Query 037575
Match_columns 406
No_of_seqs 211 out of 1457
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 13:41:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037575.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037575hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0385 Predicted Na+-dependen 100.0 3.6E-52 7.8E-57 404.5 36.4 302 84-389 8-310 (319)
2 TIGR00841 bass bile acid trans 100.0 1E-43 2.2E-48 347.3 31.1 272 114-390 7-282 (286)
3 TIGR00832 acr3 arsenical-resis 100.0 3.1E-42 6.8E-47 342.3 33.4 283 85-369 6-313 (328)
4 PF13593 DUF4137: SBF-like CPA 100.0 1.6E-38 3.5E-43 313.8 34.0 295 89-385 1-313 (313)
5 COG0798 ACR3 Arsenite efflux p 100.0 1E-30 2.3E-35 253.7 33.3 304 79-384 4-330 (342)
6 PF01758 SBF: Sodium Bile acid 100.0 6.8E-29 1.5E-33 228.3 19.4 179 119-297 2-186 (187)
7 KOG2718 Na+-bile acid cotransp 99.9 9.2E-27 2E-31 231.4 12.9 275 90-367 87-364 (371)
8 TIGR00946 2a69 he Auxin Efflux 99.6 3.3E-15 7.2E-20 148.4 15.4 192 33-227 95-320 (321)
9 PRK09903 putative transporter 99.6 4.8E-14 1E-18 139.8 14.4 188 36-227 95-310 (314)
10 COG0679 Predicted permeases [G 99.5 2.7E-13 5.9E-18 134.3 13.6 190 38-229 96-309 (311)
11 PF03547 Mem_trans: Membrane t 99.0 2.8E-09 6.1E-14 108.0 12.2 135 89-224 243-385 (385)
12 KOG4821 Predicted Na+-dependen 98.8 6.4E-09 1.4E-13 95.6 6.6 183 82-264 15-220 (287)
13 PRK12460 2-keto-3-deoxyglucona 98.8 3.6E-07 7.9E-12 89.5 18.6 286 83-391 3-311 (312)
14 KOG2718 Na+-bile acid cotransp 98.2 1.6E-06 3.4E-11 87.3 5.1 230 122-360 51-288 (371)
15 PF03812 KdgT: 2-keto-3-deoxyg 98.2 0.00022 4.9E-09 69.9 19.5 276 92-388 16-314 (314)
16 TIGR00793 kdgT 2-keto-3-deoxyg 98.0 0.00016 3.6E-09 70.5 15.5 284 83-388 3-314 (314)
17 PRK05274 2-keto-3-deoxyglucona 97.9 0.0022 4.9E-08 64.1 20.2 287 83-393 5-321 (326)
18 PF05145 AmoA: Putative ammoni 97.8 0.026 5.7E-07 56.3 26.3 105 122-230 32-137 (318)
19 COG3180 AbrB Putative ammonia 97.7 0.024 5.2E-07 56.9 24.5 100 126-229 69-169 (352)
20 PRK03562 glutathione-regulated 97.1 0.25 5.4E-06 53.9 25.6 98 117-218 60-162 (621)
21 PRK03659 glutathione-regulated 96.9 0.66 1.4E-05 50.4 26.6 97 117-217 60-161 (601)
22 PRK10669 putative cation:proto 96.7 0.96 2.1E-05 48.5 26.0 102 116-222 60-167 (558)
23 PF03547 Mem_trans: Membrane t 96.7 0.05 1.1E-06 55.1 15.1 123 245-374 7-135 (385)
24 COG0475 KefB Kef-type K+ trans 96.6 1.1 2.4E-05 46.2 26.5 116 116-235 61-183 (397)
25 TIGR03082 Gneg_AbrB_dup membra 96.6 0.16 3.4E-06 45.4 15.8 105 118-226 50-155 (156)
26 PF03601 Cons_hypoth698: Conse 96.2 0.77 1.7E-05 45.6 19.9 134 91-228 29-170 (305)
27 PRK12460 2-keto-3-deoxyglucona 95.8 0.1 2.3E-06 51.6 11.3 164 55-227 127-303 (312)
28 PLN03159 cation/H(+) antiporte 95.5 5.7 0.00012 44.9 26.4 106 116-226 107-224 (832)
29 PF04172 LrgB: LrgB-like famil 95.4 0.55 1.2E-05 44.3 14.1 91 135-227 68-158 (215)
30 TIGR00659 conserved hypothetic 95.3 0.52 1.1E-05 44.7 13.8 91 135-227 78-168 (226)
31 PRK05326 potassium/proton anti 95.3 5.3 0.00012 42.9 31.9 146 115-267 61-215 (562)
32 TIGR00932 2a37 transporter, mo 94.7 4.2 9.2E-05 39.1 24.2 146 115-267 45-197 (273)
33 PRK04288 antiholin-like protei 94.7 1 2.3E-05 42.9 14.1 89 137-227 86-174 (232)
34 PF05145 AmoA: Putative ammoni 94.6 1.6 3.4E-05 43.7 15.8 103 123-229 212-315 (318)
35 TIGR00946 2a69 he Auxin Efflux 94.5 0.39 8.5E-06 47.7 11.4 113 244-361 10-128 (321)
36 PRK10711 hypothetical protein; 94.4 0.59 1.3E-05 44.5 11.6 90 136-227 80-169 (231)
37 TIGR00698 conserved hypothetic 93.3 10 0.00022 38.3 18.8 106 119-228 66-176 (335)
38 PF03977 OAD_beta: Na+-transpo 93.2 10 0.00022 38.0 19.6 100 124-229 75-175 (360)
39 TIGR00844 c_cpa1 na(+)/h(+) an 92.9 18 0.00038 40.7 21.2 26 119-144 77-102 (810)
40 COG2855 Predicted membrane pro 92.8 10 0.00023 38.0 17.7 134 91-228 40-179 (334)
41 COG4651 RosB Kef-type K+ trans 92.8 11 0.00024 37.5 20.8 121 101-228 43-176 (408)
42 TIGR03136 malonate_biotin Na+- 91.8 16 0.00035 37.1 18.5 101 123-229 110-212 (399)
43 COG1346 LrgB Putative effector 91.1 2.6 5.7E-05 40.0 10.7 88 135-227 81-171 (230)
44 TIGR00793 kdgT 2-keto-3-deoxyg 90.4 3.9 8.5E-05 40.5 11.6 97 40-140 111-222 (314)
45 PF03601 Cons_hypoth698: Conse 90.0 2 4.4E-05 42.7 9.5 134 245-384 27-170 (305)
46 COG3180 AbrB Putative ammonia 88.9 17 0.00038 36.8 15.1 103 122-228 244-347 (352)
47 PF03616 Glt_symporter: Sodium 87.1 38 0.00082 34.6 23.5 178 83-263 25-242 (368)
48 TIGR01109 Na_pump_decarbB sodi 86.0 40 0.00086 33.9 15.4 100 124-229 69-175 (354)
49 PRK03562 glutathione-regulated 85.7 20 0.00042 39.3 14.7 97 123-226 276-378 (621)
50 PRK15086 ethanolamine utilizat 85.4 46 0.00099 33.9 17.9 50 212-262 143-192 (372)
51 PF03956 DUF340: Membrane prot 85.4 4.7 0.0001 37.3 8.4 138 248-390 2-141 (191)
52 PRK15477 oxaloacetate decarbox 84.6 51 0.0011 33.8 16.2 101 123-229 139-246 (433)
53 PRK15476 oxaloacetate decarbox 84.5 51 0.0011 33.7 16.2 101 123-229 139-246 (433)
54 PRK15475 oxaloacetate decarbox 83.9 54 0.0012 33.6 16.2 101 123-229 139-246 (433)
55 PF03812 KdgT: 2-keto-3-deoxyg 82.8 7.8 0.00017 38.5 9.0 98 40-140 111-222 (314)
56 PRK03659 glutathione-regulated 81.5 59 0.0013 35.4 16.2 97 123-226 273-375 (601)
57 KOG2722 Predicted membrane pro 80.6 2.4 5.2E-05 43.0 4.7 139 88-227 246-403 (408)
58 PF05684 DUF819: Protein of un 80.6 73 0.0016 32.7 28.6 108 118-227 58-168 (378)
59 TIGR00831 a_cpa1 Na+/H+ antipo 80.3 88 0.0019 33.5 25.9 26 117-142 52-77 (525)
60 PRK02830 Na(+)-translocating N 79.3 55 0.0012 30.6 13.1 85 202-286 39-131 (202)
61 PF06826 Asp-Al_Ex: Predicted 78.0 25 0.00054 31.9 10.1 54 299-356 82-136 (169)
62 PRK04288 antiholin-like protei 77.1 57 0.0012 31.2 12.6 90 287-383 81-174 (232)
63 PRK01061 Na(+)-translocating N 75.5 80 0.0017 30.4 13.0 100 181-284 29-138 (244)
64 PRK10711 hypothetical protein; 74.0 23 0.00051 33.8 9.1 91 287-384 76-170 (231)
65 COG1346 LrgB Putative effector 72.5 29 0.00064 33.0 9.3 92 286-384 77-172 (230)
66 TIGR01943 rnfA electron transp 72.5 82 0.0018 29.2 12.9 99 181-285 21-119 (190)
67 PF03956 DUF340: Membrane prot 72.4 82 0.0018 29.1 17.0 127 94-226 4-137 (191)
68 TIGR00698 conserved hypothetic 71.1 37 0.0008 34.3 10.3 94 248-344 35-131 (335)
69 PRK05274 2-keto-3-deoxyglucona 70.9 22 0.00048 35.7 8.6 15 246-260 301-315 (326)
70 PRK03818 putative transporter; 70.8 28 0.0006 37.6 9.9 101 248-352 34-138 (552)
71 TIGR00659 conserved hypothetic 70.6 32 0.00069 32.8 9.1 90 287-383 75-168 (226)
72 PRK09903 putative transporter 69.9 1.2E+02 0.0025 29.9 27.6 233 117-359 41-284 (314)
73 PRK12456 Na(+)-translocating N 69.7 84 0.0018 29.4 11.5 84 202-285 40-127 (199)
74 PF04172 LrgB: LrgB-like famil 69.4 29 0.00062 32.8 8.5 91 287-384 65-159 (215)
75 PRK05151 electron transport co 67.7 1.1E+02 0.0023 28.6 13.3 99 181-285 22-120 (193)
76 COG0786 GltS Na+/glutamate sym 67.5 1.6E+02 0.0034 30.5 18.0 105 118-226 68-183 (404)
77 COG2855 Predicted membrane pro 67.4 34 0.00073 34.5 9.0 83 247-333 40-123 (334)
78 PRK04972 putative transporter; 66.9 36 0.00079 36.7 9.8 71 121-192 66-137 (558)
79 TIGR01940 nqrE NADH:ubiquinone 66.0 1.2E+02 0.0025 28.4 12.8 102 181-286 21-130 (200)
80 PRK10669 putative cation:proto 62.7 2.2E+02 0.0048 30.5 15.9 98 122-226 282-386 (558)
81 COG0679 Predicted permeases [G 60.5 1.8E+02 0.0039 28.7 26.5 229 117-359 41-281 (311)
82 PF00999 Na_H_Exchanger: Sodiu 59.1 0.9 2E-05 45.8 -3.9 138 115-258 50-197 (380)
83 TIGR03802 Asp_Ala_antiprt aspa 56.5 2.9E+02 0.0063 29.9 14.5 54 126-181 459-515 (562)
84 TIGR00210 gltS sodium--glutama 56.1 2.5E+02 0.0055 29.0 26.9 139 83-225 25-181 (398)
85 TIGR03802 Asp_Ala_antiprt aspa 55.7 2.6E+02 0.0056 30.3 13.9 69 120-189 63-132 (562)
86 PLN03159 cation/H(+) antiporte 54.5 2.7E+02 0.0058 31.8 14.3 103 123-227 329-436 (832)
87 TIGR00840 b_cpa1 sodium/hydrog 54.5 3.1E+02 0.0068 29.7 21.0 49 117-165 69-118 (559)
88 TIGR00210 gltS sodium--glutama 52.1 2E+02 0.0044 29.7 11.9 84 305-391 98-190 (398)
89 COG1883 OadB Na+-transporting 51.3 1.1E+02 0.0023 30.5 9.0 100 124-229 90-190 (375)
90 PRK01030 tetrahydromethanopter 51.2 2.4E+02 0.0052 27.4 11.2 42 307-352 168-209 (264)
91 PF06826 Asp-Al_Ex: Predicted 45.6 2.3E+02 0.005 25.6 14.6 82 119-201 58-141 (169)
92 TIGR00341 conserved hypothetic 43.6 3.6E+02 0.0078 27.2 14.0 63 89-153 115-180 (325)
93 PF07854 DUF1646: Protein of u 42.0 2.3E+02 0.0051 28.6 9.9 36 367-402 185-220 (347)
94 PRK04972 putative transporter; 42.0 4.8E+02 0.01 28.2 15.2 22 84-105 6-27 (558)
95 PF02508 Rnf-Nqr: Rnf-Nqr subu 41.8 2.9E+02 0.0062 25.5 13.3 36 249-284 82-117 (190)
96 PF12794 MscS_TM: Mechanosensi 41.4 3.8E+02 0.0083 26.9 15.2 92 199-290 39-147 (340)
97 PRK09824 PTS system beta-gluco 41.0 2.8E+02 0.006 30.6 11.3 33 155-187 154-187 (627)
98 PF01943 Polysacc_synt: Polysa 38.6 3.1E+02 0.0067 25.0 11.7 63 201-265 4-68 (273)
99 KOG2722 Predicted membrane pro 38.5 1.9E+02 0.0042 29.7 8.8 72 306-379 81-162 (408)
100 COG3329 Predicted permease [Ge 37.7 1.1E+02 0.0025 30.5 7.0 51 92-143 220-274 (372)
101 TIGR00783 ccs citrate carrier 36.8 4.7E+02 0.01 26.6 17.5 100 123-225 33-142 (347)
102 PF03390 2HCT: 2-hydroxycarbox 36.5 4.3E+02 0.0093 27.6 11.3 136 83-220 265-408 (414)
103 PRK09796 PTS system cellobiose 35.0 4.2E+02 0.0092 28.1 11.3 33 155-187 158-191 (472)
104 PRK03818 putative transporter; 30.5 7.2E+02 0.016 26.8 15.5 72 120-192 66-138 (552)
105 PF05684 DUF819: Protein of un 30.0 6.2E+02 0.013 25.9 14.5 106 98-210 248-355 (378)
106 COG3263 NhaP-type Na+/H+ and K 29.9 7E+02 0.015 26.6 21.7 82 118-203 65-146 (574)
107 COG5505 Predicted integral mem 29.8 3E+02 0.0065 27.7 8.4 130 276-406 63-199 (384)
108 TIGR01948 rnfE electron transp 28.1 5E+02 0.011 24.2 13.1 36 249-284 75-110 (196)
109 PF03616 Glt_symporter: Sodium 27.4 6.7E+02 0.015 25.5 15.2 80 307-389 100-188 (368)
110 TIGR00783 ccs citrate carrier 26.9 5.3E+02 0.011 26.3 9.9 57 118-176 240-297 (347)
111 PF13955 Fst_toxin: Toxin Fst, 26.4 92 0.002 18.4 2.6 16 245-260 2-17 (21)
112 COG2223 NarK Nitrate/nitrite t 26.1 7.6E+02 0.016 25.8 11.0 28 242-269 50-77 (417)
113 PF04346 EutH: Ethanolamine ut 25.5 7.4E+02 0.016 25.3 17.8 51 212-263 142-192 (354)
114 PF10997 DUF2837: Protein of u 25.3 4.4E+02 0.0095 25.6 8.6 28 202-229 70-97 (254)
115 PF05982 DUF897: Domain of unk 25.2 7.2E+02 0.016 25.1 20.6 195 129-333 42-266 (327)
116 PRK09292 Na(+)-translocating N 24.8 5.9E+02 0.013 24.0 13.2 36 249-284 82-117 (209)
117 PF11120 DUF2636: Protein of u 23.5 2.1E+02 0.0045 21.7 4.8 33 237-269 4-36 (62)
118 TIGR00844 c_cpa1 na(+)/h(+) an 22.7 7.2E+02 0.016 28.3 10.8 75 124-198 304-381 (810)
119 PRK05326 potassium/proton anti 20.7 8.7E+02 0.019 26.0 10.9 45 126-172 285-329 (562)
120 COG0475 KefB Kef-type K+ trans 20.6 9.3E+02 0.02 24.7 12.6 71 126-200 284-354 (397)
121 TIGR01625 YidE_YbjL_dupl AspT/ 20.2 3.8E+02 0.0082 23.8 6.7 102 250-355 27-136 (154)
122 COG1970 MscL Large-conductance 20.0 4.4E+02 0.0095 22.9 6.6 82 83-168 7-93 (130)
No 1
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=100.00 E-value=3.6e-52 Score=404.52 Aligned_cols=302 Identities=30% Similarity=0.457 Sum_probs=286.8
Q ss_pred HHHHHhHHHHHHHHHHHHHhhccchhhHhhhhhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Q 037575 84 SQVLSAMLPFVVALTAVAALAQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGV 163 (406)
Q Consensus 84 ~~~l~~~~~~~~~~~~~lgl~~P~~~~~l~~~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~ 163 (406)
.++..+.+++|+++.+.++...|+.+.++ +.++...+..+||.+|++++.+|+++..+||+.++.++.+||++||++++
T Consensus 8 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~-~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~ 86 (319)
T COG0385 8 SRDPFKIFLLWVVLLAAIAPIFPETFGWL-GSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLAL 86 (319)
T ss_pred hHhHHHHHHHHHHHHHHHHHhccccchhh-hHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 35566778999999999999999999999 46788999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCChHHHHHHHHHhcCchhhHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccChHHHHHHH
Q 037575 164 LIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIASVLITPLLTGLLIGSVIPVDAVAMSKSI 243 (406)
Q Consensus 164 ~l~~~~~l~~~~~~GlvL~a~~P~~~~s~v~t~~~gGd~ala~~~~~~stlls~~~~Pl~l~ll~g~~v~vd~~~l~~~l 243 (406)
++++.+++||+++.|+++++|||+|+.|+++|+++|||++++++++.+||+++++++|+++.++.|+.+++|.+++++++
T Consensus 87 ~~~~~~~l~~~l~~Gl~ll~~~Pggv~S~~~t~lAkGnValsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i 166 (319)
T COG0385 87 LLAKLFPLPPELAVGLLLLGCCPGGVASNAMTYLAKGNVALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSI 166 (319)
T ss_pred HHHHHcCCCHHHHHhHHheeeCCCchhHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhHhHHHhHhcccchHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 037575 244 LQVVLVPVALGLGLNTYAKPVVSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSK 323 (406)
Q Consensus 244 l~~vllPl~lG~llr~~~p~~~~~i~~~l~~is~l~lllii~~~~~~n~~~i~~~~~~~i~~~~lll~~~~f~lG~~l~r 323 (406)
++++++|..+|+++|++.|++.++.++.++.++..+++++++..++.+.++..+. ...+.+.+.+++.++|..||+.+|
T Consensus 167 ~~~vllP~~LG~~~r~~~~~~~~~~~~~l~~vs~~~illIv~~~~s~~~~~~~~~-~~~v~~~v~~~n~lg~~~gy~~ar 245 (319)
T COG0385 167 LLQVLLPFVLGQLLRPLLPKWVERLKKALPPVSVLSILLIVYAAFSAAVENGIWS-GLLIFVAVILHNLLGLLLGYFGAR 245 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998888775 456777788888999999999999
Q ss_pred ccCCCCCccceeeeeeecccccHHHHHHHHHHhcC-CcccHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 037575 324 IPSWRQGEEVSRTISLCTGMQSSTLAGLLATQFLG-SSQAVPPACSVIAMAIMGLCLASFWGSGSRI 389 (406)
Q Consensus 324 ~~~~~~~~~~~~a~~~~~g~rN~~Lai~lA~~~f~-~~~alp~~~y~v~q~i~~~~la~~~~~~~~~ 389 (406)
+ +|+|++|++|+++|+|+||.++|+.+|..||+ |..++|.++|++||++.+++++++|+||+.+
T Consensus 246 ~--~g~~~a~~iti~ie~g~qn~~lg~alA~~f~~~~~~alP~aif~~~q~~~~a~la~~~~~~~~~ 310 (319)
T COG0385 246 L--LGFDKADEITIAIEGGMQNLGLGAALAAAFFGNPLMALPLAIFSVWQNMSGAVLAGLYARRILK 310 (319)
T ss_pred H--hCCChhheeeEEEeeccccHHHHHHHHHhcCCCchhHhHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9 89999999999999999999999999999999 8899999999999999999999999998643
No 2
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=100.00 E-value=1e-43 Score=347.28 Aligned_cols=272 Identities=27% Similarity=0.401 Sum_probs=252.7
Q ss_pred hhhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCchhhHHHH
Q 037575 114 KELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSY 193 (406)
Q Consensus 114 ~~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~v 193 (406)
+.+..+.++.+||.+|++++.+|+++..|||+.+..+++.|++++|++++++++.++++++++.|+++++|||+++.+++
T Consensus 7 ~~~~~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL~~~~P~~~~s~v 86 (286)
T TIGR00841 7 STILLILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLIVGCCPGGTASNV 86 (286)
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHheeeCCCchHHHH
Confidence 35566779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc----cChHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHhHh
Q 037575 194 ASFLSKGDVAVSILLSSSTTIASVLITPLLTGLLIGSVIP----VDAVAMSKSILQVVLVPVALGLGLNTYAKPVVSFLR 269 (406)
Q Consensus 194 ~t~~~gGd~ala~~~~~~stlls~~~~Pl~l~ll~g~~v~----vd~~~l~~~ll~~vllPl~lG~llr~~~p~~~~~i~ 269 (406)
|++++|||.++++.+++++|+++++++|+++.++.+...+ +|..+++++ +.++++|+++|+++|++.|++.++.+
T Consensus 87 ~t~~~~gn~~la~~~~~~stlls~vt~Pl~l~~~~~~~~~~~~~v~~~~i~~~-~~~v~vPl~lG~~~r~~~p~~~~~~~ 165 (286)
T TIGR00841 87 FTYLLKGDMALSISMTTCSTLLALGMMPLLLYIYAKMWVDGTLVVPYLGIGLS-LVAVLIPVSIGMLVKHKLPQIAKIIL 165 (286)
T ss_pred HHHHhCCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999999999999999999999999999875444 999999999 99999999999999999999888888
Q ss_pred cccchHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccceeeeeeecccccHHHH
Q 037575 270 PVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIPSWRQGEEVSRTISLCTGMQSSTLA 349 (406)
Q Consensus 270 ~~l~~is~l~lllii~~~~~~n~~~i~~~~~~~i~~~~lll~~~~f~lG~~l~r~~~~~~~~~~~~a~~~~~g~rN~~La 349 (406)
+ .+.++.+.+.+++...++.|.+.+.+. .+.+.+++++++.++|.+||+++|. +|.++++++++++|+|+||.++|
T Consensus 166 ~-~~~~s~~~l~liv~~~~~~~~~~i~~~-~~~~~~~~~ll~~~~~~~g~~~a~~--~~l~~~~~~t~~~~~g~qN~~la 241 (286)
T TIGR00841 166 K-VGLISVFLLSVIIAVVGGINVENLATI-GPLLLLVGILLPLAGFLLGYLLAKL--AGLPWARCRTISIEVGMQNSQLC 241 (286)
T ss_pred h-CchHHHHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHH--hCCCHhhheeeeeeeecccHHHH
Confidence 8 899999988888877778888877664 5678888999999999999999998 88899999999999999999999
Q ss_pred HHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 037575 350 GLLATQFLGSSQAVPPACSVIAMAIMGLCLASFWGSGSRIR 390 (406)
Q Consensus 350 i~lA~~~f~~~~alp~~~y~v~q~i~~~~la~~~~~~~~~~ 390 (406)
+++|.++|+|+.++|+++|.++|+++++.++.+|+|+.++.
T Consensus 242 l~la~~~f~~~~a~~~~~~~v~~~~~~~~~a~~~~~~~~~~ 282 (286)
T TIGR00841 242 STIAQLSFSPEVAVPSAIFPLIYALFQLAFALLFLIIHFCY 282 (286)
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999876653
No 3
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=100.00 E-value=3.1e-42 Score=342.31 Aligned_cols=283 Identities=19% Similarity=0.231 Sum_probs=241.8
Q ss_pred HHHHhHHHHHHHHHHHHHhhccchhhHhhhh----h---HHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHH
Q 037575 85 QVLSAMLPFVVALTAVAALAQPSTFTWVSKE----L---YAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYII 157 (406)
Q Consensus 85 ~~l~~~~~~~~~~~~~lgl~~P~~~~~l~~~----~---~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l 157 (406)
+++..+....++.+.++|+..|+.+++.... . ....++.+||.+|++++++|+++.+||||.+..+++.|+++
T Consensus 6 ~~~~~~~~~~~i~~~~~g~~~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi 85 (328)
T TIGR00832 6 RYLTLWIFLAIAAGVGLGVLFPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWII 85 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHH
Confidence 3334444444455668899999998877321 1 12345678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc-CCChHHHHHHHHHhcCchhhHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhC-------
Q 037575 158 KPILGVLIAKAF-GIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIASVLITPLLTGLLIG------- 229 (406)
Q Consensus 158 ~Plla~~l~~~~-~l~~~~~~GlvL~a~~P~~~~s~v~t~~~gGd~ala~~~~~~stlls~~~~Pl~l~ll~g------- 229 (406)
+|+++|++++.+ +++|+++.|+++++||||+++|++||+++|||+++++.+|.++|+++++++|++++++.|
T Consensus 86 ~Plla~~l~~l~~~~~p~l~~GliLv~~~Pgg~~S~v~T~lAkGnvalsv~lt~~stLl~~~~~P~l~~ll~~~~~~~~~ 165 (328)
T TIGR00832 86 GPFLMFLLAWLFLRDLFEYIAGLILLGLARCIAMVFVWNQLAKGDPEYTLVLVAVNSLFQVFLYAPLAWLLLGVSPIWLG 165 (328)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhcchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 999999999975 999999999999999999999999999999999999999999999999999999998887
Q ss_pred -CccccChHHHHHHHHHHHHHHHHHHHHHHhhhHhH-----HH-hHhcccchHHHHHHHHHHHHHHHhhhhHHhhhhh--
Q 037575 230 -SVIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPV-----VS-FLRPVMPFVAMICTSLCIGSPLAINRSQILSIEG-- 300 (406)
Q Consensus 230 -~~v~vd~~~l~~~ll~~vllPl~lG~llr~~~p~~-----~~-~i~~~l~~is~l~lllii~~~~~~n~~~i~~~~~-- 300 (406)
+.+++|..+++++++.++++|+++|+.+|++.|++ .+ +.++.++..+.+++++++...++.|++.+.+...
T Consensus 166 ~~~v~v~~~~~~~~l~~~v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~iv~~~~~~~~~~i~~~~~~i 245 (328)
T TIGR00832 166 LTVITVPWETIAKSVLIYLGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSLIALLFTIVLLFAFQGETIIELPLDI 245 (328)
T ss_pred cceeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhChHHH
Confidence 35789999999999999999999999999999953 33 7778888888888888888888889888876422
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCccceeeeeeecccccHHHHHHHHHHhcCC-cccHHHHHHH
Q 037575 301 LQLVLPVLTFHAVAFAVGYWVSKIPSWRQGEEVSRTISLCTGMQSSTLAGLLATQFLGS-SQAVPPACSV 369 (406)
Q Consensus 301 ~~i~~~~lll~~~~f~lG~~l~r~~~~~~~~~~~~a~~~~~g~rN~~Lai~lA~~~f~~-~~alp~~~y~ 369 (406)
..+..++++++.++|.+||+++|. +|.+++|++|+++|+|+||.++|+.+|.++|++ +.+.++++|.
