------------------------------~~~~~~~~l~~L~~L~L~~N~l~~~---------~ 215 (306)
T 2z66_A 178 TFLDL---SQCQLEQ------------------------------LSPTAFNSLSSLQVLNMSHNNFFSL---------D 215 (306)
T ss_dssp CEEEC---TTSCCCE------------------------------ECTTTTTTCTTCCEEECTTSCCSBC---------C
T ss_pred CEEEC---CCCCcCC------------------------------cCHHHhcCCCCCCEEECCCCccCcc---------C
Confidence 76643 3322110 0012244556777777777654310 0
Q ss_pred HhcCCCCCCcCceEEeeecCccccccccccc-cCceEEEEeCCC
Q 037574 782 VEGLELPSNLESMEMFYYRGESISLMMIMLS-NKLRSLTLDRCV 824 (961)
Q Consensus 782 l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~L~~~~ 824 (961)
...+..+++|+.|+++++............+ ++|+.|+|++|.
T Consensus 216 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 1123445788888888887665521111245 489999999884
No 70
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.56 E-value=7.2e-16 Score=183.78 Aligned_cols=153 Identities=14% Similarity=0.027 Sum_probs=77.7
Q ss_pred CccEEEEEeccCC--CCCcccccCCCCccEEEeccCCCccc---cccchhhhccCCcccEEEccCCChhhhhhhcccchh
Q 037574 549 KFPHLMITFESDQ--GAFPNSVYNQKKLRSLGVEHGGGFMN---GIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQ 623 (961)
Q Consensus 549 ~~r~l~l~~~~~~--~~~~~~~~~~~~Lr~L~l~~~~~~~~---~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~ 623 (961)
++++|.+..+... ..++.....+++|++|++.+|. +. ..+++..+..+++|++|+|+++..-. .....++..
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~--~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~-~~~~~l~~~ 215 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS--FSEKDGKWLHELAQHNTSLEVLNFYMTEFAK-ISPKDLETI 215 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE--EECCCSHHHHHHHHHCCCCCEEECTTCCCSS-CCHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccc--ccCcchhHHHHHHhcCCCccEEEeeccCCCc-cCHHHHHHH
Confidence 3666666655410 0111222356667777766654 11 01133445566667777776663000 001234444
Q ss_pred hcCCCCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCC---cccccccccCCCCcEEEeCCcccccCCcCCCCCCC
Q 037574 624 IKRLIHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNL---RNLPQGMGKLINLRHVVNVGTPLSYMPKGIERWSC 700 (961)
Q Consensus 624 i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l---~~lP~~i~~L~~L~~L~l~~~~l~~~p~~i~~L~~ 700 (961)
+.++++|++|+|++|. +..+|..+.++++|+.|+++.+... ...+..+..+++|++|.+..+....+|..+..+++
T Consensus 216 ~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~ 294 (592)
T 3ogk_B 216 ARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQ 294 (592)
T ss_dssp HHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGG
T ss_pred HhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCC
Confidence 5566667777776666 5666666666666666666643222 12334455556666666644433444444444445
Q ss_pred CCcCC
Q 037574 701 LRTLS 705 (961)
Q Consensus 701 L~~L~ 705 (961)
|+.|.
T Consensus 295 L~~L~ 299 (592)
T 3ogk_B 295 IRKLD 299 (592)
T ss_dssp CCEEE
T ss_pred CcEEe
Confidence 54443
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.56 E-value=1.3e-16 Score=190.33 Aligned_cols=156 Identities=17% Similarity=0.128 Sum_probs=102.9
Q ss_pred CCCccEEEEEeccCCCCCccccc-CCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhc
Q 037574 547 HEKFPHLMITFESDQGAFPNSVY-NQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIK 625 (961)
Q Consensus 547 ~~~~r~l~l~~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~ 625 (961)
.+++++|.+.++.+....+..+. .+++|++|.+.+|..... ..++..+.++++|++|+|++|. +.......++....
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST-DGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPD 181 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH-HHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCT
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH-HHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhh
Confidence 45789999998876533333443 688999999998842221 2245556789999999999983 10001122344445
Q ss_pred CCCCcceEeccCCC-Cc--ccCCcchhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcc-------cccCCcCC
Q 037574 626 RLIHLRYLNLSKNN-KI--KKLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTP-------LSYMPKGI 695 (961)
Q Consensus 626 ~l~~Lr~L~L~~~~-~i--~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~-------l~~~p~~i 695 (961)
.+++|++|+|++|. .+ ..++..+.++++|++|++++|..+..+|..+..+++|++|.++.+. +..++..+
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 77899999999885 11 1233334567999999999997677788888889999999864332 22333344
Q ss_pred CCCCCCCcC
Q 037574 696 ERWSCLRTL 704 (961)
Q Consensus 696 ~~L~~L~~L 704 (961)
.++++|+.|
T Consensus 262 ~~~~~L~~L 270 (594)
T 2p1m_B 262 SGCKELRCL 270 (594)
T ss_dssp HTCTTCCEE
T ss_pred hcCCCcccc
Confidence 555555555
No 72
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.56 E-value=9.7e-14 Score=153.86 Aligned_cols=301 Identities=11% Similarity=0.098 Sum_probs=174.4
Q ss_pred CCCCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCC----
Q 037574 160 IDPLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCP---- 235 (961)
Q Consensus 160 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~---- 235 (961)
..+..|+||+++++.+.+ +. . +++.|+|++|+|||||++.+++. ... ..+|+++...
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~-----------~--~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~ 70 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LR-----------A--PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERN 70 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TC-----------S--SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCS
T ss_pred CCHHHhcChHHHHHHHHH-hc-----------C--CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhcccc
Confidence 345679999999999998 63 3 58999999999999999999873 322 2578887642
Q ss_pred -CCHHHHHHHHHHHhcC-------------C-------C-C--------CcccHHHHHHHHHHHhcCCceEEEeecccCC
Q 037574 236 -RDEIRVAKAILESLKG-------------S-------V-S--------SQVEMETVLQYINEFVQGKKVLLVLDDVWWN 285 (961)
Q Consensus 236 -~~~~~~~~~il~~l~~-------------~-------~-~--------~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~ 285 (961)
.+....+..+...+.. . . . .....+.+.+.+.+... ++++||+||+++-
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~ 149 (357)
T 2fna_A 71 YISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQEL 149 (357)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGG
T ss_pred CCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHh
Confidence 3445555554443310 0 0 0 11234555555554322 4999999999631
Q ss_pred C---ChhhHHHHHHhccCCCCCcEEEEecCCCcccccc---cccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCC
Q 037574 286 A---CPRYWEQLMYSLKSGSEGSRILVTRRGEKNGTNM---TEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRS 359 (961)
Q Consensus 286 ~---~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~---~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~ 359 (961)
+ +.+.+..+...... ..+.++|+|++.......+ ... .....+.....+.+.+|+.+++.+++.........
T Consensus 150 ~~~~~~~~~~~l~~~~~~-~~~~~~i~~g~~~~~l~~~l~~~~~-~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~ 227 (357)
T 2fna_A 150 VKLRGVNLLPALAYAYDN-LKRIKFIMSGSEMGLLYDYLRVEDP-ESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI 227 (357)
T ss_dssp GGCTTCCCHHHHHHHHHH-CTTEEEEEEESSHHHHHHHTTTTCT-TSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC
T ss_pred hccCchhHHHHHHHHHHc-CCCeEEEEEcCchHHHHHHHhccCC-CCccccCccceeecCCCCHHHHHHHHHHHHHHcCC
Confidence 1 12333334333322 2467899999865421110 000 00000111267999999999999999875421111
Q ss_pred CCCccchHHHHHHHHHhcCCchHHHHHHHhhccCCCCHHHHHHH-hhhhhcccchhhhhccCCCCcchhhhH-hhhc--C
Q 037574 360 SDDREKFEPIGRLVVGKCKGLPFAVKILGSLLRFKTSIEEWQSV-LDSEIWNLDSKICKRAGVGDEYFSPLL-LSYY--D 435 (961)
Q Consensus 360 ~~~~~~l~~~~~~I~~~c~G~PLai~~~~~~l~~~~~~~~w~~~-l~~~~~~~~~~~~~~~~~~~~~~~~l~-~sy~--~ 435 (961)
.. +. ...|++.|+|+|+++..++..+....+...|..- .+.... .+...+. +.+. .
T Consensus 228 ~~--~~----~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~~~~~~~~~ 287 (357)
T 2fna_A 228 DF--KD----YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKK--------------LILKEFENFLHGREI 287 (357)
T ss_dssp CC--CC----HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH--------------HHHHHHHHHHTTCGG
T ss_pred CC--Cc----HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHH--------------HHHHHHHHHhhcccc
Confidence 11 11 2789999999999999998776432233333211 111000 0111111 1111 6
Q ss_pred CChHHHHHhhHhccCCCCcccChHHHHHHHH-HcCcccccccccHHHHHHHHHHHHHhCCCCcccccCCCCCeEEEEE-e
Q 037574 436 LSPALKKCFLYCSIFPKNYEIEKDRLIKLWM-AQGYLKLLESEDMEVIGEEYFANLASRSLFQDFQKSEFDGRIIRCQ-M 513 (961)
Q Consensus 436 L~~~~k~cfl~~a~fp~~~~i~~~~Li~~W~-a~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~-~ 513 (961)
||+..+..+..+|+ +. +...+..... ..|. .. .......+++.|++.+++.... + .|+ .
T Consensus 288 l~~~~~~~l~~la~---g~--~~~~l~~~~~~~~g~-----~~-~~~~~~~~L~~L~~~gli~~~~----~----~y~f~ 348 (357)
T 2fna_A 288 ARKRYLNIMRTLSK---CG--KWSDVKRALELEEGI-----EI-SDSEIYNYLTQLTKHSWIIKEG----E----KYCPS 348 (357)
T ss_dssp GHHHHHHHHHHHTT---CB--CHHHHHHHHHHHHCS-----CC-CHHHHHHHHHHHHHTTSEEESS----S----CEEES
T ss_pred ccHHHHHHHHHHHc---CC--CHHHHHHHHHHhcCC-----CC-CHHHHHHHHHHHHhCCCEEecC----C----EEEec
Confidence 88899999999998 22 4444443221 1121 01 1234678999999999997643 1 465 5
Q ss_pred CchHHHHH
Q 037574 514 HPIVHEFA 521 (961)
Q Consensus 514 Hdlv~~~a 521 (961)
|++++++.
T Consensus 349 ~~~~~~~l 356 (357)
T 2fna_A 349 EPLISLAF 356 (357)
T ss_dssp SHHHHHHT
T ss_pred CHHHHHhh
Confidence 78888763
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.52 E-value=1.7e-15 Score=164.34 Aligned_cols=77 Identities=18% Similarity=0.180 Sum_probs=40.3
Q ss_pred CCCCcceEeccCCCCcc-cCCcch--hccCCCcEeecCCCCCCcccccccccC-----CCCcEEEeCCcccccCC-cCCC
Q 037574 626 RLIHLRYLNLSKNNKIK-KLPKTL--CELYNLQTLELSWCSNLRNLPQGMGKL-----INLRHVVNVGTPLSYMP-KGIE 696 (961)
Q Consensus 626 ~l~~Lr~L~L~~~~~i~-~lp~~i--~~L~~L~~L~l~~~~~l~~lP~~i~~L-----~~L~~L~l~~~~l~~~p-~~i~ 696 (961)
++++|++|+|++|. +. .+|..+ ..+++|++|++++|. +..+|..+..+ ++|++|++++|++..++ ..++
T Consensus 93 ~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLE-VTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEB-CBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred CcCCccEEEccCCc-ccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 45555666665555 33 455544 555556666665554 44445444444 55566665555555444 3344
Q ss_pred CCCCCCcC
Q 037574 697 RWSCLRTL 704 (961)
Q Consensus 697 ~L~~L~~L 704 (961)
.+++|++|
T Consensus 171 ~l~~L~~L 178 (312)
T 1wwl_A 171 VFPALSTL 178 (312)
T ss_dssp CCSSCCEE
T ss_pred cCCCCCEE
Confidence 44444443
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.52 E-value=4.1e-15 Score=171.43 Aligned_cols=103 Identities=13% Similarity=0.120 Sum_probs=48.6
Q ss_pred CCcCceEEeeecCccccccccccccCceEEEEeCCCCCCcC-CCCCCCCccceeeeccccCceEeCccccccCCCCCCCc
Q 037574 789 SNLESMEMFYYRGESISLMMIMLSNKLRSLTLDRCVNLKQL-PGLGGLPSLESLTLRNMKRIEKVGNEFLLTDRTSSTGT 867 (961)
Q Consensus 789 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-~~l~~lp~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~ 867 (961)
++|+.|++++|....++... .+++|+.|+|++|. +..+ |.++.+++|+.|+|++ +.+..+|..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~--~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~l----------- 233 (487)
T 3oja_A 169 DTLEHLNLQYNFIYDVKGQV--VFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRN-NKLVLIEKAL----------- 233 (487)
T ss_dssp TTCCEEECTTSCCCEEECCC--CCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTT-SCCCEECTTC-----------
T ss_pred CcccEEecCCCccccccccc--cCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecC-CcCcccchhh-----------
Confidence 44555555554443332221 35566666666653 3333 2455566666666665 3355444331
Q ss_pred ccccCcccceeeccccccccccccccccCcccccccccceeccccc
Q 037574 868 AVSAFPKLKSLVFLKMKAWREWKYKTKRGKHYKIMPCLCSLTIGYC 913 (961)
Q Consensus 868 ~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~C 913 (961)
..+++|+.|.+.+++-..... +.....++.|+.|.+..+
T Consensus 234 --~~l~~L~~L~l~~N~l~c~~~-----~~~~~~l~~L~~l~~~~~ 272 (487)
T 3oja_A 234 --RFSQNLEHFDLRGNGFHCGTL-----RDFFSKNQRVQTVAKQTV 272 (487)
T ss_dssp --CCCTTCCEEECTTCCBCHHHH-----HHHHTTCHHHHHHHHHHH
T ss_pred --ccCCCCCEEEcCCCCCcCcch-----HHHHHhCCCCcEEecccc
Confidence 245566666665543221110 112234566666666533
No 75
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.52 E-value=1.7e-16 Score=183.01 Aligned_cols=137 Identities=16% Similarity=0.218 Sum_probs=65.0
Q ss_pred CCccEEEEEeccCCC----CCcccccCCCCccEEEeccCCCccccccchhhhccCC----cccEEEccCCChhhhhhhcc
Q 037574 548 EKFPHLMITFESDQG----AFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLT----CLRTLELSNHDNVLCKVIKK 619 (961)
Q Consensus 548 ~~~r~l~l~~~~~~~----~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~----~Lr~L~L~~~~~~~~~~~~~ 619 (961)
++++++.+..|.+.. .++..+..+++|++|+++++. +....+...+..++ +|++|+|++|.. .......
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~--l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i-~~~~~~~ 104 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE--LGDVGVHCVLQGLQTPSCKIQKLSLQNCCL-TGAGCGV 104 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC--CHHHHHHHHHHTTCSTTCCCCEEECTTSCC-BGGGHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc--CChHHHHHHHHHHhhCCCceeEEEccCCCC-CHHHHHH
Confidence 455666666655531 223345555666666666554 22111222223333 466666666520 0000123
Q ss_pred cchhhcCCCCcceEeccCCCCcccC-Ccchh-----ccCCCcEeecCCCCCCcc-----cccccccCCCCcEEEeCCccc
Q 037574 620 VPKQIKRLIHLRYLNLSKNNKIKKL-PKTLC-----ELYNLQTLELSWCSNLRN-----LPQGMGKLINLRHVVNVGTPL 688 (961)
Q Consensus 620 lp~~i~~l~~Lr~L~L~~~~~i~~l-p~~i~-----~L~~L~~L~l~~~~~l~~-----lP~~i~~L~~L~~L~l~~~~l 688 (961)
+|..+..+++|++|+|++|. +... +..+. .+.+|++|++++|. +.. ++..+..+++|++|++++|.+
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence 45556666666666666665 4321 12121 13456666666654 332 344455556666666655554
Q ss_pred c
Q 037574 689 S 689 (961)
Q Consensus 689 ~ 689 (961)
.
T Consensus 183 ~ 183 (461)
T 1z7x_W 183 N 183 (461)
T ss_dssp H
T ss_pred c
Confidence 3
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.51 E-value=4.3e-14 Score=152.75 Aligned_cols=64 Identities=19% Similarity=0.122 Sum_probs=42.1
Q ss_pred CCCCcCceEEeeecCccccccccccccCceEEEEeCCCCCCcCCCCCCCCccceeeeccccCceEeCc
Q 037574 787 LPSNLESMEMFYYRGESISLMMIMLSNKLRSLTLDRCVNLKQLPGLGGLPSLESLTLRNMKRIEKVGN 854 (961)
Q Consensus 787 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~l~~l~~ 854 (961)
.+++|+.|+++++....++.+ ..+++|++|+|++| .+..++.+..+++|+.|+++++ .+...+.
T Consensus 171 ~l~~L~~L~l~~n~l~~~~~l--~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~l~~N-~i~~~~~ 234 (308)
T 1h6u_A 171 NLSKLTTLKADDNKISDISPL--ASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTNQ-TITNQPV 234 (308)
T ss_dssp TCTTCCEEECCSSCCCCCGGG--GGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEEE-EEECCCE
T ss_pred CCCCCCEEECCCCccCcChhh--cCCCCCCEEEccCC-ccCccccccCCCCCCEEEccCC-eeecCCe
Confidence 345666666666555444322 36788888888888 4556666888889999999884 3554443
No 77
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.51 E-value=4.7e-14 Score=150.94 Aligned_cols=206 Identities=19% Similarity=0.202 Sum_probs=151.8
Q ss_pred CcCCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhccc-chh
Q 037574 545 SSHEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKV-PKQ 623 (961)
Q Consensus 545 ~~~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~l-p~~ 623 (961)
..++++++|.++++.+....+..+..+++|++|++.++. +. .+.+..|..+++|++|+|++| ..+..+ |..
T Consensus 29 ~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~--l~-~~~~~~~~~l~~L~~L~l~~n-----~~l~~~~~~~ 100 (285)
T 1ozn_A 29 GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV--LA-RIDAAAFTGLALLEQLDLSDN-----AQLRSVDPAT 100 (285)
T ss_dssp TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC--CC-EECTTTTTTCTTCCEEECCSC-----TTCCCCCTTT
T ss_pred CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc--cc-eeCHhhcCCccCCCEEeCCCC-----CCccccCHHH
Confidence 346789999999998865555678999999999999886 33 344667899999999999998 325555 778
Q ss_pred hcCCCCcceEeccCCCCcccC-CcchhccCCCcEeecCCCCCCcccccc-cccCCCCcEEEeCCcccccCCcC-CCCCCC
Q 037574 624 IKRLIHLRYLNLSKNNKIKKL-PKTLCELYNLQTLELSWCSNLRNLPQG-MGKLINLRHVVNVGTPLSYMPKG-IERWSC 700 (961)
Q Consensus 624 i~~l~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~l~~~p~~-i~~L~~ 700 (961)
+..+++|++|+|++|. +..+ |..+.++++|++|++++|. +..+|.. +..+++|++|++++|.+..+|.. +..+++
T Consensus 101 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 178 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178 (285)
T ss_dssp TTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred hcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccccCHHHhcCccc
Confidence 9999999999999999 7666 5778999999999999987 7777754 88999999999999999888764 666666
Q ss_pred CCcCCceEecCCCCCCCCCChhhhhcccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHH
Q 037574 701 LRTLSEFIVSGGNDDKKASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEA 780 (961)
Q Consensus 701 L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 780 (961)
|+.|. +..+.... .....+..+++|+.|+++.+.... .
T Consensus 179 L~~L~---l~~n~l~~------------------------------~~~~~~~~l~~L~~L~l~~n~l~~---------~ 216 (285)
T 1ozn_A 179 LDRLL---LHQNRVAH------------------------------VHPHAFRDLGRLMTLYLFANNLSA---------L 216 (285)
T ss_dssp CCEEE---CCSSCCCE------------------------------ECTTTTTTCTTCCEEECCSSCCSC---------C
T ss_pred cCEEE---CCCCcccc------------------------------cCHhHccCcccccEeeCCCCcCCc---------C
Confidence 66654 33322110 011224455677777777765431 0
Q ss_pred HHhcCCCCCCcCceEEeeecCc
Q 037574 781 VVEGLELPSNLESMEMFYYRGE 802 (961)
Q Consensus 781 ~l~~l~~~~~L~~L~l~~~~~~ 802 (961)
....+..+++|+.|+++++...
T Consensus 217 ~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 217 PTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CHHHHTTCTTCCEEECCSSCEE
T ss_pred CHHHcccCcccCEEeccCCCcc
Confidence 1122344578888888877643
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.48 E-value=6.1e-14 Score=161.60 Aligned_cols=210 Identities=16% Similarity=0.178 Sum_probs=118.9
Q ss_pred CccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcccCCcchhccC
Q 037574 573 KLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKKLPKTLCELY 652 (961)
Q Consensus 573 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~ 652 (961)
+|++|++++|. +. .+.+..|..+++|++|+|++|. +...+. ++.+++|++|+|++|. +..+|. .+
T Consensus 35 ~L~~L~Ls~n~--l~-~~~~~~~~~l~~L~~L~Ls~N~------l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~ 99 (487)
T 3oja_A 35 NVKELDLSGNP--LS-QISAADLAPFTKLELLNLSSNV------LYETLD-LESLSTLRTLDLNNNY-VQELLV----GP 99 (487)
T ss_dssp GCCEEECCSSC--CC-CCCGGGGTTCTTCCEEECTTSC------CEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CT
T ss_pred CccEEEeeCCc--CC-CCCHHHHhCCCCCCEEEeeCCC------CCCCcc-cccCCCCCEEEecCCc-CCCCCC----CC
Confidence 56666666654 22 2234455666666666666662 433333 5666666666666665 555543 25
Q ss_pred CCcEeecCCCCCCcccccccccCCCCcEEEeCCcccccCC-cCCCCCCCCCcCCceEecCCCCCCCCCChhhhhcccccC
Q 037574 653 NLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLSYMP-KGIERWSCLRTLSEFIVSGGNDDKKASKLECLKSLNHLQ 731 (961)
Q Consensus 653 ~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~ 731 (961)
+|++|++++|. +..+|.. .+++|++|++++|.+..++ ..++.+++|+.|. ++.+.
T Consensus 100 ~L~~L~L~~N~-l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~---Ls~N~------------------ 155 (487)
T 3oja_A 100 SIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD---LKLNE------------------ 155 (487)
T ss_dssp TCCEEECCSSC-CCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEE---CTTSC------------------
T ss_pred CcCEEECcCCc-CCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEE---CCCCC------------------
Confidence 66666666655 4444432 3456666666666555442 2344444444332 11111
Q ss_pred CceeEcCCCCCChhhhHhhccc-cccccCceeEEecCCCCcCCCccchHHHHhcCCCCCCcCceEEeeecCccc-ccccc
Q 037574 732 GSLNIKGLGNVDKDEIFKAELS-KREKLLALGISFDRDDEEGRKKEDDEAVVEGLELPSNLESMEMFYYRGESI-SLMMI 809 (961)
Q Consensus 732 ~~L~i~~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~-~~~~~ 809 (961)
.....+..+. .+++|+.|+|++|.... ......+++|+.|+++++....+ +.+.
T Consensus 156 ------------l~~~~~~~l~~~l~~L~~L~Ls~N~l~~-----------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~- 211 (487)
T 3oja_A 156 ------------IDTVNFAELAASSDTLEHLNLQYNFIYD-----------VKGQVVFAKLKTLDLSSNKLAFMGPEFQ- 211 (487)
T ss_dssp ------------CCEEEGGGGGGGTTTCCEEECTTSCCCE-----------EECCCCCTTCCEEECCSSCCCEECGGGG-
T ss_pred ------------CCCcChHHHhhhCCcccEEecCCCcccc-----------ccccccCCCCCEEECCCCCCCCCCHhHc-
Confidence 0111111222 45677777777765431 12233467888888888877665 3333
Q ss_pred ccccCceEEEEeCCCCCCcCC-CCCCCCccceeeecccc
Q 037574 810 MLSNKLRSLTLDRCVNLKQLP-GLGGLPSLESLTLRNMK 847 (961)
Q Consensus 810 ~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~ 847 (961)
.+++|+.|+|++|. +..+| .++.+++|+.|++++++
T Consensus 212 -~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 212 -SAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp -GGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred -CCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCC
Confidence 67889999999884 44566 57788999999998854
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.47 E-value=1e-13 Score=147.49 Aligned_cols=149 Identities=17% Similarity=0.231 Sum_probs=96.7
Q ss_pred cCCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccc-hhh
Q 037574 546 SHEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVP-KQI 624 (961)
Q Consensus 546 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp-~~i 624 (961)
.+.++++|+++++.+....+..+..+++|++|++.+|. +. .+.+..|..+++|++|+|++| . +..++ ..+
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~-~~~~~~~~~l~~L~~L~L~~n-----~-l~~~~~~~~ 96 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE--IQ-TIEDGAYQSLSHLSTLILTGN-----P-IQSLALGAF 96 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC--CC-EECTTTTTTCTTCCEEECTTC-----C-CCEECTTTT
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCc--CC-ccCHHHccCCcCCCEEECCCC-----c-cCccChhhh
Confidence 34567777777776643333466777777777777765 32 334445677777777777777 3 44443 557
Q ss_pred cCCCCcceEeccCCCCcccCCc-chhccCCCcEeecCCCCCCcc--cccccccCCCCcEEEeCCcccccCCc-CCCCCCC
Q 037574 625 KRLIHLRYLNLSKNNKIKKLPK-TLCELYNLQTLELSWCSNLRN--LPQGMGKLINLRHVVNVGTPLSYMPK-GIERWSC 700 (961)
Q Consensus 625 ~~l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~--lP~~i~~L~~L~~L~l~~~~l~~~p~-~i~~L~~ 700 (961)
.++++|++|++++|. +..++. .++.+++|++|++++|. +.. +|..+..+++|++|++++|++..++. .+..+.+
T Consensus 97 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 174 (276)
T 2z62_A 97 SGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174 (276)
T ss_dssp TTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred cCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhh
Confidence 777777777777777 665554 57777777777777766 444 56777777777777777776665543 3444445
Q ss_pred CCcCC
Q 037574 701 LRTLS 705 (961)
Q Consensus 701 L~~L~ 705 (961)
|+.|.
T Consensus 175 L~~l~ 179 (276)
T 2z62_A 175 MPLLN 179 (276)
T ss_dssp CTTCC
T ss_pred ccccc
Confidence 54443
No 80
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.46 E-value=5e-15 Score=170.62 Aligned_cols=279 Identities=18% Similarity=0.144 Sum_probs=166.6
Q ss_pred CCCccEEEEEeccCCCCC-cccccCCCCccEEEeccCCCccccc---cchhhhccCCcccEEEccCCChhhhhhhcc-cc
Q 037574 547 HEKFPHLMITFESDQGAF-PNSVYNQKKLRSLGVEHGGGFMNGI---VLSKVFDQLTCLRTLELSNHDNVLCKVIKK-VP 621 (961)
Q Consensus 547 ~~~~r~l~l~~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~---~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~-lp 621 (961)
++.+++|+++++.+.... ...+..+++|++|++++|. +... .++..+..+++|++|+|++|. +.. .+
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~--l~~~~~~~l~~~l~~~~~L~~L~Ls~n~------l~~~~~ 73 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG--LTEARCKDISSALRVNPALAELNLRSNE------LGDVGV 73 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC--CCHHHHHHHHHHHHTCTTCCEEECTTCC------CHHHHH
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCC--CCHHHHHHHHHHHHhCCCcCEEeCCCCc------CChHHH
Confidence 356788999888774222 2236788999999999987 3211 245668889999999999984 322 22
Q ss_pred hhh-cCCC----CcceEeccCCCCcc-----cCCcchhccCCCcEeecCCCCCCccc-ccccc-----cCCCCcEEEeCC
Q 037574 622 KQI-KRLI----HLRYLNLSKNNKIK-----KLPKTLCELYNLQTLELSWCSNLRNL-PQGMG-----KLINLRHVVNVG 685 (961)
Q Consensus 622 ~~i-~~l~----~Lr~L~L~~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~l~~l-P~~i~-----~L~~L~~L~l~~ 685 (961)
..+ ..+. +|++|+|++|. +. .+|..+..+++|++|++++|. +... +..+. .+++|++|++++
T Consensus 74 ~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~ 151 (461)
T 1z7x_W 74 HCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEY 151 (461)
T ss_dssp HHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCC
Confidence 222 3344 69999999998 66 568889999999999999987 5432 22222 256899999988
Q ss_pred ccccc-----CCcCCCCCCCCCcCCceEecCCCCCCCCCChhhhh-----cccccCCceeEcCCCCC-ChhhhHhhcccc
Q 037574 686 TPLSY-----MPKGIERWSCLRTLSEFIVSGGNDDKKASKLECLK-----SLNHLQGSLNIKGLGNV-DKDEIFKAELSK 754 (961)
Q Consensus 686 ~~l~~-----~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~-----~L~~L~~~L~i~~l~~~-~~~~~~~~~l~~ 754 (961)
|.+.. ++..+..+++|++|.. ..+... ...+..+. .+.+|+ .|.+.+..-. .....+...+..
T Consensus 152 n~l~~~~~~~l~~~l~~~~~L~~L~L---~~n~i~--~~~~~~l~~~l~~~~~~L~-~L~L~~n~l~~~~~~~l~~~l~~ 225 (461)
T 1z7x_W 152 CSLSAASCEPLASVLRAKPDFKELTV---SNNDIN--EAGVRVLCQGLKDSPCQLE-ALKLESCGVTSDNCRDLCGIVAS 225 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCTTCCEEEC---CSSBCH--HHHHHHHHHHHHHSCCCCC-EEECTTSCCBTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhhCCCCCEEEC---cCCCcc--hHHHHHHHHHHhcCCCCce-EEEccCCCCcHHHHHHHHHHHHh
Confidence 87764 2344555566666643 333211 01111111 122444 4444443221 122234455667
Q ss_pred ccccCceeEEecCCCCcCCCccchHHHHhcC-CCCCCcCceEEeeecCcccc--ccc--cccccCceEEEEeCCCCCCcC
Q 037574 755 REKLLALGISFDRDDEEGRKKEDDEAVVEGL-ELPSNLESMEMFYYRGESIS--LMM--IMLSNKLRSLTLDRCVNLKQL 829 (961)
Q Consensus 755 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~~~~~L~~L~l~~~~~~~~~--~~~--~~~l~~L~~L~L~~~~~~~~l 829 (961)
+++|+.|+++++.... .....+...+ ...++|++|+++++...... .+. ...+++|++|+|++|. +...
T Consensus 226 ~~~L~~L~Ls~n~l~~-----~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~ 299 (461)
T 1z7x_W 226 KASLRELALGSNKLGD-----VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDE 299 (461)
T ss_dssp CTTCCEEECCSSBCHH-----HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHH
T ss_pred CCCccEEeccCCcCCh-----HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-CchH
Confidence 7888999988875421 0011122222 24578888888887655420 011 1246778888888773 2211
Q ss_pred C--C-----CCCCCccceeeecccc
Q 037574 830 P--G-----LGGLPSLESLTLRNMK 847 (961)
Q Consensus 830 ~--~-----l~~lp~L~~L~L~~~~ 847 (961)
. . ....++|+.|++++|.
T Consensus 300 ~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 300 GARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHHhccCCccceeeEcCCCC
Confidence 1 1 1123577778777753
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.45 E-value=7.5e-13 Score=137.43 Aligned_cols=102 Identities=19% Similarity=0.201 Sum_probs=57.6
Q ss_pred EEEEeCCCCCCcCCC--CCCCCccc-eeeeccccCceEeCccccccCCCCCCCcccccCcccceeecccccccccccccc
Q 037574 817 SLTLDRCVNLKQLPG--LGGLPSLE-SLTLRNMKRIEKVGNEFLLTDRTSSTGTAVSAFPKLKSLVFLKMKAWREWKYKT 893 (961)
Q Consensus 817 ~L~L~~~~~~~~l~~--l~~lp~L~-~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~ 893 (961)
.|++++|..+..+|. +..+++|+ .|++++ +.++.++...+ .. ++|+.|.+.++++++.+..
T Consensus 134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~------------~~-~~L~~L~L~~n~~l~~i~~-- 197 (239)
T 2xwt_C 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAF------------NG-TKLDAVYLNKNKYLTVIDK-- 197 (239)
T ss_dssp EEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCCCEECTTTT------------TT-CEEEEEECTTCTTCCEECT--
T ss_pred EEECCCCcchhhcCcccccchhcceeEEEcCC-CCCcccCHhhc------------CC-CCCCEEEcCCCCCcccCCH--
Confidence 555555534444442 55666666 666665 34555554322 12 4666666666544544331
Q ss_pred ccCcccccc-cccceecccccccCcCCCCCCCCCCCCeEEEccccch
Q 037574 894 KRGKHYKIM-PCLCSLTIGYCNELEMLPAEHFPDTLKDLKIISCSKL 939 (961)
Q Consensus 894 ~~~~~~~~~-p~L~~L~i~~C~~L~~lp~~~l~~sL~~L~i~~c~~l 939 (961)
.....+ ++|+.|++++ +.++.+|...++. |+.|.+.++.++
T Consensus 198 ---~~~~~l~~~L~~L~l~~-N~l~~l~~~~~~~-L~~L~l~~~~~l 239 (239)
T 2xwt_C 198 ---DAFGGVYSGPSLLDVSQ-TSVTALPSKGLEH-LKELIARNTWTL 239 (239)
T ss_dssp ---TTTTTCSBCCSEEECTT-CCCCCCCCTTCTT-CSEEECTTC---
T ss_pred ---HHhhccccCCcEEECCC-CccccCChhHhcc-CceeeccCccCC
Confidence 122345 7788888877 5677777765555 888888777653
No 82
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.44 E-value=6.5e-15 Score=175.63 Aligned_cols=130 Identities=18% Similarity=0.230 Sum_probs=72.5
Q ss_pred CCccEEEEEecc-CCC-CCcccccCCCCccEEEeccCCCccc---cccchhhhccCCcccEEEccCCChhhhhhhcccch
Q 037574 548 EKFPHLMITFES-DQG-AFPNSVYNQKKLRSLGVEHGGGFMN---GIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPK 622 (961)
Q Consensus 548 ~~~r~l~l~~~~-~~~-~~~~~~~~~~~Lr~L~l~~~~~~~~---~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~ 622 (961)
+++++|.+..+. ... .++.....+++|++|++.+|. +. ...++.....+++|++|++++|... -....++.
T Consensus 130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~--i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~--~~~~~l~~ 205 (594)
T 2p1m_B 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD--VDDVSGHWLSHFPDTYTSLVSLNISCLASE--VSFSALER 205 (594)
T ss_dssp TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE--EECCCGGGGGGSCTTCCCCCEEECTTCCSC--CCHHHHHH
T ss_pred CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc--cCCcchHHHHHHhhcCCcCcEEEecccCCc--CCHHHHHH
Confidence 467777777662 211 122333467777777777765 11 0113333446677777777776200 00112233
Q ss_pred hhcCCCCcceEeccCCCCcccCCcchhccCCCcEeecCCCCC------CcccccccccCCCCcEE
Q 037574 623 QIKRLIHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSN------LRNLPQGMGKLINLRHV 681 (961)
Q Consensus 623 ~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~------l~~lP~~i~~L~~L~~L 681 (961)
.+..+++|++|+|++|..+..+|..+.++++|+.|++..|.. +..++..+.++++|+.|
T Consensus 206 l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~L 270 (594)
T 2p1m_B 206 LVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL 270 (594)
T ss_dssp HHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEE
T ss_pred HHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccc
Confidence 334567777777777754666777777777777777655431 23344455556666666
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.42 E-value=2.7e-13 Score=140.76 Aligned_cols=96 Identities=17% Similarity=0.296 Sum_probs=55.7
Q ss_pred cccEEEccCCChhhhhhhcccch-hhcCCCCcceEeccCCCCcccCCc-chhccCCCcEeecCCCCCCccccc-ccccCC
Q 037574 600 CLRTLELSNHDNVLCKVIKKVPK-QIKRLIHLRYLNLSKNNKIKKLPK-TLCELYNLQTLELSWCSNLRNLPQ-GMGKLI 676 (961)
Q Consensus 600 ~Lr~L~L~~~~~~~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~ 676 (961)
.|++|+|++| . +..+|. .++.+++|++|+|++|..++.+|. .+.++++|++|++++|+.+..+|. .+..++
T Consensus 32 ~l~~L~l~~n-----~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~ 105 (239)
T 2xwt_C 32 STQTLKLIET-----H-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP 105 (239)
T ss_dssp TCCEEEEESC-----C-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT
T ss_pred cccEEEEeCC-----c-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC
Confidence 5666666666 2 555544 456666666666666643555553 566666666666666333656553 456666
Q ss_pred CCcEEEeCCcccccCCcCCCCCCCCC
Q 037574 677 NLRHVVNVGTPLSYMPKGIERWSCLR 702 (961)
Q Consensus 677 ~L~~L~l~~~~l~~~p~~i~~L~~L~ 702 (961)
+|++|++++|.+..+|. ++.+++|+
T Consensus 106 ~L~~L~l~~n~l~~lp~-~~~l~~L~ 130 (239)
T 2xwt_C 106 LLKFLGIFNTGLKMFPD-LTKVYSTD 130 (239)
T ss_dssp TCCEEEEEEECCCSCCC-CTTCCBCC
T ss_pred CCCEEeCCCCCCccccc-cccccccc
Confidence 66666666666655554 44444444
No 84
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.42 E-value=4.2e-14 Score=153.33 Aligned_cols=245 Identities=15% Similarity=0.093 Sum_probs=151.5
Q ss_pred hccCCcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcc--cCCcchh-------ccCCCcEeecCCCCCC
Q 037574 595 FDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIK--KLPKTLC-------ELYNLQTLELSWCSNL 665 (961)
Q Consensus 595 ~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~--~lp~~i~-------~L~~L~~L~l~~~~~l 665 (961)
++..+.|+.|++++| . + .+|..+... |++|+|++|. +. .+|..+. ++++|++|++++|...
T Consensus 39 ~~~~~~L~~l~l~~n-----~-l-~~p~~~~~~--L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 108 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVD-----T-E-ADLGQFTDI--IKSLSLKRLT-VRAARIPSRILFGALRVLGISGLQELTLENLEVT 108 (312)
T ss_dssp EEEEEECTTHHHHCC-----T-T-CCCHHHHHH--HHHCCCCEEE-EEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCB
T ss_pred EccCCCceeEeeccc-----c-c-ccHHHHHHH--Hhhccccccc-ccCCCcCHHHHHHHHHhcCcCCccEEEccCCccc
Confidence 456678888999998 4 5 778877665 9999999988 64 4666665 7999999999999844
Q ss_pred ccccccc--ccCCCCcEEEeCCcccccCCcCCCCC-----CCCCcCCceEecCCCCCCCCCChhhhhcccccCCceeEcC
Q 037574 666 RNLPQGM--GKLINLRHVVNVGTPLSYMPKGIERW-----SCLRTLSEFIVSGGNDDKKASKLECLKSLNHLQGSLNIKG 738 (961)
Q Consensus 666 ~~lP~~i--~~L~~L~~L~l~~~~l~~~p~~i~~L-----~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~ 738 (961)
..+|..+ ..+++|++|++++|.+...|..++.+ ++|+.|. +..+.+...
T Consensus 109 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~---L~~N~l~~~--------------------- 164 (312)
T 1wwl_A 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS---IAQAHSLNF--------------------- 164 (312)
T ss_dssp SCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEE---EESCSCCCC---------------------
T ss_pred chhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEE---eeCCCCccc---------------------
Confidence 4788876 88999999999999988877655555 4555544 333321111
Q ss_pred CCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHHHHhcC--CCCCCcCceEEeeecCcccccc---cccccc
Q 037574 739 LGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAVVEGL--ELPSNLESMEMFYYRGESISLM---MIMLSN 813 (961)
Q Consensus 739 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l--~~~~~L~~L~l~~~~~~~~~~~---~~~~l~ 813 (961)
....+..+++|+.|+++.+.... ....+..+ ..+++|++|+++++....++.+ ....++
T Consensus 165 ---------~~~~~~~l~~L~~L~Ls~N~l~~-------~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 165 ---------SCEQVRVFPALSTLDLSDNPELG-------ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228 (312)
T ss_dssp ---------CTTTCCCCSSCCEEECCSCTTCH-------HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred ---------hHHHhccCCCCCEEECCCCCcCc-------chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence 11223455666666666664320 11122233 4456777777776665533111 112456
Q ss_pred CceEEEEeCCCCCCcC--CCCCCCCccceeeeccccCceEeCccccccCCCCCCCcccccCcccceeecccccccccccc
Q 037574 814 KLRSLTLDRCVNLKQL--PGLGGLPSLESLTLRNMKRIEKVGNEFLLTDRTSSTGTAVSAFPKLKSLVFLKMKAWREWKY 891 (961)
Q Consensus 814 ~L~~L~L~~~~~~~~l--~~l~~lp~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~ 891 (961)
+|+.|+|++|...... +.+..+++|+.|+|+++ .++.+|.. .+++|+.|+++++ .+..+..
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~---------------~~~~L~~L~Ls~N-~l~~~p~ 291 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKG---------------LPAKLSVLDLSYN-RLDRNPS 291 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSS---------------CCSEEEEEECCSS-CCCSCCC
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccChhhhh---------------ccCCceEEECCCC-CCCCChh
Confidence 7777777776432222 23455677777777763 34444332 2267777777665 3444432
Q ss_pred ccccCcccccccccceeccccc
Q 037574 892 KTKRGKHYKIMPCLCSLTIGYC 913 (961)
Q Consensus 892 ~~~~~~~~~~~p~L~~L~i~~C 913 (961)
.. .+++|+.|+++++
T Consensus 292 ----~~---~l~~L~~L~L~~N 306 (312)
T 1wwl_A 292 ----PD---ELPQVGNLSLKGN 306 (312)
T ss_dssp ----TT---TSCEEEEEECTTC
T ss_pred ----Hh---hCCCCCEEeccCC
Confidence 11 4677777777774
No 85
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.41 E-value=2.5e-11 Score=136.00 Aligned_cols=302 Identities=17% Similarity=0.092 Sum_probs=182.3
Q ss_pred CCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhc---c-CceeEEEEeCCCCC
Q 037574 162 PLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKA---N-FDKRIWVSASCPRD 237 (961)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~-F~~~~wv~~s~~~~ 237 (961)
+..++||+.+++.+..++...... ...+.+.|+|++|+||||||+.+++...... . -...+|+++....+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~------~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 91 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRG------EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRET 91 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSS------CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcC------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCC
Confidence 467999999999999988653111 3456789999999999999999998421110 1 12467888888888
Q ss_pred HHHHHHHHHHHhcCCCCC-cccHHHHHHHHHHHh--cCCceEEEeecccCCCChh--hHHHHHHhcc---CC--CCCcEE
Q 037574 238 EIRVAKAILESLKGSVSS-QVEMETVLQYINEFV--QGKKVLLVLDDVWWNACPR--YWEQLMYSLK---SG--SEGSRI 307 (961)
Q Consensus 238 ~~~~~~~il~~l~~~~~~-~~~~~~~~~~l~~~l--~~kr~LlVlDdvw~~~~~~--~~~~l~~~l~---~~--~~gs~i 307 (961)
...++..++.+++..... ..+..++...+.+.+ .+++.+|||||++ ..... ..+.+...+. .. ..+..+
T Consensus 92 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~-~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 170 (387)
T 2v1u_A 92 PYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEID-FLPKRPGGQDLLYRITRINQELGDRVWVSL 170 (387)
T ss_dssp HHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTT-HHHHSTTHHHHHHHHHHGGGCC-----CEE
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHh-hhcccCCCChHHHhHhhchhhcCCCceEEE
Confidence 999999999999764322 233556666666666 3568899999995 11111 2233333222 21 446678
Q ss_pred EEecCCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHc---CCCCCCCccchHHHHHHHHHhcC---Cch
Q 037574 308 LVTRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAF---DGRSSDDREKFEPIGRLVVGKCK---GLP 381 (961)
Q Consensus 308 lvTtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~---~~~~~~~~~~l~~~~~~I~~~c~---G~P 381 (961)
|.||+.......+... + ........+.+++++.++..+++.+.+. .... .+ + +..+.|++.++ |.|
T Consensus 171 I~~t~~~~~~~~l~~~-l--~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~-~~-~---~~~~~l~~~~~~~~G~~ 242 (387)
T 2v1u_A 171 VGITNSLGFVENLEPR-V--KSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGV-LD-P---DVVPLCAALAAREHGDA 242 (387)
T ss_dssp EEECSCSTTSSSSCHH-H--HTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTT-BC-S---SHHHHHHHHHHSSSCCH
T ss_pred EEEECCCchHhhhCHH-H--HhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCC-CC-H---HHHHHHHHHHHHhccCH
Confidence 8888766432222111 0 0011114799999999999999988743 2111 11 1 24566777777 999
Q ss_pred H-HHHHHHhhcc-------CCCCHHHHHHHhhhhhcccchhhhhccCCCCcchhhhHhhhcCCChHHHHHhhHhc-cCCC
Q 037574 382 F-AVKILGSLLR-------FKTSIEEWQSVLDSEIWNLDSKICKRAGVGDEYFSPLLLSYYDLSPALKKCFLYCS-IFPK 452 (961)
Q Consensus 382 L-ai~~~~~~l~-------~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~a-~fp~ 452 (961)
- ++..+..+.. ..-+.+++..++.... ...+.-++..||.+.+..++.++ ++..
T Consensus 243 r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~-----------------~~~~~~~~~~l~~~~~~~l~a~~~~~~~ 305 (387)
T 2v1u_A 243 RRALDLLRVAGEIAERRREERVRREHVYSARAEIE-----------------RDRVSEVVRTLPLHAKLVLLSIMMLEDG 305 (387)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH-----------------HHHHHHHHHSSCHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh-----------------hchHHHHHHcCCHHHHHHHHHHHHHhcC
Confidence 4 3333322221 1134556655554321 12345567889998887776666 4432
Q ss_pred CcccChHHHHHHHHH----cCcccccccccHHHHHHHHHHHHHhCCCCcccc
Q 037574 453 NYEIEKDRLIKLWMA----QGYLKLLESEDMEVIGEEYFANLASRSLFQDFQ 500 (961)
Q Consensus 453 ~~~i~~~~Li~~W~a----~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~ 500 (961)
...+....+.+.... .| .. ......+..+++.|...+++....
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 306 GRPASTGEIYERYKELTSTLG-LE----HVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp SCCEEHHHHHHHHHHHHHHTT-CC----CCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCcHHHHHHHHHHHHHhcC-CC----CCCHHHHHHHHHHHHhCCCeEEEe
Confidence 234555544443222 22 11 112456778999999999998854
No 86
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.40 E-value=7.4e-13 Score=141.48 Aligned_cols=122 Identities=21% Similarity=0.204 Sum_probs=82.1
Q ss_pred ccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhccc-chhhcCCCCcceEeccCCCCcccCCc
Q 037574 568 VYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKV-PKQIKRLIHLRYLNLSKNNKIKKLPK 646 (961)
Q Consensus 568 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~i~~lp~ 646 (961)
+..+++++++++.++. +. .+++. + .+.|++|+|++| . +..+ |..+..+++|++|+|++|. +..+|.
T Consensus 6 ~~~l~~l~~l~~~~~~--l~-~ip~~-~--~~~l~~L~L~~N-----~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~ 72 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN--LT-ALPPD-L--PKDTTILHLSEN-----L-LYTFSLATLMPYTRLTQLNLDRAE-LTKLQV 72 (290)
T ss_dssp EECSTTCCEEECTTSC--CS-SCCSC-C--CTTCCEEECTTS-----C-CSEEEGGGGTTCTTCCEEECTTSC-CCEEEC
T ss_pred ccccCCccEEECCCCC--CC-cCCCC-C--CCCCCEEEcCCC-----c-CCccCHHHhhcCCCCCEEECCCCc-cCcccC
Confidence 4566777888777665 22 22222 2 257788888887 3 4444 4567778888888888877 777765
Q ss_pred chhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcccccCCcC-CCCCCCCCcC
Q 037574 647 TLCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLSYMPKG-IERWSCLRTL 704 (961)
Q Consensus 647 ~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~~~p~~-i~~L~~L~~L 704 (961)
. +.+++|++|++++|. +..+|..+..+++|++|++++|++..+|.+ +..+++|+.|
T Consensus 73 ~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L 129 (290)
T 1p9a_G 73 D-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129 (290)
T ss_dssp C-SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEE
T ss_pred C-CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEE
Confidence 4 677888888888776 777777777788888888877777766543 4444444444
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.40 E-value=8.6e-13 Score=140.34 Aligned_cols=123 Identities=23% Similarity=0.279 Sum_probs=84.2
Q ss_pred CCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccc-hhhcCCCCcceEeccCCCCcccCC-cchh
Q 037574 572 KKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVP-KQIKRLIHLRYLNLSKNNKIKKLP-KTLC 649 (961)
Q Consensus 572 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~i~~lp-~~i~ 649 (961)
++|++|+++++. +. .+.+..|.++++|++|+|++| . +..++ ..+..+++|++|+|++|. +..+| ..+.
T Consensus 28 ~~l~~L~ls~n~--l~-~~~~~~~~~l~~L~~L~l~~n-----~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 97 (276)
T 2z62_A 28 FSTKNLDLSFNP--LR-HLGSYSFFSFPELQVLDLSRC-----E-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFS 97 (276)
T ss_dssp TTCCEEECTTCC--CC-EECTTTTTTCTTCSEEECTTC-----C-CCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTT
T ss_pred CCccEEECCCCc--cc-ccCHhHhccccCCcEEECCCC-----c-CCccCHHHccCCcCCCEEECCCCc-cCccChhhhc
Confidence 468888887775 33 333445777888888888887 3 55554 367778888888888887 66555 5677
Q ss_pred ccCCCcEeecCCCCCCccccc-ccccCCCCcEEEeCCccccc--CCcCCCCCCCCCcCC
Q 037574 650 ELYNLQTLELSWCSNLRNLPQ-GMGKLINLRHVVNVGTPLSY--MPKGIERWSCLRTLS 705 (961)
Q Consensus 650 ~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~l~~--~p~~i~~L~~L~~L~ 705 (961)
++++|++|++++|. +..++. .+..+++|++|++++|.+.. +|..++.+++|++|.
T Consensus 98 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~ 155 (276)
T 2z62_A 98 GLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155 (276)
T ss_dssp TCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred CCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEE
Confidence 88888888888776 555554 57778888888887777665 455555555555543
No 88
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.38 E-value=1.8e-11 Score=137.35 Aligned_cols=306 Identities=14% Similarity=0.095 Sum_probs=188.5
Q ss_pred CCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccC-ceeEEEEeCCCCCHHH
Q 037574 162 PLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANF-DKRIWVSASCPRDEIR 240 (961)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~ 240 (961)
+..++||+.+++++..++.....+. .+..+.+.|+|++|+||||||+.+++. ..... ..++|++++...+...
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~----~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~ 89 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNP----GHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTA 89 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHST----TSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCC----CCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHH
Confidence 4679999999999999887521100 023348999999999999999999883 33321 2567788888888889
Q ss_pred HHHHHHHHhcCCCCC-cccHHHHHHHHHHHhc--CCceEEEeecccCCCChhhHHHHHHhccCCC----CCcEEEEecCC
Q 037574 241 VAKAILESLKGSVSS-QVEMETVLQYINEFVQ--GKKVLLVLDDVWWNACPRYWEQLMYSLKSGS----EGSRILVTRRG 313 (961)
Q Consensus 241 ~~~~il~~l~~~~~~-~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~----~gs~ilvTtR~ 313 (961)
++..++..++..... ..+...+...+.+.+. +++.+||||+++ ..+......+...+.... .+..||++|+.
T Consensus 90 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~-~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~ 168 (389)
T 1fnn_A 90 IIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAF-NLAPDILSTFIRLGQEADKLGAFRIALVIVGHN 168 (389)
T ss_dssp HHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGG-GSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESS
T ss_pred HHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcc-ccchHHHHHHHHHHHhCCCCCcCCEEEEEEECC
Confidence 999999998654322 2345566666666664 568899999997 345566666766664322 46678888876
Q ss_pred CcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhc---------CCchHHH
Q 037574 314 EKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKC---------KGLPFAV 384 (961)
Q Consensus 314 ~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c---------~G~PLai 384 (961)
......+... +. .......+.+.+++.++..+++...+...... ..--.+..+.|++.+ +|.|-.+
T Consensus 169 ~~~~~~l~~~-~~--~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~ 243 (389)
T 1fnn_A 169 DAVLNNLDPS-TR--GIMGKYVIRFSPYTKDQIFDILLDRAKAGLAE--GSYSEDILQMIADITGAQTPLDTNRGDARLA 243 (389)
T ss_dssp THHHHTSCHH-HH--HHHTTCEEECCCCBHHHHHHHHHHHHHHHBCT--TSSCHHHHHHHHHHHSBSSTTCTTSCCHHHH
T ss_pred chHHHHhCHH-hh--hcCCCceEEeCCCCHHHHHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHhhcccCCCCCCcHHHH
Confidence 6432222110 00 00001369999999999999998875321000 012234677788888 7887544
Q ss_pred HHHHhhcc------C--CCCHHHHHHHhhhhhcccchhhhhccCCCCcchhhhHhhhcCCChHHHHHhhHhccCC---CC
Q 037574 385 KILGSLLR------F--KTSIEEWQSVLDSEIWNLDSKICKRAGVGDEYFSPLLLSYYDLSPALKKCFLYCSIFP---KN 453 (961)
Q Consensus 385 ~~~~~~l~------~--~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~a~fp---~~ 453 (961)
..+..... . .-+.++...+..... ...+.-.+..||.+.+.++..++.+. .+
T Consensus 244 ~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~-----------------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~ 306 (389)
T 1fnn_A 244 IDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL-----------------FGISEEVLIGLPLHEKLFLLAIVRSLKISHT 306 (389)
T ss_dssp HHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS-----------------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh-----------------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccC
Confidence 44332211 1 122233333222110 11233446778888888888777654 22
Q ss_pred cccChHHHHHHHHH----cCcccccccccHHHHHHHHHHHHHhCCCCccccc
Q 037574 454 YEIEKDRLIKLWMA----QGYLKLLESEDMEVIGEEYFANLASRSLFQDFQK 501 (961)
Q Consensus 454 ~~i~~~~Li~~W~a----~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~ 501 (961)
-.+....+...+.. .|... .+ ......++++|..++++.....
T Consensus 307 ~~~~~~~i~~~~~~~~~~~~~~~----~~-~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 307 PYITFGDAEESYKIVCEEYGERP----RV-HSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp SCEEHHHHHHHHHHHHHHTTCCC----CC-HHHHHHHHHHHHHTTSSEEEEC
T ss_pred CCccHHHHHHHHHHHHHHcCCCC----CC-HHHHHHHHHHHHhCCCeEEeee
Confidence 24566666655543 22111 11 2346789999999999988654
No 89
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.38 E-value=2.3e-12 Score=136.42 Aligned_cols=143 Identities=25% Similarity=0.380 Sum_probs=95.4
Q ss_pred CccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchh-hcCC
Q 037574 549 KFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQ-IKRL 627 (961)
Q Consensus 549 ~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~-i~~l 627 (961)
..+.+.+..+.+ ..+|..+. ++++.|+++++. +. .+.+..|.++++|++|+|++|. +..+|.. +..+
T Consensus 17 ~~~~l~~~~~~l-~~ip~~~~--~~l~~L~l~~n~--l~-~~~~~~~~~l~~L~~L~l~~n~------l~~i~~~~~~~l 84 (270)
T 2o6q_A 17 NKNSVDCSSKKL-TAIPSNIP--ADTKKLDLQSNK--LS-SLPSKAFHRLTKLRLLYLNDNK------LQTLPAGIFKEL 84 (270)
T ss_dssp TTTEEECTTSCC-SSCCSCCC--TTCSEEECCSSC--CS-CCCTTSSSSCTTCCEEECCSSC------CSCCCTTTTSSC
T ss_pred CCCEEEccCCCC-CccCCCCC--CCCCEEECcCCC--CC-eeCHHHhcCCCCCCEEECCCCc------cCeeChhhhcCC
Confidence 456666666666 34454332 567888887775 32 3344457778888888888773 6666654 4678
Q ss_pred CCcceEeccCCCCcccCCc-chhccCCCcEeecCCCCCCccccc-ccccCCCCcEEEeCCcccccCCcC-CCCCCCCCcC
Q 037574 628 IHLRYLNLSKNNKIKKLPK-TLCELYNLQTLELSWCSNLRNLPQ-GMGKLINLRHVVNVGTPLSYMPKG-IERWSCLRTL 704 (961)
Q Consensus 628 ~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~l~~~p~~-i~~L~~L~~L 704 (961)
++|++|+|++|. +..+|. .+..+++|++|++++|. +..+|. .+..+++|++|++++|.+..+|.. +..+++|+.|
T Consensus 85 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 85 KNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL 162 (270)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccccee
Confidence 888888888887 666664 45778888888888776 666654 467788888888877777777654 4555555555
Q ss_pred C
Q 037574 705 S 705 (961)
Q Consensus 705 ~ 705 (961)
.
T Consensus 163 ~ 163 (270)
T 2o6q_A 163 R 163 (270)
T ss_dssp E
T ss_pred E
Confidence 3
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.38 E-value=1.2e-13 Score=151.58 Aligned_cols=65 Identities=22% Similarity=0.209 Sum_probs=29.3
Q ss_pred cchhhcCCCCcceEeccCCCCcc-cCCcchhccCCCcEeecCCCCCCc--ccccccccCCCCcEEEeCC
Q 037574 620 VPKQIKRLIHLRYLNLSKNNKIK-KLPKTLCELYNLQTLELSWCSNLR--NLPQGMGKLINLRHVVNVG 685 (961)
Q Consensus 620 lp~~i~~l~~Lr~L~L~~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~--~lP~~i~~L~~L~~L~l~~ 685 (961)
+|..+..+++|++|+|++|. +. ..|..++.+++|++|++++|..+. .+|..+..+++|++|++++
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~ 177 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW 177 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCC
T ss_pred HHHHHhhCCCCCEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCC
Confidence 34444445555555555544 22 334444445555555555443233 1333344444444444433
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.38 E-value=1.1e-13 Score=152.09 Aligned_cols=101 Identities=16% Similarity=0.126 Sum_probs=67.0
Q ss_pred CccEEEeccCCCccccccchhhhccC--CcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCccc--CCcch
Q 037574 573 KLRSLGVEHGGGFMNGIVLSKVFDQL--TCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKK--LPKTL 648 (961)
Q Consensus 573 ~Lr~L~l~~~~~~~~~~~~~~~~~~l--~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~--lp~~i 648 (961)
.++.++++++. + .+..+..+ +.+++|+++++ . +...+..+..+++|++|+|++|. +.. +|..+
T Consensus 48 ~~~~l~l~~~~--~----~~~~~~~~~~~~l~~L~l~~n-----~-l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~ 114 (336)
T 2ast_B 48 LWQTLDLTGKN--L----HPDVTGRLLSQGVIAFRCPRS-----F-MDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGIL 114 (336)
T ss_dssp TSSEEECTTCB--C----CHHHHHHHHHTTCSEEECTTC-----E-ECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHH
T ss_pred hheeecccccc--C----CHHHHHhhhhccceEEEcCCc-----c-ccccchhhccCCCCCEEEccCCC-cCHHHHHHHH
Confidence 36677777654 1 23445555 77788888777 3 55555556677778888887776 543 66667
Q ss_pred hccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCc
Q 037574 649 CELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGT 686 (961)
Q Consensus 649 ~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~ 686 (961)
..+++|++|++++|......|..+..+++|++|++++|
T Consensus 115 ~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 115 SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp TTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred hhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence 77778888888777633355666777777777777655
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.37 E-value=6.8e-12 Score=135.39 Aligned_cols=192 Identities=21% Similarity=0.230 Sum_probs=124.3
Q ss_pred CCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcC
Q 037574 547 HEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKR 626 (961)
Q Consensus 547 ~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~ 626 (961)
.+++++|.+.++.+. .++ .+..+++|+.|++++|. +. . .+. +..+++|++|+|++|. +..+| .++.
T Consensus 40 l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~--i~-~-~~~-~~~l~~L~~L~L~~n~------l~~~~-~~~~ 105 (308)
T 1h6u_A 40 LDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQ--IT-D-LAP-LKNLTKITELELSGNP------LKNVS-AIAG 105 (308)
T ss_dssp HHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSC--CC-C-CGG-GTTCCSCCEEECCSCC------CSCCG-GGTT
T ss_pred cCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCc--CC-C-Chh-HccCCCCCEEEccCCc------CCCch-hhcC
Confidence 346777777777663 344 56777888888887775 22 2 222 7777888888888873 55554 4777
Q ss_pred CCCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcccccCCcCCCCCCCCCcCCc
Q 037574 627 LIHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLSYMPKGIERWSCLRTLSE 706 (961)
Q Consensus 627 l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~~~p~~i~~L~~L~~L~~ 706 (961)
+++|++|+|++|. +..+|. +..+++|++|++++|. +..+|. +..+++|++|++++|.+..++. +..+++|+.|.
T Consensus 106 l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~- 179 (308)
T 1h6u_A 106 LQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLK- 179 (308)
T ss_dssp CTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE-
T ss_pred CCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEE-
Confidence 8888888888887 777765 7778888888888776 666654 7777888888887777766655 55555544443
Q ss_pred eEecCCCCCCCCCChhhhhcccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHHHHhcCC
Q 037574 707 FIVSGGNDDKKASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAVVEGLE 786 (961)
Q Consensus 707 ~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~ 786 (961)
+..+... .+. .+..+++|+.|+++.|.... . ..+.
T Consensus 180 --l~~n~l~----~~~----------------------------~l~~l~~L~~L~L~~N~l~~-------~----~~l~ 214 (308)
T 1h6u_A 180 --ADDNKIS----DIS----------------------------PLASLPNLIEVHLKNNQISD-------V----SPLA 214 (308)
T ss_dssp --CCSSCCC----CCG----------------------------GGGGCTTCCEEECTTSCCCB-------C----GGGT
T ss_pred --CCCCccC----cCh----------------------------hhcCCCCCCEEEccCCccCc-------c----cccc
Confidence 2222210 000 13455677778887775532 0 1245
Q ss_pred CCCCcCceEEeeecCcc
Q 037574 787 LPSNLESMEMFYYRGES 803 (961)
Q Consensus 787 ~~~~L~~L~l~~~~~~~ 803 (961)
.+++|+.|+++++....
T Consensus 215 ~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 215 NTSNLFIVTLTNQTITN 231 (308)
T ss_dssp TCTTCCEEEEEEEEEEC
T ss_pred CCCCCCEEEccCCeeec
Confidence 66788888888887544
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.37 E-value=2.2e-12 Score=142.21 Aligned_cols=89 Identities=16% Similarity=0.269 Sum_probs=53.7
Q ss_pred CcccEEEccCCChhhhhhhcccch-hhcCCCCcceEeccCCCCcccCC-cchhccCCCcEeecCCCCCCcccc-cccccC
Q 037574 599 TCLRTLELSNHDNVLCKVIKKVPK-QIKRLIHLRYLNLSKNNKIKKLP-KTLCELYNLQTLELSWCSNLRNLP-QGMGKL 675 (961)
Q Consensus 599 ~~Lr~L~L~~~~~~~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lP-~~i~~L 675 (961)
++++.|+|++|. +..+|. .|.++++|++|+|++|...+.+| ..+.+|++|+.+...+++.+..+| ..+..+
T Consensus 30 ~~l~~L~Ls~N~------i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l 103 (350)
T 4ay9_X 30 RNAIELRFVLTK------LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNL 103 (350)
T ss_dssp TTCSEEEEESCC------CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCC
T ss_pred CCCCEEEccCCc------CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhc
Confidence 466777777763 666664 46677777777777776334455 345666666654443333466664 345667
Q ss_pred CCCcEEEeCCcccccCCc
Q 037574 676 INLRHVVNVGTPLSYMPK 693 (961)
Q Consensus 676 ~~L~~L~l~~~~l~~~p~ 693 (961)
++|++|++++|++..+|.
