BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037575
(406 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZUY|A Chain A, Crystal Structure Of A Bacterial Homologue Of The Bile
Acid Sodium Symporter Asbt
Length = 323
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 99/243 (40%), Gaps = 8/243 (3%)
Query: 106 PSTFTWVSKELYAP-ALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVL 164
P TF W Y P LG IM +G+ L DF + FK P + +G +AQ+ I P L
Sbjct: 30 PDTFKWAGP--YIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWL 87
Query: 165 IAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDXXXXXXXXXXXXXXXXXXXXXXX 224
++K +P G +L C G S+ ++L++G+
Sbjct: 88 LSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLISPLLTPAIF 147
Query: 225 XXXXXSVIPVDAVAMSKSIXXXXXXXXXXXXXXNTYAKPVVSFLRPVMPFVAMICTSLCI 284
++ + A M SI + L +P V++ L I
Sbjct: 148 LMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLII 207
Query: 285 GSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIPSWRQ-GEEVSRTISLCTGM 343
G+ + ++ +I+ GL + V+ + + + +G++ +K W + +T+++ GM
Sbjct: 208 GAVVGASKGKIME-SGLLIFAVVVLHNGIGYLLGFFAAK---WTGLPYDAQKTLTIEVGM 263
Query: 344 QSS 346
Q+S
Sbjct: 264 QNS 266
>pdb|3ZUX|A Chain A, Crystal Structure Of A Bacterial Homologue Of The Bile
Acid Sodium Symporter Asbt
Length = 332
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 97/243 (39%), Gaps = 8/243 (3%)
Query: 106 PSTFTWVSKELYAP-ALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVL 164
P TF W Y P LG IM +G+ L DF + FK P + +G +AQ+ I P
Sbjct: 35 PDTFKWAGP--YIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWC 92
Query: 165 IAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDXXXXXXXXXXXXXXXXXXXXXXX 224
++K +P G +L C G S+ ++L++G+
Sbjct: 93 LSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIF 152
Query: 225 XXXXXSVIPVDAVAMSKSIXXXXXXXXXXXXXXNTYAKPVVSFLRPVMPFVAMICTSLCI 284
++ + A M SI + L +P V++ L I
Sbjct: 153 LMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLII 212
Query: 285 GSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIPSWRQ-GEEVSRTISLCTGM 343
G+ + ++ +I+ GL + V+ + + + +G++ +K W + + +++ GM
Sbjct: 213 GAVVGASKGKIME-SGLLIFAVVVLHNGIGYLLGFFAAK---WTGLPYDAQKALTIEVGM 268
Query: 344 QSS 346
Q+S
Sbjct: 269 QNS 271
>pdb|4ANP|A Chain A, Crystal Structure Of Human Phenylalanine Hydroxylase In
Complex With A Pharmacological Chaperone
Length = 324
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 318 GYWVSKIPSWRQGEEVSRTISLCTGMQSSTLAGLLATQ-FLG 358
G+ IP Q E+VS+ + CTG + +AGLL+++ FLG
Sbjct: 115 GFHEDNIP---QLEDVSQFLQTCTGFRLRPVAGLLSSRDFLG 153
>pdb|2PAH|A Chain A, Tetrameric Human Phenylalanine Hydroxylase
pdb|2PAH|B Chain B, Tetrameric Human Phenylalanine Hydroxylase
Length = 335
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 318 GYWVSKIPSWRQGEEVSRTISLCTGMQSSTLAGLLATQ-FLG 358
G+ IP Q E+VS+ + CTG + +AGLL+++ FLG
Sbjct: 101 GFHEDNIP---QLEDVSQFLQTCTGFRLRPVAGLLSSRDFLG 139
>pdb|1DMW|A Chain A, Crystal Structure Of Double Truncated Human Phenylalanine
Hydroxylase With Bound 7,8-Dihydro-L-Biopterin