T Consensus 246 ~~~~~~v~l~~~~~~~lg~~~~r~--~~l~~~~~~a~~~e~g~qN~~lai~lA~~~f~~~~~~a~~~~~~ 313 (328)
T TIGR00832 246 ALIAIPLLIYFYIMFFLTFALAKK--LGLPYSITAPAAFTGASNNFELAIAVAISLFGLNSGAALATVVG 313 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hCcChhhhhhheehhhhhhHHHHHHHHHHhCCCCcccHHHHHhh
Confidence 234456778999999999999999 889999999999999999999999999999986 3444444443
No 4
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=100.00 E-value=1.6e-38 Score=313.83 Aligned_cols=295 Identities=19% Similarity=0.255 Sum_probs=262.1
Q ss_pred hHHHHHHHHHHHHHhhccchhhH---hh-hhhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 037575 89 AMLPFVVALTAVAALAQPSTFTW---VS-KELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVL 164 (406)
Q Consensus 89 ~~~~~~~~~~~~lgl~~P~~~~~---l~-~~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~ 164 (406)
+|+++.+.+++++|+..|..+.. .. +....+.++.++|..|++++.+|+++..||+|.++.+...+++++|+++++
T Consensus 1 ~~fl~~l~~ai~la~~~P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~ 80 (313)
T PF13593_consen 1 QWFLLGLLLAILLAYLFPAPGAAGGVIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFG 80 (313)
T ss_pred CchHHHHHHHHHHHHHcCcccccCCccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 47888999999999999988763 31 234567788888999999999999999999999999999999999999999
Q ss_pred HHHHc--CCChHHHHHHHHHhcCchhhHHH-HHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHh-CCccccChHHHH
Q 037575 165 IAKAF--GIPQIFYAGFVLTACVSGAQLSS-YASFLSKGDVAVSILLSSSTTIASVLITPLLTGLLI-GSVIPVDAVAMS 240 (406)
Q Consensus 165 l~~~~--~l~~~~~~GlvL~a~~P~~~~s~-v~t~~~gGd~ala~~~~~~stlls~~~~Pl~l~ll~-g~~v~vd~~~l~ 240 (406)
+.+++ ..+++++.|+++++|+|++..|+ +||+.+|||.+.++..++++|+++++++|+++.++. ++..++|..+++
T Consensus 81 ~~~l~~~~~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~~~~ 160 (313)
T PF13593_consen 81 LSRLFPAFLPPELALGLLILACLPTTVSSSVVLTRLAGGNVALALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYASVL 160 (313)
T ss_pred HHHHhhccCCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHHHHH
Confidence 99887 46889999999999999998887 599999999999999999999999999999999999 688999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhHHHhHhcccchHHHHHHHHHHHHHHHhh-hhHHhh-hh---hHHHHHHHHHHHHHHH
Q 037575 241 KSILQVVLVPVALGLGLNTYAKPVVSFLRPVMPFVAMICTSLCIGSPLAIN-RSQILS-IE---GLQLVLPVLTFHAVAF 315 (406)
Q Consensus 241 ~~ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~is~l~lllii~~~~~~n-~~~i~~-~~---~~~i~~~~lll~~~~f 315 (406)
.++...+++|+++|+++|++.+++.+|.++.++.++..+++++++..++.. .+.+.+ .. ...+....+.++...+
T Consensus 161 ~~L~~~vllP~~~Gq~~r~~~~~~~~~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 240 (313)
T PF13593_consen 161 IKLVLTVLLPLVLGQLLRRWVPKWVARHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLVVL 240 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888665 222221 11 1234456778888899
Q ss_pred HHHHHHhcccCCCCCccceeeeeeecccccHHHHHHHHHHhcCC-----cccHHHHHHHHHHHHHHHHHHHHHhc
Q 037575 316 AVGYWVSKIPSWRQGEEVSRTISLCTGMQSSTLAGLLATQFLGS-----SQAVPPACSVIAMAIMGLCLASFWGS 385 (406)
Q Consensus 316 ~lG~~l~r~~~~~~~~~~~~a~~~~~g~rN~~Lai~lA~~~f~~-----~~alp~~~y~v~q~i~~~~la~~~~~ 385 (406)
.++++.+|. ++++++|++++.|++++||.++|+.++...|++ ...+|.++||..|.++++++|.+|+|
T Consensus 241 ~~~~~~~r~--~~~~~~d~iA~~F~gs~Ksl~~gvpl~~~lf~~~~~~~~~~lP~~iyh~~Ql~~~s~la~~~~r 313 (313)
T PF13593_consen 241 VLGWLAARL--LGFSRPDRIAVLFCGSQKSLALGVPLASILFPGHPDLGLIVLPLMIYHPLQLFVGSFLASRLAR 313 (313)
T ss_pred HHHHHHHhh--cCCChhhEEEEEEEcCcCcchhHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999998 899999999999999999999999999999975 35899999999999999999999986
No 5
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-30 Score=253.67 Aligned_cols=304 Identities=20% Similarity=0.247 Sum_probs=260.4
Q ss_pred ccccHHHHHHhHHHHHHHHHHHH----HhhccchhhHhh-------hhhHHHHHHHHHHHhcccCCHHHHHHHhcCchhH
Q 037575 79 ARYDSSQVLSAMLPFVVALTAVA----ALAQPSTFTWVS-------KELYAPALGGIMLSIGIRLSIEDFALAFKRPLPL 147 (406)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~l----gl~~P~~~~~l~-------~~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~ 147 (406)
++.+..+|++|+++.|+..+.++ |...|+..+.+. +..+.+.+..+|+.+.+++++++++++.+++|.+
T Consensus 4 ~~~k~l~~~dk~l~~wv~l~i~~Gi~lG~~~p~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L 83 (342)
T COG0798 4 KEKKKLSFLDKYLTLWVFLAIAIGILLGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPL 83 (342)
T ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHH
Confidence 34457899999999988877766 567788544432 1235678888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCChHHHHHHHHHhcCchhhHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 037575 148 SVGFVAQYIIKPILGVLIAKAF-GIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIASVLITPLLTGL 226 (406)
Q Consensus 148 ~~~l~~~~~l~Plla~~l~~~~-~l~~~~~~GlvL~a~~P~~~~s~v~t~~~gGd~ala~~~~~~stlls~~~~Pl~l~l 226 (406)
...+..|+++.|+++++++++| +..|++..|+++.+..||..++.+|+++++||.++++..+.++.++++++.|.+.++
T Consensus 84 ~lsL~~Nwii~P~lm~~la~~fl~~~pey~~GlILlglApC~aMVivw~~La~Gd~~~tlv~Va~n~l~qiv~y~~~~~~ 163 (342)
T COG0798 84 ILSLFVNWIIGPLLMFALAWFFLPDEPEYRAGLILLGLAPCIAMVIVWSGLAKGDRELTLVLVAFNSLLQIVLYAPLGKF 163 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhhhHHHHHHHHhhccCcHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999975 777899999999999999999999999999999999999999999999999999999
Q ss_pred HhCCc-cccChHHHHHHHHHHHHHHHHHHHHHHhhhHhH------HHhHhcccchHHHHHHHHHHHHHHHhhhhHHhhhh
Q 037575 227 LIGSV-IPVDAVAMSKSILQVVLVPVALGLGLNTYAKPV------VSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIE 299 (406)
Q Consensus 227 l~g~~-v~vd~~~l~~~ll~~vllPl~lG~llr~~~p~~------~~~i~~~l~~is~l~lllii~~~~~~n~~~i~~~~ 299 (406)
+.|.. ++++++.+.++++..+.+|+++|++.|++..++ .++..|.+++++.+++++.+...++.+.+++.+++
T Consensus 164 ~l~v~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~kg~~~~~~~f~p~ispi~ligLl~TivliF~~qg~~Iv~~p 243 (342)
T COG0798 164 FLGVISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKKKGREWYESRFLPKISPIALIGLLLTIVLIFAFQGEQIVEQP 243 (342)
T ss_pred HHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcChHHHHHHHHHHHHHHHHhHHHHHhCh
Confidence 98864 899999999999999999999999999986543 25678889999999999999999999999998863
Q ss_pred h--HHHHHHHHHHHHHHHHHHHHHhcccCCCCCccceeeeeeecccccHHHHHHHHHHhcC--CcccHHHHHHHHHHHHH
Q 037575 300 G--LQLVLPVLTFHAVAFAVGYWVSKIPSWRQGEEVSRTISLCTGMQSSTLAGLLATQFLG--SSQAVPPACSVIAMAIM 375 (406)
Q Consensus 300 ~--~~i~~~~lll~~~~f~lG~~l~r~~~~~~~~~~~~a~~~~~g~rN~~Lai~lA~~~f~--~~~alp~~~y~v~q~i~ 375 (406)
. ..++++.++.....+.++|.++|. .|.+.+++.++++.++.+|..+|+++|.+.|+ +.+++..++..+.+..+
T Consensus 244 ~~i~liAIpl~iy~~~~~~i~~~i~k~--lgl~y~~~~~~~ft~aSNnfeLAiAvAi~lfG~~s~aA~a~vigpLvEVpv 321 (342)
T COG0798 244 LDILLIAIPLLIYFLLMFFISYFIAKA--LGLPYEDAAALVFTGASNNFELAIAVAIALFGLTSGAALATVVGPLVEVPV 321 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCChhhhhceeeeeccccHHHHHHHHHHhcCccccchhhhhccchhhHHH
Confidence 2 234466667777889999999999 78888999999999999999999999999996 34677777777777776
Q ss_pred HHHHHHHHh
Q 037575 376 GLCLASFWG 384 (406)
Q Consensus 376 ~~~la~~~~ 384 (406)
--.++..+.
T Consensus 322 ml~lV~v~~ 330 (342)
T COG0798 322 MLGLVKVAL 330 (342)
T ss_pred HHHHHHHHH
Confidence 555555444
No 6
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=99.96 E-value=6.8e-29 Score=228.31 Aligned_cols=179 Identities=32% Similarity=0.475 Sum_probs=156.0
Q ss_pred HHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-HHcCCChHHHHHHHHHhcCchhhHHHHHHHH
Q 037575 119 PALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIA-KAFGIPQIFYAGFVLTACVSGAQLSSYASFL 197 (406)
Q Consensus 119 ~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~-~~~~l~~~~~~GlvL~a~~P~~~~s~v~t~~ 197 (406)
..++.+||.+|++++++|+++..|||+.+..+++.|++++|+++++++ ..++++++.+.|+++++|||++..+++||++
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl~l~~~~P~~~~s~~~t~l 81 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGLLLVAACPGGPASNVFTYL 81 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHHHS-B-THHHHHHHH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999 7889999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC---hHHHHHHHHHHHHHHHHHHHHHHhhhH--hHHHhHhccc
Q 037575 198 SKGDVAVSILLSSSTTIASVLITPLLTGLLIGSVIPVD---AVAMSKSILQVVLVPVALGLGLNTYAK--PVVSFLRPVM 272 (406)
Q Consensus 198 ~gGd~ala~~~~~~stlls~~~~Pl~l~ll~g~~v~vd---~~~l~~~ll~~vllPl~lG~llr~~~p--~~~~~i~~~l 272 (406)
+|||.++++.++.++|+++++++|+++.++.+...++| ++++..+++..+++|+.+|+++|++.| +..+++++..
T Consensus 82 ~~Gd~~ls~~lt~istll~~~~~P~~~~l~~~~~~~~~~~~~~~~~~~~l~~v~lPl~lG~l~r~~~p~~~~~~~~~~~~ 161 (187)
T PF01758_consen 82 AGGDVALSVSLTLISTLLAPFLMPLLLYLLSGGSVDVDSISPWDIIKSLLLIVILPLLLGMLLRKYLPREKFARRLKPFL 161 (187)
T ss_dssp TT--HHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGHHH---HHHHHHHHHHHTHHHHHHHHHHHHHHG-GGG-HHHHCCH
T ss_pred hCCCcccccceeeHHHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHHHheehHHHhHHHHHHHHhhHHHHHHHHHHHh
Confidence 99999999999999999999999999999998877777 899999999999999999999999999 7888999999
Q ss_pred chHHHHHHHHHHHHHHHhhhhHHhh
Q 037575 273 PFVAMICTSLCIGSPLAINRSQILS 297 (406)
Q Consensus 273 ~~is~l~lllii~~~~~~n~~~i~~ 297 (406)
+.++.+++++++...++.|.+.+.+
T Consensus 162 ~~~s~~~l~~~i~~~~~~~~~~i~~ 186 (187)
T PF01758_consen 162 KPLSFILLLLIIVLIFASNASVIAS 186 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHTH-----
T ss_pred hHHHHHHHHHHHHHHHHHhcccccC
Confidence 9999999999998888888877654
No 7
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=99.94 E-value=9.2e-27 Score=231.40 Aligned_cols=275 Identities=40% Similarity=0.591 Sum_probs=240.5
Q ss_pred HHHHHHHHHHHHHhhcc-chhhHhhhhhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHH
Q 037575 90 MLPFVVALTAVAALAQP-STFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKA 168 (406)
Q Consensus 90 ~~~~~~~~~~~lgl~~P-~~~~~l~~~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~ 168 (406)
..+.+.....+.....| ..+.|+...+..+.+...|+++|++.+++++++.+++|..+..+++.|+++||+.++.+++.
T Consensus 87 ~lp~~~~~~~v~~~~~~~~~~t~l~~~~~~~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~ 166 (371)
T KOG2718|consen 87 ILPLLVFLLKVLFLLDPLLAFTWLVTGCFPPGLLSNMLSFGIKLDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKV 166 (371)
T ss_pred chhHHHHHHHHHhhcCCcccceEEEeCccccHHHHHHHHHhcCccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhH
Confidence 45677777777777777 78888776777888899999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHhcCchhhHHHHHHHHc-CCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccChHHHHHHHHHHH
Q 037575 169 FGIPQIFYAGFVLTACVSGAQLSSYASFLS-KGDVAVSILLSSSTTIASVLITPLLTGLLIGSVIPVDAVAMSKSILQVV 247 (406)
Q Consensus 169 ~~l~~~~~~GlvL~a~~P~~~~s~v~t~~~-gGd~ala~~~~~~stlls~~~~Pl~l~ll~g~~v~vd~~~l~~~ll~~v 247 (406)
+.+|..+++|.+++.|++++..++..+.+. +||+.+++.+|.++|+.+++++|++-.++.+..++.|...+..+.+..+
T Consensus 167 ~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v~lsilmT~~stv~avi~~pl~s~~l~~~l~~~d~~~v~~s~~~vv 246 (371)
T KOG2718|consen 167 LLLPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDVTLSILMTTISTVLAVILTPLLSILLGRALIPVDALGVIASILQVV 246 (371)
T ss_pred hhCCccccceeEEEEeccCCcchhhheeecCCcchhhHHHHHHHHHHHHHHHHHHHHHhhchhhhcccchhhhhhhhHHh
Confidence 988888877888887777777777655555 9999999999999999999999999999999999999988888889999
Q ss_pred HHHHHHHHHHHhhhHhHHHhHhcccchHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 037575 248 LVPVALGLGLNTYAKPVVSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIPSW 327 (406)
Q Consensus 248 llPl~lG~llr~~~p~~~~~i~~~l~~is~l~lllii~~~~~~n~~~i~~~~~~~i~~~~lll~~~~f~lG~~l~r~~~~ 327 (406)
.+|+.+|.++|+++|++...+.+.++.++.+...+++......|.+.+.. ..++++..+..+++++|..||+.++. .
T Consensus 247 ~~pl~lG~lL~~~~~k~t~~i~~~~~~vsv~~t~l~~~~p~~~n~~~~~~-~~~~i~~~~~~l~l~g~l~~Y~~~~~--~ 323 (371)
T KOG2718|consen 247 GLPLALGLLLNKWFPKRTVAIEPGLPPVSVCLTILCLAFPPGENGYLFLF-FGYQILLLGAALPLAGFLAGYLLSFS--P 323 (371)
T ss_pred HHHHHHHHHhcccCccceeeeecCCCchHHHhhhhhhcCChhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcc--c
Confidence 99999999999999999999999999999999999998888888888777 58899999999999999999999744 2
Q ss_pred CCCccceeeeeeecccccHHHHHHHHHHhcCC-cccHHHHH
Q 037575 328 RQGEEVSRTISLCTGMQSSTLAGLLATQFLGS-SQAVPPAC 367 (406)
Q Consensus 328 ~~~~~~~~a~~~~~g~rN~~Lai~lA~~~f~~-~~alp~~~ 367 (406)
..++.++|++++|+|+||..++.++++..+.| ..+.|++.
T Consensus 324 ~~~~a~~~tisie~g~q~s~~a~~l~t~~~~dpl~~~~~~~ 364 (371)
T KOG2718|consen 324 LDDVATARTISIETGMQNSLLALALATKHLQDPLVVVPPAT 364 (371)
T ss_pred cchhhhhcchHHHhccchhHHHHHHhhcccCCceeeeccch
Confidence 22255889999999999999999999988864 44555543
No 8
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.64 E-value=3.3e-15 Score=148.35 Aligned_cols=192 Identities=17% Similarity=0.179 Sum_probs=148.0
Q ss_pred CcccccccchhhccCCCCCccC-c-----CCcccc---chheeeccc------cccC-----Cc--cccc--------cc
Q 037575 33 QKSVKANGGLCTLACSTSPFVG-R-----VGLQRR---EGNVSLLSF------GINA-----GS--VVAR--------YD 82 (406)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~g-~-----~g~~~~---~~~~~~~~f------~~~~-----~~--~~~~--------~~ 82 (406)
.++.+++...+++.++|..|+| | +|+.+- ..++.++.. ...+ ++ ++++ .+
T Consensus 95 ~~~~~~~~~~~~~~~~N~~~~GlPl~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (321)
T TIGR00946 95 ADYGKLSGFLLVSALPNTAFIGYPLLLSLFGEEGAKILIAALFIDTGAVLMTIALGLFLVSEDGAGGEGSGESTRLMLIF 174 (321)
T ss_pred cccchhhHHHHHhhhccceeehHHHHHHHhcccchhhhHHHHHHHhccchhHHHHHHHHhccccccccccchhHHHHHHH
Confidence 3456778888899999999999 8 998873 333222211 1111 11 1111 02
Q ss_pred HHHHHHhHHHHHHHHHHHH----HhhccchhhHhhhhhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHH
Q 037575 83 SSQVLSAMLPFVVALTAVA----ALAQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIK 158 (406)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~l----gl~~P~~~~~l~~~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~ 158 (406)
..+.+-++++++....+++ |+..|+......+..-..+.++.|+.+|+.++.++.+ ++.+.......+++++.
T Consensus 175 ~~~~~~~nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~---~~~~~~~~~~~~klil~ 251 (321)
T TIGR00946 175 VWKKLIKFPPLWAPLLSVILSLVGFKMPGLILKSISILSGATTPMALFSLGLALSPRKIK---LGVRDAILALIVRFLVQ 251 (321)
T ss_pred HHHHHHhCCChHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhc---cChHHHHHHHHHHHHHH
Confidence 3444556777776666655 7778988776655555677889999999999887764 34466777888899999
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhcCchhhHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037575 159 PILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIASVLITPLLTGLL 227 (406)
Q Consensus 159 Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~v~t~~~gGd~ala~~~~~~stlls~~~~Pl~l~ll 227 (406)
|++++++...++++++.....++++++|++..+.++++++|+|.+++...+.+||++|++++|+|++++
T Consensus 252 P~i~~~~~~~~~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~l~ 320 (321)
T TIGR00946 252 PAVMAGISKLIGLRGLELSVAILQAALPGGAVAAVLATEYEVDVELASTAVTLSTVLSLISLPLFIILL 320 (321)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHcCChhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999864
No 9
>PRK09903 putative transporter YfdV; Provisional
Probab=99.56 E-value=4.8e-14 Score=139.77 Aligned_cols=188 Identities=12% Similarity=0.068 Sum_probs=140.6
Q ss_pred cccccchhhccCCCCCccC-c-----CCcccc---chheeecccc----------ccC-Cc-cccc---ccHHHHHHhHH
Q 037575 36 VKANGGLCTLACSTSPFVG-R-----VGLQRR---EGNVSLLSFG----------INA-GS-VVAR---YDSSQVLSAML 91 (406)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~g-~-----~g~~~~---~~~~~~~~f~----------~~~-~~-~~~~---~~~~~~l~~~~ 91 (406)
.+++...+...++|..|+| | +|+.+. ..++.++... .+. ++ ++++ .+..+.+-+++
T Consensus 95 ~~~~~~~~~~~~~N~gf~G~Pl~~~~~G~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~nP 174 (314)
T PRK09903 95 AEAAVCALIAGSPTIGFLGFAVLDPIYGDSVSTGLVVAIISIIVNAITIPIGLYLLNPSSGADGKKNSNLSALISAAKEP 174 (314)
T ss_pred chhhHhhhhhcCCCcccccHHHHHHHcCchhhhhhHHHHHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHhch
Confidence 3445566778899999999 8 888743 2222211110 010 11 1111 12344456778
Q ss_pred HHHHHHHHHH----HhhccchhhHhhhhhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHH
Q 037575 92 PFVVALTAVA----ALAQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAK 167 (406)
Q Consensus 92 ~~~~~~~~~l----gl~~P~~~~~l~~~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~ 167 (406)
+++....+++ |+..|++.....+..-..+.++.|+.+|.+++..+++ .+ +......+.++++.|++++++..
T Consensus 175 ~iia~~~gl~~~l~~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~---~~-~~~~~~~~~Kli~~P~i~~~~~~ 250 (314)
T PRK09903 175 VVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFE---FS-AEIAYNTFLKLILMPLALLLVGM 250 (314)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---cc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777777664 7788988876655555677889999999998877653 12 33456677899999999998888
Q ss_pred HcCCChHHHHHHHHHhcCchhhHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037575 168 AFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIASVLITPLLTGLL 227 (406)
Q Consensus 168 ~~~l~~~~~~GlvL~a~~P~~~~s~v~t~~~gGd~ala~~~~~~stlls~~~~Pl~l~ll 227 (406)
.+++++......++++++|++..+.++++++|+|.++++..+.+||++|.+++|+|++++
T Consensus 251 ~~~l~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l~ 310 (314)
T PRK09903 251 ACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVS 310 (314)
T ss_pred HcCCCcHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999999999999875
No 10
>COG0679 Predicted permeases [General function prediction only]
Probab=99.49 E-value=2.7e-13 Score=134.34 Aligned_cols=190 Identities=17% Similarity=0.202 Sum_probs=149.9
Q ss_pred cccchhhccCCCCCccC-c-----CCccccchheeeccccccC------------Cccc--ccccHHHHHHhHHHHHHHH
Q 037575 38 ANGGLCTLACSTSPFVG-R-----VGLQRREGNVSLLSFGINA------------GSVV--ARYDSSQVLSAMLPFVVAL 97 (406)
Q Consensus 38 ~~~~~~~~~~~~~~~~g-~-----~g~~~~~~~~~~~~f~~~~------------~~~~--~~~~~~~~l~~~~~~~~~~ 97 (406)
.+...++++++|..|+| | +|+.+-+.++-++....-. +++. ...+..+.+.++++++..+
T Consensus 96 ~~~~~~~~~~~N~g~lg~pi~~~~~G~~gl~~~~i~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~nP~i~a~i 175 (311)
T COG0679 96 TVIFALASAFPNIGFLGLPVALSLFGEKGLAYAVIFLIIGLFLMFTLGVILLARSGGGTNKSLLSVLKKLLTNPLIIALI 175 (311)
T ss_pred HHHHHHHHHhcccchhhHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHhCcHHHHHH
Confidence 34667799999999999 7 8888777665332222111 2222 2235677888999988887
Q ss_pred HHHH----HhhccchhhHhhhhhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCCh
Q 037575 98 TAVA----ALAQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQ 173 (406)
Q Consensus 98 ~~~l----gl~~P~~~~~l~~~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~ 173 (406)
.+.+ |+..|+......+..-....+..|+.+|++++.+..+ ..+++........+++++|+.++.+++.+++++
T Consensus 176 ~g~~~~~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~--~~~~~~~~~~~~~kll~~Pl~~~~~~~~~~l~~ 253 (311)
T COG0679 176 LGLLLNLLGISLPAPLDTAVDLLASAASPLALIALGLSLAFLKLK--GSKPPIILIALSLKLLLAPLVALLVAKLLGLSG 253 (311)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhc--cccchhHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 7766 7888987766545555678889999999999995554 233455666666699999999999999999999
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037575 174 IFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIASVLITPLLTGLLIG 229 (406)
Q Consensus 174 ~~~~GlvL~a~~P~~~~s~v~t~~~gGd~ala~~~~~~stlls~~~~Pl~l~ll~g 229 (406)
+....+++++++|++..+.++++++++|.+++...+.+||+++.+++|.+...+..
T Consensus 254 ~~~~v~vl~~a~P~A~~~~v~a~~~~~~~~laa~~i~ist~ls~~t~p~~~~~l~~ 309 (311)
T COG0679 254 LALQVLVLLSAMPTAVNAYVLARQYGGDPRLAASTILLSTLLSLLTLPLLILLLLR 309 (311)
T ss_pred HHHHHHHHHhhCcHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 98888899999999999999999999999999999999999999999999877653
No 11
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.00 E-value=2.8e-09 Score=108.03 Aligned_cols=135 Identities=21% Similarity=0.171 Sum_probs=102.8
Q ss_pred hHHHHHHHHH-HHHHh---hcc----chhhHhhhhhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 037575 89 AMLPFVVALT-AVAAL---AQP----STFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPI 160 (406)
Q Consensus 89 ~~~~~~~~~~-~~lgl---~~P----~~~~~l~~~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Pl 160 (406)
++++++..+. .++++ ..| .+.....+.+-....++.|+.+|..+.....+...+ .+......+.+++++|+
T Consensus 243 ~nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~~-~~~~~~~~~~rlii~P~ 321 (385)
T PF03547_consen 243 KNPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSALG-WKPSIIAVLVRLIILPL 321 (385)
T ss_pred hCcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccchh-hHHHHHHHHHHHHHHHH
Confidence 4455554443 33333 344 444443334345667788899999887655432222 23344467889999999
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhcCchhhHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 037575 161 LGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIASVLITPLLT 224 (406)
Q Consensus 161 la~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~v~t~~~gGd~ala~~~~~~stlls~~~~Pl~l 224 (406)
+++++.+.++++++....+++.+++|++..+.+++.+++.|.+.+...+..+|+++++++|+|+
T Consensus 322 i~~~~~~~~~l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 385 (385)
T PF03547_consen 322 IGIGIVFLLGLDGDMARVLILQAAMPTAINSFVIASLYGLDEEEASSIVFWSTLLSIPTLPLWI 385 (385)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999988888999999999999999999999999999999999999999999984
No 12
>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]
Probab=98.83 E-value=6.4e-09 Score=95.59 Aligned_cols=183 Identities=19% Similarity=0.187 Sum_probs=135.1
Q ss_pred cHHHHH-HhHHHHHHHHHHHHHhhccchhhH---hhhhhH--HHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHH
Q 037575 82 DSSQVL-SAMLPFVVALTAVAALAQPSTFTW---VSKELY--APALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQY 155 (406)
Q Consensus 82 ~~~~~l-~~~~~~~~~~~~~lgl~~P~~~~~---l~~~~~--~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~ 155 (406)
+..++. ++|+...+.++...+=+-|+.+.. +.+.+. -..+..+++..|++++.+++..+.+++++.+++++..+
T Consensus 15 R~~e~~~~~Wf~~~I~~~i~~aKL~p~~G~~gG~Lk~~ys~~yI~va~IF~~SGL~LkTE~l~aA~~~w~LhLFilI~~L 94 (287)
T KOG4821|consen 15 RVTEFLKSQWFFICIAILIVIAKLAPNFGRDGGLLKGQYSIGYICVAWIFLQSGLGLKTESLMAAMLNWRLHLFILILSL 94 (287)
T ss_pred HHHHHHhcchHHHHHHHhhhHhhhCCCCCccCCcccCceeEEeEEEEEEEeecCccccHHHHHHHHhCCchHHHHHHHHH
Confidence 345555 477888877777777777776532 212221 13445677899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHc---CCChHHHHHHHHHhcCchhhHHHH-HHHHcCCChHH-HHHHHHHHHHHHHHHHHHHHHHHhCC
Q 037575 156 IIKPILGVLIAKAF---GIPQIFYAGFVLTACVSGAQLSSY-ASFLSKGDVAV-SILLSSSTTIASVLITPLLTGLLIGS 230 (406)
Q Consensus 156 ~l~Plla~~l~~~~---~l~~~~~~GlvL~a~~P~~~~s~v-~t~~~gGd~al-a~~~~~~stlls~~~~Pl~l~ll~g~ 230 (406)
++.|...+++.... +.|+++..|+.+.+|||+.++|++ .|..+|||.+. .......+.+.+....|-....++.+
T Consensus 95 l~tPs~~~Lf~~~~~~~~i~~wLl~GL~~~~CMPttvSS~ViLT~~aGGNa~A~~v~S~f~g~L~~~~i~~~l~q~LL~~ 174 (287)
T KOG4821|consen 95 LITPSIVYLFCCAVKAAKIDDWLLIGLILTACMPTTVSSNVILTTNAGGNASALCVCSVFIGNLLGAFITPALVQMLLNR 174 (287)
T ss_pred HHhHHHHHHHHHHHhCcchhHHHHhhheeeeecCCccccceeeeeccCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 99999999987764 356688899999999999999996 99999999842 23344556666666777666666532
Q ss_pred c--------cccC----hHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 037575 231 V--------IPVD----AVAMSKSILQVVLVPVALGLGLNTYAKPV 264 (406)
Q Consensus 231 ~--------v~vd----~~~l~~~ll~~vllPl~lG~llr~~~p~~ 264 (406)
. +.+. ...++++....+++|...|.......|+-
T Consensus 175 ~~~~~~~~a~g~gi~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 220 (287)
T KOG4821|consen 175 APFAYGNPATGNGIGALYGRVMKQVGLSVFVPLFVGQVIQNCFPKG 220 (287)
T ss_pred CCccccCccccchHHHHHHHHHHhhcceEEehhhcccccccccCCc
Confidence 1 1111 23456666777899999999999887764
No 13
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=98.81 E-value=3.6e-07 Score=89.55 Aligned_cols=286 Identities=19% Similarity=0.198 Sum_probs=166.5
Q ss_pred HHHHHHhHH----HHHHHHHHHHHhhccchhhH------hhhhhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHH
Q 037575 83 SSQVLSAML----PFVVALTAVAALAQPSTFTW------VSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFV 152 (406)
Q Consensus 83 ~~~~l~~~~----~~~~~~~~~lgl~~P~~~~~------l~~~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~ 152 (406)
+.++++|.+ .+=+.+++++.-.+|+.++. +-+.-..+.+.+.+|++|.+++.++..+..+|--. .++
T Consensus 3 i~~~~~kiPgg~m~vPl~lga~inTf~P~~l~iG~fT~alf~~g~~~il~~~~~~~Ga~I~~k~~~~~l~kg~~---l~~ 79 (312)
T PRK12460 3 IKKAIKKIPGGMMVVPLLIGALINTFFPQALEIGGFTTALFKTGAAPLLGAFLLCMGAQISLKAAPQALLKGGV---LTI 79 (312)
T ss_pred hhhhhccCCCceeHHHHHHHHHHHhccCcchhhCcccHHHHhcChHHHHHHHHHHhcCeeeccccchhhhhhhh---hhh
Confidence 445555553 22244566778888877532 11223456778888999999999999888876432 234
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHH-HHHhcCchhhHHHH---HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037575 153 AQYIIKPILGVLIAKAFGIPQIFYAGF-VLTACVSGAQLSSY---ASFLSKGDVAVSILLSSSTTIASVLITPLLTGLLI 228 (406)
Q Consensus 153 ~~~~l~Plla~~l~~~~~l~~~~~~Gl-vL~a~~P~~~~s~v---~t~~~gGd~ala~~~~~~stlls~~~~Pl~l~ll~ 228 (406)
.|+++-=++++.+++++|.+..+-... .+.+++--. ...+ ++..+|-+.+- -+.... ++-.-|+...+.+
T Consensus 80 ~K~~~~~~~g~~~~~~~g~~g~~Gls~laiiaa~~~~-Ng~ly~al~~~yG~~~d~-gA~~~~----sl~~GPf~tm~aL 153 (312)
T PRK12460 80 TKLGVAIVIGLLVGKFFGAEGIFGLSGLAIVAAMSNS-NGGLYAALMGEFGDERDV-GAISIL----SLNDGPFFTMLAL 153 (312)
T ss_pred HHHHHHHHHHHHHHHHcCcccccchHHHHHHHHHhcC-cHHHHHHHHHHcCCHhhh-hHHhhh----hhccCcHHHHHHH
Confidence 688887788899999998766332211 233333222 2223 35555544433 333222 3333344444443
Q ss_pred CC--ccccChHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHhHhcccchHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHH
Q 037575 229 GS--VIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPVVSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLP 306 (406)
Q Consensus 229 g~--~v~vd~~~l~~~ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~is~l~lllii~~~~~~n~~~i~~~~~~~i~~~ 306 (406)
+. -.++++..+ .-.++|+++|++++...+++.+..++-.+..-. +..+..-...|-+++.+. ++.-++.