T Consensus 104 ~~L~~L~l~~n~l~~~~~ 121 (350)
T 4ay9_X 104 PNLQYLLISNTGIKHLPD 121 (350)
T ss_dssp TTCCEEEEEEECCSSCCC
T ss_pred cccccccccccccccCCc
Confidence 777777776666655543
No 94
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.36 E-value=5.3e-12 Score=134.82 Aligned_cols=144 Identities=23% Similarity=0.249 Sum_probs=113.4
Q ss_pred CCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcC
Q 037574 547 HEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKR 626 (961)
Q Consensus 547 ~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~ 626 (961)
..+++.+.+..+.+ ..+|..+. ++++.|++++|. +. .+.+..|..+++|++|+|++|. +..+|.. +.
T Consensus 9 l~~l~~l~~~~~~l-~~ip~~~~--~~l~~L~L~~N~--l~-~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~-~~ 75 (290)
T 1p9a_G 9 VASHLEVNCDKRNL-TALPPDLP--KDTTILHLSENL--LY-TFSLATLMPYTRLTQLNLDRAE------LTKLQVD-GT 75 (290)
T ss_dssp STTCCEEECTTSCC-SSCCSCCC--TTCCEEECTTSC--CS-EEEGGGGTTCTTCCEEECTTSC------CCEEECC-SC
T ss_pred cCCccEEECCCCCC-CcCCCCCC--CCCCEEEcCCCc--CC-ccCHHHhhcCCCCCEEECCCCc------cCcccCC-CC
Confidence 45677888877777 44554443 689999999887 43 4456678899999999999984 7777664 78
Q ss_pred CCCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccc-cccccCCCCcEEEeCCcccccCCcC-CCCCCCCCcC
Q 037574 627 LIHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLP-QGMGKLINLRHVVNVGTPLSYMPKG-IERWSCLRTL 704 (961)
Q Consensus 627 l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~l~~~p~~-i~~L~~L~~L 704 (961)
+++|++|+|++|. +..+|..+..+++|++|++++|. +..+| ..+..+++|++|++++|++..+|.+ +..+++|+.|
T Consensus 76 l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 76 LPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153 (290)
T ss_dssp CTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence 9999999999998 88999989999999999999987 77777 4588899999999999988888765 3556666655
Q ss_pred C
Q 037574 705 S 705 (961)
Q Consensus 705 ~ 705 (961)
.
T Consensus 154 ~ 154 (290)
T 1p9a_G 154 S 154 (290)
T ss_dssp E
T ss_pred E
Confidence 4
No 95
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.35 E-value=5.5e-11 Score=133.00 Aligned_cols=300 Identities=13% Similarity=0.022 Sum_probs=180.0
Q ss_pred CCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhh----cc--CceeEEEEeCCC
Q 037574 162 PLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVK----AN--FDKRIWVSASCP 235 (961)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~--F~~~~wv~~s~~ 235 (961)
+..++||+.+++++.+++.....+ ...+.+.|+|++|+||||||+.+++...-. .. ....+|++++..
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 92 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKN------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREV 92 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTT------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcC------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccC
Confidence 367999999999999887642111 345689999999999999999999842111 11 235678887766
Q ss_pred C-CHHHHHHHHHHHhcCCCC--CcccHHHHHHHHHHHhcCCceEEEeecccCCCChh-hHHH-HHHhccCCCCCcEEEEe
Q 037574 236 R-DEIRVAKAILESLKGSVS--SQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPR-YWEQ-LMYSLKSGSEGSRILVT 310 (961)
Q Consensus 236 ~-~~~~~~~~il~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~-~~~~-l~~~l~~~~~gs~ilvT 310 (961)
. +...++..++.++.+... ...+...+...+.+.+..++.+|||||++ ..... ..+. +...+... .+..||+|
T Consensus 93 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~-~l~~~~~~~~~l~~l~~~~-~~~~iI~~ 170 (384)
T 2qby_B 93 GGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVD-TLVKRRGGDIVLYQLLRSD-ANISVIMI 170 (384)
T ss_dssp CSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTH-HHHHSTTSHHHHHHHHTSS-SCEEEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHH-HhccCCCCceeHHHHhcCC-cceEEEEE
Confidence 6 788899999988843321 12334566777777787766699999995 11111 1222 22222222 67788999
Q ss_pred cCCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHc---CCCCCCCccchHHHHHHHHHhcC---CchH-H
Q 037574 311 RRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAF---DGRSSDDREKFEPIGRLVVGKCK---GLPF-A 383 (961)
Q Consensus 311 tR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~---~~~~~~~~~~l~~~~~~I~~~c~---G~PL-a 383 (961)
|+.......+... + ..... ..+.+++++.++..++|...+. .... .+ .+..+.|++.++ |.|- |
T Consensus 171 t~~~~~~~~l~~~-l--~sr~~-~~i~l~~l~~~~~~~il~~~~~~~~~~~~-~~----~~~~~~i~~~~~~~~G~~r~a 241 (384)
T 2qby_B 171 SNDINVRDYMEPR-V--LSSLG-PSVIFKPYDAEQLKFILSKYAEYGLIKGT-YD----DEILSYIAAISAKEHGDARKA 241 (384)
T ss_dssp CSSTTTTTTSCHH-H--HHTCC-CEEEECCCCHHHHHHHHHHHHHHTSCTTS-CC----SHHHHHHHHHHHTTCCCHHHH
T ss_pred ECCCchHhhhCHH-H--HhcCC-CeEEECCCCHHHHHHHHHHHHHhhcccCC-cC----HHHHHHHHHHHHhccCCHHHH
Confidence 9876432222110 0 00001 4899999999999999998753 2111 11 234566777777 9887 4
Q ss_pred HHHHHhhc--c---CCCCHHHHHHHhhhhhcccchhhhhccCCCCcchhhhHhhhcCCChHHHHHhhHhccCCCCcccCh
Q 037574 384 VKILGSLL--R---FKTSIEEWQSVLDSEIWNLDSKICKRAGVGDEYFSPLLLSYYDLSPALKKCFLYCSIFPKNYEIEK 458 (961)
Q Consensus 384 i~~~~~~l--~---~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~ 458 (961)
+..+-.+. . ..-+.+++..+++... ...+.-++..|+++.+..+..++....+-.+.
T Consensus 242 ~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~-----------------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~- 303 (384)
T 2qby_B 242 VNLLFRAAQLASGGGIIRKEHVDKAIVDYE-----------------QERLIEAVKALPFHYKLALRSLIESEDVMSAH- 303 (384)
T ss_dssp HHHHHHHHHHTTSSSCCCHHHHHHHHHHHH-----------------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-
T ss_pred HHHHHHHHHHhcCCCccCHHHHHHHHHHHh-----------------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-
Confidence 33333222 1 1245667766665421 12355677889988888777777611101111
Q ss_pred HHHHHHHHHcCcccccccccHHHHHHHHHHHHHhCCCCccccc
Q 037574 459 DRLIKLWMAQGYLKLLESEDMEVIGEEYFANLASRSLFQDFQK 501 (961)
Q Consensus 459 ~~Li~~W~a~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~ 501 (961)
+......-..| +. ........++++.|..++++.....
T Consensus 304 ~~~~~~~~~~g-~~----~~~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 304 KMYTDLCNKFK-QK----PLSYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp HHHHHHHHHTT-CC----CCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHcC-CC----CCCHHHHHHHHHHHHhCCCEEEEec
Confidence 11111111223 11 1123456788999999999987543
No 96
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.33 E-value=9.1e-12 Score=131.77 Aligned_cols=149 Identities=24% Similarity=0.403 Sum_probs=123.2
Q ss_pred cCCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccch-hh
Q 037574 546 SHEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPK-QI 624 (961)
Q Consensus 546 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~-~i 624 (961)
.+..+++|++..+.+....+..+..+++|++|++.++. +. .+.+..|..+++|++|+|++|. +..+|. .+
T Consensus 35 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~-~i~~~~~~~l~~L~~L~l~~n~------l~~~~~~~~ 105 (270)
T 2o6q_A 35 IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK--LQ-TLPAGIFKELKNLETLWVTDNK------LQALPIGVF 105 (270)
T ss_dssp CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC--CS-CCCTTTTSSCTTCCEEECCSSC------CCCCCTTTT
T ss_pred CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc--cC-eeChhhhcCCCCCCEEECCCCc------CCcCCHhHc
Confidence 45689999999999865555678999999999999986 33 4456668899999999999994 677764 56
Q ss_pred cCCCCcceEeccCCCCcccCC-cchhccCCCcEeecCCCCCCcccccc-cccCCCCcEEEeCCcccccCCcC-CCCCCCC
Q 037574 625 KRLIHLRYLNLSKNNKIKKLP-KTLCELYNLQTLELSWCSNLRNLPQG-MGKLINLRHVVNVGTPLSYMPKG-IERWSCL 701 (961)
Q Consensus 625 ~~l~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~l~~~p~~-i~~L~~L 701 (961)
..+++|++|+|++|. +..+| ..+..+++|++|++++|. +..+|.. +..+++|++|++++|.+..+|.. +..+++|
T Consensus 106 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 183 (270)
T 2o6q_A 106 DQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTEL 183 (270)
T ss_dssp TTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred ccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCc
Confidence 899999999999999 77776 457899999999999987 8888865 78899999999999999888764 5666666
Q ss_pred CcCC
Q 037574 702 RTLS 705 (961)
Q Consensus 702 ~~L~ 705 (961)
+.|.
T Consensus 184 ~~L~ 187 (270)
T 2o6q_A 184 KTLK 187 (270)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 6554
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.33 E-value=3e-12 Score=138.58 Aligned_cols=225 Identities=17% Similarity=0.164 Sum_probs=126.5
Q ss_pred CCccEEEeccCCCccccccchhh--hccCCcccEEEccCCChhhhhhhcccchhh--cCCCCcceEeccCCCCccc-CC-
Q 037574 572 KKLRSLGVEHGGGFMNGIVLSKV--FDQLTCLRTLELSNHDNVLCKVIKKVPKQI--KRLIHLRYLNLSKNNKIKK-LP- 645 (961)
Q Consensus 572 ~~Lr~L~l~~~~~~~~~~~~~~~--~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i--~~l~~Lr~L~L~~~~~i~~-lp- 645 (961)
..++.+.+.++. ......... +..+++|++|+|++| ......|..+ +.+++|++|+|++|. +.. .|
T Consensus 64 ~~l~~l~l~~~~--~~~~~~~~~~~~~~~~~L~~L~l~~n-----~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~ 135 (310)
T 4glp_A 64 LRVRRLTVGAAQ--VPAQLLVGALRVLAYSRLKELTLEDL-----KITGTMPPLPLEATGLALSSLRLRNVS-WATGRSW 135 (310)
T ss_dssp CCCCEEEECSCC--CBHHHHHHHHHHHHHSCCCEEEEESC-----CCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSS
T ss_pred cceeEEEEeCCc--CCHHHHHHHHHhcccCceeEEEeeCC-----EeccchhhhhhhccCCCCCEEEeeccc-ccchhhh
Confidence 346667766654 110111111 224466888888888 4234556666 788888889988888 553 33
Q ss_pred ---cchhccCCCcEeecCCCCCCcccc-cccccCCCCcEEEeCCccccc---CCc--CCCCCCCCCcCCceEecCCCCCC
Q 037574 646 ---KTLCELYNLQTLELSWCSNLRNLP-QGMGKLINLRHVVNVGTPLSY---MPK--GIERWSCLRTLSEFIVSGGNDDK 716 (961)
Q Consensus 646 ---~~i~~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~l~~---~p~--~i~~L~~L~~L~~~~~~~~~~~~ 716 (961)
..+..+++|++|++++|. +..+| ..+..+++|++|++++|++.. ++. .++.+++|++|.. ..+.
T Consensus 136 ~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L---s~N~--- 208 (310)
T 4glp_A 136 LAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLAL---RNTG--- 208 (310)
T ss_dssp HHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBC---CSSC---
T ss_pred hHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEEC---CCCC---
Confidence 234568888888888887 55554 567888888888888877542 222 2345555665542 2221
Q ss_pred CCCChhhhhcccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHHHHhcCCCCCCcCceEE
Q 037574 717 KASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAVVEGLELPSNLESMEM 796 (961)
Q Consensus 717 ~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l 796 (961)
+.. ........+..+++|+.|++++|...... ...+..+..+++|++|++
T Consensus 209 ----l~~--------------------l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~------p~~~~~~~~~~~L~~L~L 258 (310)
T 4glp_A 209 ----MET--------------------PTGVCAALAAAGVQPHSLDLSHNSLRATV------NPSAPRCMWSSALNSLNL 258 (310)
T ss_dssp ----CCC--------------------HHHHHHHHHHHTCCCSSEECTTSCCCCCC------CSCCSSCCCCTTCCCEEC
T ss_pred ----CCc--------------------hHHHHHHHHhcCCCCCEEECCCCCCCccc------hhhHHhccCcCcCCEEEC
Confidence 000 01111111244567777777776543100 000112222356777777
Q ss_pred eeecCccccccccccccCceEEEEeCCCCCCcCCCCCCCCccceeeecc
Q 037574 797 FYYRGESISLMMIMLSNKLRSLTLDRCVNLKQLPGLGGLPSLESLTLRN 845 (961)
Q Consensus 797 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~ 845 (961)
+++....++.. .+++|+.|+|++| .+..+|.+..+++|+.|+|++
T Consensus 259 s~N~l~~lp~~---~~~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 259 SFAGLEQVPKG---LPAKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDG 303 (310)
T ss_dssp CSSCCCSCCSC---CCSCCSCEECCSC-CCCSCCCTTSCCCCSCEECSS
T ss_pred CCCCCCchhhh---hcCCCCEEECCCC-cCCCCchhhhCCCccEEECcC
Confidence 66665544111 1256777777666 344555566667777777765
No 98
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.32 E-value=1.1e-11 Score=129.52 Aligned_cols=149 Identities=26% Similarity=0.345 Sum_probs=110.9
Q ss_pred cCCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccc-hhh
Q 037574 546 SHEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVP-KQI 624 (961)
Q Consensus 546 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp-~~i 624 (961)
.+..++.|.+.++.+....+..+..+++|++|++++|. +. .+.+..|..+++|++|+|++|. +..+| ..+
T Consensus 33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~-~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~ 103 (251)
T 3m19_A 33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ--LQ-TLSAGVFDDLTELGTLGLANNQ------LASLPLGVF 103 (251)
T ss_dssp CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC--CC-CCCTTTTTTCTTCCEEECTTSC------CCCCCTTTT
T ss_pred CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc--CC-ccCHhHhccCCcCCEEECCCCc------ccccChhHh
Confidence 45678888888888766556677888888888888876 33 3455567888888888888883 55655 456
Q ss_pred cCCCCcceEeccCCCCcccCCcc-hhccCCCcEeecCCCCCCccccc-ccccCCCCcEEEeCCcccccCCc-CCCCCCCC
Q 037574 625 KRLIHLRYLNLSKNNKIKKLPKT-LCELYNLQTLELSWCSNLRNLPQ-GMGKLINLRHVVNVGTPLSYMPK-GIERWSCL 701 (961)
Q Consensus 625 ~~l~~Lr~L~L~~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~l~~~p~-~i~~L~~L 701 (961)
..+++|++|+|++|. ++.+|.. +..+++|++|++++|. +..+|. .+..+++|++|++++|.+..+|. .+..+++|
T Consensus 104 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 181 (251)
T 3m19_A 104 DHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL 181 (251)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred cccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCC
Confidence 788888888888887 7777754 5788888888888876 777775 47788888888888888887765 35555555
Q ss_pred CcCC
Q 037574 702 RTLS 705 (961)
Q Consensus 702 ~~L~ 705 (961)
+.|.
T Consensus 182 ~~L~ 185 (251)
T 3m19_A 182 QTIT 185 (251)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 5543
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.31 E-value=7.1e-12 Score=125.62 Aligned_cols=143 Identities=13% Similarity=0.195 Sum_probs=117.2
Q ss_pred CCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhc-ccchhhc
Q 037574 547 HEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIK-KVPKQIK 625 (961)
Q Consensus 547 ~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~-~lp~~i~ 625 (961)
..+++++.+.++.+. .+| .+..+++|++|++.+|. .. .+ ..+..+++|++|++++| . +. ..|..++
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~--~~--~~-~~l~~l~~L~~L~l~~n-----~-l~~~~~~~l~ 109 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIH--AT--NY-NPISGLSNLERLRIMGK-----D-VTSDKIPNLS 109 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCC--CS--CC-GGGTTCTTCCEEEEECT-----T-CBGGGSCCCT
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCC--CC--cc-hhhhcCCCCCEEEeECC-----c-cCcccChhhc
Confidence 357899999999884 556 68899999999999985 22 12 35888999999999998 4 44 3678899
Q ss_pred CCCCcceEeccCCCCcc-cCCcchhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcccccCCcCCCCCCCCCcC
Q 037574 626 RLIHLRYLNLSKNNKIK-KLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLSYMPKGIERWSCLRTL 704 (961)
Q Consensus 626 ~l~~Lr~L~L~~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~~~p~~i~~L~~L~~L 704 (961)
.+++|++|+|++|. +. ..|..++.+++|++|++++|..+..+| .+..+++|++|++++|.+..++ .+..+++|+.|
T Consensus 110 ~l~~L~~L~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L 186 (197)
T 4ezg_A 110 GLTSLTLLDISHSA-HDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQL 186 (197)
T ss_dssp TCTTCCEEECCSSB-CBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEE
T ss_pred CCCCCCEEEecCCc-cCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEE
Confidence 99999999999998 65 477889999999999999987678887 7899999999999999888776 56666666665
Q ss_pred C
Q 037574 705 S 705 (961)
Q Consensus 705 ~ 705 (961)
.
T Consensus 187 ~ 187 (197)
T 4ezg_A 187 Y 187 (197)
T ss_dssp E
T ss_pred E
Confidence 4
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.31 E-value=4.8e-12 Score=135.30 Aligned_cols=83 Identities=25% Similarity=0.299 Sum_probs=47.5
Q ss_pred cCCcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccccccccCC
Q 037574 597 QLTCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLI 676 (961)
Q Consensus 597 ~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~ 676 (961)
.+++|+.|++++|. +..++. ++.+++|++|+|++|. +..+|. +.++++|++|++++|. +..+| .+..++
T Consensus 44 ~l~~L~~L~l~~~~------i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~ 112 (291)
T 1h6t_A 44 ELNSIDQIIANNSD------IKSVQG-IQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENK-VKDLS-SLKDLK 112 (291)
T ss_dssp HHHTCCEEECTTSC------CCCCTT-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCGG-GGTTCT
T ss_pred hcCcccEEEccCCC------cccChh-HhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCc-CCCCh-hhccCC
Confidence 45556666666652 444432 5556666666666665 555555 6666666666666655 55444 255666
Q ss_pred CCcEEEeCCccccc
Q 037574 677 NLRHVVNVGTPLSY 690 (961)
Q Consensus 677 ~L~~L~l~~~~l~~ 690 (961)
+|++|++++|.+..
T Consensus 113 ~L~~L~L~~n~i~~ 126 (291)
T 1h6t_A 113 KLKSLSLEHNGISD 126 (291)
T ss_dssp TCCEEECTTSCCCC
T ss_pred CCCEEECCCCcCCC
Confidence 66666665555444
No 101
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.30 E-value=6.8e-12 Score=135.75 Aligned_cols=156 Identities=15% Similarity=0.039 Sum_probs=117.0
Q ss_pred CCccEEEEEeccCCCCCcccc--cCCCCccEEEeccCCCcccccc--c-hhhhccCCcccEEEccCCChhhhhhhccc-c
Q 037574 548 EKFPHLMITFESDQGAFPNSV--YNQKKLRSLGVEHGGGFMNGIV--L-SKVFDQLTCLRTLELSNHDNVLCKVIKKV-P 621 (961)
Q Consensus 548 ~~~r~l~l~~~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~~--~-~~~~~~l~~Lr~L~L~~~~~~~~~~~~~l-p 621 (961)
.++++|.+.+|.+....|..+ ..+++|++|++++|. +.... . ...+..+++|++|+|++| . +..+ |
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~--i~~~~~~~~~~~~~~~~~L~~L~Ls~n-----~-l~~~~~ 162 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS--WATGRSWLAELQQWLKPGLKVLSIAQA-----H-SPAFSC 162 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC--CSSTTSSHHHHHTTBCSCCCEEEEECC-----S-SCCCCT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc--ccchhhhhHHHHhhhccCCCEEEeeCC-----C-cchhhH
Confidence 458999999998877777776 889999999999987 22111 1 133457999999999999 4 5555 4
Q ss_pred hhhcCCCCcceEeccCCCCccc---CC--cchhccCCCcEeecCCCCCCcccccc----cccCCCCcEEEeCCcccccC-
Q 037574 622 KQIKRLIHLRYLNLSKNNKIKK---LP--KTLCELYNLQTLELSWCSNLRNLPQG----MGKLINLRHVVNVGTPLSYM- 691 (961)
Q Consensus 622 ~~i~~l~~Lr~L~L~~~~~i~~---lp--~~i~~L~~L~~L~l~~~~~l~~lP~~----i~~L~~L~~L~l~~~~l~~~- 691 (961)
..++.+++|++|+|++|. +.. +| ..+..+++|++|++++|. +..+|.. +..+++|++|++++|.+...
T Consensus 163 ~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 240 (310)
T 4glp_A 163 EQVRAFPALTSLDLSDNP-GLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATV 240 (310)
T ss_dssp TSCCCCTTCCEEECCSCT-TCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCC
T ss_pred HHhccCCCCCEEECCCCC-CccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccc
Confidence 678899999999999998 432 33 334789999999999987 7766653 46789999999999998876
Q ss_pred CcCCCCCCCCCcCCceEecCCC
Q 037574 692 PKGIERWSCLRTLSEFIVSGGN 713 (961)
Q Consensus 692 p~~i~~L~~L~~L~~~~~~~~~ 713 (961)
|..++.+..+..|....++.+.
T Consensus 241 p~~~~~~~~~~~L~~L~Ls~N~ 262 (310)
T 4glp_A 241 NPSAPRCMWSSALNSLNLSFAG 262 (310)
T ss_dssp CSCCSSCCCCTTCCCEECCSSC
T ss_pred hhhHHhccCcCcCCEEECCCCC
Confidence 7777777544455544455443
No 102
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.30 E-value=3e-12 Score=135.70 Aligned_cols=112 Identities=26% Similarity=0.408 Sum_probs=68.7
Q ss_pred ccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcccCCc-
Q 037574 568 VYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKKLPK- 646 (961)
Q Consensus 568 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~- 646 (961)
...+++|+.|.+.++. +. . ++ .+..+++|++|+|++|. +..++ .++.+++|++|+|++|. +..+|.
T Consensus 37 ~~~l~~L~~L~l~~~~--i~-~-~~-~l~~l~~L~~L~l~~n~------l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~ 103 (272)
T 3rfs_A 37 QNELNSIDQIIANNSD--IK-S-VQ-GIQYLPNVRYLALGGNK------LHDIS-ALKELTNLTYLILTGNQ-LQSLPNG 103 (272)
T ss_dssp HHHHTTCCEEECTTSC--CC-C-CT-TGGGCTTCCEEECTTSC------CCCCG-GGTTCTTCCEEECTTSC-CCCCCTT
T ss_pred cccccceeeeeeCCCC--cc-c-cc-ccccCCCCcEEECCCCC------CCCch-hhcCCCCCCEEECCCCc-cCccChh
Confidence 4456667777776654 21 1 12 25667777777777763 44443 56677777777777776 555553
Q ss_pred chhccCCCcEeecCCCCCCcccccc-cccCCCCcEEEeCCcccccCCc
Q 037574 647 TLCELYNLQTLELSWCSNLRNLPQG-MGKLINLRHVVNVGTPLSYMPK 693 (961)
Q Consensus 647 ~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~l~~~p~ 693 (961)
.+.++++|++|++++|. +..+|.. +..+++|++|++++|.+..+|.
T Consensus 104 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 150 (272)
T 3rfs_A 104 VFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPK 150 (272)
T ss_dssp TTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred HhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCH
Confidence 35667777777777765 5555543 5667777777776666655544
No 103
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.29 E-value=4.5e-13 Score=150.12 Aligned_cols=247 Identities=15% Similarity=0.119 Sum_probs=135.2
Q ss_pred CCcccccCCCCccEEEeccCCCccccc---cchhhhccCCcccEEEccCCChhh-----hhhhcccchhhcCCCCcceEe
Q 037574 563 AFPNSVYNQKKLRSLGVEHGGGFMNGI---VLSKVFDQLTCLRTLELSNHDNVL-----CKVIKKVPKQIKRLIHLRYLN 634 (961)
Q Consensus 563 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~---~~~~~~~~l~~Lr~L~L~~~~~~~-----~~~~~~lp~~i~~l~~Lr~L~ 634 (961)
.++..+..+++|++|++++|. +... .+...+.++++|++|+|++|.... ...+..+...+..+++|++|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~--i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNT--IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSE--ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHhcCCCccEEECCCCC--CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 345566777888888888875 2211 122346678888888888863100 001222233347788888888
Q ss_pred ccCCCCccc-----CCcchhccCCCcEeecCCCCCCc-----ccccccccC---------CCCcEEEeCCcccc--cCC-
Q 037574 635 LSKNNKIKK-----LPKTLCELYNLQTLELSWCSNLR-----NLPQGMGKL---------INLRHVVNVGTPLS--YMP- 692 (961)
Q Consensus 635 L~~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~l~-----~lP~~i~~L---------~~L~~L~l~~~~l~--~~p- 692 (961)
|++|. +.. +|..+..+++|++|++++|. +. .++..+..+ ++|++|++++|.+. .+|
T Consensus 101 Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 178 (386)
T 2ca6_A 101 LSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178 (386)
T ss_dssp CCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred CCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH
Confidence 88887 554 67778888888888888877 43 233334444 78888888777654 222
Q ss_pred --cCCCCCCCCCcCCceEecCCCCCCCCCChhhhhcccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCC
Q 037574 693 --KGIERWSCLRTLSEFIVSGGNDDKKASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDE 770 (961)
Q Consensus 693 --~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 770 (961)
..+..+++|++|. +..+. +. ...........+..+++|+.|+|++|....
T Consensus 179 l~~~l~~~~~L~~L~---L~~n~-------l~------------------~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~ 230 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVK---MVQNG-------IR------------------PEGIEHLLLEGLAYCQELKVLDLQDNTFTH 230 (386)
T ss_dssp HHHHHHHCTTCCEEE---CCSSC-------CC------------------HHHHHHHHHTTGGGCTTCCEEECCSSCCHH
T ss_pred HHHHHHhCCCcCEEE---CcCCC-------CC------------------HhHHHHHHHHHhhcCCCccEEECcCCCCCc
Confidence 1122222222222 11111 00 000001122245666777777777765320
Q ss_pred cCCCccchHHHHhcCCCCCCcCceEEeeecCccc------cccccccccCceEEEEeCCCCCC----cCCC-C-CCCCcc
Q 037574 771 EGRKKEDDEAVVEGLELPSNLESMEMFYYRGESI------SLMMIMLSNKLRSLTLDRCVNLK----QLPG-L-GGLPSL 838 (961)
Q Consensus 771 ~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~------~~~~~~~l~~L~~L~L~~~~~~~----~l~~-l-~~lp~L 838 (961)
.....+...+..+++|++|++++|..... .++....+++|++|+|++|.... .+|. + ..+|+|
T Consensus 231 -----~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L 305 (386)
T 2ca6_A 231 -----LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 305 (386)
T ss_dssp -----HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTC
T ss_pred -----HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCc
Confidence 00123344555566777777777665432 11111236677777777774322 1442 3 346777
Q ss_pred ceeeeccc
Q 037574 839 ESLTLRNM 846 (961)
Q Consensus 839 ~~L~L~~~ 846 (961)
++|++++|
T Consensus 306 ~~L~l~~N 313 (386)
T 2ca6_A 306 LFLELNGN 313 (386)
T ss_dssp CEEECTTS
T ss_pred eEEEccCC
Confidence 77777764
No 104
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.29 E-value=5e-12 Score=133.95 Aligned_cols=144 Identities=23% Similarity=0.398 Sum_probs=114.6
Q ss_pred CCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccch-hhc
Q 037574 547 HEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPK-QIK 625 (961)
Q Consensus 547 ~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~-~i~ 625 (961)
...++.+.+..+.+. .+ ..+..+++|+.|++.+|. +. . + ..+..+++|++|+|++| . +..+|. .++
T Consensus 40 l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~--l~-~-~-~~l~~l~~L~~L~L~~n-----~-l~~~~~~~~~ 106 (272)
T 3rfs_A 40 LNSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNK--LH-D-I-SALKELTNLTYLILTGN-----Q-LQSLPNGVFD 106 (272)
T ss_dssp HTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSC--CC-C-C-GGGTTCTTCCEEECTTS-----C-CCCCCTTTTT
T ss_pred ccceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCC--CC-C-c-hhhcCCCCCCEEECCCC-----c-cCccChhHhc
Confidence 567899999888773 33 357889999999999987 33 2 2 35889999999999999 4 666654 478
Q ss_pred CCCCcceEeccCCCCcccCCc-chhccCCCcEeecCCCCCCcccccc-cccCCCCcEEEeCCcccccCCcC-CCCCCCCC
Q 037574 626 RLIHLRYLNLSKNNKIKKLPK-TLCELYNLQTLELSWCSNLRNLPQG-MGKLINLRHVVNVGTPLSYMPKG-IERWSCLR 702 (961)
Q Consensus 626 ~l~~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~l~~~p~~-i~~L~~L~ 702 (961)
.+++|++|+|++|. +..+|. .++.+++|++|++++|. +..+|.. +..+++|++|++++|.+..+|.. ++.+++|+
T Consensus 107 ~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 184 (272)
T 3rfs_A 107 KLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK 184 (272)
T ss_dssp TCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCC
Confidence 99999999999999 777775 47899999999999987 7788765 58899999999999988877664 45566665
Q ss_pred cCC
Q 037574 703 TLS 705 (961)
Q Consensus 703 ~L~ 705 (961)
.|.
T Consensus 185 ~L~ 187 (272)
T 3rfs_A 185 DLR 187 (272)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.28 E-value=5.7e-12 Score=148.01 Aligned_cols=83 Identities=25% Similarity=0.300 Sum_probs=40.7
Q ss_pred cCCcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccccccccCC
Q 037574 597 QLTCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLI 676 (961)
Q Consensus 597 ~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~ 676 (961)
.+++|+.|+|++|. +..+| .++.|++|++|+|++|. +..+|. +..+++|+.|+|++|. +..+| .+..++
T Consensus 41 ~L~~L~~L~l~~n~------i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~ 109 (605)
T 1m9s_A 41 ELNSIDQIIANNSD------IKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLK 109 (605)
T ss_dssp HHTTCCCCBCTTCC------CCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCT
T ss_pred cCCCCCEEECcCCC------CCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCC
Confidence 44445555555542 34443 24555555555555554 444444 5555555555555544 44443 445555
Q ss_pred CCcEEEeCCccccc
Q 037574 677 NLRHVVNVGTPLSY 690 (961)
Q Consensus 677 ~L~~L~l~~~~l~~ 690 (961)
+|++|+++.|.+..
T Consensus 110 ~L~~L~Ls~N~l~~ 123 (605)
T 1m9s_A 110 KLKSLSLEHNGISD 123 (605)
T ss_dssp TCCEEECTTSCCCC
T ss_pred CCCEEEecCCCCCC
Confidence 55555555444433
No 106
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.28 E-value=1.7e-11 Score=134.93 Aligned_cols=54 Identities=26% Similarity=0.234 Sum_probs=40.2
Q ss_pred CCcCceEEeeecCccccccccccccCceEEEEeCCCCCCcCCCCCCCCccceeeecc
Q 037574 789 SNLESMEMFYYRGESISLMMIMLSNKLRSLTLDRCVNLKQLPGLGGLPSLESLTLRN 845 (961)
Q Consensus 789 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~ 845 (961)
++|+.|+++++....++. ..+.+|++|.+.++..++.+|.+..|++|+.+++.+
T Consensus 202 ~~L~~LdLs~N~l~~lp~---~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 202 SGPVILDISRTRIHSLPS---YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp ECCSEEECTTSCCCCCCS---SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred cccchhhcCCCCcCccCh---hhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 455666666555444421 247789999998888899999999999999999875
No 107
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.28 E-value=1e-12 Score=147.14 Aligned_cols=241 Identities=14% Similarity=0.119 Sum_probs=158.8
Q ss_pred CCCccEEEEEeccCCCC----CcccccCCCCccEEEeccCCC-ccccccc------hhhhccCCcccEEEccCCChhhhh
Q 037574 547 HEKFPHLMITFESDQGA----FPNSVYNQKKLRSLGVEHGGG-FMNGIVL------SKVFDQLTCLRTLELSNHDNVLCK 615 (961)
Q Consensus 547 ~~~~r~l~l~~~~~~~~----~~~~~~~~~~Lr~L~l~~~~~-~~~~~~~------~~~~~~l~~Lr~L~L~~~~~~~~~ 615 (961)
.+++++|.+++|.+... ++..+..+++|++|+++++.. .+...++ ...+..+++|++|+|++|..- ..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~-~~ 109 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG-PT 109 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC-TT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC-HH
Confidence 46799999999877532 233477899999999998741 1111111 223578999999999999410 00
Q ss_pred hhcccchhhcCCCCcceEeccCCCCccc-----CCcchhcc---------CCCcEeecCCCCCCc--ccc---cccccCC
Q 037574 616 VIKKVPKQIKRLIHLRYLNLSKNNKIKK-----LPKTLCEL---------YNLQTLELSWCSNLR--NLP---QGMGKLI 676 (961)
Q Consensus 616 ~~~~lp~~i~~l~~Lr~L~L~~~~~i~~-----lp~~i~~L---------~~L~~L~l~~~~~l~--~lP---~~i~~L~ 676 (961)
....+|..+..+++|++|+|++|. +.. ++..+..+ ++|++|++++|. +. .+| ..+..++
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQSHR 187 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHHHHHhCC
Confidence 112478889999999999999998 652 44445555 999999999987 53 455 5677899
Q ss_pred CCcEEEeCCcccc------cCCcCCCCCCCCCcCCceEecCCCCCCCCCChhhhhcccccCCceeEcCCCCCChhhhHhh
Q 037574 677 NLRHVVNVGTPLS------YMPKGIERWSCLRTLSEFIVSGGNDDKKASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKA 750 (961)
Q Consensus 677 ~L~~L~l~~~~l~------~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~ 750 (961)
+|++|++++|.+. -.|..+..+++|+.|. ++.+. +.. .....+..
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~---Ls~n~-------l~~-------------------~g~~~l~~ 238 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLD---LQDNT-------FTH-------------------LGSSALAI 238 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEE---CCSSC-------CHH-------------------HHHHHHHH
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEE---CcCCC-------CCc-------------------HHHHHHHH
Confidence 9999999988776 1222444555555443 22221 000 00123344
Q ss_pred ccccccccCceeEEecCCCCcCCCccchHHHHhcC--CCCCCcCceEEeeecCcc-----c-cccccccccCceEEEEeC
Q 037574 751 ELSKREKLLALGISFDRDDEEGRKKEDDEAVVEGL--ELPSNLESMEMFYYRGES-----I-SLMMIMLSNKLRSLTLDR 822 (961)
Q Consensus 751 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l--~~~~~L~~L~l~~~~~~~-----~-~~~~~~~l~~L~~L~L~~ 822 (961)
.+..+++|+.|+|++|.... .....+...+ ..+++|+.|++++|.... + .++ ...+++|++|+|++
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~-----~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l-~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSA-----RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI-DEKMPDLLFLELNG 312 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCH-----HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH-HHHCTTCCEEECTT
T ss_pred HHccCCCcCEEECCCCCCch-----hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH-HhcCCCceEEEccC
Confidence 56677889999998886541 0112234454 336899999999988765 3 222 12579999999999
Q ss_pred CCC
Q 037574 823 CVN 825 (961)
Q Consensus 823 ~~~ 825 (961)
|..
T Consensus 313 N~l 315 (386)
T 2ca6_A 313 NRF 315 (386)
T ss_dssp SBS
T ss_pred CcC
Confidence 853
No 108
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.26 E-value=9.5e-12 Score=121.18 Aligned_cols=135 Identities=23% Similarity=0.262 Sum_probs=90.0
Q ss_pred cCCCccEEEEEeccCC-CCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcc-cchh
Q 037574 546 SHEKFPHLMITFESDQ-GAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKK-VPKQ 623 (961)
Q Consensus 546 ~~~~~r~l~l~~~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~-lp~~ 623 (961)
.++++++|.+.+|.+. ..+|..+..+++|+.|++.+|. +. . . ..+..+++|++|+|++| . +.. +|..
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~--l~-~-~-~~~~~l~~L~~L~Ls~N-----~-l~~~~~~~ 90 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG--LI-S-V-SNLPKLPKLKKLELSEN-----R-IFGGLDML 90 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC--CC-C-C-SSCCCCSSCCEEEEESC-----C-CCSCCCHH
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC--CC-C-h-hhhccCCCCCEEECcCC-----c-CchHHHHH
Confidence 4567777887777764 3556666677777777777765 22 1 1 44666777777777777 3 444 5666
Q ss_pred hcCCCCcceEeccCCCCcccCC--cchhccCCCcEeecCCCCCCccccc----ccccCCCCcEEEeCCcccccCCc
Q 037574 624 IKRLIHLRYLNLSKNNKIKKLP--KTLCELYNLQTLELSWCSNLRNLPQ----GMGKLINLRHVVNVGTPLSYMPK 693 (961)
Q Consensus 624 i~~l~~Lr~L~L~~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lP~----~i~~L~~L~~L~l~~~~l~~~p~ 693 (961)
+..+++|++|+|++|. ++.+| ..+..+++|++|++++|. +..+|. .+..+++|++|++..|.+..+|.
T Consensus 91 ~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp HHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred HhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 6667777777777776 66665 567777777777777765 666665 56667777777776666665554
No 109
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.26 E-value=1.1e-10 Score=130.59 Aligned_cols=304 Identities=15% Similarity=0.094 Sum_probs=178.3
Q ss_pred CCCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccC---ceeEEEEeCCCCC
Q 037574 161 DPLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANF---DKRIWVSASCPRD 237 (961)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~~~~ 237 (961)
.+..|+||+.+++.+.+++.....+ .....+.|+|++|+||||||+.+++. ....+ ...+|+++....+
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~------~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~ 89 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYRE------EKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDT 89 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGT------CCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCS
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcC------CCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCC
Confidence 3467999999999999988742110 34568999999999999999999983 43332 2567787766667
Q ss_pred HHHHHHHHHHHhcCCCC-CcccHHHHHHHHHHHhc--CCceEEEeecccCCC---ChhhHHHHHHhccC-CCCCcEEEEe
Q 037574 238 EIRVAKAILESLKGSVS-SQVEMETVLQYINEFVQ--GKKVLLVLDDVWWNA---CPRYWEQLMYSLKS-GSEGSRILVT 310 (961)
Q Consensus 238 ~~~~~~~il~~l~~~~~-~~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~---~~~~~~~l~~~l~~-~~~gs~ilvT 310 (961)
...++..++.+++.... ...+..++...+.+.+. +++.+||+|+++.-. +.+.+..+...+.. ...+..+|+|
T Consensus 90 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~ 169 (386)
T 2qby_A 90 PYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGI 169 (386)
T ss_dssp HHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEE
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEE
Confidence 77888888887755332 12335555666666664 458999999996210 13344445444432 2345567888
Q ss_pred cCCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcC---CchHHHHHH
Q 037574 311 RRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCK---GLPFAVKIL 387 (961)
Q Consensus 311 tR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~---G~PLai~~~ 387 (961)
|+.......+... . ..+.....+.+++++.++..+++.+.+..... ...--.++.+.|++.++ |.|..+..+
T Consensus 170 ~~~~~~~~~~~~~-~--~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~G~~r~~~~l 244 (386)
T 2qby_A 170 TNDVKFVDLLDPR-V--KSSLSEEEIIFPPYNAEELEDILTKRAQMAFK--PGVLPDNVIKLCAALAAREHGDARRALDL 244 (386)
T ss_dssp ESCGGGGGGCTTH-H--HHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC--SSCSCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred ECCCChHhhhCHH-H--hccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc--CCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 8766533222111 0 00111147999999999999999886421110 01122345667777777 999844333
Q ss_pred Hh-hcc-----C--CCCHHHHHHHhhhhhcccchhhhhccCCCCcchhhhHhhhcCCChHHHHHhhHhccCCC-C-cccC
Q 037574 388 GS-LLR-----F--KTSIEEWQSVLDSEIWNLDSKICKRAGVGDEYFSPLLLSYYDLSPALKKCFLYCSIFPK-N-YEIE 457 (961)
Q Consensus 388 ~~-~l~-----~--~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~a~fp~-~-~~i~ 457 (961)
.. +.. . .-+.+++..++.... ...+.-++..+|...+..+..++.+.+ + ..+.
T Consensus 245 l~~a~~~a~~~~~~~i~~~~v~~a~~~~~-----------------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~ 307 (386)
T 2qby_A 245 LRVSGEIAERMKDTKVKEEYVYMAKEEIE-----------------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVST 307 (386)
T ss_dssp HHHHHHHHHHTTCSSCCHHHHHHHHHHHH-----------------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEE
T ss_pred HHHHHHHHHhcCCCccCHHHHHHHHHHHh-----------------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCcee
Confidence 22 211 1 134455554443311 123555677888888887776663221 2 2234
Q ss_pred hHHHHHHHH----HcCcccccccccHHHHHHHHHHHHHhCCCCccc
Q 037574 458 KDRLIKLWM----AQGYLKLLESEDMEVIGEEYFANLASRSLFQDF 499 (961)
Q Consensus 458 ~~~Li~~W~----a~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 499 (961)
...+.+... ..| +.. ........+++.|...+++...
T Consensus 308 ~~~l~~~~~~~~~~~g-~~~----~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 308 TGAVYETYLNICKKLG-VEA----VTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HHHHHHHHHHHHHHHT-CCC----CCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHHhcC-CCC----CCHHHHHHHHHHHHhCCCEEEE
Confidence 443433221 112 111 1123456789999999999764
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.26 E-value=2.4e-11 Score=124.89 Aligned_cols=139 Identities=24% Similarity=0.398 Sum_probs=96.3
Q ss_pred EEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccch-hhcCCCCc
Q 037574 552 HLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPK-QIKRLIHL 630 (961)
Q Consensus 552 ~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~-~i~~l~~L 630 (961)
.++...+.+ ..+|..+ .++|+.|++++|. +. .+.+..|..+++|++|+|++| . +..+|. .+..+++|
T Consensus 23 ~v~c~~~~l-~~ip~~~--~~~L~~L~Ls~n~--i~-~~~~~~~~~l~~L~~L~L~~N-----~-l~~i~~~~~~~l~~L 90 (229)
T 3e6j_A 23 TVDCRSKRH-ASVPAGI--PTNAQILYLHDNQ--IT-KLEPGVFDSLINLKELYLGSN-----Q-LGALPVGVFDSLTQL 90 (229)
T ss_dssp EEECTTSCC-SSCCSCC--CTTCSEEECCSSC--CC-CCCTTTTTTCTTCCEEECCSS-----C-CCCCCTTTTTTCTTC
T ss_pred EeEccCCCc-CccCCCC--CCCCCEEEcCCCc--cC-ccCHHHhhCccCCcEEECCCC-----C-CCCcChhhcccCCCc
Confidence 344444444 3445433 2778888888776 33 334566778888888888887 3 666664 35778888
Q ss_pred ceEeccCCCCcccCCcc-hhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcccccCCcC-CCCCCCCCcC
Q 037574 631 RYLNLSKNNKIKKLPKT-LCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLSYMPKG-IERWSCLRTL 704 (961)
Q Consensus 631 r~L~L~~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~~~p~~-i~~L~~L~~L 704 (961)
++|+|++|. ++.+|.. +..+++|++|++++|. +..+|..+..+++|++|++++|++..+|.. +..+++|+.|
T Consensus 91 ~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 91 TVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA 164 (229)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CEEECCCCc-CCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence 888888887 7777644 5778888888888876 778888888888888888888888777753 4555555544
No 111
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.25 E-value=1.8e-10 Score=119.93 Aligned_cols=197 Identities=13% Similarity=0.140 Sum_probs=120.5
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVA 242 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 242 (961)
..++||+..++.+..++... ...+.+.|+|++|+||||||+.+++. ....+.... ..+... .. .
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~---------~~~~~~ll~G~~G~GKT~l~~~~~~~--~~~~~~~~~-~~~~~~---~~-~ 86 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLG---------RIHHAYLFSGTRGVGKTSIARLLAKG--LNCETGITA-TPCGVC---DN-C 86 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHT---------CCCSEEEEECSTTSCHHHHHHHHHHH--HHCTTCSCS-SCCSCS---HH-H
T ss_pred HHHhCcHHHHHHHHHHHHcC---------CCCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCCCC-CCCccc---HH-H
Confidence 46999999999999998753 22358999999999999999999873 222111000 000000 00 0
Q ss_pred HHHHHHhc-----CCCCCcccHHHHHHHHHHH-----hcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecC
Q 037574 243 KAILESLK-----GSVSSQVEMETVLQYINEF-----VQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRR 312 (961)
Q Consensus 243 ~~il~~l~-----~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR 312 (961)
..+..... .........+.+. .+.+. ..+++.+||+||++ ..+...++.+...+.....+..+|+||+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vlviDe~~-~l~~~~~~~l~~~l~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPARGRFKVYLIDEVH-MLSRHSFNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp HHHHTTCCSSEEEEETTCGGGHHHHH-HHHHSCCCSCSSSSSEEEEEETGG-GSCHHHHHHHHHHHHSCCTTEEEEEEES
T ss_pred HHHhccCCcceEEecCcccccHHHHH-HHHHHhhhchhcCCceEEEEECcc-cccHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 00000000 0000011112221 12222 13568999999996 4456778888887776666788888887
Q ss_pred CCcccc-cccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHHHhh
Q 037574 313 GEKNGT-NMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKILGSL 390 (961)
Q Consensus 313 ~~~v~~-~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~~~~ 390 (961)
...... .+. .+...+.+.+++.++..+++.+.+...... --.+..+.|++.|+|.|..+..+...
T Consensus 165 ~~~~~~~~l~---------~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 165 DPQKLPVTIL---------SRCLQFHLKALDVEQIRHQLEHILNEEHIA----HEPRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp CGGGSCHHHH---------TTSEEEECCCCCHHHHHHHHHHHHHHTTCC----BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChHhCCHHHH---------HHhhhccCCCCCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 654221 111 112689999999999999999876432221 12345778999999999988877653
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.23 E-value=5.1e-11 Score=122.40 Aligned_cols=135 Identities=24% Similarity=0.366 Sum_probs=115.4
Q ss_pred CcCCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchh-
Q 037574 545 SSHEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQ- 623 (961)
Q Consensus 545 ~~~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~- 623 (961)
..+.++++|.+++|.+....+..+..+++|+.|++.+|. +. .+.+..|..+++|++|+|++|. +..+|..
T Consensus 37 ~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~--l~-~i~~~~~~~l~~L~~L~Ls~N~------l~~l~~~~ 107 (229)
T 3e6j_A 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ--LG-ALPVGVFDSLTQLTVLDLGTNQ------LTVLPSAV 107 (229)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CC-CCCTTTTTTCTTCCEEECCSSC------CCCCCTTT
T ss_pred CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC--CC-CcChhhcccCCCcCEEECCCCc------CCccChhH
Confidence 346789999999999977667788999999999999987 43 4455678899999999999994 7777654
Q ss_pred hcCCCCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCccccc-ccccCCCCcEEEeCCccccc
Q 037574 624 IKRLIHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQ-GMGKLINLRHVVNVGTPLSY 690 (961)
Q Consensus 624 i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~l~~ 690 (961)
+..+++|++|+|++|. +..+|..+..+++|++|++++|. +..+|. .+..+++|++|++.+|.+..
T Consensus 108 ~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 108 FDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred hCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 6899999999999999 99999999999999999999987 888875 47889999999998887654
No 113
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.23 E-value=3.9e-11 Score=125.40 Aligned_cols=143 Identities=24% Similarity=0.352 Sum_probs=113.2
Q ss_pred CccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhccc-chhhcCC
Q 037574 549 KFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKV-PKQIKRL 627 (961)
Q Consensus 549 ~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l 627 (961)
..+++++.++.+ ..+|..+. ++++.|++.++. +. .+.+..|.++++|++|+|++| . +..+ |..+..+
T Consensus 15 ~~~~l~~~~~~l-~~~p~~~~--~~l~~L~L~~n~--l~-~~~~~~~~~l~~L~~L~L~~n-----~-l~~~~~~~~~~l 82 (251)
T 3m19_A 15 GKKEVDCQGKSL-DSVPSGIP--ADTEKLDLQSTG--LA-TLSDATFRGLTKLTWLNLDYN-----Q-LQTLSAGVFDDL 82 (251)
T ss_dssp GGTEEECTTCCC-SSCCSCCC--TTCCEEECTTSC--CC-CCCTTTTTTCTTCCEEECTTS-----C-CCCCCTTTTTTC
T ss_pred CCeEEecCCCCc-cccCCCCC--CCCCEEEccCCC--cC-ccCHhHhcCcccCCEEECCCC-----c-CCccCHhHhccC
Confidence 456677777766 45565443 689999999987 33 345566889999999999999 4 5555 4558999
Q ss_pred CCcceEeccCCCCcccCC-cchhccCCCcEeecCCCCCCcccccc-cccCCCCcEEEeCCcccccCCcC-CCCCCCCCcC
Q 037574 628 IHLRYLNLSKNNKIKKLP-KTLCELYNLQTLELSWCSNLRNLPQG-MGKLINLRHVVNVGTPLSYMPKG-IERWSCLRTL 704 (961)
Q Consensus 628 ~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~l~~~p~~-i~~L~~L~~L 704 (961)
++|++|+|++|. +..+| ..+..+++|++|++++|. +..+|.. +..+++|++|++++|++..+|.. ++.+++|+.|
T Consensus 83 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 83 TELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL 160 (251)
T ss_dssp TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEE
Confidence 999999999999 77777 457899999999999987 8888866 58899999999999999988873 6667776666
Q ss_pred C
Q 037574 705 S 705 (961)
Q Consensus 705 ~ 705 (961)
.
T Consensus 161 ~ 161 (251)
T 3m19_A 161 S 161 (251)
T ss_dssp E
T ss_pred E
Confidence 4
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.21 E-value=4e-11 Score=122.29 Aligned_cols=140 Identities=23% Similarity=0.343 Sum_probs=100.0
Q ss_pred EEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhccc-chhhcCCCCc
Q 037574 552 HLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKV-PKQIKRLIHL 630 (961)
Q Consensus 552 ~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l~~L 630 (961)
.+.+.++.+ ..+|..+. ++|+.|++.++. +. .+.+..|..+++|++|+|++| . +..+ |..+..+++|
T Consensus 15 ~v~c~~~~l-~~iP~~l~--~~l~~L~l~~n~--i~-~i~~~~~~~l~~L~~L~Ls~N-----~-i~~~~~~~~~~l~~L 82 (220)
T 2v9t_B 15 IVDCRGKGL-TEIPTNLP--ETITEIRLEQNT--IK-VIPPGAFSPYKKLRRIDLSNN-----Q-ISELAPDAFQGLRSL 82 (220)
T ss_dssp EEECTTSCC-SSCCSSCC--TTCCEEECCSSC--CC-EECTTSSTTCTTCCEEECCSS-----C-CCEECTTTTTTCSSC
T ss_pred EEEcCCCCc-CcCCCccC--cCCCEEECCCCc--CC-CcCHhHhhCCCCCCEEECCCC-----c-CCCcCHHHhhCCcCC
Confidence 344444444 34454333 678888888876 33 334556788888888888888 3 5555 6778888888
Q ss_pred ceEeccCCCCcccCCcc-hhccCCCcEeecCCCCCCccc-ccccccCCCCcEEEeCCcccccCCcC-CCCCCCCCcCC
Q 037574 631 RYLNLSKNNKIKKLPKT-LCELYNLQTLELSWCSNLRNL-PQGMGKLINLRHVVNVGTPLSYMPKG-IERWSCLRTLS 705 (961)
Q Consensus 631 r~L~L~~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~~~l~~~p~~-i~~L~~L~~L~ 705 (961)
++|+|++|. ++.+|.. +..+++|++|++++|. +..+ |..+..+++|++|++++|.+..++.. +..+++|+.|.
T Consensus 83 ~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 83 NSLVLYGNK-ITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH 158 (220)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CEEECCCCc-CCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEE
Confidence 888888888 7787754 5788888888888887 6665 45678888888888888888877764 55565555543
No 115
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.20 E-value=1.3e-10 Score=124.11 Aligned_cols=140 Identities=16% Similarity=0.227 Sum_probs=101.3
Q ss_pred CCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcC
Q 037574 547 HEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKR 626 (961)
Q Consensus 547 ~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~ 626 (961)
...++.+.+..+.+. .++ .+..+++|++|++++|. +. . .+. +.++++|++|+|++|. +..+|. ++.
T Consensus 45 l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~--l~-~-~~~-l~~l~~L~~L~l~~n~------l~~~~~-l~~ 110 (291)
T 1h6t_A 45 LNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNK--LT-D-IKP-LANLKNLGWLFLDENK------VKDLSS-LKD 110 (291)
T ss_dssp HHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSC--CC-C-CGG-GTTCTTCCEEECCSSC------CCCGGG-GTT
T ss_pred cCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCc--cC-C-Ccc-cccCCCCCEEECCCCc------CCCChh-hcc
Confidence 346778888777763 333 47778888888888876 32 2 222 7788888888888883 666554 888
Q ss_pred CCCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcccccCCcCCCCCCCCCcCC
Q 037574 627 LIHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLSYMPKGIERWSCLRTLS 705 (961)
Q Consensus 627 l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~~~p~~i~~L~~L~~L~ 705 (961)
+++|++|+|++|. +..+| .+..+++|++|++++|. +..+ ..+..+++|++|++++|.+..++. +..+++|+.|.
T Consensus 111 l~~L~~L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~ 184 (291)
T 1h6t_A 111 LKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLY 184 (291)
T ss_dssp CTTCCEEECTTSC-CCCCG-GGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred CCCCCEEECCCCc-CCCCh-hhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEE
Confidence 8888888888887 77774 57888888888888876 6666 467888888888888887777665 55555555543
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.19 E-value=5.3e-11 Score=115.86 Aligned_cols=131 Identities=21% Similarity=0.214 Sum_probs=108.6
Q ss_pred cCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCccc-CCcc
Q 037574 569 YNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKK-LPKT 647 (961)
Q Consensus 569 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~-lp~~ 647 (961)
...++|+.|++.+|. +....++..+..+++|++|+|++|. +..+ ..++.+++|++|+|++|. +.. +|..
T Consensus 21 ~~~~~L~~L~l~~n~--l~~~~i~~~~~~l~~L~~L~l~~n~------l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~ 90 (168)
T 2ell_A 21 RTPAAVRELVLDNCK--SNDGKIEGLTAEFVNLEFLSLINVG------LISV-SNLPKLPKLKKLELSENR-IFGGLDML 90 (168)
T ss_dssp SCTTSCSEEECCSCB--CBTTBCSSCCGGGGGCCEEEEESSC------CCCC-SSCCCCSSCCEEEEESCC-CCSCCCHH
T ss_pred CCcccCCEEECCCCC--CChhhHHHHHHhCCCCCEEeCcCCC------CCCh-hhhccCCCCCEEECcCCc-CchHHHHH
Confidence 344789999999987 3211345557899999999999994 6666 778999999999999999 776 7887
Q ss_pred hhccCCCcEeecCCCCCCcccc--cccccCCCCcEEEeCCcccccCCc----CCCCCCCCCcCCceEec
Q 037574 648 LCELYNLQTLELSWCSNLRNLP--QGMGKLINLRHVVNVGTPLSYMPK----GIERWSCLRTLSEFIVS 710 (961)
Q Consensus 648 i~~L~~L~~L~l~~~~~l~~lP--~~i~~L~~L~~L~l~~~~l~~~p~----~i~~L~~L~~L~~~~~~ 710 (961)
+..+++|++|++++|. +..+| ..+..+++|++|++++|.+..+|. .+..+++|+.|......
T Consensus 91 ~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp HHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred HhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 8889999999999987 88876 688999999999999999998887 68888889888765543
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.18 E-value=8.6e-11 Score=119.81 Aligned_cols=142 Identities=16% Similarity=0.250 Sum_probs=103.2
Q ss_pred cEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccch-hhcCCCC
Q 037574 551 PHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPK-QIKRLIH 629 (961)
Q Consensus 551 r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~-~i~~l~~ 629 (961)
+.++++.+.+ ..+|..+ .+.++.|++++|. +........|..+++|++|+|++| . +..++. .+..+++
T Consensus 14 ~~l~~s~n~l-~~iP~~~--~~~~~~L~L~~N~--l~~~~~~~~~~~l~~L~~L~L~~N-----~-i~~i~~~~~~~l~~ 82 (220)
T 2v70_A 14 TTVDCSNQKL-NKIPEHI--PQYTAELRLNNNE--FTVLEATGIFKKLPQLRKINFSNN-----K-ITDIEEGAFEGASG 82 (220)
T ss_dssp TEEECCSSCC-SSCCSCC--CTTCSEEECCSSC--CCEECCCCCGGGCTTCCEEECCSS-----C-CCEECTTTTTTCTT
T ss_pred CEeEeCCCCc-ccCccCC--CCCCCEEEcCCCc--CCccCchhhhccCCCCCEEECCCC-----c-CCEECHHHhCCCCC
Confidence 4677777766 3455443 3456888888876 331112345788889999999988 3 666654 6888999
Q ss_pred cceEeccCCCCcccCCc-chhccCCCcEeecCCCCCCccc-ccccccCCCCcEEEeCCcccccC-CcCCCCCCCCCcCC
Q 037574 630 LRYLNLSKNNKIKKLPK-TLCELYNLQTLELSWCSNLRNL-PQGMGKLINLRHVVNVGTPLSYM-PKGIERWSCLRTLS 705 (961)
Q Consensus 630 Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~~~l~~~-p~~i~~L~~L~~L~ 705 (961)
|++|+|++|. +..+|. .+..+++|++|++++|. +..+ |..+..+++|++|++++|.+..+ |..+..+++|+.|.
T Consensus 83 L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 83 VNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp CCEEECCSSC-CCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCEEECCCCc-cCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence 9999999988 777664 58889999999999887 6655 56788889999999988888877 45566666666554
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.17 E-value=9e-11 Score=119.67 Aligned_cols=134 Identities=22% Similarity=0.303 Sum_probs=113.9
Q ss_pred cCCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchh-h
Q 037574 546 SHEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQ-I 624 (961)
Q Consensus 546 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~-i 624 (961)
.+..++.|.+.+|.+....+..+..+++|+.|++++|. +. .+.+..|..+++|++|+|++|. +..+|.. +
T Consensus 30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~--i~-~~~~~~~~~l~~L~~L~Ls~N~------l~~l~~~~f 100 (220)
T 2v9t_B 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ--IS-ELAPDAFQGLRSLNSLVLYGNK------ITELPKSLF 100 (220)
T ss_dssp CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC--CC-EECTTTTTTCSSCCEEECCSSC------CCCCCTTTT
T ss_pred cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc--CC-CcCHHHhhCCcCCCEEECCCCc------CCccCHhHc
Confidence 45789999999999865555678999999999999987 43 4457779999999999999994 7788765 6
Q ss_pred cCCCCcceEeccCCCCcccC-CcchhccCCCcEeecCCCCCCccccc-ccccCCCCcEEEeCCccccc
Q 037574 625 KRLIHLRYLNLSKNNKIKKL-PKTLCELYNLQTLELSWCSNLRNLPQ-GMGKLINLRHVVNVGTPLSY 690 (961)
Q Consensus 625 ~~l~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~l~~ 690 (961)
..+++|++|+|++|. +..+ |..+..+++|++|++++|. +..+|. .+..+++|++|++++|.+..
T Consensus 101 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 101 EGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 889999999999999 7776 5779999999999999988 777775 48889999999999887653
No 119
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.16 E-value=1.8e-10 Score=116.42 Aligned_cols=120 Identities=31% Similarity=0.532 Sum_probs=56.3
Q ss_pred CccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchh-hcCCCCcceEeccCCCCcccCCcc-hhc
Q 037574 573 KLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQ-IKRLIHLRYLNLSKNNKIKKLPKT-LCE 650 (961)
Q Consensus 573 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~-i~~l~~Lr~L~L~~~~~i~~lp~~-i~~ 650 (961)
+|+.|++.++. +. .+.+..|..+++|++|+|++|. +..+|.. +..+++|++|+|++|. +..+|.. +.+
T Consensus 29 ~l~~L~l~~n~--l~-~~~~~~~~~l~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~ 98 (208)
T 2o6s_A 29 QTTYLDLETNS--LK-SLPNGVFDELTSLTQLYLGGNK------LQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDK 98 (208)
T ss_dssp TCSEEECCSSC--CC-CCCTTTTTTCTTCSEEECCSSC------CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred CCcEEEcCCCc--cC-cCChhhhcccccCcEEECCCCc------cCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcC
Confidence 45555555543 22 2233334455555555555552 3344332 3455555555555555 4444432 345
Q ss_pred cCCCcEeecCCCCCCcccccc-cccCCCCcEEEeCCcccccCCcC-CCCCCCCCc
Q 037574 651 LYNLQTLELSWCSNLRNLPQG-MGKLINLRHVVNVGTPLSYMPKG-IERWSCLRT 703 (961)
Q Consensus 651 L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~l~~~p~~-i~~L~~L~~ 703 (961)
+++|++|++++|. +..+|.. +..+++|++|++++|.+..+|.. +..+++|+.
T Consensus 99 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 152 (208)
T 2o6s_A 99 LTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 152 (208)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred ccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccE
Confidence 5555555555544 4444433 34455555555555555544443 333333333
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.15 E-value=4.3e-11 Score=125.71 Aligned_cols=86 Identities=20% Similarity=0.241 Sum_probs=64.4
Q ss_pred cCCcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccccccccCC
Q 037574 597 QLTCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLI 676 (961)
Q Consensus 597 ~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~ 676 (961)
.+..+..++++++ . +..++ .+..+++|++|++++|. +..+| .+..+++|++|++++|. +..+|. +..++
T Consensus 17 ~l~~l~~l~l~~~-----~-i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~ 85 (263)
T 1xeu_A 17 GLANAVKQNLGKQ-----S-VTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLT 85 (263)
T ss_dssp HHHHHHHHHHTCS-----C-TTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCS
T ss_pred HHHHHHHHHhcCC-----C-ccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCc-cCCChh-hccCC
Confidence 4555666777776 3 66666 57778888888888887 77887 57888888888888876 777776 78888
Q ss_pred CCcEEEeCCcccccCCc
Q 037574 677 NLRHVVNVGTPLSYMPK 693 (961)
Q Consensus 677 ~L~~L~l~~~~l~~~p~ 693 (961)
+|++|++++|++..+|.
T Consensus 86 ~L~~L~L~~N~l~~l~~ 102 (263)
T 1xeu_A 86 KLEELSVNRNRLKNLNG 102 (263)
T ss_dssp SCCEEECCSSCCSCCTT
T ss_pred CCCEEECCCCccCCcCc
Confidence 88888888777666543
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.15 E-value=2.9e-11 Score=115.12 Aligned_cols=123 Identities=25% Similarity=0.333 Sum_probs=54.7
Q ss_pred CCccEEEEEeccCC-CCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcc-cchhhc
Q 037574 548 EKFPHLMITFESDQ-GAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKK-VPKQIK 625 (961)
Q Consensus 548 ~~~r~l~l~~~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~-lp~~i~ 625 (961)
++++++.+.+|.+. ..+|..+..+++|+.|.+.+|. +. . . ..+..+++|++|+|++| . +.. +|..++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~--l~-~-~-~~~~~l~~L~~L~Ls~n-----~-i~~~~~~~~~ 85 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG--LT-S-I-ANLPKLNKLKKLELSDN-----R-VSGGLEVLAE 85 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC--CC-C-C-TTCCCCTTCCEEECCSS-----C-CCSCTHHHHH
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC--CC-C-c-hhhhcCCCCCEEECCCC-----c-ccchHHHHhh
Confidence 44555555555543 2344444444555555554443 11 1 1 22444444555555444 2 332 444444
Q ss_pred CCCCcceEeccCCCCcccCC--cchhccCCCcEeecCCCCCCccccc----ccccCCCCcEEEe
Q 037574 626 RLIHLRYLNLSKNNKIKKLP--KTLCELYNLQTLELSWCSNLRNLPQ----GMGKLINLRHVVN 683 (961)
Q Consensus 626 ~l~~Lr~L~L~~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lP~----~i~~L~~L~~L~l 683 (961)
.+++|++|++++|. ++.+| ..++.+++|++|++++|. +..+|. .+..+++|++|++
T Consensus 86 ~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 86 KCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp HCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred hCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 44445555554444 44432 344444444444444443 333333 3444444444443
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.14 E-value=6.4e-11 Score=142.80 Aligned_cols=150 Identities=20% Similarity=0.270 Sum_probs=86.5
Q ss_pred CCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCcc-ccccchhhhccCCcccEEEccCCChhhhhhhcccchhhc
Q 037574 547 HEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFM-NGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIK 625 (961)
Q Consensus 547 ~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~-~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~ 625 (961)
.+.++++.+..+... ..+..+....+|+.+.+....... ....++..|..++.|++|+|++| . +..+|..+.