Length = 307
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 318 GYWVSKIPSWRQGEEVSRTISLCTGMQSSTLAGLLATQ-FLG 358
G+ IP Q E+VS+ + CTG + +AGLL+++ FLG
Sbjct: 101 GFHEDNIP---QLEDVSQFLQTCTGFRLRPVAGLLSSRDFLG 139
>pdb|1J8T|A Chain A, Catalytic Domain Of Human Phenylalanine Hydroxylase Fe(Ii)
pdb|1J8U|A Chain A, Catalytic Domain Of Human Phenylalanine Hydroxylase Fe(ii)
In Complex With Tetrahydrobiopterin
pdb|1LRM|A Chain A, Crystal Structure Of Binary Complex Of The Catalytic
Domain Of Human Phenylalanine Hydroxylase With
Dihydrobiopterin (Bh2)
pdb|1KW0|A Chain A, Catalytic Domain Of Human Phenylalanine Hydroxylase
(Fe(Ii) ) In Complex With Tetrahydrobiopterin And
Thienylalanine
pdb|1MMK|A Chain A, Crystal Structure Of Ternary Complex Of The Catalytic
Domain Of Human Phenylalanine Hydroxylase ((Feii))
Complexed With Tetrahydrobiopterin And Thienylalanine
pdb|1MMT|A Chain A, Crystal Structure Of Ternary Complex Of The Catalytic
Domain Of Human Phenylalanine Hydroxylase (Fe(Ii))
Complexed With Tetrahydrobiopterin And Norleucine
Length = 325
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 318 GYWVSKIPSWRQGEEVSRTISLCTGMQSSTLAGLLATQ-FLG 358
G+ IP Q E+VS+ + CTG + +AGLL+++ FLG
Sbjct: 116 GFHEDNIP---QLEDVSQFLQTCTGFRLRPVAGLLSSRDFLG 154
>pdb|1PAH|A Chain A, Human Phenylalanine Hydroxylase Dimer, Residues 117-424
pdb|3PAH|A Chain A, Human Phenylalanine Hydroxylase Catalytic Domain Dimer
With Bound Adrenaline Inhibitor
pdb|4PAH|A Chain A, Human Phenylalanine Hydroxylase Catalytic Domain Dimer
With Bound Nor- Adrenaline Inhibitor
pdb|5PAH|A Chain A, Human Phenylalanine Hydroxylase Catalytic Domain Dimer
With Bound Dopamine Inhibitor
pdb|6PAH|A Chain A, Human Phenylalanine Hydroxylase Catalytic Domain Dimer
With Bound L- Dopa (3,4-Dihydroxyphenylalanine)
Inhibitor
Length = 308
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 318 GYWVSKIPSWRQGEEVSRTISLCTGMQSSTLAGLLATQ-FLG 358
G+ IP Q E+VS+ + CTG + +AGLL+++ FLG
Sbjct: 102 GFHEDNIP---QLEDVSQFLQTCTGFRLRPVAGLLSSRDFLG 140
>pdb|1TDW|A Chain A, Crystal Structure Of Double Truncated Human Phenylalanine
Hydroxylase Bh4-Responsive Pku Mutant A313t.
pdb|1TG2|A Chain A, Crystal Structure Of Phenylalanine Hydroxylase A313t
Mutant With 7,8-Dihydrobiopterin Bound
Length = 308
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 318 GYWVSKIPSWRQGEEVSRTISLCTGMQSSTLAGLLATQ-FLG 358
G+ IP Q E+VS+ + CTG + +AGLL+++ FLG
Sbjct: 102 GFHEDNIP---QLEDVSQFLQTCTGFRLRPVAGLLSSRDFLG 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,911,510
Number of Sequences: 62578
Number of extensions: 282749
Number of successful extensions: 706
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 704
Number of HSP's gapped (non-prelim): 8
length of query: 406
length of database: 14,973,337
effective HSP length: 101
effective length of query: 305
effective length of database: 8,652,959
effective search space: 2639152495
effective search space used: 2639152495
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (25.0 bits)