T Consensus 154 ga~gLA~ip~~~l-----v~lilpILiGmilGNld~~~~~~l~~Gi~f~I~---f~~f~LG~~lnl~~I~~~-G~~GIlL 224 (312)
T PRK12460 154 GAAGLANIPIMAL-----VAALLPLVLGMILGNLDPDMRKFLTKGGPLLIP---FFAFALGAGINLSMLLQA-GLAGILL 224 (312)
T ss_pred HHHHHhcCChHHH-----HHHHHHHHHHHHHhccchhhHHHHhccceEeHH---HHHHHhcCCeeHHHHHHh-ChHHHHH
Confidence 32 134554332 348999999999999887777777766654111 111111123355666664 5555556
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCccceeeeeeecccccHHHHHHHHHHhcCC----c---ccHHHHHHHHHHHHHHHHH
Q 037575 307 VLTFHAVAFAVGYWVSKIPSWRQGEEVSRTISLCTGMQSSTLAGLLATQFLGS----S---QAVPPACSVIAMAIMGLCL 379 (406)
Q Consensus 307 ~lll~~~~f~lG~~l~r~~~~~~~~~~~~a~~~~~g~rN~~Lai~lA~~~f~~----~---~alp~~~y~v~q~i~~~~l 379 (406)
.++.....+..+|+++|+ +|.+++. +....+..-| +++..-|...-+| . +..=++-..+...+...++
T Consensus 225 ~v~vv~~t~~~~~~i~rl--lg~~~~~--g~li~stAGn-AIcgpAAVaAadP~~~~~~~~Ataqvaa~vivTail~P~~ 299 (312)
T PRK12460 225 GVLVTIVTGFFNIFADRL--VGGTGIA--GAAASSTAGN-AVATPLAIAAADPSLAPVAAAATAQVAASVIVTAILTPLL 299 (312)
T ss_pred HHHHHHHHHHHHHHHHHH--hCCChhH--HHHHHHHhhH-HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666667888899999998 6665554 3333322445 3333333322232 1 1122344567788889999
Q ss_pred HHHHhcCccccc
Q 037575 380 ASFWGSGSRIRD 391 (406)
Q Consensus 380 a~~~~~~~~~~~ 391 (406)
.+||.||.++|+
T Consensus 300 t~~~~k~~~~~~ 311 (312)
T PRK12460 300 TSWVAKKEAKKK 311 (312)
T ss_pred HHHHHHHhcccc
Confidence 999999988765
No 14
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=98.19 E-value=1.6e-06 Score=87.26 Aligned_cols=230 Identities=18% Similarity=0.211 Sum_probs=155.9
Q ss_pred HHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHH-HHHHHHHHHHHHcCCChHHHHHHHHHhcCchhhHHHHHHHHcCC
Q 037575 122 GGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYI-IKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKG 200 (406)
Q Consensus 122 ~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~-l~Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~v~t~~~gG 200 (406)
...|+..|++++.+.+.++.++++.+...+..++- ++|...+.....+..++......+...++|++..+++++.-.++
T Consensus 51 ~~~~~~~~c~~~i~~~~~h~~~~~g~~v~~~~~~~~~lp~~~~~~~v~~~~~~~~~~t~l~~~~~~~gl~~~~ls~g~~~ 130 (371)
T KOG2718|consen 51 NFVMFSLGCNLTISLLWRHSLRSWGILVALKEAFGLILPLLVFLLKVLFLLDPLLAFTWLVTGCFPPGLLSNMLSFGIKL 130 (371)
T ss_pred hHhhcccccceeccchhhhhcCcceeeeehhhccccchhHHHHHHHHHhhcCCcccceEEEeCccccHHHHHHHHHhcCc
Confidence 37889999999999999988888777777778888 99999999988888888777888999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHH-HHHHHHhC----CccccChHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHhHhcccchH
Q 037575 201 DVAVSILLSSSTTIASVLITP-LLTGLLIG----SVIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPVVSFLRPVMPFV 275 (406)
Q Consensus 201 d~ala~~~~~~stlls~~~~P-l~l~ll~g----~~v~vd~~~l~~~ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~i 275 (406)
|.+....++.-.+.+.+..+| ++++=+.| .....|...-..-++.....|...|..++...++-...+...+..+
T Consensus 131 ~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v~lsilmT~~ 210 (371)
T KOG2718|consen 131 DMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLLLPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDVTLSILMTTI 210 (371)
T ss_pred cHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHhhCCccccceeEEEEeccCCcchhhheeecCCcchhhHHHHHHH
Confidence 999999999888888877777 33322222 1122222111222345668899999988887754333333333334
Q ss_pred HHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHH--HHHHHHHhcccCCCCCccceeeeeeecccccHHHHHHHH
Q 037575 276 AMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVA--FAVGYWVSKIPSWRQGEEVSRTISLCTGMQSSTLAGLLA 353 (406)
Q Consensus 276 s~l~lllii~~~~~~n~~~i~~~~~~~i~~~~lll~~~~--f~lG~~l~r~~~~~~~~~~~~a~~~~~g~rN~~Lai~lA 353 (406)
+.++.+++.-..-....+.+.......+.. -.+.+++ +.+|+++.+. -.+++..++.++||.++...+-
T Consensus 211 stv~avi~~pl~s~~l~~~l~~~d~~~v~~--s~~~vv~~pl~lG~lL~~~-------~~k~t~~i~~~~~~vsv~~t~l 281 (371)
T KOG2718|consen 211 STVLAVILTPLLSILLGRALIPVDALGVIA--SILQVVGLPLALGLLLNKW-------FPKRTVAIEPGLPPVSVCLTIL 281 (371)
T ss_pred HHHHHHHHHHHHHHhhchhhhcccchhhhh--hhhHHhHHHHHHHHHhccc-------CccceeeeecCCCchHHHhhhh
Confidence 443333222111111222332221222222 3344444 8889888854 2235778999999999998887
Q ss_pred HHhcCCc
Q 037575 354 TQFLGSS 360 (406)
Q Consensus 354 ~~~f~~~ 360 (406)
...|++.
T Consensus 282 ~~~~p~~ 288 (371)
T KOG2718|consen 282 CLAFPPG 288 (371)
T ss_pred hhcCChh
Confidence 7777764
No 15
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=98.18 E-value=0.00022 Score=69.93 Aligned_cols=276 Identities=20% Similarity=0.293 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHhhccchhhHh---hh---hhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHH
Q 037575 92 PFVVALTAVAALAQPSTFTWV---SK---ELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLI 165 (406)
Q Consensus 92 ~~~~~~~~~lgl~~P~~~~~l---~~---~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l 165 (406)
.+=+.++.++.-.+|+.++.. .+ .-..+.+.+.+|++|.+++.++..+..||--. .++.|+++-=++++++
T Consensus 16 vVPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~---ll~~K~~~~~~lgl~~ 92 (314)
T PF03812_consen 16 VVPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGV---LLLVKFIIGALLGLLV 92 (314)
T ss_pred HHHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhH---HHHHHHHHHHHHHHHH
Confidence 444556677778888876521 11 11356777788999999999999999876433 3356888888889999
Q ss_pred HHHcCCChH---HHHHH---HHHhcCchhhHHH--HHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCC--ccccC
Q 037575 166 AKAFGIPQI---FYAGF---VLTACVSGAQLSS--YASFLSKGDVAVSILLSSSTTIASVLITPLLTGLLIGS--VIPVD 235 (406)
Q Consensus 166 ~~~~~l~~~---~~~Gl---vL~a~~P~~~~s~--v~t~~~gGd~ala~~~~~~stlls~~~~Pl~l~ll~g~--~v~vd 235 (406)
.++++.+.. ...|+ .+++++-....+- .++..+|-+.+-+ +.. ++++..-|+...+.+|. ..++|
T Consensus 93 ~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd~~D~g-A~~----i~sl~~GPf~tMl~LG~sG~a~ip 167 (314)
T PF03812_consen 93 GKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGDEEDVG-AFS----ILSLNDGPFFTMLALGASGLANIP 167 (314)
T ss_pred HHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCCHHHhH-HHH----HHHhhhhHHHHHHHHhhccccCCC
Confidence 999987642 22333 3344443322222 2455555444433 332 34555566666666653 35677
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHhHhcccchHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHHH
Q 037575 236 AVAMSKSILQVVLVPVALGLGLNTYAKPVVSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAF 315 (406)
Q Consensus 236 ~~~l~~~ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~is~l~lllii~~~~~~n~~~i~~~~~~~i~~~~lll~~~~f 315 (406)
+..+ .-.++|+++|+++-..-|++.+...+-.+.+--+ +-+.+. ...|-+++.+.....++ ..++..++..
T Consensus 168 ~~~l-----v~~llP~iiG~iLGNLD~~~r~fl~~~~~~lIPF-~~f~lG--a~inl~~i~~aGl~GIl-Lgv~~~~vtg 238 (314)
T PF03812_consen 168 WMSL-----VAALLPIIIGMILGNLDPDFRKFLAPGVPILIPF-FGFALG--AGINLSNIIKAGLSGIL-LGVIVVVVTG 238 (314)
T ss_pred HHHH-----HHHHHHHHHHHHHhcCCHHHHHHHhcCCCeeeeh-hhhhhc--CCCCHHHHHHhCcchHH-HHHHHHHHHh
Confidence 6554 5788999999999999888877666554321111 111111 12355555553222222 2223233333
Q ss_pred HHHHHHhcccCCCCCccceeeeeeecccccHHHHHHHHHHhcCCc-------ccHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 037575 316 AVGYWVSKIPSWRQGEEVSRTISLCTGMQSSTLAGLLATQFLGSS-------QAVPPACSVIAMAIMGLCLASFWGSGSR 388 (406)
Q Consensus 316 ~lG~~l~r~~~~~~~~~~~~a~~~~~g~rN~~Lai~lA~~~f~~~-------~alp~~~y~v~q~i~~~~la~~~~~~~~ 388 (406)
...|+.-|. .+.++. ....+.++..-| +.+..-+...-+|. +..=++...++..+...++.+||.||-+
T Consensus 239 ~~~~~~dr~--i~~~~g-~aG~A~sstAGn-avatPaaiA~~dP~~~~~~~~ATaQvAaavIvTail~P~lt~~~~kr~k 314 (314)
T PF03812_consen 239 IPLYLADRL--ILKGNG-VAGAAISSTAGN-AVATPAAIAAADPSFAPYAASATAQVAAAVIVTAILTPILTSWWAKRFK 314 (314)
T ss_pred HHHHHHHHH--HcCCCC-ceeehHHhhhhh-hhhhhHHHHHhChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444555665 221222 223444444444 34444333333332 1122344567788888889999998753
No 16
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=98.05 E-value=0.00016 Score=70.51 Aligned_cols=284 Identities=13% Similarity=0.190 Sum_probs=156.4
Q ss_pred HHHHHHhHH----HHHHHHHHHHHhhccchhhHhh---h---hhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHH
Q 037575 83 SSQVLSAML----PFVVALTAVAALAQPSTFTWVS---K---ELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFV 152 (406)
Q Consensus 83 ~~~~l~~~~----~~~~~~~~~lgl~~P~~~~~l~---~---~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~ 152 (406)
+.++++|.+ .+=+.+++++.-.+|+.+...- + .-..+.+.+.+|++|.+++.++-.+.++|--.+ ++
T Consensus 3 i~~~i~kIPGG~MiVPLllga~inTf~P~~~~~~GgFTtalf~G~~~il~~~l~~~Ga~I~~k~~g~~l~kg~~l---~~ 79 (314)
T TIGR00793 3 IKRSIEKIPGGMMLVPLFLGALCHTFAPGAGKYFGSFTNGLITGTVPILAVWFFCMGASIDLSATGTVLRKSGTL---VV 79 (314)
T ss_pred hhhhhccCCCceeHHHHHHHHHHHhcCCchhhhcCchhHHHHcCcHHHHHHHHHHhCCeeeecccchhhhhccee---ee
Confidence 344555553 2224456677888898754411 1 123567778889999999999998888764322 24
Q ss_pred HHHHHHHHHHHHHHHHcCCCh---HHHHHH---HHHhcCchhhHHHH---HHHHcCCChHHHHHHHHHHHHHHHHHHHHH
Q 037575 153 AQYIIKPILGVLIAKAFGIPQ---IFYAGF---VLTACVSGAQLSSY---ASFLSKGDVAVSILLSSSTTIASVLITPLL 223 (406)
Q Consensus 153 ~~~~l~Plla~~l~~~~~l~~---~~~~Gl---vL~a~~P~~~~s~v---~t~~~gGd~ala~~~~~~stlls~~~~Pl~ 223 (406)
.|+++-=++++.++++++.+. .+..|+ .+.+++--. ...+ ++..+|-+.+-. +.. ++++-.-|+.
T Consensus 80 ~K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~ns-NggLY~aL~~qyGd~~D~g-A~~----i~sl~~GPf~ 153 (314)
T TIGR00793 80 TKIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMT-NGGLYASIMQQYGTKEEAG-AFV----LMSLESGPLM 153 (314)
T ss_pred HHHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCC-cHHHHHHHHHHcCCHhhhh-hhh----hhhhccCcHH
Confidence 588887788899999998765 222233 233333221 2223 355555444332 222 3344445666
Q ss_pred HHHHhCC--ccccChHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHhHhcccchHHHHHHHHHHHHHHHhhhhHHhhhhhH
Q 037575 224 TGLLIGS--VIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPVVSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEGL 301 (406)
Q Consensus 224 l~ll~g~--~v~vd~~~l~~~ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~is~l~lllii~~~~~~n~~~i~~~~~~ 301 (406)
..+.+|. ..++|+..+ .-.++|+++|+++-..-|++.+...+-.+.+--+ ..+-+. ...|-+++.+. +.
T Consensus 154 TMi~LG~sGlA~ip~~~l-----v~~ilPlliG~ilGNLD~~~r~fl~~~~~~lIpF-f~FaLG--aginl~~i~~a-Gl 224 (314)
T TIGR00793 154 TMVILGTAGIASFEPHVF-----VGAVLPFLVGFALGNLDPELRDFFSKAVQTLIPF-FAFALG--NTIDLGVIIQT-GL 224 (314)
T ss_pred HHHHHhhccCCCCCHHHH-----HHHHHHHHHHHHHhcCCHHHHHHhccCCCeeeeh-hhhhhc--CCCCHHHHHHh-Cc
Confidence 6666664 356776554 5788999999999999888877666554432111 011111 12355566553 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCCccceeeeeeecccccHHHHHHHHHHhcCCc-------ccHHHHHHHHHHHH
Q 037575 302 QLVLPVLTFHAVAFAVGYWVSKIPSWRQGEEVSRTISLCTGMQSSTLAGLLATQFLGSS-------QAVPPACSVIAMAI 374 (406)
Q Consensus 302 ~i~~~~lll~~~~f~lG~~l~r~~~~~~~~~~~~a~~~~~g~rN~~Lai~lA~~~f~~~-------~alp~~~y~v~q~i 374 (406)
.=++..++..++.....|+.-|. .+-++.. ...+..+..-| +.+..-+...-+|. +..=++-..++..+
T Consensus 225 ~GIlLGl~v~~vtG~~~~~~dr~--~~g~~g~-aG~A~sstAGn-AvatPaavA~adPs~~~~a~~ATaqvAaavivTai 300 (314)
T TIGR00793 225 LGILLGVSVIILTGIPLILADKF--IGGGDGT-AGIAASSSAGA-AVATPVLIAEMVPAFKPVAPAATALVATSVIVTSL 300 (314)
T ss_pred chHHHHHHHHHHHhHHHHHHHHH--hcCCCCc-hhhHHHHHHHH-hhhhHHHHHHhChhhhhhHHHHHHHHHHHHHHHHH
Confidence 21222233333444555666665 3211111 13333333344 33433333333332 11113345677888
Q ss_pred HHHHHHHHHhcCcc
Q 037575 375 MGLCLASFWGSGSR 388 (406)
Q Consensus 375 ~~~~la~~~~~~~~ 388 (406)
...++.+||.||.+
T Consensus 301 L~Pilta~~~kr~~ 314 (314)
T TIGR00793 301 LVPIATVWWSKKVK 314 (314)
T ss_pred HHHHHHHHHHHhcC
Confidence 88899999998753
No 17
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=97.86 E-value=0.0022 Score=64.05 Aligned_cols=287 Identities=16% Similarity=0.235 Sum_probs=150.5
Q ss_pred HHHHHHhHH----HHHHHHHHHHHhhccchhhH------hhhhhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHH
Q 037575 83 SSQVLSAML----PFVVALTAVAALAQPSTFTW------VSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFV 152 (406)
Q Consensus 83 ~~~~l~~~~----~~~~~~~~~lgl~~P~~~~~------l~~~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~ 152 (406)
+.++++|.+ .+=..++..+.-..|+.... +-+.-..+.+.+.++++|.+++.++....++|-..+ ++
T Consensus 5 ~~~~~~kiPgg~m~vpl~~g~~i~tf~P~~~~~g~fT~alf~~g~~~l~~~~~~~~ga~i~~~~~~~~l~~g~~l---~~ 81 (326)
T PRK05274 5 IKRTIEKIPGGMMLVPLLLGALINTFAPGALYFGSFTNALFKTGAVPILAVFLFCMGASINLRATGTVLKKGGTL---LL 81 (326)
T ss_pred HHHHhccCCcceeeHHHHHHHHHHHhCCcceeeCcchHHHHhcChHHHHHHHHHHcCCEEeccccchhhhhchhH---HH
Confidence 445555543 22244566677788874321 112234567778889999999999998887764333 23
Q ss_pred HHHHHHHHHHHHHHHHcCCCh---HHHHHHHHHhcCchhhHHHHHHHHcCCChHHHHHHHH---------HHHHHHHHHH
Q 037575 153 AQYIIKPILGVLIAKAFGIPQ---IFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSS---------STTIASVLIT 220 (406)
Q Consensus 153 ~~~~l~Plla~~l~~~~~l~~---~~~~GlvL~a~~P~~~~s~v~t~~~gGd~ala~~~~~---------~stlls~~~~ 220 (406)
.++.+-=++++...++++.+. ....|.--.+ ..+.+-+.|.++....+. --.+++.-.-
T Consensus 82 ~k~~~~~~~~~~~~~~~g~~~i~~gl~~G~s~la---------~~a~l~~~N~~ly~~~~~~~g~~~d~ga~i~lsl~~G 152 (326)
T PRK05274 82 TKFAVAALVGVIAGKFIGEEGIRLGGFAGLSTLA---------IIAAMDNTNGGLYAALMGQYGTKEDAGAFVLMSLEDG 152 (326)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH---------HHHHhcCCCHHHHHHHHHHhCCCCCcchHHHHHHhhh
Confidence 466666666777777776533 2222221111 122222222222211110 0112233334
Q ss_pred HHHHHHHhCC--ccccChHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHhHhcccchHHHHHHHHHHHHHHHhhhhHHhhh
Q 037575 221 PLLTGLLIGS--VIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPVVSFLRPVMPFVAMICTSLCIGSPLAINRSQILSI 298 (406)
Q Consensus 221 Pl~l~ll~g~--~v~vd~~~l~~~ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~is~l~lllii~~~~~~n~~~i~~~ 298 (406)
|....++.+. ..+++..++. -+++|+++|+.++.+.+.+.+...+-.+.+--+.... .-...|.+++...
T Consensus 153 p~~tM~lL~aagla~~p~~~li-----~allplliG~~lgnl~~~l~~~~~~Gi~~lLp~~~~~---lG~~l~lq~i~~~ 224 (326)
T PRK05274 153 PFMTMLALGAAGLASFPPPALV-----GAVLPLLVGFILGNLDPELRQFLGKAVPVLIPFFAFA---LGNGIDLGTIITA 224 (326)
T ss_pred HHHHHHHHHhhCcccCCCchhh-----HHHHHHHHHHHHHhHHHhhHHHhcCCcEEEHHHHHHH---HhcceeHhHHHhc
Confidence 5554455443 2345544443 2239999999999987777777666655411111111 1112244444442
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccceeeeeeecccccHHH-HHHHHH--HhcCC---cccHHHHHHHHHH
Q 037575 299 EGLQLVLPVLTFHAVAFAVGYWVSKIPSWRQGEEVSRTISLCTGMQSSTL-AGLLAT--QFLGS---SQAVPPACSVIAM 372 (406)
Q Consensus 299 ~~~~i~~~~lll~~~~f~lG~~l~r~~~~~~~~~~~~a~~~~~g~rN~~L-ai~lA~--~~f~~---~~alp~~~y~v~q 372 (406)
++.-++..+..++.....+|+..|+ ++.+++ ....+..++..|... +.+++. ..+.+ .++.-++.-.+..
T Consensus 225 -G~~GilL~~~~~~~t~~~~~~~~Rl--~~~~~g-~~g~a~~ttaG~aic~pAAvaa~~p~~~~~~~~at~~VA~~vivt 300 (326)
T PRK05274 225 -GLSGILLGVAVVAVTGIPLYLADRL--IGGGNG-VAGAAAGSTAGNAVATPAAVAAADPSFAPFAPAATAQVAAAVIVT 300 (326)
T ss_pred -CCcchhhhhhHhhccchhhHhHhhe--eecCCC-cchHHHHHHHHHHHHHHHHHHhhccccccchHhHHHHHHHHHHHH
Confidence 3433444555556667778899998 543333 223445555566422 122221 12222 2334444445577
Q ss_pred HHHHHHHHHHHhcCccccchh
Q 037575 373 AIMGLCLASFWGSGSRIRDLT 393 (406)
Q Consensus 373 ~i~~~~la~~~~~~~~~~~~~ 393 (406)
.+...++.++|.||.++++..
T Consensus 301 ~il~P~l~~~~~k~~~~~~~~ 321 (326)
T PRK05274 301 AILAPILTAWWSKRVGKRAAE 321 (326)
T ss_pred HHHHHHHHHHHHHHhhccccc
Confidence 778888888999888876653
No 18
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=97.77 E-value=0.026 Score=56.32 Aligned_cols=105 Identities=19% Similarity=0.187 Sum_probs=85.2
Q ss_pred HHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCchhhHHH-HHHHHcCC
Q 037575 122 GGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSS-YASFLSKG 200 (406)
Q Consensus 122 ~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~-v~t~~~gG 200 (406)
.++=..+|.+++.+.+.+...++.......+...+..-..++.+.+.-+.|.. --+.+++|+|.+.. ++++..|+
T Consensus 32 ~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~d~~----TA~~~~~PGg~s~m~~la~~~ga 107 (318)
T PF05145_consen 32 AILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRRISGLDRA----TAFFASMPGGLSEMVALAEEYGA 107 (318)
T ss_pred HHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh----HHHHHcCCccHHHHHHHHHHcCC
Confidence 34447889999999999888777776666666666666777888888777754 34689999998766 59999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 037575 201 DVAVSILLSSSTTIASVLITPLLTGLLIGS 230 (406)
Q Consensus 201 d~ala~~~~~~stlls~~~~Pl~l~ll~g~ 230 (406)
|...-+....+=-++-++++|+...+..+.
T Consensus 108 d~~~Va~~q~lRl~~Vv~~vP~i~~~~~~~ 137 (318)
T PF05145_consen 108 DTRRVALVQSLRLLLVVLLVPFIASLLGGG 137 (318)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999887763
No 19
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=97.70 E-value=0.024 Score=56.87 Aligned_cols=100 Identities=17% Similarity=0.190 Sum_probs=84.3
Q ss_pred HHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCchhhHHH-HHHHHcCCChHH
Q 037575 126 LSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSS-YASFLSKGDVAV 204 (406)
Q Consensus 126 f~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~-v~t~~~gGd~al 204 (406)
..+|.+++.+++.+..+++......++......=+.+|.+.+.-..|... -..+++|+|.+.. .+++-+|.|.+.