T Consensus 172 ~~~~~~l~L~~n~~~-~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n-----~-l~~l~~~~~ 244 (727)
T 4b8c_D 172 TPLTPKIELFANGKD-EANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNL-----Q-IFNISANIF 244 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTS-----C-CSCCCGGGG
T ss_pred CCccceEEeeCCCCC-cchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCC-----C-CCCCChhhc
Confidence 355777888777663 234444444445544443321000 01234666788888999999988 3 678888888
Q ss_pred CCCCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcccccCCcCCCCCCCCCcCC
Q 037574 626 RLIHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLSYMPKGIERWSCLRTLS 705 (961)
Q Consensus 626 ~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~~~p~~i~~L~~L~~L~ 705 (961)
++++|++|+|++|. +..+|..|++|.+|++|+|++|. +..+|..++.|++|++|+|++|.+..+|.+++.|++|+.|.
T Consensus 245 ~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 245 KYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLG 322 (727)
T ss_dssp GCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEE
T ss_pred CCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEe
Confidence 88899999999888 77888888899999999998887 77888888889999999998888888888888877777765
No 123
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.14 E-value=1.3e-10 Score=118.43 Aligned_cols=134 Identities=16% Similarity=0.203 Sum_probs=111.7
Q ss_pred cCCCccEEEEEeccCCCCCc-ccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccc-hh
Q 037574 546 SHEKFPHLMITFESDQGAFP-NSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVP-KQ 623 (961)
Q Consensus 546 ~~~~~r~l~l~~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp-~~ 623 (961)
.+..++.|.++.|.+....+ ..+..+++|+.|++.+|. +. .+.+..|..+++|++|+|++| . +..+| ..
T Consensus 30 ~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~--i~-~i~~~~~~~l~~L~~L~Ls~N-----~-l~~~~~~~ 100 (220)
T 2v70_A 30 IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK--IT-DIEEGAFEGASGVNEILLTSN-----R-LENVQHKM 100 (220)
T ss_dssp CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC--CC-EECTTTTTTCTTCCEEECCSS-----C-CCCCCGGG
T ss_pred CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc--CC-EECHHHhCCCCCCCEEECCCC-----c-cCccCHhH
Confidence 45678999999999854323 457899999999999987 44 445667899999999999999 4 66665 45
Q ss_pred hcCCCCcceEeccCCCCcccC-CcchhccCCCcEeecCCCCCCccc-ccccccCCCCcEEEeCCccccc
Q 037574 624 IKRLIHLRYLNLSKNNKIKKL-PKTLCELYNLQTLELSWCSNLRNL-PQGMGKLINLRHVVNVGTPLSY 690 (961)
Q Consensus 624 i~~l~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~~~l~~ 690 (961)
++.+++|++|+|++|. +..+ |..+..+++|++|++++|. +..+ |..+..+++|++|++++|.+..
T Consensus 101 ~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 101 FKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp GTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred hcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 8999999999999999 7766 6789999999999999988 7666 6789999999999999887653
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.14 E-value=4.8e-11 Score=113.55 Aligned_cols=125 Identities=21% Similarity=0.239 Sum_probs=105.1
Q ss_pred CCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCccc-CCcchh
Q 037574 571 QKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKK-LPKTLC 649 (961)
Q Consensus 571 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~-lp~~i~ 649 (961)
.++|+.|++.++. +....++..+..+++|++|++++|. +..+ ..++.+++|++|+|++|. +.. +|..++
T Consensus 16 ~~~l~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~------l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~ 85 (149)
T 2je0_A 16 PSDVKELVLDNSR--SNEGKLEGLTDEFEELEFLSTINVG------LTSI-ANLPKLNKLKKLELSDNR-VSGGLEVLAE 85 (149)
T ss_dssp GGGCSEEECTTCB--CBTTBCCSCCTTCTTCCEEECTTSC------CCCC-TTCCCCTTCCEEECCSSC-CCSCTHHHHH
T ss_pred CccCeEEEccCCc--CChhHHHHHHhhcCCCcEEECcCCC------CCCc-hhhhcCCCCCEEECCCCc-ccchHHHHhh
Confidence 4789999999986 3211345567899999999999994 6666 778999999999999999 776 888888
Q ss_pred ccCCCcEeecCCCCCCcccc--cccccCCCCcEEEeCCcccccCCc----CCCCCCCCCcCCc
Q 037574 650 ELYNLQTLELSWCSNLRNLP--QGMGKLINLRHVVNVGTPLSYMPK----GIERWSCLRTLSE 706 (961)
Q Consensus 650 ~L~~L~~L~l~~~~~l~~lP--~~i~~L~~L~~L~l~~~~l~~~p~----~i~~L~~L~~L~~ 706 (961)
.+++|++|++++|. +..+| ..+..+++|++|++++|.+..+|. .++.+++|+.|..
T Consensus 86 ~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 86 KCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp HCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred hCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 89999999999988 77765 789999999999999999998876 5777888888764
No 125
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.13 E-value=1.1e-09 Score=111.95 Aligned_cols=185 Identities=14% Similarity=0.065 Sum_probs=117.9
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhc-cCc-eeEEEEeCCCCCHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKA-NFD-KRIWVSASCPRDEIR 240 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~F~-~~~wv~~s~~~~~~~ 240 (961)
..++|++..++.+.+++... ..+.+.|+|++|+|||+||+.+++. ... .+. ..+.+..+.......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~----------~~~~~ll~G~~G~GKT~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~ 84 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK----------NIPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASDERGIDV 84 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT----------CCCCEEEECSTTSSHHHHHHHHHHH--HHGGGGGGGEEEEETTCTTCHHH
T ss_pred HHHcCcHHHHHHHHHHHhCC----------CCCeEEEECCCCCCHHHHHHHHHHH--HhccccccceEEeccccccChHH
Confidence 46899999999999999763 2234899999999999999999873 322 222 233444444333322
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCccc-cc
Q 037574 241 VAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNG-TN 319 (961)
Q Consensus 241 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~-~~ 319 (961)
+...+ ..+.... ....+++.+||+||++ .......+.+...+.....+..+|+||+..... ..
T Consensus 85 ~~~~~-~~~~~~~--------------~~~~~~~~vliiDe~~-~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~ 148 (226)
T 2chg_A 85 VRHKI-KEFARTA--------------PIGGAPFKIIFLDEAD-ALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEP 148 (226)
T ss_dssp HHHHH-HHHHTSC--------------CSTTCSCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred HHHHH-HHHhccc--------------CCCccCceEEEEeChh-hcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHH
Confidence 22111 1111000 0013578899999996 445566677777776666678888888765321 11
Q ss_pred ccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHHH
Q 037574 320 MTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKILG 388 (961)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~~ 388 (961)
+. .+...+.+.+++.++..+++.+.+...... --.+..+.|++.++|.|..+..+.
T Consensus 149 l~---------~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 149 IQ---------SRCAVFRFKPVPKEAMKKRLLEICEKEGVK----ITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp HH---------TTSEEEECCCCCHHHHHHHHHHHHHHHTCC----BCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HH---------HhCceeecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 11 112588999999999999998876422211 113456778899999998655443
No 126
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.13 E-value=1.1e-10 Score=137.24 Aligned_cols=138 Identities=21% Similarity=0.275 Sum_probs=65.4
Q ss_pred CCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcCC
Q 037574 548 EKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRL 627 (961)
Q Consensus 548 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l 627 (961)
++++.|.++.|.+.. ++. +..+++|+.|.+++|. +. . ++ .+..+++|+.|+|++|. +..++ .+..|
T Consensus 65 ~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~--l~-~-l~-~l~~l~~L~~L~Ls~N~------l~~l~-~l~~l 130 (605)
T 1m9s_A 65 PNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENK--IK-D-LS-SLKDLKKLKSLSLEHNG------ISDIN-GLVHL 130 (605)
T ss_dssp TTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSC--CC-C-CT-TSTTCTTCCEEECTTSC------CCCCG-GGGGC
T ss_pred CCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCC--CC-C-Ch-hhccCCCCCEEEecCCC------CCCCc-cccCC
Confidence 445555555554422 221 4555555555555543 11 1 11 24455555555555552 33332 24555
Q ss_pred CCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcccccCCcCCCCCCCCCcC
Q 037574 628 IHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLSYMPKGIERWSCLRTL 704 (961)
Q Consensus 628 ~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~~~p~~i~~L~~L~~L 704 (961)
++|++|+|++|. +..+ ..++.|++|+.|+|++|. +..++. +..+++|++|++++|.+..+| .+..+++|+.|
T Consensus 131 ~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L 202 (605)
T 1m9s_A 131 PQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVL 202 (605)
T ss_dssp TTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEE
T ss_pred CccCEEECCCCc-cCCc-hhhcccCCCCEEECcCCc-CCCchh-hccCCCCCEEECcCCCCCCCh-HHccCCCCCEE
Confidence 555555555555 4444 335555555555555554 444433 555555555555555554442 24444444443
No 127
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.13 E-value=2.5e-11 Score=134.38 Aligned_cols=246 Identities=14% Similarity=0.195 Sum_probs=131.0
Q ss_pred EeccCCCCCcccccCCCCccEEEeccCCCccccccch----hhhccCC-cccEEEccCCChhhhhhhccc-chhhcCC--
Q 037574 556 TFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLS----KVFDQLT-CLRTLELSNHDNVLCKVIKKV-PKQIKRL-- 627 (961)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~----~~~~~l~-~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l-- 627 (961)
..+.++..+|..+...++|+.|++++|. +. .... ..|..++ +|++|+|++|. +... +..+..+
T Consensus 6 s~n~~~~~~~~~~~~~~~L~~L~Ls~n~--l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~------l~~~~~~~l~~~l~ 76 (362)
T 3goz_A 6 TLHPGSNPVEEFTSIPHGVTSLDLSLNN--LY-SISTVELIQAFANTPASVTSLNLSGNS------LGFKNSDELVQILA 76 (362)
T ss_dssp CCCTTCCHHHHHHTSCTTCCEEECTTSC--GG-GSCHHHHHHHHHTCCTTCCEEECCSSC------GGGSCHHHHHHHHH
T ss_pred ccccchHHHHHHHhCCCCceEEEccCCC--CC-hHHHHHHHHHHHhCCCceeEEECcCCC------CCHHHHHHHHHHHh
Confidence 3444434444444555567888877776 22 1122 4566677 78888888773 3332 4444443
Q ss_pred ---CCcceEeccCCCCcccCC-cc----hhcc-CCCcEeecCCCCCCccccc-cc----cc-CCCCcEEEeCCccccc--
Q 037574 628 ---IHLRYLNLSKNNKIKKLP-KT----LCEL-YNLQTLELSWCSNLRNLPQ-GM----GK-LINLRHVVNVGTPLSY-- 690 (961)
Q Consensus 628 ---~~Lr~L~L~~~~~i~~lp-~~----i~~L-~~L~~L~l~~~~~l~~lP~-~i----~~-L~~L~~L~l~~~~l~~-- 690 (961)
++|++|+|++|. +...+ .. +..+ ++|++|++++|. +...+. .+ .. .++|++|++++|.+..
T Consensus 77 ~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 154 (362)
T 3goz_A 77 AIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS 154 (362)
T ss_dssp TSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC
T ss_pred ccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH
Confidence 778888888777 65443 32 3333 678888888776 554442 22 23 2577888877776652
Q ss_pred ---CCcCCCCCC-CCCcCCceEecCCCCCCCCCChhhhhcccccCCceeEcCCCCCChhhhHhhccccc-cccCceeEEe
Q 037574 691 ---MPKGIERWS-CLRTLSEFIVSGGNDDKKASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKR-EKLLALGISF 765 (961)
Q Consensus 691 ---~p~~i~~L~-~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~-~~L~~L~l~~ 765 (961)
++..+..+. +|++|. ++.+... . .....+...+... ++|+.|+|++
T Consensus 155 ~~~l~~~l~~~~~~L~~L~---Ls~n~l~-------------------------~-~~~~~l~~~l~~~~~~L~~L~Ls~ 205 (362)
T 3goz_A 155 SDELIQILAAIPANVNSLN---LRGNNLA-------------------------S-KNCAELAKFLASIPASVTSLDLSA 205 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEE---CTTSCGG-------------------------G-SCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHHHHHHhcCCccccEee---ecCCCCc-------------------------h-hhHHHHHHHHHhCCCCCCEEECCC
Confidence 111122222 333332 2221100 0 0111222233444 4777888877
Q ss_pred cCCCCcCCCccchHHHHhcCCC-CCCcCceEEeeecCccccc----cccccccCceEEEEeCCC--CC-----CcCC-CC
Q 037574 766 DRDDEEGRKKEDDEAVVEGLEL-PSNLESMEMFYYRGESISL----MMIMLSNKLRSLTLDRCV--NL-----KQLP-GL 832 (961)
Q Consensus 766 ~~~~~~~~~~~~~~~~l~~l~~-~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~L~~~~--~~-----~~l~-~l 832 (961)
|.... .....+...+.. +++|+.|+++++....... .....+++|+.|+|++|. .+ ..++ .+
T Consensus 206 N~i~~-----~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~ 280 (362)
T 3goz_A 206 NLLGL-----KSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAF 280 (362)
T ss_dssp SCGGG-----SCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTS
T ss_pred CCCCh-----hHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHh
Confidence 75431 111223333332 3578888888876554311 111356788888888874 11 1111 46
Q ss_pred CCCCccceeeeccc
Q 037574 833 GGLPSLESLTLRNM 846 (961)
Q Consensus 833 ~~lp~L~~L~L~~~ 846 (961)
..+++|+.|+++++
T Consensus 281 ~~l~~L~~LdL~~N 294 (362)
T 3goz_A 281 PNIQKIILVDKNGK 294 (362)
T ss_dssp TTCCEEEEECTTSC
T ss_pred ccCCceEEEecCCC
Confidence 67888999999874
No 128
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.12 E-value=3e-10 Score=113.69 Aligned_cols=130 Identities=17% Similarity=0.229 Sum_probs=107.3
Q ss_pred cCCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhc-ccchhh
Q 037574 546 SHEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIK-KVPKQI 624 (961)
Q Consensus 546 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~-~lp~~i 624 (961)
..+++++|.+.+|.+. . +..+..+++|++|++.+|. +. ...+..+..+++|++|+|++| . +. ..|..+
T Consensus 64 ~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~--l~-~~~~~~l~~l~~L~~L~Ls~n-----~-i~~~~~~~l 132 (197)
T 4ezg_A 64 YAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKD--VT-SDKIPNLSGLTSLTLLDISHS-----A-HDDSILTKI 132 (197)
T ss_dssp GCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTT--CB-GGGSCCCTTCTTCCEEECCSS-----B-CBGGGHHHH
T ss_pred cCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCc--cC-cccChhhcCCCCCCEEEecCC-----c-cCcHhHHHH
Confidence 3568999999999663 3 3478899999999999987 33 223455889999999999999 4 44 468889
Q ss_pred cCCCCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcccc
Q 037574 625 KRLIHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLS 689 (961)
Q Consensus 625 ~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~ 689 (961)
+.+++|++|+|++|..+..+| .+..+++|++|++++|. +..+| .+..+++|++|++++|++.
T Consensus 133 ~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 133 NTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp TTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEEEECBC---
T ss_pred hhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-HhccCCCCCEEEeeCcccC
Confidence 999999999999997688887 69999999999999987 88887 8899999999999988754
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.12 E-value=1.1e-10 Score=114.58 Aligned_cols=128 Identities=20% Similarity=0.236 Sum_probs=95.9
Q ss_pred cccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcccCCc
Q 037574 567 SVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKKLPK 646 (961)
Q Consensus 567 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~ 646 (961)
.+..+++|+.|.+.+|. +. . ++.....+++|++|+|++|. +..+ ..++.+++|++|+|++|. +..+|.
T Consensus 14 ~~~~~~~L~~L~l~~n~--l~-~-i~~~~~~~~~L~~L~Ls~N~------l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~ 81 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYK--IP-V-IENLGATLDQFDAIDFSDNE------IRKL-DGFPLLRRLKTLLVNNNR-ICRIGE 81 (176)
T ss_dssp EEECTTSCEEEECTTSC--CC-S-CCCGGGGTTCCSEEECCSSC------CCEE-CCCCCCSSCCEEECCSSC-CCEECS
T ss_pred hcCCcCCceEEEeeCCC--Cc-h-hHHhhhcCCCCCEEECCCCC------CCcc-cccccCCCCCEEECCCCc-ccccCc
Confidence 45667788888888876 32 2 23333334488899998883 6666 568888889999999888 888875
Q ss_pred ch-hccCCCcEeecCCCCCCccccc--ccccCCCCcEEEeCCcccccCCcC----CCCCCCCCcCCce
Q 037574 647 TL-CELYNLQTLELSWCSNLRNLPQ--GMGKLINLRHVVNVGTPLSYMPKG----IERWSCLRTLSEF 707 (961)
Q Consensus 647 ~i-~~L~~L~~L~l~~~~~l~~lP~--~i~~L~~L~~L~l~~~~l~~~p~~----i~~L~~L~~L~~~ 707 (961)
.+ +.+++|++|++++|. +..+|. .+..+++|++|++++|.+..+|.. ++.+++|+.|...
T Consensus 82 ~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 82 GLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp CHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred chhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCC
Confidence 55 888899999998887 777886 788888899999988888877764 6667777776643
No 130
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.10 E-value=3.4e-10 Score=114.44 Aligned_cols=133 Identities=23% Similarity=0.334 Sum_probs=107.5
Q ss_pred cCCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchh-h
Q 037574 546 SHEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQ-I 624 (961)
Q Consensus 546 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~-i 624 (961)
...++++|.+.++.+....+..+..+++|++|++.++. +. .+.+..|..+++|++|+|++|. +..+|.. +
T Consensus 26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~-~~~~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~ 96 (208)
T 2o6s_A 26 IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK--LQ-SLPNGVFNKLTSLTYLNLSTNQ------LQSLPNGVF 96 (208)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC--CC-CCCTTTTTTCTTCCEEECCSSC------CCCCCTTTT
T ss_pred CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc--cC-ccChhhcCCCCCcCEEECCCCc------CCccCHhHh
Confidence 45689999999998865445567889999999999886 33 4455667889999999999983 6666654 6
Q ss_pred cCCCCcceEeccCCCCcccCCcc-hhccCCCcEeecCCCCCCcccccc-cccCCCCcEEEeCCcccc
Q 037574 625 KRLIHLRYLNLSKNNKIKKLPKT-LCELYNLQTLELSWCSNLRNLPQG-MGKLINLRHVVNVGTPLS 689 (961)
Q Consensus 625 ~~l~~Lr~L~L~~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~l~ 689 (961)
+.+++|++|+|++|. +..+|.. +..+++|++|++++|. +..+|.. +..+++|++|++++|.+.
T Consensus 97 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 97 DKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee
Confidence 899999999999998 8877754 7889999999999987 7777765 788999999999887553
No 131
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.10 E-value=3.8e-10 Score=118.52 Aligned_cols=140 Identities=19% Similarity=0.224 Sum_probs=103.2
Q ss_pred CCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcC
Q 037574 547 HEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKR 626 (961)
Q Consensus 547 ~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~ 626 (961)
...++.|.+.++.+. .++ .+..+++|+.|++++|. +. . .+. +..+++|++|+|++|. +..+|....
T Consensus 40 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~--i~-~-~~~-l~~l~~L~~L~L~~N~------l~~l~~~~~- 105 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQ--IS-D-LSP-LKDLTKLEELSVNRNR------LKNLNGIPS- 105 (263)
T ss_dssp HTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSC--CC-C-CGG-GTTCSSCCEEECCSSC------CSCCTTCCC-
T ss_pred cCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCc--cC-C-Chh-hccCCCCCEEECCCCc------cCCcCcccc-
Confidence 456788888887773 444 67778888888888876 32 2 223 7788888888888883 666665333
Q ss_pred CCCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcccccCCcCCCCCCCCCcCCc
Q 037574 627 LIHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLSYMPKGIERWSCLRTLSE 706 (961)
Q Consensus 627 l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~~~p~~i~~L~~L~~L~~ 706 (961)
.+|++|+|++|. ++.+| .+..+++|++|++++|. +..+| .+..+++|++|++++|.+..+ ..+..+++|+.|..
T Consensus 106 -~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l 179 (263)
T 1xeu_A 106 -ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDL 179 (263)
T ss_dssp -SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEE
T ss_pred -CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeC
Confidence 788888888887 77776 48888888888888877 77776 678888888888888887776 45666666666554
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.10 E-value=6.6e-11 Score=131.03 Aligned_cols=214 Identities=14% Similarity=0.112 Sum_probs=137.9
Q ss_pred chhhhccCCcccEEEccCCChhhhhhhcccc-----hhhcCCC-CcceEeccCCCCcccC-Ccchhcc-----CCCcEee
Q 037574 591 LSKVFDQLTCLRTLELSNHDNVLCKVIKKVP-----KQIKRLI-HLRYLNLSKNNKIKKL-PKTLCEL-----YNLQTLE 658 (961)
Q Consensus 591 ~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp-----~~i~~l~-~Lr~L~L~~~~~i~~l-p~~i~~L-----~~L~~L~ 658 (961)
++.++...++|++|+|++|. +...+ ..+..++ +|++|+|++|. +... +..+..+ ++|++|+
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~------l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~ 86 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNN------LYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLN 86 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSC------GGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred HHHHHhCCCCceEEEccCCC------CChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEE
Confidence 56666677779999999994 55544 6778888 89999999998 7665 5667765 9999999
Q ss_pred cCCCCCCcccc-cc----cccC-CCCcEEEeCCcccccCCcC-----CCCC-CCCCcCCceEecCCCCCCCCCChhhhhc
Q 037574 659 LSWCSNLRNLP-QG----MGKL-INLRHVVNVGTPLSYMPKG-----IERW-SCLRTLSEFIVSGGNDDKKASKLECLKS 726 (961)
Q Consensus 659 l~~~~~l~~lP-~~----i~~L-~~L~~L~l~~~~l~~~p~~-----i~~L-~~L~~L~~~~~~~~~~~~~~~~l~~L~~ 726 (961)
+++|. +...+ .. +..+ ++|++|++++|.+...+.. +..+ ++|++|. ++.+. +..
T Consensus 87 Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~---Ls~N~-------l~~--- 152 (362)
T 3goz_A 87 LSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLN---LRGND-------LGI--- 152 (362)
T ss_dssp CCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEE---CTTSC-------GGG---
T ss_pred CcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEE---ccCCc-------CCH---
Confidence 99998 65443 33 4444 8999999999887665431 1111 2333332 22221 000
Q ss_pred ccccCCceeEcCCCCCChhhhHhhcccccc-ccCceeEEecCCCCcCCCccchHHHHhcCCCC-CCcCceEEeeecCccc
Q 037574 727 LNHLQGSLNIKGLGNVDKDEIFKAELSKRE-KLLALGISFDRDDEEGRKKEDDEAVVEGLELP-SNLESMEMFYYRGESI 804 (961)
Q Consensus 727 L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~-~~L~~L~l~~~~~~~~ 804 (961)
.....+...+...+ +|+.|++++|.... .....+...+... ++|+.|+++++.....
T Consensus 153 ----------------~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~-----~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~ 211 (362)
T 3goz_A 153 ----------------KSSDELIQILAAIPANVNSLNLRGNNLAS-----KNCAELAKFLASIPASVTSLDLSANLLGLK 211 (362)
T ss_dssp ----------------SCHHHHHHHHHTSCTTCCEEECTTSCGGG-----SCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred ----------------HHHHHHHHHHhcCCccccEeeecCCCCch-----hhHHHHHHHHHhCCCCCCEEECCCCCCChh
Confidence 01122333344444 89999999886431 1122333344444 5999999999886652
Q ss_pred --cccc--ccc-ccCceEEEEeCCCCCCcCC------CCCCCCccceeeecccc
Q 037574 805 --SLMM--IML-SNKLRSLTLDRCVNLKQLP------GLGGLPSLESLTLRNMK 847 (961)
Q Consensus 805 --~~~~--~~~-l~~L~~L~L~~~~~~~~l~------~l~~lp~L~~L~L~~~~ 847 (961)
..+. ... .++|++|+|++|. +...+ .+..+++|+.|+|++|.
T Consensus 212 ~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 212 SYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 1011 012 3589999999984 44433 35778999999999853
No 133
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.09 E-value=2.4e-10 Score=126.28 Aligned_cols=111 Identities=21% Similarity=0.297 Sum_probs=56.9
Q ss_pred CccEEEeccCCCccccccchhhhc-cCCcccEEEccCCChhhhhhhcccc-hhhcCCCCcceEeccCCCCcccCCc-chh
Q 037574 573 KLRSLGVEHGGGFMNGIVLSKVFD-QLTCLRTLELSNHDNVLCKVIKKVP-KQIKRLIHLRYLNLSKNNKIKKLPK-TLC 649 (961)
Q Consensus 573 ~Lr~L~l~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~i~~lp~-~i~ 649 (961)
.++.|++++|. +. .+.+..|. .+++|++|+|++| . +..++ ..+..+++|++|+|++|. +..+|. .+.
T Consensus 40 ~l~~L~Ls~N~--l~-~l~~~~~~~~l~~L~~L~L~~N-----~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~ 109 (361)
T 2xot_A 40 YTALLDLSHNN--LS-RLRAEWTPTRLTNLHSLLLSHN-----H-LNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFS 109 (361)
T ss_dssp TCSEEECCSSC--CC-EECTTSSSSCCTTCCEEECCSS-----C-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTT
T ss_pred CCCEEECCCCC--CC-ccChhhhhhcccccCEEECCCC-----c-CCccChhhccCCCCCCEEECCCCc-CCcCCHHHhC
Confidence 35555555554 22 22333343 5555555555555 2 44443 345555555555555555 444443 355
Q ss_pred ccCCCcEeecCCCCCCccc-ccccccCCCCcEEEeCCcccccCCcC
Q 037574 650 ELYNLQTLELSWCSNLRNL-PQGMGKLINLRHVVNVGTPLSYMPKG 694 (961)
Q Consensus 650 ~L~~L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~~~l~~~p~~ 694 (961)
.+.+|++|+|++|. +..+ |..+..+++|++|++++|.+..+|..
T Consensus 110 ~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 154 (361)
T 2xot_A 110 DLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVE 154 (361)
T ss_dssp TCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred CCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence 55555555555555 3333 34455555555555555555555544
No 134
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.03 E-value=3.2e-10 Score=131.50 Aligned_cols=78 Identities=21% Similarity=0.376 Sum_probs=46.5
Q ss_pred cccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccccccccCCCCc
Q 037574 600 CLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLINLR 679 (961)
Q Consensus 600 ~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~ 679 (961)
+|++|+|++| . +..+|..+. ++|++|+|++|. ++.+| ..+++|++|++++|. +..+|. +.. +|+
T Consensus 60 ~L~~L~Ls~n-----~-L~~lp~~l~--~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~ 123 (571)
T 3cvr_A 60 QFSELQLNRL-----N-LSSLPDNLP--PQITVLEITQNA-LISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLK 123 (571)
T ss_dssp TCSEEECCSS-----C-CSCCCSCCC--TTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCC
T ss_pred CccEEEeCCC-----C-CCccCHhHc--CCCCEEECcCCC-Ccccc---cccCCCCEEEccCCC-CCCcch-hhc--CCC
Confidence 5666666666 2 555555442 566666666666 66666 345666666666664 555665 443 666
Q ss_pred EEEeCCcccccCCc
Q 037574 680 HVVNVGTPLSYMPK 693 (961)
Q Consensus 680 ~L~l~~~~l~~~p~ 693 (961)
+|++++|.+..+|.
T Consensus 124 ~L~Ls~N~l~~lp~ 137 (571)
T 3cvr_A 124 HLDVDNNQLTMLPE 137 (571)
T ss_dssp EEECCSSCCSCCCC
T ss_pred EEECCCCcCCCCCC
Confidence 66666666665554
No 135
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.03 E-value=1.1e-09 Score=127.04 Aligned_cols=128 Identities=17% Similarity=0.340 Sum_probs=96.9
Q ss_pred CCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcCC
Q 037574 548 EKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRL 627 (961)
Q Consensus 548 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l 627 (961)
.+++.|++.++.+.. +|..+ .++|++|++++|. +. . +| ..+++|++|+|++|. +..+|. +++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~--l~-~-ip---~~l~~L~~L~Ls~N~------l~~ip~-l~~- 120 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNA--LI-S-LP---ELPASLEYLDACDNR------LSTLPE-LPA- 120 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSC--CS-C-CC---CCCTTCCEEECCSSC------CSCCCC-CCT-
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCC--Cc-c-cc---cccCCCCEEEccCCC------CCCcch-hhc-
Confidence 367888888888743 66544 3789999998886 32 2 23 457889999999883 667777 665
Q ss_pred CCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcccccCCcCCCCCCCCCcCC
Q 037574 628 IHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLSYMPKGIERWSCLRTLS 705 (961)
Q Consensus 628 ~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~~~p~~i~~L~~L~~L~ 705 (961)
+|++|+|++|. ++.+|. .+++|++|++++|. +..+|. .+++|++|++++|.+..+|. +. ++|+.|.
T Consensus 121 -~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~ 186 (571)
T 3cvr_A 121 -SLKHLDVDNNQ-LTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALD 186 (571)
T ss_dssp -TCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEE
T ss_pred -CCCEEECCCCc-CCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEE
Confidence 89999999888 888887 68889999998887 777886 57889999998888888887 55 5555543
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.01 E-value=2.9e-10 Score=137.09 Aligned_cols=117 Identities=26% Similarity=0.358 Sum_probs=93.1
Q ss_pred CCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcc
Q 037574 563 AFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIK 642 (961)
Q Consensus 563 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~ 642 (961)
..+..+..+++|+.|++++|. +. . ++..+.++++|++|+|++|. +..+|..|++|++|++|+|++|. +.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~--l~-~-l~~~~~~l~~L~~L~Ls~N~------l~~lp~~~~~l~~L~~L~Ls~N~-l~ 283 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQ--IF-N-ISANIFKYDFLTRLYLNGNS------LTELPAEIKNLSNLRVLDLSHNR-LT 283 (727)
T ss_dssp -------CCCCCCEEECTTSC--CS-C-CCGGGGGCCSCSCCBCTTSC------CSCCCGGGGGGTTCCEEECTTSC-CS
T ss_pred cChhhhccCCCCcEEECCCCC--CC-C-CChhhcCCCCCCEEEeeCCc------CcccChhhhCCCCCCEEeCcCCc-CC
Confidence 345677888999999999887 32 3 33335588999999999984 77889889999999999999998 88
Q ss_pred cCCcchhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcccccC
Q 037574 643 KLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLSYM 691 (961)
Q Consensus 643 ~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~~~ 691 (961)
.+|..|++|.+|++|+|++|. +..+|..++.|++|++|+|++|.+...
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred ccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCC
Confidence 999999999999999999886 888998899999999999988887743
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.00 E-value=3.3e-10 Score=111.12 Aligned_cols=130 Identities=18% Similarity=0.151 Sum_probs=107.4
Q ss_pred cCCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhh-
Q 037574 546 SHEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQI- 624 (961)
Q Consensus 546 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i- 624 (961)
...+++.|.+.+|.+. .++......++|+.|++++|. +. . + ..+..+++|++|+|++|. +..+|..+
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~--l~-~-~-~~l~~l~~L~~L~Ls~N~------l~~~~~~~~ 84 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNE--IR-K-L-DGFPLLRRLKTLLVNNNR------ICRIGEGLD 84 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSC--CC-E-E-CCCCCCSSCCEEECCSSC------CCEECSCHH
T ss_pred CcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCC--CC-c-c-cccccCCCCCEEECCCCc------ccccCcchh
Confidence 3568899999999885 455433334499999999987 33 2 2 458899999999999994 77887655
Q ss_pred cCCCCcceEeccCCCCcccCCc--chhccCCCcEeecCCCCCCcccccc----cccCCCCcEEEeCCcccc
Q 037574 625 KRLIHLRYLNLSKNNKIKKLPK--TLCELYNLQTLELSWCSNLRNLPQG----MGKLINLRHVVNVGTPLS 689 (961)
Q Consensus 625 ~~l~~Lr~L~L~~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lP~~----i~~L~~L~~L~l~~~~l~ 689 (961)
+.+++|++|+|++|. +..+|. .+..+++|++|++++|. +..+|.. +..+++|++|+++.|...
T Consensus 85 ~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 85 QALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred hcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 899999999999999 899997 89999999999999988 7888875 889999999999776554
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.99 E-value=9.3e-10 Score=128.41 Aligned_cols=109 Identities=24% Similarity=0.284 Sum_probs=81.5
Q ss_pred ccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcccCCcchhccCC
Q 037574 574 LRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKKLPKTLCELYN 653 (961)
Q Consensus 574 Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~ 653 (961)
|+.|++++|. +. . +|. +..+++|++|+|++|. +..+|..++.+++|++|+|++|. ++.+| .+++|++
T Consensus 443 L~~L~Ls~n~--l~-~-lp~-~~~l~~L~~L~Ls~N~------l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~ 509 (567)
T 1dce_A 443 VRVLHLAHKD--LT-V-LCH-LEQLLLVTHLDLSHNR------LRALPPALAALRCLEVLQASDNA-LENVD-GVANLPR 509 (567)
T ss_dssp CSEEECTTSC--CS-S-CCC-GGGGTTCCEEECCSSC------CCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSS
T ss_pred ceEEEecCCC--CC-C-CcC-ccccccCcEeecCccc------ccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCC
Confidence 6666666664 22 2 334 6777888888888873 66788888888888888888887 77777 6888888
Q ss_pred CcEeecCCCCCCccc--ccccccCCCCcEEEeCCcccccCCcCCC
Q 037574 654 LQTLELSWCSNLRNL--PQGMGKLINLRHVVNVGTPLSYMPKGIE 696 (961)
Q Consensus 654 L~~L~l~~~~~l~~l--P~~i~~L~~L~~L~l~~~~l~~~p~~i~ 696 (961)
|++|+|++|. +..+ |..++.|++|++|++++|.+..+|+.+.
T Consensus 510 L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~ 553 (567)
T 1dce_A 510 LQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 553 (567)
T ss_dssp CCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTT
T ss_pred CcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHH
Confidence 8888888876 6666 7778888888888888888777766543
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.99 E-value=1.1e-09 Score=108.99 Aligned_cols=125 Identities=22% Similarity=0.309 Sum_probs=86.2
Q ss_pred cEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccch-hhhccCCcccEEEccCCChhhhhhhccc-chhhcCCC
Q 037574 551 PHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLS-KVFDQLTCLRTLELSNHDNVLCKVIKKV-PKQIKRLI 628 (961)
Q Consensus 551 r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l~ 628 (961)
+.++++++.+ ..+|..+. .+|+.|++.++. +. .+.+ ..|..+++|++|+|++| . +..+ |..++.++
T Consensus 11 ~~l~~s~~~l-~~ip~~~~--~~l~~L~l~~n~--i~-~~~~~~~~~~l~~L~~L~Ls~N-----~-l~~~~~~~~~~l~ 78 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIP--LHTTELLLNDNE--LG-RISSDGLFGRLPHLVKLELKRN-----Q-LTGIEPNAFEGAS 78 (192)
T ss_dssp TEEECTTSCC-SSCCSCCC--TTCSEEECCSCC--CC-SBCCSCSGGGCTTCCEEECCSS-----C-CCCBCTTTTTTCT
T ss_pred CEEEcCCCCc-CcCccCCC--CCCCEEECCCCc--CC-ccCCccccccCCCCCEEECCCC-----C-CCCcCHhHcCCcc
Confidence 5566666666 44554443 278888888775 32 2222 24778888888888887 3 5554 66788888
Q ss_pred CcceEeccCCCCcccCC-cchhccCCCcEeecCCCCCCccc-ccccccCCCCcEEEeCCcccc
Q 037574 629 HLRYLNLSKNNKIKKLP-KTLCELYNLQTLELSWCSNLRNL-PQGMGKLINLRHVVNVGTPLS 689 (961)
Q Consensus 629 ~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~~~l~ 689 (961)
+|++|+|++|. ++.+| ..+..+++|++|++++|. +..+ |..+..+++|++|++++|.+.
T Consensus 79 ~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 79 HIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 88888888887 66655 347788888888888877 5444 666777888888888777654
No 140
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.96 E-value=3.2e-09 Score=115.48 Aligned_cols=185 Identities=15% Similarity=0.136 Sum_probs=116.1
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhc-cCc-eeEEEEeCCCCCHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKA-NFD-KRIWVSASCPRDEIR 240 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~F~-~~~wv~~s~~~~~~~ 240 (961)
.+++|++..++.+..++... ..+.+.|+|++|+||||+|+.+++. ... .+. ..++++.+......
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~----------~~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~- 87 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG----------NMPHMIISGMPGIGKTTSVHCLAHE--LLGRSYADGVLELNASDDRGID- 87 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC----------CCCCEEEECSTTSSHHHHHHHHHHH--HHGGGHHHHEEEECTTSCCSHH-
T ss_pred HHHHCCHHHHHHHHHHHHcC----------CCCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCCEEEecCccccChH-
Confidence 46899999999999998763 2333899999999999999999883 321 121 23444444332322
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHh-cCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCc-ccc
Q 037574 241 VAKAILESLKGSVSSQVEMETVLQYINEFV-QGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEK-NGT 318 (961)
Q Consensus 241 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~ 318 (961)
.+++++..+.... ..+ .+++.++|+||++ .-....++.+...+.....++.+|+||+... +..
T Consensus 88 ~i~~~~~~~~~~~--------------~~~~~~~~~viiiDe~~-~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~ 152 (323)
T 1sxj_B 88 VVRNQIKHFAQKK--------------LHLPPGKHKIVILDEAD-SMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIE 152 (323)
T ss_dssp HHHTHHHHHHHBC--------------CCCCTTCCEEEEEESGG-GSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHhcc--------------ccCCCCCceEEEEECcc-cCCHHHHHHHHHHHhccCCCceEEEEeCChhhchh
Confidence 2222222221000 011 3568899999997 4445566667666665556778888886543 111
Q ss_pred cccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHH-HHHHH
Q 037574 319 NMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFA-VKILG 388 (961)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLa-i~~~~ 388 (961)
.+. .+...+.+.+++.++..+++...+...+.. --.+..+.|++.++|.|.. +..+.
T Consensus 153 ~l~---------sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 153 PLQ---------SQCAILRYSKLSDEDVLKRLLQIIKLEDVK----YTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp HHH---------TTSEEEECCCCCHHHHHHHHHHHHHHHTCC----BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHH---------hhceEEeecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 111 122689999999999999998875322211 1134577899999999954 44443
No 141
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.94 E-value=8.9e-09 Score=111.93 Aligned_cols=268 Identities=14% Similarity=0.070 Sum_probs=145.8
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVA 242 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 242 (961)
.+++|++..++.+..++....... .....+.|+|++|+|||++|+.+++. .... .++++.+.......+.
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~-----~~~~~vll~G~~GtGKT~la~~i~~~--~~~~---~~~~~~~~~~~~~~l~ 81 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARK-----EPLEHLLLFGPPGLGKTTLAHVIAHE--LGVN---LRVTSGPAIEKPGDLA 81 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHC-----SCCCCCEEECCTTCCCHHHHHHHHHH--HTCC---EEEECTTTCCSHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHHHccC-----CCCCcEEEECCCCCCHHHHHHHHHHH--hCCC---EEEEeccccCChHHHH
Confidence 469999999998888775321000 23356889999999999999999873 3222 2344443332222111
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCC------------------CC
Q 037574 243 KAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGS------------------EG 304 (961)
Q Consensus 243 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~------------------~g 304 (961)
..+... ..+..+|++||+. .......+.+...+.... .+
T Consensus 82 ---------------------~~l~~~-~~~~~~l~lDEi~-~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 82 ---------------------AILANS-LEEGDILFIDEIH-RLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp ---------------------HHHTTT-CCTTCEEEETTTT-SCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred ---------------------HHHHHh-ccCCCEEEEECCc-ccccchHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 111110 1356799999996 334445555554443221 23
Q ss_pred cEEEEecCCCc-ccccccccccccCCCCCc-ceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchH
Q 037574 305 SRILVTRRGEK-NGTNMTEIGLGEKDGTNM-TEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPF 382 (961)
Q Consensus 305 s~ilvTtR~~~-v~~~~~~~~~~~~~~~~~-~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PL 382 (961)
..+|.||.... +...+ ..+. ..+.+.+++.++..+++.+.+...... --.+..+.|++.++|.|-
T Consensus 139 ~~~i~~t~~~~~~~~~l---------~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~G~~r 205 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPL---------LSRFGIVEHLEYYTPEELAQGVMRDARLLGVR----ITEEAALEIGRRSRGTMR 205 (324)
T ss_dssp CEEEEEESCCSSCSCST---------TTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC----CCHHHHHHHHHHSCSCHH
T ss_pred EEEEEeCCCcccCCHHH---------HhcccEEEecCCCCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHccCCHH
Confidence 45666665442 21111 1112 578999999999999998876433221 123567888999999998
Q ss_pred HHHHHHhhccC------C--CCHHHHHHHhhhhhcccchhhhhccCCCCcchhhhHhhhcCCChHHHHHhhHhc-cCCCC
Q 037574 383 AVKILGSLLRF------K--TSIEEWQSVLDSEIWNLDSKICKRAGVGDEYFSPLLLSYYDLSPALKKCFLYCS-IFPKN 453 (961)
Q Consensus 383 ai~~~~~~l~~------~--~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~a-~fp~~ 453 (961)
.+..+...+.. . -+.+....++... ...+..++...+..+..+. .|..+
T Consensus 206 ~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~----------------------~~~~~~l~~~e~~~i~~~~~~~~g~ 263 (324)
T 1hqc_A 206 VAKRLFRRVRDFAQVAGEEVITRERALEALAAL----------------------GLDELGLEKRDREILEVLILRFGGG 263 (324)
T ss_dssp HHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHH----------------------TCCTTCCCHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----------------------cccccCCCHHHHHHHHHHHHHhcCC
Confidence 77766544321 1 2233333333221 1112334444444433322 12111
Q ss_pred ----------cccChHHHHH----HHHHcCccccc-ccccHHHHHHHHHH-HHHhCCCCcc
Q 037574 454 ----------YEIEKDRLIK----LWMAQGYLKLL-ESEDMEVIGEEYFA-NLASRSLFQD 498 (961)
Q Consensus 454 ----------~~i~~~~Li~----~W~a~g~i~~~-~~~~~~~~~~~~~~-~L~~~~ll~~ 498 (961)
..+++..+.+ +-+..|++... .+....+.|.+||+ ++.+|+|+|+
T Consensus 264 ~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 264 PVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred CchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 1234443333 35567888643 34557788889997 8999998875
No 142
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.94 E-value=1.8e-09 Score=119.22 Aligned_cols=138 Identities=22% Similarity=0.235 Sum_probs=112.7
Q ss_pred CcCCCccEEEEEeccCCCCCccccc-CCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccch-
Q 037574 545 SSHEKFPHLMITFESDQGAFPNSVY-NQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPK- 622 (961)
Q Consensus 545 ~~~~~~r~l~l~~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~- 622 (961)
..+..++.|++++|.+....+..+. .+++|+.|++++|. +. .+.+..|..+++|++|+|++| . +..+|.
T Consensus 36 ~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~--i~-~i~~~~~~~l~~L~~L~Ls~N-----~-l~~~~~~ 106 (361)
T 2xot_A 36 SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH--LN-FISSEAFVPVPNLRYLDLSSN-----H-LHTLDEF 106 (361)
T ss_dssp SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC--CC-EECTTTTTTCTTCCEEECCSS-----C-CCEECTT
T ss_pred cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc--CC-ccChhhccCCCCCCEEECCCC-----c-CCcCCHH
Confidence 3456789999999988654455566 89999999999987 44 445667899999999999999 4 676654
Q ss_pred hhcCCCCcceEeccCCCCcccC-CcchhccCCCcEeecCCCCCCccccccc----ccCCCCcEEEeCCcccccCCc
Q 037574 623 QIKRLIHLRYLNLSKNNKIKKL-PKTLCELYNLQTLELSWCSNLRNLPQGM----GKLINLRHVVNVGTPLSYMPK 693 (961)
Q Consensus 623 ~i~~l~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lP~~i----~~L~~L~~L~l~~~~l~~~p~ 693 (961)
.+..+.+|++|+|++|. +..+ |..+..+++|++|+|++|. +..+|..+ ..+++|++|++++|++..+|.
T Consensus 107 ~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 180 (361)
T 2xot_A 107 LFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL 180 (361)
T ss_dssp TTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCCCH
T ss_pred HhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCccCH
Confidence 58899999999999999 7766 5789999999999999987 88898775 579999999999998888774
No 143
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.92 E-value=3.3e-09 Score=105.42 Aligned_cols=105 Identities=24% Similarity=0.410 Sum_probs=59.0
Q ss_pred CCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccc-hhhcCCCCcceEeccCCCCcccCC-cchh
Q 037574 572 KKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVP-KQIKRLIHLRYLNLSKNNKIKKLP-KTLC 649 (961)
Q Consensus 572 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~i~~lp-~~i~ 649 (961)
++|+.|++.++. +. . ++..|..+++|++|+|++| . +..++ ..|..+++|++|+|++|. +..+| ..+.
T Consensus 31 ~~l~~L~L~~n~--i~-~-ip~~~~~l~~L~~L~Ls~N-----~-i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~ 99 (193)
T 2wfh_A 31 RDVTELYLDGNQ--FT-L-VPKELSNYKHLTLIDLSNN-----R-ISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFD 99 (193)
T ss_dssp TTCCEEECCSSC--CC-S-CCGGGGGCTTCCEEECCSS-----C-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTT
T ss_pred CCCCEEECCCCc--Cc-h-hHHHhhcccCCCEEECCCC-----c-CCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhC
Confidence 456666666554 21 1 2344566666666666666 2 44443 345666666666666666 55544 3456
Q ss_pred ccCCCcEeecCCCCCCcccccc-cccCCCCcEEEeCCccc
Q 037574 650 ELYNLQTLELSWCSNLRNLPQG-MGKLINLRHVVNVGTPL 688 (961)
Q Consensus 650 ~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~l 688 (961)
.+++|++|+|++|. +..+|.. +..+++|++|++++|.+
T Consensus 100 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 100 GLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp TCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence 66666666666655 5555543 55566666666655544
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.91 E-value=5e-09 Score=102.71 Aligned_cols=125 Identities=25% Similarity=0.423 Sum_probs=74.3
Q ss_pred cEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchh-hcCCCC
Q 037574 551 PHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQ-IKRLIH 629 (961)
Q Consensus 551 r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~-i~~l~~ 629 (961)
+.+.+..+.+ ..+|..+ .++|+.|.+.++. +. .+.+..|..+++|++|+|++|. +..+|.. ++.+++
T Consensus 10 ~~l~~~~~~l-~~~p~~~--~~~l~~L~l~~n~--l~-~~~~~~~~~l~~L~~L~l~~n~------l~~~~~~~~~~l~~ 77 (177)
T 2o6r_A 10 TEIRCNSKGL-TSVPTGI--PSSATRLELESNK--LQ-SLPHGVFDKLTQLTKLSLSQNQ------IQSLPDGVFDKLTK 77 (177)
T ss_dssp TEEECCSSCC-SSCCTTC--CTTCSEEECCSSC--CC-CCCTTTTTTCTTCSEEECCSSC------CCCCCTTTTTTCTT
T ss_pred CEEEecCCCC-ccCCCCC--CCCCcEEEeCCCc--cc-EeCHHHhcCcccccEEECCCCc------ceEeChhHccCCCc
Confidence 3455554444 2333222 2567777777665 22 3344456667777777777763 5555443 466777
Q ss_pred cceEeccCCCCcccCCcc-hhccCCCcEeecCCCCCCcccccc-cccCCCCcEEEeCCcccc
Q 037574 630 LRYLNLSKNNKIKKLPKT-LCELYNLQTLELSWCSNLRNLPQG-MGKLINLRHVVNVGTPLS 689 (961)
Q Consensus 630 Lr~L~L~~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~l~ 689 (961)
|++|+|++|. ++.+|.. +..+++|++|++++|. +..+|.. +..+++|++|++++|.+.
T Consensus 78 L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 78 LTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCEEECCCCC-ccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 7777777776 6666543 5667777777777665 6666654 355777777777666544
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.90 E-value=1.7e-11 Score=122.92 Aligned_cols=113 Identities=24% Similarity=0.272 Sum_probs=72.9
Q ss_pred cccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcccC
Q 037574 565 PNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKKL 644 (961)
Q Consensus 565 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~l 644 (961)
|..+..+++|++|++++|. +. . ++ .+..+++|++|+|++| . +..+|..+..+++|++|+|++|. +..+
T Consensus 41 ~~~~~~l~~L~~L~ls~n~--l~-~-l~-~~~~l~~L~~L~l~~n-----~-l~~l~~~~~~~~~L~~L~L~~N~-l~~l 108 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNN--IE-K-IS-SLSGMENLRILSLGRN-----L-IKKIENLDAVADTLEELWISYNQ-IASL 108 (198)
T ss_dssp HHHHHHTTTCSEEECSEEE--ES-C-CC-CHHHHTTCCEEEEEEE-----E-ECSCSSHHHHHHHCSEEEEEEEE-CCCH
T ss_pred hHHHhcCCCCCEEECCCCC--Cc-c-cc-ccccCCCCCEEECCCC-----C-cccccchhhcCCcCCEEECcCCc-CCcC
Confidence 3466667777777776664 22 1 23 4666677777777776 3 55666666666777777777776 6666
Q ss_pred CcchhccCCCcEeecCCCCCCccccc--ccccCCCCcEEEeCCcccccC
Q 037574 645 PKTLCELYNLQTLELSWCSNLRNLPQ--GMGKLINLRHVVNVGTPLSYM 691 (961)
Q Consensus 645 p~~i~~L~~L~~L~l~~~~~l~~lP~--~i~~L~~L~~L~l~~~~l~~~ 691 (961)
| .+..+++|++|++++|. +..+|. .+..+++|++|++++|.+...
T Consensus 109 ~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 109 S-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp H-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred C-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 5 46677777777777665 555553 566677777777766665443
No 146
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.85 E-value=3.6e-09 Score=123.41 Aligned_cols=96 Identities=25% Similarity=0.361 Sum_probs=58.1
Q ss_pred cccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCcccccccccCCCCc
Q 037574 600 CLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQGMGKLINLR 679 (961)
Q Consensus 600 ~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~ 679 (961)
.|++|+|++|. +..+|. ++.+++|++|+|++|. ++.+|..+++|++|++|+|++|. +..+| .++.|++|+
T Consensus 442 ~L~~L~Ls~n~------l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~ 511 (567)
T 1dce_A 442 DVRVLHLAHKD------LTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQ 511 (567)
T ss_dssp TCSEEECTTSC------CSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCC
T ss_pred CceEEEecCCC------CCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCc
Confidence 35666666662 555555 6666666666666666 55666666666666666666655 55565 566666666
Q ss_pred EEEeCCcccccC--CcCCCCCCCCCcCC
Q 037574 680 HVVNVGTPLSYM--PKGIERWSCLRTLS 705 (961)
Q Consensus 680 ~L~l~~~~l~~~--p~~i~~L~~L~~L~ 705 (961)
+|++++|.+..+ |..++.+++|+.|.
T Consensus 512 ~L~Ls~N~l~~~~~p~~l~~l~~L~~L~ 539 (567)
T 1dce_A 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLN 539 (567)
T ss_dssp EEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred EEECCCCCCCCCCCcHHHhcCCCCCEEE
Confidence 666666666655 55555555555443
No 147
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.85 E-value=7.6e-09 Score=102.79 Aligned_cols=99 Identities=30% Similarity=0.474 Sum_probs=84.9
Q ss_pred CcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcccCC-cchhccCCCcEeecCCCCCCccccc-ccccCC
Q 037574 599 TCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKKLP-KTLCELYNLQTLELSWCSNLRNLPQ-GMGKLI 676 (961)
Q Consensus 599 ~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~ 676 (961)
+.|++|+|++|. +..+|..+..+++|++|+|++|. ++.++ ..+.++++|++|++++|. +..+|. .+..++
T Consensus 31 ~~l~~L~L~~n~------i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~ 102 (193)
T 2wfh_A 31 RDVTELYLDGNQ------FTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLK 102 (193)
T ss_dssp TTCCEEECCSSC------CCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCT
T ss_pred CCCCEEECCCCc------CchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCC
Confidence 589999999994 78899999999999999999999 77776 569999999999999988 777764 688999
Q ss_pred CCcEEEeCCcccccCCcC-CCCCCCCCcCC
Q 037574 677 NLRHVVNVGTPLSYMPKG-IERWSCLRTLS 705 (961)
Q Consensus 677 ~L~~L~l~~~~l~~~p~~-i~~L~~L~~L~ 705 (961)
+|++|++++|.+..+|.+ +..+++|+.|.
T Consensus 103 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 103 SLRLLSLHGNDISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence 999999999999988875 56666666554
No 148
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.84 E-value=5.5e-09 Score=103.85 Aligned_cols=117 Identities=18% Similarity=0.317 Sum_probs=90.6
Q ss_pred cEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchh--hcCCCCcceEeccCCCCcccC-Ccchhcc
Q 037574 575 RSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQ--IKRLIHLRYLNLSKNNKIKKL-PKTLCEL 651 (961)
Q Consensus 575 r~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~--i~~l~~Lr~L~L~~~~~i~~l-p~~i~~L 651 (961)
++++++++. +. . +|..+ ...|++|+|++|. +..++.. ++.+++|++|+|++|. ++.+ |..+.++
T Consensus 11 ~~l~~s~~~--l~-~-ip~~~--~~~l~~L~l~~n~------i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l 77 (192)
T 1w8a_A 11 TTVDCTGRG--LK-E-IPRDI--PLHTTELLLNDNE------LGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGA 77 (192)
T ss_dssp TEEECTTSC--CS-S-CCSCC--CTTCSEEECCSCC------CCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTC
T ss_pred CEEEcCCCC--cC-c-CccCC--CCCCCEEECCCCc------CCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCc
Confidence 677887765 22 2 22222 2389999999994 7777653 8999999999999999 7766 6789999
Q ss_pred CCCcEeecCCCCCCccccc-ccccCCCCcEEEeCCcccccC-CcCCCCCCCCCcCC
Q 037574 652 YNLQTLELSWCSNLRNLPQ-GMGKLINLRHVVNVGTPLSYM-PKGIERWSCLRTLS 705 (961)
Q Consensus 652 ~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~l~~~-p~~i~~L~~L~~L~ 705 (961)
++|++|++++|. +..+|. .+..+++|++|++++|++..+ |..+..+++|+.|.
T Consensus 78 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 78 SHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp TTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred ccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 999999999988 777764 488899999999999998866 45577666666654
No 149
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.81 E-value=1.3e-08 Score=110.95 Aligned_cols=285 Identities=13% Similarity=0.121 Sum_probs=145.3
Q ss_pred CCCccEEEeccCCCccccccchhhhcc-CCcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcccCC-cch
Q 037574 571 QKKLRSLGVEHGGGFMNGIVLSKVFDQ-LTCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKKLP-KTL 648 (961)
Q Consensus 571 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~-l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp-~~i 648 (961)
+.+++.|.+.++- ...... .+.. +++|++|||++|. +......-+.++.++++.+..+ .+| ..+
T Consensus 24 ~~~l~~L~l~g~i---~~~~~~-~l~~~l~~L~~LdLs~n~------i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF 89 (329)
T 3sb4_A 24 ANSITHLTLTGKL---NAEDFR-HLRDEFPSLKVLDISNAE------IKMYSGKAGTYPNGKFYIYMAN----FVPAYAF 89 (329)
T ss_dssp HHHCSEEEEEEEE---CHHHHH-HHHHSCTTCCEEEEEEEE------ECCEEESSSSSGGGCCEEECTT----EECTTTT
T ss_pred hCceeEEEEeccc---cHHHHH-HHHHhhccCeEEecCcce------eEEecCcccccccccccccccc----ccCHHHh
Confidence 5578888887642 101111 2334 7889999999983 4421111223333556665544 344 456
Q ss_pred hc--------cCCCcEeecCCCCCCcccccc-cccCCCCcEEEeCCcccccCCcC-CCCCCCCCcCCceEecCCCCCCCC
Q 037574 649 CE--------LYNLQTLELSWCSNLRNLPQG-MGKLINLRHVVNVGTPLSYMPKG-IERWSCLRTLSEFIVSGGNDDKKA 718 (961)
Q Consensus 649 ~~--------L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~ 718 (961)
.+ +.+|+.|++.. . +..++.. +..+++|+.|++..|.+..++.. +..+.++..+. ...
T Consensus 90 ~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~-----~~~----- 157 (329)
T 3sb4_A 90 SNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIP-----LGS----- 157 (329)
T ss_dssp EEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEEC-----TTC-----
T ss_pred cccccccccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEec-----Ccc-----
Confidence 67 99999999987 3 8888754 78899999999988877776654 33332222222 110
Q ss_pred CChhhhhcccccCCceeEcCCCCCChhhhHhhccccccccC-ceeEEecCCCCcCCCccchHHHHhcCCCCCCcCceEEe
Q 037574 719 SKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLL-ALGISFDRDDEEGRKKEDDEAVVEGLELPSNLESMEMF 797 (961)
Q Consensus 719 ~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~ 797 (961)
......+..+. . ..+..+..|+ .+.+..... -...+......+.++..+.+.
T Consensus 158 --~~~~~~~~~i~-~----------------~~f~~~~~L~~~i~~~~~~~--------l~~~~~~~~~~~~~~~~l~~~ 210 (329)
T 3sb4_A 158 --SDAYRFKNRWE-H----------------FAFIEGEPLETTIQVGAMGK--------LEDEIMKAGLQPRDINFLTIE 210 (329)
T ss_dssp --THHHHTSTTTT-T----------------SCEEESCCCEEEEEECTTCC--------HHHHHHHTTCCGGGCSEEEEE
T ss_pred --hhhhhcccccc-c----------------cccccccccceeEEecCCCc--------HHHHHhhcccCccccceEEEe
Confidence 00000000000 0 0111122222 111111100 011122222223455555555
Q ss_pred eecCccc-cccccccccCceEEEEeCCCCCCcCC--CCCCCCccceeeeccccCceEeCccccccCCCCCCCcccccCcc
Q 037574 798 YYRGESI-SLMMIMLSNKLRSLTLDRCVNLKQLP--GLGGLPSLESLTLRNMKRIEKVGNEFLLTDRTSSTGTAVSAFPK 874 (961)
Q Consensus 798 ~~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~l~--~l~~lp~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~fp~ 874 (961)
+...... ..+ ...+++|+.|+|.+| .+..+| .+..+++|+.|+|.+ +++.++...+ ..+++
T Consensus 211 ~~l~~~~~~~l-~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~--ni~~I~~~aF------------~~~~~ 274 (329)
T 3sb4_A 211 GKLDNADFKLI-RDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPH--NLKTIGQRVF------------SNCGR 274 (329)
T ss_dssp ECCCHHHHHHH-HHHCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCT--TCCEECTTTT------------TTCTT
T ss_pred eeecHHHHHHH-HHhcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCc--ccceehHHHh------------hCChh
Confidence 5321111 100 113567777777765 355565 366777777777765 2666665543 34556
Q ss_pred cc-eeeccccccccccccccccCcccccccccceecccccccCcCCCCCCC--CCCCCeEE
Q 037574 875 LK-SLVFLKMKAWREWKYKTKRGKHYKIMPCLCSLTIGYCNELEMLPAEHF--PDTLKDLK 932 (961)
Q Consensus 875 L~-~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~l--~~sL~~L~ 932 (961)
|+ .|.+.+ +++.+. ......+++|+.|.+.. ++++.++...| ..+|+.|.
T Consensus 275 L~~~l~l~~--~l~~I~-----~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 275 LAGTLELPA--SVTAIE-----FGAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CCEEEEECT--TCCEEC-----TTTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred ccEEEEEcc--cceEEc-----hhhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 66 666644 333333 12233567777777755 56777776555 23366554
No 150
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.79 E-value=4.7e-08 Score=106.35 Aligned_cols=183 Identities=14% Similarity=0.105 Sum_probs=116.3
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhcc-Cc-eeEEEEeCCCCCHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKAN-FD-KRIWVSASCPRDEIR 240 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-F~-~~~wv~~s~~~~~~~ 240 (961)
.+++|++..++.+..++.. +..+.+.|+|++|+||||+|+.+++. .... +. ..+.+..+..... .
T Consensus 25 ~~~~g~~~~~~~l~~~l~~----------~~~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~-~ 91 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKT----------GSMPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASDERGI-N 91 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHH----------TCCCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTCHHHH-H
T ss_pred HHhhCCHHHHHHHHHHHHc----------CCCCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccccCch-H
Confidence 4589999999999999876 33445899999999999999999883 2211 11 2333443321111 1
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHH--h-cCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCcc-
Q 037574 241 VAKAILESLKGSVSSQVEMETVLQYINEF--V-QGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKN- 316 (961)
Q Consensus 241 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v- 316 (961)
.++..+.. .... + .+++.++|+||++ ......++.+...+.....++++|+||....-
T Consensus 92 ~~~~~~~~-----------------~~~~~~~~~~~~~vliiDe~~-~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l 153 (327)
T 1iqp_A 92 VIREKVKE-----------------FARTKPIGGASFKIIFLDEAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSSKI 153 (327)
T ss_dssp TTHHHHHH-----------------HHHSCCGGGCSCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred HHHHHHHH-----------------HHhhCCcCCCCCeEEEEeCCC-cCCHHHHHHHHHHHHhcCCCCeEEEEeCCcccc
Confidence 11111111 1110 1 2578899999996 44556677777777666667888888865432
Q ss_pred cccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHHHh
Q 037574 317 GTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKILGS 389 (961)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~~~ 389 (961)
...+.. +...+.+.+++.++..+++...+...... --.+..+.|++.++|.|-.+..+..