T Consensus 69 ~~ig~~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~T----a~~gs~PGgas~m~~iA~d~gAd~~~ 144 (352)
T COG3180 69 IMIGASLTPSVLDTLKSNWPIVLVVLLLTLLSSILLGWLLKRFSILPGNT----AFLGSSPGGASAMVSIAQDYGADLRL 144 (352)
T ss_pred HHHhhhcCHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHhcCCCcch----hhHhcCCchHHHHHHHHHHhCCChhH
Confidence 56789999999999988888777777777777777888888766566543 3578999998777 499999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Q 037575 205 SILLSSSTTIASVLITPLLTGLLIG 229 (406)
Q Consensus 205 a~~~~~~stlls~~~~Pl~l~ll~g 229 (406)
.+.+..+=-+.-..+.|+..++..+
T Consensus 145 VAl~Q~lRvl~Vvl~vplv~~~~~~ 169 (352)
T COG3180 145 VALMQYLRVLFVVLLAPLVSRLFVG 169 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999885
No 20
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=97.10 E-value=0.25 Score=53.86 Aligned_cols=98 Identities=14% Similarity=0.019 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHH--HHHHHHHhcCchhhHHHHH
Q 037575 117 YAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIF--YAGFVLTACVSGAQLSSYA 194 (406)
Q Consensus 117 ~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~--~~GlvL~a~~P~~~~s~v~ 194 (406)
....+.++||.+|+.++++++++..|+ .+..+ ..|.++.-.+.+.++..++.+... ..|..+..+ .++....++
T Consensus 60 aelGvv~LlF~iGLEl~~~~l~~~~~~--~~~~g-~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~S-Staiv~~~L 135 (621)
T PRK03562 60 AEFGVVLMLFVIGLELDPQRLWKLRRS--IFGGG-ALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALS-STAIAMQAM 135 (621)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHH--HHHHH-HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 345677888999999999999866432 23333 335544444455566677765433 233333332 334444455
Q ss_pred HHHcCCChH---HHHHHHHHHHHHHHH
Q 037575 195 SFLSKGDVA---VSILLSSSTTIASVL 218 (406)
Q Consensus 195 t~~~gGd~a---la~~~~~~stlls~~ 218 (406)
.++-.-+.. .+.....+.-++++.
T Consensus 136 ~e~~~l~t~~G~~~l~~ll~~Dl~~i~ 162 (621)
T PRK03562 136 NERNLMVTQMGRSAFAILLFQDIAAIP 162 (621)
T ss_pred HHhccccCchHHHHHHHHHHHHHHHHH
Confidence 554332332 444455555554443
No 21
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.90 E-value=0.66 Score=50.38 Aligned_cols=97 Identities=13% Similarity=0.026 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHH--HHHHHHHhcCchhhHHHHH
Q 037575 117 YAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIF--YAGFVLTACVSGAQLSSYA 194 (406)
Q Consensus 117 ~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~--~~GlvL~a~~P~~~~s~v~ 194 (406)
....+.++||..|+.++++++++..| +....+ ..|.++.-++..++...++.+... ..|+. .+.+.++....++
T Consensus 60 aelGvv~LLF~iGLel~~~~l~~~~~--~~~~~g-~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~-la~SSTaiv~~iL 135 (601)
T PRK03659 60 SELGVVFLMFIIGLELNPSKLWQLRR--SIFGVG-AAQVLLSAAVLAGLLMLTDFSWQAAVVGGIG-LAMSSTAMALQLM 135 (601)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHHHHHHccCHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 34677788999999999999986543 223323 334444333344455556665432 23322 2333444444555
Q ss_pred HHHcCCCh---HHHHHHHHHHHHHHH
Q 037575 195 SFLSKGDV---AVSILLSSSTTIASV 217 (406)
Q Consensus 195 t~~~gGd~---ala~~~~~~stlls~ 217 (406)
.++-.-+. .++.....+.-+.++
T Consensus 136 ~e~~~~~t~~G~~~l~vll~~Di~~i 161 (601)
T PRK03659 136 REKGMNRSESGQLGFSVLLFQDLAVI 161 (601)
T ss_pred HHcccccCchHHHHHHHHHHHHHHHH
Confidence 55543333 234444444554433
No 22
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.73 E-value=0.96 Score=48.54 Aligned_cols=102 Identities=21% Similarity=0.242 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCc---hhhHHH
Q 037575 116 LYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVS---GAQLSS 192 (406)
Q Consensus 116 ~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P---~~~~s~ 192 (406)
+....+.++||..|+.++++++++.. +....+...+.++.-++++++.+.++.+... ++++-.+.. ++....
T Consensus 60 la~lGli~llF~~Gle~d~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--al~lg~~ls~tS~~vv~~ 134 (558)
T PRK10669 60 LAELGVILLMFGVGLHFSLKDLMAVK---SIAIPGAIAQIAVATLLGMALSAVLGWSLMT--GIVFGLCLSTASTVVLLR 134 (558)
T ss_pred HHHHHHHHHHHHhHhcCCHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHHHHHH
Confidence 34567788999999999999998652 2333344445555545566666677765432 232222222 222222
Q ss_pred HHHHHcCCCh---HHHHHHHHHHHHHHHHHHHH
Q 037575 193 YASFLSKGDV---AVSILLSSSTTIASVLITPL 222 (406)
Q Consensus 193 v~t~~~gGd~---ala~~~~~~stlls~~~~Pl 222 (406)
++.++-.-|. .++.....+.-+++.+.+-+
T Consensus 135 ~L~e~~~l~s~~G~~~l~~~~~~Dl~~i~~l~~ 167 (558)
T PRK10669 135 ALEERQLIDSQRGQIAIGWLIVEDLVMVLTLVL 167 (558)
T ss_pred HHHhcCcccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 3333222222 34555556666666554443
No 23
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=96.68 E-value=0.05 Score=55.13 Aligned_cols=123 Identities=15% Similarity=0.186 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHhh--hHh-HHHhHhcccchHHHHHHHHHHHHHHHhh--hhHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 037575 245 QVVLVPVALGLGLNTY--AKP-VVSFLRPVMPFVAMICTSLCIGSPLAIN--RSQILSIEGLQLVLPVLTFHAVAFAVGY 319 (406)
Q Consensus 245 ~~vllPl~lG~llr~~--~p~-~~~~i~~~l~~is~l~lllii~~~~~~n--~~~i~~~~~~~i~~~~lll~~~~f~lG~ 319 (406)
.-+++=+.+|.+++++ +++ ..+.+.+. .-.+++=..++..++.+ .+.+.+ .+.+.+...+...+++.+++
T Consensus 7 ~~i~~ii~~G~~~~~~~~l~~~~~~~ls~l---v~~~~lP~liF~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 81 (385)
T PF03547_consen 7 LPIFLIILLGYLLGRFGILDPEASKGLSKL---VFNVFLPALIFSSIANTDTLEDLLS--LWFIPVFAFIIFILGLLLGF 81 (385)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHH---HHHHHHHHHHHHHHHhccchhhhhh--hHHHHHHHHHHHHHHHHHHH
Confidence 4556667788888875 221 12222222 22233333333333332 122222 33444555666778888999
Q ss_pred HHhcccCCCCCccceeeeeeecccccH-HHHHHHHHHhcCCcccHHHHHHHHHHHH
Q 037575 320 WVSKIPSWRQGEEVSRTISLCTGMQSS-TLAGLLATQFLGSSQAVPPACSVIAMAI 374 (406)
Q Consensus 320 ~l~r~~~~~~~~~~~~a~~~~~g~rN~-~Lai~lA~~~f~~~~alp~~~y~v~q~i 374 (406)
.+.|. ++.+++.+.....+++..|. .+++.+....+++....-..+|.+.+.+
T Consensus 82 ~~~~~--~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~~~~~~~~~~~~~~~i 135 (385)
T PF03547_consen 82 LLSRL--FRLPKEWRGVFVLAASFGNTGFLGLPILQALFGERGVAYAIIFDVVNNI 135 (385)
T ss_pred HHHHh--cCCCcccceEEEecccCCcchhhHHHHHHHHhcchhhhhehHHHHhhHH
Confidence 99987 67788888888888899997 6689999999987654444444444444
No 24
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=96.59 E-value=1.1 Score=46.17 Aligned_cols=116 Identities=20% Similarity=0.239 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHH-HHHHHHH-HcCCChH--HHHHHHHHhcCchhhHH
Q 037575 116 LYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPI-LGVLIAK-AFGIPQI--FYAGFVLTACVSGAQLS 191 (406)
Q Consensus 116 ~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Pl-la~~l~~-~~~l~~~--~~~GlvL~a~~P~~~~s 191 (406)
.....+..+||..|+..+++++++..|+. ..+...--+..|. ++..... .++.+.. +..|..+ +...++..+
T Consensus 61 laelGvi~LlF~~GLE~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~al~lg~~l-~~sS~~i~~ 136 (397)
T COG0475 61 LAELGVVFLLFLIGLEFDLERLKKVGRSV---GLGVAQVGLTAPFLLGLLLLLGILGLSLIAALFLGAAL-ALSSTAIVL 136 (397)
T ss_pred HHHHhHHHHHHHHHHCcCHHHHHHhchhh---hhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH-HHHHHHHHH
Confidence 34567788999999999999999776542 2222223345553 3322222 3555543 3333333 333344455
Q ss_pred HHHHHHcCCCh---HHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC
Q 037575 192 SYASFLSKGDV---AVSILLSSSTTIASVLITPLLTGLLIGSVIPVD 235 (406)
Q Consensus 192 ~v~t~~~gGd~---ala~~~~~~stlls~~~~Pl~l~ll~g~~v~vd 235 (406)
.++.++-+-+. +......++.-+.+...+.+...+..+...+.+
T Consensus 137 ~iL~e~~~~~~~~g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~ 183 (397)
T COG0475 137 KILMELGLLKTREGQLILGALVFDDIAAILLLAIVPALAGGGSGSVG 183 (397)
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHh
Confidence 56666443333 355666667777777777776665544344333
No 25
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=96.58 E-value=0.16 Score=45.44 Aligned_cols=105 Identities=23% Similarity=0.182 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCchhhHHH-HHHH
Q 037575 118 APALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSS-YASF 196 (406)
Q Consensus 118 ~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~-v~t~ 196 (406)
..+..++-..+|++++.+++++..+.....+...+...+..=..++.+.+..+.|... .+.+++|+|.... .+++
T Consensus 50 ~~~qviiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~t----a~La~~PGGl~~m~~~A~ 125 (156)
T TIGR03082 50 ALAQVVIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLARLTGVDPLT----AFLATSPGGASEMAALAA 125 (156)
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH----HHHHhCCchHHHHHHHHH
Confidence 3444556678899999999999887766655555555555445567777777877643 3678999998766 5889
Q ss_pred HcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 037575 197 LSKGDVAVSILLSSSTTIASVLITPLLTGL 226 (406)
Q Consensus 197 ~~gGd~ala~~~~~~stlls~~~~Pl~l~l 226 (406)
..|.|...-+....+=.++-.++.|++..+
T Consensus 126 ~~gad~~~V~~~q~~Rl~~v~~~~P~i~~~ 155 (156)
T TIGR03082 126 ELGADVAFVAAMQTLRLLFVVLLVPLLARL 155 (156)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999988888888889987653
No 26
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=96.23 E-value=0.77 Score=45.64 Aligned_cols=134 Identities=17% Similarity=0.112 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHh---hccchhhHhhhhhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-
Q 037575 91 LPFVVALTAVAAL---AQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIA- 166 (406)
Q Consensus 91 ~~~~~~~~~~lgl---~~P~~~~~l~~~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~- 166 (406)
+.+.++++.+++- -.|+..+.-.+......+-.-...+|.++++.|+.+.-.+. +.... +.....=.+++.++
T Consensus 29 ~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G~~~--~~~~~-~~v~~~~~~~~~lg~ 105 (305)
T PF03601_consen 29 LLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALGWKG--LLIII-IVVILTFLLTYWLGR 105 (305)
T ss_pred HHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhCccH--HHHHH-HHHHHHHHHHHHHHH
Confidence 3455556666662 22333322211112344556667789999999999775432 33222 23333335566677
Q ss_pred HHcCCChHHHHHHHHHhcCchhhHHHH----HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037575 167 KAFGIPQIFYAGFVLTACVSGAQLSSY----ASFLSKGDVAVSILLSSSTTIASVLITPLLTGLLI 228 (406)
Q Consensus 167 ~~~~l~~~~~~GlvL~a~~P~~~~s~v----~t~~~gGd~ala~~~~~~stlls~~~~Pl~l~ll~ 228 (406)
+.+++|++.. -++-.+..=||.++.. ..+--+-|.++++..+.+-+.++++..|...+.+.
T Consensus 106 r~~~l~~~~~-~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~~~P~l~~~l~ 170 (305)
T PF03601_consen 106 RLFGLDRKLA-ILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMFLYPLLGHALG 170 (305)
T ss_pred HHhCCCHHHH-HHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHHHHHHHHHHhC
Confidence 9999988643 2222333334433332 22233568899999999999999999999987753
No 27
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=95.79 E-value=0.1 Score=51.62 Aligned_cols=164 Identities=15% Similarity=0.185 Sum_probs=84.3
Q ss_pred cCCccccchheeeccccccC---------CcccccccHHHHHHhHHHHHHHHHHHHHhhccchhhHhhhhhHHHHHHHHH
Q 037575 55 RVGLQRREGNVSLLSFGINA---------GSVVARYDSSQVLSAMLPFVVALTAVAALAQPSTFTWVSKELYAPALGGIM 125 (406)
Q Consensus 55 ~~g~~~~~~~~~~~~f~~~~---------~~~~~~~~~~~~l~~~~~~~~~~~~~lgl~~P~~~~~l~~~~~~~~l~~iM 125 (406)
.|||..-.+++.+.+...-| ..-.+- ....++. ..+-++++.++|-..++.-+.+ ++-....+.+..
T Consensus 127 ~yG~~~d~gA~~~~sl~~GPf~tm~aLga~gLA~i-p~~~lv~--lilpILiGmilGNld~~~~~~l-~~Gi~f~I~f~~ 202 (312)
T PRK12460 127 EFGDERDVGAISILSLNDGPFFTMLALGAAGLANI-PIMALVA--ALLPLVLGMILGNLDPDMRKFL-TKGGPLLIPFFA 202 (312)
T ss_pred HcCCHhhhhHHhhhhhccCcHHHHHHHHHHHHhcC-ChHHHHH--HHHHHHHHHHHhccchhhHHHH-hccceEeHHHHH
Confidence 48998888888776666666 000000 0111111 2233333444444444322222 232344555666
Q ss_pred HHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCc---hhhHHHH-HHHHcCCC
Q 037575 126 LSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVS---GAQLSSY-ASFLSKGD 201 (406)
Q Consensus 126 f~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P---~~~~s~v-~t~~~gGd 201 (406)
|.+|.+++++++.+.- +..++.++++ .++.=.+.+.+.+.++.|... |..+-.++- |++++.. ..-..+..
T Consensus 203 f~LG~~lnl~~I~~~G--~~GIlL~v~v-v~~t~~~~~~i~rllg~~~~~--g~li~stAGnAIcgpAAVaAadP~~~~~ 277 (312)
T PRK12460 203 FALGAGINLSMLLQAG--LAGILLGVLV-TIVTGFFNIFADRLVGGTGIA--GAAASSTAGNAVATPLAIAAADPSLAPV 277 (312)
T ss_pred HHhcCCeeHHHHHHhC--hHHHHHHHHH-HHHHHHHHHHHHHHhCCChhH--HHHHHHHhhHHHHHHHHHHHhchhHHHH
Confidence 8899999999998764 2334444443 334445566777888877654 333321111 1111111 22223345
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037575 202 VAVSILLSSSTTIASVLITPLLTGLL 227 (406)
Q Consensus 202 ~ala~~~~~~stlls~~~~Pl~l~ll 227 (406)
++.+...+..+.+++.++.|++..++
T Consensus 278 ~~~Ataqvaa~vivTail~P~~t~~~ 303 (312)
T PRK12460 278 AAAATAQVAASVIVTAILTPLLTSWV 303 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666554
No 28
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=95.52 E-value=5.7 Score=44.92 Aligned_cols=106 Identities=12% Similarity=0.218 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHH-HHHHHHHcCCC---h-H----HHHHHHHHhcCc
Q 037575 116 LYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPIL-GVLIAKAFGIP---Q-I----FYAGFVLTACVS 186 (406)
Q Consensus 116 ~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Pll-a~~l~~~~~l~---~-~----~~~GlvL~a~~P 186 (406)
+....+.++||..|+.++++.+++..|+ .+..++. . ++.|++ +++++..++.. . . +..|+.+. ...
T Consensus 107 la~lGlillmFliGLE~Dl~~lr~~~k~--a~~ia~~-~-~ilpf~lg~~~~~~l~~~~~~~~~~~~~l~~g~alS-~Ts 181 (832)
T PLN03159 107 MANLGLLYFLFLVGVEMDISVIRRTGKK--ALAIAIA-G-MALPFCIGLAFSFIFHQVSRNVHQGTFILFLGVALS-VTA 181 (832)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHhcchH--HHHHHHH-H-HHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH-Hhh
Confidence 3456777889999999999999866443 3333322 2 344554 34444433211 1 1 11222221 111
Q ss_pred hhhHHHHHHHHc--CCCh-HHHHHHHHHHHHHHHHHHHHHHHH
Q 037575 187 GAQLSSYASFLS--KGDV-AVSILLSSSTTIASVLITPLLTGL 226 (406)
Q Consensus 187 ~~~~s~v~t~~~--gGd~-ala~~~~~~stlls~~~~Pl~l~l 226 (406)
.++.+.++.++- +-+. .+++...+++-+++.+.+-+...+
T Consensus 182 ~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l 224 (832)
T PLN03159 182 FPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIAL 224 (832)
T ss_pred HHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122333444433 2222 456677777888887777665443
No 29
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=95.37 E-value=0.55 Score=44.35 Aligned_cols=91 Identities=19% Similarity=0.223 Sum_probs=69.7
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCchhhHHHHHHHHcCCChHHHHHHHHHHHH
Q 037575 135 EDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTI 214 (406)
Q Consensus 135 ~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~v~t~~~gGd~ala~~~~~~stl 214 (406)
++.+...||.+.++.++.+--++--...+.+++.++++++....+.-=+ =+.+.+.-.++..|||.++.+..++++-+
T Consensus 68 ~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkS--VTtpiAi~is~~iGG~~sLta~~VvitGi 145 (215)
T PF04172_consen 68 RQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPEIILSLAPKS--VTTPIAIEISEQIGGIPSLTAVFVVITGI 145 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH--hhHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 3444555666778888777777766778888999999998766654322 12333445999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 037575 215 ASVLITPLLTGLL 227 (406)
Q Consensus 215 ls~~~~Pl~l~ll 227 (406)
++.+.-|.++.++
T Consensus 146 ~Ga~~g~~llk~~ 158 (215)
T PF04172_consen 146 LGAVLGPPLLKLL 158 (215)
T ss_pred HHHHhHHHHHhHc
Confidence 9999999988875
No 30
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=95.32 E-value=0.52 Score=44.74 Aligned_cols=91 Identities=15% Similarity=0.165 Sum_probs=67.8
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCchhhHHHHHHHHcCCChHHHHHHHHHHHH
Q 037575 135 EDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTI 214 (406)
Q Consensus 135 ~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~v~t~~~gGd~ala~~~~~~stl 214 (406)
++.+...||.+.+..++.+--++--..++.+++.+|.+++....+.-=+ =+++.+.-.++..|||.++++..++++-+
T Consensus 78 ~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~i~~Sl~pkS--vTtpiAm~vs~~iGG~~sLta~~vvitGi 155 (226)
T TIGR00659 78 KQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGPEIIASLLPKS--VTTPIAMHVSEMIGGIPAVTAVFVILTGL 155 (226)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHhhhHH--hhHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 4444445666777777776666666778889999999988765443211 12333445899999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 037575 215 ASVLITPLLTGLL 227 (406)
Q Consensus 215 ls~~~~Pl~l~ll 227 (406)
++.+.-|.++.++
T Consensus 156 ~Ga~~g~~ll~~~ 168 (226)
T TIGR00659 156 LGTVFGPMVLRYF 168 (226)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999988876
No 31
>PRK05326 potassium/proton antiporter; Reviewed
Probab=95.26 E-value=5.3 Score=42.94 Aligned_cols=146 Identities=20% Similarity=0.148 Sum_probs=68.6
Q ss_pred hhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHH--HHHHHHcCCChHHHHHHHHHhcCchhhHHH
Q 037575 115 ELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILG--VLIAKAFGIPQIFYAGFVLTACVSGAQLSS 192 (406)
Q Consensus 115 ~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla--~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~ 192 (406)
......+.++||..|++++++++++..+.. +..+.+ -++.|... +...+.++.+. ..++++-++.-.+..+.
T Consensus 61 ~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~~--~~la~~--gv~~t~~~~g~~~~~l~g~~~--~~alllgai~s~Td~a~ 134 (562)
T PRK05326 61 LVGNLALAVILFDGGLRTRWSSFRPALGPA--LSLATL--GVLITAGLTGLFAHWLLGLDW--LEGLLLGAIVGSTDAAA 134 (562)
T ss_pred HHHHHHHHHHHHcCccCCCHHHHHHHHHHH--HHHHHH--HHHHHHHHHHHHHHHHhcCCH--HHHHHHhhhhccCchHH
Confidence 344677888999999999999999776542 222222 12233332 33334566643 33444333322222222
Q ss_pred HHHHH--cC--CChHHHHHH---HHHHHHHHHHHHHHHHHHHhCCccccChHHHHHHHHHHHHHHHHHHHHHHhhhHhHH
Q 037575 193 YASFL--SK--GDVAVSILL---SSSTTIASVLITPLLTGLLIGSVIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPVV 265 (406)
Q Consensus 193 v~t~~--~g--Gd~ala~~~---~~~stlls~~~~Pl~l~ll~g~~v~vd~~~l~~~ll~~vllPl~lG~llr~~~p~~~ 265 (406)
+..-+ .| -+..+...+ ..++..++++.+=+.+.+..+...+.+. .....++..+.+-+++|...++......
T Consensus 135 v~~iL~~~~l~l~~~v~~~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~G~~~g~l~~~l~ 213 (562)
T PRK05326 135 VFSLLRGKGLNLKERVASTLEIESGSNDPMAVFLTITLIELITGGETGLSW-GFLLLFLQQFGLGALIGLLGGWLLVQLL 213 (562)
T ss_pred HHHHHhccCCCcchhHHhHhhhhhhcccHHHHHHHHHHHHHHhCCCCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 22 233333222 2233455555444444444333322222 2233344455555566665555544444
Q ss_pred Hh
Q 037575 266 SF 267 (406)
Q Consensus 266 ~~ 267 (406)
++
T Consensus 214 ~~ 215 (562)
T PRK05326 214 NR 215 (562)
T ss_pred Hh
Confidence 43
No 32
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=94.74 E-value=4.2 Score=39.15 Aligned_cols=146 Identities=22% Similarity=0.233 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHH--HHHHHHHcCCChHH--HHHHHHHhcCchhhH
Q 037575 115 ELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPIL--GVLIAKAFGIPQIF--YAGFVLTACVSGAQL 190 (406)
Q Consensus 115 ~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Pll--a~~l~~~~~l~~~~--~~GlvL~a~~P~~~~ 190 (406)
......+..+||..|++++++++++..|+. ...+ .. -.+.|.. ++...+.++.+... ..|..+....|+ +.
T Consensus 45 ~l~~igl~~llF~~Gl~~d~~~l~~~~~~~--~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts~~-v~ 119 (273)
T TIGR00932 45 HLAEFGVILLMFLIGLELDLERLWKLRKAA--FGVG-VL-QVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSSTA-VV 119 (273)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHH--HHHH-HH-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhHHH-HH
Confidence 334567788899999999999999776543 2222 22 3344532 33345566655432 233333322222 22
Q ss_pred HHHHHHHc--CCCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCccccChHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHh
Q 037575 191 SSYASFLS--KGDV-AVSILLSSSTTIASVLITPLLTGLLIGSVIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPVVSF 267 (406)
Q Consensus 191 s~v~t~~~--gGd~-ala~~~~~~stlls~~~~Pl~l~ll~g~~v~vd~~~l~~~ll~~vllPl~lG~llr~~~p~~~~~ 267 (406)
..++.++- +.+. .+......++-+++.+.+-+......+.. .+.......+...+..-+..+.+.|+..+...++
T Consensus 120 ~~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (273)
T TIGR00932 120 VQVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLATSAS--TEHVALALLLLKVFLAFLLLVLLGRWLLRPVLRL 197 (273)
T ss_pred HHHHHHcCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344332 3332 35566677888888888777665543221 2222333333333444445566666655544333
No 33
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=94.74 E-value=1 Score=42.90 Aligned_cols=89 Identities=12% Similarity=0.042 Sum_probs=67.7
Q ss_pred HHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCchhhHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 037575 137 FALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIAS 216 (406)
Q Consensus 137 l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~v~t~~~gGd~ala~~~~~~stlls 216 (406)
.+...|+++.++.++.+--++--..++.+++.+|.|++....+.==+ =+++.+.-.++..||+.++++..++++-+++
T Consensus 86 ~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~~~~Sl~pKS--VTtPIAm~is~~iGG~psLtA~~ViitGi~G 163 (232)
T PRK04288 86 RDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNAVMASMLPQA--ATTAIALPVSAGIGGIKEITSFAVIFNAVII 163 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhHh--hhHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 33334566778888777777777778899999999997655543211 1233344599999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 037575 217 VLITPLLTGLL 227 (406)
Q Consensus 217 ~~~~Pl~l~ll 227 (406)
.+.-|.++.++
T Consensus 164 ai~g~~llk~~ 174 (232)
T PRK04288 164 YALGAKFLKLF 174 (232)
T ss_pred HHHHHHHHHHc
Confidence 99999998876
No 34
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=94.60 E-value=1.6 Score=43.67 Aligned_cols=103 Identities=18% Similarity=0.159 Sum_probs=79.3
Q ss_pred HHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCchhhHHH-HHHHHcCCC
Q 037575 123 GIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSS-YASFLSKGD 201 (406)
Q Consensus 123 ~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~-v~t~~~gGd 201 (406)
.+-..+|++.+.+++++..|.....+...+.-....=+.++.+.+..+.|. .-.+++.+|+|.... ..+...|.|
T Consensus 212 ~iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~----~t~~La~aPGGl~eM~l~A~~l~~d 287 (318)
T PF05145_consen 212 LIGASIGSRFTRETLRELRRLLPPALLSTLLLLALCALFAWLLSRLTGIDF----LTALLATAPGGLAEMALIALALGAD 287 (318)
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH----HHHHHHhCCccHHHHHHHHHHcCCC
Confidence 333678999999999988765555444444445555566777777777765 446788999998776 589999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037575 202 VAVSILLSSSTTIASVLITPLLTGLLIG 229 (406)
Q Consensus 202 ~ala~~~~~~stlls~~~~Pl~l~ll~g 229 (406)
+++.+...++=-+.-.++.|++..++..
T Consensus 288 ~~~V~~~q~~Rl~~v~~~~p~~~r~~~r 315 (318)
T PF05145_consen 288 VAFVAAHQVVRLLFVLLLAPFIARWLRR 315 (318)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998887653
No 35
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=94.54 E-value=0.39 Score=47.67 Aligned_cols=113 Identities=15% Similarity=0.185 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHH-Hhh--hHh-HHHhHhcccchHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 037575 244 LQVVLVPVALGLGL-NTY--AKP-VVSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGY 319 (406)
Q Consensus 244 l~~vllPl~lG~ll-r~~--~p~-~~~~i~~~l~~is~l~lllii~~~~~~n~~~i~~~~~~~i~~~~lll~~~~f~lG~ 319 (406)
+.-+++-+.+|.++ |+. .++ ..+.+.+..- .+.+=..+...+.....+..+...+.............+.++|
T Consensus 10 ilpv~~ii~lG~~~~~r~~~~~~~~~~~l~~~v~---~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 86 (321)
T TIGR00946 10 VLPILVVILLGYILGKRFGILDEEHASGINRFVI---NFALPLTIFHSISTTLADILQKSQSPVVLFLWGAFSGSYALIW 86 (321)
T ss_pred HHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778889999 764 222 2233333322 2222223333333221110111112222333334456678888
Q ss_pred HHhc-ccCCCCCccceeeeeeecccccH-HHHHHHHHHhcCCcc
Q 037575 320 WVSK-IPSWRQGEEVSRTISLCTGMQSS-TLAGLLATQFLGSSQ 361 (406)
Q Consensus 320 ~l~r-~~~~~~~~~~~~a~~~~~g~rN~-~Lai~lA~~~f~~~~ 361 (406)
.++| . ++.+++++.+..++++..|. -++..++...|+++.