T Consensus 154 ~~~l~s---------r~~~~~~~~l~~~~~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 154 IEPIQS---------RCAIFRFRPLRDEDIAKRLRYIAENEGLE----LTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp CHHHHH---------TEEEEECCCCCHHHHHHHHHHHHHTTTCE----ECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHh---------hCcEEEecCCCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 111111 12578999999999999998876433221 1234677889999999986655443
No 151
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.78 E-value=8.1e-08 Score=101.66 Aligned_cols=180 Identities=12% Similarity=0.111 Sum_probs=106.0
Q ss_pred cccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhc------cCceeEEEEeCCCCCH
Q 037574 165 FHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKA------NFDKRIWVSASCPRDE 238 (961)
Q Consensus 165 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~------~F~~~~wv~~s~~~~~ 238 (961)
+.||+++++++...|...-.+ +..+.+.|+|++|+|||++|+.|++...... .| .++.|++....+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~------~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~ 94 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMS------SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGM 94 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT------TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--
T ss_pred cCCHHHHHHHHHHHHHHHhcC------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCH
Confidence 789999999999887753221 4567899999999999999999998532111 12 3566777777888
Q ss_pred HHHHHHHHHHhcCCCCC-cccHHHHHHHHHHH--hcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCc
Q 037574 239 IRVAKAILESLKGSVSS-QVEMETVLQYINEF--VQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEK 315 (961)
Q Consensus 239 ~~~~~~il~~l~~~~~~-~~~~~~~~~~l~~~--l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 315 (961)
..++..|++++.+.... ....+.+...+... -.++++++|||++..-...+....+............||.++...+
T Consensus 95 ~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 95 DALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 99999999999664321 12233333333332 2467899999999521122222222221111111223344444433
Q ss_pred cccc-ccccccccCCCCCcceeecCCCChHHHHHHHHHHH
Q 037574 316 NGTN-MTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIA 354 (961)
Q Consensus 316 v~~~-~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 354 (961)
.... +... + ........+.+.|.+.+|-.+++++++
T Consensus 175 ~~~~~L~~~-v--~SR~~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 175 TIREQINIM-P--SLKAHFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp CCHHHHHTC-H--HHHTTEEEEECCCCCHHHHHHHHHHHH
T ss_pred cchhhcchh-h--hccCCceEEEeCCCCHHHHHHHHHHHH
Confidence 2221 1100 0 000111568999999999999998875
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.77 E-value=1.6e-08 Score=98.58 Aligned_cols=89 Identities=27% Similarity=0.450 Sum_probs=63.0
Q ss_pred CcccEEEccCCChhhhhhhccc-chhhcCCCCcceEeccCCCCcccCCcc-hhccCCCcEeecCCCCCCcccccc-cccC
Q 037574 599 TCLRTLELSNHDNVLCKVIKKV-PKQIKRLIHLRYLNLSKNNKIKKLPKT-LCELYNLQTLELSWCSNLRNLPQG-MGKL 675 (961)
Q Consensus 599 ~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~-i~~L 675 (961)
++|++|+|++| . +..+ |..++.+++|++|+|++|. ++.+|.. +.++++|++|+|++|. +..+|.. +..+
T Consensus 33 ~~L~~L~Ls~N-----~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l 104 (174)
T 2r9u_A 33 TDKQRLWLNNN-----Q-ITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNL 104 (174)
T ss_dssp TTCSEEECCSS-----C-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred CCCcEEEeCCC-----C-ccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCc-cceeCHHHhccc
Confidence 66777777777 3 5555 5567777788888888777 7777754 4677788888887766 6677765 6777
Q ss_pred CCCcEEEeCCcccccCCcCC
Q 037574 676 INLRHVVNVGTPLSYMPKGI 695 (961)
Q Consensus 676 ~~L~~L~l~~~~l~~~p~~i 695 (961)
++|++|++++|.+...+..+
T Consensus 105 ~~L~~L~L~~N~~~c~~~~~ 124 (174)
T 2r9u_A 105 KSLTHIYLYNNPWDCECRDI 124 (174)
T ss_dssp TTCSEEECCSSCBCTTBGGG
T ss_pred cCCCEEEeCCCCcccccccH
Confidence 78888888777766555433
No 153
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.72 E-value=8.1e-10 Score=110.63 Aligned_cols=105 Identities=25% Similarity=0.370 Sum_probs=87.5
Q ss_pred chhhhccCCcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcccCCcchhccCCCcEeecCCCCCCccccc
Q 037574 591 LSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKKLPKTLCELYNLQTLELSWCSNLRNLPQ 670 (961)
Q Consensus 591 ~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~ 670 (961)
++..+..+++|++|+|++| . +..+| .++.+++|++|++++|. +..+|..+..+++|++|++++|. +..+|
T Consensus 40 l~~~~~~l~~L~~L~ls~n-----~-l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~-l~~l~- 109 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTN-----N-IEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLS- 109 (198)
T ss_dssp CHHHHHHTTTCSEEECSEE-----E-ESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE-CCCHH-
T ss_pred hhHHHhcCCCCCEEECCCC-----C-Ccccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc-CCcCC-
Confidence 4456889999999999998 4 77788 88999999999999998 88999988889999999999986 78887
Q ss_pred ccccCCCCcEEEeCCcccccCCc--CCCCCCCCCcCC
Q 037574 671 GMGKLINLRHVVNVGTPLSYMPK--GIERWSCLRTLS 705 (961)
Q Consensus 671 ~i~~L~~L~~L~l~~~~l~~~p~--~i~~L~~L~~L~ 705 (961)
.+..+++|++|++++|.+..+|. .+..+++|+.|.
T Consensus 110 ~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 110 GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEE
T ss_pred ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEE
Confidence 68889999999999988876654 455555555554
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.71 E-value=3e-08 Score=96.59 Aligned_cols=95 Identities=27% Similarity=0.397 Sum_probs=81.7
Q ss_pred ccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcccC-CcchhccCCCcEeecCCCCCCcccccc-cccCCCC
Q 037574 601 LRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKKL-PKTLCELYNLQTLELSWCSNLRNLPQG-MGKLINL 678 (961)
Q Consensus 601 Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L 678 (961)
-+.++++++ . +..+|..+. .+|++|+|++|. +..+ |..+.++++|++|+|++|. +..+|.. +..+++|
T Consensus 14 ~~~l~~~~n-----~-l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L 83 (174)
T 2r9u_A 14 QTLVNCQNI-----R-LASVPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQL 83 (174)
T ss_dssp SSEEECCSS-----C-CSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred CcEEEeCCC-----C-CCccCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchh
Confidence 368899998 3 888998775 899999999999 7777 5689999999999999987 8889876 5889999
Q ss_pred cEEEeCCcccccCCcC-CCCCCCCCcCC
Q 037574 679 RHVVNVGTPLSYMPKG-IERWSCLRTLS 705 (961)
Q Consensus 679 ~~L~l~~~~l~~~p~~-i~~L~~L~~L~ 705 (961)
++|++++|++..+|.+ +..+++|+.|.
T Consensus 84 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 84 TQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred hEEECCCCccceeCHHHhccccCCCEEE
Confidence 9999999999999886 77777777664
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.67 E-value=5e-08 Score=94.62 Aligned_cols=84 Identities=30% Similarity=0.485 Sum_probs=46.6
Q ss_pred CcccEEEccCCChhhhhhhccc-chhhcCCCCcceEeccCCCCcccCCcc-hhccCCCcEeecCCCCCCcccccc-cccC
Q 037574 599 TCLRTLELSNHDNVLCKVIKKV-PKQIKRLIHLRYLNLSKNNKIKKLPKT-LCELYNLQTLELSWCSNLRNLPQG-MGKL 675 (961)
Q Consensus 599 ~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~-i~~L 675 (961)
+.|++|+|++| . +..+ |..+..+++|++|+|++|. +..+|.. +..+++|++|+|++|. +..+|.. +..+
T Consensus 30 ~~l~~L~L~~N-----~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l 101 (170)
T 3g39_A 30 TTTQVLYLYDN-----Q-ITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNL 101 (170)
T ss_dssp TTCSEEECCSS-----C-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred CCCcEEEcCCC-----c-CCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCCc-cCEeCHHHhcCC
Confidence 45556666665 2 4444 4445566666666666665 5555543 3556666666666554 5555543 5556
Q ss_pred CCCcEEEeCCccccc
Q 037574 676 INLRHVVNVGTPLSY 690 (961)
Q Consensus 676 ~~L~~L~l~~~~l~~ 690 (961)
++|++|++++|.+..
T Consensus 102 ~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 102 KSLTHIWLLNNPWDC 116 (170)
T ss_dssp TTCCEEECCSSCBCT
T ss_pred CCCCEEEeCCCCCCC
Confidence 666666665555443
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.65 E-value=4.4e-08 Score=95.01 Aligned_cols=96 Identities=28% Similarity=0.402 Sum_probs=81.7
Q ss_pred cccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcccC-CcchhccCCCcEeecCCCCCCcccccc-cccCCC
Q 037574 600 CLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKKL-PKTLCELYNLQTLELSWCSNLRNLPQG-MGKLIN 677 (961)
Q Consensus 600 ~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~ 677 (961)
..++|+++++ . +..+|..+. .+|++|+|++|. ++.+ |..+.++.+|++|+|++|. +..+|.. +..+++
T Consensus 10 ~~~~l~~s~n-----~-l~~ip~~~~--~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~ 79 (170)
T 3g39_A 10 SGTTVDCSGK-----S-LASVPTGIP--TTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQ 79 (170)
T ss_dssp ETTEEECTTS-----C-CSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTT
T ss_pred CCCEEEeCCC-----C-cCccCccCC--CCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCC
Confidence 3578999998 4 888998774 899999999999 8877 5679999999999999987 8888876 588999
Q ss_pred CcEEEeCCcccccCCcC-CCCCCCCCcCC
Q 037574 678 LRHVVNVGTPLSYMPKG-IERWSCLRTLS 705 (961)
Q Consensus 678 L~~L~l~~~~l~~~p~~-i~~L~~L~~L~ 705 (961)
|++|+++.|++..+|.+ +..+++|+.|.
T Consensus 80 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 80 LTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 99999999999998875 67777776664
No 157
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.61 E-value=3.1e-07 Score=101.93 Aligned_cols=196 Identities=13% Similarity=0.169 Sum_probs=114.3
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVA 242 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 242 (961)
.+++|++..++.+...+... .....+.|+|++|+||||+|+.+.+.......+.. ..+......
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~---------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-------~~~~~~~~~ 79 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLG---------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-------TPCGVCDNC 79 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHT---------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS-------SCCSSSHHH
T ss_pred hhccCcHHHHHHHHHHHHhC---------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC-------CCCcccHHH
Confidence 35999999999999998753 22457899999999999999999873211111100 000000000
Q ss_pred HHHHHHh-------cCCC-CCcccHHHHHHHHHHH-hcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCC
Q 037574 243 KAILESL-------KGSV-SSQVEMETVLQYINEF-VQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRG 313 (961)
Q Consensus 243 ~~il~~l-------~~~~-~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 313 (961)
..+.... .... ....+...+...+... ..+++.++|+||+. .-+....+.+...+.....+..+|++|..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 158 (373)
T 1jr3_A 80 REIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVH-MLSRHSFNALLKTLEEPPEHVKFLLATTD 158 (373)
T ss_dssp HHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGG-GSCHHHHHHHHHHHHSCCSSEEEEEEESC
T ss_pred HHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcc-hhcHHHHHHHHHHHhcCCCceEEEEEeCC
Confidence 1111000 0000 0111222222221111 13567899999996 44556677777777665566777777764
Q ss_pred Cc-ccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHHH
Q 037574 314 EK-NGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKILG 388 (961)
Q Consensus 314 ~~-v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~~ 388 (961)
.. +...+. .+...+.+.+++.++..+++.+.+...+.. --.+....|++.++|.|..+..+.
T Consensus 159 ~~~l~~~l~---------sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~----~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 159 PQKLPVTIL---------SRCLQFHLKALDVEQIRHQLEHILNEEHIA----HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp GGGSCHHHH---------TTSEEEECCCCCHHHHHHHHHHHHHHHTCC----BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred hHhCcHHHH---------hheeEeeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 43 111111 122789999999999999998765321111 113456789999999998776654
No 158
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.60 E-value=1.1e-07 Score=92.88 Aligned_cols=108 Identities=22% Similarity=0.286 Sum_probs=90.6
Q ss_pred cCCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchh-h
Q 037574 546 SHEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQ-I 624 (961)
Q Consensus 546 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~-i 624 (961)
...++++|.+.++.+....+..+..+++|++|++.+|. +. .+.+..|..+++|++|+|++|. +..+|.. +
T Consensus 26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~-~~~~~~~~~l~~L~~L~l~~N~------l~~~~~~~~ 96 (177)
T 2o6r_A 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ--IQ-SLPDGVFDKLTKLTILYLHENK------LQSLPNGVF 96 (177)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC--CC-CCCTTTTTTCTTCCEEECCSSC------CCCCCTTTT
T ss_pred CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc--ce-EeChhHccCCCccCEEECCCCC------ccccCHHHh
Confidence 45789999999998865445567889999999999986 43 4455668899999999999994 7777654 6
Q ss_pred cCCCCcceEeccCCCCcccCCcc-hhccCCCcEeecCCCC
Q 037574 625 KRLIHLRYLNLSKNNKIKKLPKT-LCELYNLQTLELSWCS 663 (961)
Q Consensus 625 ~~l~~Lr~L~L~~~~~i~~lp~~-i~~L~~L~~L~l~~~~ 663 (961)
+.+++|++|+|++|. ++.+|.. +..+++|++|++++|.
T Consensus 97 ~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 97 DKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence 899999999999998 8888865 5789999999999987
No 159
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.53 E-value=4.1e-07 Score=98.43 Aligned_cols=182 Identities=13% Similarity=0.046 Sum_probs=112.2
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCc-eeEEEEeCCCCCHHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFD-KRIWVSASCPRDEIRV 241 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~ 241 (961)
.+++|++..++.+..++.. +..+.+.|+|++|+|||++|+.+++... ...+. ..+.++.+......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~----------~~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~-- 83 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVER----------KNIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGID-- 83 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTT----------TCCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCTT--
T ss_pred HHHhCCHHHHHHHHHHHhC----------CCCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccChH--
Confidence 4589999999999888765 2233389999999999999999987310 11111 23334443321110
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHH--h-cCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCc-cc
Q 037574 242 AKAILESLKGSVSSQVEMETVLQYINEF--V-QGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEK-NG 317 (961)
Q Consensus 242 ~~~il~~l~~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~ 317 (961)
...+....+... + .+++.++|+|++. .-.....+.+...+.....++.+|+||.... +.
T Consensus 84 ----------------~~~~~~~~~~~~~~~~~~~~~vliiDe~~-~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~ 146 (319)
T 2chq_A 84 ----------------VVRHKIKEFARTAPIGGAPFKIIFLDEAD-ALTADAQAALRRTMEMYSKSCRFILSCNYVSRII 146 (319)
T ss_dssp ----------------TSSHHHHHHHHSCCSSSCCCEEEEEETGG-GSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSC
T ss_pred ----------------HHHHHHHHHHhcCCCCCCCceEEEEeCCC-cCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcc
Confidence 001111111111 1 2568899999996 3444555666666666556778888876543 11
Q ss_pred ccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHH
Q 037574 318 TNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKIL 387 (961)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~ 387 (961)
..+. .+...+.+.+++.++..+++...+...+.. --.+..+.|++.++|.+-.+...
T Consensus 147 ~~l~---------sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~----i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 147 EPIQ---------SRCAVFRFKPVPKEAMKKRLLEICEKEGVK----ITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp HHHH---------TTCEEEECCCCCHHHHHHHHHHHHHTTCCC----BCHHHHHHHHHTTTTCHHHHHHH
T ss_pred hHHH---------hhCeEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 1111 122689999999999999998876433221 12345677889999999765544
No 160
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.52 E-value=6e-07 Score=97.52 Aligned_cols=290 Identities=12% Similarity=0.073 Sum_probs=160.7
Q ss_pred CCCccEEEEEeccCCCCCcccccC-CCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhc
Q 037574 547 HEKFPHLMITFESDQGAFPNSVYN-QKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIK 625 (961)
Q Consensus 547 ~~~~r~l~l~~~~~~~~~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~ 625 (961)
..++++|.+.++-....+ ..+.. +++|++|+++++. +. . .......++.++.+.+..+ . +. +..|.
T Consensus 24 ~~~l~~L~l~g~i~~~~~-~~l~~~l~~L~~LdLs~n~--i~-~-~~~~~~~~~~~~~~~~~~~-----~-I~--~~aF~ 90 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDF-RHLRDEFPSLKVLDISNAE--IK-M-YSGKAGTYPNGKFYIYMAN-----F-VP--AYAFS 90 (329)
T ss_dssp HHHCSEEEEEEEECHHHH-HHHHHSCTTCCEEEEEEEE--EC-C-EEESSSSSGGGCCEEECTT-----E-EC--TTTTE
T ss_pred hCceeEEEEeccccHHHH-HHHHHhhccCeEEecCcce--eE-E-ecCcccccccccccccccc-----c-cC--HHHhc
Confidence 346888988875321111 23333 7899999999886 21 0 0000112233455555544 1 11 13455
Q ss_pred C--------CCCcceEeccCCCCcccCC-cchhccCCCcEeecCCCCCCccccc-ccccCCCCcEEEeCCcccccCCcCC
Q 037574 626 R--------LIHLRYLNLSKNNKIKKLP-KTLCELYNLQTLELSWCSNLRNLPQ-GMGKLINLRHVVNVGTPLSYMPKGI 695 (961)
Q Consensus 626 ~--------l~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~l~~~p~~i 695 (961)
+ +.+|+.|+|.. . ++.++ ..|..+.+|+.|++..+. +..++. .+..+.++..+....+....
T Consensus 91 ~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~----- 162 (329)
T 3sb4_A 91 NVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYR----- 162 (329)
T ss_dssp EEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHH-----
T ss_pred ccccccccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecCcchhhhh-----
Confidence 6 99999999998 5 88887 468999999999999877 666664 46666666655543311100
Q ss_pred CCCCCCCcCCceEecCCCCCCCCCChhhhhcccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCc
Q 037574 696 ERWSCLRTLSEFIVSGGNDDKKASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKK 775 (961)
Q Consensus 696 ~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 775 (961)
....+.... +..+..|+ ..+.+.... .........-....++..+.+...-..
T Consensus 163 -~~~~i~~~~---------------f~~~~~L~---~~i~~~~~~--~l~~~~~~~~~~~~~~~~l~~~~~l~~------ 215 (329)
T 3sb4_A 163 -FKNRWEHFA---------------FIEGEPLE---TTIQVGAMG--KLEDEIMKAGLQPRDINFLTIEGKLDN------ 215 (329)
T ss_dssp -TSTTTTTSC---------------EEESCCCE---EEEEECTTC--CHHHHHHHTTCCGGGCSEEEEEECCCH------
T ss_pred -ccccccccc---------------cccccccc---eeEEecCCC--cHHHHHhhcccCccccceEEEeeeecH------
Confidence 001111111 11111111 011111111 112222222223456666766654211
Q ss_pred cchHHHHhcCCCCCCcCceEEeeecCccccccccccccCceEEEEeCCCCCCcCC--CCCCCCccc-eeeeccccCceEe
Q 037574 776 EDDEAVVEGLELPSNLESMEMFYYRGESISLMMIMLSNKLRSLTLDRCVNLKQLP--GLGGLPSLE-SLTLRNMKRIEKV 852 (961)
Q Consensus 776 ~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~--~l~~lp~L~-~L~L~~~~~l~~l 852 (961)
.....+.. .+++|+.|++.++....++...+..+.+|+.|+|.++ +..++ .+..+++|+ .+.+.+ .++.+
T Consensus 216 -~~~~~l~~--~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I 288 (329)
T 3sb4_A 216 -ADFKLIRD--YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAI 288 (329)
T ss_dssp -HHHHHHHH--HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEE
T ss_pred -HHHHHHHH--hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEE
Confidence 01111111 1478999999887766664444457889999999886 66666 478899999 999986 68888
Q ss_pred CccccccCCCCCCCcccccCcccceeeccccccccccccccccCcccccccccceec
Q 037574 853 GNEFLLTDRTSSTGTAVSAFPKLKSLVFLKMKAWREWKYKTKRGKHYKIMPCLCSLT 909 (961)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~ 909 (961)
+...+ ..+++|+.|.+... ++..+.. .....+++|+.|+
T Consensus 289 ~~~aF------------~~c~~L~~l~l~~n-~i~~I~~-----~aF~~~~~L~~ly 327 (329)
T 3sb4_A 289 EFGAF------------MGCDNLRYVLATGD-KITTLGD-----ELFGNGVPSKLIY 327 (329)
T ss_dssp CTTTT------------TTCTTEEEEEECSS-CCCEECT-----TTTCTTCCCCEEE
T ss_pred chhhh------------hCCccCCEEEeCCC-ccCccch-----hhhcCCcchhhhc
Confidence 76644 45778888876432 3333321 1223566666664
No 161
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.40 E-value=5.9e-07 Score=89.01 Aligned_cols=45 Identities=27% Similarity=0.383 Sum_probs=38.6
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCC
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
..++||+++++++.+.+.. .....+.|+|++|+|||+||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~----------~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQR----------RTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTS----------SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhc----------CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 4589999999999999875 23456889999999999999999884
No 162
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.36 E-value=4.1e-06 Score=91.90 Aligned_cols=196 Identities=13% Similarity=0.068 Sum_probs=114.5
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCc-eeEEEEeCCCCCHHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFD-KRIWVSASCPRDEIRV 241 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~ 241 (961)
.+++|++..++.+..++... ..+.+.|+|++|+||||+|+.+.+.......+. .++.++.+.......
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~----------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~- 105 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSA----------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI- 105 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCT----------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH-
T ss_pred HHhhCCHHHHHHHHHHHhcC----------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHH-
Confidence 46899999999999998753 223389999999999999999988421111121 233344443323222
Q ss_pred HHHHHHHhcCC-CCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCc-cccc
Q 037574 242 AKAILESLKGS-VSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEK-NGTN 319 (961)
Q Consensus 242 ~~~il~~l~~~-~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~ 319 (961)
+.+.+..+... ....... .....-.+++-+|++|++. .-.......+...+.......++|++|.... +...
T Consensus 106 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~-~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~ 179 (353)
T 1sxj_D 106 VREKVKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEAD-SMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDP 179 (353)
T ss_dssp HTTHHHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred HHHHHHHHhhhcccccchh-----hcccCCCCCceEEEEECCC-ccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcch
Confidence 22222221110 0000000 0001112355699999995 4445556667766665555667777775433 2221
Q ss_pred ccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHHH
Q 037574 320 MTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKILG 388 (961)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~~ 388 (961)
+.. +...+.+.+++.++....+.+.+......- -.+..+.|++.++|.|-.+..+.
T Consensus 180 l~s---------R~~~i~~~~~~~~~~~~~l~~~~~~~~~~i----~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 180 LAS---------QCSKFRFKALDASNAIDRLRFISEQENVKC----DDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp HHH---------HSEEEECCCCCHHHHHHHHHHHHHTTTCCC----CHHHHHHHHHHTSSCHHHHHHHH
T ss_pred hhc---------cCceEEeCCCCHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 111 126789999999999999988764322211 23467889999999998655443
No 163
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.35 E-value=1.3e-05 Score=87.15 Aligned_cols=180 Identities=15% Similarity=0.148 Sum_probs=106.7
Q ss_pred CCccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHH
Q 037574 162 PLEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRV 241 (961)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 241 (961)
-.+++|++..++.+..++....... .....|.|+|++|+|||+||+.+++ .....| +.++.+.....
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~-----~~~~~vll~G~~GtGKT~la~~ia~--~~~~~~---~~~~~~~~~~~--- 94 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRN-----ECLDHILFSGPAGLGKTTLANIISY--EMSANI---KTTAAPMIEKS--- 94 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTT-----SCCCCEEEECSTTSSHHHHHHHHHH--HTTCCE---EEEEGGGCCSH---
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcC-----CCCCeEEEECcCCCCHHHHHHHHHH--HhCCCe---EEecchhccch---
Confidence 3469999999999988887531100 3345689999999999999999977 333222 23333222111
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCC------------------C
Q 037574 242 AKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGS------------------E 303 (961)
Q Consensus 242 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~------------------~ 303 (961)
......+.. ..+..+|++|++. .........+...+.... +
T Consensus 95 ------------------~~~~~~~~~--~~~~~vl~lDEi~-~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T 3pfi_A 95 ------------------GDLAAILTN--LSEGDILFIDEIH-RLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP 153 (338)
T ss_dssp ------------------HHHHHHHHT--CCTTCEEEEETGG-GCCHHHHHHHHHHHHTSCC---------CCCCCCCCC
T ss_pred ------------------hHHHHHHHh--ccCCCEEEEechh-hcCHHHHHHHHHHHHhccchhhcccCccccceecCCC
Confidence 111111111 2466899999996 444555555665554432 1
Q ss_pred CcEEEEecCCCcc-cccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchH
Q 037574 304 GSRILVTRRGEKN-GTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPF 382 (961)
Q Consensus 304 gs~ilvTtR~~~v-~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PL 382 (961)
+..+|.+|..... ...+.. .-...+.+.+++.++...++.+.+..... .--.+..+.|++.+.|.|-
T Consensus 154 ~~~~i~atn~~~~l~~~L~~--------R~~~~i~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~l~~~~~G~~r 221 (338)
T 3pfi_A 154 KFTLIGATTRAGMLSNPLRD--------RFGMQFRLEFYKDSELALILQKAALKLNK----TCEEKAALEIAKRSRSTPR 221 (338)
T ss_dssp CCEEEEEESCGGGSCHHHHT--------TCSEEEECCCCCHHHHHHHHHHHHHHTTC----EECHHHHHHHHHTTTTCHH
T ss_pred CeEEEEeCCCccccCHHHHh--------hcCEEeeCCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHCcCHH
Confidence 2455555554321 111100 11167999999999999999887643221 1224567778889999995
Q ss_pred HHHHH
Q 037574 383 AVKIL 387 (961)
Q Consensus 383 ai~~~ 387 (961)
.+..+
T Consensus 222 ~l~~~ 226 (338)
T 3pfi_A 222 IALRL 226 (338)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 164
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.35 E-value=6.1e-07 Score=92.60 Aligned_cols=178 Identities=11% Similarity=0.077 Sum_probs=100.3
Q ss_pred Cccccc---hHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHH
Q 037574 163 LEFHGR---NVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEI 239 (961)
Q Consensus 163 ~~~vGr---~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 239 (961)
.+|+|+ +..++.+..+... +..+.+.|+|++|+||||||+.+++. .......+.|++++.....
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASG----------DGVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHT----------CSCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS-
T ss_pred hhccCCCCCHHHHHHHHHHHhC----------CCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH-
Confidence 346663 3555666666553 24568999999999999999999883 3333345667775432110
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhh--HHHHHHhccCC-CCC-cEEEEecCCCc
Q 037574 240 RVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRY--WEQLMYSLKSG-SEG-SRILVTRRGEK 315 (961)
Q Consensus 240 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~--~~~l~~~l~~~-~~g-s~ilvTtR~~~ 315 (961)
+. . .+ +.+ .++.+||+||++ ...... .+.+...+... ..+ .++|+||+...
T Consensus 95 -----~~--------~---------~~-~~~-~~~~vliiDe~~-~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 95 -----ST--------A---------LL-EGL-EQFDLICIDDVD-AVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp -----CG--------G---------GG-TTG-GGSSEEEEETGG-GGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred -----HH--------H---------HH-Hhc-cCCCEEEEeccc-cccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 00 0 00 011 356799999996 222222 33344433221 122 24777776432
Q ss_pred c-cccc-cccccccCCCCCc---ceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHHH
Q 037574 316 N-GTNM-TEIGLGEKDGTNM---TEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKILG 388 (961)
Q Consensus 316 v-~~~~-~~~~~~~~~~~~~---~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~~ 388 (961)
- .... ... ..+. ..+.+.+++.++..+++...+..... .--.+..+.|++.++|.+-.+..+.
T Consensus 150 ~~~~~~~~~l------~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 150 MEAGFVLPDL------VSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL----QLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp TTTTCCCHHH------HHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC----CCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHhhhhh------hhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 1 1100 000 0011 57899999999999999887642221 1123567788899999887665443
No 165
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.33 E-value=2e-05 Score=87.60 Aligned_cols=121 Identities=14% Similarity=0.246 Sum_probs=74.0
Q ss_pred ccccCceEEEEeCCCCC----CcCC--CCCCCCccceeeeccccCceEeCccccccCCCCCCCcccccCcccceeecccc
Q 037574 810 MLSNKLRSLTLDRCVNL----KQLP--GLGGLPSLESLTLRNMKRIEKVGNEFLLTDRTSSTGTAVSAFPKLKSLVFLKM 883 (961)
Q Consensus 810 ~~l~~L~~L~L~~~~~~----~~l~--~l~~lp~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~ 883 (961)
..+++|+.+.+.++... ..++ .+..+++|+.+.|.+ +++.++...+ .++++|+.+.+.+
T Consensus 268 ~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF------------~~c~~L~~l~lp~- 332 (401)
T 4fdw_A 268 YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLL------------GGNRKVTQLTIPA- 332 (401)
T ss_dssp TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTT------------TTCCSCCEEEECT-
T ss_pred hCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhh------------cCCCCccEEEECc-
Confidence 35778888888775321 1233 467788899998873 5787776544 3567788887743
Q ss_pred ccccccccccccCcccccccccceecccccccCcCCCCCC---CCCCCCeEEEccccchhhhhhhcccCcCCcccc
Q 037574 884 KAWREWKYKTKRGKHYKIMPCLCSLTIGYCNELEMLPAEH---FPDTLKDLKIISCSKLEKSYEEGKAEWKMFPQI 956 (961)
Q Consensus 884 ~~l~~~~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~---l~~sL~~L~i~~c~~l~~~~~~~~~~~~~~~~~ 956 (961)
+++.+.. .....+ +|+.|.+..+ .+..++... ++.+++.|.+-. +..+.++ ....|...+.+
T Consensus 333 -~l~~I~~-----~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~--~~~~~y~-~a~~W~~f~~~ 397 (401)
T 4fdw_A 333 -NVTQINF-----SAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPA--ESVEKYK-NANGWRDFTNK 397 (401)
T ss_dssp -TCCEECT-----TSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECG--GGHHHHH-HSTTGGGGGGG
T ss_pred -cccEEcH-----HhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCH--HHHHHhh-hccchhhhhhh
Confidence 3433332 122355 8999999874 555555443 355688888754 2233443 33468876544
No 166
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.32 E-value=7.3e-06 Score=91.91 Aligned_cols=181 Identities=15% Similarity=0.164 Sum_probs=102.9
Q ss_pred CccccchHHH---HHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHH
Q 037574 163 LEFHGRNVEK---KNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEI 239 (961)
Q Consensus 163 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 239 (961)
.+++|.+..+ ..+...+.. +..+.+.|+|++|+||||||+.+.+ .....| +.++......
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~----------~~~~~vLL~GppGtGKTtlAr~ia~--~~~~~f-----~~l~a~~~~~ 88 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEA----------GHLHSMILWGPPGTGKTTLAEVIAR--YANADV-----ERISAVTSGV 88 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHH----------TCCCEEEEECSTTSSHHHHHHHHHH--HTTCEE-----EEEETTTCCH
T ss_pred HHhCCcHHHHhchHHHHHHHHc----------CCCcEEEEECCCCCcHHHHHHHHHH--HhCCCe-----EEEEeccCCH
Confidence 4588998887 667777765 4457899999999999999999998 333333 3332211111
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCc--cc
Q 037574 240 RVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEK--NG 317 (961)
Q Consensus 240 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~--v~ 317 (961)
.-++.++... ......+++.+|++|++. .......+.+...+..+ .-.-|..||.+.. +.
T Consensus 89 ~~ir~~~~~a----------------~~~~~~~~~~iLfIDEI~-~l~~~~q~~LL~~le~~-~v~lI~att~n~~~~l~ 150 (447)
T 3pvs_A 89 KEIREAIERA----------------RQNRNAGRRTILFVDEVH-RFNKSQQDAFLPHIEDG-TITFIGATTENPSFELN 150 (447)
T ss_dssp HHHHHHHHHH----------------HHHHHTTCCEEEEEETTT-CC------CCHHHHHTT-SCEEEEEESSCGGGSSC
T ss_pred HHHHHHHHHH----------------HHhhhcCCCcEEEEeChh-hhCHHHHHHHHHHHhcC-ceEEEecCCCCcccccC
Confidence 1112222111 111124678899999996 43444445555555542 2222333555443 11
Q ss_pred ccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCC---CCccchHHHHHHHHHhcCCchHHHHHH
Q 037574 318 TNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSS---DDREKFEPIGRLVVGKCKGLPFAVKIL 387 (961)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~---~~~~~l~~~~~~I~~~c~G~PLai~~~ 387 (961)
..+. .+...+.+.+++.++...++.+........ ....--.+..+.|++.++|.+-.+..+
T Consensus 151 ~aL~---------sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 151 SALL---------SRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp HHHH---------TTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred HHHh---------CceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 1111 122688999999999999998876431111 111223456777888899988654433
No 167
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.26 E-value=7.9e-06 Score=91.87 Aligned_cols=186 Identities=16% Similarity=0.144 Sum_probs=104.7
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCc--eeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhc
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFD--KRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQ 271 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 271 (961)
...+.|+|++|+||||||+.+++ .....+. .+++++. ..+..++...+.... ...+.+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~------~~~~~~~~~~~~~~~---------~~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDLVDSMKEGK---------LNEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEH------HHHHHHHHHHHHTTC---------HHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeH------HHHHHHHHHHHHccc---------HHHHHHHhc
Confidence 56799999999999999999998 4444442 3445543 234445555543321 112333334
Q ss_pred CCceEEEeecccCCCCh-hhHHHHHHhccC-CCCCcEEEEecCCCcc-----cccccccccccCCCCCcceeecCCCChH
Q 037574 272 GKKVLLVLDDVWWNACP-RYWEQLMYSLKS-GSEGSRILVTRRGEKN-----GTNMTEIGLGEKDGTNMTEIGLGELSAK 344 (961)
Q Consensus 272 ~kr~LlVlDdvw~~~~~-~~~~~l~~~l~~-~~~gs~ilvTtR~~~v-----~~~~~~~~~~~~~~~~~~~~~l~~L~~~ 344 (961)
.+.-+|++||++.-... ..-+.+...+.. ...|..||+||....- ...+... -.....+.+.+++.+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR------~~~g~~i~l~~p~~e 266 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSR------FQMGLVAKLEPPDEE 266 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHH------HHSSBCCBCCCCCHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhh------ccCCeEEEeCCCCHH
Confidence 36789999999621111 233334444332 2346788888875321 1111110 000046889999999
Q ss_pred HHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHHHhh------ccC-CCCHHHHHHHhhh
Q 037574 345 ECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKILGSL------LRF-KTSIEEWQSVLDS 406 (961)
Q Consensus 345 ~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~~~~------l~~-~~~~~~w~~~l~~ 406 (961)
+..+++.+.+......-+ .++...|++.++|.+-.+..+... ... .-+.+.++.++..
T Consensus 267 ~r~~iL~~~~~~~~~~i~----~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~ 331 (440)
T 2z4s_A 267 TRKSIARKMLEIEHGELP----EEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKD 331 (440)
T ss_dssp HHHHHHHHHHHHHTCCCC----TTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTST
T ss_pred HHHHHHHHHHHHcCCCCC----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 999999887642211111 124667888999988544332211 112 2456666666654
No 168
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.25 E-value=4.5e-06 Score=91.66 Aligned_cols=197 Identities=11% Similarity=0.086 Sum_probs=107.7
Q ss_pred CccccchHHHHHHHHHH-hCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCCh---hhhc-cCce-----------
Q 037574 163 LEFHGRNVEKKNILQLL-KGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDS---DVKA-NFDK----------- 226 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~---~~~~-~F~~----------- 226 (961)
.+++|.+...+.+..++ .. +..+.+.|+|+.|+||||+|+.+++.. .... .++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~----------~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~ 83 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQP----------RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKL 83 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCT----------TCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC----------------
T ss_pred HHhcCCHHHHHHHHHHHhhC----------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccc
Confidence 45899999888888777 33 222238999999999999999887621 0000 0000
Q ss_pred ---------eEEEEeCCCC-CHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHH
Q 037574 227 ---------RIWVSASCPR-DEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMY 296 (961)
Q Consensus 227 ---------~~wv~~s~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~ 296 (961)
.+.+..+... ......+++++.+.....- .... .+. .+.+++-++|+|++. .-+......+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~-~ls-~l~~~~~vlilDE~~-~L~~~~~~~L~~ 156 (354)
T 1sxj_E 84 ELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV----DFQD-SKD-GLAHRYKCVIINEAN-SLTKDAQAALRR 156 (354)
T ss_dssp --CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTT-SSCHHHHHHHHH
T ss_pred eeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccc----cccc-ccc-ccCCCCeEEEEeCcc-ccCHHHHHHHHH
Confidence 1111111100 0000122233322111000 0000 000 023467799999997 456666677777
Q ss_pred hccCCCCCcEEEEecCCCc-ccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHH
Q 037574 297 SLKSGSEGSRILVTRRGEK-NGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVG 375 (961)
Q Consensus 297 ~l~~~~~gs~ilvTtR~~~-v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~ 375 (961)
.+.....+..+|++|.... +...+. .+...+.+.+++.++..+.+.+.+...+..-+ -.+....|++
T Consensus 157 ~le~~~~~~~~Il~t~~~~~l~~~l~---------sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~l~~i~~ 224 (354)
T 1sxj_E 157 TMEKYSKNIRLIMVCDSMSPIIAPIK---------SQCLLIRCPAPSDSEISTILSDVVTNERIQLE---TKDILKRIAQ 224 (354)
T ss_dssp HHHHSTTTEEEEEEESCSCSSCHHHH---------TTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC---CSHHHHHHHH
T ss_pred HHHhhcCCCEEEEEeCCHHHHHHHHH---------hhceEEecCCcCHHHHHHHHHHHHHHcCCCCC---cHHHHHHHHH
Confidence 7665455677877776543 222221 12278999999999999999887632221111 0235677889
Q ss_pred hcCCchHHHHHHH
Q 037574 376 KCKGLPFAVKILG 388 (961)
Q Consensus 376 ~c~G~PLai~~~~ 388 (961)
.++|.+-.+..+.
T Consensus 225 ~~~G~~r~a~~~l 237 (354)
T 1sxj_E 225 ASNGNLRVSLLML 237 (354)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HcCCCHHHHHHHH
Confidence 9999987555443
No 169
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.23 E-value=1.3e-05 Score=85.03 Aligned_cols=194 Identities=14% Similarity=0.067 Sum_probs=101.6
Q ss_pred CCccccchHHHHHHHHHHhCCCCCCc---CCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCH
Q 037574 162 PLEFHGRNVEKKNILQLLKGESSDEE---SGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDE 238 (961)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~~~~~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 238 (961)
-.+++|.+..++++.+.+.......+ ..+......+.|+|++|+|||+||+.+++. ....| +.+..+.-.
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~~---~~v~~~~~~-- 88 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNATF---IRVVGSELV-- 88 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCEE---EEEEGGGGC--
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehHHHH--
Confidence 45689999999999887743100000 000023456899999999999999999873 33222 223322110
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCC----------CChhhHHHHHHhcc-----CCCC
Q 037574 239 IRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWN----------ACPRYWEQLMYSLK-----SGSE 303 (961)
Q Consensus 239 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~----------~~~~~~~~l~~~l~-----~~~~ 303 (961)
... .......+...+......++.+|++||+..- .+......+...+. ....
T Consensus 89 ------------~~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 155 (285)
T 3h4m_A 89 ------------KKF-IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARG 155 (285)
T ss_dssp ------------CCS-TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSS
T ss_pred ------------Hhc-cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 000 0111112222233333456789999999410 01111222333222 2234
Q ss_pred CcEEEEecCCCccccc-ccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCC-ch
Q 037574 304 GSRILVTRRGEKNGTN-MTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKG-LP 381 (961)
Q Consensus 304 gs~ilvTtR~~~v~~~-~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G-~P 381 (961)
+..||.||........ .... ..-...+.+.+.+.++..++|+..+..... ..... ...|++.+.| .|
T Consensus 156 ~~~vI~ttn~~~~l~~~l~~~------~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~ 224 (285)
T 3h4m_A 156 DVKIIGATNRPDILDPAILRP------GRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVG 224 (285)
T ss_dssp SEEEEEECSCGGGBCHHHHST------TSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCH
T ss_pred CEEEEEeCCCchhcCHHHcCC------CcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCH
Confidence 5677778865533221 1000 011147899999999999999888643322 11222 3456666766 44
Q ss_pred HHHHH
Q 037574 382 FAVKI 386 (961)
Q Consensus 382 Lai~~ 386 (961)
-.+..
T Consensus 225 ~~i~~ 229 (285)
T 3h4m_A 225 AELKA 229 (285)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 34433
No 170
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.22 E-value=3.5e-05 Score=84.95 Aligned_cols=207 Identities=15% Similarity=0.111 Sum_probs=108.9
Q ss_pred CccccchHHHHH---HHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEe----CCC
Q 037574 163 LEFHGRNVEKKN---ILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSA----SCP 235 (961)
Q Consensus 163 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~----s~~ 235 (961)
..++|++..++. +.+.+.... ...+.+.|+|++|+|||++|+.+.+. ..... ..+.+.. +..
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~--------~~~~~vLl~GppGtGKT~la~~la~~--l~~~~-~~~~~~~~~~~~~~ 112 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK--------IAGRAVLIAGQPGTGKTAIAMGMAQA--LGPDT-PFTAIAGSEIFSLE 112 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC--------CTTCEEEEEESTTSSHHHHHHHHHHH--HCSSC-CEEEEEGGGGSCSS
T ss_pred hhccChHHHHHHHHHHHHHHHcCC--------CCCCEEEEECCCCCCHHHHHHHHHHH--hcccC-Ccccccchhhhhcc
Confidence 469999988766 455555422 22368999999999999999999883 32211 1122221 223
Q ss_pred CCHHHHHHHHHHHhcCC----------------------------CCC--cccHHHHHHHHHHHh-----cCC----ceE
Q 037574 236 RDEIRVAKAILESLKGS----------------------------VSS--QVEMETVLQYINEFV-----QGK----KVL 276 (961)
Q Consensus 236 ~~~~~~~~~il~~l~~~----------------------------~~~--~~~~~~~~~~l~~~l-----~~k----r~L 276 (961)
......+.+.+....+. ... ....+.+...+.+.. .++ +.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~v 192 (368)
T 3uk6_A 113 MSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGV 192 (368)
T ss_dssp SCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCE
T ss_pred cchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCce
Confidence 34444444444331110 000 000112222222211 233 459
Q ss_pred EEeecccCCCChhhHHHHHHhccCCCCCcEEEEecC-CCccccccc---ccccccCCCCCcceeecCCCChHHHHHHHHH
Q 037574 277 LVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRR-GEKNGTNMT---EIGLGEKDGTNMTEIGLGELSAKECRSLFRQ 352 (961)
Q Consensus 277 lVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR-~~~v~~~~~---~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~ 352 (961)
|++|++. ..+.+....+...+...... .++++|. ...+..... ...+...-..+...+.+.+++.++..+++.+
T Consensus 193 l~IDEi~-~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~ 270 (368)
T 3uk6_A 193 LFIDEVH-MLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRI 270 (368)
T ss_dssp EEEESGG-GSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHH
T ss_pred EEEhhcc-ccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHH
Confidence 9999996 44556666777777654444 3444443 211100000 0000000012336689999999999999988
Q ss_pred HHcCCCCCCCccchHHHHHHHHHhcC-CchHHHHH
Q 037574 353 IAFDGRSSDDREKFEPIGRLVVGKCK-GLPFAVKI 386 (961)
Q Consensus 353 ~~~~~~~~~~~~~l~~~~~~I~~~c~-G~PLai~~ 386 (961)
.+...... --.+..+.|++.+. |.|-.+..
T Consensus 271 ~~~~~~~~----~~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 271 RCEEEDVE----MSEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp HHHHTTCC----BCHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHcCCC----CCHHHHHHHHHHhcCCCHHHHHH
Confidence 76432221 22345677888887 77754443
No 171
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.22 E-value=1.8e-06 Score=94.67 Aligned_cols=91 Identities=22% Similarity=0.337 Sum_probs=62.8
Q ss_pred chhhhccCCcccEEEccC-CChhhhhhhcccc-hhhcCCCCcceEeccCCCCcccCC-cchhccCCCcEeecCCCCCCcc
Q 037574 591 LSKVFDQLTCLRTLELSN-HDNVLCKVIKKVP-KQIKRLIHLRYLNLSKNNKIKKLP-KTLCELYNLQTLELSWCSNLRN 667 (961)
Q Consensus 591 ~~~~~~~l~~Lr~L~L~~-~~~~~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~ 667 (961)
+|. +..+.+|++|+|++ | . +..+| ..|+.|.+|++|+|++|. +..+| ..|.+|++|+.|+|++|. +..
T Consensus 24 ip~-l~~~~~L~~L~l~~~n-----~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~ 94 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQ-----H-LQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNA-LES 94 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCS-----S-CCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSC-CSC
T ss_pred cCC-CCCCCCeeEEEccCCC-----C-CCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCc-cce
Confidence 445 77777788888875 5 3 66665 457778888888888777 66554 456778888888887766 777
Q ss_pred cccccccCCCCcEEEeCCccccc
Q 037574 668 LPQGMGKLINLRHVVNVGTPLSY 690 (961)
Q Consensus 668 lP~~i~~L~~L~~L~l~~~~l~~ 690 (961)
+|..+....+|++|++.+|.+..
T Consensus 95 ~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 95 LSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CCSTTTCSCCCCEEECCSSCCCC
T ss_pred eCHHHcccCCceEEEeeCCCccC
Confidence 77665444447788777776654
No 172
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.21 E-value=2.1e-06 Score=93.99 Aligned_cols=90 Identities=23% Similarity=0.235 Sum_probs=46.5
Q ss_pred CCcccccCCCCccEEEecc-CCCccccccchhhhccCCcccEEEccCCChhhhhhhccc-chhhcCCCCcceEeccCCCC
Q 037574 563 AFPNSVYNQKKLRSLGVEH-GGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKV-PKQIKRLIHLRYLNLSKNNK 640 (961)
Q Consensus 563 ~~~~~~~~~~~Lr~L~l~~-~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~ 640 (961)
.+|. +..+++|+.|++++ |. +. .+.+..|..+++|++|+|++| . +..+ |..|++|++|++|+|++|.
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~--l~-~~~~~~~~~l~~L~~L~l~~N-----~-l~~~~~~~~~~l~~L~~L~l~~N~- 91 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQH--LQ-HLELRDLRGLGELRNLTIVKS-----G-LRFVAPDAFHFTPRLSRLNLSFNA- 91 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSS--CC-EECGGGSCSCCCCSEEECCSS-----C-CCEECTTGGGSCSCCCEEECCSSC-
T ss_pred ccCC-CCCCCCeeEEEccCCCC--CC-CcChhHhccccCCCEEECCCC-----c-cceeCHHHhcCCcCCCEEeCCCCc-
Confidence 3454 55555566666654 43 22 233344555666666666665 2 4433 2345556666666666655
Q ss_pred cccCCcchhccCCCcEeecCCCC
Q 037574 641 IKKLPKTLCELYNLQTLELSWCS 663 (961)
Q Consensus 641 i~~lp~~i~~L~~L~~L~l~~~~ 663 (961)
+..+|..+.....|+.|+|.+|.
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSC
T ss_pred cceeCHHHcccCCceEEEeeCCC
Confidence 55555443333336666665554
No 173
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.21 E-value=3e-05 Score=83.98 Aligned_cols=173 Identities=10% Similarity=0.026 Sum_probs=105.4
Q ss_pred chHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhh--------------------ccCcee
Q 037574 168 RNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVK--------------------ANFDKR 227 (961)
Q Consensus 168 r~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~ 227 (961)
.++..+.+...+... .-.+.+.++|+.|+||||+|+.+.+.-.-. .|++ .
T Consensus 7 ~~~~~~~l~~~i~~~---------~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~ 76 (334)
T 1a5t_A 7 LRPDFEKLVASYQAG---------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-Y 76 (334)
T ss_dssp GHHHHHHHHHHHHTT---------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-E
T ss_pred hHHHHHHHHHHHHcC---------CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-E
Confidence 355566777777652 234679999999999999999997631100 0122 2
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh-----cCCceEEEeecccCCCChhhHHHHHHhccCCC
Q 037574 228 IWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFV-----QGKKVLLVLDDVWWNACPRYWEQLMYSLKSGS 302 (961)
Q Consensus 228 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~ 302 (961)
.++.... .......+++.+ +.+.+ .+++-++|+|++. .-+....+.+...+....
T Consensus 77 ~~~~~~~------------------~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead-~l~~~a~naLLk~lEep~ 136 (334)
T 1a5t_A 77 YTLAPEK------------------GKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAA-LLTDAAANALLKTLEEPP 136 (334)
T ss_dssp EEECCCT------------------TCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGG-GBCHHHHHHHHHHHTSCC
T ss_pred EEEeccc------------------cCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchh-hcCHHHHHHHHHHhcCCC
Confidence 2332210 001122222222 22222 3567899999996 445566677777787666
Q ss_pred CCcEEEEecCCCc-ccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCch
Q 037574 303 EGSRILVTRRGEK-NGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLP 381 (961)
Q Consensus 303 ~gs~ilvTtR~~~-v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~P 381 (961)
..+.+|++|.+.. +...+. ++...+.+.++++++..+.+.+.. . . -.+.+..+++.++|.|
T Consensus 137 ~~~~~Il~t~~~~~l~~ti~---------SRc~~~~~~~~~~~~~~~~L~~~~---~--~----~~~~~~~l~~~s~G~~ 198 (334)
T 1a5t_A 137 AETWFFLATREPERLLATLR---------SRCRLHYLAPPPEQYAVTWLSREV---T--M----SQDALLAALRLSAGSP 198 (334)
T ss_dssp TTEEEEEEESCGGGSCHHHH---------TTSEEEECCCCCHHHHHHHHHHHC---C--C----CHHHHHHHHHHTTTCH
T ss_pred CCeEEEEEeCChHhCcHHHh---------hcceeeeCCCCCHHHHHHHHHHhc---C--C----CHHHHHHHHHHcCCCH
Confidence 6777777776543 222221 122789999999999999998874 1 1 1234577899999999
Q ss_pred HHHHHHH
Q 037574 382 FAVKILG 388 (961)
Q Consensus 382 Lai~~~~ 388 (961)
..+..+.
T Consensus 199 r~a~~~l 205 (334)
T 1a5t_A 199 GAALALF 205 (334)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 8665543
No 174
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.12 E-value=2.4e-05 Score=83.90 Aligned_cols=173 Identities=13% Similarity=0.078 Sum_probs=91.0
Q ss_pred ccccchHHHHHHHHHHhCCCCC-----CcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCH
Q 037574 164 EFHGRNVEKKNILQLLKGESSD-----EESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDE 238 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~-----~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 238 (961)
+++|.+..++.+.+++...... .+.........+.|+|++|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 4788888888877665421000 00000034567899999999999999988873222222111223333310
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCC--------CChhhHHHHHHhccCCCCCcEEEEe
Q 037574 239 IRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWN--------ACPRYWEQLMYSLKSGSEGSRILVT 310 (961)
Q Consensus 239 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~--------~~~~~~~~l~~~l~~~~~gs~ilvT 310 (961)
.+..... ......+...+... +..+|++|++..- ........+...+.....+..||.|
T Consensus 109 ---------~l~~~~~-g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ---------DLVGQYI-GHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ---------GTCCSST-TCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ---------Hhhhhcc-cccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 1111110 11111222222222 4569999999511 1344556666666666666778888
Q ss_pred cCCCcccccccccccccCCCCCc-ceeecCCCChHHHHHHHHHHHc
Q 037574 311 RRGEKNGTNMTEIGLGEKDGTNM-TEIGLGELSAKECRSLFRQIAF 355 (961)
Q Consensus 311 tR~~~v~~~~~~~~~~~~~~~~~-~~~~l~~L~~~~~~~Lf~~~~~ 355 (961)
|............+ .-..+. ..+.+++++.++..+++...+.
T Consensus 176 ~~~~~~~~~~~~~~---~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 176 GYADRMENFFQSNP---GFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp ECHHHHHHHHHHST---THHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCH---HHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 75432111000000 000011 6789999999999999988764
No 175
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.10 E-value=3.6e-05 Score=83.16 Aligned_cols=178 Identities=14% Similarity=0.112 Sum_probs=103.6
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVA 242 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 242 (961)
.+++|.+..++.+..++... ....++.+.|++|+|||++|+.+++. .. ...+.++.+.. .. ..+
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~---------~~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~~-~~-~~i 89 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKG---------KIPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSDC-KI-DFV 89 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTT---------CCCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTTC-CH-HHH
T ss_pred HHHhCcHHHHHHHHHHHHcC---------CCCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEccccc-CH-HHH
Confidence 46899999999999999853 23467888899999999999999873 32 12344554432 22 222
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCC-hhhHHHHHHhccCCCCCcEEEEecCCCc-ccccc
Q 037574 243 KAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNAC-PRYWEQLMYSLKSGSEGSRILVTRRGEK-NGTNM 320 (961)
Q Consensus 243 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~-~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~~ 320 (961)
+.++....... ...+++.+||+||+. .-. .+..+.+...+.....+..+|+||.... +...+
T Consensus 90 ~~~~~~~~~~~---------------~~~~~~~vliiDEi~-~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l 153 (324)
T 3u61_B 90 RGPLTNFASAA---------------SFDGRQKVIVIDEFD-RSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPL 153 (324)
T ss_dssp HTHHHHHHHBC---------------CCSSCEEEEEEESCC-CGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTH
T ss_pred HHHHHHHHhhc---------------ccCCCCeEEEEECCc-ccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHH
Confidence 22221110000 012477899999995 333 4455556665554445567888776543 21111
Q ss_pred cccccccCCCCCcceeecCCCChHHHHHH-------HHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHH
Q 037574 321 TEIGLGEKDGTNMTEIGLGELSAKECRSL-------FRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAV 384 (961)
Q Consensus 321 ~~~~~~~~~~~~~~~~~l~~L~~~~~~~L-------f~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai 384 (961)
.. +...+.+++++.++-.++ +.+.+.......+. .+....|++.++|.+-.+
T Consensus 154 ~s---------R~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 154 QS---------RCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD---MKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp HH---------HSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC---HHHHHHHHHHTCSCTTHH
T ss_pred Hh---------hCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHhCCCCHHHH
Confidence 11 126799999998884333 22222111111111 245677888888877543
No 176
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.09 E-value=5e-05 Score=79.69 Aligned_cols=201 Identities=14% Similarity=0.134 Sum_probs=101.5
Q ss_pred ccccchHHHHHHHH-------HHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCC
Q 037574 164 EFHGRNVEKKNILQ-------LLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPR 236 (961)
Q Consensus 164 ~~vGr~~~~~~l~~-------~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~ 236 (961)
.++|....++.+.+ .+..... .....+.|+|++|+|||+||+.+++. ....| +.+..+.
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~-------~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~~---~~i~~~~-- 99 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDR-------TPLVSVLLEGPPHSGKTALAAKIAEE--SNFPF---IKICSPD-- 99 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSS-------CSEEEEEEECSTTSSHHHHHHHHHHH--HTCSE---EEEECGG--
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCC-------CCCeEEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEeCHH--
Confidence 46777766665555 3321111 45678899999999999999999883 32222 2233221
Q ss_pred CHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCC---------CChhhHHHHHHhccC---CCCC
Q 037574 237 DEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWN---------ACPRYWEQLMYSLKS---GSEG 304 (961)
Q Consensus 237 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~---------~~~~~~~~l~~~l~~---~~~g 304 (961)
.+.+. ........+...+......+..+|++||+..- ......+.+...+.. ....
T Consensus 100 -----------~~~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~ 167 (272)
T 1d2n_A 100 -----------KMIGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRK 167 (272)
T ss_dssp -----------GCTTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCE
T ss_pred -----------HhcCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCC
Confidence 01110 01111122233333344567889999998410 011223334444432 2223
Q ss_pred cEEEEecCCCcccccccccccccCCCCCcceeecCCCCh-HHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCC----
Q 037574 305 SRILVTRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSA-KECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKG---- 379 (961)
Q Consensus 305 s~ilvTtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~-~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G---- 379 (961)
..||.||............ ..-...+.+++++. ++...++.+.. . . -.+....|++.+.|
T Consensus 168 ~~ii~ttn~~~~l~~~~l~------~rf~~~i~~p~l~~r~~i~~i~~~~~----~-~----~~~~~~~l~~~~~g~~~~ 232 (272)
T 1d2n_A 168 LLIIGTTSRKDVLQEMEML------NAFSTTIHVPNIATGEQLLEALELLG----N-F----KDKERTTIAQQVKGKKVW 232 (272)
T ss_dssp EEEEEEESCHHHHHHTTCT------TTSSEEEECCCEEEHHHHHHHHHHHT----C-S----CHHHHHHHHHHHTTSEEE
T ss_pred EEEEEecCChhhcchhhhh------cccceEEcCCCccHHHHHHHHHHhcC----C-C----CHHHHHHHHHHhcCCCcc
Confidence 3466677655322211000 01126688999988 67666666531 1 1 12346677888877
Q ss_pred --chHHHHHHHhhccCCCCHHHHHHHhhh
Q 037574 380 --LPFAVKILGSLLRFKTSIEEWQSVLDS 406 (961)
Q Consensus 380 --~PLai~~~~~~l~~~~~~~~w~~~l~~ 406 (961)
..-++..+-.+.. ......+..++..
T Consensus 233 g~ir~l~~~l~~a~~-~~~~~~~~~~~~~ 260 (272)
T 1d2n_A 233 IGIKKLLMLIEMSLQ-MDPEYRVRKFLAL 260 (272)
T ss_dssp ECHHHHHHHHHHHTT-SCGGGHHHHHHHH
T ss_pred ccHHHHHHHHHHHhh-hchHHHHHHHHHH
Confidence 4444444433322 2234455555543
No 177
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.07 E-value=8.6e-05 Score=82.39 Aligned_cols=117 Identities=15% Similarity=0.181 Sum_probs=64.0
Q ss_pred CCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccch-hhcCCCCcceEeccCCCCcccCC-cch
Q 037574 571 QKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPK-QIKRLIHLRYLNLSKNNKIKKLP-KTL 648 (961)
Q Consensus 571 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~i~~lp-~~i 648 (961)
+..+..+.+.+.- . .+....|.++ +|+.+.|..+ +..++. .|.+ .+|+.+.|.. . ++.++ ..+
T Consensus 112 ~~~l~~i~ip~~i---~-~I~~~aF~~~-~L~~i~l~~~-------i~~I~~~aF~~-~~L~~i~lp~-~-l~~I~~~aF 176 (401)
T 4fdw_A 112 LKGYNEIILPNSV---K-SIPKDAFRNS-QIAKVVLNEG-------LKSIGDMAFFN-STVQEIVFPS-T-LEQLKEDIF 176 (401)
T ss_dssp CSSCSEEECCTTC---C-EECTTTTTTC-CCSEEECCTT-------CCEECTTTTTT-CCCCEEECCT-T-CCEECSSTT
T ss_pred cCCccEEEECCcc---C-EehHhhcccC-CccEEEeCCC-------ccEECHHhcCC-CCceEEEeCC-C-ccEehHHHh
Confidence 3455555554432 1 2234445554 5777777655 555543 3444 3577777765 2 55555 456
Q ss_pred hccCCCcEeecCCCCCCcccccccccCCCCcEEEeCCcccccCCcC-CCCCCCCCcC
Q 037574 649 CELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVGTPLSYMPKG-IERWSCLRTL 704 (961)
Q Consensus 649 ~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~l~~~p~~-i~~L~~L~~L 704 (961)
.++.+|+.+++..|. +..+|.......+|+.+.+.. .+..++.. +..+++|+.+
T Consensus 177 ~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l 231 (401)
T 4fdw_A 177 YYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTI 231 (401)
T ss_dssp TTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCE
T ss_pred hCcccCCeeecCCCc-ceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEE
Confidence 677777777776654 666666544456777777643 24444432 3444444443
No 178
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.06 E-value=2.5e-05 Score=90.00 Aligned_cols=202 Identities=15% Similarity=0.149 Sum_probs=109.1
Q ss_pred CccccchHHHHHHHHHHhCCCCC-------CcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCC
Q 037574 163 LEFHGRNVEKKNILQLLKGESSD-------EESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCP 235 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 235 (961)
.+++|++..++.+..++...... .+..+.+..+.+.|+|++|+||||+|+.+++. . .+ .++.++++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~--l--~~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--L--GY-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--T--TC-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH--c--CC-CEEEEeCCCc
Confidence 46999999999999998752100 00000123578999999999999999999883 3 12 2344555544
Q ss_pred CCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH--HhcCCceEEEeecccCC--CChhhHHHHHHhccCCCCCcEEEEec
Q 037574 236 RDEIRVAKAILESLKGSVSSQVEMETVLQYINE--FVQGKKVLLVLDDVWWN--ACPRYWEQLMYSLKSGSEGSRILVTR 311 (961)
Q Consensus 236 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~--~l~~kr~LlVlDdvw~~--~~~~~~~~l~~~l~~~~~gs~ilvTt 311 (961)
.... +....+........ .........+ ...+++.+||+|++..- .+...+..+...+... +..||+++
T Consensus 114 ~~~~-~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~ 186 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNMS----VVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILIC 186 (516)
T ss_dssp CCHH-HHHHTGGGGTTBCC----STTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEE
T ss_pred chHH-HHHHHHHHHhcccc----HHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEE
Confidence 4432 22222222211100 0000000000 12357889999999521 1122345555555432 23455555
Q ss_pred CCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCch-HHHHHH
Q 037574 312 RGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLP-FAVKIL 387 (961)
Q Consensus 312 R~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~P-Lai~~~ 387 (961)
....... +... ......+.+.+++.++..+.+...+.......++ +....|++.++|.+ -++..+
T Consensus 187 ~~~~~~~-l~~l------~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~----~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 187 NERNLPK-MRPF------DRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP----NVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp SCTTSST-TGGG------TTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT----THHHHHHHHTTTCHHHHHHHH
T ss_pred cCCCCcc-chhh------HhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHcCCcHHHHHHHH
Confidence 4332111 1110 1122679999999999999998776432221111 24667888999955 445544
No 179
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.00 E-value=1e-05 Score=75.77 Aligned_cols=113 Identities=17% Similarity=0.169 Sum_probs=69.0
Q ss_pred ccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhh-hccCceeEEEEeCCCCCHHHHH
Q 037574 164 EFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDV-KANFDKRIWVSASCPRDEIRVA 242 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~s~~~~~~~~~ 242 (961)
.++|+...+.++.+.+.... ....-|.|+|.+|+|||++|+.+++.... ... .+ ++++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a--------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~---~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS--------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGE---FV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT--------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSC---CE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHHh--------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCC---EE-EECCCCCcc----
Confidence 47899999999988876433 12234789999999999999999874211 222 23 655543221
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCC
Q 037574 243 KAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRG 313 (961)
Q Consensus 243 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 313 (961)
.... ..+.. .+.-.|++|++. .-..+....+...+.......+||.||..
T Consensus 66 --------------~~~~---~~~~~---a~~g~l~ldei~-~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 --------------PQLN---DFIAL---AQGGTLVLSHPE-HLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp --------------SCHH---HHHHH---HTTSCEEEECGG-GSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred --------------hhhh---cHHHH---cCCcEEEEcChH-HCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 0011 11111 134579999996 44555566677666555556678777764
No 180
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.00 E-value=0.00023 Score=74.09 Aligned_cols=190 Identities=12% Similarity=0.087 Sum_probs=97.5
Q ss_pred CccccchHHHHHHHHHHh---CCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHH
Q 037574 163 LEFHGRNVEKKNILQLLK---GESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEI 239 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~---~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 239 (961)
.+++|.+..++.+.+++. ....-. ..+....+.+.|+|++|+|||++|+.+++ ..... .+.+..+.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~-~~g~~~~~~vll~G~~GtGKT~la~~la~--~~~~~---~~~~~~~~~~~~- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFL-QLGAKVPKGALLLGPPGCGKTLLAKAVAT--EAQVP---FLAMAGAEFVEV- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC-------CCCCCEEEEESCTTSSHHHHHHHHHH--HHTCC---EEEEETTTTSSS-
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHH-HcCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCC---EEEechHHHHhh-
Confidence 468999888877765543 211000 00012345688999999999999999988 33322 234444332110
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCC-----------Ch---hhHHHHHHhccC--CCC
Q 037574 240 RVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNA-----------CP---RYWEQLMYSLKS--GSE 303 (961)
Q Consensus 240 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~-----------~~---~~~~~l~~~l~~--~~~ 303 (961)
........+...+.......+.+|++||+..-. +. .....+...+.. ...
T Consensus 79 --------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 79 --------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp --------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred --------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 001111222233333334567899999995110 01 112233333332 123
Q ss_pred CcEEEEecCCCcccc-cccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchH
Q 037574 304 GSRILVTRRGEKNGT-NMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPF 382 (961)
Q Consensus 304 gs~ilvTtR~~~v~~-~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PL 382 (961)
+..||.||....... .... .+.-...+.+...+.++-.++++..+...... .........|++.+.|.+-
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~------~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~---~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMR------PGRLDRHVFIDLPTLQERREIFEQHLKSLKLT---QSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGS------TTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC---BTHHHHHHHHHHTCTTCCH
T ss_pred CEEEEecCCChhhcCHHHhc------CCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC---cchhhHHHHHHHHCCCCCH
Confidence 456666665443211 1110 00111567899999999999998876432221 1112234678888888753
No 181
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.98 E-value=2.1e-05 Score=77.12 Aligned_cols=45 Identities=29% Similarity=0.374 Sum_probs=38.3
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCC
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
..++||+.+++.+.+.+.. .....+.|+|++|+||||||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~----------~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSR----------RTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTS----------SSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhC----------CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999875 23456789999999999999999873
No 182
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.98 E-value=5.6e-07 Score=99.10 Aligned_cols=137 Identities=13% Similarity=0.082 Sum_probs=70.1
Q ss_pred CCccEEEEEeccCCCCCc----cccc-CCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccch
Q 037574 548 EKFPHLMITFESDQGAFP----NSVY-NQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPK 622 (961)
Q Consensus 548 ~~~r~l~l~~~~~~~~~~----~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~ 622 (961)
+.++.+++..|.+..... ..+. ..++|+.|++++|. +...........+++|+.|+|++|.. .......+..
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~--l~~~~~~~l~~~L~~L~~L~Ls~n~l-~~~~~~~L~~ 148 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ--LDPAGLRTLLPVFLRARKLGLQLNSL-GPEACKDLRD 148 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC--CCHHHHHHTHHHHHTEEEEECCSSCC-CHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC--CCHHHHHHHHHHHHhccHhhcCCCCC-CHHHHHHHHH
Confidence 456666666665532111 1112 22567777777665 22111222333455677777777630 0000112222
Q ss_pred hh-cCCCCcceEeccCCCCccc-----CCcchhccCCCcEeecCCCCCCcc-----cccccccCCCCcEEEeCCcccc
Q 037574 623 QI-KRLIHLRYLNLSKNNKIKK-----LPKTLCELYNLQTLELSWCSNLRN-----LPQGMGKLINLRHVVNVGTPLS 689 (961)
Q Consensus 623 ~i-~~l~~Lr~L~L~~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~l~~-----lP~~i~~L~~L~~L~l~~~~l~ 689 (961)
.+ ....+|++|+|++|. ++. ++..+..+++|++|+|++|. +.. ++..+...++|++|++++|.+.
T Consensus 149 ~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred HHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 22 235567777777776 543 44445566677777777665 432 3444556667777777666554
No 183
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.95 E-value=2.5e-05 Score=76.25 Aligned_cols=122 Identities=16% Similarity=0.187 Sum_probs=66.7
Q ss_pred chHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHH
Q 037574 168 RNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILE 247 (961)
Q Consensus 168 r~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~ 247 (961)
.....+.+.+++..-.. .....+.|+|++|+||||||+.+++.......+ .+++++ ..++...+..
T Consensus 19 ~~~~~~~~~~~~~~~~~-------~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~ 84 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP-------EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKH 84 (180)
T ss_dssp HHHHHHHHHHHHHSCCG-------GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc-------cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHH
Confidence 44555555555554321 234689999999999999999999843212222 233443 4444544444
Q ss_pred HhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHH--HHHHhccCC-CCCcEEEEecCCC
Q 037574 248 SLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWE--QLMYSLKSG-SEGSRILVTRRGE 314 (961)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~--~l~~~l~~~-~~gs~ilvTtR~~ 314 (961)
........ ..... + .+.-+|||||++ ....+.|. .+...+... ..|..||+||...
T Consensus 85 ~~~~~~~~-----~~~~~----~-~~~~llilDE~~-~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 85 LMDEGKDT-----KFLKT----V-LNSPVLVLDDLG-SERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp HHHHTCCS-----HHHHH----H-HTCSEEEEETCS-SSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred HhcCchHH-----HHHHH----h-cCCCEEEEeCCC-CCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 43322111 11111 2 246799999996 22223333 344444322 2467888888633
No 184
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.94 E-value=4.9e-05 Score=82.10 Aligned_cols=159 Identities=16% Similarity=0.105 Sum_probs=86.4
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQG 272 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 272 (961)
....+.|+|++|+||||||+.+++. ....-..++++++ ..+...+...+... ..+ .+.+.+ .
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~------~~~~~~~~~~~~~~-----~~~----~~~~~~-~ 97 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSA------DDFAQAMVEHLKKG-----TIN----EFRNMY-K 97 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEH------HHHHHHHHHHHHHT-----CHH----HHHHHH-H
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEH------HHHHHHHHHHHHcC-----cHH----HHHHHh-c
Confidence 3457899999999999999999984 3221123445543 23344444433211 111 122222 2
Q ss_pred CceEEEeecccCCCCh--hhHHHHHHhccC-CCCCcEEEEecCCCcc-----cccccccccccCCCCCcceeecCCCChH
Q 037574 273 KKVLLVLDDVWWNACP--RYWEQLMYSLKS-GSEGSRILVTRRGEKN-----GTNMTEIGLGEKDGTNMTEIGLGELSAK 344 (961)
Q Consensus 273 kr~LlVlDdvw~~~~~--~~~~~l~~~l~~-~~~gs~ilvTtR~~~v-----~~~~~~~~~~~~~~~~~~~~~l~~L~~~ 344 (961)
+.-+|++||+. .... ...+.+...+.. ...|..||+||....- ...+... -.....+.+++ +.+
T Consensus 98 ~~~vL~iDEi~-~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR------~~~~~~i~l~~-~~~ 169 (324)
T 1l8q_A 98 SVDLLLLDDVQ-FLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSR------FEGGILVEIEL-DNK 169 (324)
T ss_dssp TCSEEEEECGG-GGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHH------HHTSEEEECCC-CHH
T ss_pred CCCEEEEcCcc-cccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhc------ccCceEEEeCC-CHH
Confidence 46799999995 2121 223334444322 1245578887754321 1111100 00005689999 999
Q ss_pred HHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchH
Q 037574 345 ECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPF 382 (961)
Q Consensus 345 ~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PL 382 (961)
+..+++...+......- -.+....|++.+ |..-
T Consensus 170 e~~~il~~~~~~~~~~l----~~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 170 TRFKIIKEKLKEFNLEL----RKEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHHHHHHHHHTTCCC----CHHHHHHHHHHC-SSHH
T ss_pred HHHHHHHHHHHhcCCCC----CHHHHHHHHHhC-CCHH
Confidence 99999988764322211 134566778888 7654
No 185
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.93 E-value=9.6e-05 Score=80.30 Aligned_cols=183 Identities=14% Similarity=0.129 Sum_probs=106.1
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhc-cCc-eeEEEEeCCCCCHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKA-NFD-KRIWVSASCPRDEIR 240 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~F~-~~~wv~~s~~~~~~~ 240 (961)
..++|.+..++.+...+.. ++.+.+.++|+.|+||||+|+.+++. ... .+. .+.-++.+.......
T Consensus 25 ~~~~g~~~~~~~L~~~i~~----------g~~~~~ll~Gp~G~GKTtla~~la~~--l~~~~~~~~~~~~~~~~~~~~~~ 92 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDE----------GKLPHLLFYGPPGTGKTSTIVALARE--IYGKNYSNMVLELNASDDRGIDV 92 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHT----------TCCCCEEEECSSSSSHHHHHHHHHHH--HHTTSHHHHEEEECTTSCCSHHH
T ss_pred HHhcCcHHHHHHHHHHHhc----------CCCceEEEECCCCCCHHHHHHHHHHH--HcCCCccceEEEEcCcccccHHH
Confidence 3578998888888888875 33333899999999999999999873 211 111 122233332222211
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCc-cccc
Q 037574 241 VAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEK-NGTN 319 (961)
Q Consensus 241 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~ 319 (961)
+ ++++..+.... ....+.+-++|+|++. .-.....+.+...+......+.+|++|.... +...
T Consensus 93 i-r~~i~~~~~~~--------------~~~~~~~~viiiDe~~-~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~ 156 (340)
T 1sxj_C 93 V-RNQIKDFASTR--------------QIFSKGFKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPA 156 (340)
T ss_dssp H-HTHHHHHHHBC--------------CSSSCSCEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred H-HHHHHHHHhhc--------------ccCCCCceEEEEeCCC-CCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchh
Confidence 1 11111111000 0012346789999995 3345566667666665555667777765432 1111
Q ss_pred ccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHH
Q 037574 320 MTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKI 386 (961)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~ 386 (961)
+. .+...+.+.+++.++..+.+.+.+-..... --.+..+.|++.++|.+--+..
T Consensus 157 i~---------sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~----i~~~~~~~i~~~s~G~~r~~~~ 210 (340)
T 1sxj_C 157 LL---------SQCTRFRFQPLPQEAIERRIANVLVHEKLK----LSPNAEKALIELSNGDMRRVLN 210 (340)
T ss_dssp HH---------TTSEEEECCCCCHHHHHHHHHHHHHTTTCC----BCHHHHHHHHHHHTTCHHHHHH
T ss_pred HH---------hhceeEeccCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHH
Confidence 11 122678999999999999888766322211 1134567788999998864433
No 186
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.87 E-value=3.9e-06 Score=92.28 Aligned_cols=139 Identities=15% Similarity=0.100 Sum_probs=98.4
Q ss_pred CCCccEEEEEeccCCCCCc-ccccCCCCccEEEeccCCCccccc---cchhhh-ccCCcccEEEccCCChhhhhhhcccc
Q 037574 547 HEKFPHLMITFESDQGAFP-NSVYNQKKLRSLGVEHGGGFMNGI---VLSKVF-DQLTCLRTLELSNHDNVLCKVIKKVP 621 (961)
Q Consensus 547 ~~~~r~l~l~~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~---~~~~~~-~~l~~Lr~L~L~~~~~~~~~~~~~lp 621 (961)
...++.|+++.|.+..... .....+++|+.|++++|. +... .+...+ ...+.|++|+|++|. +.......++
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~--l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~ 176 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS--LGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLM 176 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC--CCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC--CCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHH
Confidence 3578999999887742111 122345689999999986 3211 112223 357899999999994 1111234567
Q ss_pred hhhcCCCCcceEeccCCCCccc-----CCcchhccCCCcEeecCCCCCCc-----ccccccccCCCCcEEEeCCccccc
Q 037574 622 KQIKRLIHLRYLNLSKNNKIKK-----LPKTLCELYNLQTLELSWCSNLR-----NLPQGMGKLINLRHVVNVGTPLSY 690 (961)
Q Consensus 622 ~~i~~l~~Lr~L~L~~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~l~-----~lP~~i~~L~~L~~L~l~~~~l~~ 690 (961)
..+..+++|++|+|++|. +.. ++..+...++|++|+|++|. +. .++..+...++|++|++++|.+..
T Consensus 177 ~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 177 EGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 777889999999999998 664 45667788999999999987 54 344556678999999999987753
No 187
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.86 E-value=0.00036 Score=75.06 Aligned_cols=194 Identities=15% Similarity=0.106 Sum_probs=104.1
Q ss_pred CCccccchHHHHHHHHHHhCCCCCCc--CCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHH
Q 037574 162 PLEFHGRNVEKKNILQLLKGESSDEE--SGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEI 239 (961)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~~~~~~~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 239 (961)
-.+++|.+..++.+.+.+.......+ .......+-+.++|++|+|||+||+.+++ .....| +.++.+
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~--~~~~~~---~~v~~~------ 85 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EANSTF---FSVSSS------ 85 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH--HHTCEE---EEEEHH------
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH--HHCCCE---EEEchH------
Confidence 34689999999999887731000000 00012346799999999999999999988 333332 223321
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHH-HhcCCceEEEeecccCCCC----------hhhHHHHHHhcc---CCCCCc
Q 037574 240 RVAKAILESLKGSVSSQVEMETVLQYINE-FVQGKKVLLVLDDVWWNAC----------PRYWEQLMYSLK---SGSEGS 305 (961)
Q Consensus 240 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~----------~~~~~~l~~~l~---~~~~gs 305 (961)
.+ .... ....+.....+.+ .-..++.+|++|++..-.. ......+...+. ....+.
T Consensus 86 ~l----~~~~------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 155 (322)
T 3eie_A 86 DL----VSKW------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 155 (322)
T ss_dssp HH----HTTT------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCE
T ss_pred HH----hhcc------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCce
Confidence 11 1111 1112222223322 2345678999999951000 111333433333 233455
Q ss_pred EEEEecCCCcccc-cccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCC-chHH
Q 037574 306 RILVTRRGEKNGT-NMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKG-LPFA 383 (961)
Q Consensus 306 ~ilvTtR~~~v~~-~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G-~PLa 383 (961)
.||.||....... .+... -...+.+...+.++-.++|+..+........ ......|++.+.| .+-.
T Consensus 156 ~vi~atn~~~~ld~al~~R--------f~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~l~~la~~t~g~sg~d 223 (322)
T 3eie_A 156 LVLGATNIPWQLDSAIRRR--------FERRIYIPLPDLAARTTMFEINVGDTPCVLT----KEDYRTLGAMTEGYSGSD 223 (322)
T ss_dssp EEEEEESCGGGSCHHHHHH--------CCEEEECCCCCHHHHHHHHHHHHTTCCCCCC----HHHHHHHHHTTTTCCHHH
T ss_pred EEEEecCChhhCCHHHHcc--------cCeEEEeCCCCHHHHHHHHHHHhccCCCCCC----HHHHHHHHHHcCCCCHHH
Confidence 6666776543221 11110 0156788889999999999988743222111 2345678888887 4544
Q ss_pred HHHHH
Q 037574 384 VKILG 388 (961)
Q Consensus 384 i~~~~ 388 (961)
|..+.
T Consensus 224 i~~l~ 228 (322)
T 3eie_A 224 IAVVV 228 (322)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 188
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.85 E-value=2.8e-06 Score=81.08 Aligned_cols=37 Identities=19% Similarity=0.350 Sum_probs=18.5
Q ss_pred CceEEEEeCCCCCCc--CCCCCCCCccceeeeccccCceE
Q 037574 814 KLRSLTLDRCVNLKQ--LPGLGGLPSLESLTLRNMKRIEK 851 (961)
Q Consensus 814 ~L~~L~L~~~~~~~~--l~~l~~lp~L~~L~L~~~~~l~~ 851 (961)
+|++|+|++|. +++ +..+..+++|+.|+|++|..++.
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD 100 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIED 100 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCH
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCH
Confidence 35555555553 221 33344555555555555554443
No 189
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.84 E-value=0.00036 Score=76.16 Aligned_cols=194 Identities=12% Similarity=0.085 Sum_probs=102.8
Q ss_pred CccccchHHHHHHHHHHhCC--CCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGE--SSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIR 240 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~--~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 240 (961)
.+++|.+..++.+.+.+... ....-.......+.|.|+|++|+|||+||+.+++. .... .+.++.+.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~i~~~~l~~--- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGAT---FFSISASSLTS--- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTCE---EEEEEGGGGCC---
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCCe---EEEEehHHhhc---
Confidence 46899999999988876421 00000000034567999999999999999999873 3222 23444432111
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHH-HhcCCceEEEeecccCC-------C---ChhhHHHHHHhccCC----CCCc
Q 037574 241 VAKAILESLKGSVSSQVEMETVLQYINE-FVQGKKVLLVLDDVWWN-------A---CPRYWEQLMYSLKSG----SEGS 305 (961)
Q Consensus 241 ~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~-------~---~~~~~~~l~~~l~~~----~~gs 305 (961)
.. ....+.....+.. .-..++.+|+||++..- . .......+...+... ..+.
T Consensus 156 -----------~~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v 222 (357)
T 3d8b_A 156 -----------KW--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRI 222 (357)
T ss_dssp -----------SS--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCE
T ss_pred -----------cc--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCE
Confidence 00 0011122222222 22356789999999300 0 001223333333321 2344
Q ss_pred EEEEecCCCc-ccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCC-chHH
Q 037574 306 RILVTRRGEK-NGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKG-LPFA 383 (961)
Q Consensus 306 ~ilvTtR~~~-v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G-~PLa 383 (961)
.||.||.... +...+.. .-...+.+...+.++..+++...+...... --.+....|++.+.| .+-.
T Consensus 223 ~vI~atn~~~~l~~~l~~--------Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~----l~~~~l~~la~~t~G~s~~d 290 (357)
T 3d8b_A 223 LVVGATNRPQEIDEAARR--------RLVKRLYIPLPEASARKQIVINLMSKEQCC----LSEEEIEQIVQQSDAFSGAD 290 (357)
T ss_dssp EEEEEESCGGGBCHHHHT--------TCCEEEECCCCCHHHHHHHHHHHHHTSCBC----CCHHHHHHHHHHTTTCCHHH
T ss_pred EEEEecCChhhCCHHHHh--------hCceEEEeCCcCHHHHHHHHHHHHhhcCCC----ccHHHHHHHHHHcCCCCHHH
Confidence 5555665432 2111111 111467888999999999998876432211 113456778888888 5555
Q ss_pred HHHHHh
Q 037574 384 VKILGS 389 (961)
Q Consensus 384 i~~~~~ 389 (961)
+..+..
T Consensus 291 l~~l~~ 296 (357)
T 3d8b_A 291 MTQLCR 296 (357)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 190
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.80 E-value=0.0013 Score=70.40 Aligned_cols=196 Identities=13% Similarity=0.071 Sum_probs=101.4
Q ss_pred CccccchHHHHHHHHHHhCCCCCCc--CCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEE--SGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIR 240 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 240 (961)
.+++|.+..++.+.+.+...-...+ .+.....+.|.|+|++|+|||+||+.+++... ... .+.++.+.-.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~~---~~~i~~~~l~---- 83 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NST---FFSISSSDLV---- 83 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SCE---EEEEECCSSC----
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CCc---EEEEEhHHHH----
Confidence 4689999888888776631100000 00013347899999999999999999998320 111 2223333211
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCC------CChhh----HHHHHHhccC---CCCCcEE
Q 037574 241 VAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWN------ACPRY----WEQLMYSLKS---GSEGSRI 307 (961)
Q Consensus 241 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~------~~~~~----~~~l~~~l~~---~~~gs~i 307 (961)
... .......+...+...-..++.+|++|++..- ..... ...+...+.. ...+..|
T Consensus 84 ----------~~~-~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~v 152 (322)
T 1xwi_A 84 ----------SKW-LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 152 (322)
T ss_dssp ----------CSS-CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEE
T ss_pred ----------hhh-hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEE
Confidence 000 0111112222222223467889999999410 00111 1222223322 2334455
Q ss_pred EEecCCCcccc-cccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCc-hHHHH
Q 037574 308 LVTRRGEKNGT-NMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGL-PFAVK 385 (961)
Q Consensus 308 lvTtR~~~v~~-~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~-PLai~ 385 (961)
|.||....... .+.. .-...+.+...+.++-.++|+.+........ -......|++.+.|. +-.|.
T Consensus 153 I~atn~~~~ld~al~r--------Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l----~~~~l~~la~~t~G~sgadl~ 220 (322)
T 1xwi_A 153 LGATNIPWVLDSAIRR--------RFEKRIYIPLPEPHARAAMFKLHLGTTQNSL----TEADFRELGRKTDGYSGADIS 220 (322)
T ss_dssp EEEESCTTTSCHHHHH--------TCCEEEECCCCCHHHHHHHHHHHHTTCCBCC----CHHHHHHHHHTCTTCCHHHHH
T ss_pred EEecCCcccCCHHHHh--------hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC----CHHHHHHHHHHcCCCCHHHHH
Confidence 65665443221 1111 0015678888899999999988763322111 123467788899887 44455
Q ss_pred HHHh
Q 037574 386 ILGS 389 (961)
Q Consensus 386 ~~~~ 389 (961)
.+..
T Consensus 221 ~l~~ 224 (322)
T 1xwi_A 221 IIVR 224 (322)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 191
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.77 E-value=0.0013 Score=69.81 Aligned_cols=189 Identities=14% Similarity=0.132 Sum_probs=99.5
Q ss_pred CccccchHHHHHHHHHHhCCCCCCc---CCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEE---SGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEI 239 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 239 (961)
.+++|.+..++.+.+++...-...+ .-+....+.+.|+|++|+|||+||+.+++. .... ++.++ ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~-----~i~v~----~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIK----GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCE-----EEEEC----HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCC-----EEEEE----hH
Confidence 4589999988888877652100000 000023467899999999999999999983 3322 23332 22
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCC-------------CChhhHHHHHHhccC--CCCC
Q 037574 240 RVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWN-------------ACPRYWEQLMYSLKS--GSEG 304 (961)
Q Consensus 240 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~-------------~~~~~~~~l~~~l~~--~~~g 304 (961)
.+.. ...+... ..+...+.......+.+|++|++..- ........+...+.. ...+
T Consensus 84 ~l~~----~~~g~~~-----~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 154 (301)
T 3cf0_A 84 ELLT----MWFGESE-----ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 154 (301)
T ss_dssp HHHH----HHHTTCT-----THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSS
T ss_pred HHHh----hhcCchH-----HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 2322 2222111 11222233333456799999999400 001112344444432 2235
Q ss_pred cEEEEecCCCccc-ccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchH
Q 037574 305 SRILVTRRGEKNG-TNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPF 382 (961)
Q Consensus 305 s~ilvTtR~~~v~-~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PL 382 (961)
..||.||...... ..+-.. +.-...+.+...+.++-.++++........ .....+ ..+++.+.|.|-
T Consensus 155 v~vi~atn~~~~ld~al~r~------gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~~----~~la~~~~g~sg 222 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRP------GRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVDL----EFLAKMTNGFSG 222 (301)
T ss_dssp EEEEEEESCGGGSCGGGGST------TSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCCH----HHHHHTCSSCCH
T ss_pred EEEEEecCCccccChHHhcC------CccceEEecCCcCHHHHHHHHHHHHccCCC-CccchH----HHHHHHcCCCCH
Confidence 5677777655322 111110 111157889999999999999877633221 112223 345566777654
No 192
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.73 E-value=0.0011 Score=70.31 Aligned_cols=193 Identities=15% Similarity=0.130 Sum_probs=99.6
Q ss_pred CccccchHHHHHHHHHHhCCCCCCc--CCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEE--SGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIR 240 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 240 (961)
.+++|.+..++.+.+.+.......+ .......+.+.|+|++|+||||+|+.+++. .... .+.++.+....
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~---~~~i~~~~l~~--- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSAT---FLNISAASLTS--- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCE---EEEEESTTTSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEeeHHHHhh---
Confidence 4689999999999887642100000 000023467899999999999999999873 3222 23344332211
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHH-HHHHhcCCceEEEeecccCCC----------ChhhHHHHHHhc---cCC--CCC
Q 037574 241 VAKAILESLKGSVSSQVEMETVLQY-INEFVQGKKVLLVLDDVWWNA----------CPRYWEQLMYSL---KSG--SEG 304 (961)
Q Consensus 241 ~~~~il~~l~~~~~~~~~~~~~~~~-l~~~l~~kr~LlVlDdvw~~~----------~~~~~~~l~~~l---~~~--~~g 304 (961)
.. ..+.+..... +......++.+|++|++..-. .......+...+ +.. +.+
T Consensus 93 -----------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 159 (297)
T 3b9p_A 93 -----------KY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDR 159 (297)
T ss_dssp -----------SS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------C
T ss_pred -----------cc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCc
Confidence 00 0111222222 222234567899999994110 011111222222 211 134
Q ss_pred cEEEEecCCCccc-ccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchH-
Q 037574 305 SRILVTRRGEKNG-TNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPF- 382 (961)
Q Consensus 305 s~ilvTtR~~~v~-~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PL- 382 (961)
..||.||...... ...... -...+.+...+.++...++...+......- -.+....|++.+.|.+-
T Consensus 160 v~vi~~tn~~~~l~~~l~~R--------~~~~i~~~~p~~~~r~~il~~~~~~~~~~~----~~~~~~~la~~~~g~~~~ 227 (297)
T 3b9p_A 160 IVVLAATNRPQELDEAALRR--------FTKRVYVSLPDEQTRELLLNRLLQKQGSPL----DTEALRRLAKITDGYSGS 227 (297)
T ss_dssp EEEEEEESCGGGBCHHHHHH--------CCEEEECCCCCHHHHHHHHHHHHGGGSCCS----CHHHHHHHHHHTTTCCHH
T ss_pred EEEEeecCChhhCCHHHHhh--------CCeEEEeCCcCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHcCCCCHH
Confidence 4566677654321 111100 004577777888888888887653222111 12356778888988775
Q ss_pred HHHHHH
Q 037574 383 AVKILG 388 (961)
Q Consensus 383 ai~~~~ 388 (961)
++..+.
T Consensus 228 ~l~~l~ 233 (297)
T 3b9p_A 228 DLTALA 233 (297)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 193
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.72 E-value=2.6e-05 Score=72.73 Aligned_cols=109 Identities=11% Similarity=0.163 Sum_probs=62.7
Q ss_pred ccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHH
Q 037574 164 EFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAK 243 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 243 (961)
.++|++..++++.+.+.... ....-|.|+|.+|+|||++|+.+++... -|+.+....-....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~--------~~~~~vll~G~~GtGKt~lA~~i~~~~~--------~~~~~~~~~~~~~~-- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA--------KRTSPVFLTGEAGSPFETVARYFHKNGT--------PWVSPARVEYLIDM-- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH--------TCSSCEEEEEETTCCHHHHHGGGCCTTS--------CEECCSSTTHHHHC--
T ss_pred CceeCCHHHHHHHHHHHHHh--------CCCCcEEEECCCCccHHHHHHHHHHhCC--------CeEEechhhCChHh--
Confidence 57899988888888776422 1223477999999999999999988422 22333222111111
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecC
Q 037574 244 AILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRR 312 (961)
Q Consensus 244 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR 312 (961)
...+.+. .+.-.|++|++. ....+....+...+... ..+.+||.||.
T Consensus 67 -------------------~~~~~~~--a~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 67 -------------------PMELLQK--AEGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp -------------------HHHHHHH--TTTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred -------------------hhhHHHh--CCCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 0111111 234578999996 44455555566555543 34567887775
No 194
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.72 E-value=4.1e-05 Score=76.26 Aligned_cols=90 Identities=19% Similarity=0.284 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHh
Q 037574 170 VEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESL 249 (961)
Q Consensus 170 ~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l 249 (961)
..++.+.+++...... .....+.|+|++|+||||||+.+++. .......++|++++ .+...+....
T Consensus 36 ~~~~~~~~~~~~~~~~------~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~------~~~~~~~~~~ 101 (202)
T 2w58_A 36 KAIRFAERFVAEYEPG------KKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP------ELFRELKHSL 101 (202)
T ss_dssp HHHHHHHHHHHHCCSS------CCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH------HHHHHHHHC-
T ss_pred HHHHHHHHHHHHhhhc------cCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH------HHHHHHHHHh
Confidence 3445556666543210 12268999999999999999999984 33334456666643 4444444332
Q ss_pred cCCCCCcccHHHHHHHHHHHhcCCceEEEeeccc
Q 037574 250 KGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVW 283 (961)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw 283 (961)
... ........+ .. .-+|||||++
T Consensus 102 ~~~-----~~~~~~~~~----~~-~~~lilDei~ 125 (202)
T 2w58_A 102 QDQ-----TMNEKLDYI----KK-VPVLMLDDLG 125 (202)
T ss_dssp --C-----CCHHHHHHH----HH-SSEEEEEEEC
T ss_pred ccc-----hHHHHHHHh----cC-CCEEEEcCCC
Confidence 211 112222222 22 2499999996
No 195
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.71 E-value=0.0011 Score=72.09 Aligned_cols=193 Identities=17% Similarity=0.131 Sum_probs=99.6
Q ss_pred CccccchHHHHHHHHHHhCCCCCCc--CCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEE--SGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIR 240 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 240 (961)
.+++|.+..++.+.+.+........ .......+-|.|+|++|+|||+||+.+++. ....| +.++.+ .
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~~---~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCEE---EEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEeeHH------H
Confidence 4689999999998887631100000 000022355889999999999999999983 33222 223221 1
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCCh-----------hhHHHHHHhcc---CCCCCcE
Q 037574 241 VAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACP-----------RYWEQLMYSLK---SGSEGSR 306 (961)
Q Consensus 241 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~-----------~~~~~l~~~l~---~~~~gs~ 306 (961)
+ .....+ .....+...+...-..++.+|++|++. .... .....+...+. ....+..
T Consensus 120 l----~~~~~g-----~~~~~~~~~f~~a~~~~~~vl~iDEid-~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 189 (355)
T 2qp9_X 120 L----VSKWMG-----ESEKLVKQLFAMARENKPSIIFIDQVD-ALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 189 (355)
T ss_dssp H----HSCC--------CHHHHHHHHHHHHHTSSEEEEEECGG-GGTC------CTHHHHHHHHHHHHHHHCC---CCEE
T ss_pred H----hhhhcc-----hHHHHHHHHHHHHHHcCCeEEEEechH-hhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeE
Confidence 1 111100 111112222222234578899999995 1110 01223333332 1234555
Q ss_pred EEEecCCCcccc-cccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCC-chHHH
Q 037574 307 ILVTRRGEKNGT-NMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKG-LPFAV 384 (961)
Q Consensus 307 ilvTtR~~~v~~-~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G-~PLai 384 (961)
||.||....... .+.. .-...+.+...+.++-.++|..+......... ......|++.+.| .+-.|
T Consensus 190 vI~atn~~~~ld~al~r--------Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~----~~~l~~la~~t~G~sg~dl 257 (355)
T 2qp9_X 190 VLGATNIPWQLDSAIRR--------RFERRIYIPLPDLAARTTMFEINVGDTPSVLT----KEDYRTLGAMTEGYSGSDI 257 (355)
T ss_dssp EEEEESCGGGSCHHHHH--------TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC----HHHHHHHHHHTTTCCHHHH
T ss_pred EEeecCCcccCCHHHHc--------ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHcCCCCHHHH
Confidence 666665443211 1111 01156788889999999999887643221111 2345678888888 45445
Q ss_pred HHHH
Q 037574 385 KILG 388 (961)
Q Consensus 385 ~~~~ 388 (961)
..+.
T Consensus 258 ~~l~ 261 (355)
T 2qp9_X 258 AVVV 261 (355)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 196
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.71 E-value=0.0015 Score=72.26 Aligned_cols=194 Identities=14% Similarity=0.142 Sum_probs=99.1
Q ss_pred CCccccchHHHHHHHHHHhCCCCCCc--CCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHH
Q 037574 162 PLEFHGRNVEKKNILQLLKGESSDEE--SGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEI 239 (961)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~~~~~~~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 239 (961)
-.+++|.+..++.+.+++.......+ .......+-|.|+|++|+|||+||+.+++ +.... .+.++.+.-..
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~--~~~~~---~~~v~~~~l~~-- 186 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA--ESNAT---FFNISAASLTS-- 186 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH--HTTCE---EEEECSCCC----
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH--hhcCc---EEEeeHHHhhc--
Confidence 34699999999999887732100000 00002346799999999999999999987 32222 23333332211
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCC----------CChhhHHHHHHhcc---C-CCCCc
Q 037574 240 RVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWN----------ACPRYWEQLMYSLK---S-GSEGS 305 (961)
Q Consensus 240 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~----------~~~~~~~~l~~~l~---~-~~~gs 305 (961)
.. .+ .....+...+...-...+.+|+||++..- ........+...+. . .....
T Consensus 187 ~~--------~g-----~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 253 (389)
T 3vfd_A 187 KY--------VG-----EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRV 253 (389)
T ss_dssp ------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CE
T ss_pred cc--------cc-----hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCE
Confidence 00 00 01111122222222345689999999410 00111122222222 1 12234
Q ss_pred EEEEecCCCcccc-cccccccccCCCCCc-ceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchH-
Q 037574 306 RILVTRRGEKNGT-NMTEIGLGEKDGTNM-TEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPF- 382 (961)
Q Consensus 306 ~ilvTtR~~~v~~-~~~~~~~~~~~~~~~-~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PL- 382 (961)
.||.||....... .+. .++ ..+.+...+.++..+++...+...... -..+....|++.+.|..-
T Consensus 254 ~vI~atn~~~~l~~~l~---------~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~----l~~~~~~~la~~~~g~~~~ 320 (389)
T 3vfd_A 254 LVMGATNRPQELDEAVL---------RRFIKRVYVSLPNEETRLLLLKNLLCKQGSP----LTQKELAQLARMTDGYSGS 320 (389)
T ss_dssp EEEEEESCGGGCCHHHH---------TTCCEEEECCCCCHHHHHHHHHHHHTTSCCC----SCHHHHHHHHHHTTTCCHH
T ss_pred EEEEecCCchhcCHHHH---------cCcceEEEcCCcCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHcCCCCHH
Confidence 5555665433211 111 011 468889999999999998876432221 123356778888888544
Q ss_pred HHHHHH
Q 037574 383 AVKILG 388 (961)
Q Consensus 383 ai~~~~ 388 (961)
++..+.
T Consensus 321 ~l~~L~ 326 (389)
T 3vfd_A 321 DLTALA 326 (389)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 197
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.69 E-value=0.0015 Score=72.48 Aligned_cols=303 Identities=11% Similarity=0.098 Sum_probs=145.9
Q ss_pred ccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccc-hhhcCCCCcceEeccCCCCcccC
Q 037574 566 NSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVP-KQIKRLIHLRYLNLSKNNKIKKL 644 (961)
Q Consensus 566 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~i~~l 644 (961)
..|.+|.+|+++.+..+ .. .+....|.+|.+|+.++|..+ +..++ ..+..+..|+.+.+..+ +..+
T Consensus 65 ~AF~~c~~L~~i~lp~~---i~-~I~~~aF~~c~~L~~i~lp~~-------l~~I~~~aF~~c~~L~~i~~p~~--l~~i 131 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST---VR-EIGEFAFENCSKLEIINIPDS-------VKMIGRCTFSGCYALKSILLPLM--LKSI 131 (394)
T ss_dssp TTTTTCTTEEEEECCTT---CC-EECTTTTTTCTTCCEECCCTT-------CCEECTTTTTTCTTCCCCCCCTT--CCEE
T ss_pred HHhhCCCCceEEEeCCC---cc-CcchhHhhCCCCCcEEEeCCC-------ceEccchhhcccccchhhcccCc--eeee
Confidence 46778888888888643 22 334566888888888888765 55553 34667777777666543 3333
Q ss_pred C-cchhccCCCcEeecCCCCCCcccc-cccccCCCCcEEEeCCcccccCCcC-CCCCCCCCcCCceEecCCCCCCCCCCh
Q 037574 645 P-KTLCELYNLQTLELSWCSNLRNLP-QGMGKLINLRHVVNVGTPLSYMPKG-IERWSCLRTLSEFIVSGGNDDKKASKL 721 (961)
Q Consensus 645 p-~~i~~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~l 721 (961)
+ ..+..+..+....... +..+. ..+..+.+|+.+.+..+ +..++.+ +..+.+|+.+.. ..+-.......+
T Consensus 132 ~~~aF~~~~~~~~~~~~~---~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l---~~~~~~I~~~~F 204 (394)
T 4fs7_A 132 GVEAFKGCDFKEITIPEG---VTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKL---PRNLKIIRDYCF 204 (394)
T ss_dssp CTTTTTTCCCSEEECCTT---CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCC---CTTCCEECTTTT
T ss_pred cceeeecccccccccCcc---ccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEc---CCCceEeCchhh
Confidence 3 3344444333333222 22333 34566777777777432 2333332 444555555432 111000001122
Q ss_pred hhhhcccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHHHHhcCCCCCCcCceEEeeecC
Q 037574 722 ECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAVVEGLELPSNLESMEMFYYRG 801 (961)
Q Consensus 722 ~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~ 801 (961)
..+..|..+. +. .... ...........|+.+.+...... . --.....+.+|+.+.+....
T Consensus 205 ~~~~~L~~i~----~~--~~~~---~i~~~~~~~~~l~~i~ip~~~~~--------i--~~~~f~~~~~l~~~~~~~~~- 264 (394)
T 4fs7_A 205 AECILLENME----FP--NSLY---YLGDFALSKTGVKNIIIPDSFTE--------L--GKSVFYGCTDLESISIQNNK- 264 (394)
T ss_dssp TTCTTCCBCC----CC--TTCC---EECTTTTTTCCCCEEEECTTCCE--------E--CSSTTTTCSSCCEEEECCTT-
T ss_pred ccccccceee----cC--CCce---EeehhhcccCCCceEEECCCcee--------c--ccccccccccceeEEcCCCc-
Confidence 2333333221 00 0000 00001112245555554321100 0 00011223456666554332
Q ss_pred ccccccccccccCceEEEEeCCCCCCcCC--CCCCCCccceeeeccccCceEeCccccccCCCCCCCcccccCcccceee
Q 037574 802 ESISLMMIMLSNKLRSLTLDRCVNLKQLP--GLGGLPSLESLTLRNMKRIEKVGNEFLLTDRTSSTGTAVSAFPKLKSLV 879 (961)
Q Consensus 802 ~~~~~~~~~~l~~L~~L~L~~~~~~~~l~--~l~~lp~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~fp~L~~L~ 879 (961)
..+.......+.+|+.+.+... .++ .+..+.+|+.+.+.+ +++.++...+ ..+.+|+.+.
T Consensus 265 ~~i~~~~F~~~~~l~~~~~~~~----~i~~~~F~~~~~L~~i~l~~--~i~~I~~~aF------------~~c~~L~~i~ 326 (394)
T 4fs7_A 265 LRIGGSLFYNCSGLKKVIYGSV----IVPEKTFYGCSSLTEVKLLD--SVKFIGEEAF------------ESCTSLVSID 326 (394)
T ss_dssp CEECSCTTTTCTTCCEEEECSS----EECTTTTTTCTTCCEEEECT--TCCEECTTTT------------TTCTTCCEEC
T ss_pred ceeeccccccccccceeccCce----eecccccccccccccccccc--ccceechhhh------------cCCCCCCEEE
Confidence 1121122224556666655432 122 355677788777753 4677665533 3456677776
Q ss_pred ccccccccccccccccCcccccccccceecccccccCcCCCCCCC--CCCCCeEEEcc
Q 037574 880 FLKMKAWREWKYKTKRGKHYKIMPCLCSLTIGYCNELEMLPAEHF--PDTLKDLKIIS 935 (961)
Q Consensus 880 l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~l--~~sL~~L~i~~ 935 (961)
+-+ +++.+.. .....+.+|+.+.+.. .++.++...+ +.+|+.+.+..
T Consensus 327 lp~--~v~~I~~-----~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 327 LPY--LVEEIGK-----RSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CCT--TCCEECT-----TTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred eCC--cccEEhH-----HhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 632 2333221 1223567788887754 3777766555 45588888743
No 198
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.68 E-value=0.00021 Score=75.62 Aligned_cols=149 Identities=11% Similarity=0.040 Sum_probs=92.1
Q ss_pred chHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChh-hhccCceeEEEEeCC-CCCHHHHHHHH
Q 037574 168 RNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSD-VKANFDKRIWVSASC-PRDEIRVAKAI 245 (961)
Q Consensus 168 r~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~s~-~~~~~~~~~~i 245 (961)
-++.++.+...+.. ++.+...++|++|+||||+|+.+.+... .........++..+. ...+. ..+++
T Consensus 2 ~~~~~~~L~~~i~~----------~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id-~ir~l 70 (305)
T 2gno_A 2 AKDQLETLKRIIEK----------SEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGID-DIRTI 70 (305)
T ss_dssp --CHHHHHHHHHHT----------CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHH-HHHHH
T ss_pred hHHHHHHHHHHHHC----------CCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHH-HHHHH
Confidence 34555666666664 3367899999999999999999976311 111122334454432 22222 22334
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCccccccccccc
Q 037574 246 LESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNGTNMTEIGL 325 (961)
Q Consensus 246 l~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~ 325 (961)
.+.+.... ..+++-++|+|++. .-.....+.+...+......+.+|++|.++. ....+.
T Consensus 71 i~~~~~~p----------------~~~~~kvviIdead-~lt~~a~naLLk~LEep~~~t~fIl~t~~~~--kl~~tI-- 129 (305)
T 2gno_A 71 KDFLNYSP----------------ELYTRKYVIVHDCE-RMTQQAANAFLKALEEPPEYAVIVLNTRRWH--YLLPTI-- 129 (305)
T ss_dssp HHHHTSCC----------------SSSSSEEEEETTGG-GBCHHHHHHTHHHHHSCCTTEEEEEEESCGG--GSCHHH--
T ss_pred HHHHhhcc----------------ccCCceEEEeccHH-HhCHHHHHHHHHHHhCCCCCeEEEEEECChH--hChHHH--
Confidence 44432221 13567799999996 4556677778888877667778877775442 122221
Q ss_pred ccCCCCCcceeecCCCChHHHHHHHHHHH
Q 037574 326 GEKDGTNMTEIGLGELSAKECRSLFRQIA 354 (961)
Q Consensus 326 ~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 354 (961)
..+ .+++.++++++..+.+.+..
T Consensus 130 ----~SR--~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 130 ----KSR--VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ----HTT--SEEEECCCCHHHHHHHHHHH
T ss_pred ----Hce--eEeCCCCCHHHHHHHHHHHh
Confidence 122 78999999999999998875
No 199
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.65 E-value=0.0025 Score=68.76 Aligned_cols=179 Identities=17% Similarity=0.187 Sum_probs=94.6
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVA 242 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 242 (961)
..++|.+..++.+...+....... .....+.|+|++|+||||||+.+++ .....|. ..+.+-.....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~-----~~~~~~ll~Gp~G~GKTTLa~~ia~--~l~~~~~---~~sg~~~~~~~--- 91 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRG-----EVLDHVLLAGPPGLGKTTLAHIIAS--ELQTNIH---VTSGPVLVKQG--- 91 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHT-----CCCCCEEEESSTTSSHHHHHHHHHH--HHTCCEE---EEETTTCCSHH---
T ss_pred HHccCcHHHHHHHHHHHHHHHhcC-----CCCCeEEEECCCCCcHHHHHHHHHH--HhCCCEE---EEechHhcCHH---
Confidence 357888877777766654320000 2346789999999999999999998 3322221 11111111111
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCC--------C----------C
Q 037574 243 KAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGS--------E----------G 304 (961)
Q Consensus 243 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~--------~----------g 304 (961)
++...+ ..+ .++-++++|++. .......+.+...+.... . .
T Consensus 92 ------------------~l~~~~-~~~-~~~~v~~iDE~~-~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~ 150 (334)
T 1in4_A 92 ------------------DMAAIL-TSL-ERGDVLFIDEIH-RLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQP 150 (334)
T ss_dssp ------------------HHHHHH-HHC-CTTCEEEEETGG-GCCHHHHHHHHHHHHTSCCCC---------------CC
T ss_pred ------------------HHHHHH-HHc-cCCCEEEEcchh-hcCHHHHHHHHHHHHhcccceeeccCcccccccccCCC
Confidence 111111 112 245578889885 333334444443332211 0 0
Q ss_pred cEEE-EecCCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHH
Q 037574 305 SRIL-VTRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFA 383 (961)
Q Consensus 305 s~il-vTtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLa 383 (961)
..++ .|++...+...... .-.....+++.+.++-.+++.+.+-.... ..-.+.+..|++.++|.|-.
T Consensus 151 ~~li~at~~~~~Ls~~l~s--------R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~----~~~~~~~~~ia~~~~G~~R~ 218 (334)
T 1in4_A 151 FTLVGATTRSGLLSSPLRS--------RFGIILELDFYTVKELKEIIKRAASLMDV----EIEDAAAEMIAKRSRGTPRI 218 (334)
T ss_dssp CEEEEEESCGGGSCHHHHT--------TCSEEEECCCCCHHHHHHHHHHHHHHTTC----CBCHHHHHHHHHTSTTCHHH
T ss_pred eEEEEecCCcccCCHHHHH--------hcCceeeCCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHhcCCChHH
Confidence 1122 23332222111111 10135789999999999999887632211 22245688899999999965
Q ss_pred HHHH
Q 037574 384 VKIL 387 (961)
Q Consensus 384 i~~~ 387 (961)
+..+
T Consensus 219 a~~l 222 (334)
T 1in4_A 219 AIRL 222 (334)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 200
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.63 E-value=0.0023 Score=71.79 Aligned_cols=194 Identities=14% Similarity=0.107 Sum_probs=100.5
Q ss_pred CCccccchHHHHHHHHHHhCC----CCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCC
Q 037574 162 PLEFHGRNVEKKNILQLLKGE----SSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRD 237 (961)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~~----~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 237 (961)
-.+++|.+..++.+.+.+... .--. ......+.|.|+|++|+|||+||+.+++. . ....++.++...
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~--~~~~~~~~vLL~GppGtGKT~lA~aia~~--~----~~~~~~~v~~~~- 203 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFT--GKRTPWRGILLFGPPGTGKSYLAKAVATE--A----NNSTFFSISSSD- 203 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTS--GGGCCCSEEEEECSTTSSHHHHHHHHHHH--C----CSSEEEEECCC--
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhh--ccCCCCceEEEECCCCCCHHHHHHHHHHH--c----CCCCEEEEeHHH-
Confidence 346899999999888876311 0000 00023478999999999999999999983 2 122334443321
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCC------Chh----hHHHHHHhccC---CCCC
Q 037574 238 EIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNA------CPR----YWEQLMYSLKS---GSEG 304 (961)
Q Consensus 238 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~------~~~----~~~~l~~~l~~---~~~g 304 (961)
+. ....+.. ......+ +...-..++.+|++|++..-. ... ....+...+.. ...+
T Consensus 204 ---l~----~~~~g~~--~~~~~~~---f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 271 (444)
T 2zan_A 204 ---LV----SKWLGES--EKLVKNL---FQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 271 (444)
T ss_dssp ---------------C--CCTHHHH---HHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSS
T ss_pred ---HH----hhhcchH--HHHHHHH---HHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCC
Confidence 11 1111111 1111222 222224577899999995110 001 12223333322 1345
Q ss_pred cEEEEecCCCccccc-ccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCc-hH
Q 037574 305 SRILVTRRGEKNGTN-MTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGL-PF 382 (961)
Q Consensus 305 s~ilvTtR~~~v~~~-~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~-PL 382 (961)
..||.||........ +.. .-...+.+...+.++...+|..+........ -......|++.+.|. +-
T Consensus 272 v~vI~atn~~~~ld~al~r--------Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l----~~~~l~~la~~t~G~sga 339 (444)
T 2zan_A 272 ILVLGATNIPWVLDSAIRR--------RFEKRIYIPLPEAHARAAMFRLHLGSTQNSL----TEADFQELGRKTDGYSGA 339 (444)
T ss_dssp CEEEEEESCGGGSCHHHHT--------TCCEEEECCCCCHHHHHHHHHHHHTTSCEEC----CHHHHHHHHHHTTTCCHH
T ss_pred EEEEecCCCccccCHHHHh--------hcceEEEeCCcCHHHHHHHHHHHHhcCCCCC----CHHHHHHHHHHcCCCCHH
Confidence 566667755432211 100 1114677888888999999988763322111 123456788888884 44
Q ss_pred HHHHHH
Q 037574 383 AVKILG 388 (961)
Q Consensus 383 ai~~~~ 388 (961)
.|..+.
T Consensus 340 dl~~l~ 345 (444)
T 2zan_A 340 DISIIV 345 (444)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 201
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.58 E-value=0.00061 Score=77.07 Aligned_cols=194 Identities=14% Similarity=0.164 Sum_probs=101.7
Q ss_pred CccccchHHHHHHHHHHhCCCCCCc---CCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEE---SGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEI 239 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 239 (961)
.+++|.+..++++.+++.......+ .-+.....-|.|+|++|+|||++|+.+++ .....| +.++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~--~~~~~f---v~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH--HCSSEE---EEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH--HhCCCE---EEEEch------
Confidence 3589999999999887753200000 00002345689999999999999999987 332222 233321
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccC-------CCC---hhhHHHHHHhccC--CCCCcEE
Q 037574 240 RVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWW-------NAC---PRYWEQLMYSLKS--GSEGSRI 307 (961)
Q Consensus 240 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~-------~~~---~~~~~~l~~~l~~--~~~gs~i 307 (961)
. +...+. ......+...+.....+++.+|+||++.. ... ......+...+.. ...+..|
T Consensus 273 ~----l~~~~~-----g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 273 E----IMSKLA-----GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp H----HHTSCT-----THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred H----hhhhhc-----chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 1 111110 11122233344444456788999999920 001 0122334444432 2234455
Q ss_pred EEecCCCc-ccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCc-hHHHH
Q 037574 308 LVTRRGEK-NGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGL-PFAVK 385 (961)
Q Consensus 308 lvTtR~~~-v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~-PLai~ 385 (961)
|.||.... +...+... +.-...+.+...+.++-.++|+.++..... .....+ .++++.+.|. +-.+.
T Consensus 344 IaaTn~~~~Ld~al~r~------gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~l----~~la~~t~g~s~~dL~ 412 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRF------GRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVDL----EQVANETHGHVGADLA 412 (489)
T ss_dssp EEEESCGGGBCGGGGST------TSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCCH----HHHHHTCTTCCHHHHH
T ss_pred EEecCCccccCHHHhCC------CcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhhH----HHHHHHccCCcHHHHH
Confidence 66665543 22222110 111146889999999999999887632221 122223 4466667664 44444
Q ss_pred HH
Q 037574 386 IL 387 (961)
Q Consensus 386 ~~ 387 (961)
.+
T Consensus 413 ~L 414 (489)
T 3hu3_A 413 AL 414 (489)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 202
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.57 E-value=0.00023 Score=80.66 Aligned_cols=152 Identities=17% Similarity=0.221 Sum_probs=79.7
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccC------ce-eEEEEeCCC
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANF------DK-RIWVSASCP 235 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~-~~wv~~s~~ 235 (961)
..++||+.+++++.+.|... ...-+.|+|++|+|||++|+.+++ .+...+ +. .+.++++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~----------~~~~~LL~G~pG~GKT~la~~la~--~l~~~~~p~~l~~~~~~~l~~~-- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRR----------TKNNPVLIGEPGVGKTAIAEGLAQ--QIINNEVPEILRDKRVMTLDMG-- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCS----------SSCEEEEESCTTTTTHHHHHHHHH--HHHSSCSCTTTSSCCEECC-----
T ss_pred CCccCcHHHHHHHHHHHhcc----------CCCCeEEECCCCCCHHHHHHHHHH--HHHhCCCChhhcCCeEEEeeCC--
Confidence 35999999999999999762 234567999999999999999987 332211 11 1122222
Q ss_pred CCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCc
Q 037574 236 RDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEK 315 (961)
Q Consensus 236 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 315 (961)
....+.. ... +...+...-..++.+|++| . ..+....+...+.. ...++|.+|....
T Consensus 246 -----------~~~~g~~--e~~---~~~~~~~~~~~~~~iLfiD-~----~~~a~~~L~~~L~~--g~v~vI~at~~~e 302 (468)
T 3pxg_A 246 -----------TKYRGEF--EDR---LKKVMDEIRQAGNIILFID-A----AIDASNILKPSLAR--GELQCIGATTLDE 302 (468)
T ss_dssp --------------------CTT---HHHHHHHHHTCCCCEEEEC-C------------CCCTTS--SSCEEEEECCTTT
T ss_pred -----------ccccchH--HHH---HHHHHHHHHhcCCeEEEEe-C----chhHHHHHHHhhcC--CCEEEEecCCHHH
Confidence 0000000 011 1222222233567899999 2 11222223333322 2345666555443
Q ss_pred ccccccccccccCCCCCcceeecCCCChHHHHHHHHHHH
Q 037574 316 NGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIA 354 (961)
Q Consensus 316 v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 354 (961)
........ ..-..++..+.+.+.+.++..+++....
T Consensus 303 ~~~~~~~~---~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 303 YRKYIEKD---AALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp THHHHTTC---SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHhhcC---HHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 11100000 0001123679999999999999998764
No 203
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.57 E-value=5.8e-05 Score=73.87 Aligned_cols=117 Identities=16% Similarity=0.087 Sum_probs=71.3
Q ss_pred cccCCCCccEEEeccC-CCcccc---ccchhhhccCCcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCcc
Q 037574 567 SVYNQKKLRSLGVEHG-GGFMNG---IVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIK 642 (961)
Q Consensus 567 ~~~~~~~Lr~L~l~~~-~~~~~~---~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~ 642 (961)
.+...+.|++|++++| . +.. ..+...+...+.|++|+|++|. +.......+...+...++|++|+|++|. +.
T Consensus 31 ~l~~~~~L~~L~L~~n~~--i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~ 106 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMN--IPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF-IS 106 (185)
T ss_dssp HHTTCTTCCEEECTTCTT--CCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC-CC
T ss_pred HHhcCCCCCEEEecCCCC--CCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc-CC
Confidence 4556677777777776 4 210 1133445667778888888774 1111123345556666778888888877 55
Q ss_pred c-----CCcchhccCCCcEeec--CCCCCCcc-----cccccccCCCCcEEEeCCccc
Q 037574 643 K-----LPKTLCELYNLQTLEL--SWCSNLRN-----LPQGMGKLINLRHVVNVGTPL 688 (961)
Q Consensus 643 ~-----lp~~i~~L~~L~~L~l--~~~~~l~~-----lP~~i~~L~~L~~L~l~~~~l 688 (961)
. +...+....+|++|++ ++|. +.. +...+...++|++|+++.|.+
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 4 4556666777888888 5555 432 334455567788888766654
No 204
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.55 E-value=5.4e-05 Score=72.17 Aligned_cols=90 Identities=12% Similarity=0.192 Sum_probs=54.0
Q ss_pred CCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccchhhcCC----CCcceEeccCCCCcccCC-
Q 037574 571 QKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRL----IHLRYLNLSKNNKIKKLP- 645 (961)
Q Consensus 571 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l----~~Lr~L~L~~~~~i~~lp- 645 (961)
..+|+.|+++++. +....+. .+..+++|+.|+|++|..+....+ ..++.+ ++|++|+|++|..++.--
T Consensus 60 ~~~L~~LDLs~~~--Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL----~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 60 KYKIQAIDATDSC--IMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCL----ERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp CCCEEEEEEESCC--CCGGGGG-GGTTCSCCCEEEEESCTTCCHHHH----HHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CceEeEEeCcCCC--ccHHHHH-HhcCCCCCCEEEeCCCCccCHHHH----HHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 3467777777765 2212222 246778888888888753322222 223433 368888888876565421
Q ss_pred cchhccCCCcEeecCCCCCCcc
Q 037574 646 KTLCELYNLQTLELSWCSNLRN 667 (961)
Q Consensus 646 ~~i~~L~~L~~L~l~~~~~l~~ 667 (961)
..+.++++|++|++++|..++.
T Consensus 133 ~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHhcCCCCCEEECCCCCCCCc
Confidence 3456778888888888876654
No 205
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.54 E-value=0.00042 Score=84.99 Aligned_cols=158 Identities=18% Similarity=0.243 Sum_probs=81.3
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhcc-----C-c-eeEEEEeCCC
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKAN-----F-D-KRIWVSASCP 235 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----F-~-~~~wv~~s~~ 235 (961)
..++||+.++.++.+.|... ...-+.++|.+|+||||||+.+++. +... . + .+++++++.-
T Consensus 170 d~viGr~~~i~~l~~~l~~~----------~~~~vlL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~~l 237 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRR----------TKNNPVLIGEPGVGKTAIVEGLAQR--IVKGDVPEGLKGKRIVSLQMGSL 237 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCS----------SCCCCEEEECTTSCHHHHHHHHHHH--HHHTCSCTTSTTCEEEEECC---
T ss_pred cccCCcHHHHHHHHHHHhcC----------CCCceEEEcCCCCCHHHHHHHHHHH--HhcCCCchhhcCCeEEEeehHHh
Confidence 45899999999999999763 2334689999999999999999883 3211 1 1 2333333211
Q ss_pred CCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh-c-CCceEEEeecccCCCC--------hhhHHHHHHhccCCCCCc
Q 037574 236 RDEIRVAKAILESLKGSVSSQVEMETVLQYINEFV-Q-GKKVLLVLDDVWWNAC--------PRYWEQLMYSLKSGSEGS 305 (961)
Q Consensus 236 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~-~kr~LlVlDdvw~~~~--------~~~~~~l~~~l~~~~~gs 305 (961)
.. +.. ...+.+.....+.+.+ . +++.+|++|++. .-. .+....+...+..+ +.
T Consensus 238 ~~-------------g~~-~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~-~l~~~~~~~g~~~~~~~L~~~l~~~--~i 300 (854)
T 1qvr_A 238 LA-------------GAK-YRGEFEERLKAVIQEVVQSQGEVILFIDELH-TVVGAGKAEGAVDAGNMLKPALARG--EL 300 (854)
T ss_dssp ----------------------CHHHHHHHHHHHHHTTCSSEEEEECCC--------------------HHHHHTT--CC
T ss_pred hc-------------cCc-cchHHHHHHHHHHHHHHhcCCCeEEEEecHH-HHhccCCccchHHHHHHHHHHHhCC--Ce
Confidence 10 000 0112222222222223 2 367899999995 111 11112244444332 33
Q ss_pred EEEEecCCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHH
Q 037574 306 RILVTRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQI 353 (961)
Q Consensus 306 ~ilvTtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 353 (961)
.+|.+|....... ... ...-..++..+.+++++.++..+++...
T Consensus 301 ~~I~at~~~~~~~-~~~---d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 301 RLIGATTLDEYRE-IEK---DPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp CEEEEECHHHHHH-HTT---CTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred EEEEecCchHHhh-hcc---CHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 4555554322110 000 0011123366899999999999999754
No 206
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.50 E-value=0.00034 Score=74.91 Aligned_cols=127 Identities=15% Similarity=0.229 Sum_probs=67.0
Q ss_pred ccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHH
Q 037574 164 EFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAK 243 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 243 (961)
.++|.+..++.+...+......- .........+.++|++|+|||++|+.+++. ....-...+.+.++...... ...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~-~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~-~~~ 93 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGL-KDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-AVS 93 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTC-SCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTT-HHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCC-CCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeecccccccc-cHH
Confidence 47899988888877776421000 000022357999999999999999999883 32222234555554332211 111
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHh-cCCceEEEeecccCCCChhhHHHHHHhccC
Q 037574 244 AILESLKGSVSSQVEMETVLQYINEFV-QGKKVLLVLDDVWWNACPRYWEQLMYSLKS 300 (961)
Q Consensus 244 ~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~ 300 (961)
.+ ++... .....+. ...+...+ ....-+|+||++. ..+......+...+..
T Consensus 94 ~l---~g~~~-~~~~~~~-~~~~~~~~~~~~~~vl~lDEi~-~l~~~~~~~Ll~~le~ 145 (311)
T 4fcw_A 94 RL---IGAPP-GYVGYEE-GGQLTEAVRRRPYSVILFDAIE-KAHPDVFNILLQMLDD 145 (311)
T ss_dssp HH---HCCCT-TSTTTTT-CCHHHHHHHHCSSEEEEEETGG-GSCHHHHHHHHHHHHH
T ss_pred Hh---cCCCC-ccccccc-cchHHHHHHhCCCeEEEEeChh-hcCHHHHHHHHHHHhc
Confidence 11 11111 0000000 01122222 2344699999996 4556666667666643
No 207
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.49 E-value=0.00014 Score=75.81 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=33.8
Q ss_pred ccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCC
Q 037574 164 EFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
.++|.+..+.++.+.+.... .....|.|+|.+|+|||++|+.+++.
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~--------~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLA--------PLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHT--------TSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred cceeCCHHHHHHHHHHHHHh--------CCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 47899998888887665432 12245779999999999999999874
No 208
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.48 E-value=0.0002 Score=77.87 Aligned_cols=135 Identities=18% Similarity=0.184 Sum_probs=73.8
Q ss_pred CCCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhh-hccCCcccEEEccCCChhh--hhhhcccchh
Q 037574 547 HEKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKV-FDQLTCLRTLELSNHDNVL--CKVIKKVPKQ 623 (961)
Q Consensus 547 ~~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~-~~~l~~Lr~L~L~~~~~~~--~~~~~~lp~~ 623 (961)
.+.++.|.+.++.. ..++. + .+++|++|.+..+. +....+... ...+++|+.|+|+.+.+.. +..+..+...
T Consensus 171 ~P~L~~L~L~g~~~-l~l~~-~-~~~~L~~L~L~~~~--l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 171 MPLLNNLKIKGTNN-LSIGK-K-PRPNLKSLEIISGG--LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp CTTCCEEEEECCBT-CBCCS-C-BCTTCSEEEEECSB--CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred CCCCcEEEEeCCCC-ceecc-c-cCCCCcEEEEecCC--CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 46788888877632 12232 2 37788888887654 221111111 1367888888875321100 0001112122
Q ss_pred h--cCCCCcceEeccCCCCccc-CCcch---hccCCCcEeecCCCCCCcc-----cccccccCCCCcEEEeCCccc
Q 037574 624 I--KRLIHLRYLNLSKNNKIKK-LPKTL---CELYNLQTLELSWCSNLRN-----LPQGMGKLINLRHVVNVGTPL 688 (961)
Q Consensus 624 i--~~l~~Lr~L~L~~~~~i~~-lp~~i---~~L~~L~~L~l~~~~~l~~-----lP~~i~~L~~L~~L~l~~~~l 688 (961)
+ ..+++|++|+|++|. +.. .+..+ ..+++|++|+|+.|. +.. ++..+..+++|++|+++.|.+
T Consensus 246 l~~~~~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp SCTTTCTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HhcCCCCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 2 346788888887776 432 22222 246778888887765 443 445556677788888766654
No 209
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.47 E-value=0.0002 Score=76.13 Aligned_cols=46 Identities=22% Similarity=0.357 Sum_probs=36.6
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhC
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
..++|+...+.++.+.+.... .....|.|+|.+|+|||++|+.+.+
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a--------~~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA--------PSDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC--------STTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh--------CCCCcEEEECCCCchHHHHHHHHHH
Confidence 358899999999888776543 2234577999999999999999987
No 210
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.0033 Score=69.32 Aligned_cols=187 Identities=14% Similarity=0.153 Sum_probs=98.4
Q ss_pred CccccchHHHHHHHHHHhCCCCCCc---CCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEE---SGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEI 239 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 239 (961)
.++.|-++.+++|.+.+.-+-...+ ..+....+-|.++|++|.|||+||+.+++ .....| +.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~--e~~~~~---~~v~~s~l~s-- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA--TIGANF---IFSPASGIVD-- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGTCC--
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCE---EEEehhhhcc--
Confidence 4678988888887765542100000 00013457899999999999999999998 344333 3344332111
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHH-HhcCCceEEEeecccCC-------C---Chh---hHHHHHHhccC--CCC
Q 037574 240 RVAKAILESLKGSVSSQVEMETVLQYINE-FVQGKKVLLVLDDVWWN-------A---CPR---YWEQLMYSLKS--GSE 303 (961)
Q Consensus 240 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~-------~---~~~---~~~~l~~~l~~--~~~ 303 (961)
. ... +.+...+.+.. .-...+++|++|++..- . +.. ....+...+.. ...
T Consensus 254 ------------k-~~G-ese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 319 (437)
T 4b4t_L 254 ------------K-YIG-ESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319 (437)
T ss_dssp ------------S-SSS-HHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT
T ss_pred ------------c-cch-HHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC
Confidence 0 011 11222222222 23467899999999410 0 111 12223333332 223
Q ss_pred CcEEEEecCCCccccc-ccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCch
Q 037574 304 GSRILVTRRGEKNGTN-MTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLP 381 (961)
Q Consensus 304 gs~ilvTtR~~~v~~~-~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~P 381 (961)
+..||.||...+.... +-.. +.-...+.+..-+.++-.++|+.+.-.-.. ....++ ..|++.+.|.-
T Consensus 320 ~vivI~ATNrp~~LDpAllRp------GRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRP------GRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTST------TSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCCH----HHHHHTCCSCC
T ss_pred CeEEEEecCCchhhCHHHhCC------CccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccCH----HHHHHhCCCCC
Confidence 5567778765543221 1110 111156888888888888898877643222 112233 45677777753
No 211
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.0039 Score=67.52 Aligned_cols=187 Identities=17% Similarity=0.113 Sum_probs=98.0
Q ss_pred CccccchHHHHHHHHHHhCCCCCCc---CCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEE---SGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEI 239 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 239 (961)
.++.|-++.+++|.+.+.-+-...+ .-+....+-|.++|++|.|||.||+.+++ .....| +.|..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~s-- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF---IRVSGAELVQ-- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE---EEEEGGGGSC--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc---eEEEhHHhhc--
Confidence 4578988888887765542100000 00013346688999999999999999998 344333 3344332110
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHH-HhcCCceEEEeecccCC-------CCh---h---hHHHHHHhccC--CCC
Q 037574 240 RVAKAILESLKGSVSSQVEMETVLQYINE-FVQGKKVLLVLDDVWWN-------ACP---R---YWEQLMYSLKS--GSE 303 (961)
Q Consensus 240 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~-------~~~---~---~~~~l~~~l~~--~~~ 303 (961)
.. - .+.+...+.+.. .-...+++|++|++..- ... . ....+...+.. ...