T Consensus 87 ~~~~~~--~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~~G~~~ 128 (321)
T TIGR00946 87 LITKPL--FKADYGKLSGFLLVSALPNTAFIGYPLLLSLFGEEG 128 (321)
T ss_pred HHHHHH--HhcccchhhHHHHHhhhccceeehHHHHHHHhcccc
Confidence 8888 5 56677777788888888896 458999999998765
No 36
>PRK10711 hypothetical protein; Provisional
Probab=94.41 E-value=0.59 Score=44.54 Aligned_cols=90 Identities=11% Similarity=0.007 Sum_probs=68.7
Q ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCchhhHHHHHHHHcCCChHHHHHHHHHHHHH
Q 037575 136 DFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIA 215 (406)
Q Consensus 136 ~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~v~t~~~gGd~ala~~~~~~stll 215 (406)
+.+...+|.+.+..++.+--++--..++.+++.++.|++....+.==+ =+++.+.-.++..||+.++++..++++-++
T Consensus 80 q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~~~Sl~pkS--VTtPIAm~is~~iGG~~sLta~~ViitGi~ 157 (231)
T PRK10711 80 QLHQIRARWKSIISICFIGSVVAMVTGTAVALWMGATPEIAASILPKS--VTTPIAMAVGGSIGGIPAISAVCVIFVGIL 157 (231)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhhh--hhHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 333344566778888777777777778899999999998765554221 122334458999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 037575 216 SVLITPLLTGLL 227 (406)
Q Consensus 216 s~~~~Pl~l~ll 227 (406)
+.+.-|.++.++
T Consensus 158 Ga~~g~~llk~~ 169 (231)
T PRK10711 158 GAVFGHTLLNAM 169 (231)
T ss_pred HHHHHHHHHHHc
Confidence 999999998876
No 37
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=93.28 E-value=10 Score=38.27 Aligned_cols=106 Identities=14% Similarity=0.093 Sum_probs=64.5
Q ss_pred HHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-HHcCCChHHH----HHHHHHhcCchhhHHHH
Q 037575 119 PALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIA-KAFGIPQIFY----AGFVLTACVSGAQLSSY 193 (406)
Q Consensus 119 ~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~-~~~~l~~~~~----~GlvL~a~~P~~~~s~v 193 (406)
..+-.-...+|.+++++|+.+.-.+ .+..... .....=++++.++ +.+++|++.. .|.-+|++.-....+++
T Consensus 66 ~lLr~gIVLlG~~l~~~~i~~~G~~--~l~~~~~-~v~~~~~~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~ 142 (335)
T TIGR00698 66 FLLRIGITLYGFRLTFPYIADVGPN--EIVADTL-ILTSTFFLTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPV 142 (335)
T ss_pred HHHHHHHHHHCccccHHHHHHhhHH--HHHHHHH-HHHHHHHHHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHhccc
Confidence 3445566678999999999877543 2222222 1222223344555 6889987643 23333333322222222
Q ss_pred HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037575 194 ASFLSKGDVAVSILLSSSTTIASVLITPLLTGLLI 228 (406)
Q Consensus 194 ~t~~~gGd~ala~~~~~~stlls~~~~Pl~l~ll~ 228 (406)
. +--+-|.+++++.+.+-+.++++..|....++.
T Consensus 143 i-~A~~~~~a~ava~V~lfgt~am~l~P~l~~~l~ 176 (335)
T TIGR00698 143 I-KAEKEKVSVAIAIVVIFGTTGIFLYPSIYHYAS 176 (335)
T ss_pred c-CCCccceeeeehHHHHHHHHHHHHHHHHHHHHc
Confidence 2 233467889999999999999999999987764
No 38
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=93.17 E-value=10 Score=38.05 Aligned_cols=100 Identities=21% Similarity=0.193 Sum_probs=66.7
Q ss_pred HHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCchhhHHHHHHHHcCCChH
Q 037575 124 IMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVA 203 (406)
Q Consensus 124 iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~v~t~~~gGd~a 203 (406)
+++.+|.-.|+. ....||+..+.+...|+.++ .++..+..+|.++..+..+-+.+..=+. .+...+.+..-|.-
T Consensus 75 IF~GIGAmtDFg---pllanP~~~llGaaAQ~Gif--~t~~~A~~lGf~~~eAAsIgIIGgADGP-tsIf~s~~LAp~Ll 148 (360)
T PF03977_consen 75 IFMGIGAMTDFG---PLLANPKTLLLGAAAQFGIF--ATFLGAILLGFTPKEAASIGIIGGADGP-TSIFVSSKLAPHLL 148 (360)
T ss_pred HHHHHhHHHhhH---HHHhCHHHHHHHHHHHHhHH--HHHHHHHHhCCCHHHhhHhhhcccCCCc-HHHHHHHhhhHHHH
Confidence 445778766555 44689999999999999874 5666667778998888888777766554 34444444444443
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHhC
Q 037575 204 VSILLSSST-TIASVLITPLLTGLLIG 229 (406)
Q Consensus 204 la~~~~~~s-tlls~~~~Pl~l~ll~g 229 (406)
-.++....| .-+.++.-|-.+.++..
T Consensus 149 gpIaVaAYsYMaLvPiiqPpimklLtt 175 (360)
T PF03977_consen 149 GPIAVAAYSYMALVPIIQPPIMKLLTT 175 (360)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhcC
Confidence 333333333 34567888888888864
No 39
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=92.89 E-value=18 Score=40.70 Aligned_cols=26 Identities=8% Similarity=0.020 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcccCCHHHHHHHhcCc
Q 037575 119 PALGGIMLSIGIRLSIEDFALAFKRP 144 (406)
Q Consensus 119 ~~l~~iMf~~Gl~l~~~~l~~~~~~p 144 (406)
.++.++.|..|++++.+.+++.++.+
T Consensus 77 IvL~I~LFa~Gl~L~~~~Lrr~wrsV 102 (810)
T TIGR00844 77 ILLCLQVFAVSVELPRKYMLKHWVSV 102 (810)
T ss_pred HHHHHHHHHHHHhCCHHHHHHhHHHH
Confidence 57778889999999999998776544
No 40
>COG2855 Predicted membrane protein [Function unknown]
Probab=92.82 E-value=10 Score=38.04 Aligned_cols=134 Identities=16% Similarity=0.113 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHhhccchhhHhh--hhhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHH
Q 037575 91 LPFVVALTAVAALAQPSTFTWVS--KELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKA 168 (406)
Q Consensus 91 ~~~~~~~~~~lgl~~P~~~~~l~--~~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~ 168 (406)
+.+.++.++++|......-+... +......+-.-....|.+++++|+.+.--+- .....+.....=++++.+++.
T Consensus 40 l~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G~~~---v~~~~~~l~~t~~~~~~lg~~ 116 (334)
T COG2855 40 LTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVGGSG---VLIIAITLSSTFLFAYFLGKL 116 (334)
T ss_pred HHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHcCccH---HHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666733222211110 1112344445556779999999999775432 222223333444667888899
Q ss_pred cCCChHHHHHHHHHhcCchhhHHHHHH----HHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037575 169 FGIPQIFYAGFVLTACVSGAQLSSYAS----FLSKGDVAVSILLSSSTTIASVLITPLLTGLLI 228 (406)
Q Consensus 169 ~~l~~~~~~GlvL~a~~P~~~~s~v~t----~~~gGd~ala~~~~~~stlls~~~~Pl~l~ll~ 228 (406)
+++|...+ -++-+++.=||.++.+-+ .--+-|++.++..+++-..++++..|....++.
T Consensus 117 lgld~~~a-~Lia~GssICGasAiaA~~pvika~~~eva~aIa~V~lfgtia~llyP~l~~~l~ 179 (334)
T COG2855 117 LGLDKKLA-LLIAAGSSICGASAIAATAPVIKAEEEEVAVAIAVVVLFGTLAMLLYPLLYPLLG 179 (334)
T ss_pred hCCCHHHH-HHHHccchhhHHHHHHHhCCcCCCCccccceehhhHHHHHHHHHHHHHHHHHHhC
Confidence 99988643 233344444554444322 233467889999999988889999999887763
No 41
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.81 E-value=11 Score=37.48 Aligned_cols=121 Identities=21% Similarity=0.306 Sum_probs=69.7
Q ss_pred HHhhccchhhH--hhhhhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Q 037575 101 AALAQPSTFTW--VSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAG 178 (406)
Q Consensus 101 lgl~~P~~~~~--l~~~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~G 178 (406)
+|-.-|++... +...+.-..+.+.||.+|+..+.+|+..+. ...+.+-+.|..+.-++++++.+..+.+- -.|
T Consensus 43 ~gpftpGFvad~~La~~LAelGViLLmFgvGLhfslkdLLavk---~iAipgAl~qia~at~lg~gL~~~lgws~--~~g 117 (408)
T COG4651 43 AGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKDLLAVK---AIAIPGALAQIALATLLGMGLSSLLGWSF--GTG 117 (408)
T ss_pred cCCCCCCcccchhHHHHHHHhhHHHHHHhcchheeHHHHhhHH---HHhcchHHHHHHHHHHHHhHHHHHcCCCc--ccc
Confidence 34445555432 222333467788999999999999998552 22355667788888889999999887653 234
Q ss_pred HHHHhcCchhhHHHHHHHHc----------CCChHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 037575 179 FVLTACVSGAQLSSYASFLS----------KGDVAVSI-LLSSSTTIASVLITPLLTGLLI 228 (406)
Q Consensus 179 lvL~a~~P~~~~s~v~t~~~----------gGd~ala~-~~~~~stlls~~~~Pl~l~ll~ 228 (406)
++.--|...+ |.+...++ +|..+..- .+-=+..++..+..|..-..+.
T Consensus 118 lvfGlaLS~a--STVvllraLqEr~lidt~rG~iAiGwLiveDl~mVl~Lvllpa~a~~~g 176 (408)
T COG4651 118 IVFGLALSVA--STVVLLRALEERQLIDTQRGRIAIGWLIVEDLAMVLALVLLPALAGVLG 176 (408)
T ss_pred eeeeehhhhH--HHHHHHHHHHHhccccccCceEEEeehhHHHHHHHHHHHHhHHHHhhhc
Confidence 4443333333 33322211 34333221 2223345566677787776654
No 42
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=91.81 E-value=16 Score=37.11 Aligned_cols=101 Identities=19% Similarity=0.147 Sum_probs=64.6
Q ss_pred HHHHHhcccCCHHHHHHHhcCchhHHH-HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCchhhHHHHHHHHcCCC
Q 037575 123 GIMLSIGIRLSIEDFALAFKRPLPLSV-GFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGD 201 (406)
Q Consensus 123 ~iMf~~Gl~l~~~~l~~~~~~p~~~~~-~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~v~t~~~gGd 201 (406)
++++.+|.-.|+.-+ ..+|+..++ +...|+.++ .++..+..+|.+...+..+-+.+..=+.+ +...+.+..-|
T Consensus 110 LIFlGIGAMtDFgpl---lanP~~~ll~gaaAQ~GiF--~t~~~A~~lGF~~~eAAsIgIIGgADGPT-aIf~s~kLAp~ 183 (399)
T TIGR03136 110 ILFFGIGAMSDISFI---LARPWASITVALFAEMGTF--ATLVIGYYCGLTPGEAAAVGTIGGADGPM-VLFASLILAKD 183 (399)
T ss_pred HHHHhccHHhcchHH---HhChHHHHHHHHHHHhhHH--HHHHHHHHcCCCHHHhhHHhhcccCCccH-HHHHHHhhhhH
Confidence 344677876665555 688999888 788898874 45556667788888888887777665543 34344444444
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHhC
Q 037575 202 VAVSILLSSST-TIASVLITPLLTGLLIG 229 (406)
Q Consensus 202 ~ala~~~~~~s-tlls~~~~Pl~l~ll~g 229 (406)
.--+++....| .-+.++.-|-.+.++..
T Consensus 184 Llg~IaVAAYsYMaLVPiiqPpimklLtt 212 (399)
T TIGR03136 184 LFVPISIIAYLYLSLTYAGYPYLIKLLVP 212 (399)
T ss_pred hHHHHHHHHHHHHHHHhcccchHHHhhcC
Confidence 33333333333 33567777888888864
No 43
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=91.10 E-value=2.6 Score=39.97 Aligned_cols=88 Identities=24% Similarity=0.283 Sum_probs=69.3
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCchhhHHH---HHHHHcCCChHHHHHHHHH
Q 037575 135 EDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSS---YASFLSKGDVAVSILLSSS 211 (406)
Q Consensus 135 ~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~---v~t~~~gGd~ala~~~~~~ 211 (406)
++++...||++.+..+.++--++-=..++.+++.|+.+++... +.+|=.+.++ -.++..||-.++.+..+++
T Consensus 81 kq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~~~-----Sl~PkSvTTpiAm~vs~~iGGip~ltav~Vi~ 155 (230)
T COG1346 81 KQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPELIL-----SLLPKSVTTPIAMEVSESIGGIPALTAVFVIL 155 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-----HhcccccccHHHHHHHHhcCCchHHHHHHHHH
Confidence 4555555777888888777666655678889999999988644 4456555444 4899999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 037575 212 TTIASVLITPLLTGLL 227 (406)
Q Consensus 212 stlls~~~~Pl~l~ll 227 (406)
+-+++-+.-|.++..+
T Consensus 156 tGi~Gavlg~~llk~~ 171 (230)
T COG1346 156 TGILGAVLGPLLLKLL 171 (230)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998876
No 44
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=90.37 E-value=3.9 Score=40.46 Aligned_cols=97 Identities=11% Similarity=0.223 Sum_probs=52.9
Q ss_pred cchhhccCCCC---Cc---cCcCCccccchheeeccccccC---------CcccccccHHHHHHhHHHHHHHHHHHHHhh
Q 037575 40 GGLCTLACSTS---PF---VGRVGLQRREGNVSLLSFGINA---------GSVVARYDSSQVLSAMLPFVVALTAVAALA 104 (406)
Q Consensus 40 ~~~~~~~~~~~---~~---~g~~g~~~~~~~~~~~~f~~~~---------~~~~~~~~~~~~l~~~~~~~~~~~~~lgl~ 104 (406)
.+...+|+.|+ =| +|.|||..-.+++.+.+...-| .+-.+ -.+..++....|+. ++.++|-+
T Consensus 111 ~LAiiaA~~nsNggLY~aL~~qyGd~~D~gA~~i~sl~~GPf~TMi~LG~sGlA~-ip~~~lv~~ilPll--iG~ilGNL 187 (314)
T TIGR00793 111 TLALVAAMDMTNGGLYASIMQQYGTKEEAGAFVLMSLESGPLMTMVILGTAGIAS-FEPHVFVGAVLPFL--VGFALGNL 187 (314)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHcCCHhhhhhhhhhhhccCcHHHHHHHhhccCCC-CCHHHHHHHHHHHH--HHHHHhcC
Confidence 34445555554 34 3348888888888777777767 11111 12344444444442 34455555
Q ss_pred ccchhhHhhhhhHHHHHHHHHHHhcccCCHHHHHHH
Q 037575 105 QPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALA 140 (406)
Q Consensus 105 ~P~~~~~l~~~~~~~~l~~iMf~~Gl~l~~~~l~~~ 140 (406)
.|++-+.+ ++-.+..+++.-|.+|.+++++++.+.
T Consensus 188 D~~~r~fl-~~~~~~lIpFf~FaLGaginl~~i~~a 222 (314)
T TIGR00793 188 DPELRDFF-SKAVQTLIPFFAFALGNTIDLGVIIQT 222 (314)
T ss_pred CHHHHHHh-ccCCCeeeehhhhhhcCCCCHHHHHHh
Confidence 66544333 232333444555788888888777543
No 45
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=89.99 E-value=2 Score=42.68 Aligned_cols=134 Identities=16% Similarity=0.236 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHhhhHhHHHhHhcccchHH----HHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037575 245 QVVLVPVALGLGLNTYAKPVVSFLRPVMPFVA----MICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYW 320 (406)
Q Consensus 245 ~~vllPl~lG~llr~~~p~~~~~i~~~l~~is----~l~lllii~~~~~~n~~~i~~~~~~~i~~~~lll~~~~f~lG~~ 320 (406)
-..++.+++|++++.+..+..++.++-.+..+ .+.+++. -+-.+-+++.+. ++..++...+.....+.++++
T Consensus 27 ~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLl---G~~l~~~~i~~~-G~~~~~~~~~~v~~~~~~~~~ 102 (305)
T PF03601_consen 27 GALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLL---GFRLSFSDILAL-GWKGLLIIIIVVILTFLLTYW 102 (305)
T ss_pred cHHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHH---CccccHHHHHHh-CccHHHHHHHHHHHHHHHHHH
Confidence 35567888999999733333334443333322 2222222 122344555553 555555566666778889999
Q ss_pred Hh-cccCCCCCccceeeeeeecccccHHHHHHHHHHhc-CC-ccc--H-HHHHHHHHHHHHHHHHHHHHh
Q 037575 321 VS-KIPSWRQGEEVSRTISLCTGMQSSTLAGLLATQFL-GS-SQA--V-PPACSVIAMAIMGLCLASFWG 384 (406)
Q Consensus 321 l~-r~~~~~~~~~~~~a~~~~~g~rN~~Lai~lA~~~f-~~-~~a--l-p~~~y~v~q~i~~~~la~~~~ 384 (406)
++ |+ +|.|++.+.-++-.++..-.+-.++.+-.-= ++ +.+ + -+.++....+++-..++.++.
T Consensus 103 lg~r~--~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~~~P~l~~~l~ 170 (305)
T PF03601_consen 103 LGRRL--FGLDRKLAILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMFLYPLLGHALG 170 (305)
T ss_pred HHHHH--hCCCHHHHHHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHHHHHHHHHHhC
Confidence 99 88 8888776555554444444333333332211 12 222 2 223455555555555554444
No 46
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=88.90 E-value=17 Score=36.77 Aligned_cols=103 Identities=19% Similarity=0.095 Sum_probs=77.7
Q ss_pred HHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCchhhHHHH-HHHHcCC
Q 037575 122 GGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSY-ASFLSKG 200 (406)
Q Consensus 122 ~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~v-~t~~~gG 200 (406)
..+.-.+|++++...+++..|--.......+..+...=..++.+.+..+.|.. ...++.+|+|..... .+...+-
T Consensus 244 ~~iG~~IG~~f~~~~l~~~~r~~~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~----ta~La~sPGGl~~ma~~A~~l~a 319 (352)
T COG3180 244 ALIGALIGSRFDRSILREAKRLLPAILVSIIALMAIAAGMAGLLSWLTGIDLN----TAYLATSPGGLDTMAAIAAALGA 319 (352)
T ss_pred HHHHHHHcccccHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHhcCCCHH----HHHHHcCCCcHHHHHHHHHHcCC
Confidence 34446779999999998886655555555555566666667788887777754 346789999988774 7777778
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037575 201 DVAVSILLSSSTTIASVLITPLLTGLLI 228 (406)
Q Consensus 201 d~ala~~~~~~stlls~~~~Pl~l~ll~ 228 (406)
|.++-.++.++=-++-.++.|.+...+.
T Consensus 320 d~a~V~a~q~lRll~il~i~p~l~r~l~ 347 (352)
T COG3180 320 DPAFVMALQVLRLLFILLLGPALARFLS 347 (352)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988888888888777654
No 47
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=87.10 E-value=38 Score=34.59 Aligned_cols=178 Identities=15% Similarity=0.215 Sum_probs=90.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhccchhhHhh------hhhHHHHHHHHHH-HhcccCCHHHHHHHhcCchhHHHHHHHHH
Q 037575 83 SSQVLSAMLPFVVALTAVAALAQPSTFTWVS------KELYAPALGGIML-SIGIRLSIEDFALAFKRPLPLSVGFVAQY 155 (406)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~lgl~~P~~~~~l~------~~~~~~~l~~iMf-~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~ 155 (406)
-.++++|+....-++++.++...+....... +..+...+....| ++|++-+.+.+++..|+-...+.......
T Consensus 25 ki~~lqk~~IPasvIgGli~~il~~~l~~~~~~~~~f~~~l~~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~ 104 (368)
T PF03616_consen 25 KIPFLQKLFIPASVIGGLIFAILPLILGGFGGISISFDTSLQDFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLIAIILA 104 (368)
T ss_pred HhHHHHHccCCchHHHHHHHHHHHHHHHhcCceEEEechhHHHHHHHHHHHHHhhccchhhHHhhHHHHHHHHHHHHHHH
Confidence 4667778765555555565544443222111 1112333333334 77999999988876543222222211223
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHH-hcC---chhh--HHHHHHHHcC--CChHHHHHHHHHHHHHH-HHHHHHHHHH
Q 037575 156 IIKPILGVLIAKAFGIPQIFYAGFVLT-ACV---SGAQ--LSSYASFLSK--GDVAVSILLSSSTTIAS-VLITPLLTGL 226 (406)
Q Consensus 156 ~l~Plla~~l~~~~~l~~~~~~GlvL~-a~~---P~~~--~s~v~t~~~g--Gd~ala~~~~~~stlls-~~~~Pl~l~l 226 (406)
.+.=.++..++.+++++|.+ |++.- ... +++. .++.+.+.+| +-.+++.+..++..+.+ ++=.|+.=++
T Consensus 105 ~~Q~~vG~~la~l~gl~p~~--Gll~Gsi~f~GGhGTAaa~g~~fe~~~G~~~a~~vg~a~AT~Glv~G~liGgpi~~~l 182 (368)
T PF03616_consen 105 FLQNIVGLGLAKLLGLDPLF--GLLAGSIGFTGGHGTAAAFGPTFEELYGWEGATSVGMAAATFGLVVGGLIGGPIANWL 182 (368)
T ss_pred HHHHHHHHHHHHHhCCCchH--HHHhccccccCCccHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445577788888998754 54321 111 2222 3345665544 33455566666666654 4556765443
Q ss_pred HhCCc------------------------cccChHHHHHHHHHHHHHHHHHHHHHHhhhHh
Q 037575 227 LIGSV------------------------IPVDAVAMSKSILQVVLVPVALGLGLNTYAKP 263 (406)
Q Consensus 227 l~g~~------------------------v~vd~~~l~~~ll~~vllPl~lG~llr~~~p~ 263 (406)
.-... -+++..+++..+ ..+.+.+.+|..++++..+
T Consensus 183 irk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~i~~l-~~i~i~~~~G~~i~~~l~~ 242 (368)
T PF03616_consen 183 IRKGKLKPKKEPDELKEYLRKGEERPSAGRPITSSSLIEHL-ALILIAIGLGYIISALLKK 242 (368)
T ss_pred HHcCCCCCCCccccccccccccccccccccCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 31100 012233444443 4566777778777776543
No 48
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=85.99 E-value=40 Score=33.89 Aligned_cols=100 Identities=19% Similarity=0.187 Sum_probs=57.7
Q ss_pred HHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCC------ChHHHHHHHHHhcCchhhHHHHHHHH
Q 037575 124 IMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGI------PQIFYAGFVLTACVSGAQLSSYASFL 197 (406)
Q Consensus 124 iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l------~~~~~~GlvL~a~~P~~~~s~v~t~~ 197 (406)
+++.+|.-.|+.- ...+|+..+.+...|+.++ .++..+..+|. +...+..+-+.+..=+. .+...+.+
T Consensus 69 IFlGIGAmtDFgp---llanP~~~llGaaAQ~GiF--~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGP-t~If~s~~ 142 (354)
T TIGR01109 69 IFMGIGALTDFGP---LLANPRTLLLGAAAQFGIF--ATVFGALTLNFFGIISFSLPQAAAIGIIGGADGP-TAIYLSGK 142 (354)
T ss_pred HHHhccHHhhhHH---HHhChHHHHHHHHHHhhHH--HHHHHHHHhCCCcccccChhhceeeeeeccCCCc-hhhhhHhh
Confidence 4457787665554 4688999999999999874 34455555666 44555555555544332 23333433
Q ss_pred cCCChHHHHHHHHHH-HHHHHHHHHHHHHHHhC
Q 037575 198 SKGDVAVSILLSSST-TIASVLITPLLTGLLIG 229 (406)
Q Consensus 198 ~gGd~ala~~~~~~s-tlls~~~~Pl~l~ll~g 229 (406)
..-|.--+++....| .-+.++.-|-.+.++..
T Consensus 143 lap~Llg~IaVAAYsYMaLvPiiqPpimklLtt 175 (354)
T TIGR01109 143 LAPELLAAIAVAAYSYMALVPIIQPPIMKALTS 175 (354)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcccchHHHhhcC
Confidence 333333233333332 23566777888888764
No 49
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=85.71 E-value=20 Score=39.25 Aligned_cols=97 Identities=19% Similarity=0.254 Sum_probs=60.1
Q ss_pred HHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChH--HHHHHHHHhcCchhhHHHHHHHHcC-
Q 037575 123 GIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQI--FYAGFVLTACVSGAQLSSYASFLSK- 199 (406)
Q Consensus 123 ~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~--~~~GlvL~a~~P~~~~s~v~t~~~g- 199 (406)
+.+..+|+++++..+.+ +|..++..++.-++..++..++.++.++.+.. ...|+. ..+.|-.+.+....+.
T Consensus 276 lFFi~vG~~id~~~l~~---~~~~il~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~---L~~~Gef~~vl~~~a~~ 349 (621)
T PRK03562 276 LFFIAVGMSIDFGTLLE---NPLRILILLLGFLAIKIAMLWLLARPLGVPRKQRRWFAVL---LGQGGEFAFVVFGAAQM 349 (621)
T ss_pred HHHHHhhhhccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHH---HhccccHHHHHHHHHHH
Confidence 33357799999987763 44444444455677888888988898888654 334443 2345556655433321
Q ss_pred ---CChHHHHHHHHHHHHHHHHHHHHHHHH
Q 037575 200 ---GDVAVSILLSSSTTIASVLITPLLTGL 226 (406)
Q Consensus 200 ---Gd~ala~~~~~~stlls~~~~Pl~l~l 226 (406)
=|.+....++ ...+++.+++|++..+
T Consensus 350 ~~~i~~~~~~~lv-~~v~lS~~~tP~l~~~ 378 (621)
T PRK03562 350 ANVLEPEWAKLLT-LAVALSMAATPLLLVL 378 (621)
T ss_pred CCCCCHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 1444444444 3667788888887655
No 50
>PRK15086 ethanolamine utilization protein EutH; Provisional
Probab=85.44 E-value=46 Score=33.93 Aligned_cols=50 Identities=20% Similarity=0.368 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHhCCccccChHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 037575 212 TTIASVLITPLLTGLLIGSVIPVDAVAMSKSILQVVLVPVALGLGLNTYAK 262 (406)
Q Consensus 212 stlls~~~~Pl~l~ll~g~~v~vd~~~l~~~ll~~vllPl~lG~llr~~~p 262 (406)
..+.+++++|+-.. ..|-...+|...+..+++-.+++-++++..+++.-.
T Consensus 143 Gil~GiitIPiG~~-vggl~~g~~~~~il~NL~Piii~~illa~GL~~~p~ 192 (372)
T PRK15086 143 GVLAGIITIPIGCL-IGGLVAGFDFALILRNLIPVIIFAILLALGLKFIPE 192 (372)
T ss_pred HHHHHhHhhcHHHH-HHHHHHhCCHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44556666775442 222335788888999999999999999988887643
No 51
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=85.41 E-value=4.7 Score=37.35 Aligned_cols=138 Identities=19% Similarity=0.218 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhhhHhHHHhHhcccchHHHHHHHHHHHHHHHhhhhHHhh--hhhHHHHHHHHHHHHHHHHHHHHHhccc
Q 037575 248 LVPVALGLGLNTYAKPVVSFLRPVMPFVAMICTSLCIGSPLAINRSQILS--IEGLQLVLPVLTFHAVAFAVGYWVSKIP 325 (406)
Q Consensus 248 llPl~lG~llr~~~p~~~~~i~~~l~~is~l~lllii~~~~~~n~~~i~~--~~~~~i~~~~lll~~~~f~lG~~l~r~~ 325 (406)
+..+++|.++-++.+...+.. .....+....+++.+..-+..|++.+.+ ..+++.+...+...+.....|+..++.
T Consensus 2 l~~li~Gi~lG~~~~~~~~~~-~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~l- 79 (191)
T PF03956_consen 2 LIALILGILLGYFLRPPFSLI-DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLL- 79 (191)
T ss_pred eeeHHHHHHHHHHhccccccc-ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 345667777777654332111 2222233344444454445555433321 124555544444445566666777777
Q ss_pred CCCCCccceeeeeeecccccHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 037575 326 SWRQGEEVSRTISLCTGMQSSTLAGLLATQFLGSSQAVPPACSVIAMAIMGLCLASFWGSGSRIR 390 (406)
Q Consensus 326 ~~~~~~~~~~a~~~~~g~rN~~Lai~lA~~~f~~~~alp~~~y~v~q~i~~~~la~~~~~~~~~~ 390 (406)
++.+-++ +++.++|+-=-++.-.+-....+++.-.-..+..+..=++.-+...+..|+..+.