T Consensus 221 ------------k~-v-Gese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 286 (405)
T 4b4t_J 221 ------------KY-I-GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK 286 (405)
T ss_dssp ------------SS-T-THHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC
T ss_pred ------------cc-c-chHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC
Confidence 00 0 111222222222 22467899999999510 000 1 12223333332 233
Q ss_pred CcEEEEecCCCccccc-ccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCch
Q 037574 304 GSRILVTRRGEKNGTN-MTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLP 381 (961)
Q Consensus 304 gs~ilvTtR~~~v~~~-~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~P 381 (961)
+-.||.||...+.... +-.. +.-...+.+..-+.++-.++|+.+.-.... ....++ ..|++.+.|.-
T Consensus 287 ~V~vIaATNrpd~LDpAllRp------GRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-~~dvdl----~~lA~~t~G~S 354 (405)
T 4b4t_J 287 NIKIIMATNRLDILDPALLRP------GRIDRKIEFPPPSVAARAEILRIHSRKMNL-TRGINL----RKVAEKMNGCS 354 (405)
T ss_dssp CEEEEEEESCSSSSCHHHHST------TSSCCEEECCCCCHHHHHHHHHHHHTTSBC-CSSCCH----HHHHHHCCSCC
T ss_pred CeEEEeccCChhhCCHhHcCC------CcCceEEEcCCcCHHHHHHHHHHHhcCCCC-CccCCH----HHHHHHCCCCC
Confidence 4456777765554332 2111 111167888888999999999877633221 222233 45667777643
No 212
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.42 E-value=0.0062 Score=62.85 Aligned_cols=191 Identities=13% Similarity=0.160 Sum_probs=93.6
Q ss_pred CccccchHHHHHHHHHHh---CCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHH
Q 037574 163 LEFHGRNVEKKNILQLLK---GESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEI 239 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~---~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 239 (961)
.+++|.+..++++.+.+. ....-.. -+....+-+.|+|++|+||||||+.+++. ....| +.++.+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~i~~~~~~~-- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQK-LGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSDFVE-- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC------CCCCEEEEECCTTSCHHHHHHHHHHH--HTCCE---EEECSCSSTT--
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHH-cCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCCE---EEEeHHHHHH--
Confidence 468999887777655432 2100000 00012345889999999999999999873 32222 3333222110
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccC--CC-------Ch----hhHHHHHHhccC--CCCC
Q 037574 240 RVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWW--NA-------CP----RYWEQLMYSLKS--GSEG 304 (961)
Q Consensus 240 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~--~~-------~~----~~~~~l~~~l~~--~~~g 304 (961)
... ......+...+.......+.++++|++.. .. .. .....+...+.. ...+
T Consensus 84 --------~~~-----~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (257)
T 1lv7_A 84 --------MFV-----GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 150 (257)
T ss_dssp --------SCC-----CCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSC
T ss_pred --------Hhh-----hhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCC
Confidence 000 01112222333333345678999999830 00 00 122223333322 2334
Q ss_pred cEEEEecCCCccc-ccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCC-chH
Q 037574 305 SRILVTRRGEKNG-TNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKG-LPF 382 (961)
Q Consensus 305 s~ilvTtR~~~v~-~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G-~PL 382 (961)
..||.||...... ...... +.-...+.+...+.++-.+++....-.... .+... ...++..+.| .+-
T Consensus 151 ~~vI~~tn~~~~l~~~l~r~------~rf~~~i~i~~P~~~~r~~il~~~~~~~~l-~~~~~----~~~la~~~~G~~~~ 219 (257)
T 1lv7_A 151 IIVIAATNRPDVLDPALLRP------GRFDRQVVVGLPDVRGREQILKVHMRRVPL-APDID----AAIIARGTPGFSGA 219 (257)
T ss_dssp EEEEEEESCTTTSCGGGGST------TSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCCHH
T ss_pred EEEEEeeCCchhCCHHHcCC------CcCCeEEEeCCCCHHHHHHHHHHHHhcCCC-Ccccc----HHHHHHHcCCCCHH
Confidence 5667777655422 211110 011146778888888888888776532111 11111 2346677777 554
Q ss_pred HHH
Q 037574 383 AVK 385 (961)
Q Consensus 383 ai~ 385 (961)
-+.
T Consensus 220 dl~ 222 (257)
T 1lv7_A 220 DLA 222 (257)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 213
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.37 E-value=0.0011 Score=75.01 Aligned_cols=107 Identities=13% Similarity=-0.042 Sum_probs=60.9
Q ss_pred eEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCcccccc------cccccccCCCCCcceeecCCCChHHHHH
Q 037574 275 VLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNGTNM------TEIGLGEKDGTNMTEIGLGELSAKECRS 348 (961)
Q Consensus 275 ~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~------~~~~~~~~~~~~~~~~~l~~L~~~~~~~ 348 (961)
-++++|++. .-+.+..+.+...+...... .+|+.| +..+.... ....+...-..+...+.+.+++.++..+
T Consensus 297 ~VliIDEa~-~l~~~a~~aLlk~lEe~~~~-~~il~t-n~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~ 373 (456)
T 2c9o_A 297 GVLFVDEVH-MLDIECFTYLHRALESSIAP-IVIFAS-NRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQ 373 (456)
T ss_dssp CEEEEESGG-GCBHHHHHHHHHHTTSTTCC-EEEEEE-CCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHH
T ss_pred eEEEEechh-hcCHHHHHHHHHHhhccCCC-EEEEec-CCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHH
Confidence 389999996 55667788888887765544 344344 11000000 0000000011233678999999999999
Q ss_pred HHHHHHcCCCCCCCccchHHHHHHHHHhc-CCchHHHHHHH
Q 037574 349 LFRQIAFDGRSSDDREKFEPIGRLVVGKC-KGLPFAVKILG 388 (961)
Q Consensus 349 Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c-~G~PLai~~~~ 388 (961)
++...+-..... --.+....|++.+ +|.|-.+..+.
T Consensus 374 iL~~~~~~~~~~----~~~~~~~~i~~~a~~g~~r~a~~ll 410 (456)
T 2c9o_A 374 IIKIRAQTEGIN----ISEEALNHLGEIGTKTTLRYSVQLL 410 (456)
T ss_dssp HHHHHHHHHTCC----BCHHHHHHHHHHHHHSCHHHHHHTH
T ss_pred HHHHHHHHhCCC----CCHHHHHHHHHHccCCCHHHHHHHH
Confidence 998775321111 1234567778888 78887554443
No 214
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.37 E-value=7.7e-05 Score=81.20 Aligned_cols=38 Identities=16% Similarity=0.030 Sum_probs=17.3
Q ss_pred cCCCcEeecCCCCCCccccccc---ccCCCCcEEEeCCccc
Q 037574 651 LYNLQTLELSWCSNLRNLPQGM---GKLINLRHVVNVGTPL 688 (961)
Q Consensus 651 L~~L~~L~l~~~~~l~~lP~~i---~~L~~L~~L~l~~~~l 688 (961)
+++|++|++++|......+..+ ..+++|++|+++.|.+
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 4556666665554211111112 1345566666555443
No 215
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.0038 Score=68.65 Aligned_cols=187 Identities=16% Similarity=0.160 Sum_probs=92.8
Q ss_pred CCccccchHHHHHHHHHHhCCCCCCc---CCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCH
Q 037574 162 PLEFHGRNVEKKNILQLLKGESSDEE---SGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDE 238 (961)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~~~~~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 238 (961)
-.++.|-++.+++|.+.+.-.-...+ .-+....+-|.++|++|+|||+||+.+++ .....| +.|+.+.-.+
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~--~~~~~~---~~v~~~~l~~- 244 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN--STKAAF---IRVNGSEFVH- 244 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH--HHTCEE---EEEEGGGTCC-
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCCe---EEEecchhhc-
Confidence 34688999888888776542100000 00013456789999999999999999998 344333 3344332111
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccC---------C-CChh---hHHHHHHhccC--CCC
Q 037574 239 IRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWW---------N-ACPR---YWEQLMYSLKS--GSE 303 (961)
Q Consensus 239 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~---------~-~~~~---~~~~l~~~l~~--~~~ 303 (961)
. .-......+...+...-...++++++|++.. . .+.. ....+...+.. ...
T Consensus 245 -------------~-~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~ 310 (428)
T 4b4t_K 245 -------------K-YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST 310 (428)
T ss_dssp -------------S-SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC
T ss_pred -------------c-ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC
Confidence 0 0011111222222223346789999999830 0 0111 12223333321 234
Q ss_pred CcEEEEecCCCccccc-ccccccccCCCCCc-ceeecCCCC-hHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCc
Q 037574 304 GSRILVTRRGEKNGTN-MTEIGLGEKDGTNM-TEIGLGELS-AKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGL 380 (961)
Q Consensus 304 gs~ilvTtR~~~v~~~-~~~~~~~~~~~~~~-~~~~l~~L~-~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~ 380 (961)
+-.||.||...+.... +-. +.++ ..+.+.+++ .++-..+|+.+.-.... .+..++ ..|++.+.|.
T Consensus 311 ~v~vI~aTN~~~~LD~AllR-------pGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l-~~~~dl----~~lA~~t~G~ 378 (428)
T 4b4t_K 311 NVKVIMATNRADTLDPALLR-------PGRLDRKIEFPSLRDRRERRLIFGTIASKMSL-APEADL----DSLIIRNDSL 378 (428)
T ss_dssp SEEEEEEESCSSSCCHHHHS-------SSSEEEEEECCSSCCHHHHHHHHHHHHHSSCB-CTTCCH----HHHHHHTTTC
T ss_pred CEEEEEecCChhhcChhhhc-------CCcceEEEEcCCCCCHHHHHHHHHHHhcCCCC-CcccCH----HHHHHHCCCC
Confidence 5566777765553322 111 1111 457776664 45555666665432221 122233 4456667664
No 216
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.28 E-value=0.0043 Score=75.21 Aligned_cols=160 Identities=17% Similarity=0.185 Sum_probs=86.5
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhc------cCceeEEE-EeCCC
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKA------NFDKRIWV-SASCP 235 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~------~F~~~~wv-~~s~~ 235 (961)
..++||+.+++++.+.|... ...-+.|+|.+|+||||+|+.+++. +.. .....+|. ..+..
T Consensus 186 d~~iGr~~~i~~l~~~l~~~----------~~~~vlL~G~~GtGKT~la~~la~~--l~~~~v~~~~~~~~~~~~~~~~l 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR----------RKNNPLLVGESGVGKTAIAEGLAWR--IVQGDVPEVMADCTIYSLDIGSL 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS----------SSCEEEEECCTTSSHHHHHHHHHHH--HHHTCSCGGGTTCEEEECCCC--
T ss_pred CCccCCHHHHHHHHHHHhcc----------CCCCeEEEcCCCCCHHHHHHHHHHH--HHhCCCChhhcCCEEEEEcHHHH
Confidence 45899999999999998753 3345789999999999999999873 311 12333332 11110
Q ss_pred CCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh-cCCceEEEeecccCCC--------ChhhHHH-HHHhccCCCCCc
Q 037574 236 RDEIRVAKAILESLKGSVSSQVEMETVLQYINEFV-QGKKVLLVLDDVWWNA--------CPRYWEQ-LMYSLKSGSEGS 305 (961)
Q Consensus 236 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~~--------~~~~~~~-l~~~l~~~~~gs 305 (961)
+.+.. .....+.....+.+.+ ..++.+|++||+. .- ....... +...+. ..+.
T Consensus 254 -------------~~~~~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~-~l~~~~~~~~~~~~~~~~L~~~l~--~~~~ 316 (758)
T 1r6b_X 254 -------------LAGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIH-TIIGAGAASGGQVDAANLIKPLLS--SGKI 316 (758)
T ss_dssp --------------CCCC-CSSCHHHHHHHHHHHHSSSSCEEEEETTTT-TTTTSCCSSSCHHHHHHHHSSCSS--SCCC
T ss_pred -------------hcccc-ccchHHHHHHHHHHHHHhcCCeEEEEechH-HHhhcCCCCcchHHHHHHHHHHHh--CCCe
Confidence 00111 1122333333333333 3467899999995 11 1111111 222222 2344
Q ss_pred EEEEecCCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHH
Q 037574 306 RILVTRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIA 354 (961)
Q Consensus 306 ~ilvTtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 354 (961)
.+|.+|............ ..-..++..+.+.+.+.++..+++....
T Consensus 317 ~~I~at~~~~~~~~~~~d---~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 317 RVIGSTTYQEFSNIFEKD---RALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp EEEEEECHHHHHCCCCCT---TSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred EEEEEeCchHHhhhhhcC---HHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 566666533221111100 0001123678999999999998887653
No 217
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.25 E-value=0.00025 Score=72.98 Aligned_cols=59 Identities=29% Similarity=0.369 Sum_probs=26.8
Q ss_pred cCCcccEEEccCCChhhhhhhc---ccchhhcCCCCcceEeccCCCCcccCCcchhccC--CCcEeecCCCC
Q 037574 597 QLTCLRTLELSNHDNVLCKVIK---KVPKQIKRLIHLRYLNLSKNNKIKKLPKTLCELY--NLQTLELSWCS 663 (961)
Q Consensus 597 ~l~~Lr~L~L~~~~~~~~~~~~---~lp~~i~~l~~Lr~L~L~~~~~i~~lp~~i~~L~--~L~~L~l~~~~ 663 (961)
++++|++|+|++|. +. .+|..+..+++|++|+|++|. +..+ ..+..+. +|++|+|++|.
T Consensus 168 ~l~~L~~L~Ls~N~------l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNNR------LYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTSC------CCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTST
T ss_pred hCCCCCEEECCCCC------CCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCc
Confidence 44555555555552 22 223334445555555555554 4443 2233333 45555555544
No 218
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.24 E-value=0.00021 Score=66.85 Aligned_cols=85 Identities=18% Similarity=0.187 Sum_probs=49.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCc
Q 037574 195 PVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKK 274 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 274 (961)
..++|+|+.|+|||||++.++..... ..+ .++++........ . +..+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~-~~~~~~~~~~~~~-----------------------------~-~~~~~ 84 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALE-AGK-NAAYIDAASMPLT-----------------------------D-AAFEA 84 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHT-TTC-CEEEEETTTSCCC-----------------------------G-GGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHh-cCC-cEEEEcHHHhhHH-----------------------------H-HHhCC
Confidence 57999999999999999999984321 111 2566665432211 0 12345
Q ss_pred eEEEeecccCCCChhhHHHHHHhccCC-CCC-cEEEEecC
Q 037574 275 VLLVLDDVWWNACPRYWEQLMYSLKSG-SEG-SRILVTRR 312 (961)
Q Consensus 275 ~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~g-s~ilvTtR 312 (961)
-+|||||+. ..+...-+.+...+... ..| +.||+||+
T Consensus 85 ~lLilDE~~-~~~~~~~~~l~~li~~~~~~g~~~iiits~ 123 (149)
T 2kjq_A 85 EYLAVDQVE-KLGNEEQALLFSIFNRFRNSGKGFLLLGSE 123 (149)
T ss_dssp SEEEEESTT-CCCSHHHHHHHHHHHHHHHHTCCEEEEEES
T ss_pred CEEEEeCcc-ccChHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence 689999996 33332233343333321 123 34888886
No 219
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.0095 Score=65.47 Aligned_cols=186 Identities=14% Similarity=0.128 Sum_probs=96.5
Q ss_pred CccccchHHHHHHHHHHhCCCCCCc---CCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEE---SGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEI 239 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 239 (961)
.++.|-++.+++|.+.+.-.-...+ .-+-...+-|.++|++|.|||+||+.+++ .....| +.|..+.-.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f---i~vs~s~L~--- 280 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF---IRVIGSELV--- 280 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGGC---
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe---EEEEhHHhh---
Confidence 3578988888888765431000000 00013467789999999999999999998 344333 334432211
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHH-HHHhcCCceEEEeecccCC-------CCh---h---hHHHHHHhccC--CCC
Q 037574 240 RVAKAILESLKGSVSSQVEMETVLQYI-NEFVQGKKVLLVLDDVWWN-------ACP---R---YWEQLMYSLKS--GSE 303 (961)
Q Consensus 240 ~~~~~il~~l~~~~~~~~~~~~~~~~l-~~~l~~kr~LlVlDdvw~~-------~~~---~---~~~~l~~~l~~--~~~ 303 (961)
... -. +.+...+.+ ...-...+++|++|++..- ... . ....+...+.. ...
T Consensus 281 -----------sk~-vG-esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 281 -----------QKY-VG-EGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp -----------CCS-SS-HHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred -----------ccc-CC-HHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 000 01 112222222 2233467899999999410 000 0 11122222222 223
Q ss_pred CcEEEEecCCCccccc-ccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCc
Q 037574 304 GSRILVTRRGEKNGTN-MTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGL 380 (961)
Q Consensus 304 gs~ilvTtR~~~v~~~-~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~ 380 (961)
+-.||.||...+.... +-.. +.-...+.+..-+.++-.++|+.+.-.-.. ....++ ..|++.|.|.
T Consensus 348 ~ViVIaATNrpd~LDpALlRp------GRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l-~~dvdl----~~LA~~T~Gf 414 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRP------GRIDRKVEFSLPDLEGRANIFRIHSKSMSV-ERGIRW----ELISRLCPNS 414 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHST------TTCCEEECCCCCCHHHHHHHHHHHHTTSCB-CSSCCH----HHHHHHCCSC
T ss_pred cEEEEeCCCCcccCChhhhcc------ccccEEEEeCCcCHHHHHHHHHHHhcCCCC-CCCCCH----HHHHHHCCCC
Confidence 4456667755543322 2111 111167888888999999999877633221 122233 4466777775
No 220
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.23 E-value=0.0077 Score=67.48 Aligned_cols=188 Identities=13% Similarity=0.126 Sum_probs=96.5
Q ss_pred CccccchHHHHHHHHHHhCCCCCC--cCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDE--ESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIR 240 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~--~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 240 (961)
.+++|.+..++++.+.+..-.... ..-+....+-|.|+|++|+|||+||+.+++. ....| +.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~f---~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVPF---FHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCCE---EEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCCe---eeCCHHHHHHH--
Confidence 468999887777665543210000 0000012345889999999999999999983 33222 23443322110
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCC----------Ch---hhHHHHHHhccC--CCCCc
Q 037574 241 VAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNA----------CP---RYWEQLMYSLKS--GSEGS 305 (961)
Q Consensus 241 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~----------~~---~~~~~l~~~l~~--~~~gs 305 (961)
+ ...........+.....+.+.+|++|++..-. +. .....+...+.. ...+.
T Consensus 89 --------~-----~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 89 --------F-----VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp --------C-----TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred --------H-----hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE
Confidence 0 00111222333444445678999999994100 00 122333333321 12355
Q ss_pred EEEEecCCCccccc-ccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCch
Q 037574 306 RILVTRRGEKNGTN-MTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLP 381 (961)
Q Consensus 306 ~ilvTtR~~~v~~~-~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~P 381 (961)
.||.||...+.... .-.. +.-...+.+...+.++-.++++.++-.... .+... ...|++.+.|..
T Consensus 156 iVIaaTn~~~~Ld~allR~------gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l-~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 156 IVMAATNRPDILDPALLRP------GRFDKKIVVDPPDMLGRKKILEIHTRNKPL-AEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEESCGGGSCGGGGST------TSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCC
T ss_pred EEEEecCChhhhchhhccc------CcceeEeecCCCCHHHHHHHHHHHHHhCCC-cchhh----HHHHHHhcCCCc
Confidence 67777766543221 1110 011147788888888888888776633221 11122 334777888876
No 221
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.0053 Score=67.60 Aligned_cols=186 Identities=12% Similarity=0.091 Sum_probs=95.6
Q ss_pred CccccchHHHHHHHHHHhCCCCCCc---CCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEE---SGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEI 239 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 239 (961)
.++.|-++.+++|.+.+...-...+ ..+....+-|.++|++|.|||+||+.+++ .....| +.++.+.-.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~--- 252 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA--QTNATF---LKLAAPQLV--- 252 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGGC---
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH--HhCCCE---EEEehhhhh---
Confidence 4688999888888765432100000 00013457899999999999999999998 343333 333332211
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHH-HhcCCceEEEeecccC------C-CC--hhh----HHHHHHhccCC--CC
Q 037574 240 RVAKAILESLKGSVSSQVEMETVLQYINE-FVQGKKVLLVLDDVWW------N-AC--PRY----WEQLMYSLKSG--SE 303 (961)
Q Consensus 240 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~------~-~~--~~~----~~~l~~~l~~~--~~ 303 (961)
... ..+.+...+.+.. .-...+++|++|++.. . .. ... ...+...+... ..
T Consensus 253 -----------~~~--vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~ 319 (434)
T 4b4t_M 253 -----------QMY--IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD 319 (434)
T ss_dssp -----------SSC--SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC
T ss_pred -----------hcc--cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC
Confidence 000 0111222222222 2245789999999830 0 00 011 12233333322 23
Q ss_pred CcEEEEecCCCccccc-ccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCc
Q 037574 304 GSRILVTRRGEKNGTN-MTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGL 380 (961)
Q Consensus 304 gs~ilvTtR~~~v~~~-~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~ 380 (961)
+-.||.||...+.... +-.. +.-...+.+..-+.++-.++|+.+.-.-.. ...-++ ..|++.+.|.
T Consensus 320 ~ViVIaaTNrp~~LD~AllRp------GRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvdl----~~lA~~t~G~ 386 (434)
T 4b4t_M 320 RVKVLAATNRVDVLDPALLRS------GRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDINW----QELARSTDEF 386 (434)
T ss_dssp SSEEEEECSSCCCCCTTTCST------TSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCCH----HHHHHHCSSC
T ss_pred CEEEEEeCCCchhcCHhHhcC------CceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCCH----HHHHHhCCCC
Confidence 4456667765543321 1110 111156888888888888888776532221 112233 4566777764
No 222
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.18 E-value=0.00044 Score=83.77 Aligned_cols=165 Identities=15% Similarity=0.194 Sum_probs=89.8
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVA 242 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 242 (961)
..++|.+..++.+...+.....+.. ........+.++|++|+|||++|+.+++. ....-...+.++++...+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~-~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~~~-- 565 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLK-DPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEKHS-- 565 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCS-CTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSSCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccC-CCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhcccccc--
Confidence 4589999999888887764321100 00122337999999999999999999883 322222344555543221100
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-----------CCCcEEEEec
Q 037574 243 KAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-----------SEGSRILVTR 311 (961)
Q Consensus 243 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTt 311 (961)
. ....+...++ .....+|+||++. ..+.+....+...+..+ .....||.||
T Consensus 566 ------------~--~~~~l~~~~~---~~~~~vl~lDEi~-~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 566 ------------T--SGGQLTEKVR---RKPYSVVLLDAIE-KAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp ------------C--C---CHHHHH---HCSSSEEEEECGG-GSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred ------------c--ccchhhHHHH---hCCCeEEEEeCcc-ccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 0 0011111111 1334599999996 55666667777666542 1345788888
Q ss_pred CCCccc---------ccccccccccCCCCCcceeecCCCChHHHHHHHHHHH
Q 037574 312 RGEKNG---------TNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIA 354 (961)
Q Consensus 312 R~~~v~---------~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 354 (961)
....-. ..+... + ...-...+.+.++++++-..++....
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~-l---~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPE-F---INRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHH-H---HTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHhhCCHH-H---HhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 632210 001100 0 00111578899999988888776653
No 223
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.17 E-value=0.00041 Score=67.77 Aligned_cols=97 Identities=15% Similarity=0.186 Sum_probs=72.0
Q ss_pred chhhhccCCcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCccc-----CCcchhccCCCcEeecCCCCCC
Q 037574 591 LSKVFDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKK-----LPKTLCELYNLQTLELSWCSNL 665 (961)
Q Consensus 591 ~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~l 665 (961)
+...+...+.|++|+|++|..+.......+...+...++|++|+|++|. +.. +...+...++|++|+|++|. +
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i 105 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF-I 105 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC-C
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc-C
Confidence 4556788999999999998222222345566777888999999999998 653 45556677899999999987 5
Q ss_pred cc-----cccccccCCCCcEEEe--CCcccc
Q 037574 666 RN-----LPQGMGKLINLRHVVN--VGTPLS 689 (961)
Q Consensus 666 ~~-----lP~~i~~L~~L~~L~l--~~~~l~ 689 (961)
.. +...+...++|++|++ ++|.+.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 43 4566777888999999 666553
No 224
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.17 E-value=0.0011 Score=80.25 Aligned_cols=154 Identities=16% Similarity=0.214 Sum_probs=80.8
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhcc-----CceeEEEEeCCCCC
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKAN-----FDKRIWVSASCPRD 237 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~~s~~~~ 237 (961)
..++||+.+++++.+.|... ...-+.++|++|+|||++|+.+++. +... ....-++.++.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~----------~~~~vLL~G~pGtGKT~la~~la~~--l~~~~~p~~l~~~~~~~~~~--- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRR----------TKNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDM--- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCS----------SSCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC-----
T ss_pred CCccCchHHHHHHHHHHhCC----------CCCCeEEECCCCCCHHHHHHHHHHH--HhcCCCChhhcCCeEEEecc---
Confidence 35999999999999999763 2334789999999999999999873 3111 01111222211
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCccc
Q 037574 238 EIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNG 317 (961)
Q Consensus 238 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 317 (961)
.....+.. . ..+...+......++.+|++|.- .+.-..+...+. ....++|.||......
T Consensus 245 --------g~~~~G~~--e---~~l~~~~~~~~~~~~~iLfiD~~-----~~~~~~L~~~l~--~~~v~~I~at~~~~~~ 304 (758)
T 3pxi_A 245 --------GTKYRGEF--E---DRLKKVMDEIRQAGNIILFIDAA-----IDASNILKPSLA--RGELQCIGATTLDEYR 304 (758)
T ss_dssp ------------------C---TTHHHHHHHHHTCCCCEEEECC-------------CCCTT--SSSCEEEEECCTTTTH
T ss_pred --------cccccchH--H---HHHHHHHHHHHhcCCEEEEEcCc-----hhHHHHHHHHHh--cCCEEEEeCCChHHHH
Confidence 00000000 0 11222233333467889999922 122222332332 2234666666544411
Q ss_pred ccccccccccCCCCCcceeecCCCChHHHHHHHHHHH
Q 037574 318 TNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIA 354 (961)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 354 (961)
...... ..-..++..+.+.+.+.++..+++....
T Consensus 305 ~~~~~d---~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 305 KYIEKD---AALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HHHTTC---SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHhhcc---HHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 100000 0000123679999999999999998654
No 225
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.012 Score=64.03 Aligned_cols=186 Identities=12% Similarity=0.096 Sum_probs=95.5
Q ss_pred CccccchHHHHHHHHHHhCCCCCCc---CCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEE---SGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEI 239 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 239 (961)
.++.|-++.+++|.+.+.-.-...+ ..+....+-|.++|++|.|||.||+.+++ .....| +.++.+.-.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~--e~~~~f---i~v~~s~l~--- 253 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN--QTSATF---LRIVGSELI--- 253 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH--HHTCEE---EEEESGGGC---
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH--HhCCCE---EEEEHHHhh---
Confidence 3578888888887765532100000 00013457799999999999999999998 344333 223322111
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHh-cCCceEEEeecccCC-------C---Chh---hHHHHHHhcc--CCCC
Q 037574 240 RVAKAILESLKGSVSSQVEMETVLQYINEFV-QGKKVLLVLDDVWWN-------A---CPR---YWEQLMYSLK--SGSE 303 (961)
Q Consensus 240 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~-------~---~~~---~~~~l~~~l~--~~~~ 303 (961)
... ..+.+...+.+.... ...+++|++|++..- . +.. ....+...+. ....
T Consensus 254 -----------sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~ 320 (437)
T 4b4t_I 254 -----------QKY--LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG 320 (437)
T ss_dssp -----------CSS--SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS
T ss_pred -----------hcc--CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC
Confidence 000 111222233333322 457899999998410 0 011 1222222222 1223
Q ss_pred CcEEEEecCCCccccc-ccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCc
Q 037574 304 GSRILVTRRGEKNGTN-MTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGL 380 (961)
Q Consensus 304 gs~ilvTtR~~~v~~~-~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~ 380 (961)
+-.||.||...+.... +-.. +.-...+.+..-+.++-.++|+.+.-.... ....++ ..|++.+.|.
T Consensus 321 ~ViVIaATNrpd~LDpALlRp------GRfD~~I~v~lPd~~~R~~Il~~~l~~~~l-~~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRP------GRIDRKILFENPDLSTKKKILGIHTSKMNL-SEDVNL----ETLVTTKDDL 387 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCT------TTEEEEECCCCCCHHHHHHHHHHHHTTSCB-CSCCCH----HHHHHHCCSC
T ss_pred CEEEEEeCCChhhcCHHHhcC------CceeEEEEcCCcCHHHHHHHHHHHhcCCCC-CCcCCH----HHHHHhCCCC
Confidence 4456777765543221 1110 111146778888888888999877633221 222233 4456667664
No 226
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.08 E-value=0.00097 Score=71.22 Aligned_cols=54 Identities=22% Similarity=0.335 Sum_probs=36.5
Q ss_pred CccccchHHHHHHHHHHhCC--CCCCc--CCCCCCccEEEEEcCCCchHHHHHHHHhC
Q 037574 163 LEFHGRNVEKKNILQLLKGE--SSDEE--SGSKPTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~--~~~~~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
..++|.+..++.+...+... ...-. .........+.|+|++|+|||++|+.+.+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 35899999999988877541 00000 00001235678999999999999999987
No 227
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.03 E-value=0.0041 Score=62.40 Aligned_cols=85 Identities=21% Similarity=0.131 Sum_probs=53.2
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCC-----------C-CCcccHH
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGS-----------V-SSQVEME 260 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~-----------~-~~~~~~~ 260 (961)
.-.++.|+|.+|+|||||+..++. . .-..++|++....++..++.. +.+.++.. . ....+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~--~---~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL--L---SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--H---HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--H---cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 446999999999999999999987 1 124678888766556554433 33332211 1 1112223
Q ss_pred HHHHHHHHHhcCCceEEEeeccc
Q 037574 261 TVLQYINEFVQGKKVLLVLDDVW 283 (961)
Q Consensus 261 ~~~~~l~~~l~~kr~LlVlDdvw 283 (961)
.....++..+..+.-+||+|.+-
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcH
Confidence 34455555554457799999884
No 228
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.92 E-value=0.00035 Score=72.98 Aligned_cols=55 Identities=20% Similarity=0.300 Sum_probs=34.3
Q ss_pred CccccchHHHHHHHHHHhCCCCCCc--CCCCCCccEEEEEcCCCchHHHHHHHHhCC
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEE--SGSKPTLPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
.+++|.+..++.+.+.+..-...+. .-+....+-+.|+|++|+|||+||+.+++.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 4688988877777765541000000 000011233779999999999999999883
No 229
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.89 E-value=0.018 Score=63.68 Aligned_cols=274 Identities=13% Similarity=0.070 Sum_probs=135.0
Q ss_pred CCccEEEEEeccCCCCCcccccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccc-hhhcC
Q 037574 548 EKFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVP-KQIKR 626 (961)
Q Consensus 548 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~ 626 (961)
.+++.+.+.. .+...-...|.+|++|+++.+..+- . .+....|..+..|+.+.+..+ +..+. ..+..
T Consensus 71 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~l---~-~I~~~aF~~c~~L~~i~~p~~-------l~~i~~~aF~~ 138 (394)
T 4fs7_A 71 RKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDSV---K-MIGRCTFSGCYALKSILLPLM-------LKSIGVEAFKG 138 (394)
T ss_dssp TTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTTC---C-EECTTTTTTCTTCCCCCCCTT-------CCEECTTTTTT
T ss_pred CCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCCc---e-EccchhhcccccchhhcccCc-------eeeecceeeec
Confidence 4566666642 2322223578899999999987542 2 334556888888888777765 44432 23444
Q ss_pred CCCcceEeccCCCCcccCC-cchhccCCCcEeecCCCCCCcccccc-cccCCCCcEEEeCCcccccCCc-CCCCCCCCCc
Q 037574 627 LIHLRYLNLSKNNKIKKLP-KTLCELYNLQTLELSWCSNLRNLPQG-MGKLINLRHVVNVGTPLSYMPK-GIERWSCLRT 703 (961)
Q Consensus 627 l~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~l~~~p~-~i~~L~~L~~ 703 (961)
+..+....... +..+. ..+.++.+|+.+.+..+ +..++.. +..+.+|+.+.+..+ +..++. .+..+..|+.
T Consensus 139 ~~~~~~~~~~~---~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~ 212 (394)
T 4fs7_A 139 CDFKEITIPEG---VTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN 212 (394)
T ss_dssp CCCSEEECCTT---CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB
T ss_pred ccccccccCcc---ccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccce
Confidence 44333333222 22332 45777888888888643 4555543 566778888777543 344333 2444555554
Q ss_pred CCceEecCCCCCCCCCChhhhhcccccCCceeEcCCCCCChhhhHhhccccccccCceeEEecCCCCcCCCccchHHHHh
Q 037574 704 LSEFIVSGGNDDKKASKLECLKSLNHLQGSLNIKGLGNVDKDEIFKAELSKREKLLALGISFDRDDEEGRKKEDDEAVVE 783 (961)
Q Consensus 704 L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 783 (961)
+... ... ...+........|+ .+.+.. .. ...-...+..+..|+.+.+..+...- ...
T Consensus 213 i~~~---~~~-~~i~~~~~~~~~l~----~i~ip~--~~--~~i~~~~f~~~~~l~~~~~~~~~~~i----------~~~ 270 (394)
T 4fs7_A 213 MEFP---NSL-YYLGDFALSKTGVK----NIIIPD--SF--TELGKSVFYGCTDLESISIQNNKLRI----------GGS 270 (394)
T ss_dssp CCCC---TTC-CEECTTTTTTCCCC----EEEECT--TC--CEECSSTTTTCSSCCEEEECCTTCEE----------CSC
T ss_pred eecC---CCc-eEeehhhcccCCCc----eEEECC--Cc--eecccccccccccceeEEcCCCccee----------ecc
Confidence 4321 100 00011111111222 222211 00 00011224455666666665432100 001
Q ss_pred cCCCCCCcCceEEeeecCccccccccccccCceEEEEeCCCCCCcCC--CCCCCCccceeeeccccCceEeCccccccCC
Q 037574 784 GLELPSNLESMEMFYYRGESISLMMIMLSNKLRSLTLDRCVNLKQLP--GLGGLPSLESLTLRNMKRIEKVGNEFLLTDR 861 (961)
Q Consensus 784 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~--~l~~lp~L~~L~L~~~~~l~~l~~~~~~~~~ 861 (961)
....+..++.+..... .+.......+.+|+.+.+.++ ++.++ .+..+.+|+.++|.+ .++.++...+
T Consensus 271 ~F~~~~~l~~~~~~~~---~i~~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF---- 339 (394)
T 4fs7_A 271 LFYNCSGLKKVIYGSV---IVPEKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSF---- 339 (394)
T ss_dssp TTTTCTTCCEEEECSS---EECTTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT--TCCEECTTTT----
T ss_pred ccccccccceeccCce---eeccccccccccccccccccc--cceechhhhcCCCCCCEEEeCC--cccEEhHHhc----
Confidence 1122344554444321 122222235677888877653 44444 356677888887753 4666665433
Q ss_pred CCCCCcccccCcccceeec
Q 037574 862 TSSTGTAVSAFPKLKSLVF 880 (961)
Q Consensus 862 ~~~~~~~~~~fp~L~~L~l 880 (961)
..+.+|+.+.+
T Consensus 340 --------~~c~~L~~i~l 350 (394)
T 4fs7_A 340 --------RGCTSLSNINF 350 (394)
T ss_dssp --------TTCTTCCEECC
T ss_pred --------cCCCCCCEEEE
Confidence 24456666655
No 230
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.87 E-value=0.00074 Score=71.72 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEe
Q 037574 169 NVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSA 232 (961)
Q Consensus 169 ~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 232 (961)
...+..+.+++..... .....+.|+|+.|+|||+||+.+++.... ..-..++++++
T Consensus 134 ~~~~~~~~~~i~~~~~-------~~~~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v~~~~~ 189 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPS-------AEQKGLYLYGDMGIGKSYLLAAMAHELSE-KKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHCSC-------SSCCEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCEEEEEH
T ss_pred HHHHHHHHHHHHhccc-------cCCceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEH
Confidence 3444555566654321 22467899999999999999999984221 22234555654
No 231
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.80 E-value=0.00097 Score=68.63 Aligned_cols=80 Identities=26% Similarity=0.284 Sum_probs=59.7
Q ss_pred cCCCCcceEeccCCCCcccC---CcchhccCCCcEeecCCCCCCcccccccccCC--CCcEEEeCCccccc-CCc-----
Q 037574 625 KRLIHLRYLNLSKNNKIKKL---PKTLCELYNLQTLELSWCSNLRNLPQGMGKLI--NLRHVVNVGTPLSY-MPK----- 693 (961)
Q Consensus 625 ~~l~~Lr~L~L~~~~~i~~l---p~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~--~L~~L~l~~~~l~~-~p~----- 693 (961)
.++++|+.|+|++|. +..+ |..+..+++|++|+|++|. +..+ ..+..+. +|++|++.+|.+.. +|.
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 568899999999998 6654 4667899999999999987 7766 3455555 99999999988763 331
Q ss_pred --CCCCCCCCCcCCce
Q 037574 694 --GIERWSCLRTLSEF 707 (961)
Q Consensus 694 --~i~~L~~L~~L~~~ 707 (961)
-+..+++|+.|+..
T Consensus 244 ~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 244 SAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHCTTCCEESSC
T ss_pred HHHHHHCcccCeECCc
Confidence 14556666666543
No 232
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.74 E-value=0.019 Score=68.34 Aligned_cols=186 Identities=13% Similarity=0.147 Sum_probs=95.8
Q ss_pred ccccchHHHHHHHHHHh----CCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHH
Q 037574 164 EFHGRNVEKKNILQLLK----GESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEI 239 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~----~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 239 (961)
++.|-++.+++|.+++. ...- -..-+....+-|.++|++|+|||+||+.+++. ...+| +.|+.+
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~-f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~------ 272 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPAL-FKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP------ 272 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGG-GTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHH------
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHH-HhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhH------
Confidence 57788877777766543 2110 00001134578999999999999999999994 33333 334321
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCC------CChh----hHHHHHHhccCC--CCCcEE
Q 037574 240 RVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWN------ACPR----YWEQLMYSLKSG--SEGSRI 307 (961)
Q Consensus 240 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~------~~~~----~~~~l~~~l~~~--~~gs~i 307 (961)
. ++.. . .......+...+.......+.+|++|++..- ...+ ...++...+... ..+-.|
T Consensus 273 ~----l~sk----~-~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V 343 (806)
T 3cf2_A 273 E----IMSK----L-AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp H----HHSS----C-TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE
T ss_pred H----hhcc----c-chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE
Confidence 1 1111 0 1111222333333344567899999999410 0011 122222222211 223345
Q ss_pred EEecCCCc-ccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCch
Q 037574 308 LVTRRGEK-NGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLP 381 (961)
Q Consensus 308 lvTtR~~~-v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~P 381 (961)
|.||...+ +-..+... +.-...+.+..-+.++-.++|+.+.-.... ....+ ...|++++.|.-
T Consensus 344 IaaTN~~d~LD~ALrR~------GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~-~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRF------GRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEECSSTTTSCTTTTST------TSSCEEEECCCCCHHHHHHHHHHTCSSSEE-CTTCC----HHHHHHHCCSCC
T ss_pred EEecCChhhcCHHHhCC------cccceEEecCCCCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhcCCCC
Confidence 55665443 22222111 111157888888999999999876532211 22233 345677777764
No 233
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.71 E-value=0.037 Score=61.08 Aligned_cols=107 Identities=14% Similarity=0.170 Sum_probs=58.1
Q ss_pred cccCCC-CccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccc-hhhcCCCCcceEeccCCCCcccC
Q 037574 567 SVYNQK-KLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVP-KQIKRLIHLRYLNLSKNNKIKKL 644 (961)
Q Consensus 567 ~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~i~~l 644 (961)
.|.++. .|+++.+...- . .+-...|.+|.+|+.+.+..+.- ..+..+. ..|..+.+|+.+.+..+ ++.+
T Consensus 58 aF~~~~~~L~sI~iP~sv---t-~Ig~~AF~~C~~L~~i~~~~n~p---~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I 128 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDTV---T-EIGSNAFYNCTSLKRVTIQDNKP---SCVKKIGRQAFMFCSELTDIPILDS--VTEI 128 (394)
T ss_dssp TTTTCCSCCCEEEECTTC---C-EECTTTTTTCTTCCEEEEGGGCC---CCCCEECTTTTTTCTTCCBCGGGTT--CSEE
T ss_pred hccCCCCcCEEEEECCCe---e-EEhHHHhhCCccCceEeecCCCC---CeeeEechhhchhcccceeeccCCc--ccee
Confidence 455553 47777665431 1 33445577777777777765410 1133332 34556666666666543 4444
Q ss_pred C-cchhccCCCcEeecCCCCCCccccc-ccccCCCCcEEEeC
Q 037574 645 P-KTLCELYNLQTLELSWCSNLRNLPQ-GMGKLINLRHVVNV 684 (961)
Q Consensus 645 p-~~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~ 684 (961)
+ ..+..+.+|+.+.+... +..++. .+....+|+.+.+.
T Consensus 129 ~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~ 168 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLP 168 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECC
T ss_pred hhhhhhhhcccccccccce--eeeecccceeccccccccccc
Confidence 4 34566777777777532 444443 34556667766663
No 234
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.71 E-value=0.0028 Score=76.77 Aligned_cols=125 Identities=15% Similarity=0.226 Sum_probs=66.7
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVA 242 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 242 (961)
..++|.+..++.+...+.....+-. ........+.++|++|+|||++|+.+.+. .. ...+.++++...+...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~-~~~~p~~~~ll~G~~GtGKT~la~~la~~--l~---~~~~~i~~s~~~~~~~-- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLG-HEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERHT-- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCS-CTTSCSEEEEEECSTTSSHHHHHHHHHHH--HT---CEEEEEEGGGCSSSSC--
T ss_pred hhccCHHHHHHHHHHHHHHHhcccC-CCCCCceEEEEECCCCCcHHHHHHHHHHH--hc---CCEEEEechhhcchhh--
Confidence 3578999888888776653211000 00022347899999999999999999883 32 2234455443322100
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHh-cCCceEEEeecccCCCChhhHHHHHHhccC
Q 037574 243 KAILESLKGSVSSQVEMETVLQYINEFV-QGKKVLLVLDDVWWNACPRYWEQLMYSLKS 300 (961)
Q Consensus 243 ~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~ 300 (961)
...+.+........++ ...+...+ +....+|+||++. ..+.+....+...+..
T Consensus 530 ---~~~l~g~~~g~~g~~~-~~~l~~~~~~~~~~vl~lDEi~-~~~~~~~~~Ll~~le~ 583 (758)
T 1r6b_X 530 ---VSRLIGAPPGYVGFDQ-GGLLTDAVIKHPHAVLLLDEIE-KAHPDVFNILLQVMDN 583 (758)
T ss_dssp ---CSSSCCCCSCSHHHHH-TTHHHHHHHHCSSEEEEEETGG-GSCHHHHHHHHHHHHH
T ss_pred ---HhhhcCCCCCCcCccc-cchHHHHHHhCCCcEEEEeCcc-ccCHHHHHHHHHHhcC
Confidence 0011111111111111 11122222 2346799999996 4566667777766653
No 235
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.68 E-value=0.0021 Score=62.23 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=21.6
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
+....+.|+|++|+||||+|..+++
T Consensus 56 Pkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 56 PKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred CcccEEEEECCCCCCHHHHHHHHHH
Confidence 3345799999999999999999887
No 236
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.66 E-value=0.0039 Score=67.20 Aligned_cols=158 Identities=13% Similarity=0.132 Sum_probs=85.7
Q ss_pred ccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHH
Q 037574 164 EFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAK 243 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 243 (961)
.++|++..++.+...+... .-+.++|++|+|||+||+.+.+ .....| ..+..+......++..
T Consensus 28 ~i~g~~~~~~~l~~~l~~~------------~~vll~G~pGtGKT~la~~la~--~~~~~~---~~i~~~~~~~~~~l~g 90 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG------------GHILLEGVPGLAKTLSVNTLAK--TMDLDF---HRIQFTPDLLPSDLIG 90 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT------------CCEEEESCCCHHHHHHHHHHHH--HTTCCE---EEEECCTTCCHHHHHE
T ss_pred ceeCcHHHHHHHHHHHHcC------------CeEEEECCCCCcHHHHHHHHHH--HhCCCe---EEEecCCCCChhhcCC
Confidence 5889999999888877642 2488999999999999999987 333222 2234433333333221
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHhcC--CceEEEeecccCCCChhhHHHHHHhccCC-----------CCCcEEEEe
Q 037574 244 AILESLKGSVSSQVEMETVLQYINEFVQG--KKVLLVLDDVWWNACPRYWEQLMYSLKSG-----------SEGSRILVT 310 (961)
Q Consensus 244 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-----------~~gs~ilvT 310 (961)
... .. ....... ...+ ...++++|++. ..+......+...+..+ .....|+.|
T Consensus 91 ~~~--~~-~~~~~~~----------~~~g~l~~~vl~iDEi~-~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat 156 (331)
T 2r44_A 91 TMI--YN-QHKGNFE----------VKKGPVFSNFILADEVN-RSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLAT 156 (331)
T ss_dssp EEE--EE-TTTTEEE----------EEECTTCSSEEEEETGG-GSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEE
T ss_pred cee--ec-CCCCceE----------eccCcccccEEEEEccc-cCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEe
Confidence 110 00 0000000 0001 12599999996 44555555555554321 234455555
Q ss_pred cCCCcccccccccccccCCCCCcc-eeecCCCChHHHHHHHHHHHc
Q 037574 311 RRGEKNGTNMTEIGLGEKDGTNMT-EIGLGELSAKECRSLFRQIAF 355 (961)
Q Consensus 311 tR~~~v~~~~~~~~~~~~~~~~~~-~~~l~~L~~~~~~~Lf~~~~~ 355 (961)
+........ ..+...-..++. .+.+.+.+.++-.+++.+...
T Consensus 157 ~np~~~~~~---~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 157 QNPVEQEGT---YPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp ECTTCCSCC---CCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred cCCCcccCc---ccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 553321100 000000001223 588999999999999988764
No 237
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.62 E-value=0.0045 Score=75.85 Aligned_cols=140 Identities=17% Similarity=0.262 Sum_probs=72.5
Q ss_pred ccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHH
Q 037574 164 EFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAK 243 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 243 (961)
.++|.+..++.+...+.....+- ..+......+.|+|+.|+|||++|+.+.+. ....-...+.++++...... .
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~-~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~~-~-- 632 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGL-KDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-A-- 632 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGC-SCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSSG-G--
T ss_pred ccCCcHHHHHHHHHHHHHHhccc-CCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccchh-H--
Confidence 57999998888888775422100 000022357899999999999999999873 21111123445544332210 0
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHhc-CCceEEEeecccCCCChhhHHHHHHhccCCC-----------CCcEEEEec
Q 037574 244 AILESLKGSVSSQVEMETVLQYINEFVQ-GKKVLLVLDDVWWNACPRYWEQLMYSLKSGS-----------EGSRILVTR 311 (961)
Q Consensus 244 ~il~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTt 311 (961)
...+.+........+. ...+...+. ...-+|+||++. ..+.+....+...+..+. .+..||+||
T Consensus 633 --~s~l~g~~~~~~G~~~-~g~l~~~~~~~~~~vl~lDEi~-~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ts 708 (854)
T 1qvr_A 633 --VSRLIGAPPGYVGYEE-GGQLTEAVRRRPYSVILFDEIE-KAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTS 708 (854)
T ss_dssp --GGGC---------------CHHHHHHHCSSEEEEESSGG-GSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEEC
T ss_pred --HHHHcCCCCCCcCccc-cchHHHHHHhCCCeEEEEeccc-ccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEec
Confidence 0111110000000000 011222222 234689999996 556677777777776542 244477777
Q ss_pred CC
Q 037574 312 RG 313 (961)
Q Consensus 312 R~ 313 (961)
..
T Consensus 709 n~ 710 (854)
T 1qvr_A 709 NL 710 (854)
T ss_dssp CT
T ss_pred Cc
Confidence 64
No 238
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.61 E-value=0.00097 Score=69.66 Aligned_cols=68 Identities=16% Similarity=0.238 Sum_probs=45.8
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEe--CCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhc
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSA--SCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQ 271 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~--s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 271 (961)
.+++.|+|++|+||||||.+++.. .-..++|+++ ....+. . ..+.+...+.+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~---------------~-~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG---------------Y-NTDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT---------------C-BCCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh---------------h-hcCHHHHHHHHHHHHh
Confidence 457789999999999999999873 1123567776 322110 0 1345566666666666
Q ss_pred CCceEEEeeccc
Q 037574 272 GKKVLLVLDDVW 283 (961)
Q Consensus 272 ~kr~LlVlDdvw 283 (961)
..+ +||+|++.
T Consensus 182 ~~~-LLVIDsI~ 192 (331)
T 2vhj_A 182 QHR-VIVIDSLK 192 (331)
T ss_dssp HCS-EEEEECCT
T ss_pred hCC-EEEEeccc
Confidence 666 99999994
No 239
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.50 E-value=0.0072 Score=63.64 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.4
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
..+..+.++|++|+|||+||+.+++
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457889999999999999999998
No 240
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.42 E-value=0.077 Score=58.10 Aligned_cols=64 Identities=19% Similarity=0.276 Sum_probs=31.4
Q ss_pred CCcCceEEeeecCccccccccccccCceEEEEeCCCCCCcCC--CCCCCCccceeeeccccCceEeCccc
Q 037574 789 SNLESMEMFYYRGESISLMMIMLSNKLRSLTLDRCVNLKQLP--GLGGLPSLESLTLRNMKRIEKVGNEF 856 (961)
Q Consensus 789 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~--~l~~lp~L~~L~L~~~~~l~~l~~~~ 856 (961)
.+|+.+.+... ...+.......+.+|+.+.+... +..++ .+..+++|+.+.+.+ ..++.++...
T Consensus 240 ~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~a 305 (379)
T 4h09_A 240 KALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRV 305 (379)
T ss_dssp SSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECC-TTCCEECTTT
T ss_pred ccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccc-cccceehhhh
Confidence 45555555332 11222222224556666666442 33333 355667777777654 3456665443
No 241
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.38 E-value=0.074 Score=54.52 Aligned_cols=187 Identities=13% Similarity=0.121 Sum_probs=87.1
Q ss_pred CccccchHHHHHHHHHHhCCCCCC--cCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDE--ESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIR 240 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~--~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 240 (961)
.+++|.+..+.++.+....-.... ..-+-.-.+-+.|+|++|+||||||+.++.. ... ..+.+.. ..
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~--~~~---~~i~~~~------~~ 84 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--ARV---PFITASG------SD 84 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH--TTC---CEEEEEH------HH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCC---CEEEeeH------HH
Confidence 468888766665544332110000 0000011123899999999999999999873 222 2233331 11
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHh-cCCceEEEeecccCC---------CChhh----HHHHHHhccCCC--CC
Q 037574 241 VAKAILESLKGSVSSQVEMETVLQYINEFV-QGKKVLLVLDDVWWN---------ACPRY----WEQLMYSLKSGS--EG 304 (961)
Q Consensus 241 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~---------~~~~~----~~~l~~~l~~~~--~g 304 (961)
+ ..... . ........+.+.. .....++++|++..- ..... ...+...+..+. ..
T Consensus 85 ~----~~~~~-----~-~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~ 154 (254)
T 1ixz_A 85 F----VEMFV-----G-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 154 (254)
T ss_dssp H----HHSCT-----T-HHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCC
T ss_pred H----HHHHh-----h-HHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCC
Confidence 1 11100 0 0111112222222 245689999999300 00111 122333333322 22
Q ss_pred cEEEEecCCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCc
Q 037574 305 SRILVTRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGL 380 (961)
Q Consensus 305 s~ilvTtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~ 380 (961)
..++.||..+......-. ....-...+.+...+.++-.++++..+-.... ..... ...|++.+.|.
T Consensus 155 ~i~~a~t~~p~~ld~~l~-----r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~la~~~~G~ 220 (254)
T 1ixz_A 155 IVVMAATNRPDILDPALL-----RPGRFDRQIAIDAPDVKGREQILRIHARGKPL-AEDVD----LALLAKRTPGF 220 (254)
T ss_dssp EEEEEEESCGGGSCGGGG-----STTSSCEEEECCSCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTC
T ss_pred EEEEEccCCchhCCHHHc-----CCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCC-CcccC----HHHHHHHcCCC
Confidence 344556665554321110 00111157888888999888888876532211 11122 23466777765
No 242
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.37 E-value=0.016 Score=63.50 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 037574 194 LPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
...+.++|++|+|||++|+.+++
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999987
No 243
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.36 E-value=0.0075 Score=69.42 Aligned_cols=50 Identities=30% Similarity=0.473 Sum_probs=33.9
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhC
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.+++|-+.....+.+.+.-..-.. .....++.++|++|+||||||+.++.
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~----~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTK----SLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSS----SCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 347888777776654432110000 02356899999999999999999987
No 244
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.35 E-value=0.032 Score=56.43 Aligned_cols=54 Identities=6% Similarity=-0.014 Sum_probs=35.8
Q ss_pred HHHHHhcCCceEEEeecccCCCChhhHHHHHHhcc---CCCCCcEEEEecCCCcccc
Q 037574 265 YINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLK---SGSEGSRILVTRRGEKNGT 318 (961)
Q Consensus 265 ~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~---~~~~gs~ilvTtR~~~v~~ 318 (961)
.+.+.+-.++-+++||+--..-|......+...+. ....|..||++|.+...+.
T Consensus 137 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~ 193 (237)
T 2cbz_A 137 SLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP 193 (237)
T ss_dssp HHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG
T ss_pred HHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH
Confidence 34555666778999999854455666666776663 2234677888887766554
No 245
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.31 E-value=0.013 Score=59.19 Aligned_cols=116 Identities=19% Similarity=0.129 Sum_probs=63.2
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCC-------------------
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVS------------------- 254 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~------------------- 254 (961)
-.+++|+|.+|+|||||++.++.... ..=..++|+.... ....+...+ ..++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEE--SRDSIIRQA-KQFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSS--CHHHHHHHH-HHTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEccc--CHHHHHHHH-HHhcchHHHHhhCCEEEEeccccccCc
Confidence 36899999999999999999986322 1112456666433 344443333 23322110
Q ss_pred ----CcccHHHHHHHHHHHhc-CCce--EEEeecccCCC--ChhhHHHHHHhccC--CCCCcEEEEecCCC
Q 037574 255 ----SQVEMETVLQYINEFVQ-GKKV--LLVLDDVWWNA--CPRYWEQLMYSLKS--GSEGSRILVTRRGE 314 (961)
Q Consensus 255 ----~~~~~~~~~~~l~~~l~-~kr~--LlVlDdvw~~~--~~~~~~~l~~~l~~--~~~gs~ilvTtR~~ 314 (961)
...+.+++...+.+.+. .+.- +||+|....-. +......+...+.. ...|..||++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 11145555555555443 2344 99999984111 33333444443332 12467888887654
No 246
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.30 E-value=0.0041 Score=61.98 Aligned_cols=113 Identities=16% Similarity=0.075 Sum_probs=63.2
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCC--cccHHHHHHHHHHHhc
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSS--QVEMETVLQYINEFVQ 271 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~l~~~l~ 271 (961)
-.++.|+|..|+||||++..+.+. ...+-..++.+...... . ....+++.++..... ....+++.+.+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 468899999999999999998874 33332233444333221 1 112334444332211 1223445555555444
Q ss_pred CCce-EEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCc
Q 037574 272 GKKV-LLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEK 315 (961)
Q Consensus 272 ~kr~-LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 315 (961)
+.++ +||+|.+. .-+.+..+.+..... .|-.||+|-+..+
T Consensus 87 ~~~~dvViIDEaQ-~l~~~~ve~l~~L~~---~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 87 NDETKVIGIDEVQ-FFDDRICEVANILAE---NGFVVIISGLDKN 127 (223)
T ss_dssp CTTCCEEEECSGG-GSCTHHHHHHHHHHH---TTCEEEEECCSBC
T ss_pred CCCCCEEEEecCc-cCcHHHHHHHHHHHh---CCCeEEEEecccc
Confidence 4444 99999996 333445555543333 2678999988544
No 247
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.28 E-value=0.043 Score=66.26 Aligned_cols=166 Identities=14% Similarity=0.153 Sum_probs=86.1
Q ss_pred CccccchHHHHHHHHHHhCCCCCC---cCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDE---ESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEI 239 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~---~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 239 (961)
.+++|.+..++++.+++...-... ..-.......|.|+|++|+||||||+.++.. ....| +.++.+
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~------ 272 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP------ 272 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHH------
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEch------
Confidence 468999988888888765300000 0000133457999999999999999999873 33222 333321
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccCCC------Ch----hhHHHHHHhccCC--CCCcEE
Q 037574 240 RVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWWNA------CP----RYWEQLMYSLKSG--SEGSRI 307 (961)
Q Consensus 240 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~------~~----~~~~~l~~~l~~~--~~gs~i 307 (961)
. +.... .......+...+.......+.++++|++..-. .. .....+...+... ..+..+
T Consensus 273 ~--------l~~~~-~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~v 343 (806)
T 1ypw_A 273 E--------IMSKL-AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp H--------HSSSS-TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEE
T ss_pred H--------hhhhh-hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEE
Confidence 1 11110 01111222333333334567899999993100 01 1122233333321 234456
Q ss_pred EEecCCCc-ccccccccccccCCCCCcceeecCCCChHHHHHHHHHHH
Q 037574 308 LVTRRGEK-NGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIA 354 (961)
Q Consensus 308 lvTtR~~~-v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 354 (961)
|.||.... +...+... ..-...+.+...+.++-.+++...+
T Consensus 344 I~atn~~~~ld~al~r~------gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 344 MAATNRPNSIDPALRRF------GRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEECSCTTTSCTTTTST------TSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred ecccCCchhcCHHHhcc------cccccccccCCCCHHHHHHHHHHHH
Confidence 66665543 22211110 0111457788889999999998765
No 248
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.22 E-value=0.047 Score=61.50 Aligned_cols=185 Identities=14% Similarity=0.134 Sum_probs=91.8
Q ss_pred CCCccccchHHHHHHHHHHh---CCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCC
Q 037574 161 DPLEFHGRNVEKKNILQLLK---GESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRD 237 (961)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~---~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 237 (961)
.-.+++|.+..+.++.+... ....-... +..-.+-+.|+|++|+||||||+.++.. ... ..+.++.+.-..
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~l-g~~ip~GvLL~GppGtGKTtLaraIa~~--~~~---~~i~i~g~~~~~ 102 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEM-GARIPKGVLLVGPPGVGKTHLARAVAGE--ARV---PFITASGSDFVE 102 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTT-SCCCCSEEEEECSSSSSHHHHHHHHHHH--TTC---CEEEEEGGGGTS
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhc-cCCCCceEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEehhHHHH
Confidence 34568999877766655433 21000000 0011234899999999999999999873 322 233444322110
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhc----CCceEEEeecccCCC---------ChhhH----HHHHHhccC
Q 037574 238 EIRVAKAILESLKGSVSSQVEMETVLQYINEFVQ----GKKVLLVLDDVWWNA---------CPRYW----EQLMYSLKS 300 (961)
Q Consensus 238 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~----~kr~LlVlDdvw~~~---------~~~~~----~~l~~~l~~ 300 (961)
... ......+...++ ..+.++++|++..-. ..+.+ ..+...+..
T Consensus 103 --------------~~~-----g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg 163 (499)
T 2dhr_A 103 --------------MFV-----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 163 (499)
T ss_dssp --------------SCT-----THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGG
T ss_pred --------------hhh-----hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcc
Confidence 000 011122233332 235799999994110 01122 233333332
Q ss_pred C--CCCcEEEEecCCCccccc-ccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhc
Q 037574 301 G--SEGSRILVTRRGEKNGTN-MTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKC 377 (961)
Q Consensus 301 ~--~~gs~ilvTtR~~~v~~~-~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c 377 (961)
+ ..+..|+.||..++.... ... .+.-...+.+...+.++-.++++.++-... ..+... ...|++.+
T Consensus 164 ~~~~~~viviAatn~p~~LD~aLlr------~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~-l~~dv~----l~~lA~~t 232 (499)
T 2dhr_A 164 FEKDTAIVVMAATNRPDILDPALLR------PGRFDRQIAIDAPDVKGREQILRIHARGKP-LAEDVD----LALLAKRT 232 (499)
T ss_dssp CCSSCCCEEEECCSCGGGSCTTTSS------TTSSCCEEECCCCCHHHHHHHHHHTTSSSC-CCCSST----THHHHTTS
T ss_pred cccCccEEEEEecCChhhcCccccc------ccccceEEecCCCCHHHHHHHHHHHHhcCC-CChHHH----HHHHHHhc
Confidence 2 234455666666554221 110 011114788888899988898887653211 111122 33467777
Q ss_pred CCch
Q 037574 378 KGLP 381 (961)
Q Consensus 378 ~G~P 381 (961)
.|..
T Consensus 233 ~G~~ 236 (499)
T 2dhr_A 233 PGFV 236 (499)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7765
No 249
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.20 E-value=0.09 Score=54.71 Aligned_cols=189 Identities=15% Similarity=0.136 Sum_probs=88.7
Q ss_pred CCccccchHHHHHHHHHHhCCCCCC---cCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCH
Q 037574 162 PLEFHGRNVEKKNILQLLKGESSDE---ESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDE 238 (961)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~~~~~~---~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 238 (961)
-.+++|.+..+.++.+....-.... +.. -.-.+-+.|+|+.|+||||||+.++.. .. ...+.+...
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~-~~~~~gvll~Gp~GtGKTtl~~~i~~~--~~---~~~i~~~~~----- 107 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMG-ARIPKGVLLVGPPGVGKTHLARAVAGE--AR---VPFITASGS----- 107 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTT-CCCCCEEEEECCTTSSHHHHHHHHHHH--TT---CCEEEEEHH-----
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcC-CCCCCeEEEECCCcChHHHHHHHHHHH--cC---CCEEEecHH-----
Confidence 4468898877666654432110000 000 001123899999999999999999873 32 223333321
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCCceEEEeecccC---CC------ChhhH----HHHHHhccCCC--C
Q 037574 239 IRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDVWW---NA------CPRYW----EQLMYSLKSGS--E 303 (961)
Q Consensus 239 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~---~~------~~~~~----~~l~~~l~~~~--~ 303 (961)
.+ ..... ......+...+...-...+.++|+|++.. .. ....+ ..+...+..+. .
T Consensus 108 -~~----~~~~~-----~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~ 177 (278)
T 1iy2_A 108 -DF----VEMFV-----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 177 (278)
T ss_dssp -HH----HHSTT-----THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTC
T ss_pred -HH----HHHHh-----hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCC
Confidence 11 11100 00011111222222224568999999930 00 01111 22332333322 2
Q ss_pred CcEEEEecCCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCch
Q 037574 304 GSRILVTRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLP 381 (961)
Q Consensus 304 gs~ilvTtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~P 381 (961)
...++.||..+.+....-.. ...-...+.+...+.++-.++++..+-.... ..... ...|++.+.|..
T Consensus 178 ~~i~~a~t~~p~~ld~~l~r-----~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 178 AIVVMAATNRPDILDPALLR-----PGRFDRQIAIDAPDVKGREQILRIHARGKPL-AEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp CEEEEEEESCTTSSCHHHHS-----TTSSCCEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCC
T ss_pred CEEEEEecCCchhCCHhHcC-----CCcCCeEEEeCCcCHHHHHHHHHHHHccCCC-CcccC----HHHHHHHcCCCC
Confidence 23445566655543311000 0011157888888999888888876532111 11122 234667777754
No 250
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.14 E-value=0.03 Score=63.12 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=35.5
Q ss_pred ccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCC
Q 037574 164 EFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
.++|++..++.+...+... .-|.|+|++|+|||+||+.+.+.
T Consensus 23 ~ivGq~~~i~~l~~al~~~------------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG------------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT------------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcC------------CeeEeecCchHHHHHHHHHHHHH
Confidence 4889999998888877642 35889999999999999999883
No 251
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.11 E-value=0.013 Score=62.76 Aligned_cols=84 Identities=25% Similarity=0.320 Sum_probs=56.0
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCC-----CCcccHHHHHHHHH
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSV-----SSQVEMETVLQYIN 267 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l~ 267 (961)
.-.++.|+|++|+||||||.+++... ...=..++|++....++.. .++.++... ....+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~--~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA--QKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 44799999999999999999998742 2222347788877766654 445554432 12234566666666
Q ss_pred HHhc-CCceEEEeeccc
Q 037574 268 EFVQ-GKKVLLVLDDVW 283 (961)
Q Consensus 268 ~~l~-~kr~LlVlDdvw 283 (961)
..++ .+.-++|+|.+-
T Consensus 133 ~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHTSCCSEEEEECTT
T ss_pred HHhhhcCCCeEEehHhh
Confidence 5554 556689999884
No 252
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.08 E-value=0.019 Score=58.46 Aligned_cols=90 Identities=17% Similarity=0.185 Sum_probs=53.2
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhc----cCceeEEEEeCCCCCHHHHHHHHHHHhcCCCC---------CcccH
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKA----NFDKRIWVSASCPRDEIRVAKAILESLKGSVS---------SQVEM 259 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~---------~~~~~ 259 (961)
.-.++.|+|++|+|||||+..++....... .-..++|++....+....+ ..+++.++.... ...+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCH
Confidence 447999999999999999999986311111 1357888887765555443 334445443210 01112
Q ss_pred H---HHHHHHHHHhc-CCceEEEeeccc
Q 037574 260 E---TVLQYINEFVQ-GKKVLLVLDDVW 283 (961)
Q Consensus 260 ~---~~~~~l~~~l~-~kr~LlVlDdvw 283 (961)
+ .....+.+.+. .+.-+||+|.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 2 22333444443 467788899884
No 253
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.07 E-value=0.13 Score=53.18 Aligned_cols=166 Identities=13% Similarity=0.076 Sum_probs=82.3
Q ss_pred CccccchHHHHHHHHHHhCCCCCCc---CCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHH
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEE---SGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEI 239 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 239 (961)
.++.|-++.++.+.+.+...-...+ .-+-.-.+-+.|+|++|+||||||+.++.. ... ..+.+..+.-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~--~~~---~~i~i~g~~l~~~- 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANE--SGL---NFISVKGPELLNM- 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHH--TTC---EEEEEETTTTCSS-
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHH--cCC---CEEEEEcHHHHhh-
Confidence 3577888877777664421100000 000011122999999999999999999873 222 2344443221110
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHh-cCCceEEEeecccCCCC----------hhhHHHHHHhccCCC--CCcE
Q 037574 240 RVAKAILESLKGSVSSQVEMETVLQYINEFV-QGKKVLLVLDDVWWNAC----------PRYWEQLMYSLKSGS--EGSR 306 (961)
Q Consensus 240 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~~~----------~~~~~~l~~~l~~~~--~gs~ 306 (961)
.....+.....+.+.. ...+.++++|++..-.. ......+...+..+. ...-
T Consensus 84 ---------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i 148 (274)
T 2x8a_A 84 ---------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVF 148 (274)
T ss_dssp ---------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEE
T ss_pred ---------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEE
Confidence 0001111122222222 34578999999941000 011223333343322 3445
Q ss_pred EEEecCCCcccccccccccccCCCCCcceeecCCCChHHHHHHHHHHH
Q 037574 307 ILVTRRGEKNGTNMTEIGLGEKDGTNMTEIGLGELSAKECRSLFRQIA 354 (961)
Q Consensus 307 ilvTtR~~~v~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 354 (961)
++.+|..+++....-.. .+.-...+.+...+.++-.++|+...
T Consensus 149 ~ia~tn~p~~LD~al~r-----~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 149 IMAATNRPDIIDPAILR-----PGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEESCGGGSCHHHHS-----TTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEeecCChhhCCHhhcC-----cccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 56677666554322110 01111567888889999999998765
No 254
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.01 E-value=0.031 Score=53.72 Aligned_cols=22 Identities=36% Similarity=0.712 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 037574 196 VIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 255
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.99 E-value=0.068 Score=53.70 Aligned_cols=54 Identities=9% Similarity=-0.056 Sum_probs=35.7
Q ss_pred HHHHHhcCCceEEEeecccCCCChhhHHHHHHh-ccCCCCCcEEEEecCCCcccc
Q 037574 265 YINEFVQGKKVLLVLDDVWWNACPRYWEQLMYS-LKSGSEGSRILVTRRGEKNGT 318 (961)
Q Consensus 265 ~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~-l~~~~~gs~ilvTtR~~~v~~ 318 (961)
.+.+.+-.++-+++||+--..-|...-..+... +.....|..||++|.+...+.
T Consensus 140 ~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~ 194 (229)
T 2pze_A 140 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK 194 (229)
T ss_dssp HHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH
T ss_pred HHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH
Confidence 455566677889999998644566666667664 334334667888887765443
No 256
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.99 E-value=0.073 Score=57.38 Aligned_cols=159 Identities=11% Similarity=-0.022 Sum_probs=100.2
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-Hhc
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYINE-FVQ 271 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~ 271 (961)
-.++..++|..|.||++.++.+.+.. ....|+....+.+....+..++ .+.+.. -+-
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l---------------------~~~~~~~plf 74 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVA-AAQGFEEHHTFSIDPNTDWNAI---------------------FSLCQAMSLF 74 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHH-HHHTCCEEEEEECCTTCCHHHH---------------------HHHHHHHHHC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHH-HhCCCCeeEEEEecCCCCHHHH---------------------HHHhcCcCCc
Confidence 45789999999999999999998732 1234532222233333333332 222221 234
Q ss_pred CCceEEEeecccCC-CChhhHHHHHHhccCCCCCcEEEEecCCCc-------ccccccccccccCCCCCcceeecCCCCh
Q 037574 272 GKKVLLVLDDVWWN-ACPRYWEQLMYSLKSGSEGSRILVTRRGEK-------NGTNMTEIGLGEKDGTNMTEIGLGELSA 343 (961)
Q Consensus 272 ~kr~LlVlDdvw~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-------v~~~~~~~~~~~~~~~~~~~~~l~~L~~ 343 (961)
+++-++|+|++. . -....++.+...+.....++.+|++|.... +...+. .+...++..+++.
T Consensus 75 ~~~kvvii~~~~-~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~---------sr~~~~~~~~l~~ 144 (343)
T 1jr3_D 75 ASRQTLLLLLPE-NGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALA---------NRSVQVTCQTPEQ 144 (343)
T ss_dssp CSCEEEEEECCS-SCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHT---------TTCEEEEECCCCT
T ss_pred cCCeEEEEECCC-CCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHH---------hCceEEEeeCCCH
Confidence 667788999985 3 355778888888877667778777664321 221111 1227889999999
Q ss_pred HHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHH
Q 037574 344 KECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKIL 387 (961)
Q Consensus 344 ~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~ 387 (961)
++....+.+.+-..+. .--.+.+..|++.++|...++...
T Consensus 145 ~~l~~~l~~~~~~~g~----~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 145 AQLPRWVAARAKQLNL----ELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp THHHHHHHHHHHHTTC----EECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC----CCCHHHHHHHHHHhchHHHHHHHH
Confidence 9999888777633221 112346788999999998877653
No 257
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.97 E-value=0.016 Score=55.95 Aligned_cols=120 Identities=17% Similarity=0.122 Sum_probs=63.5
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCC---CCCHHHHHHHHHHHh---cCCC--CCc------ccH
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASC---PRDEIRVAKAILESL---KGSV--SSQ------VEM 259 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~---~~~~~~~~~~il~~l---~~~~--~~~------~~~ 259 (961)
...|.|++..|.||||+|--..- +..++=..+.++.... ......++..+--.+ +... ... ...
T Consensus 28 ~g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 34677777777999999988876 3322222444554332 233334433331000 0000 010 111
Q ss_pred HHHHHHHHHHhcCCc-eEEEeecccC--CCChhhHHHHHHhccCCCCCcEEEEecCCCc
Q 037574 260 ETVLQYINEFVQGKK-VLLVLDDVWW--NACPRYWEQLMYSLKSGSEGSRILVTRRGEK 315 (961)
Q Consensus 260 ~~~~~~l~~~l~~kr-~LlVlDdvw~--~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 315 (961)
.......++.+.+.+ =|||||++-. .-..-..+.+...+........||+|+|...
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 223344445554444 4999999910 0022344566667766666789999999873
No 258
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.89 E-value=0.029 Score=59.94 Aligned_cols=89 Identities=19% Similarity=0.299 Sum_probs=54.7
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhcc----CceeEEEEeCCCCCHHHHHHHHHHHhcCCCC---------CcccH
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKAN----FDKRIWVSASCPRDEIRVAKAILESLKGSVS---------SQVEM 259 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~---------~~~~~ 259 (961)
.-.++.|+|.+|+||||||.+++........ -..++|++....++..++. ++++.++.... ...+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCH
Confidence 4469999999999999999999863211110 2468899988877776654 44555543210 01112
Q ss_pred H---HHHHHHHHHhc--CCceEEEeecc
Q 037574 260 E---TVLQYINEFVQ--GKKVLLVLDDV 282 (961)
Q Consensus 260 ~---~~~~~l~~~l~--~kr~LlVlDdv 282 (961)
+ ++...+.+.++ .+.-+||+|.+
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 2 23444444443 45567888877
No 259
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.88 E-value=0.042 Score=59.13 Aligned_cols=59 Identities=15% Similarity=0.189 Sum_probs=41.0
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhc----cCceeEEEEeCCCCCHHHHHHHHHHHhcC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKA----NFDKRIWVSASCPRDEIRVAKAILESLKG 251 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~il~~l~~ 251 (961)
+.-.++.|+|.+|+||||||.+++....... .-..++|++....++..++. .++..++.
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~ 182 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNV 182 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 3457899999999999999999886422211 22468899988877776554 44455543
No 260
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.78 E-value=0.037 Score=54.88 Aligned_cols=125 Identities=16% Similarity=0.100 Sum_probs=65.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhCChhhh-c--cC---------ceeEEEEeCC----CCCHHH----------------HH
Q 037574 195 PVIWILGKEGIGKTALARQVFDDSDVK-A--NF---------DKRIWVSASC----PRDEIR----------------VA 242 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~-~--~F---------~~~~wv~~s~----~~~~~~----------------~~ 242 (961)
.+++|+|+.|+|||||++.++.-.... + .| ..+.+|.-.. ..++.+ ..
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~ 115 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEI 115 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHH
Confidence 579999999999999999997631100 0 01 1133332111 112222 23
Q ss_pred HHHHHHhcCCCCC----ccc-HHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCcc
Q 037574 243 KAILESLKGSVSS----QVE-METVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEKN 316 (961)
Q Consensus 243 ~~il~~l~~~~~~----~~~-~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v 316 (961)
.++++.++..... .-+ -+.-.-.+...+..++-+++||+--..-|......+...+... ..|..||++|.+...
T Consensus 116 ~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~ 195 (214)
T 1sgw_A 116 MDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS 195 (214)
T ss_dssp HHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCT
T ss_pred HHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 3445555432210 111 1222334555666778899999885444555545555444332 125567777776654
Q ss_pred ccc
Q 037574 317 GTN 319 (961)
Q Consensus 317 ~~~ 319 (961)
+..
T Consensus 196 ~~~ 198 (214)
T 1sgw_A 196 YCD 198 (214)
T ss_dssp TSS
T ss_pred HHH
Confidence 443
No 261
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.73 E-value=0.027 Score=58.55 Aligned_cols=81 Identities=12% Similarity=0.213 Sum_probs=54.3
Q ss_pred EEEEEcCCCchHHHHHHHHhCChhhhcc--CceeEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CcccHHHH-HHHHH
Q 037574 196 VIWILGKEGIGKTALARQVFDDSDVKAN--FDKRIWVSASCPRDEIRVAKAILESLKGSVS-----SQVEMETV-LQYIN 267 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~-~~~l~ 267 (961)
++-|.|++|+||||||.+++.. .... =..++||+....++.. .+++++.+.. ...+.++. ...+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 7899999999999999999874 3222 2468899988777764 3667765432 12345555 33333
Q ss_pred HH--h-cCCceEEEeeccc
Q 037574 268 EF--V-QGKKVLLVLDDVW 283 (961)
Q Consensus 268 ~~--l-~~kr~LlVlDdvw 283 (961)
.. + .++.-+||+|-+.
T Consensus 103 ~l~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HHHTCCTTCCEEEEEECST
T ss_pred HHHHhhccCceEEEEeccc
Confidence 22 2 4567899999884
No 262
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.67 E-value=0.026 Score=60.38 Aligned_cols=89 Identities=17% Similarity=0.188 Sum_probs=55.0
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhc---------cC-----ceeEEEEeCCCCCHHHHHHHHHHHhcCCCC----
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKA---------NF-----DKRIWVSASCPRDEIRVAKAILESLKGSVS---- 254 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~~s~~~~~~~~~~~il~~l~~~~~---- 254 (961)
.-.++.|+|.+|+||||||.+++....... .. ..++|++....++..++. ++++.++....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~-~~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIM-QMAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHH-HHHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhc
Confidence 447899999999999999999986321111 11 468899988877776655 34555543210
Q ss_pred -----CcccHH---HHHHHHHHHhc--CCceEEEeecc
Q 037574 255 -----SQVEME---TVLQYINEFVQ--GKKVLLVLDDV 282 (961)
Q Consensus 255 -----~~~~~~---~~~~~l~~~l~--~kr~LlVlDdv 282 (961)
...+.+ ++...+.+.++ .+.-+||+|.+
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 111222 23444555554 34558888877
No 263
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.64 E-value=0.11 Score=57.29 Aligned_cols=124 Identities=10% Similarity=0.141 Sum_probs=83.5
Q ss_pred CccEEEEEeccCCCCCcccccCCCCccEEEeccCCC-ccccccchhhhccCCcccEEEccCCChhhhhhhcccc-hhhcC
Q 037574 549 KFPHLMITFESDQGAFPNSVYNQKKLRSLGVEHGGG-FMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVP-KQIKR 626 (961)
Q Consensus 549 ~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~-~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~ 626 (961)
.++.+.+... +...-...|.+|.+|+.+.+..+.. ... .+....|..+..|+.+.+..+ +..++ ..+..
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-------~~~I~~~aF~~ 135 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-------VTEIDSEAFHH 135 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-------CSEECTTTTTT
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-------cceehhhhhhh
Confidence 3666666432 2222245789999999999976531 121 334566888899988887765 55554 34678
Q ss_pred CCCcceEeccCCCCcccCC-cchhccCCCcEeecCCCCCCcccccccccCCCCcEEEeCC
Q 037574 627 LIHLRYLNLSKNNKIKKLP-KTLCELYNLQTLELSWCSNLRNLPQGMGKLINLRHVVNVG 685 (961)
Q Consensus 627 l~~Lr~L~L~~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~ 685 (961)
+.+|+.+.+..+ +..++ ..+..+.+|+.+.+..+ +..+......-.+|+.+.+..
T Consensus 136 c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~ 191 (394)
T 4gt6_A 136 CEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPA 191 (394)
T ss_dssp CTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECT
T ss_pred hcccccccccce--eeeecccceecccccccccccce--eeEeccccccccceeEEEECC
Confidence 899999999754 45555 46788899999998753 666665544456788888743
No 264
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.61 E-value=0.059 Score=54.82 Aligned_cols=55 Identities=11% Similarity=0.094 Sum_probs=34.3
Q ss_pred HHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCccccc
Q 037574 265 YINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNGTN 319 (961)
Q Consensus 265 ~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~ 319 (961)
.|.+.+-.++-+|+||+--..-|......+...+.....|..||++|-+...+..
T Consensus 155 ~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~ 209 (247)
T 2ff7_A 155 AIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKN 209 (247)
T ss_dssp HHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTT
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh
Confidence 3445556667799999886445555555555554432236678888877665543
No 265
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.60 E-value=0.066 Score=54.92 Aligned_cols=120 Identities=15% Similarity=0.052 Sum_probs=66.0
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCh-hhhc-cCc-----------eeE-EEEeCCC----CCHH--------------HH
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDS-DVKA-NFD-----------KRI-WVSASCP----RDEI--------------RV 241 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~-~~~~-~F~-----------~~~-wv~~s~~----~~~~--------------~~ 241 (961)
-.+++|+|+.|+|||||.+.++.-. .-.. .|+ .+. ++ .+. .++. +.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~~~~~~i~~~v--~Q~~~l~~tv~enl~~~~~~~~~~~~~ 107 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYSTNL--PEAYEIGVTVNDIVYLYEELKGLDRDL 107 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGCSCCTTEEECC--GGGSCTTSBHHHHHHHHHHHTCCCHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEECcchHHhhheEEEe--CCCCccCCcHHHHHHHhhhhcchHHHH
Confidence 3589999999999999999997531 0000 000 122 22 121 1222 12
Q ss_pred HHHHHHHhcCC-CC-----Cccc-HHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCC
Q 037574 242 AKAILESLKGS-VS-----SQVE-METVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGE 314 (961)
Q Consensus 242 ~~~il~~l~~~-~~-----~~~~-~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 314 (961)
..++++.++.. .. ..-+ -+...-.+.+.+..++-+++||.--..-|...-..+...+..... .||++|.+.
T Consensus 108 ~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~ 185 (263)
T 2pjz_A 108 FLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHEL 185 (263)
T ss_dssp HHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCG
T ss_pred HHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCH
Confidence 33455555443 20 1111 222233455566677889999988644566666666666654433 677777765
Q ss_pred ccc
Q 037574 315 KNG 317 (961)
Q Consensus 315 ~v~ 317 (961)
..+
T Consensus 186 ~~~ 188 (263)
T 2pjz_A 186 DML 188 (263)
T ss_dssp GGG
T ss_pred HHH
Confidence 543
No 266
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.60 E-value=0.032 Score=60.02 Aligned_cols=84 Identities=24% Similarity=0.231 Sum_probs=55.3
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHH
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVS-----SQVEMETVLQYIN 267 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 267 (961)
.-.++.|+|.+|+||||||.+++.. ....=..++|++....++.. .++.++.... ...+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 4579999999999999999999863 22222467899988766653 2444543321 1234555555555
Q ss_pred HHhc-CCceEEEeeccc
Q 037574 268 EFVQ-GKKVLLVLDDVW 283 (961)
Q Consensus 268 ~~l~-~kr~LlVlDdvw 283 (961)
...+ .+.-+||+|.+-
T Consensus 133 ~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHTTTCCSEEEEECGG
T ss_pred HHHhcCCCCEEEEcChH
Confidence 5543 456799999884
No 267
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.58 E-value=0.012 Score=57.98 Aligned_cols=42 Identities=21% Similarity=0.109 Sum_probs=33.7
Q ss_pred chHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhC
Q 037574 168 RNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 168 r~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
|++.++.+.+.+..... ....+|+|+|..|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~-------~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKT-------AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCC-------SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-------CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 56677888888775432 4457999999999999999999976
No 268
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.48 E-value=0.038 Score=59.71 Aligned_cols=84 Identities=23% Similarity=0.235 Sum_probs=56.2
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCC-----CCcccHHHHHHHHH
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSV-----SSQVEMETVLQYIN 267 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l~ 267 (961)
.-.++.|.|.+|+||||||.++.... ...=..++|++....++.. .++.++... ....+.+++...+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 44689999999999999999998742 2222468899988776654 244444321 11234566666666
Q ss_pred HHhc-CCceEEEeeccc
Q 037574 268 EFVQ-GKKVLLVLDDVW 283 (961)
Q Consensus 268 ~~l~-~kr~LlVlDdvw 283 (961)
...+ +..-+||+|.+-
T Consensus 146 ~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHTTTCCSEEEEECTT
T ss_pred HHHhcCCCCEEEEeChH
Confidence 6554 445689999883
No 269
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.41 E-value=0.04 Score=59.33 Aligned_cols=84 Identities=23% Similarity=0.262 Sum_probs=54.2
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHH
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVS-----SQVEMETVLQYIN 267 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 267 (961)
.-.++.|.|.+|+||||||.+++... ...=..++|++....++.. .++.++.... ...+.+++...+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~--~~~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 45799999999999999999998742 2222368899987777643 2444543221 1123455555554
Q ss_pred HHhc-CCceEEEeeccc
Q 037574 268 EFVQ-GKKVLLVLDDVW 283 (961)
Q Consensus 268 ~~l~-~kr~LlVlDdvw 283 (961)
...+ ++.-+||+|.+-
T Consensus 135 ~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHTCCSEEEEECGG
T ss_pred HHHhccCCCEEEEcCHH
Confidence 4442 455689999884
No 270
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.35 E-value=0.084 Score=54.54 Aligned_cols=55 Identities=16% Similarity=0.065 Sum_probs=33.9
Q ss_pred HHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC--CCCcEEEEecCCCcccc
Q 037574 264 QYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG--SEGSRILVTRRGEKNGT 318 (961)
Q Consensus 264 ~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~ 318 (961)
-.|.+.+..++=+|+||.--..-|...-..+...+... ..|..||++|-+...+.
T Consensus 152 v~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~ 208 (275)
T 3gfo_A 152 VAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVP 208 (275)
T ss_dssp HHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGG
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH
Confidence 34556667788899999885334555555555555432 22667777777665444
No 271
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.33 E-value=0.045 Score=57.35 Aligned_cols=87 Identities=16% Similarity=0.134 Sum_probs=46.2
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCC-CCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhc
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASC-PRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQ 271 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 271 (961)
...+++|+|.+|+||||++..+.......... .+..+.... .....+.+....+..+.......+...+...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-KIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-CEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-EEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-
Confidence 45799999999999999999998632211121 344454332 1223333333333333222112233444444443 3
Q ss_pred CCceEEEeecc
Q 037574 272 GKKVLLVLDDV 282 (961)
Q Consensus 272 ~kr~LlVlDdv 282 (961)
.+.=++|+|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 34457888854
No 272
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.28 E-value=0.017 Score=61.67 Aligned_cols=95 Identities=17% Similarity=0.179 Sum_probs=52.7
Q ss_pred HHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhc-cCc-eeEEEEeCCCCCHHHHHHHHHHHhcC
Q 037574 174 NILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKA-NFD-KRIWVSASCPRDEIRVAKAILESLKG 251 (961)
Q Consensus 174 ~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~F~-~~~wv~~s~~~~~~~~~~~il~~l~~ 251 (961)
++++.+..- ..-..++|+|..|+|||||++.+.+. +.. +=+ .++++-+.+..... .++.+.+..
T Consensus 163 raID~~~pi---------~rGQr~~IvG~sG~GKTtLl~~Iar~--i~~~~~~v~~I~~lIGER~~Ev---~~~~~~~~~ 228 (422)
T 3ice_A 163 RVLDLASPI---------GRGQRGLIVAPPKAGKTMLLQNIAQS--IAYNHPDCVLMVLLIDERPEEV---TEMQRLVKG 228 (422)
T ss_dssp HHHHHHSCC---------BTTCEEEEECCSSSSHHHHHHHHHHH--HHHHCTTSEEEEEEESSCHHHH---HHHHTTCSS
T ss_pred eeeeeeeee---------cCCcEEEEecCCCCChhHHHHHHHHH--HhhcCCCeeEEEEEecCChHHH---HHHHHHhCe
Confidence 456666553 33468999999999999999998873 322 112 23456666554222 233333321
Q ss_pred ----CCCCcccHHH-----HHHHHHHHh--cCCceEEEeecc
Q 037574 252 ----SVSSQVEMET-----VLQYINEFV--QGKKVLLVLDDV 282 (961)
Q Consensus 252 ----~~~~~~~~~~-----~~~~l~~~l--~~kr~LlVlDdv 282 (961)
...+...... ..-.+.+++ +|+.+||++||+
T Consensus 229 ~vV~atadep~~~r~~~a~~alt~AEyfrd~G~dVLil~Dsl 270 (422)
T 3ice_A 229 EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSI 270 (422)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCc
Confidence 1111111111 111122233 589999999999
No 273
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.24 E-value=0.079 Score=54.12 Aligned_cols=54 Identities=20% Similarity=0.092 Sum_probs=33.7
Q ss_pred HHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCcccc
Q 037574 265 YINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEKNGT 318 (961)
Q Consensus 265 ~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~ 318 (961)
.|.+.+..++-+++||.--..-|...-..+...+... ..|..||++|.+...+.
T Consensus 156 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~ 210 (256)
T 1vpl_A 156 LIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVE 210 (256)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHT
T ss_pred HHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH
Confidence 4555666778899999885444555555555544432 23667888887755433
No 274
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.23 E-value=0.12 Score=53.28 Aligned_cols=54 Identities=11% Similarity=0.094 Sum_probs=34.7
Q ss_pred HHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCcccc
Q 037574 265 YINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEKNGT 318 (961)
Q Consensus 265 ~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~ 318 (961)
.|.+.+..++-+++||.--..-|...-..+...+... ..|..||++|.+...+.
T Consensus 148 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~ 202 (266)
T 2yz2_A 148 AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVI 202 (266)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTG
T ss_pred HHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 4555666778899999885445555555565555432 13667888887766544
No 275
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.10 E-value=0.074 Score=55.98 Aligned_cols=38 Identities=21% Similarity=0.146 Sum_probs=27.3
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCc-eeEEEEe
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFD-KRIWVSA 232 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~ 232 (961)
.-.+++|+|.+|+|||||+..++... ...-. .++|+..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~--~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW--GTAMGKKVGLAML 72 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH--HHTSCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH--HHHcCCeEEEEeC
Confidence 34689999999999999999998742 22222 4556654
No 276
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.05 E-value=0.35 Score=49.67 Aligned_cols=55 Identities=9% Similarity=-0.069 Sum_probs=37.0
Q ss_pred HHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCccccc
Q 037574 265 YINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEKNGTN 319 (961)
Q Consensus 265 ~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~~ 319 (961)
.|.+.+..++-+|+||.--..-|...-+.+...+... ..|..||++|.+...+..
T Consensus 174 ~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~ 229 (267)
T 2zu0_C 174 DILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDY 229 (267)
T ss_dssp HHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGT
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHh
Confidence 3455566677899999886445666666666666543 347788888887665543
No 277
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.02 E-value=0.12 Score=61.30 Aligned_cols=102 Identities=20% Similarity=0.248 Sum_probs=58.8
Q ss_pred CCCccccchHHHHHHHHHHhCCCCCCc---CCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCC
Q 037574 161 DPLEFHGRNVEKKNILQLLKGESSDEE---SGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRD 237 (961)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~~~~~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 237 (961)
.-.++.|-++.++.+.+.+.-.-...+ ..+....+-|.++|++|.|||.||+.+++. .... ++.++
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e--~~~~-----f~~v~---- 543 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIK---- 543 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT--TTCE-----EEECC----
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH--hCCc-----eEEec----
Confidence 344677888888888776654321110 011133456789999999999999999984 3322 24433
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh-cCCceEEEeeccc
Q 037574 238 EIRVAKAILESLKGSVSSQVEMETVLQYINEFV-QGKKVLLVLDDVW 283 (961)
Q Consensus 238 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw 283 (961)
.. +++....+. + +..++.+.+.. +..+++|++|++.
T Consensus 544 ~~----~l~s~~vGe-----s-e~~vr~lF~~Ar~~~P~IifiDEiD 580 (806)
T 3cf2_A 544 GP----ELLTMWFGE-----S-EANVREIFDKARQAAPCVLFFDELD 580 (806)
T ss_dssp HH----HHHTTTCSS-----C-HHHHHHHHHHHHTTCSEEEECSCGG
T ss_pred cc----hhhccccch-----H-HHHHHHHHHHHHHcCCceeechhhh
Confidence 11 222222111 1 22333333333 4678999999994
No 278
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.98 E-value=0.18 Score=51.67 Aligned_cols=53 Identities=4% Similarity=0.016 Sum_probs=32.5
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCcccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNGT 318 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 318 (961)
|.+.+-.++-+++||+--..-|...-..+...+.....|..||++|.+...+.
T Consensus 166 lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~ 218 (260)
T 2ghi_A 166 IARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS 218 (260)
T ss_dssp HHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH
Confidence 44455566779999988544455555555555443223567888887766544
No 279
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.96 E-value=0.17 Score=52.18 Aligned_cols=54 Identities=13% Similarity=0.036 Sum_probs=35.6
Q ss_pred HHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCC--CCcEEEEecCCCcccc
Q 037574 265 YINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGS--EGSRILVTRRGEKNGT 318 (961)
Q Consensus 265 ~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~--~gs~ilvTtR~~~v~~ 318 (961)
.|.+.|-.++-+|+||+--..-|...-..+...+.... .|..||++|.+...+.
T Consensus 166 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~ 221 (271)
T 2ixe_A 166 ALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAE 221 (271)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHT
T ss_pred HHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH
Confidence 35556667788999998854455666666666665432 3677888887765544
No 280
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.94 E-value=0.034 Score=57.07 Aligned_cols=25 Identities=28% Similarity=0.326 Sum_probs=22.3
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
....+|.|+|++|+||||+|+.+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999999976
No 281
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.92 E-value=0.17 Score=51.52 Aligned_cols=54 Identities=11% Similarity=-0.051 Sum_probs=34.1
Q ss_pred HHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC-CCCcEEEEecCCCccccc
Q 037574 266 INEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG-SEGSRILVTRRGEKNGTN 319 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~~ 319 (961)
|.+.+..++-+|+||.--..-|......+...+... ..|..||++|.+...+..
T Consensus 154 iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~ 208 (250)
T 2d2e_A 154 ILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNY 208 (250)
T ss_dssp HHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGT
T ss_pred HHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH
Confidence 445555667799999885444555555555555432 246678888877665543
No 282
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.88 E-value=0.076 Score=53.94 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 037574 194 LPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
-.+++|+|+.|+|||||++.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999965
No 283
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.88 E-value=0.21 Score=52.03 Aligned_cols=54 Identities=9% Similarity=-0.056 Sum_probs=35.5
Q ss_pred HHHHHhcCCceEEEeecccCCCChhhHHHHHHh-ccCCCCCcEEEEecCCCcccc
Q 037574 265 YINEFVQGKKVLLVLDDVWWNACPRYWEQLMYS-LKSGSEGSRILVTRRGEKNGT 318 (961)
Q Consensus 265 ~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~-l~~~~~gs~ilvTtR~~~v~~ 318 (961)
.|.+.+..++-+++||+--..-|...-..+... +.....|..||++|.+...+.
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~ 223 (290)
T 2bbs_A 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK 223 (290)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH
T ss_pred HHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH
Confidence 455566677889999988644566666667664 333334667888887765443
No 284
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.79 E-value=0.19 Score=49.33 Aligned_cols=25 Identities=28% Similarity=0.573 Sum_probs=22.3
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
....+|+|.|+.|+||||+|+.+.+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999999976
No 285
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.75 E-value=0.16 Score=52.29 Aligned_cols=125 Identities=11% Similarity=0.051 Sum_probs=66.4
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhh-c--cC--------------ceeEEEEeC----CCC----------------
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVK-A--NF--------------DKRIWVSAS----CPR---------------- 236 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~--~F--------------~~~~wv~~s----~~~---------------- 236 (961)
-.+++|+|+.|+|||||++.+..-.... + .| ..+.++.-. ...
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 116 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGS 116 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCST
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcH
Confidence 3689999999999999999997521100 0 00 012222110 011
Q ss_pred CHHHHHHHHHHHhcCCCC-----CcccHHH-HHHHHHHHhcC------CceEEEeecccCCCChhhHHHHHHhccCC--C
Q 037574 237 DEIRVAKAILESLKGSVS-----SQVEMET-VLQYINEFVQG------KKVLLVLDDVWWNACPRYWEQLMYSLKSG--S 302 (961)
Q Consensus 237 ~~~~~~~~il~~l~~~~~-----~~~~~~~-~~~~l~~~l~~------kr~LlVlDdvw~~~~~~~~~~l~~~l~~~--~ 302 (961)
...+...++++.++.... ..-+..+ -.-.|.+.+.. ++-+|+||.--..-|...-..+...+... .
T Consensus 117 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~ 196 (266)
T 4g1u_C 117 QDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ 196 (266)
T ss_dssp THHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHc
Confidence 123344556666654321 1112222 22334555555 78899999885344555555555555432 2
Q ss_pred CCcEEEEecCCCcccc
Q 037574 303 EGSRILVTRRGEKNGT 318 (961)
Q Consensus 303 ~gs~ilvTtR~~~v~~ 318 (961)
.|..||++|.+...+.
T Consensus 197 ~~~tvi~vtHdl~~~~ 212 (266)
T 4g1u_C 197 EPLAVCCVLHDLNLAA 212 (266)
T ss_dssp SSEEEEEECSCHHHHH
T ss_pred CCCEEEEEEcCHHHHH
Confidence 3456778887765443
No 286
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.70 E-value=0.12 Score=52.79 Aligned_cols=123 Identities=15% Similarity=0.155 Sum_probs=65.6
Q ss_pred cEEEEEcCCCchHHHHHHHHhCChhh-hcc---CceeEEEEeCC----CCCHH----------------------HHHHH
Q 037574 195 PVIWILGKEGIGKTALARQVFDDSDV-KAN---FDKRIWVSASC----PRDEI----------------------RVAKA 244 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~---F~~~~wv~~s~----~~~~~----------------------~~~~~ 244 (961)
.+++|+|+.|+|||||.+.++.-... .+. ...+.+|.-.. ..++. +...+
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~ 111 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQ 111 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHH
Confidence 58999999999999999999763211 010 01223332100 11111 22334
Q ss_pred HHHHhcCCC-----CCccc-HHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC--CCCcEEEEecCCCcc
Q 037574 245 ILESLKGSV-----SSQVE-METVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG--SEGSRILVTRRGEKN 316 (961)
Q Consensus 245 il~~l~~~~-----~~~~~-~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v 316 (961)
+++.++... ...-+ -+.-.-.|.+.+..++=+++||.--..-|...-..+...+... ..|..||++|.+...
T Consensus 112 ~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~ 191 (253)
T 2nq2_C 112 ALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ 191 (253)
T ss_dssp HHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHH
T ss_pred HHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 444443321 01111 1222333555566778899999886445555555555555432 226678888877654
Q ss_pred c
Q 037574 317 G 317 (961)
Q Consensus 317 ~ 317 (961)
+
T Consensus 192 ~ 192 (253)
T 2nq2_C 192 V 192 (253)
T ss_dssp H
T ss_pred H
Confidence 3
No 287
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.67 E-value=0.069 Score=56.35 Aligned_cols=100 Identities=11% Similarity=0.083 Sum_probs=53.6
Q ss_pred cccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccC--ceeEEEEeCCCCCHHHHH
Q 037574 165 FHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANF--DKRIWVSASCPRDEIRVA 242 (961)
Q Consensus 165 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~ 242 (961)
++|....+..+...+...... ....+|+|.|..|+|||||++.+.. ...... ..+..++....+-.....
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~------~~p~iigI~GpsGSGKSTl~~~L~~--ll~~~~~~~~v~~i~~D~f~~~~~~l 140 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEP------KVPYIIGIAGSVAVGKSTTSRVLKA--LLSRWPDHPNVEVITTDGFLYSNAKL 140 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCC------CCCEEEEEECCTTSSHHHHHHHHHH--HHTTSTTCCCEEEEEGGGGBCCHHHH
T ss_pred hhcchHHHHHHHHHHhccCCC------CCCEEEEEECCCCCCHHHHHHHHHH--HhcccCCCCeEEEEeecccccchhhh
Confidence 345555555555555443211 4567999999999999999999866 222111 124445543322111111
Q ss_pred HHHHHHh-cCCCCCcccHHHHHHHHHHHhcCC
Q 037574 243 KAILESL-KGSVSSQVEMETVLQYINEFVQGK 273 (961)
Q Consensus 243 ~~il~~l-~~~~~~~~~~~~~~~~l~~~l~~k 273 (961)
... ... ....+...+.+.+.+.+.....++
T Consensus 141 ~~~-~~~~~~g~P~~~D~~~l~~~L~~L~~g~ 171 (321)
T 3tqc_A 141 EKQ-GLMKRKGFPESYDMPSLLRVLNAIKSGQ 171 (321)
T ss_dssp HHT-TCGGGTTSGGGBCHHHHHHHHHHHHTTC
T ss_pred hhH-HHHhhccCcccccHHHHHHHHHhhhccc
Confidence 110 000 112244566777777777766665
No 288
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.66 E-value=0.023 Score=56.31 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=28.6
Q ss_pred HHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhC
Q 037574 171 EKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 171 ~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
-.++|.+.+.... ....+|+|+|+.|+|||||++.+..
T Consensus 7 ~~~~~~~~~~~~~--------~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPRQ--------PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTTC--------CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--------CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4455556555421 4457999999999999999999987
No 289
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.54 E-value=0.11 Score=55.23 Aligned_cols=53 Identities=17% Similarity=0.127 Sum_probs=38.6
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHh
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESL 249 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l 249 (961)
.-.++.|.|.+|+||||+|.+++.+....+ ..++|++.. .+...+...++...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 346899999999999999999986432222 567787755 45677777776654
No 290
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.50 E-value=0.23 Score=52.09 Aligned_cols=89 Identities=16% Similarity=0.150 Sum_probs=48.3
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHH--HHHHHHHHHhcCCC---CCcccHHH-HHHH
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEI--RVAKAILESLKGSV---SSQVEMET-VLQY 265 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~--~~~~~il~~l~~~~---~~~~~~~~-~~~~ 265 (961)
....+++|+|.+|+||||++..++.. ....=..+.++... .+... +-+...++.++... ....+... ....
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHH--HHhcCCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 34679999999999999999999873 32221234444433 33322 22233444433221 11112222 2334
Q ss_pred HHHHhcCCceEEEeeccc
Q 037574 266 INEFVQGKKVLLVLDDVW 283 (961)
Q Consensus 266 l~~~l~~kr~LlVlDdvw 283 (961)
+...+..+.-++|+|-.-
T Consensus 179 l~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 179 VAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHHTTCSEEEEEECC
T ss_pred HHHHHhcCCCEEEEECCC
Confidence 555455555588889773
No 291
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.48 E-value=0.11 Score=52.13 Aligned_cols=56 Identities=21% Similarity=0.272 Sum_probs=35.2
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhh---hc-cCceeEEEEeCCCCCHHHHHHHHHHHh
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDV---KA-NFDKRIWVSASCPRDEIRVAKAILESL 249 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~-~F~~~~wv~~s~~~~~~~~~~~il~~l 249 (961)
.-.+++|+|+.|+|||||++.++..... .. .-...+|+.....+.... +..+.+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~ 83 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNR 83 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHc
Confidence 3479999999999999999999752111 11 134578887655444333 33444443
No 292
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.32 E-value=0.16 Score=54.54 Aligned_cols=91 Identities=18% Similarity=0.205 Sum_probs=53.2
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccC----ceeEEEEeCCCCCHHHHHHHHHHHhcCCC------------CC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANF----DKRIWVSASCPRDEIRVAKAILESLKGSV------------SS 255 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~~s~~~~~~~~~~~il~~l~~~~------------~~ 255 (961)
+.-.++.|+|+.|+|||||+..++......... ..++|++....+...++ ..+++..+... ..
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCC
Confidence 345799999999999999999998632111111 23588887665544333 33444433211 01
Q ss_pred cccHHHHHHHHHHHhc------CCceEEEeeccc
Q 037574 256 QVEMETVLQYINEFVQ------GKKVLLVLDDVW 283 (961)
Q Consensus 256 ~~~~~~~~~~l~~~l~------~kr~LlVlDdvw 283 (961)
.....++...+...+. .+.-+||+|.+-
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~t 241 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 241 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSS
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCch
Confidence 1122334444555553 467799999884
No 293
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.28 E-value=0.19 Score=52.35 Aligned_cols=81 Identities=15% Similarity=0.144 Sum_probs=43.3
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhc-cCceeEEEEeCCCCCHHHHHHHHHHHh------cC-CCCCcccHHHHH
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKA-NFDKRIWVSASCPRDEIRVAKAILESL------KG-SVSSQVEMETVL 263 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~~s~~~~~~~~~~~il~~l------~~-~~~~~~~~~~~~ 263 (961)
....+|+|+|..|+||||||+.+........ ....+..|+....+-.......+.... .. ..+...+.+.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 4567999999999999999999877322111 122344445443322233333333221 10 113445556666
Q ss_pred HHHHHHhcC
Q 037574 264 QYINEFVQG 272 (961)
Q Consensus 264 ~~l~~~l~~ 272 (961)
+.+.....+
T Consensus 109 ~~l~~l~~g 117 (290)
T 1odf_A 109 EVLNTIFNN 117 (290)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHhhcc
Confidence 655554444
No 294
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.27 E-value=0.01 Score=57.44 Aligned_cols=23 Identities=22% Similarity=0.073 Sum_probs=19.6
Q ss_pred cEEEEEcCCCchHHHHHHHHhCC
Q 037574 195 PVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
.++.|+|+.|+||||++..+...
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999777653
No 295
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.21 E-value=0.11 Score=56.68 Aligned_cols=90 Identities=14% Similarity=0.210 Sum_probs=51.8
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhh----hccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCC---------CcccH
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDV----KANFDKRIWVSASCPRDEIRVAKAILESLKGSVS---------SQVEM 259 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~---------~~~~~ 259 (961)
.-.++.|+|.+|+|||||+..++-.... ...-..++|++....+...++ +.+++.++.... ...+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCCh
Confidence 4579999999999999999977521111 112346888887766665543 345565543210 01111
Q ss_pred ---HHHHHHHHHHh-cCCceEEEeeccc
Q 037574 260 ---ETVLQYINEFV-QGKKVLLVLDDVW 283 (961)
Q Consensus 260 ---~~~~~~l~~~l-~~kr~LlVlDdvw 283 (961)
.+....+.+.+ ..+.-+||+|.+-
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchh
Confidence 12223333333 3456788889873
No 296
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.20 E-value=0.13 Score=55.05 Aligned_cols=57 Identities=16% Similarity=0.040 Sum_probs=36.7
Q ss_pred HHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC--CCCcEEEEecCCCccccc
Q 037574 263 LQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG--SEGSRILVTRRGEKNGTN 319 (961)
Q Consensus 263 ~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~~ 319 (961)
.-.|.+.|..++-+|++|.--..-|...-..+...+... ..|..||++|-+..++..
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~ 229 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKR 229 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence 334666777888899999885344555555555555432 236778888877665443
No 297
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.20 E-value=0.096 Score=57.81 Aligned_cols=86 Identities=17% Similarity=0.306 Sum_probs=49.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhCChhhhccC-ceeEEEEeCCCCC-HHHHHHHHHHHhc--------CCCCCcccHHH---
Q 037574 195 PVIWILGKEGIGKTALARQVFDDSDVKANF-DKRIWVSASCPRD-EIRVAKAILESLK--------GSVSSQVEMET--- 261 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~-~~~~~~~il~~l~--------~~~~~~~~~~~--- 261 (961)
..++|+|..|+|||||+..+..+ ....+ +..+++.+.+..+ ..+++.++.+.=. ....+......
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~--~~~~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~ 229 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHN--IAQEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVA 229 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHH--HHHHTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhh--hhhccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHH
Confidence 46899999999999999999874 33222 4556677766543 3344444433200 00111111111
Q ss_pred -HHHHHHHHh---cCCceEEEeecc
Q 037574 262 -VLQYINEFV---QGKKVLLVLDDV 282 (961)
Q Consensus 262 -~~~~l~~~l---~~kr~LlVlDdv 282 (961)
..-.+.+++ +++++||++||+
T Consensus 230 ~~~ltiAEyFrd~~G~~VLl~~D~i 254 (473)
T 1sky_E 230 LTGLTMAEYFRDEQGQDGLLFIDNI 254 (473)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEEECT
T ss_pred HHHHHHHHHHHHhcCCcEEEEeccH
Confidence 111233333 589999999999
No 298
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.19 E-value=0.16 Score=54.19 Aligned_cols=52 Identities=15% Similarity=0.176 Sum_probs=35.0
Q ss_pred HHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhc-cCce-eEEEEeCCC
Q 037574 173 KNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKA-NFDK-RIWVSASCP 235 (961)
Q Consensus 173 ~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~-~~wv~~s~~ 235 (961)
-++++.+..- ++-..++|+|..|+|||+|++.+.+. +.. +=+. ++++-+.+.
T Consensus 163 iraID~l~Pi---------grGQR~lIfg~~g~GKT~Ll~~Ia~~--i~~~~~dv~~V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPI---------GKGQRGMIVAPPKAGKTTILKEIANG--IAENHPDTIRIILLIDER 216 (427)
T ss_dssp HHHHHHHSCC---------BTTCEEEEEECTTCCHHHHHHHHHHH--HHHHCTTSEEEEEECSCC
T ss_pred chhhhhcccc---------cCCceEEEecCCCCChhHHHHHHHHH--HhhcCCCeEEEEEEeccC
Confidence 4567777653 34467899999999999999999883 322 2232 345666654
No 299
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.13 E-value=1.1 Score=50.04 Aligned_cols=52 Identities=17% Similarity=0.212 Sum_probs=35.6
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHH
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILE 247 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~ 247 (961)
.-.++.|.|.+|+||||||..++.+..... =..++|++... +...+...++.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~~~ 253 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRMLC 253 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHHHH
Confidence 346899999999999999999987432221 12577776543 45566666554
No 300
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.04 E-value=0.025 Score=54.14 Aligned_cols=20 Identities=40% Similarity=0.615 Sum_probs=18.9
Q ss_pred cEEEEEcCCCchHHHHHHHH
Q 037574 195 PVIWILGKEGIGKTALARQV 214 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v 214 (961)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 301
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.01 E-value=0.024 Score=54.50 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=20.6
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 037574 195 PVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.+|.|+|++|+||||+|+.+.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 302
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.97 E-value=0.2 Score=49.20 Aligned_cols=87 Identities=16% Similarity=0.207 Sum_probs=48.9
Q ss_pred EEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhc---C------CCCCcccHHHHHHHH
Q 037574 196 VIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLK---G------SVSSQVEMETVLQYI 266 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~---~------~~~~~~~~~~~~~~l 266 (961)
+|.|.|++|+||+|.|+.+.+. |. ...++ ..+++++-+..-+ . ......+.+-+...+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~------~g-~~~is------tGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv 68 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE------KG-FVHIS------TGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALI 68 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH------HC-CEEEE------HHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH------HC-CeEEc------HHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHH
Confidence 5789999999999999999872 21 22343 2344443322210 0 001223344556667
Q ss_pred HHHhcCCceEEEeecccCCCChhhHHHHHHhc
Q 037574 267 NEFVQGKKVLLVLDDVWWNACPRYWEQLMYSL 298 (961)
Q Consensus 267 ~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l 298 (961)
.+.+..... +|||.. ..+..+.+.+...+
T Consensus 69 ~~~l~~~~~-~ilDGf--PRt~~Qa~~l~~~l 97 (206)
T 3sr0_A 69 EEVFPKHGN-VIFDGF--PRTVKQAEALDEML 97 (206)
T ss_dssp HHHCCSSSC-EEEESC--CCSHHHHHHHHHHH
T ss_pred HHhhccCCc-eEecCC--chhHHHHHHHHhhH
Confidence 777755443 688988 34445555554444
No 303
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.96 E-value=0.043 Score=59.73 Aligned_cols=53 Identities=25% Similarity=0.313 Sum_probs=35.5
Q ss_pred ccccchHHHHHHHHHHhCC-----CCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhC
Q 037574 164 EFHGRNVEKKNILQLLKGE-----SSDEESGSKPTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~-----~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.++|.+..++.+...+... ..............+.++|++|+|||++|+.+++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3689988888888777200 0000000002345688999999999999999988
No 304
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.94 E-value=0.51 Score=51.87 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCchHHHHHHHHhC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
...+|.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 468999999999999999988875
No 305
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.93 E-value=0.16 Score=54.26 Aligned_cols=124 Identities=16% Similarity=0.058 Sum_probs=67.0
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhh-c--cCc------------eeEEEEeC----CCCCHH---------------
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVK-A--NFD------------KRIWVSAS----CPRDEI--------------- 239 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~--~F~------------~~~wv~~s----~~~~~~--------------- 239 (961)
-.+++|+|+.|+|||||.+.++.-.... + .|+ .+.+|.-. ...++.
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~ 105 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP 105 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCH
T ss_pred CCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHH
Confidence 3589999999999999999997531110 0 011 12222110 011221
Q ss_pred HHHHHHHHHhcCCCC-----Cccc-HHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC--CCCcEEEEec
Q 037574 240 RVAKAILESLKGSVS-----SQVE-METVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG--SEGSRILVTR 311 (961)
Q Consensus 240 ~~~~~il~~l~~~~~-----~~~~-~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~--~~gs~ilvTt 311 (961)
+-..++++.++.... ..-+ -+.-.-.|.+.+-.++-+|+||.--..-|...-..+...+... ..|..||++|
T Consensus 106 ~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vT 185 (348)
T 3d31_A 106 KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHIT 185 (348)
T ss_dssp HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 223345555544321 1112 2223334666777788899999875444555555555555432 2356777777
Q ss_pred CCCccc
Q 037574 312 RGEKNG 317 (961)
Q Consensus 312 R~~~v~ 317 (961)
.+...+
T Consensus 186 Hd~~~~ 191 (348)
T 3d31_A 186 HDQTEA 191 (348)
T ss_dssp SCHHHH
T ss_pred CCHHHH
Confidence 775543
No 306
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.91 E-value=0.19 Score=52.50 Aligned_cols=87 Identities=18% Similarity=0.119 Sum_probs=46.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCC-CCHHHHHHHHHHHhcCCC---CCcccHHHHHHHHHHH
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCP-RDEIRVAKAILESLKGSV---SSQVEMETVLQYINEF 269 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~il~~l~~~~---~~~~~~~~~~~~l~~~ 269 (961)
..+++++|.+|+||||++..++.. ....=..+.++..... ....+.++...+..+... ....+..++.....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 679999999999999999999873 2222223555554322 222333344444443321 1122334443333333
Q ss_pred hc-CCceEEEeecc
Q 037574 270 VQ-GKKVLLVLDDV 282 (961)
Q Consensus 270 l~-~kr~LlVlDdv 282 (961)
++ ..-=++|+|-.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 43 33337888876
No 307
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.91 E-value=1.3 Score=49.39 Aligned_cols=54 Identities=17% Similarity=0.074 Sum_probs=37.5
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHh
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESL 249 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l 249 (961)
.-.++.|.|.+|+||||+|..++.+.... .=..++|++.. .+...+...++...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCSE 252 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHHH
Confidence 34689999999999999999998743221 11357777654 45667777766544
No 308
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.90 E-value=0.03 Score=54.49 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
...+++|+|+.|+|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999873
No 309
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.90 E-value=0.12 Score=55.35 Aligned_cols=125 Identities=10% Similarity=0.083 Sum_probs=67.0
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhh-c--cC------------ceeEEEEeC----CCCCHH---------------
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVK-A--NF------------DKRIWVSAS----CPRDEI--------------- 239 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~--~F------------~~~~wv~~s----~~~~~~--------------- 239 (961)
-.+++|+|+.|+|||||.+.++.-.... + .| ..+.+|.-. ...++.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~ 120 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKD 120 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHH
Confidence 3589999999999999999997521100 0 00 112233210 011221
Q ss_pred ---HHHHHHHHHhcCCC-----CCccc-HHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC--CCCcEEE
Q 037574 240 ---RVAKAILESLKGSV-----SSQVE-METVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG--SEGSRIL 308 (961)
Q Consensus 240 ---~~~~~il~~l~~~~-----~~~~~-~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~--~~gs~il 308 (961)
+...++++.++... ...-+ -+.-.-.|.+.|-.++-+|+||.--..-|...-..+...+... ..|..||
T Consensus 121 ~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi 200 (355)
T 1z47_A 121 EMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSV 200 (355)
T ss_dssp HHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 22334455544321 11112 2223334666677788899999875444555555555554432 1256788
Q ss_pred EecCCCcccc
Q 037574 309 VTRRGEKNGT 318 (961)
Q Consensus 309 vTtR~~~v~~ 318 (961)
++|.+...+.
T Consensus 201 ~vTHd~~~a~ 210 (355)
T 1z47_A 201 FVTHDQEEAL 210 (355)
T ss_dssp EECSCHHHHH
T ss_pred EECCCHHHHH
Confidence 8887765443
No 310
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.85 E-value=0.027 Score=53.73 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=20.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 037574 195 PVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.+|.|.|+.|+||||+|+.+.+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999976
No 311
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.81 E-value=0.2 Score=53.15 Aligned_cols=53 Identities=17% Similarity=0.076 Sum_probs=38.2
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLK 250 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~ 250 (961)
-.++.|.|.+|+||||+|..++.+... .=..++|++. ..+...+...++....
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDLT 98 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHhh
Confidence 468999999999999999999875322 2235666664 4567777777776654
No 312
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.76 E-value=0.03 Score=55.03 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 037574 194 LPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
..+|.|+|+.|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 313
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.71 E-value=0.63 Score=62.82 Aligned_cols=145 Identities=14% Similarity=0.107 Sum_probs=77.8
Q ss_pred cEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCC-CcccHHHHHHHHHHHhcCC
Q 037574 195 PVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVS-SQVEMETVLQYINEFVQGK 273 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~-~~~~~~~~~~~l~~~l~~k 273 (961)
+-|.++|++|+|||++|+.+.... ..+ ..+.++.+...+...+++.+-..+..... ...-. .-.-.++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~-------~P~~~gk 1336 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTL-------LPKSDIK 1336 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEE-------EEBSSSS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCccc-------cCCCCCc
Confidence 468899999999999997776531 122 34567777777776666655554432110 00000 0001467
Q ss_pred ceEEEeecccCCCC------hhhHHHHHHhccCCC-----CC-------cEEEEecCCCcccccccccccccCCCCCcce
Q 037574 274 KVLLVLDDVWWNAC------PRYWEQLMYSLKSGS-----EG-------SRILVTRRGEKNGTNMTEIGLGEKDGTNMTE 335 (961)
Q Consensus 274 r~LlVlDdvw~~~~------~~~~~~l~~~l~~~~-----~g-------s~ilvTtR~~~v~~~~~~~~~~~~~~~~~~~ 335 (961)
++++++||+. -.. ....+.++..+..++ .+ ..+|.++....- .+...+...-.+++..
T Consensus 1337 ~~VlFiDEin-mp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~---gGR~~l~~rllRrf~v 1412 (2695)
T 4akg_A 1337 NLVLFCDEIN-LPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTD---PGRIPMSERFTRHAAI 1412 (2695)
T ss_dssp CEEEEEETTT-CSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTS---TTCCCCCHHHHTTEEE
T ss_pred eEEEEecccc-cccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCcc---CCCccCChhhhheeeE
Confidence 8999999973 111 135566666654322 11 223333322110 0000111111223467
Q ss_pred eecCCCChHHHHHHHHHHH
Q 037574 336 IGLGELSAKECRSLFRQIA 354 (961)
Q Consensus 336 ~~l~~L~~~~~~~Lf~~~~ 354 (961)
+.+...+.++-..+|....
T Consensus 1413 i~i~~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1413 LYLGYPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp EECCCCTTTHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHH
Confidence 8888888888888887664
No 314
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.70 E-value=0.15 Score=51.81 Aligned_cols=40 Identities=23% Similarity=0.241 Sum_probs=28.7
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASC 234 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 234 (961)
.-.++.|.|.+|+||||||.+++.. ....=..++|++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccC
Confidence 3468999999999999999888763 222223577777544
No 315
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.69 E-value=0.16 Score=53.15 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCchHHHHHHHHhC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.-.+++|+|+.|+|||||++.+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 346899999999999999999975
No 316
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.67 E-value=0.038 Score=53.24 Aligned_cols=23 Identities=17% Similarity=0.498 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 037574 194 LPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
-.+++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999976
No 317
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.65 E-value=0.22 Score=54.75 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 037574 194 LPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
..++.|+|.+|+||||++..++.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 318
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.52 E-value=0.059 Score=56.29 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=22.2
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
....+|.|.|++|+||||+|+.+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999976
No 319
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.48 E-value=0.17 Score=55.91 Aligned_cols=89 Identities=18% Similarity=0.211 Sum_probs=55.9
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCC-CHHHHHHHHHHHhcCC-------C-------CCcc
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPR-DEIRVAKAILESLKGS-------V-------SSQV 257 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~il~~l~~~-------~-------~~~~ 257 (961)
+-..++|+|..|+|||+|++.+.+.. .+.+-+.++++-+.+.. ...++..++.+.=... . .+..
T Consensus 164 kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p 242 (498)
T 1fx0_B 164 RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEP 242 (498)
T ss_dssp TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSC
T ss_pred cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCC
Confidence 34578999999999999999998731 12345778888888766 4455666665531111 0 1111
Q ss_pred c-----HHHHHHHHHHHh---cCCceEEEeecc
Q 037574 258 E-----METVLQYINEFV---QGKKVLLVLDDV 282 (961)
Q Consensus 258 ~-----~~~~~~~l~~~l---~~kr~LlVlDdv 282 (961)
. .....-.+.+++ +++.+||++||+
T Consensus 243 ~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 243 PGARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp HHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 1 112223344444 468999999999
No 320
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.46 E-value=0.033 Score=53.56 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=20.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 037574 195 PVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999976
No 321
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.44 E-value=0.032 Score=53.28 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=20.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 037574 195 PVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.+|+|+|+.|+|||||++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999977
No 322
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.44 E-value=0.24 Score=54.46 Aligned_cols=65 Identities=20% Similarity=0.297 Sum_probs=44.6
Q ss_pred HHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCC-CHHHHHHHHHHH
Q 037574 174 NILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPR-DEIRVAKAILES 248 (961)
Q Consensus 174 ~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~il~~ 248 (961)
++++.|..- .+-..++|+|..|+|||+|++.+.+.. .+.+-+.++++-+.+.. ...++.+++.+.
T Consensus 142 r~ID~l~pi---------gkGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPY---------AKGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCE---------ETTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEeccccc---------ccCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 456666543 344679999999999999999998731 12344667788887765 445566666654
No 323
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.42 E-value=0.24 Score=53.25 Aligned_cols=124 Identities=15% Similarity=0.060 Sum_probs=66.0
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhh-c--cC------------ceeEEEEeCC----CCCHH---------------
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVK-A--NF------------DKRIWVSASC----PRDEI--------------- 239 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~--~F------------~~~~wv~~s~----~~~~~--------------- 239 (961)
-.+++|+|+.|+|||||.+.++.-.... + .| ..+.+|.-.. ..++.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~ 108 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPRE 108 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHH
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHH
Confidence 3689999999999999999997531100 0 00 1123332110 11111
Q ss_pred ---HHHHHHHHHhcCCCC-----Cccc-HHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC--CCCcEEE
Q 037574 240 ---RVAKAILESLKGSVS-----SQVE-METVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG--SEGSRIL 308 (961)
Q Consensus 240 ---~~~~~il~~l~~~~~-----~~~~-~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~--~~gs~il 308 (961)
+...++++.++.... ..-+ -+.-.-.|.+.+-.++-+|+||.--..-|...-..+...+... ..|..||
T Consensus 109 ~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi 188 (362)
T 2it1_A 109 EIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTV 188 (362)
T ss_dssp HHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 123345555544321 1122 2223334666777788899999875334555445555554432 1256677
Q ss_pred EecCCCccc
Q 037574 309 VTRRGEKNG 317 (961)
Q Consensus 309 vTtR~~~v~ 317 (961)
++|.+...+
T Consensus 189 ~vTHd~~~a 197 (362)
T 2it1_A 189 YVTHDQAEA 197 (362)
T ss_dssp EEESCHHHH
T ss_pred EECCCHHHH
Confidence 777765543
No 324
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.34 E-value=0.037 Score=53.57 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 037574 194 LPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.+.|.|+|+.|+||||+|+.+.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999987
No 325
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.33 E-value=0.19 Score=55.57 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.7
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
...++|.|+|.+|+||||++..+...
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34689999999999999999999873
No 326
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.31 E-value=0.23 Score=53.97 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=33.7
Q ss_pred HHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCccccc
Q 037574 265 YINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNGTN 319 (961)
Q Consensus 265 ~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~ 319 (961)
.|.+.|-.++-+|+||.--..-|...-..+...+.....+..||++|.+.+....
T Consensus 165 alARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~ 219 (390)
T 3gd7_A 165 CLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLE 219 (390)
T ss_dssp HHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTT
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHh
Confidence 4556666777888999763233444455555555554456677777776654443
No 327
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.30 E-value=0.046 Score=53.72 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCchHHHHHHHHhC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
...+|+|+|+.|+|||||++.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 328
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.28 E-value=0.3 Score=51.81 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=22.5
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
....+++|+|+.|+||||+++.+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999987
No 329
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.23 E-value=0.038 Score=59.49 Aligned_cols=111 Identities=9% Similarity=0.130 Sum_probs=62.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHH-HHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCC
Q 037574 195 PVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIR-VAKAILESLKGSVSSQVEMETVLQYINEFVQGK 273 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~-~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 273 (961)
.+++|+|+.|+|||||.+.+... +.......+. .+.++..... -...++.+.... ... ......+...|...
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i~-t~ed~~e~~~~~~~~~v~q~~~~-~~~---~~~~~~La~aL~~~ 196 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHIL-TIEDPIEFVHESKKCLVNQREVH-RDT---LGFSEALRSALRED 196 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEEE-EEESSCCSCCCCSSSEEEEEEBT-TTB---SCHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEEE-EccCcHHhhhhccccceeeeeec-ccc---CCHHHHHHHHhhhC
Confidence 49999999999999999998762 2222122222 2222111000 000000000000 011 12344778888889
Q ss_pred ceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCcccc
Q 037574 274 KVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNGT 318 (961)
Q Consensus 274 r~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 318 (961)
+=+|++|+.- +.+.++.+..... .|..||+||-..+.+.
T Consensus 197 PdvillDEp~---d~e~~~~~~~~~~---~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 197 PDIILVGEMR---DLETIRLALTAAE---TGHLVFGTLHTTSAAK 235 (356)
T ss_dssp CSEEEESCCC---SHHHHHHHHHHHH---TTCEEEEEESCSSHHH
T ss_pred cCEEecCCCC---CHHHHHHHHHHHh---cCCEEEEEEccChHHH
Confidence 9999999994 5666666555433 3556888887766553
No 330
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.16 E-value=0.048 Score=53.58 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCchHHHHHHHHhC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
...+|+|+|+.|+|||||++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999987
No 331
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.15 E-value=0.21 Score=53.87 Aligned_cols=125 Identities=13% Similarity=0.083 Sum_probs=65.8
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhh-c--cC------------ceeEEEEeC----CCCCHH---------------
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVK-A--NF------------DKRIWVSAS----CPRDEI--------------- 239 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~--~F------------~~~~wv~~s----~~~~~~--------------- 239 (961)
-.+++|+|+.|.|||||.+.+..-.... + .| ..+.+|.-. ...++.
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~ 108 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKE 108 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHH
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHH
Confidence 3589999999999999999997521100 0 00 112222100 011111
Q ss_pred ---HHHHHHHHHhcCCC-----CCccc-HHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC--CCCcEEE
Q 037574 240 ---RVAKAILESLKGSV-----SSQVE-METVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG--SEGSRIL 308 (961)
Q Consensus 240 ---~~~~~il~~l~~~~-----~~~~~-~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~--~~gs~il 308 (961)
+...++++.++... ...-+ -+.-.-.|.+.|..++-+|+||.--..-|...-..+...+... ..|..||
T Consensus 109 ~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii 188 (381)
T 3rlf_A 109 VINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMI 188 (381)
T ss_dssp HHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 22344555544321 11112 2222334555666677899999875444555555555555432 2366778
Q ss_pred EecCCCcccc
Q 037574 309 VTRRGEKNGT 318 (961)
Q Consensus 309 vTtR~~~v~~ 318 (961)
++|-+...+.