T Consensus 80 -l~~~~~~--~lav~sG~GwYSlsg~~i~~~~~~~~G~iafl~n~~RE~~a~~~~P~~~r~~~~~ 141 (191)
T PF03956_consen 80 -LGLSLKE--SLAVASGFGWYSLSGVLITQLYGPELGTIAFLSNLFREILAIILIPLLARYFGPL 141 (191)
T ss_pred -hcCCHHH--HHHHHccCcHHHhHHHHHHhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5666566 5566677777778777777777776544444555666666666677777744443
No 52
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=84.57 E-value=51 Score=33.75 Aligned_cols=101 Identities=19% Similarity=0.178 Sum_probs=59.7
Q ss_pred HHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHc------CCChHHHHHHHHHhcCchhhHHHHHHH
Q 037575 123 GIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAF------GIPQIFYAGFVLTACVSGAQLSSYASF 196 (406)
Q Consensus 123 ~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~------~l~~~~~~GlvL~a~~P~~~~s~v~t~ 196 (406)
++++.+|.-.|+.-+ ..+|+.++.+...|+.++--+ ..+..+ |.+...+..+-+.+..=+. .+...+.
T Consensus 139 LIF~GIGAMtDFgpL---lanP~~~llGaAAQ~GIF~t~--~~A~~l~~~g~~GF~~~eAAsIgIIGGADGP-TsIfvss 212 (433)
T PRK15477 139 VIFMGVGAMTDFGPL---LANPRTLLLGAAAQFGIFATV--LGALTLNYFGLISFTLPQAAAIGIIGGADGP-TAIYLSG 212 (433)
T ss_pred HHHHhccHHhcchHH---hhCHHHHHHHHHHHhhHHHHH--HHHHHHhhcccCCCChhhchheeeeccCCCc-hHHHhHh
Confidence 344677876665554 688999999999999775433 333332 5676667666666555443 3333444
Q ss_pred HcCCChHHHHHHHHHH-HHHHHHHHHHHHHHHhC
Q 037575 197 LSKGDVAVSILLSSST-TIASVLITPLLTGLLIG 229 (406)
Q Consensus 197 ~~gGd~ala~~~~~~s-tlls~~~~Pl~l~ll~g 229 (406)
+..-|.--+++....| .-+.++.-|-.+.++..
T Consensus 213 kLAP~Llg~IaVAAYSYMaLVPiIQPpimklLTT 246 (433)
T PRK15477 213 KLAPELLGAIAVAAYSYMALVPLIQPPIMKALTT 246 (433)
T ss_pred hhhhHhHHHHHHHHHHHHHHHhcccchHHHhccC
Confidence 4443333333333332 33567777888888764
No 53
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=84.52 E-value=51 Score=33.73 Aligned_cols=101 Identities=19% Similarity=0.178 Sum_probs=59.7
Q ss_pred HHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHc------CCChHHHHHHHHHhcCchhhHHHHHHH
Q 037575 123 GIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAF------GIPQIFYAGFVLTACVSGAQLSSYASF 196 (406)
Q Consensus 123 ~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~------~l~~~~~~GlvL~a~~P~~~~s~v~t~ 196 (406)
++++.+|.-.|+.-+ ..+|+.++.+...|+.++--+ ..+..+ |.+...+..+-+.+..=+. .+...+.
T Consensus 139 LIF~GIGAMtDFgpL---lanP~~~llGaAAQ~GIF~t~--~~A~~l~~~g~~GF~~~eAAsIgIIGGADGP-TsIfvss 212 (433)
T PRK15476 139 VIFMGVGAMTDFGPL---LANPRTLLLGAAAQFGIFATV--LGALTLNYFGLISFTLPQAAAIGIIGGADGP-TAIYLSG 212 (433)
T ss_pred HHHHhccHHhcchHH---hhCHHHHHHHHHHHhhHHHHH--HHHHHHhhcccCCCChhhchheeeeccCCCc-hHHHhHh
Confidence 344677876665554 688999999999999775433 333332 5676667666666555443 3333444
Q ss_pred HcCCChHHHHHHHHHH-HHHHHHHHHHHHHHHhC
Q 037575 197 LSKGDVAVSILLSSST-TIASVLITPLLTGLLIG 229 (406)
Q Consensus 197 ~~gGd~ala~~~~~~s-tlls~~~~Pl~l~ll~g 229 (406)
+..-|.--+++....| .-+.++.-|-.+.++..
T Consensus 213 kLAP~Llg~IaVAAYSYMaLVPiIQPpimklLTT 246 (433)
T PRK15476 213 KLAPELLGAIAVAAYSYMALVPLIQPPIMKALTT 246 (433)
T ss_pred hhhhHhHHHHHHHHHHHHHHHhcccchHHHhccC
Confidence 4443333333333332 33567777888888764
No 54
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=83.91 E-value=54 Score=33.55 Aligned_cols=101 Identities=19% Similarity=0.178 Sum_probs=59.8
Q ss_pred HHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHc------CCChHHHHHHHHHhcCchhhHHHHHHH
Q 037575 123 GIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAF------GIPQIFYAGFVLTACVSGAQLSSYASF 196 (406)
Q Consensus 123 ~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~------~l~~~~~~GlvL~a~~P~~~~s~v~t~ 196 (406)
++++.+|.-.|+.-+ ..+|+.++.+...|+.++--+ ..+..+ |.+...+..+-+.+..=+. .+...+.
T Consensus 139 LIF~GIGAMtDFgpL---lanP~~~llGaAAQ~GIF~t~--~~A~~l~~~g~~GF~~~eAAsIgIIGGADGP-TsIfvss 212 (433)
T PRK15475 139 VIFMGVGAMTDFGPL---LANPRTLLLGAAAQFGIFATV--LGALTLNYFGLISFTLPQAAAIGIIGGADGP-TAIYLSG 212 (433)
T ss_pred HHHHhccHHhcchHH---hhCHHHHHHHHHHHhhHHHHH--HHHHHHhhcccCCCChhhchheeeeccCCCc-hHHHhHh
Confidence 344677876665554 688999999999999875433 333332 5676667666666555443 3333444
Q ss_pred HcCCChHHHHHHHHHH-HHHHHHHHHHHHHHHhC
Q 037575 197 LSKGDVAVSILLSSST-TIASVLITPLLTGLLIG 229 (406)
Q Consensus 197 ~~gGd~ala~~~~~~s-tlls~~~~Pl~l~ll~g 229 (406)
+..-|.--+++....| .-+.++.-|-.+.++..
T Consensus 213 kLAP~Llg~IaVAAYSYMaLVPiIQPpimklLTT 246 (433)
T PRK15475 213 KLAPELLGAIAVAAYSYMALVPLIQPPIMKALTT 246 (433)
T ss_pred hhhhHhHHHHHHHHHHHHHHHhcccchHHHhccC
Confidence 4443333333333332 34567777888888764
No 55
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=82.81 E-value=7.8 Score=38.53 Aligned_cols=98 Identities=15% Similarity=0.200 Sum_probs=51.2
Q ss_pred cchhhccCCCC---CccC---cCCccccchheeeccccccC--------CcccccccHHHHHHhHHHHHHHHHHHHHhhc
Q 037575 40 GGLCTLACSTS---PFVG---RVGLQRREGNVSLLSFGINA--------GSVVARYDSSQVLSAMLPFVVALTAVAALAQ 105 (406)
Q Consensus 40 ~~~~~~~~~~~---~~~g---~~g~~~~~~~~~~~~f~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~~lgl~~ 105 (406)
.+...+|+.|+ =|++ .|||..-.+++...+..+.| ..+...-.+...+....|++ ++.++|-+.
T Consensus 111 ~LAiiaa~~~~NggLY~aL~~~yGd~~D~gA~~i~sl~~GPf~tMl~LG~sG~a~ip~~~lv~~llP~i--iG~iLGNLD 188 (314)
T PF03812_consen 111 ALAIIAAMTNSNGGLYLALMGQYGDEEDVGAFSILSLNDGPFFTMLALGASGLANIPWMSLVAALLPII--IGMILGNLD 188 (314)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhCCHHHhHHHHHHHhhhhHHHHHHHHhhccccCCCHHHHHHHHHHHH--HHHHHhcCC
Confidence 34444555444 3444 37888777887766666666 11111112444444444442 345555555
Q ss_pred cchhhHhhhhhHHHHHHHHHHHhcccCCHHHHHHH
Q 037575 106 PSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALA 140 (406)
Q Consensus 106 P~~~~~l~~~~~~~~l~~iMf~~Gl~l~~~~l~~~ 140 (406)
|++-..+ ++-....+++.-|.+|.+++++++.+.
T Consensus 189 ~~~r~fl-~~~~~~lIPF~~f~lGa~inl~~i~~a 222 (314)
T PF03812_consen 189 PDFRKFL-APGVPILIPFFGFALGAGINLSNIIKA 222 (314)
T ss_pred HHHHHHH-hcCCCeeeehhhhhhcCCCCHHHHHHh
Confidence 5543333 232333344444777777777777654
No 56
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=81.51 E-value=59 Score=35.40 Aligned_cols=97 Identities=20% Similarity=0.192 Sum_probs=59.4
Q ss_pred HHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHH--HHHHHHhcCchhhHHHHHHHHc--
Q 037575 123 GIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFY--AGFVLTACVSGAQLSSYASFLS-- 198 (406)
Q Consensus 123 ~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~--~GlvL~a~~P~~~~s~v~t~~~-- 198 (406)
+.+..+|++++++.+.+ ++..++..++..++..++..++.++.++.+...+ .|+. ..|.|-.+.++...+
T Consensus 273 lFFi~vGm~id~~~l~~---~~~~il~~~~~~l~~K~~~~~~~~~~~g~~~~~al~~g~~---L~~~Gef~~vl~~~a~~ 346 (601)
T PRK03659 273 LFFISVGMALNLGVLYT---HLLWVLISVVVLVAVKGLVLYLLARLYGLRSSERMQFAGV---LSQGGEFAFVLFSAASS 346 (601)
T ss_pred HHHHHHhhhccHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH---HhccccHHHHHHHHHHh
Confidence 33357799999988764 4454454555567788888888888888875433 3333 346666666543322
Q ss_pred -CC-ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 037575 199 -KG-DVAVSILLSSSTTIASVLITPLLTGL 226 (406)
Q Consensus 199 -gG-d~ala~~~~~~stlls~~~~Pl~l~l 226 (406)
|- +.+....+ +...+++.+++|++..+
T Consensus 347 ~g~i~~~~~~~l-v~~v~ls~~~tP~l~~~ 375 (601)
T PRK03659 347 QRLLQGDQMALL-LVVVTLSMMTTPLLMKL 375 (601)
T ss_pred CCCCCHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 21 22333333 55666777888877654
No 57
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=80.62 E-value=2.4 Score=42.96 Aligned_cols=139 Identities=14% Similarity=0.097 Sum_probs=92.0
Q ss_pred HhHHHHHHHHHHHHHhhccc---------hhhHhhh---hhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHH
Q 037575 88 SAMLPFVVALTAVAALAQPS---------TFTWVSK---ELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQY 155 (406)
Q Consensus 88 ~~~~~~~~~~~~~lgl~~P~---------~~~~l~~---~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~ 155 (406)
-+-+.+..+.+.++|..-|- +.....+ .+-..++..+++..|-++- ++.++...+.+.++..++..+
T Consensus 246 ~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGgnL~-~g~~ss~~~~~~iigiii~R~ 324 (408)
T KOG2722|consen 246 FAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGGNLI-QGLRSSALKTSVIIGIIIGRY 324 (408)
T ss_pred cCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhccccc-cCchhcccCceEEEEEEEeee
Confidence 34455666666677664441 1111111 1113456677777877765 334444455566666666799
Q ss_pred HHHHHHHHHHHHHc------C-CChHHHHHHHHHhcCchhhHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037575 156 IIKPILGVLIAKAF------G-IPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIASVLITPLLTGLL 227 (406)
Q Consensus 156 ~l~Plla~~l~~~~------~-l~~~~~~GlvL~a~~P~~~~s~v~t~~~gGd~ala~~~~~~stlls~~~~Pl~l~ll 227 (406)
+++|+.+.++.... . .||.+...+++..++|++....-+|++.|--..-+......+-.++.+.+-+|..++
T Consensus 325 illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg~itqL~g~~e~Ecs~il~W~y~va~l~ltvw~~~f 403 (408)
T KOG2722|consen 325 ILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLGTITQLNGVAERECSVILFWTYAVASLSLTVWSVFF 403 (408)
T ss_pred eccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999988766532 3 577788888999999999999999999997766677777777777766666665443
No 58
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=80.56 E-value=73 Score=32.70 Aligned_cols=108 Identities=12% Similarity=0.045 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHhcCchh-HHHHHHHHHHHHHHHHHHHHHH-cCCChHHHHHHHHHhcCchhhHHH-HH
Q 037575 118 APALGGIMLSIGIRLSIEDFALAFKRPLP-LSVGFVAQYIIKPILGVLIAKA-FGIPQIFYAGFVLTACVSGAQLSS-YA 194 (406)
Q Consensus 118 ~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~-~~~~l~~~~~l~Plla~~l~~~-~~l~~~~~~GlvL~a~~P~~~~s~-v~ 194 (406)
.+.++..++.+-++.|.+++.+.-+|.-. ...+.+...+-.++ ++.+... ++ +..+...-.+.+.-=+|.... ..
T Consensus 58 ~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~g~viG~~v-a~~l~~~~l~-~~~wk~ag~l~gsyiGGs~N~~Av 135 (378)
T PF05684_consen 58 TYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAVGTVIGAVV-AFLLFGGFLG-PEGWKIAGMLAGSYIGGSVNFVAV 135 (378)
T ss_pred HHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHhhccc-chHHHHHHHHHhcccCchhHHHHH
Confidence 44455555566668888888766543221 22222222333332 3332222 23 233333445555544444333 48
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037575 195 SFLSKGDVAVSILLSSSTTIASVLITPLLTGLL 227 (406)
Q Consensus 195 t~~~gGd~ala~~~~~~stlls~~~~Pl~l~ll 227 (406)
.+..+-|.++-..+...+++.+-+-+.+++.+-
T Consensus 136 ~~al~~~~~~~~a~~aaDnv~~~~~~~~l~~l~ 168 (378)
T PF05684_consen 136 AEALGVSDSLFAAALAADNVVMALWFAFLLALP 168 (378)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888999999999999999999988888877553
No 59
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=80.26 E-value=88 Score=33.47 Aligned_cols=26 Identities=8% Similarity=0.223 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhcccCCHHHHHHHhc
Q 037575 117 YAPALGGIMLSIGIRLSIEDFALAFK 142 (406)
Q Consensus 117 ~~~~l~~iMf~~Gl~l~~~~l~~~~~ 142 (406)
....++.+||..|.+++++++++..+
T Consensus 52 ~~~~Lp~lLF~~g~~~~~~~l~~~~~ 77 (525)
T TIGR00831 52 LFLFLPPLLFEAAMNTDLRELRENFR 77 (525)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 34577789999999999999987654
No 60
>PRK02830 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=79.33 E-value=55 Score=30.62 Aligned_cols=85 Identities=13% Similarity=0.124 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CccccChHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHhHhcccc
Q 037575 202 VAVSILLSSSTTIASVLITPLLTGLLIG--------SVIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPVVSFLRPVMP 273 (406)
Q Consensus 202 ~ala~~~~~~stlls~~~~Pl~l~ll~g--------~~v~vd~~~l~~~ll~~vllPl~lG~llr~~~p~~~~~i~~~l~ 273 (406)
..+..+.+.+.++-++++-++--.++.. ...++++..+..-++..-.+=..+-+++|++.|+..+.+..+++
T Consensus 39 ~gmGlavt~Vl~~s~~~~~~l~~~il~p~~~~~~~~~~~~l~~lr~~vfIlvIA~~V~~ve~~l~~~~p~Ly~~LGiflp 118 (202)
T PRK02830 39 FGLGIAVIVVLTITVPVNNLIYNYVLKPGALAWAGVPGVDLSFLGFITFIGVIAALVQILEMVLDKYFPALYNALGIFLP 118 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3445555555666555555554433321 12333444443333333334456788899999999999999999
Q ss_pred hHHHHHHHHHHHH
Q 037575 274 FVAMICTSLCIGS 286 (406)
Q Consensus 274 ~is~l~lllii~~ 286 (406)
.+..=|.++-...
T Consensus 119 LI~~NCaVLG~al 131 (202)
T PRK02830 119 LITVNCAIFGGVL 131 (202)
T ss_pred HHHHHHHHHHHHH
Confidence 8776665554433
No 61
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=78.05 E-value=25 Score=31.89 Aligned_cols=54 Identities=19% Similarity=0.281 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhc-ccCCCCCccceeeeeeecccccHHHHHHHHHHh
Q 037575 299 EGLQLVLPVLTFHAVAFAVGYWVSK-IPSWRQGEEVSRTISLCTGMQSSTLAGLLATQF 356 (406)
Q Consensus 299 ~~~~i~~~~lll~~~~f~lG~~l~r-~~~~~~~~~~~~a~~~~~g~rN~~Lai~lA~~~ 356 (406)
.++...+..++.+..+..+.+.++| . ++.|... +....+|.++.+-++.-|...
T Consensus 82 ~G~~~~~~~~~i~~~~~~~~~~~~~~~--~~l~~~~--~~G~~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 82 GGLKLLLLGVIITLVPLLIALVIGRYL--FKLNPGI--AAGILAGALTSTPALAAAQEA 136 (169)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHH--HHHHHHccccCcHHHHHHHHh
Confidence 3677788888888899999999998 6 6777554 556666777666666555554
No 62
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=77.15 E-value=57 Score=31.22 Aligned_cols=90 Identities=16% Similarity=0.148 Sum_probs=50.6
Q ss_pred HHHhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccceeeeeeecccccHHHHHHH--HHHhcCCc--cc
Q 037575 287 PLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIPSWRQGEEVSRTISLCTGMQSSTLAGLL--ATQFLGSS--QA 362 (406)
Q Consensus 287 ~~~~n~~~i~~~~~~~i~~~~lll~~~~f~lG~~l~r~~~~~~~~~~~~a~~~~~g~rN~~Lai~l--A~~~f~~~--~a 362 (406)
.++.|.+.+.++ .+.+...+.+=...+...+++++|. ++.+++... +..-|+.+.++++ +...-+.. ++
T Consensus 81 PLY~q~~~lk~~-~~~Il~~~~vG~~~~i~s~~~la~~--lgl~~~~~~----Sl~pKSVTtPIAm~is~~iGG~psLtA 153 (232)
T PRK04288 81 PLYKKRDVLKKY-WWQILGGIVVGSVCSVLIIYLVAKL--IQLDNAVMA----SMLPQAATTAIALPVSAGIGGIKEITS 153 (232)
T ss_pred HHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--HCcCHHHHH----HHhhHhhhHHHHHHHHHHhCCcHHHHH
Confidence 457777776664 3344455555556777888889998 788776533 3355776555554 44443322 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 037575 363 VPPACSVIAMAIMGLCLASFW 383 (406)
Q Consensus 363 lp~~~y~v~q~i~~~~la~~~ 383 (406)
+-+.+-+++..+++..+-.+.
T Consensus 154 ~~ViitGi~Gai~g~~llk~~ 174 (232)
T PRK04288 154 FAVIFNAVIIYALGAKFLKLF 174 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 444444455555544443333
No 63
>PRK01061 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=75.46 E-value=80 Score=30.42 Aligned_cols=100 Identities=13% Similarity=0.064 Sum_probs=53.4
Q ss_pred HHhcCchhhHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHh-------C---CccccChHHHHHHHHHHHHHH
Q 037575 181 LTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIASVLITPLLTGLLI-------G---SVIPVDAVAMSKSILQVVLVP 250 (406)
Q Consensus 181 L~a~~P~~~~s~v~t~~~gGd~ala~~~~~~stlls~~~~Pl~l~ll~-------g---~~v~vd~~~l~~~ll~~vllP 250 (406)
+++.||.-..|. ..+.-..+.++.+.+.++-+++.-++--.++. + +.+..+...+..-++.+-.+=
T Consensus 29 ~LG~Cp~LaVS~----~~~~a~gMGlAvtfVl~~S~~i~~~l~~~Il~p~a~~~~~~~~~~~~l~~Lr~ivfIlvIA~~V 104 (244)
T PRK01061 29 FLGMCSYLACSS----RLSTANGLGMSVALVLTVTGSINWFVHAFITGPGALTWLSPALANVNLSFLELIIFIVVIAAFT 104 (244)
T ss_pred HHhcCcchhccC----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhccccccccccchHHHHHHHHHHHHHHHH
Confidence 345566533322 22222334455555555555555555332221 1 112334444433333333344
Q ss_pred HHHHHHHHhhhHhHHHhHhcccchHHHHHHHHHH
Q 037575 251 VALGLGLNTYAKPVVSFLRPVMPFVAMICTSLCI 284 (406)
Q Consensus 251 l~lG~llr~~~p~~~~~i~~~l~~is~l~lllii 284 (406)
.++-+++|++.|+..+.+..+++.+..=|.++-.
T Consensus 105 q~vem~L~a~~p~Ly~aLGifLPLIttNCaVLG~ 138 (244)
T PRK01061 105 QILELLLEKVSRNLYLSLGIFLPLIAVNCAILGG 138 (244)
T ss_pred HHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHH
Confidence 5678889999999999999999887665555543
No 64
>PRK10711 hypothetical protein; Provisional
Probab=73.98 E-value=23 Score=33.79 Aligned_cols=91 Identities=20% Similarity=0.054 Sum_probs=51.9
Q ss_pred HHHhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccceeeeeeecccccHHHHHHH--HHHhcCCc--cc
Q 037575 287 PLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIPSWRQGEEVSRTISLCTGMQSSTLAGLL--ATQFLGSS--QA 362 (406)
Q Consensus 287 ~~~~n~~~i~~~~~~~i~~~~lll~~~~f~lG~~l~r~~~~~~~~~~~~a~~~~~g~rN~~Lai~l--A~~~f~~~--~a 362 (406)
.++.|.+.+.++ ...+.+...+=++.+...+++++|. ++.+++...+ ..-|+.+.++++ +...-+.. ++
T Consensus 76 PLY~q~~~lk~~-~~~I~~~~~vG~~v~i~s~~~l~~~--lg~~~~~~~S----l~pkSVTtPIAm~is~~iGG~~sLta 148 (231)
T PRK10711 76 PLYEQLHQIRAR-WKSIISICFIGSVVAMVTGTAVALW--MGATPEIAAS----ILPKSVTTPIAMAVGGSIGGIPAISA 148 (231)
T ss_pred HHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--HCcCHHHHHH----HhhhhhhHHHHHHHHHHhCCcHHHHH
Confidence 457777776664 3344555555566788888899998 7887775333 345776555554 44443322 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 037575 363 VPPACSVIAMAIMGLCLASFWG 384 (406)
Q Consensus 363 lp~~~y~v~q~i~~~~la~~~~ 384 (406)
+-+.+-++...+++..+-.+.+
T Consensus 149 ~~ViitGi~Ga~~g~~llk~~r 170 (231)
T PRK10711 149 VCVIFVGILGAVFGHTLLNAMR 170 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 4444455555555554433333
No 65
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=72.52 E-value=29 Score=33.01 Aligned_cols=92 Identities=22% Similarity=0.144 Sum_probs=58.7
Q ss_pred HHHHhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccceeeeeeecccccH--HHHHHHHHHhcCC--cc
Q 037575 286 SPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIPSWRQGEEVSRTISLCTGMQSS--TLAGLLATQFLGS--SQ 361 (406)
Q Consensus 286 ~~~~~n~~~i~~~~~~~i~~~~lll~~~~f~lG~~l~r~~~~~~~~~~~~a~~~~~g~rN~--~Lai~lA~~~f~~--~~ 361 (406)
..++.|.+.+.++ ++.+...+++=...+...+++++|. ++.+++..+++ --|.. ++|+-++...-+. .+
T Consensus 77 vPLYkq~~~ik~~-w~~I~~g~~vGs~~ai~s~~llak~--~g~~~~~~~Sl----~PkSvTTpiAm~vs~~iGGip~lt 149 (230)
T COG1346 77 VPLYKQRHLIKRH-WKPILAGVLVGSVVAIISGVLLAKL--FGLSPELILSL----LPKSVTTPIAMEVSESIGGIPALT 149 (230)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--hCCCHHHHHHh----cccccccHHHHHHHHhcCCchHHH
Confidence 3567888887765 4445555555567888899999999 88888764444 33554 4455555443332 24
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHh
Q 037575 362 AVPPACSVIAMAIMGLCLASFWG 384 (406)
Q Consensus 362 alp~~~y~v~q~i~~~~la~~~~ 384 (406)
++-+++-++...+++..+-...+
T Consensus 150 av~Vi~tGi~Gavlg~~llk~~~ 172 (230)
T COG1346 150 AVFVILTGILGAVLGPLLLKLLR 172 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 55566666777777776655555
No 66
>TIGR01943 rnfA electron transport complex, RnfABCDGE type, A subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit.
Probab=72.52 E-value=82 Score=29.21 Aligned_cols=99 Identities=12% Similarity=0.130 Sum_probs=52.6
Q ss_pred HHhcCchhhHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccChHHHHHHHHHHHHHHHHHHHHHHhh
Q 037575 181 LTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIASVLITPLLTGLLIGSVIPVDAVAMSKSILQVVLVPVALGLGLNTY 260 (406)
Q Consensus 181 L~a~~P~~~~s~v~t~~~gGd~ala~~~~~~stlls~~~~Pl~l~ll~g~~v~vd~~~l~~~ll~~vllPl~lG~llr~~ 260 (406)
.++.||.-..| ...+.-..++++.+.+.++-++++-++--.+. ...+.++..+..-++..-.+=..+-+.+|++
T Consensus 21 ~LG~Cp~l~vs----~~~~~a~gmGlav~~V~~~s~~~~~~i~~~il--~p~~l~~lr~~~filvIA~~V~~ve~~l~~~ 94 (190)
T TIGR01943 21 FLGLCPFLGVS----KKLETAIGMGLAVTFVMTLASVISWLVYNFIL--DPLNLEFLRTIVFILVIAALVQFVEMVVRKT 94 (190)
T ss_pred HHhcCchhhhc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566663322 22333334444555555554544444322221 2233334343333333333445577889999
Q ss_pred hHhHHHhHhcccchHHHHHHHHHHH
Q 037575 261 AKPVVSFLRPVMPFVAMICTSLCIG 285 (406)
Q Consensus 261 ~p~~~~~i~~~l~~is~l~lllii~ 285 (406)
.|+..+.+..+++.+..=|.++-..
T Consensus 95 ~p~ly~~LGiflpLI~tNCaVLG~a 119 (190)
T TIGR01943 95 SPDLYRALGIFLPLITTNCAVLGVA 119 (190)
T ss_pred ChHHHHHHhhhhhHHHHHHHHHHHH
Confidence 9999999999998876666555443
No 67
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=72.42 E-value=82 Score=29.15 Aligned_cols=127 Identities=14% Similarity=0.157 Sum_probs=67.1
Q ss_pred HHHHHHHHHhhccchhhHhhhhhHHHHHHHHHHHhcccCCHH--HHHHHh-cCchhHHHHHHHHHHHHHHHHHHHHHHcC
Q 037575 94 VVALTAVAALAQPSTFTWVSKELYAPALGGIMLSIGIRLSIE--DFALAF-KRPLPLSVGFVAQYIIKPILGVLIAKAFG 170 (406)
Q Consensus 94 ~~~~~~~lgl~~P~~~~~l~~~~~~~~l~~iMf~~Gl~l~~~--~l~~~~-~~p~~~~~~l~~~~~l~Plla~~l~~~~~ 170 (406)
.++++.++|+......... +......+..+||.+|+++..+ .+++.. -+++.+...+. ..+-.=+.++..+.+++
T Consensus 4 ~li~Gi~lG~~~~~~~~~~-~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~-tIlGSllgg~l~~~ll~ 81 (191)
T PF03956_consen 4 ALILGILLGYFLRPPFSLI-DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLA-TILGSLLGGLLASLLLG 81 (191)
T ss_pred eHHHHHHHHHHhccccccc-ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 3566777888877654333 4557888889999999888765 333333 12333322222 11111122344445555
Q ss_pred CChHHHHHHHHHhcCchhhHHH-HHHHHcCCChHHHHHHH---HHHHHHHHHHHHHHHHH
Q 037575 171 IPQIFYAGFVLTACVSGAQLSS-YASFLSKGDVAVSILLS---SSTTIASVLITPLLTGL 226 (406)
Q Consensus 171 l~~~~~~GlvL~a~~P~~~~s~-v~t~~~gGd~ala~~~~---~~stlls~~~~Pl~l~l 226 (406)
.+. ..++.+.+..-==+.|. .+++..+- ++....- ..==+++.+.+|++...
T Consensus 82 ~~~--~~~lav~sG~GwYSlsg~~i~~~~~~--~~G~iafl~n~~RE~~a~~~~P~~~r~ 137 (191)
T PF03956_consen 82 LSL--KESLAVASGFGWYSLSGVLITQLYGP--ELGTIAFLSNLFREILAIILIPLLARY 137 (191)
T ss_pred CCH--HHHHHHHccCcHHHhHHHHHHhhhCH--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 553 44554444333323444 45554333 3332222 22235799999999883
No 68
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=71.07 E-value=37 Score=34.29 Aligned_cols=94 Identities=7% Similarity=0.034 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhhh-HhHHHhHhcccchHHHHHHH-HHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHh-cc
Q 037575 248 LVPVALGLGLNTYA-KPVVSFLRPVMPFVAMICTS-LCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVS-KI 324 (406)
Q Consensus 248 llPl~lG~llr~~~-p~~~~~i~~~l~~is~l~ll-lii~~~~~~n~~~i~~~~~~~i~~~~lll~~~~f~lG~~l~-r~ 324 (406)
++-+++|++++... ++..++.++-....++-.+= -++..-+-.+-+++.+. ++..+...+......+.++++++ |+
T Consensus 35 ~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~i~~~-G~~~l~~~~~~v~~~~~~~~~~g~k~ 113 (335)
T TIGR00698 35 FLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPYIADV-GPNEIVADTLILTSTFFLTVFLGSSR 113 (335)
T ss_pred HHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHHHCccccHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667899888743 23333333333222222111 11111122344555553 55545555555566778888998 67
Q ss_pred cCCCCCccceeeeeeecccc
Q 037575 325 PSWRQGEEVSRTISLCTGMQ 344 (406)
Q Consensus 325 ~~~~~~~~~~~a~~~~~g~r 344 (406)
+|+|++.+.-++-.++..
T Consensus 114 --l~l~~~~~~Lia~GtsIC 131 (335)
T TIGR00698 114 --LKLDKQMSILLGAGSSIC 131 (335)
T ss_pred --hCCChhHHHHHHcchhHH
Confidence 788877644444444433
No 69
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=70.94 E-value=22 Score=35.70 Aligned_cols=15 Identities=13% Similarity=0.195 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHhh
Q 037575 246 VVLVPVALGLGLNTY 260 (406)
Q Consensus 246 ~vllPl~lG~llr~~ 260 (406)
+++.|++-.++.|+.
T Consensus 301 ~il~P~l~~~~~k~~ 315 (326)
T PRK05274 301 AILAPILTAWWSKRV 315 (326)
T ss_pred HHHHHHHHHHHHHHh
Confidence 444455555444433
No 70
>PRK03818 putative transporter; Validated
Probab=70.80 E-value=28 Score=37.60 Aligned_cols=101 Identities=15% Similarity=0.034 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhhhHhHHHhHhcc-cchHHHHHHHHHHHHHHHhhhhHHhh---hhhHHHHHHHHHHHHHHHHHHHHHhc
Q 037575 248 LVPVALGLGLNTYAKPVVSFLRPV-MPFVAMICTSLCIGSPLAINRSQILS---IEGLQLVLPVLTFHAVAFAVGYWVSK 323 (406)
Q Consensus 248 llPl~lG~llr~~~p~~~~~i~~~-l~~is~l~lllii~~~~~~n~~~i~~---~~~~~i~~~~lll~~~~f~lG~~l~r 323 (406)
--+++.|+++-++.++..-++.+. ...+..+.+.+.++.+=....+++.+ ..++...+..++.++.+..+++.+.+
T Consensus 34 ~g~L~~gl~~G~~~~~~~~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~ 113 (552)
T PRK03818 34 GGVLFGGIIVGHFVSQFGLTLDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLIVILGGLVTAILHK 113 (552)
T ss_pred HHHHHHHHHHhccccccCcccChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666433221111111 11233455555444332222333322 23566667777777777888888877
Q ss_pred ccCCCCCccceeeeeeecccccHHHHHHH
Q 037575 324 IPSWRQGEEVSRTISLCTGMQSSTLAGLL 352 (406)
Q Consensus 324 ~~~~~~~~~~~~a~~~~~g~rN~~Lai~l 352 (406)
. ++++... +.+.-+|....+-++.-
T Consensus 114 ~--~~~~~~~--~~G~~aGa~T~tp~l~a 138 (552)
T PRK03818 114 L--FGIPLPV--MLGIFSGAVTNTPALGA 138 (552)
T ss_pred H--hCCCHHH--HHHHhhccccccHHHHH
Confidence 7 7777664 44444555554333333
No 71
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=70.60 E-value=32 Score=32.78 Aligned_cols=90 Identities=18% Similarity=0.143 Sum_probs=48.9
Q ss_pred HHHhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccceeeeeeecccccHHHHHHH--HHHhcCCc--cc
Q 037575 287 PLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIPSWRQGEEVSRTISLCTGMQSSTLAGLL--ATQFLGSS--QA 362 (406)
Q Consensus 287 ~~~~n~~~i~~~~~~~i~~~~lll~~~~f~lG~~l~r~~~~~~~~~~~~a~~~~~g~rN~~Lai~l--A~~~f~~~--~a 362 (406)
.++.|++.+.++ ...+...+.+=...+...+++++|. ++.+++... +..-|+.+.++++ +...-++. ++
T Consensus 75 PLY~~~~~lk~~-~~~Il~~~~~G~~~~~~s~~~la~~--lg~~~~i~~----Sl~pkSvTtpiAm~vs~~iGG~~sLta 147 (226)
T TIGR00659 75 PLYKQLPQIKKY-WKEIILNVAVGSVIAIISGTLLALL--LGLGPEIIA----SLLPKSVTTPIAMHVSEMIGGIPAVTA 147 (226)
T ss_pred HHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--HCcCHHHHH----HhhhHHhhHHHHHHHHHHhCChHHHHH
Confidence 456666666654 3334444444445677788888988 778766522 3456776555554 44443322 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 037575 363 VPPACSVIAMAIMGLCLASFW 383 (406)
Q Consensus 363 lp~~~y~v~q~i~~~~la~~~ 383 (406)
.-+.+-+++..+++..+-.+.
T Consensus 148 ~~vvitGi~Ga~~g~~ll~~~ 168 (226)
T TIGR00659 148 VFVILTGLLGTVFGPMVLRYF 168 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 444445555555544443333
No 72
>PRK09903 putative transporter YfdV; Provisional
Probab=69.95 E-value=1.2e+02 Score=29.94 Aligned_cols=233 Identities=14% Similarity=0.004 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHhcCch-hhHHHHH
Q 037575 117 YAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAK-AFGIPQIFYAGFVLTACVSG-AQLSSYA 194 (406)
Q Consensus 117 ~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~-~~~l~~~~~~GlvL~a~~P~-~~~s~v~ 194 (406)
...+++..+|....+.+.++..+ +........+ .+++.-++++.+.+ .++.+........+..+.+- +-.+.-+
T Consensus 41 ~~v~lPalif~s~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~gf~G~Pl 116 (314)
T PRK09903 41 LNYALPAALFVSITRANREMIFA---DTRLTLVSLV-VIVGCFFFSWFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAV 116 (314)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHh---hhhHHHHHHH-HHHHHHHHHHHHHHHHhcCCcchhhHhhhhhcCCCcccccHHH
Confidence 44556666665555655555432 2233333323 23333355565554 44555433323333333332 2223323
Q ss_pred HHHcCCChHH-HHHHHHHHHHHHHHHHHHHHHHHhCCc----cccChHHHHHHHH-HHHHHHHHHHHHHHhh---hHhHH
Q 037575 195 SFLSKGDVAV-SILLSSSTTIASVLITPLLTGLLIGSV----IPVDAVAMSKSIL-QVVLVPVALGLGLNTY---AKPVV 265 (406)
Q Consensus 195 t~~~gGd~al-a~~~~~~stlls~~~~Pl~l~ll~g~~----v~vd~~~l~~~ll-~~vllPl~lG~llr~~---~p~~~ 265 (406)
.+..-||.+. ++...........++.|.....+.... ..-......++++ --.++...+|++++-. .|+..
T Consensus 117 ~~~~~G~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~nP~iia~~~gl~~~l~~i~lP~~i 196 (314)
T PRK09903 117 LDPIYGDSVSTGLVVAIISIIVNAITIPIGLYLLNPSSGADGKKNSNLSALISAAKEPVVWAPVLATILVLVGVKIPAAW 196 (314)
T ss_pred HHHHcCchhhhhhHHHHHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHhchHHHHHHHHHHHHHcCCCCCHHH
Confidence 4444455422 222222233345566676666554211 1101122222222 2456667777776653 45555
Q ss_pred HhHhcccchHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccceeeeeeeccccc
Q 037575 266 SFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIPSWRQGEEVSRTISLCTGMQS 345 (406)
Q Consensus 266 ~~i~~~l~~is~l~lllii~~~~~~n~~~i~~~~~~~i~~~~lll~~~~f~lG~~l~r~~~~~~~~~~~~a~~~~~g~rN 345 (406)
++.-+.+.....-+-++.++..++..+........+....=.++.+++.+.+. .. ++.++.......+++++--
T Consensus 197 ~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~~~~~~~~~~Kli~~P~i~~~~~----~~--~~l~~~~~~v~vl~aa~P~ 270 (314)
T PRK09903 197 DPTFNLIAKANSGVAVFAAGLTLAAHKFEFSAEIAYNTFLKLILMPLALLLVG----MA--CHLNSEHLQMMVLAGALPP 270 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHH----HH--cCCCcHHHHHHHHHHcccH
Confidence 44333333333333333344433332111111111111111223333333222 22 3456666677778888888
Q ss_pred HHHHHHHHHHhcCC
Q 037575 346 STLAGLLATQFLGS 359 (406)
Q Consensus 346 ~~Lai~lA~~~f~~ 359 (406)
...+..+|..|-.+
T Consensus 271 a~~~~i~A~~y~~~ 284 (314)
T PRK09903 271 AFSGIIIASRFNVY 284 (314)
T ss_pred HHHHHHHHHHHccc
Confidence 88888888887654
No 73
>PRK12456 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=69.66 E-value=84 Score=29.35 Aligned_cols=84 Identities=13% Similarity=0.171 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh----CCccccChHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHhHhcccchHHH
Q 037575 202 VAVSILLSSSTTIASVLITPLLTGLLI----GSVIPVDAVAMSKSILQVVLVPVALGLGLNTYAKPVVSFLRPVMPFVAM 277 (406)
Q Consensus 202 ~ala~~~~~~stlls~~~~Pl~l~ll~----g~~v~vd~~~l~~~ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~is~ 277 (406)
..+.++.+.+.++-++++-.+--+++. .+.+++++..+..-++..-.+=.++-+.+|++.|+..+.+..+++.+..
T Consensus 40 lgmGlAvtfVl~~s~~~~~~i~~~il~p~~l~~~~~i~~Lr~~~fIlvIA~~V~~ve~~l~a~~p~Ly~~LGiflpLI~t 119 (199)
T PRK12456 40 FGLGLTVTALLAIATPLNNLIYTYILRENALIDGVDLSFLDFITFIGVLAALVQILEMVLERFLPSLHHTLGAFLPLLTI 119 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHH
Confidence 344555555555555555554433332 1123333333332223222333567788999999999999999888766
Q ss_pred HHHHHHHH
Q 037575 278 ICTSLCIG 285 (406)
Q Consensus 278 l~lllii~ 285 (406)
=|.++-..
T Consensus 120 NCaVLG~a 127 (199)
T PRK12456 120 HCAIFGAT 127 (199)
T ss_pred HHHHHHHH
Confidence 55555443
No 74
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=69.42 E-value=29 Score=32.82 Aligned_cols=91 Identities=19% Similarity=0.128 Sum_probs=49.5
Q ss_pred HHHhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccceeeeeeecccccHHHHHHH--HHHhcCCc--cc
Q 037575 287 PLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIPSWRQGEEVSRTISLCTGMQSSTLAGLL--ATQFLGSS--QA 362 (406)
Q Consensus 287 ~~~~n~~~i~~~~~~~i~~~~lll~~~~f~lG~~l~r~~~~~~~~~~~~a~~~~~g~rN~~Lai~l--A~~~f~~~--~a 362 (406)
.++.|++.+.++ ...+......=.+.+....++++|. ++.+++... +..-|+.+.++++ +...-++. ++
T Consensus 65 PLY~~~~~l~~~-~~~il~~~~~g~~~~~~~~~~l~~~--lgl~~~~~~----Sl~pkSVTtpiAi~is~~iGG~~sLta 137 (215)
T PF04172_consen 65 PLYRQRRLLKKN-WIPILVGVLVGSLVSIFSAVLLARL--LGLSPEIIL----SLAPKSVTTPIAIEISEQIGGIPSLTA 137 (215)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--HCcCHHHHH----HHHHHHhhHHHHHHHHHHhCChHHHHH
Confidence 346666666554 3333444444445677777888888 778776533 3356777666555 43333332 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 037575 363 VPPACSVIAMAIMGLCLASFWG 384 (406)
Q Consensus 363 lp~~~y~v~q~i~~~~la~~~~ 384 (406)
.-+.+-++...+++..+-.+++
T Consensus 138 ~~VvitGi~Ga~~g~~llk~~~ 159 (215)
T PF04172_consen 138 VFVVITGILGAVLGPPLLKLLR 159 (215)
T ss_pred HHHHHHhhHHHHhHHHHHhHcc
Confidence 4444455555555555444433
No 75
>PRK05151 electron transport complex protein RsxA; Provisional
Probab=67.68 E-value=1.1e+02 Score=28.56 Aligned_cols=99 Identities=13% Similarity=0.116 Sum_probs=53.5
Q ss_pred HHhcCchhhHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccChHHHHHHHHHHHHHHHHHHHHHHhh
Q 037575 181 LTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIASVLITPLLTGLLIGSVIPVDAVAMSKSILQVVLVPVALGLGLNTY 260 (406)
Q Consensus 181 L~a~~P~~~~s~v~t~~~gGd~ala~~~~~~stlls~~~~Pl~l~ll~g~~v~vd~~~l~~~ll~~vllPl~lG~llr~~ 260 (406)
.++.||.-..|. ..+.-..+.++.+.+.++-+++.-++--+++ ...+.+...+..-++..-.+=..+-+.+|++
T Consensus 22 ~LG~Cp~laVs~----~~~~a~gmGlav~fV~~~s~~~~~~i~~~il--~p~~l~~lr~~~fIlvIA~~V~~ve~~l~~~ 95 (193)
T PRK05151 22 FLGLCPFMGVSK----KLETAIGMGLATTFVLTLASICAWLVNTYIL--IPLDLIYLRTLAFILVIAVVVQFTEMVVRKT 95 (193)
T ss_pred HHhcCchhhhcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666533222 2223334455555555555555555433322 1223334343333333333344567789999
Q ss_pred hHhHHHhHhcccchHHHHHHHHHHH
Q 037575 261 AKPVVSFLRPVMPFVAMICTSLCIG 285 (406)
Q Consensus 261 ~p~~~~~i~~~l~~is~l~lllii~ 285 (406)
.|+..+.+..+++.+..=|.++-..
T Consensus 96 ~p~Ly~~LGiflpLI~tNCaVLG~a 120 (193)
T PRK05151 96 SPTLYRLLGIFLPLITTNCAVLGVA 120 (193)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 9999999999988876665555443
No 76
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=67.51 E-value=1.6e+02 Score=30.49 Aligned_cols=105 Identities=18% Similarity=0.221 Sum_probs=54.7
Q ss_pred HHHHHHHHH-HhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCc------h-hh
Q 037575 118 APALGGIML-SIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVS------G-AQ 189 (406)
Q Consensus 118 ~~~l~~iMf-~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P------~-~~ 189 (406)
+-.+..++| .+|++-+++.+++-.|.--..+.....--++-=.++..++++.++||.+ |++. +..+ + +.
T Consensus 68 ~~~fmliFFttiglsa~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~lgidpl~--glla-gsIsl~GGHGtaAA 144 (404)
T COG0786 68 QDVFMLIFFATIGLSASFKLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKLLGLDPLI--GLLA-GSISLVGGHGTAAA 144 (404)
T ss_pred ccHHHHHHHHHhccccchhHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHH--HHHh-cceeecCCCchHHH
Confidence 334445555 7799999999997765432222111111122334566677888998864 4443 1222 1 22
Q ss_pred HHHHHHHHcCCCh--HHHHHHHHHHHHHHHHH-HHHHHHH
Q 037575 190 LSSYASFLSKGDV--AVSILLSSSTTIASVLI-TPLLTGL 226 (406)
Q Consensus 190 ~s~v~t~~~gGd~--ala~~~~~~stlls~~~-~Pl~l~l 226 (406)
.++.+.++ |-+. +++.+..+...+.+.+. .|+-=++
T Consensus 145 ~~~~f~~~-G~~~A~~va~A~ATfGlv~GgliGgpva~~l 183 (404)
T COG0786 145 WGPTFEDL-GAEGATEVAMASATFGLVAGGLIGGPVARWL 183 (404)
T ss_pred HHHHHHhc-CCcchHHHHHHHHHHHHHHhHhcCcHHHHHH
Confidence 45566666 5433 44555555555554433 3544433
No 77
>COG2855 Predicted membrane protein [Function unknown]
Probab=67.44 E-value=34 Score=34.48 Aligned_cols=83 Identities=14% Similarity=0.179 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhhhHhHHHhHhcccchHHHHHHH-HHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccc
Q 037575 247 VLVPVALGLGLNTYAKPVVSFLRPVMPFVAMICTS-LCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIP 325 (406)
Q Consensus 247 vllPl~lG~llr~~~p~~~~~i~~~l~~is~l~ll-lii~~~~~~n~~~i~~~~~~~i~~~~lll~~~~f~lG~~l~r~~ 325 (406)
.++-+++|++++.+ ++..++.++-....++..+= -++..-+-.|.+++.+. +...+....+.-...+.++|+++|+
T Consensus 40 l~lAIllGi~l~~l-~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~-G~~~v~~~~~~l~~t~~~~~~lg~~- 116 (334)
T COG2855 40 LTLAILLGILLGIL-PQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADV-GGSGVLIIAITLSSTFLFAYFLGKL- 116 (334)
T ss_pred HHHHHHHHHHHhcc-ccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHc-CccHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34455688888844 33222333333222322211 11111223456666654 5555555556666788999999998
Q ss_pred CCCCCccc
Q 037575 326 SWRQGEEV 333 (406)
Q Consensus 326 ~~~~~~~~ 333 (406)
+|.|++.
T Consensus 117 -lgld~~~ 123 (334)
T COG2855 117 -LGLDKKL 123 (334)
T ss_pred -hCCCHHH
Confidence 8888876
No 78
>PRK04972 putative transporter; Provisional
Probab=66.90 E-value=36 Score=36.75 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=41.2
Q ss_pred HHHHHHHhcccCCHHHHHHHhcC-chhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCchhhHHH
Q 037575 121 LGGIMLSIGIRLSIEDFALAFKR-PLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSS 192 (406)
Q Consensus 121 l~~iMf~~Gl~l~~~~l~~~~~~-p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~ 192 (406)
+.+-++++|++--.+=+....++ .+..+.+++ -.++.-++++.+.+.+++++....|++-=+..-++..+.
T Consensus 66 l~lF~~~vG~~~Gp~F~~~l~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~aGa~T~tp~l~~ 137 (558)
T PRK04972 66 FMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALV-MVGSALVIALGLGKLFGWDIGLTAGMLAGSMTSTPVLVG 137 (558)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHhhccccCcHHHHH
Confidence 33344677888777666544443 233444433 233333456777788999999888887644443433333
No 79
>TIGR01940 nqrE NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit. This model represents the NqrE subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=66.01 E-value=1.2e+02 Score=28.45 Aligned_cols=102 Identities=11% Similarity=0.115 Sum_probs=53.3
Q ss_pred HHhcCchhhHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CccccChHHHHHHHHHHHHHHHH
Q 037575 181 LTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIASVLITPLLTGLLIG--------SVIPVDAVAMSKSILQVVLVPVA 252 (406)
Q Consensus 181 L~a~~P~~~~s~v~t~~~gGd~ala~~~~~~stlls~~~~Pl~l~ll~g--------~~v~vd~~~l~~~ll~~vllPl~ 252 (406)
.++.||.-..|. ..+.-..+.++.+.+.++-++++-++--.++.. +.++..+..+..-++..-.+=..
T Consensus 21 ~LGlCp~l~vs~----~~~~a~gmGlAvtfV~~~s~~~~~~i~~~il~p~~~~~~~~~~~~l~~Lr~~~fIlvIA~~V~~ 96 (200)
T TIGR01940 21 FLGMCTFLAVSK----KVSTAFGLGVAVTFVLTITVPINNLIYTYILKDGALSWGGPAEVDLSFLELITFIGVIAALVQI 96 (200)
T ss_pred HHhcCchhhhcc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 345566533222 222233445555555555555554443333211 11333333333222222233345
Q ss_pred HHHHHHhhhHhHHHhHhcccchHHHHHHHHHHHH
Q 037575 253 LGLGLNTYAKPVVSFLRPVMPFVAMICTSLCIGS 286 (406)
Q Consensus 253 lG~llr~~~p~~~~~i~~~l~~is~l~lllii~~ 286 (406)
+-+.+|++.|+..+.+..+++.+..=|.++-...
T Consensus 97 vem~l~a~~p~ly~~LGiflpLI~tNCaVLG~a~ 130 (200)
T TIGR01940 97 LEMVLERFSPSLYNALGIFLPLITVNCAIFGGVL 130 (200)
T ss_pred HHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHH
Confidence 7788999999999999999988776665554433
No 80
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=62.69 E-value=2.2e+02 Score=30.49 Aligned_cols=98 Identities=16% Similarity=0.187 Sum_probs=54.4
Q ss_pred HHHH-HHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChH--HHHHHHHHhcCchhhHHHHHHHH-
Q 037575 122 GGIM-LSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQI--FYAGFVLTACVSGAQLSSYASFL- 197 (406)
Q Consensus 122 ~~iM-f~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~--~~~GlvL~a~~P~~~~s~v~t~~- 197 (406)
..++ ...|+++++..+.+ ++...+..++..++..++..+..++.++.+.. +..|+.+ ++.|..+.+....
T Consensus 282 ~plFFv~~G~~~d~~~l~~---~~~~~~~~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l---~~~Gef~lii~~~~ 355 (558)
T PRK10669 282 AVLFFVSVGMLFDPMILIQ---QPLAVLATLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASL---AQIGEFAFILAGLG 355 (558)
T ss_pred HHHHHHHhhhhcCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHH---hcccchHHHHHHHH
Confidence 3444 46699999988753 34444444444566677777777777766543 3334433 3444455543332
Q ss_pred --cC-CChHHHHHHHHHHHHHHHHHHHHHHHH
Q 037575 198 --SK-GDVAVSILLSSSTTIASVLITPLLTGL 226 (406)
Q Consensus 198 --~g-Gd~ala~~~~~~stlls~~~~Pl~l~l 226 (406)
.| =+.+... .+++.++++.+..|++...
T Consensus 356 ~~~gii~~~~~~-~~v~~~~~t~~~~P~l~~~ 386 (558)
T PRK10669 356 MALNLLPQAGQN-LVLAGAILSIMLNPVLFTL 386 (558)
T ss_pred HhCCCCCHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 22 1223222 3555667777778876654
No 81
>COG0679 Predicted permeases [General function prediction only]
Probab=60.46 E-value=1.8e+02 Score=28.73 Aligned_cols=229 Identities=16% Similarity=0.127 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-HHcCCChHHHHHHHHHhcCchhhHH-HHH
Q 037575 117 YAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIA-KAFGIPQIFYAGFVLTACVSGAQLS-SYA 194 (406)
Q Consensus 117 ~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~-~~~~l~~~~~~GlvL~a~~P~~~~s-~v~ 194 (406)
...+++.+.|..-.+-+.++. .+.+......+...+.. +..+.+. +.+..+.....+..+.++-|-...- .-.
T Consensus 41 ~~~~lP~LlF~~i~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~lg~pi 115 (311)
T COG0679 41 VYVALPALLFNSIATADLSGL----ADLGLIVASLVATLLAF-FLLALIGRFLFKLDKRETVIFALASAFPNIGFLGLPV 115 (311)
T ss_pred HHHHhHHHHHHHHHhCCcchh----hhHHHHHHHHHHHHHHH-HHHHHHHHHHhccchhhHHHHHHHHHhcccchhhHHH
Confidence 344455555554334443333 12233333333333222 3333333 3456666666677777777765433 335
Q ss_pred HHHcCCChHHHHHHHHH-HHHHHHHHHHHHHHHHhCCccccChHHHHHHHHH-HHHHHHHHHHHHHh---hhHhHHHhHh
Q 037575 195 SFLSKGDVAVSILLSSS-TTIASVLITPLLTGLLIGSVIPVDAVAMSKSILQ-VVLVPVALGLGLNT---YAKPVVSFLR 269 (406)
Q Consensus 195 t~~~gGd~ala~~~~~~-stlls~~~~Pl~l~ll~g~~v~vd~~~l~~~ll~-~vllPl~lG~llr~---~~p~~~~~i~ 269 (406)
+...-||..++...... .+.....+.-.+...-.+...+...+...++++. -.+.=.++|.+++. ..|+..++..
T Consensus 116 ~~~~~G~~gl~~~~i~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~nP~i~a~i~g~~~~~~~i~lP~~~~~~~ 195 (311)
T COG0679 116 ALSLFGEKGLAYAVIFLIIGLFLMFTLGVILLARSGGGTNKSLLSVLKKLLTNPLIIALILGLLLNLLGISLPAPLDTAV 195 (311)
T ss_pred HHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHhCcHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 55555665554444332 2222233333332222222222334445544432 24455566777764 2455444443
Q ss_pred cccchHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHH-----HHHHHHHHHHHHHHHhcccCCCCCccceeeeeeecccc
Q 037575 270 PVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLP-----VLTFHAVAFAVGYWVSKIPSWRQGEEVSRTISLCTGMQ 344 (406)
Q Consensus 270 ~~l~~is~l~lllii~~~~~~n~~~i~~~~~~~i~~~-----~lll~~~~f~lG~~l~r~~~~~~~~~~~~a~~~~~g~r 344 (406)
+.+...+.-+.++.++....... . +......... .++.+++.+. ..+. ++.+..+..++.+++++-
T Consensus 196 ~~l~~a~~pl~li~lG~~L~~~~--~-~~~~~~~~~~~~~~kll~~Pl~~~~----~~~~--~~l~~~~~~v~vl~~a~P 266 (311)
T COG0679 196 DLLASAASPLALIALGLSLAFLK--L-KGSKPPIILIALSLKLLLAPLVALL----VAKL--LGLSGLALQVLVLLSAMP 266 (311)
T ss_pred HHHHHhhhhHHHHHHhhhcchhh--h-ccccchhHHHHHHHHHHHHHHHHHH----HHHH--cCCChHHHHHHHHHhhCc
Confidence 44433333334444443333311 1 1111111111 2233334444 4444 456655555666666777
Q ss_pred cHHHHHHHHHHhcCC
Q 037575 345 SSTLAGLLATQFLGS 359 (406)
Q Consensus 345 N~~Lai~lA~~~f~~ 359 (406)
-...+..+|..+-.+
T Consensus 267 ~A~~~~v~a~~~~~~ 281 (311)
T COG0679 267 TAVNAYVLARQYGGD 281 (311)
T ss_pred HHhHHHHHHHHhCCC
Confidence 767777788775544
No 82
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=59.12 E-value=0.9 Score=45.79 Aligned_cols=138 Identities=19% Similarity=0.316 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHH--HHHHH---HcCCC--hHHHHHHHHHhcCch
Q 037575 115 ELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILG--VLIAK---AFGIP--QIFYAGFVLTACVSG 187 (406)
Q Consensus 115 ~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla--~~l~~---~~~l~--~~~~~GlvL~a~~P~ 187 (406)
.+....+..+||..|+++|.+++++..++... .++. . ...|... +.+.. ..+.+ .....|.++....|.