T Consensus 189 ~vTHd~~ea~ 198 (381)
T 3rlf_A 189 YVTHDQVEAM 198 (381)
T ss_dssp EECSCHHHHH
T ss_pred EEECCHHHHH
Confidence 7777765443
No 332
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.15 E-value=0.061 Score=57.06 Aligned_cols=45 Identities=22% Similarity=0.374 Sum_probs=31.3
Q ss_pred ccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhC
Q 037574 166 HGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 166 vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
|+-+.-.+.+++.+...-.. +....|.|+|+.|+||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i~~------g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIED------NYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTT------CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcc------CCeeEEEEECCCCCcHHHHHHHHHH
Confidence 34445556666665432211 4456799999999999999999987
No 333
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.13 E-value=0.22 Score=56.02 Aligned_cols=107 Identities=14% Similarity=0.131 Sum_probs=55.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhCChhhhccC-ceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHH-------
Q 037574 195 PVIWILGKEGIGKTALARQVFDDSDVKANF-DKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYI------- 266 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l------- 266 (961)
+.+.|.|.+|+||||++..+... ....- ..++.+. ... .....|.+.++.. ..+...+...-
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~--l~~~~~~~il~~a-~T~----~Aa~~l~~~~~~~---~~T~h~~~~~~~~~~~~~ 115 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEA--LISTGETGIILAA-PTH----AAKKILSKLSGKE---ASTIHSILKINPVTYEEN 115 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH--HHHTTCCCEEEEE-SSH----HHHHHHHHHHSSC---EEEHHHHHTEEEEECSSC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHH--HHhcCCceEEEec-CcH----HHHHHHHhhhccc---hhhHHHHhccCccccccc
Confidence 38999999999999999999874 32222 2333333 211 1122222222211 11111110000
Q ss_pred -----H-HHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCc
Q 037574 267 -----N-EFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEK 315 (961)
Q Consensus 267 -----~-~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 315 (961)
. .....+--+||+|++. ..+...+..+...++ .+.+|++.--..+
T Consensus 116 ~~~~~~~~~~~~~~~~iiiDE~~-~~~~~~~~~l~~~~~---~~~~~~~vGD~~Q 166 (459)
T 3upu_A 116 VLFEQKEVPDLAKCRVLICDEVS-MYDRKLFKILLSTIP---PWCTIIGIGDNKQ 166 (459)
T ss_dssp EEEEECSCCCCSSCSEEEESCGG-GCCHHHHHHHHHHSC---TTCEEEEEECTTS
T ss_pred chhcccccccccCCCEEEEECch-hCCHHHHHHHHHhcc---CCCEEEEECCHHH
Confidence 0 0000133589999996 445666777776665 4667877765444
No 334
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.09 E-value=0.039 Score=53.21 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=19.6
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 037574 195 PVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
+.|.|+|+.|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3488999999999999999876
No 335
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.09 E-value=0.041 Score=54.15 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 037574 194 LPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
..+|+|.|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999977
No 336
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.98 E-value=0.045 Score=52.25 Aligned_cols=23 Identities=30% Similarity=0.725 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 037574 194 LPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
-.+++|+|+.|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999997554
No 337
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.97 E-value=0.055 Score=53.28 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 037574 194 LPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
-.+++|+|+.|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 35899999999999999999976
No 338
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.96 E-value=0.059 Score=51.53 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCchHHHHHHHHhC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
...+|+|+|+.|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999976
No 339
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.93 E-value=0.6 Score=51.30 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
...+|.++|.+|+||||++..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999863
No 340
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.91 E-value=0.048 Score=53.10 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCchHHHHHHHHhC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
...+|.|.|++|+||||+|+.+.+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999976
No 341
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.88 E-value=0.051 Score=52.29 Aligned_cols=24 Identities=38% Similarity=0.703 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCchHHHHHHHHhC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
..++|.|+|++|+||||+|+.+.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 346789999999999999999986
No 342
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.86 E-value=0.059 Score=53.31 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
...+|+|+|+.|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3468999999999999999999873
No 343
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.86 E-value=0.06 Score=52.08 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCchHHHHHHHHhC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
...+|+|+|+.|+||||+++.+.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999977
No 344
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.78 E-value=0.24 Score=53.07 Aligned_cols=125 Identities=13% Similarity=0.040 Sum_probs=66.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhh-c--cC------------ceeEEEEeCC----CCCHH---------------
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVK-A--NF------------DKRIWVSASC----PRDEI--------------- 239 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~--~F------------~~~~wv~~s~----~~~~~--------------- 239 (961)
-.+++|+|+.|+|||||.+.++.-.... + .| ..+.+|.-.. ..++.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~ 108 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKD 108 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHH
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHH
Confidence 3589999999999999999997521100 0 00 1122332100 01111
Q ss_pred ---HHHHHHHHHhcCCC-----CCccc-HHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC--CCCcEEE
Q 037574 240 ---RVAKAILESLKGSV-----SSQVE-METVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG--SEGSRIL 308 (961)
Q Consensus 240 ---~~~~~il~~l~~~~-----~~~~~-~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~--~~gs~il 308 (961)
+-..++++.++... ...-+ -+.-.-.|.+.+-.++-+|+||.--..-|...-..+...+... ..|..||
T Consensus 109 ~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi 188 (359)
T 2yyz_A 109 EVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSV 188 (359)
T ss_dssp HTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 22345555554321 11122 2223334666777788899999875444555545555544432 1256677
Q ss_pred EecCCCcccc
Q 037574 309 VTRRGEKNGT 318 (961)
Q Consensus 309 vTtR~~~v~~ 318 (961)
++|.+...+.
T Consensus 189 ~vTHd~~~~~ 198 (359)
T 2yyz_A 189 YVTHDQAEAM 198 (359)
T ss_dssp EEESCHHHHH
T ss_pred EEcCCHHHHH
Confidence 7777765443
No 345
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.77 E-value=0.047 Score=52.92 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=20.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 037574 195 PVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 346
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.74 E-value=0.76 Score=48.49 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=22.5
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
....+++|+|.+|+||||++..++.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999987
No 347
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.74 E-value=0.069 Score=52.74 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=22.3
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
....+|+|+|+.|+||||+|+.+..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999987
No 348
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.73 E-value=0.052 Score=51.56 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.0
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
....+|+|.|+.|+||||+|+.+..
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHH
T ss_pred cccceEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999977
No 349
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.67 E-value=0.064 Score=50.63 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCchHHHHHHHHhC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
..++++|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 350
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.67 E-value=0.17 Score=56.00 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=22.7
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
....+|.|+|++|+||||+|+.+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999987
No 351
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.63 E-value=0.066 Score=52.79 Aligned_cols=24 Identities=29% Similarity=0.630 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCC
Q 037574 194 LPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
..+++|+|+.|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999763
No 352
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.63 E-value=0.057 Score=52.44 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=20.1
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 037574 195 PVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 353
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.62 E-value=0.049 Score=53.01 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=20.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 037574 195 PVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.+|.|.|+.|+||||+|+.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 354
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.60 E-value=0.06 Score=53.36 Aligned_cols=24 Identities=38% Similarity=0.336 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCchHHHHHHHHhC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
...+|+|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999977
No 355
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.59 E-value=0.051 Score=58.76 Aligned_cols=44 Identities=18% Similarity=0.265 Sum_probs=32.3
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhC
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
..++|.+..+..+...+... ...-+.|+|.+|+|||+||+.+.+
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~----------~~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDP----------GIGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCG----------GGCCEEEECCGGGCTTHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCC----------CCceEEEECCCCccHHHHHHHHHH
Confidence 35899988666654444331 122388999999999999999987
No 356
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.59 E-value=0.054 Score=52.65 Aligned_cols=22 Identities=27% Similarity=0.521 Sum_probs=20.6
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 037574 195 PVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.+|.|.|+.|+||||+|+.+.+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 357
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.58 E-value=0.051 Score=53.61 Aligned_cols=24 Identities=29% Similarity=0.677 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCchHHHHHHHHhC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
...+|.|+|+.|+|||||++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999976
No 358
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.57 E-value=0.046 Score=52.36 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=20.1
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 037574 195 PVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.+|.|.|++|+||||+|+.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999987
No 359
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.48 E-value=0.059 Score=52.96 Aligned_cols=25 Identities=28% Similarity=0.301 Sum_probs=22.7
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.+..+|+|+|+.|+||||+|+.+.+
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999987
No 360
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.48 E-value=0.37 Score=50.34 Aligned_cols=86 Identities=16% Similarity=0.162 Sum_probs=44.8
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHH--HHHHHHHHhcCCCC---CcccHHHHHH-HHH
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIR--VAKAILESLKGSVS---SQVEMETVLQ-YIN 267 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~--~~~~il~~l~~~~~---~~~~~~~~~~-~l~ 267 (961)
..+++|+|.+|+||||++..++.- ....=..+.++... ...... .+....+..+.... ...+..++.. .+.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~--~~~~~~~v~l~~~d-~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY--YKGKGRRPLLVAAD-TQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH--HHHTTCCEEEEECC-SSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEecCC-cccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 368999999999999999999873 32221234444432 222221 22333444332211 1123333433 333
Q ss_pred HHhcCCceEEEeecc
Q 037574 268 EFVQGKKVLLVLDDV 282 (961)
Q Consensus 268 ~~l~~kr~LlVlDdv 282 (961)
.....+.=++|+|--
T Consensus 175 ~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHTCCEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 333344557888866
No 361
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.44 E-value=0.085 Score=55.43 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCchHHHHHHHHhC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
...+++|+|++|+|||||++.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999999986
No 362
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.43 E-value=0.064 Score=52.35 Aligned_cols=24 Identities=21% Similarity=0.522 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCchHHHHHHHHhC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
...+|+|.|+.|+||||+|+.+.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999976
No 363
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.42 E-value=0.07 Score=52.83 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=22.9
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
...+||.|.|++|+||||.|+.+.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 5678999999999999999999987
No 364
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.35 E-value=0.067 Score=52.77 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=20.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 037574 195 PVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 365
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.34 E-value=0.057 Score=52.93 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=20.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 037574 195 PVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999976
No 366
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.32 E-value=0.057 Score=55.29 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=20.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 037574 195 PVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.+|.|.|+.|+||||||+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999976
No 367
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.31 E-value=0.22 Score=64.64 Aligned_cols=84 Identities=25% Similarity=0.302 Sum_probs=56.6
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCC-----CCcccHHHHHHHH
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSV-----SSQVEMETVLQYI 266 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l 266 (961)
.+.+++.|+|++|+|||+||.++..... .+=..++|+++...++... ++.++.+. ....+.++..+.+
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~--~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 4567999999999999999999987432 2223577888887776655 44554221 1122344555556
Q ss_pred HHHh-cCCceEEEeecc
Q 037574 267 NEFV-QGKKVLLVLDDV 282 (961)
Q Consensus 267 ~~~l-~~kr~LlVlDdv 282 (961)
++.. ..+.-+||+|.+
T Consensus 1498 ~~lvr~~~~~lVVIDsi 1514 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSV 1514 (2050)
T ss_dssp HHHHHHTCCSEEEESCG
T ss_pred HHHHhcCCCCEEEEcCh
Confidence 5554 357789999999
No 368
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.29 E-value=0.049 Score=52.64 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=20.1
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 037574 195 PVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.+|.|+|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999977
No 369
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.29 E-value=0.068 Score=52.62 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=20.1
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 037574 195 PVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999976
No 370
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.26 E-value=0.06 Score=52.93 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 037574 196 VIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.|+|.|+.|+||||+++.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999987
No 371
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.20 E-value=0.075 Score=54.15 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 037574 194 LPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
..+|+|+|+.|+|||||++.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 372
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.20 E-value=0.079 Score=52.02 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=21.9
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
....+|.|.|+.|+||||+|+.+.+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3446899999999999999999977
No 373
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.18 E-value=0.071 Score=56.31 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.+.+||+|.|-||+||||.+..+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHH
Confidence 4678999999999999999888865
No 374
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.17 E-value=0.086 Score=51.01 Aligned_cols=25 Identities=36% Similarity=0.583 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
...+|.|.|++|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 375
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.17 E-value=0.064 Score=52.28 Aligned_cols=22 Identities=27% Similarity=0.617 Sum_probs=20.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 037574 195 PVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.+|+|.|+.|+||||+|+.+.+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 376
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.15 E-value=0.066 Score=54.82 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
....+|+|.|+.|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999976
No 377
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.15 E-value=0.3 Score=54.25 Aligned_cols=43 Identities=21% Similarity=0.277 Sum_probs=30.3
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRD 237 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 237 (961)
....+++|+|..|+|||||++.+..- .. .-.+.+++.....+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgl--l~-~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQ--FE-QQGKSVMLAAGDTFR 333 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHH--HH-HTTCCEEEECCCTTC
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHH--hh-hcCCeEEEecCcccc
Confidence 34579999999999999999999873 32 224556665444444
No 378
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.15 E-value=0.21 Score=44.85 Aligned_cols=33 Identities=33% Similarity=0.302 Sum_probs=15.4
Q ss_pred CcceEeccCCCCcccCCc-chhccCCCcEeecCCC
Q 037574 629 HLRYLNLSKNNKIKKLPK-TLCELYNLQTLELSWC 662 (961)
Q Consensus 629 ~Lr~L~L~~~~~i~~lp~-~i~~L~~L~~L~l~~~ 662 (961)
+|++|+|++|. ++.+|. .+..+.+|++|+|++|
T Consensus 32 ~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNN-LTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCc-CCccChhhhhhccccCEEEecCC
Confidence 34555555554 444442 2344444444444444
No 379
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.14 E-value=0.07 Score=53.52 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=20.6
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 037574 195 PVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999976
No 380
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.04 E-value=0.2 Score=49.62 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 037574 194 LPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
..+|+|.|+.|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 381
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.02 E-value=0.16 Score=50.15 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=20.6
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 037574 195 PVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.+|.|.|+.|+||||+|+.+.+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 382
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.01 E-value=0.079 Score=52.34 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCchHHHHHHHHhC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.-.+++|+|+.|+|||||++.+..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999999976
No 383
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.01 E-value=0.12 Score=51.80 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=22.8
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
....+|+|+|.+|+|||||+..+...
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 45688999999999999999999874
No 384
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.99 E-value=0.39 Score=51.47 Aligned_cols=125 Identities=18% Similarity=0.112 Sum_probs=67.4
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhh-c--cC-----------------ceeEEEEeCC----CCCH-----------
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVK-A--NF-----------------DKRIWVSASC----PRDE----------- 238 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~--~F-----------------~~~~wv~~s~----~~~~----------- 238 (961)
-.+++|+|+.|+|||||.+.++.-.... + .| ..+.+|.-.. ..++
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 110 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM 110 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999997521100 0 00 1123332110 0011
Q ss_pred -------HHHHHHHHHHhcCCC-----CCccc-HHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC--CC
Q 037574 239 -------IRVAKAILESLKGSV-----SSQVE-METVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG--SE 303 (961)
Q Consensus 239 -------~~~~~~il~~l~~~~-----~~~~~-~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~--~~ 303 (961)
.+...++++.++... ...-+ -+.-.-.|.+.|..++-+|+||.--..-|...-..+...+... ..
T Consensus 111 ~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~ 190 (353)
T 1oxx_K 111 KMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL 190 (353)
T ss_dssp SCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc
Confidence 123445555554321 11122 2223334666777788899999875444555555555554432 12
Q ss_pred CcEEEEecCCCcccc
Q 037574 304 GSRILVTRRGEKNGT 318 (961)
Q Consensus 304 gs~ilvTtR~~~v~~ 318 (961)
|..||++|.+...+.
T Consensus 191 g~tvi~vTHd~~~~~ 205 (353)
T 1oxx_K 191 GVTLLVVSHDPADIF 205 (353)
T ss_dssp CCEEEEEESCHHHHH
T ss_pred CCEEEEEeCCHHHHH
Confidence 566777777765443
No 385
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.98 E-value=0.07 Score=54.89 Aligned_cols=23 Identities=22% Similarity=0.551 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 037574 194 LPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 386
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.98 E-value=0.097 Score=50.84 Aligned_cols=24 Identities=13% Similarity=0.484 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCchHHHHHHHHhC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
..++++|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999999999986
No 387
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.94 E-value=0.084 Score=49.41 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 037574 194 LPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
-.+++|+|+.|.|||||++.++.
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 388
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.91 E-value=0.062 Score=51.22 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=20.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 037574 195 PVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.+|.|.|+.|+||||+|+.+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999977
No 389
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.89 E-value=0.086 Score=51.22 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCchHHHHHHHHhC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
...+|+|.|+.|+||||+|+.+.+
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999976
No 390
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.88 E-value=0.055 Score=52.16 Aligned_cols=24 Identities=42% Similarity=0.791 Sum_probs=17.1
Q ss_pred CccEEEEEcCCCchHHHHHHHHhC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
...+|.|.|+.|+||||+|+.+.+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999976
No 391
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.83 E-value=0.34 Score=47.15 Aligned_cols=50 Identities=18% Similarity=0.127 Sum_probs=31.0
Q ss_pred EEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHH
Q 037574 196 VIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILE 247 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~ 247 (961)
.|+|-|..|+||||.++.+.+ ..+..-..+++..-.......+.++.++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCcHHHHHHHHhh
Confidence 367889999999999999988 44433333444443333334444444443
No 392
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.82 E-value=0.077 Score=51.91 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 037574 194 LPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
..+|+|.|+.|+||||+|+.+.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 393
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.82 E-value=0.074 Score=51.42 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 037574 195 PVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
..|+|.|+.|+||||+|+.+.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 394
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.82 E-value=0.57 Score=54.33 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 037574 194 LPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
-.+++|+|+.|.|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999975
No 395
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.81 E-value=0.18 Score=45.29 Aligned_cols=54 Identities=22% Similarity=0.351 Sum_probs=40.8
Q ss_pred eEeccCCCCcc--cCCcchhccCCCcEeecCCCCCCcccccc-cccCCCCcEEEeCCcccc
Q 037574 632 YLNLSKNNKIK--KLPKTLCELYNLQTLELSWCSNLRNLPQG-MGKLINLRHVVNVGTPLS 689 (961)
Q Consensus 632 ~L~L~~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~l~ 689 (961)
.++-+++. ++ .+|..+ -.+|++|+|++|. +..+|.+ +..+++|+.|+|.+|.+.
T Consensus 12 ~v~Cs~~~-L~~~~vP~~l--p~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRG-LTWASLPTAF--PVDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSC-CCTTTSCSCC--CTTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCC-CccccCCCCC--CcCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCee
Confidence 56666666 76 777643 3478999999887 8888865 567889999999887654
No 396
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.80 E-value=0.1 Score=52.92 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCchHHHHHHHHhC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
...+|+|.|++|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999976
No 397
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=91.78 E-value=0.58 Score=54.24 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 037574 194 LPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
-.+++|+|+.|+|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 36899999999999999999975
No 398
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.77 E-value=0.21 Score=48.65 Aligned_cols=21 Identities=24% Similarity=0.329 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 037574 196 VIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.|+|.|+.|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 399
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.74 E-value=0.088 Score=55.57 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.4
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
....+|+|+|..|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4457999999999999999999977
No 400
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.70 E-value=0.075 Score=50.51 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhCC
Q 037574 195 PVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
++++|+|..|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999873
No 401
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.64 E-value=0.081 Score=50.13 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 037574 196 VIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999977
No 402
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.57 E-value=0.084 Score=51.28 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.3
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
....+|+|+|+.|+||||+|+.+.+
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999976
No 403
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.56 E-value=0.098 Score=53.23 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCchHHHHHHHHhC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
...+|+|.|+.|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 404
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.53 E-value=0.086 Score=52.55 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 037574 194 LPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
-.+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999976
No 405
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.53 E-value=0.1 Score=53.33 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 037574 194 LPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
..+|+|+|+.|+||||+++.+.+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 406
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=91.50 E-value=0.75 Score=50.03 Aligned_cols=122 Identities=15% Similarity=0.209 Sum_probs=58.8
Q ss_pred ccCCCCccEEEeccCCCccccccchhhhccCCcccEEEccCCChhhhhhhcccc-hhhcCCCCcceEeccCCCCcccCC-
Q 037574 568 VYNQKKLRSLGVEHGGGFMNGIVLSKVFDQLTCLRTLELSNHDNVLCKVIKKVP-KQIKRLIHLRYLNLSKNNKIKKLP- 645 (961)
Q Consensus 568 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~i~~lp- 645 (961)
+..+.+|..+.+...- . .+....|..+..|+.+.+..+ +..+. ..+..+.+|+.+.+..+ ++.++
T Consensus 213 f~~~~~l~~i~~~~~~---~-~i~~~~f~~~~~L~~i~lp~~-------v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~ 279 (379)
T 4h09_A 213 FSYGKNLKKITITSGV---T-TLGDGAFYGMKALDEIAIPKN-------VTSIGSFLLQNCTALKTLNFYAK--VKTVPY 279 (379)
T ss_dssp TTTCSSCSEEECCTTC---C-EECTTTTTTCSSCCEEEECTT-------CCEECTTTTTTCTTCCEEEECCC--CSEECT
T ss_pred cccccccceeeeccce---e-EEccccccCCccceEEEcCCC-------ccEeCccccceeehhcccccccc--ceeccc
Confidence 3444555555544321 1 122334555666666666544 33332 23455556666666432 44444
Q ss_pred cchhccCCCcEeecCCCCCCccccc-ccccCCCCcEEEeCCcccccCCcC-CCCCCCCCcC
Q 037574 646 KTLCELYNLQTLELSWCSNLRNLPQ-GMGKLINLRHVVNVGTPLSYMPKG-IERWSCLRTL 704 (961)
Q Consensus 646 ~~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~l~~~p~~-i~~L~~L~~L 704 (961)
..+..+.+|+.+.+.++. +..++. .+.++.+|+.+.+..+ +..++.. +.++++|+.+
T Consensus 280 ~aF~~c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i 338 (379)
T 4h09_A 280 LLCSGCSNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTI 338 (379)
T ss_dssp TTTTTCTTCCEEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCC
T ss_pred cccccccccccccccccc-cceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEE
Confidence 345566666666665443 555543 3455666666665322 3333322 3444444443
No 407
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.43 E-value=0.094 Score=52.33 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 037574 194 LPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
...|.|.|+.|+||||+|+.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999977
No 408
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.42 E-value=0.29 Score=54.15 Aligned_cols=86 Identities=21% Similarity=0.245 Sum_probs=49.9
Q ss_pred CccEEEEEcCCCchHHHHH-HHHhCChhhhccCc-eeEEEEeCCCC-CHHHHHHHHHHHhcCC-------CCCcccHHH-
Q 037574 193 TLPVIWILGKEGIGKTALA-RQVFDDSDVKANFD-KRIWVSASCPR-DEIRVAKAILESLKGS-------VSSQVEMET- 261 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~s~~~-~~~~~~~~il~~l~~~-------~~~~~~~~~- 261 (961)
+-..++|+|..|+|||+|| ..+.+.. +-+ .++++-+.+.. ++.++...+.+.=... ..+......
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~ 236 (502)
T 2qe7_A 161 RGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLY 236 (502)
T ss_dssp TTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHH
T ss_pred cCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHH
Confidence 3457899999999999995 5777732 345 34677777665 3444555554421111 111111111
Q ss_pred ----HHHHHHHHh--cCCceEEEeecc
Q 037574 262 ----VLQYINEFV--QGKKVLLVLDDV 282 (961)
Q Consensus 262 ----~~~~l~~~l--~~kr~LlVlDdv 282 (961)
..-.+.+++ +|+.+||++||+
T Consensus 237 ~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 237 LAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 112233333 589999999999
No 409
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.39 E-value=0.11 Score=51.76 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCchHHHHHHHHhC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.-.+++|+|+.|+|||||++.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 446999999999999999999976
No 410
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.33 E-value=0.11 Score=49.94 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCchHHHHHHHHhC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
...+|+|+|+.|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999977
No 411
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.31 E-value=0.11 Score=51.31 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCchHHHHHHHHhC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
...+|+|.|+.|+||||+|+.+.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 412
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.29 E-value=0.16 Score=51.23 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 037574 194 LPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
-.+++|+|+.|+|||||++.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 36899999999999999999986
No 413
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.28 E-value=0.091 Score=51.12 Aligned_cols=21 Identities=33% Similarity=0.634 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 037574 196 VIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~ 216 (961)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 414
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.26 E-value=0.3 Score=54.12 Aligned_cols=86 Identities=20% Similarity=0.243 Sum_probs=50.1
Q ss_pred CccEEEEEcCCCchHHHHH-HHHhCChhhhccCce-eEEEEeCCCC-CHHHHHHHHHHHhcC-------CCCCcccHHH-
Q 037574 193 TLPVIWILGKEGIGKTALA-RQVFDDSDVKANFDK-RIWVSASCPR-DEIRVAKAILESLKG-------SVSSQVEMET- 261 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~s~~~-~~~~~~~~il~~l~~-------~~~~~~~~~~- 261 (961)
+-..++|+|..|+|||+|| ..+.+.. .-+. ++++-+.+.. ++.++.+.+.+.=.. ...+......
T Consensus 174 rGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~ 249 (515)
T 2r9v_A 174 RGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQY 249 (515)
T ss_dssp TTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHH
T ss_pred cCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHH
Confidence 3457899999999999995 5777742 2453 4677777665 344555555442110 1111111111
Q ss_pred ----HHHHHHHHh--cCCceEEEeecc
Q 037574 262 ----VLQYINEFV--QGKKVLLVLDDV 282 (961)
Q Consensus 262 ----~~~~l~~~l--~~kr~LlVlDdv 282 (961)
..-.+.+++ +|+.+||++||+
T Consensus 250 ~a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 250 IAPYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 112233333 589999999999
No 415
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=91.19 E-value=0.24 Score=54.11 Aligned_cols=86 Identities=12% Similarity=0.235 Sum_probs=50.8
Q ss_pred cEEEEEcCCCchHHHHHHHHhCChhhhccCc----eeEEEEeCCCC-CHHHHHHHHHHH--hcC-----CCCCcccHH--
Q 037574 195 PVIWILGKEGIGKTALARQVFDDSDVKANFD----KRIWVSASCPR-DEIRVAKAILES--LKG-----SVSSQVEME-- 260 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~~s~~~-~~~~~~~~il~~--l~~-----~~~~~~~~~-- 260 (961)
..++|.|..|+|||+|+.++.+... .+-+ .++++-+.+.. .+.++..++.+. +.. ...+.....
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~--~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQAT--VLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCB--CSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHH--hccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence 4578999999999999999988432 2223 56677776554 445555555443 110 011111111
Q ss_pred ---HHHHHHHHHh---cCCceEEEeecc
Q 037574 261 ---TVLQYINEFV---QGKKVLLVLDDV 282 (961)
Q Consensus 261 ---~~~~~l~~~l---~~kr~LlVlDdv 282 (961)
...-.+.+++ +++.+||++||+
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 1122344444 378999999999
No 416
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.14 E-value=0.22 Score=52.62 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=22.2
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
....+|+|+|..|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999999976
No 417
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.12 E-value=0.12 Score=52.26 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.9
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.. .+++|+|+.|+|||||.+.+..
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHT
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhC
Confidence 45 7999999999999999999976
No 418
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.12 E-value=0.13 Score=51.14 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=22.9
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
....+|+|+|.+|+|||||+..+...
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999873
No 419
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.12 E-value=0.44 Score=54.30 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCchHHHHHHHHhC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.-.+++|+|+.|+|||||.+.+..
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 346999999999999999999975
No 420
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.12 E-value=0.099 Score=52.48 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCchHHHHHHHHhC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
....|.|.|+.|+||||+|+.+.+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999976
No 421
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.04 E-value=1 Score=52.01 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCchHHHHHHHHhC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.-.+++|+|+.|+|||||.+.+..
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhc
Confidence 346999999999999999999875
No 422
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.03 E-value=0.15 Score=50.95 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 037574 194 LPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
-.+++|+|+.|+|||||++.++.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999986
No 423
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.02 E-value=0.095 Score=52.40 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCchHHHHHHHHhC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
....|.|.|+.|+||||+|+.+.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999987
No 424
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.01 E-value=0.76 Score=52.25 Aligned_cols=55 Identities=13% Similarity=-0.045 Sum_probs=37.9
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhc
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLK 250 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~ 250 (961)
.-.++.|.|.+|+||||||.+++.+.... +=..++|++... +..++...++....
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~~ 295 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLHN 295 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHHT
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHHc
Confidence 44689999999999999999998742221 112577777543 46677777665543
No 425
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.00 E-value=0.1 Score=50.61 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 037574 196 VIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
+++|+|+.|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999999864
No 426
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.93 E-value=0.12 Score=53.73 Aligned_cols=24 Identities=29% Similarity=0.438 Sum_probs=21.6
Q ss_pred CCccEEEEEcCCCchHHHHHHHHh
Q 037574 192 PTLPVIWILGKEGIGKTALARQVF 215 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~ 215 (961)
+...+|+|.|+.|+||||+|+.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 446789999999999999999997
No 427
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=90.88 E-value=0.48 Score=52.88 Aligned_cols=58 Identities=17% Similarity=0.193 Sum_probs=40.6
Q ss_pred HHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHH-HHHHH
Q 037574 174 NILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEI-RVAKA 244 (961)
Q Consensus 174 ~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~-~~~~~ 244 (961)
++++.|..- .+-..++|.|..|+|||+|++++.+. .+-+.++++-+.+..... +++.+
T Consensus 216 rvID~l~Pi---------gkGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~ 274 (588)
T 3mfy_A 216 RVIDTFFPQ---------AKGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEE 274 (588)
T ss_dssp HHHHHHSCE---------ETTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHH
T ss_pred chhhccCCc---------ccCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHH
Confidence 456666643 34468999999999999999998762 233567888888766443 44444
No 428
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=90.86 E-value=0.7 Score=51.00 Aligned_cols=84 Identities=23% Similarity=0.313 Sum_probs=49.9
Q ss_pred CccEEEEEcCCCchHHHHH-HHHhCChhhhccCc-eeEEEEeCCCC-CHHHHHHHHHHHhcCC-------CCCcccHH--
Q 037574 193 TLPVIWILGKEGIGKTALA-RQVFDDSDVKANFD-KRIWVSASCPR-DEIRVAKAILESLKGS-------VSSQVEME-- 260 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~s~~~-~~~~~~~~il~~l~~~-------~~~~~~~~-- 260 (961)
+-..++|.|..|+|||+|| ..+.+. .+-+ .++++-+.+.. ++.++..++.+.=... ..+.....
T Consensus 161 rGQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~ 236 (513)
T 3oaa_A 161 RGQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQY 236 (513)
T ss_dssp TTCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHH
T ss_pred cCCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHH
Confidence 3456899999999999996 566663 2233 35778888765 3445555544431111 11111111
Q ss_pred -------HHHHHHHHHhcCCceEEEeecc
Q 037574 261 -------TVLQYINEFVQGKKVLLVLDDV 282 (961)
Q Consensus 261 -------~~~~~l~~~l~~kr~LlVlDdv 282 (961)
.+.+++++ +|+.+||++||+
T Consensus 237 ~a~~~a~tiAEyfrd--~G~dVLli~Dsl 263 (513)
T 3oaa_A 237 LAPYAGCAMGEYFRD--RGEDALIIYDDL 263 (513)
T ss_dssp HHHHHHHHHHHHHHH--TTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHh--cCCCEEEEecCh
Confidence 22333433 589999999999
No 429
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.80 E-value=0.07 Score=52.97 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 037574 196 VIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~ 216 (961)
+|+|.|..|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 789999999999999999977
No 430
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.73 E-value=0.11 Score=51.62 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 037574 196 VIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 431
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.70 E-value=0.19 Score=51.60 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 037574 194 LPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
-.+++|+|+.|+|||||++.++.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999976
No 432
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.70 E-value=0.13 Score=50.51 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=20.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 037574 195 PVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
..|+|.|+.|+||||+++.+.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 433
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.68 E-value=0.12 Score=52.55 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCchHHHHHHHHhC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.-.+++|+|+.|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 346999999999999999999884
No 434
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.64 E-value=0.15 Score=48.59 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
..++++|+|..|+|||||+..+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 4689999999999999999999873
No 435
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.57 E-value=0.22 Score=53.78 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=22.5
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
++..+|+|+|.+|+|||||+..+..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 5678999999999999999999876
No 436
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.48 E-value=0.12 Score=51.37 Aligned_cols=21 Identities=19% Similarity=0.468 Sum_probs=19.1
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 037574 196 VIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.|+|.|++|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 437
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=90.39 E-value=0.15 Score=56.09 Aligned_cols=53 Identities=23% Similarity=0.354 Sum_probs=35.3
Q ss_pred CccccchHHHHHHHHHHhCC-----CCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhC
Q 037574 163 LEFHGRNVEKKNILQLLKGE-----SSDEESGSKPTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~-----~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
..++|.+..++.+...+... .... .......+-|.++|++|+||||+|+.++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~-~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEP-LRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTT-TTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccc-cccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 35789888888887666321 0000 00001235588999999999999999987
No 438
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.38 E-value=0.12 Score=52.58 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=20.5
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 037574 195 PVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.+|+|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 439
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.35 E-value=0.1 Score=52.62 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=16.5
Q ss_pred ccEEEEEcCCCchHHHHHHHHh-C
Q 037574 194 LPVIWILGKEGIGKTALARQVF-D 216 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~-~ 216 (961)
-.+++|+|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3689999999999999999998 5
No 440
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.30 E-value=0.21 Score=51.09 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 037574 194 LPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
-.+++|+|+.|+|||||++.++.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 36899999999999999999976
No 441
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=90.28 E-value=0.47 Score=52.63 Aligned_cols=100 Identities=18% Similarity=0.229 Sum_probs=55.5
Q ss_pred HHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHH-HHHhCChhh----hccCc-eeEEEEeCCCC-CHHHHHHHHH
Q 037574 174 NILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALA-RQVFDDSDV----KANFD-KRIWVSASCPR-DEIRVAKAIL 246 (961)
Q Consensus 174 ~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~----~~~F~-~~~wv~~s~~~-~~~~~~~~il 246 (961)
+.++.|..- .+-..++|+|..|+|||+|| ..+.+.... ..+-+ .++++-+.+.. ++.++.+.+.
T Consensus 151 raID~l~Pi---------grGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~ 221 (510)
T 2ck3_A 151 KAVDSLVPI---------GRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLT 221 (510)
T ss_dssp HHHHHHSCC---------BTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHH
T ss_pred eeecccccc---------ccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHH
Confidence 355666543 33456899999999999994 566664221 01234 46777787765 3444555554
Q ss_pred HHhcC-------CCCCcccHHH-----HHHHHHHHh--cCCceEEEeecc
Q 037574 247 ESLKG-------SVSSQVEMET-----VLQYINEFV--QGKKVLLVLDDV 282 (961)
Q Consensus 247 ~~l~~-------~~~~~~~~~~-----~~~~l~~~l--~~kr~LlVlDdv 282 (961)
+.=.. ...+...... ..-.+.+++ +|+.+||++||+
T Consensus 222 ~~g~m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 222 DADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp HTTCGGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred hcCCcccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 42100 0111111111 112233333 589999999999
No 442
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=90.28 E-value=0.67 Score=53.34 Aligned_cols=104 Identities=19% Similarity=0.262 Sum_probs=54.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHH-HHhc--
Q 037574 195 PVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVSSQVEMETVLQYIN-EFVQ-- 271 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~-~~l~-- 271 (961)
+++.|.|.+|+||||++..+.... ... ...+.+.+... .....+.+.++.. ..+...+..... .+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l--~~~-g~~Vl~~ApT~----~Aa~~L~e~~~~~---a~Tih~ll~~~~~~~~~~~ 274 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLA--ESL-GLEVGLCAPTG----KAARRLGEVTGRT---ASTVHRLLGYGPQGFRHNH 274 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH--HHT-TCCEEEEESSH----HHHHHHHHHHTSC---EEEHHHHTTEETTEESCSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH--Hhc-CCeEEEecCcH----HHHHHhHhhhccc---HHHHHHHHcCCcchhhhhh
Confidence 589999999999999999998732 221 23444443322 1222233333211 111111110000 0000
Q ss_pred ---CCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecC
Q 037574 272 ---GKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRR 312 (961)
Q Consensus 272 ---~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR 312 (961)
.+--+||+|++. .-+...+..+...++ .+.++|+.--
T Consensus 275 ~~~~~~dvlIIDEas-ml~~~~~~~Ll~~~~---~~~~lilvGD 314 (574)
T 3e1s_A 275 LEPAPYDLLIVDEVS-MMGDALMLSLLAAVP---PGARVLLVGD 314 (574)
T ss_dssp SSCCSCSEEEECCGG-GCCHHHHHHHHTTSC---TTCEEEEEEC
T ss_pred cccccCCEEEEcCcc-CCCHHHHHHHHHhCc---CCCEEEEEec
Confidence 123489999996 445566666665554 4667777643
No 443
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.26 E-value=0.14 Score=50.74 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCchHHHHHHHHhC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
...+|.|.|+.|+||||+++.+..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 444
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.24 E-value=0.14 Score=53.61 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCchHHHHHHHHhC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
...+++|+|+.|+||||+++.++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 445
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.23 E-value=0.16 Score=50.62 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 037574 194 LPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999964
No 446
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=90.22 E-value=0.69 Score=46.44 Aligned_cols=88 Identities=18% Similarity=0.228 Sum_probs=45.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhCChhh-hccC-ceeEEEEeCCCCCHHHHHHHHHHHhcCCCC---------------C--
Q 037574 195 PVIWILGKEGIGKTALARQVFDDSDV-KANF-DKRIWVSASCPRDEIRVAKAILESLKGSVS---------------S-- 255 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~s~~~~~~~~~~~il~~l~~~~~---------------~-- 255 (961)
..+.|.|..|+||||+...+.-+... .... ...+.+..........+...+...++.... .
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 47899999999999876665432111 1222 123333333222223333444433332110 0
Q ss_pred ---cccHHHHHHHHHHHhcCCceEEEeeccc
Q 037574 256 ---QVEMETVLQYINEFVQGKKVLLVLDDVW 283 (961)
Q Consensus 256 ---~~~~~~~~~~l~~~l~~kr~LlVlDdvw 283 (961)
..+.+.+.+.+...+.+ --+||+|.++
T Consensus 157 ~Ivv~Tpg~l~~~l~~~l~~-~~~lVlDEah 186 (235)
T 3llm_A 157 SIMFCTVGVLLRKLEAGIRG-ISHVIVDEIH 186 (235)
T ss_dssp EEEEEEHHHHHHHHHHCCTT-CCEEEECCTT
T ss_pred eEEEECHHHHHHHHHhhhcC-CcEEEEECCc
Confidence 13456666666554433 3478999995
No 447
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.20 E-value=1 Score=52.18 Aligned_cols=125 Identities=14% Similarity=0.078 Sum_probs=67.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhCChhh-hcc--Cc-eeEEEEeC----CCCCHHHHH--------------HHHHHHhcCC
Q 037574 195 PVIWILGKEGIGKTALARQVFDDSDV-KAN--FD-KRIWVSAS----CPRDEIRVA--------------KAILESLKGS 252 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~--F~-~~~wv~~s----~~~~~~~~~--------------~~il~~l~~~ 252 (961)
.+++|+|+.|+|||||++.++.-... .+. +. .+.++.-. ...++.+.+ .++++.++..
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~ 462 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGII 462 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc
Confidence 58999999999999999999874221 111 11 23343311 112333322 2233334332
Q ss_pred CC-----CcccH-HHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC--CCCcEEEEecCCCccccc
Q 037574 253 VS-----SQVEM-ETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG--SEGSRILVTRRGEKNGTN 319 (961)
Q Consensus 253 ~~-----~~~~~-~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~~ 319 (961)
.. ..-+. +.-.-.|.+.|..++-+|+||.--..-|...-..+...+... ..|..||++|-+...+..
T Consensus 463 ~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~ 537 (607)
T 3bk7_A 463 DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDY 537 (607)
T ss_dssp TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 11 11122 233334666777788899999874334555544555554432 235567777877654443
No 448
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.19 E-value=0.14 Score=50.52 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 037574 196 VIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~ 216 (961)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999977
No 449
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.14 E-value=0.61 Score=47.20 Aligned_cols=50 Identities=16% Similarity=0.266 Sum_probs=32.4
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHH
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAI 245 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 245 (961)
.-.++.|.|.+|+|||++|.+++.+. ....-..+++++.. .+...+...+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E--~~~~~~~~~~ 78 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLE--ERARDLRREM 78 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESS--SCHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeeccc--CCHHHHHHHH
Confidence 34689999999999999999976532 22222345666644 3455554443
No 450
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.12 E-value=0.19 Score=48.32 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=22.5
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
.....|+|+|.+|+|||||...+...
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567999999999999999999874
No 451
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.00 E-value=0.12 Score=51.00 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=20.6
Q ss_pred cEEEEEcCCCchHHHHHHHHhCC
Q 037574 195 PVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
.+++|+|+.|+|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999763
No 452
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.99 E-value=0.13 Score=51.27 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 037574 194 LPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
...|.|.|+.|+||||+|+.+.+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999977
No 453
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=89.98 E-value=0.66 Score=53.63 Aligned_cols=125 Identities=10% Similarity=0.026 Sum_probs=65.8
Q ss_pred cEEEEEcCCCchHHHHHHHHhCChhhh-cc-C-c-eeEEEEeC--C--CCCHH--------------HHHHHHHHHhcCC
Q 037574 195 PVIWILGKEGIGKTALARQVFDDSDVK-AN-F-D-KRIWVSAS--C--PRDEI--------------RVAKAILESLKGS 252 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~-F-~-~~~wv~~s--~--~~~~~--------------~~~~~il~~l~~~ 252 (961)
.+++|+|+.|+|||||++.++.-.... +. . . .+.++.-. . ..++. ....++++.++..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 579999999999999999998632111 10 0 0 12222110 0 01121 2233344444432
Q ss_pred C-----CCccc-HHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCC--CCCcEEEEecCCCccccc
Q 037574 253 V-----SSQVE-METVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSG--SEGSRILVTRRGEKNGTN 319 (961)
Q Consensus 253 ~-----~~~~~-~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~~ 319 (961)
. ...-+ -+.-.-.|.+.|..++=+|+||.--..-|...-..+...+... ..|..||++|.+...+..
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~ 533 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATY 533 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHH
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 1 11122 2233345666778888999999874333444444444444331 235567777777655443
No 454
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=89.89 E-value=0.23 Score=54.34 Aligned_cols=89 Identities=13% Similarity=0.230 Sum_probs=50.6
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhh--------ccCc-eeEEEEeCCCC-CHHHHHHHHHHH--hcC-----CCCCc
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVK--------ANFD-KRIWVSASCPR-DEIRVAKAILES--LKG-----SVSSQ 256 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~~s~~~-~~~~~~~~il~~--l~~-----~~~~~ 256 (961)
-..++|.|..|+|||+|+.++.+..... ++=+ .++++-+.+.. .+.++..++.+. +.. ...+.
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~ 226 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADD 226 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTS
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCC
Confidence 3467899999999999999998753321 1112 56667776554 344455554432 100 01111
Q ss_pred ccHH-----HHHHHHHHHh---cCCceEEEeecc
Q 037574 257 VEME-----TVLQYINEFV---QGKKVLLVLDDV 282 (961)
Q Consensus 257 ~~~~-----~~~~~l~~~l---~~kr~LlVlDdv 282 (961)
.... ...-.+.+++ +++.+||++||+
T Consensus 227 p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 227 PTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 1111 1222344444 378999999999
No 455
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.86 E-value=0.16 Score=51.43 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 037574 194 LPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
-.+++|+|+.|+|||||.+.++.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999976
No 456
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.82 E-value=0.57 Score=60.96 Aligned_cols=85 Identities=24% Similarity=0.280 Sum_probs=58.0
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CcccHHHHHHHH
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVS-----SQVEMETVLQYI 266 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l 266 (961)
..-.++.|+|.+|+||||||.+++... ...=..++|++....++... ++.++.+.. +..+.+++...+
T Consensus 381 ~~G~lilI~G~pGsGKTtLaLqia~~~--a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 381 PMGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 453 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHH
Confidence 345799999999999999999998743 22223688888877766542 455554321 234566666666
Q ss_pred HHHh-cCCceEEEeeccc
Q 037574 267 NEFV-QGKKVLLVLDDVW 283 (961)
Q Consensus 267 ~~~l-~~kr~LlVlDdvw 283 (961)
+... ..+.-+||+|-+.
T Consensus 454 ~~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHHhcCCcEEEECCHH
Confidence 6554 3556799999884
No 457
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=89.80 E-value=0.58 Score=52.43 Aligned_cols=50 Identities=16% Similarity=0.162 Sum_probs=37.0
Q ss_pred HHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCC
Q 037574 174 NILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPR 236 (961)
Q Consensus 174 ~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~ 236 (961)
++++.|..- .+-..++|.|..|+|||+|+.++.+. .+-+.++++-+.+..
T Consensus 221 rvID~l~Pi---------grGqr~~Ifgg~g~GKT~L~~~ia~~----~~~~v~V~~~iGER~ 270 (600)
T 3vr4_A 221 RVIDTFFPV---------TKGGAAAVPGPFGAGKTVVQHQIAKW----SDVDLVVYVGCGERG 270 (600)
T ss_dssp HHHHHHSCC---------BTTCEEEEECCTTSCHHHHHHHHHHH----SSCSEEEEEEEEECH
T ss_pred hhhhccCCc---------cCCCEEeeecCCCccHHHHHHHHHhc----cCCCEEEEEEecccH
Confidence 466777654 34468999999999999999999873 233567788777653
No 458
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=89.77 E-value=1.1 Score=50.21 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.2
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
....+|+|+|.+|+||||++..+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999986
No 459
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=89.76 E-value=1.7 Score=52.64 Aligned_cols=119 Identities=16% Similarity=0.084 Sum_probs=67.5
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhccCc-----eeEEEEeCCC-------CCH-----------HHHHHHHHHHhc
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKANFD-----KRIWVSASCP-------RDE-----------IRVAKAILESLK 250 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-----~~~wv~~s~~-------~~~-----------~~~~~~il~~l~ 250 (961)
-.+++|+|+.|+|||||++.+..- .+. .++ .+.+ +.+. .++ .....++++.++
T Consensus 461 Ge~v~LiGpNGsGKSTLLk~LagG-~i~-g~~~~~~~~~~~--v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lg 536 (986)
T 2iw3_A 461 ARRYGICGPNGCGKSTLMRAIANG-QVD-GFPTQEECRTVY--VEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFG 536 (986)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHT-CST-TCCCTTTSCEEE--TTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC-CcC-CCccccceeEEE--EcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcC
Confidence 368999999999999999999831 111 111 1122 2221 122 223345566655
Q ss_pred CCC-------CCcccHHHHHHHHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCcccc
Q 037574 251 GSV-------SSQVEMETVLQYINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNGT 318 (961)
Q Consensus 251 ~~~-------~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 318 (961)
... ..-+.-+...-.|.+.+-.++=+|+||.--..-|...-..+...+.. .|..||++|.+.....
T Consensus 537 L~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~ 609 (986)
T 2iw3_A 537 FTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLD 609 (986)
T ss_dssp CCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHH
T ss_pred CChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHH
Confidence 421 01122223333455566677889999987544455555566666655 4667888887665443
No 460
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.71 E-value=0.18 Score=50.42 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 037574 194 LPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
..+|+|.|+.|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 461
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.71 E-value=0.16 Score=51.93 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 037574 194 LPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
-.+++|+|+.|+|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999975
No 462
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.60 E-value=0.21 Score=48.29 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=22.4
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
.....|+|+|.+|+|||||+..+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34568999999999999999999764
No 463
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.57 E-value=0.56 Score=60.21 Aligned_cols=84 Identities=23% Similarity=0.255 Sum_probs=57.4
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHH
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVS-----SQVEMETVLQYIN 267 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 267 (961)
.-.++.|.|.+|+||||||.+++.... ..=..++|++....++.. .++.++.+.. ...+.+++.+.+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~--~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--HhCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 457999999999999999999987432 222468899887777653 2455554321 1234566666665
Q ss_pred HHh-cCCceEEEeeccc
Q 037574 268 EFV-QGKKVLLVLDDVW 283 (961)
Q Consensus 268 ~~l-~~kr~LlVlDdvw 283 (961)
... ..+.-+||+|-+.
T Consensus 455 ~lv~~~~~~lVVIDSL~ 471 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVA 471 (1706)
T ss_dssp HHHHHTCCSEEEESCST
T ss_pred HHHHhcCCCEEEECCHH
Confidence 544 3456699999984
No 464
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.56 E-value=0.19 Score=52.90 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCchHHHHHHHHhC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
..++|.|+|+.|+||||||..+++
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999988
No 465
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=89.53 E-value=0.76 Score=49.71 Aligned_cols=47 Identities=26% Similarity=0.405 Sum_probs=32.7
Q ss_pred CccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCC
Q 037574 163 LEFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
..++|....+.++.+.+..... .. ..|.|.|.+|+||+++|+.+.+.
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~-------~~-~~vli~GesGtGKe~lAr~ih~~ 175 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK-------SK-APVLITGESGTGKEIVARLIHRY 175 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT-------SC-SCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhc-------cc-hhheEEeCCCchHHHHHHHHHHh
Confidence 3577877776666655543221 22 33679999999999999999763
No 466
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.49 E-value=0.15 Score=53.90 Aligned_cols=22 Identities=36% Similarity=0.427 Sum_probs=20.6
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 037574 195 PVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.+|+|.|+.|+||||||..++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999987
No 467
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=89.46 E-value=0.24 Score=54.46 Aligned_cols=89 Identities=13% Similarity=0.197 Sum_probs=51.5
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCChhhhcc--CceeEEEEeCCCC-CHHHHHHHHHHHhcCC-------CCCcccHH---
Q 037574 194 LPVIWILGKEGIGKTALARQVFDDSDVKAN--FDKRIWVSASCPR-DEIRVAKAILESLKGS-------VSSQVEME--- 260 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~s~~~-~~~~~~~~il~~l~~~-------~~~~~~~~--- 260 (961)
-..++|.|..|+|||+|+.+++++....+. =+.++++-+.+.. .+.++..++.+.=... ..+.....
T Consensus 152 GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~ 231 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIV 231 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHH
Confidence 356788899999999999999885433111 1356667676554 4455665655431110 11111111
Q ss_pred --HHHHHHHHHh---cCCceEEEeecc
Q 037574 261 --TVLQYINEFV---QGKKVLLVLDDV 282 (961)
Q Consensus 261 --~~~~~l~~~l---~~kr~LlVlDdv 282 (961)
...-.+.+++ +++.+||++||+
T Consensus 232 ~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 232 TPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 1122233443 479999999998
No 468
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=89.41 E-value=0.7 Score=56.12 Aligned_cols=22 Identities=27% Similarity=0.188 Sum_probs=20.1
Q ss_pred CccEEEEEcCCCchHHHHHHHH
Q 037574 193 TLPVIWILGKEGIGKTALARQV 214 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v 214 (961)
.-.+++|+|+.|.||||+.+.+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3479999999999999999998
No 469
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.39 E-value=1.1 Score=51.80 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 037574 194 LPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
-.+++|+|+.|.|||||++.+..
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999865
No 470
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=89.39 E-value=0.8 Score=50.18 Aligned_cols=104 Identities=14% Similarity=0.125 Sum_probs=55.8
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCC---C---CCcccHHHHHHH
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGS---V---SSQVEMETVLQY 265 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~---~---~~~~~~~~~~~~ 265 (961)
...++..|.|.+|.||||+.+..++. ....-++ . . .+...++-+.+... . ....+.+. .
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~~-------~~~lVlT-p-T---~~aa~~l~~kl~~~~~~~~~~~~V~T~ds---f 223 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVNF-------EEDLILV-P-G---RQAAEMIRRRANASGIIVATKDNVRTVDS---F 223 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCCT-------TTCEEEE-S-C---HHHHHHHHHHHTTTSCCCCCTTTEEEHHH---H
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhcc-------CCeEEEe-C-C---HHHHHHHHHHhhhcCccccccceEEEeHH---h
Confidence 56789999999999999999998862 1122232 1 1 22334444444321 1 11233332 2
Q ss_pred HHHHhcCC---ceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCc
Q 037574 266 INEFVQGK---KVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEK 315 (961)
Q Consensus 266 l~~~l~~k---r~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 315 (961)
+.+....+ -=+||+|++. .-+...+..+....+ ..+||+.--..+
T Consensus 224 L~~~~~~~~~~~d~liiDE~s-m~~~~~l~~l~~~~~----~~~vilvGD~~Q 271 (446)
T 3vkw_A 224 LMNYGKGARCQFKRLFIDEGL-MLHTGCVNFLVEMSL----CDIAYVYGDTQQ 271 (446)
T ss_dssp HHTTTSSCCCCCSEEEEETGG-GSCHHHHHHHHHHTT----CSEEEEEECTTS
T ss_pred hcCCCCCCCCcCCEEEEeCcc-cCCHHHHHHHHHhCC----CCEEEEecCccc
Confidence 22211111 2489999996 334455555544432 257777654333
No 471
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.39 E-value=0.25 Score=50.61 Aligned_cols=110 Identities=11% Similarity=0.110 Sum_probs=57.8
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCC-CCCHHHHHHHHHH--HhcCCCCCcccHHHHHHHHHHH
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASC-PRDEIRVAKAILE--SLKGSVSSQVEMETVLQYINEF 269 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~il~--~l~~~~~~~~~~~~~~~~l~~~ 269 (961)
.-.+++|+|+.|+|||||++.+..- +...+...+++.-.. .+-.... ..++. .++. +. ..+...+.+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl---~~---~~l~~~la~a 94 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVFKHK-KSIVNQREVGE---DT---KSFADALRAA 94 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT---TB---SCHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCcceeecCCc-ceeeeHHHhCC---CH---HHHHHHHHHH
Confidence 3468999999999999999999872 222223344332110 0000000 00000 0000 01 1234456666
Q ss_pred hcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCccc
Q 037574 270 VQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNG 317 (961)
Q Consensus 270 l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 317 (961)
+..++=+|++|+.- +.+....+.... ..|.-|++||-...+.
T Consensus 95 L~~~p~illlDEp~---D~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 95 LREDPDVIFVGEMR---DLETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp HHHCCSEEEESCCC---SHHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred HhhCCCEEEeCCCC---CHHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 66677799999983 444443333332 2466788888766543
No 472
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=89.39 E-value=0.85 Score=53.01 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 037574 194 LPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
-.+++|+|+.|.|||||++.+..
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999975
No 473
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.38 E-value=0.35 Score=48.44 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
....|.|.|+.|+||||+++.+.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999883
No 474
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.34 E-value=0.19 Score=50.59 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCchHHHHHHHHhC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
....|.|.|+.|+||||+|+.+.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999987
No 475
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=89.34 E-value=0.73 Score=53.31 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 037574 194 LPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
-.+++|+|+.|.|||||++.+..
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTT
T ss_pred CCEEEEECCCCChHHHHHHHHhc
Confidence 46899999999999999998865
No 476
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.33 E-value=0.16 Score=50.27 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 037574 196 VIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999977
No 477
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.23 E-value=0.19 Score=51.10 Aligned_cols=22 Identities=23% Similarity=0.560 Sum_probs=20.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 037574 195 PVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.+++|+|+.|+|||||.+.++.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999987
No 478
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.20 E-value=0.21 Score=51.22 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.2
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
....++.+.|.||+||||++..+..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHH
Confidence 4568889999999999999999985
No 479
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.19 E-value=0.17 Score=50.55 Aligned_cols=21 Identities=38% Similarity=0.485 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 037574 196 VIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999976
No 480
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=89.13 E-value=0.2 Score=53.79 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCchHHHHHHHHhC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
...+++|+|+.|+||||+++.++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 457999999999999999999987
No 481
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.97 E-value=0.2 Score=48.51 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCC
Q 037574 194 LPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
.-.|+|+|..|+|||||++.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999764
No 482
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=88.96 E-value=0.19 Score=48.33 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 037574 196 VIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 196 vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
-|+|+|.+|+|||||+..+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999874
No 483
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.91 E-value=0.19 Score=51.97 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 037574 194 LPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
-.+++|+|+.|+|||||++.++.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999976
No 484
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.88 E-value=0.23 Score=46.76 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=20.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhCC
Q 037574 195 PVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 485
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.87 E-value=0.24 Score=51.79 Aligned_cols=24 Identities=17% Similarity=0.337 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCchHHHHHHHHhC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.-.+++|+|+.|+|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 346899999999999999999987
No 486
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=88.86 E-value=0.97 Score=61.60 Aligned_cols=243 Identities=9% Similarity=0.051 Sum_probs=0.0
Q ss_pred EEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhc-------CCCCCcccHHHHHHHHHHH
Q 037574 197 IWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLK-------GSVSSQVEMETVLQYINEF 269 (961)
Q Consensus 197 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~-------~~~~~~~~~~~~~~~l~~~ 269 (961)
|.++|+.|+|||++++.+.. +... ...+.++.|...+...++..+-..+. +.......
T Consensus 1307 vLL~GptGtGKT~li~~~L~--~l~~--~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~----------- 1371 (3245)
T 3vkg_A 1307 LILCGPPGSGKTMTLTSTLR--AFPD--FEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQ----------- 1371 (3245)
T ss_dssp CEEESSTTSSHHHHHHHHGG--GCTT--EEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESS-----------
T ss_pred EEEECCCCCCHHHHHHHHHH--hCCC--CceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCc-----------
Q ss_pred hcCCceEEEeecccCCCChh------hHHHHHHhccCCC---CCcEEEEecCCCcccccccccc------cccCCCCCcc
Q 037574 270 VQGKKVLLVLDDVWWNACPR------YWEQLMYSLKSGS---EGSRILVTRRGEKNGTNMTEIG------LGEKDGTNMT 334 (961)
Q Consensus 270 l~~kr~LlVlDdvw~~~~~~------~~~~l~~~l~~~~---~gs~ilvTtR~~~v~~~~~~~~------~~~~~~~~~~ 334 (961)
.||+.++++||+- -...+ ..+.++..+..++ ..-.-.++-.+-.+...|...+ +...-..++.
T Consensus 1372 -~Gk~~VlFiDDiN-mp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~ 1449 (3245)
T 3vkg_A 1372 -LGKWLVVFCDEIN-LPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAP 1449 (3245)
T ss_dssp -TTCEEEEEETTTT-CCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCC
T ss_pred -CCceEEEEecccC-CCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhce
Q ss_pred eeecCCCChHHHHHHHHHHHcCCCCCCCccchHHHHHHHHHhcCCchHHHHHHHhhccCCCCHHHHHHHhhhhhcccchh
Q 037574 335 EIGLGELSAKECRSLFRQIAFDGRSSDDREKFEPIGRLVVGKCKGLPFAVKILGSLLRFKTSIEEWQSVLDSEIWNLDSK 414 (961)
Q Consensus 335 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~ 414 (961)
.+.+...+.++-..+|......-.... +.+...+..|++. ..+-|..+...
T Consensus 1450 vi~i~~ps~esL~~If~til~~~l~~~--p~l~~~~~~lv~a-------------------ti~ly~~v~~~-------- 1500 (3245)
T 3vkg_A 1450 ILLVDFPSTSSLTQIYGTFNRALMKLL--PNLRSFADNLTDA-------------------MVEFYSESQKR-------- 1500 (3245)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTTSC--GGGTTSHHHHHHH-------------------HHHHHHHHHHH--------
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHH-------------------HHHHHHHHHHh--------
Q ss_pred hhhccCCCCcchhhhHhhhc-CCChHHHHHhhHhccCCCCcccChHHHHHHHHHcC---cccccccccHHHHHHHHHHHH
Q 037574 415 ICKRAGVGDEYFSPLLLSYY-DLSPALKKCFLYCSIFPKNYEIEKDRLIKLWMAQG---YLKLLESEDMEVIGEEYFANL 490 (961)
Q Consensus 415 ~~~~~~~~~~~~~~l~~sy~-~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~W~a~g---~i~~~~~~~~~~~~~~~~~~L 490 (961)
+.+.-+..|- +|.+-.|-|--.|-..+.....+.+.++++|+-|+ |-+.--+....+.....+.+.
T Consensus 1501 ----------~lp~~k~HY~FnLRDLsrv~qGll~~~~~~~~~~~~~lvrLW~HE~~RVF~DRLv~~~Dr~~f~~~l~~~ 1570 (3245)
T 3vkg_A 1501 ----------FTPDIQAHYIYSPRELSRWDRALLEAIQTMDGCTLEGLVRLWAHEALRLFQDRLVETEEKEWTDKKIDEV 1570 (3245)
T ss_dssp ----------SCTTTSTTCCCCHHHHHHHHHHHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHH
T ss_pred ----------cCCCcCCCccccHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q ss_pred HhCCC
Q 037574 491 ASRSL 495 (961)
Q Consensus 491 ~~~~l 495 (961)
+...|
T Consensus 1571 ~~~~F 1575 (3245)
T 3vkg_A 1571 ALKHF 1575 (3245)
T ss_dssp HHHHC
T ss_pred HHHhc
No 487
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.72 E-value=0.2 Score=52.06 Aligned_cols=22 Identities=23% Similarity=0.375 Sum_probs=20.6
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 037574 195 PVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 195 ~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
++|.|+|+.|+||||||..++.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHHHH
Confidence 5899999999999999999987
No 488
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.64 E-value=0.19 Score=52.84 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 037574 194 LPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
..+|.|+|+.|+||||||+.+.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 489
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.60 E-value=0.22 Score=51.74 Aligned_cols=24 Identities=29% Similarity=0.248 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCchHHHHHHHHhC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
.-.++.|+|.+|+|||||+..++.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 490
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=88.55 E-value=0.35 Score=46.69 Aligned_cols=68 Identities=16% Similarity=0.154 Sum_probs=30.1
Q ss_pred hccCCcccEEEccCCChhhhhhhcccchhhcCCCCcceEeccCCCCccc-----CCcchhccCCCcEeecCCCC
Q 037574 595 FDQLTCLRTLELSNHDNVLCKVIKKVPKQIKRLIHLRYLNLSKNNKIKK-----LPKTLCELYNLQTLELSWCS 663 (961)
Q Consensus 595 ~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~Lr~L~L~~~~~i~~-----lp~~i~~L~~L~~L~l~~~~ 663 (961)
+.+-+.|+.|+|+++..+.......+-+.+..-.+|+.|+|++|. +.. +-+.+..-..|++|+|++|.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 344455555555543111111122233444444556666665555 332 22333344455555555544
No 491
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.53 E-value=0.26 Score=49.68 Aligned_cols=25 Identities=24% Similarity=0.208 Sum_probs=22.4
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
....+|+|+|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999976
No 492
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.53 E-value=0.41 Score=51.71 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.2
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
+...+++|+|+.|+|||||++.+..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3456999999999999999999986
No 493
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=88.50 E-value=0.41 Score=54.75 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCchHHHHHHHHhCC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
.-.+++|+|..|+|||||++.++..
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4479999999999999999999863
No 494
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.49 E-value=0.23 Score=51.48 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCchHHHHHHHHhC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
..++|.|+|+.|+||||||..+++
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 457899999999999999999987
No 495
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.41 E-value=0.13 Score=53.79 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=18.8
Q ss_pred CccEEEEEcCCCchHHHHHHHHhC
Q 037574 193 TLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
+..+|+|.|..|+||||+|+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999976
No 496
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=88.21 E-value=0.3 Score=56.99 Aligned_cols=42 Identities=17% Similarity=0.297 Sum_probs=35.4
Q ss_pred ccccchHHHHHHHHHHhCCCCCCcCCCCCCccEEEEEcCCCchHHHHHHHHhCC
Q 037574 164 EFHGRNVEKKNILQLLKGESSDEESGSKPTLPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
.++|.+..++.+...+... ..+.|+|+.|+||||||+.+...
T Consensus 42 ~i~G~~~~l~~l~~~i~~g------------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQK------------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTT------------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred eEECchhhHhhccccccCC------------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 5899998888888777642 47899999999999999999873
No 497
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.21 E-value=0.22 Score=50.06 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=22.1
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhC
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFD 216 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~ 216 (961)
....+|+|.|..|+|||||++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3457999999999999999999877
No 498
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.17 E-value=0.23 Score=48.41 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCC
Q 037574 194 LPVIWILGKEGIGKTALARQVFDD 217 (961)
Q Consensus 194 ~~vv~I~G~gGiGKTtLa~~v~~~ 217 (961)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999864
No 499
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=88.05 E-value=1.7 Score=52.68 Aligned_cols=51 Identities=16% Similarity=0.071 Sum_probs=34.4
Q ss_pred HHHHHhcCCceEEEeecccCCCChhhHHHHHHhccCCCCCcEEEEecCCCccc
Q 037574 265 YINEFVQGKKVLLVLDDVWWNACPRYWEQLMYSLKSGSEGSRILVTRRGEKNG 317 (961)
Q Consensus 265 ~l~~~l~~kr~LlVlDdvw~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 317 (961)
.|.+.+-.++-+||||.--..-|......+...+...+ + .||++|.+....
T Consensus 911 aLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g-~-tVIiISHD~e~v 961 (986)
T 2iw3_A 911 VLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFE-G-GVIIITHSAEFT 961 (986)
T ss_dssp HHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCS-S-EEEEECSCHHHH
T ss_pred HHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhC-C-EEEEEECCHHHH
Confidence 45566677888999998754456666677777776542 3 577777765543
No 500
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.05 E-value=0.81 Score=58.78 Aligned_cols=84 Identities=24% Similarity=0.298 Sum_probs=60.5
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhCChhhhccCceeEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CcccHHHHHHHH
Q 037574 192 PTLPVIWILGKEGIGKTALARQVFDDSDVKANFDKRIWVSASCPRDEIRVAKAILESLKGSVS-----SQVEMETVLQYI 266 (961)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l 266 (961)
++-++|-|+|+.|+||||||.++... .+..=...+|+.+....+..- ++.++.+.. .....++....+
T Consensus 1429 prg~~iei~g~~~sGkttl~~~~~a~--~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1429 PMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHH--HHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 45589999999999999999999873 444445688998887777653 777776532 223345566666
Q ss_pred HHHhc-CCceEEEeecc
Q 037574 267 NEFVQ-GKKVLLVLDDV 282 (961)
Q Consensus 267 ~~~l~-~kr~LlVlDdv 282 (961)
...++ +..-+||+|-|
T Consensus 1502 ~~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHHTCCSEEEESCS
T ss_pred HHHHHcCCCCEEEEccH
Confidence 66664 56678999988
Done!