T Consensus 50 ~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~--~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts~~ 125 (380)
T PF00999_consen 50 LLAEIGLAFLLFEAGLELDIKELRRNWRRALA--LGLV-G-FLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATSPA 125 (380)
T ss_dssp SSHHHHS--SSHHHHTTGGGG-----------------------------------------------TTHHHHTT--HH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccccccc--cccc-e-eeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhccccc
Confidence 44567788899999999999999977665322 2211 2 2333333 23322 22333 233345555555555
Q ss_pred hhHHHHHHHHc--CCCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCccccChHHHHHHHHHHHHHHHHHHHHHH
Q 037575 188 AQLSSYASFLS--KGDV-AVSILLSSSTTIASVLITPLLTGLLIGSVIPVDAVAMSKSILQVVLVPVALGLGLN 258 (406)
Q Consensus 188 ~~~s~v~t~~~--gGd~-ala~~~~~~stlls~~~~Pl~l~ll~g~~v~vd~~~l~~~ll~~vllPl~lG~llr 258 (406)
.+ ..+..+.- +.+. .+......++.+.+.+...+..... +.....+.......++..+..=..+|...+
T Consensus 126 ~v-~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (380)
T PF00999_consen 126 IV-SPVLKELGLLPSRLGRLLLSESVINDIIAIILLSILISLA-QASGQSSLGQLLLSFLWIILIGIVIGLLFG 197 (380)
T ss_dssp HH-HHHH-HHHT-SSTTHHHHTTTTTTTTTTTTTTT--------------------------------------
T ss_pred ch-hhhhhhhhcccccccchhhhhchhhccchhhhhhhhhhhh-cccccccccchhcchhhhhhhheeeecccc
Confidence 43 33443333 3333 4555667778888888888877666 334444444433333333333333333333
No 83
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=56.47 E-value=2.9e+02 Score=29.89 Aligned_cols=54 Identities=17% Similarity=0.221 Sum_probs=32.0
Q ss_pred HHhcccCCHHHHHHHhcC-chhHHHHHHHHHHHHH-HHHHHHH-HHcCCChHHHHHHHH
Q 037575 126 LSIGIRLSIEDFALAFKR-PLPLSVGFVAQYIIKP-ILGVLIA-KAFGIPQIFYAGFVL 181 (406)
Q Consensus 126 f~~Gl~l~~~~l~~~~~~-p~~~~~~l~~~~~l~P-lla~~l~-~~~~l~~~~~~GlvL 181 (406)
.++|++--.+=+....++ .+..+.+.+ ..+.| ++++.++ +++++++....|.+-
T Consensus 459 a~vG~~aG~~f~~~l~~~G~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~G~~a 515 (562)
T TIGR03802 459 AVVGLSAGPQAVTAIKEMGLTLFLLGIV--VTILPLIITMLIGKYVLKYDPALLLGALA 515 (562)
T ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHHHH--HHHHHHHHHHHHHHHHhCCCHHHHHHHhh
Confidence 456777665555433332 233334433 34455 5577777 589999998888754
No 84
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=56.07 E-value=2.5e+02 Score=29.04 Aligned_cols=139 Identities=17% Similarity=0.163 Sum_probs=68.7
Q ss_pred HHHHHHhHHHHHHHHHHHHH---hh-ccchhhH---hhhhhHHHHHHHHHH-HhcccCCHHHHHHHhcCchhHHHHH-HH
Q 037575 83 SSQVLSAMLPFVVALTAVAA---LA-QPSTFTW---VSKELYAPALGGIML-SIGIRLSIEDFALAFKRPLPLSVGF-VA 153 (406)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~lg---l~-~P~~~~~---l~~~~~~~~l~~iMf-~~Gl~l~~~~l~~~~~~p~~~~~~l-~~ 153 (406)
-.++++|+...--+++++++ .. .|..... +.+. +...+...+| ++|++-+++++++.-| |-.....+ ..
T Consensus 25 kv~~Lqk~~IPapViGGll~al~l~l~~~~~~~~~~fd~~-l~~~lm~~fFatigLga~~~~l~~gg~-~l~~~~~~~~~ 102 (398)
T TIGR00210 25 KIKFLKSFNIPEPVVGGVLVALALLLIYKIFGTEVNFDFS-LRDPLMLIFFTTIGLSANFKSLLKGGK-PLLIFLATAVG 102 (398)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHhccEEEEcChh-HHHHHHHHHHHHhhhcCChHHHHhChH-HHHHHHHHHHH
Confidence 46677787555444555543 21 2433211 1112 2222333334 7799999888875432 22111111 11
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHH-HhcCchh-----hHHHHHHHHcC--CChHHHHHHHHHHHHHHHHHH-HHHH
Q 037575 154 QYIIKPILGVLIAKAFGIPQIFYAGFVL-TACVSGA-----QLSSYASFLSK--GDVAVSILLSSSTTIASVLIT-PLLT 224 (406)
Q Consensus 154 ~~~l~Plla~~l~~~~~l~~~~~~GlvL-~a~~P~~-----~~s~v~t~~~g--Gd~ala~~~~~~stlls~~~~-Pl~l 224 (406)
-.+..=.++..++..++++|.+ |++. ....-+| ..+..+.+.+| +..+++.+..++..+.+.+.= |+.=
T Consensus 103 l~~~Qn~vGv~la~~~gl~P~~--Gll~gsi~~~GGHGTAaA~g~~f~e~~G~~~a~~lgla~AT~GLv~g~liGgpi~~ 180 (398)
T TIGR00210 103 FLVIQNAVGIGMASLLGQAPLM--GLLAGSITLSGGHGTGAAWSPVFYDNYGFRNATEIAIACATFGLVFGGIIGGPVAK 180 (398)
T ss_pred HHHHHHHHHHHHHHHcCCChHH--HHHhhCccCCCCCcHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233335567777889998854 5552 2333332 23445655544 344556666666666655543 4443
Q ss_pred H
Q 037575 225 G 225 (406)
Q Consensus 225 ~ 225 (406)
+
T Consensus 181 ~ 181 (398)
T TIGR00210 181 F 181 (398)
T ss_pred H
Confidence 3
No 85
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=55.65 E-value=2.6e+02 Score=30.30 Aligned_cols=69 Identities=20% Similarity=0.169 Sum_probs=44.9
Q ss_pred HHHHHHHHhcccCCHHHHHHHhcC-chhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCchhh
Q 037575 120 ALGGIMLSIGIRLSIEDFALAFKR-PLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQ 189 (406)
Q Consensus 120 ~l~~iMf~~Gl~l~~~~l~~~~~~-p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~ 189 (406)
.+.+-+|++|++.-++=++...|+ .+..+.+++. .+..=++++++.+++++|+..+.|++-=+..-++.
T Consensus 63 gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~~~~a~~~-~~~~~~~~~~~~~~~g~~~~~~~Gl~aGalT~tp~ 132 (562)
T TIGR03802 63 FFALFIFAIGYEVGPQFFASLKKDGLREIILALVF-AVSGLITVYALAKIFGLDKGTAAGLAAGGLTQSAV 132 (562)
T ss_pred HHHHHHHHhhhccCHHHHHHHHhccHHHHHHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHhchhhccHH
Confidence 344444788999998877665554 3444444443 33444667788889999999999987644443333
No 86
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=54.53 E-value=2.7e+02 Score=31.77 Aligned_cols=103 Identities=12% Similarity=0.046 Sum_probs=50.0
Q ss_pred HHH-HHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCchhhHHHHHHHH--cC
Q 037575 123 GIM-LSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFL--SK 199 (406)
Q Consensus 123 ~iM-f~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~v~t~~--~g 199 (406)
.++ ..+|+++++..+.+. .........+++.++..-+.+++.++.++.+...+..+-+.. .+-|....+.... ..
T Consensus 329 PlFFv~vGl~idl~~l~~~-~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm-~~kG~~~Lii~~ig~~~ 406 (832)
T PLN03159 329 PLFFAISGLKTNVTKIQGP-ATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLM-NTKGLVEMIVLNVGRDQ 406 (832)
T ss_pred HHHHHHhhheeeHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH-hcccHHHHHHHHHHHhc
Confidence 344 467999999776421 011111122222334444556666677777654333322222 2333333332221 11
Q ss_pred C--ChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037575 200 G--DVAVSILLSSSTTIASVLITPLLTGLL 227 (406)
Q Consensus 200 G--d~ala~~~~~~stlls~~~~Pl~l~ll 227 (406)
| |.+....++....+.+.++.|++..++
T Consensus 407 gvi~~~~f~~lVl~avl~T~i~~Plv~~ly 436 (832)
T PLN03159 407 EVLDDESFAVMVLVAVAMTALITPVVTVVY 436 (832)
T ss_pred CccCchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 2 344444455555567778888877654
No 87
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=54.51 E-value=3.1e+02 Score=29.66 Aligned_cols=49 Identities=18% Similarity=0.114 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhcccCCHHHHHHHhcCch-hHHHHHHHHHHHHHHHHHHH
Q 037575 117 YAPALGGIMLSIGIRLSIEDFALAFKRPL-PLSVGFVAQYIIKPILGVLI 165 (406)
Q Consensus 117 ~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~-~~~~~l~~~~~l~Plla~~l 165 (406)
....++.++|-.|.+++.+++++.++.-. ....+.+++.++.-...+.+
T Consensus 69 ~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~ 118 (559)
T TIGR00840 69 FLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGI 118 (559)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999998765422 12333334444444444433
No 88
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=52.13 E-value=2e+02 Score=29.72 Aligned_cols=84 Identities=17% Similarity=0.168 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCccce---eeeeeecccccHHHHHHHHH-Hhc--CCc--ccHH-HHHHHHHHHHH
Q 037575 305 LPVLTFHAVAFAVGYWVSKIPSWRQGEEVS---RTISLCTGMQSSTLAGLLAT-QFL--GSS--QAVP-PACSVIAMAIM 375 (406)
Q Consensus 305 ~~~lll~~~~f~lG~~l~r~~~~~~~~~~~---~a~~~~~g~rN~~Lai~lA~-~~f--~~~--~alp-~~~y~v~q~i~ 375 (406)
.....+...++.+|..+++. ++.++.-- -+++++.|. -++.|..=.. ..+ ++. .++. +++..+...++
T Consensus 98 ~~~~~l~~~Qn~vGv~la~~--~gl~P~~Gll~gsi~~~GGH-GTAaA~g~~f~e~~G~~~a~~lgla~AT~GLv~g~li 174 (398)
T TIGR00210 98 ATAVGFLVIQNAVGIGMASL--LGQAPLMGLLAGSITLSGGH-GTGAAWSPVFYDNYGFRNATEIAIACATFGLVFGGII 174 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHH--cCCChHHHHHhhCccCCCCC-cHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHH
Confidence 34445667888899888887 67766432 246676554 4344433222 222 232 2333 45567788889
Q ss_pred HHHHHHHHhcCccccc
Q 037575 376 GLCLASFWGSGSRIRD 391 (406)
Q Consensus 376 ~~~la~~~~~~~~~~~ 391 (406)
|..++++..||++.++
T Consensus 175 Ggpi~~~lirk~~l~~ 190 (398)
T TIGR00210 175 GGPVAKFLIIRNKLEP 190 (398)
T ss_pred HHHHHHHHHHcCCCCC
Confidence 9999998888777643
No 89
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=51.34 E-value=1.1e+02 Score=30.49 Aligned_cols=100 Identities=19% Similarity=0.217 Sum_probs=59.9
Q ss_pred HHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCchhhHHHHHHHHcCCChH
Q 037575 124 IMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVA 203 (406)
Q Consensus 124 iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~v~t~~~gGd~a 203 (406)
+++.+|...|+.-+ ..+|+.++.+-..|+.++ .++..+..++.++..+..+-+.+..=+.+ +...+...--|.-
T Consensus 90 IFmGvGAmTDFgpl---lanPktllLGaAAQ~GIF--~t~~~A~~lgf~~~eAasIgIIGGADGPT-aIy~t~~LAP~Ll 163 (375)
T COG1883 90 IFMGVGAMTDFGPL---LANPKTLLLGAAAQFGIF--ATVFGALALGFTPKEAASIGIIGGADGPT-AIYLTNKLAPELL 163 (375)
T ss_pred HHhccchhcccchh---hcCcHHHHhhhHHHhchH--HHHHHHHHhCCCHhhhhheeeeccCCCCc-eEEeccccCHHHH
Confidence 34566766655554 688999999999999874 44555566788887777776655544332 2333333333332
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHhC
Q 037575 204 VSILLSSST-TIASVLITPLLTGLLIG 229 (406)
Q Consensus 204 la~~~~~~s-tlls~~~~Pl~l~ll~g 229 (406)
-+++....| ..+.++.=|.....+..
T Consensus 164 ~~iAvAAYSYMALVPiIQPpimkaLTt 190 (375)
T COG1883 164 GAIAVAAYSYMALVPIIQPPIMKALTT 190 (375)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHhcC
Confidence 233333333 33456677888887764
No 90
>PRK01030 tetrahydromethanopterin S-methyltransferase subunit C; Provisional
Probab=51.24 E-value=2.4e+02 Score=27.42 Aligned_cols=42 Identities=19% Similarity=0.198 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCccceeeeeeecccccHHHHHHH
Q 037575 307 VLTFHAVAFAVGYWVSKIPSWRQGEEVSRTISLCTGMQSSTLAGLL 352 (406)
Q Consensus 307 ~lll~~~~f~lG~~l~r~~~~~~~~~~~~a~~~~~g~rN~~Lai~l 352 (406)
.++|-+.++.+-|=+--- +|.||++.||+.. +.-+..++..+
T Consensus 168 Al~FI~~~mAIlHPFNAC--LGP~E~q~RTL~l--a~e~G~ls~ii 209 (264)
T PRK01030 168 ALLFILGGMAILHPFNAC--LGPNESQDRTLTL--AVECGFLSMII 209 (264)
T ss_pred HHHHHHHHHHhcCccccc--cCCCcchhHHHHH--HHHHHHHHHHH
Confidence 344444455544433333 6788888888765 33343444443
No 91
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=45.63 E-value=2.3e+02 Score=25.59 Aligned_cols=82 Identities=16% Similarity=0.216 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcccCCHHHHHHHhcC-chhHHHHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHhcCchhhHHHHHHH
Q 037575 119 PALGGIMLSIGIRLSIEDFALAFKR-PLPLSVGFVAQYIIKPILGVLIAK-AFGIPQIFYAGFVLTACVSGAQLSSYASF 196 (406)
Q Consensus 119 ~~l~~iMf~~Gl~l~~~~l~~~~~~-p~~~~~~l~~~~~l~Plla~~l~~-~~~l~~~~~~GlvL~a~~P~~~~s~v~t~ 196 (406)
..+.+-++.+|++--.+=+....++ .+....++++ .++-.++++.+++ .+++|+....|.+-=+..-++..+.....
T Consensus 58 ~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i-~~~~~~~~~~~~~~~~~l~~~~~~G~~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 58 LGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVII-TLVPLLIALVIGRYLFKLNPGIAAGILAGALTSTPALAAAQEA 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHccccCcHHHHHHHHh
Confidence 3444555677877776544443333 2334444332 3344455777887 89999998888765433333333333333
Q ss_pred HcCCC
Q 037575 197 LSKGD 201 (406)
Q Consensus 197 ~~gGd 201 (406)
..+.|
T Consensus 137 ~~~~~ 141 (169)
T PF06826_consen 137 ISDSG 141 (169)
T ss_pred hhcCC
Confidence 24433
No 92
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=43.60 E-value=3.6e+02 Score=27.19 Aligned_cols=63 Identities=14% Similarity=0.236 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHH--HHhhccchhhHhhhhhHHHHHHHHH-HHhcccCCHHHHHHHhcCchhHHHHHHH
Q 037575 89 AMLPFVVALTAV--AALAQPSTFTWVSKELYAPALGGIM-LSIGIRLSIEDFALAFKRPLPLSVGFVA 153 (406)
Q Consensus 89 ~~~~~~~~~~~~--lgl~~P~~~~~l~~~~~~~~l~~iM-f~~Gl~l~~~~l~~~~~~p~~~~~~l~~ 153 (406)
.+..+.++.+++ +|+..-+...-.....+.|.+..+| ++.|+...-.++. .|--+.++.++.+
T Consensus 115 ~yl~~l~lA~iIA~iGLl~nS~avIIGAMlIaPlmgPi~a~a~g~~~~d~~L~--~rsl~~l~~g~~~ 180 (325)
T TIGR00341 115 GRSVVTILAGIIALSGLIMNNAVILIGAMIIAPLLGPIHGFAVNLSVGDVKLA--FRSAKNLLFDLFL 180 (325)
T ss_pred hHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHH--HHHHHHHHHHHHH
Confidence 344444444444 3777766655544466778777777 7878777655554 2323334444443
No 93
>PF07854 DUF1646: Protein of unknown function (DUF1646); InterPro: IPR012443 Some of the members of this family are hypothetical bacterial and archaeal proteins, but others are annotated as being cation transporters expressed by the archaeon Methanosarcina mazei (Methanosarcina frisia) (Q8PXG5 from SWISSPROT, Q8PXG7 from SWISSPROT and Q8PXG8 from SWISSPROT).
Probab=42.00 E-value=2.3e+02 Score=28.57 Aligned_cols=36 Identities=17% Similarity=-0.029 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccchhhccccCCcC
Q 037575 367 CSVIAMAIMGLCLASFWGSGSRIRDLTNILNWHSSS 402 (406)
Q Consensus 367 ~y~v~q~i~~~~la~~~~~~~~~~~~~~~~~~~~~~ 402 (406)
.|.+-..+.-++++.+..+|++.|+...+..|+||+
T Consensus 185 ~yIi~~vl~~gll~~~~~~~~~~~~~~~~~~~~~e~ 220 (347)
T PF07854_consen 185 IYIIPGVLALGLLAAFFLKREKPREEGVEAIEYEES 220 (347)
T ss_pred HHHHHHHHHHHHHHHHHhCccccchhhhhcccchhH
Confidence 355556666777777777777666655455554443
No 94
>PRK04972 putative transporter; Provisional
Probab=41.99 E-value=4.8e+02 Score=28.21 Aligned_cols=22 Identities=9% Similarity=0.163 Sum_probs=11.0
Q ss_pred HHHHHhHHHHHHHHHHHHHhhc
Q 037575 84 SQVLSAMLPFVVALTAVAALAQ 105 (406)
Q Consensus 84 ~~~l~~~~~~~~~~~~~lgl~~ 105 (406)
.+++.+++.+.+.++..+|+.+
T Consensus 6 ~~~l~~~~~~~lf~~i~lG~~l 27 (558)
T PRK04972 6 ADLLNGNYILLLFVVLALGLCL 27 (558)
T ss_pred HHHhccCChHHHHHHHHHHHhh
Confidence 4444455555555555555544
No 95
>PF02508 Rnf-Nqr: Rnf-Nqr subunit, membrane protein; InterPro: IPR003667 The rnf genes of Rhodobacter capsulatus, essential for nitrogen fixation, are thought to encode a system for electron transport to nitrogenase. The rnfABCDGEH operon comprises seven genes that show similarities in gene arrangement and deduced protein sequences to homologous regions in the genomes of Haemophilus influenzae and Escherichia coli. Four of the rnf gene products were found to be similar in sequence to components of an Na+-dependent NADH:ubiquinone oxidoreductase (NQR) from Vibrio alginolyticus []. The NQR-type enzyme of Klebsiella pneumoniae was shown to catalyse sodium-dependent NADH oxidation in the respiratory chain [].; GO: 0016020 membrane
Probab=41.84 E-value=2.9e+02 Score=25.54 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhhHhHHHhHhcccchHHHHHHHHHH
Q 037575 249 VPVALGLGLNTYAKPVVSFLRPVMPFVAMICTSLCI 284 (406)
Q Consensus 249 lPl~lG~llr~~~p~~~~~i~~~l~~is~l~lllii 284 (406)
+=..+-+.+|++.|+..+.+..+++.+..=|+++-.
T Consensus 82 ~v~~v~~~l~~~~p~l~~~LgiylpLi~~Nc~VLg~ 117 (190)
T PF02508_consen 82 LVQLVEMVLRAYFPSLYKALGIYLPLITVNCAVLGR 117 (190)
T ss_pred HHHHHHHHHHHHCHHHHHHHHHhhhHHHHHHHHHHH
Confidence 334578889999999998888888876655544433
No 96
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=41.39 E-value=3.8e+02 Score=26.90 Aligned_cols=92 Identities=15% Similarity=-0.035 Sum_probs=41.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHh----CCccccChHHHHHHHHHHHHHHHHHHHHHHhhh-------------
Q 037575 199 KGDVAVSILLSSSTTIASVLITPLLTGLLI----GSVIPVDAVAMSKSILQVVLVPVALGLGLNTYA------------- 261 (406)
Q Consensus 199 gGd~ala~~~~~~stlls~~~~Pl~l~ll~----g~~v~vd~~~l~~~ll~~vllPl~lG~llr~~~------------- 261 (406)
+-|.-..+-....-|++-..-.|+++.... ....+.++..-+..-+..+-.+..+-..+++..
T Consensus 39 ~~D~~~~T~~al~~tll~alp~pl~~~~~g~~L~~~~~~~~~~~~l~~~l~~~a~~~~~~~~~~~l~rp~Gl~~~HF~w~ 118 (340)
T PF12794_consen 39 RQDSFSHTPRALLLTLLLALPLPLLLLAIGYLLQFAAWSSPFSVALGAALLAMALFWLVFEFFRRLLRPNGLAERHFGWP 118 (340)
T ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEeccCCCC
Confidence 355555555555555555555565553321 111223322223333334444444444444432
Q ss_pred HhHHHhHhcccchHHHHHHHHHHHHHHHh
Q 037575 262 KPVVSFLRPVMPFVAMICTSLCIGSPLAI 290 (406)
Q Consensus 262 p~~~~~i~~~l~~is~l~lllii~~~~~~ 290 (406)
++..++.++.++.+..+.+.++....++.
T Consensus 119 ~~~~~~~r~~l~~~~~~~~pl~~~~~~~~ 147 (340)
T PF12794_consen 119 KERVQRLRRQLRWLIWVLVPLLFISIFAE 147 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22345555666665555555555444443
No 97
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=41.04 E-value=2.8e+02 Score=30.58 Aligned_cols=33 Identities=18% Similarity=0.125 Sum_probs=22.6
Q ss_pred HHHHHHH-HHHHHHHcCCChHHHHHHHHHhcCch
Q 037575 155 YIIKPIL-GVLIAKAFGIPQIFYAGFVLTACVSG 187 (406)
Q Consensus 155 ~~l~Pll-a~~l~~~~~l~~~~~~GlvL~a~~P~ 187 (406)
|-.+|.+ +|-.++-|+-+|.+...+-...+.|.
T Consensus 154 FyFLPi~ia~saAkkf~~np~lg~~ig~~L~~P~ 187 (627)
T PRK09824 154 FFFFPIILGYTAGKKFGGNPFTAMVIGGALVHPL 187 (627)
T ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHChh
Confidence 5566775 78888899999866555544555564
No 98
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=38.62 E-value=3.1e+02 Score=25.00 Aligned_cols=63 Identities=13% Similarity=0.169 Sum_probs=37.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccChHHHHHHHH--HHHHHHHHHHHHHHhhhHhHH
Q 037575 201 DVAVSILLSSSTTIASVLITPLLTGLLIGSVIPVDAVAMSKSIL--QVVLVPVALGLGLNTYAKPVV 265 (406)
Q Consensus 201 d~ala~~~~~~stlls~~~~Pl~l~ll~g~~v~vd~~~l~~~ll--~~vllPl~lG~llr~~~p~~~ 265 (406)
|.........++.+++.++.|+....+..+ +.....+..++. ...+.-+.++..+.++.++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~il~r~l~~~--~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~ 68 (273)
T PF01943_consen 4 NSLWLFLSNILSALIGFITIPILARYLGPE--EYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYK 68 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCHH--HhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 445566777788899999999988876422 223333333332 233345556666665555433
No 99
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=38.46 E-value=1.9e+02 Score=29.71 Aligned_cols=72 Identities=22% Similarity=0.170 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCccceeeeeeecccccH---HHHHHHHHHh-----cCCc--ccHHHHHHHHHHHHH
Q 037575 306 PVLTFHAVAFAVGYWVSKIPSWRQGEEVSRTISLCTGMQSS---TLAGLLATQF-----LGSS--QAVPPACSVIAMAIM 375 (406)
Q Consensus 306 ~~lll~~~~f~lG~~l~r~~~~~~~~~~~~a~~~~~g~rN~---~Lai~lA~~~-----f~~~--~alp~~~y~v~q~i~ 375 (406)
-+.+-..+|..+||++.|+ ++.+++.+.=+.-+++.+|. .+++.-|... |++. .+-=.+.|..+..-.
T Consensus 81 nv~Lt~~ig~liG~lv~~I--~rppp~~~~fiia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~l 158 (408)
T KOG2722|consen 81 NVGLTFIIGSLIGWLVVKI--LRPPPQLRGFIIACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQL 158 (408)
T ss_pred HHHHHHHHHHHHHHHHhhe--ecCChhhcCeEEEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHh
Confidence 3445567899999999999 77777766666666777775 4555545433 2221 233344565555555
Q ss_pred HHHH
Q 037575 376 GLCL 379 (406)
Q Consensus 376 ~~~l 379 (406)
|+++
T Consensus 159 g~il 162 (408)
T KOG2722|consen 159 GQIL 162 (408)
T ss_pred hhhE
Confidence 5553
No 100
>COG3329 Predicted permease [General function prediction only]
Probab=37.74 E-value=1.1e+02 Score=30.50 Aligned_cols=51 Identities=16% Similarity=0.036 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhhccchhhHhhh----hhHHHHHHHHHHHhcccCCHHHHHHHhcC
Q 037575 92 PFVVALTAVAALAQPSTFTWVSK----ELYAPALGGIMLSIGIRLSIEDFALAFKR 143 (406)
Q Consensus 92 ~~~~~~~~~lgl~~P~~~~~l~~----~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~ 143 (406)
...+..+.++|+.--.......+ ++..-.+.+.|+-||++- ++++++..|+
T Consensus 220 l~lllggl~iGlitGe~g~~vl~~F~~~lFqGvL~lflL~MGm~A-~rrl~elrk~ 274 (372)
T COG3329 220 LVLLLGGLAIGLITGEQGESVLKPFFDPLFQGVLCLFLLDMGMTA-GRRLKELRKV 274 (372)
T ss_pred HHHHHHHHHHhheeccCchhhhhhhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHhc
Confidence 44455556668876433333323 334455666777888754 4556655443
No 101
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=36.81 E-value=4.7e+02 Score=26.61 Aligned_cols=100 Identities=15% Similarity=0.179 Sum_probs=54.7
Q ss_pred HHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCchhh------HHHHHHH
Q 037575 123 GIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQ------LSSYASF 196 (406)
Q Consensus 123 ~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~------~s~v~t~ 196 (406)
.+.-..=++++.+-+.+.+.|-- ...+.-.+..=+++.+++.++|.++.-..=.+.+=.+-+|. .|..+++
T Consensus 33 ~LI~GSIL~m~Rk~Lik~~~r~~---p~il~g~~~a~~~g~lvG~l~G~~~~~~~~~i~lPIm~GG~GaGavPLS~~Y~~ 109 (347)
T TIGR00783 33 CLIVGSILGMNRKLLLKALMRFI---PPALIGMVLAVIVGILVGTLFGLGFDHSLMYIVMPIMAGGVGAGIVPLSIIYSA 109 (347)
T ss_pred HHHHhhhhhccHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCCCHhHhhheeeehhcCCCcccchhhHHHHHHH
Confidence 33344445677777776664422 22222333333556667777887765332222222222222 5667888
Q ss_pred HcCCChHHH----HHHHHHHHHHHHHHHHHHHH
Q 037575 197 LSKGDVAVS----ILLSSSTTIASVLITPLLTG 225 (406)
Q Consensus 197 ~~gGd~ala----~~~~~~stlls~~~~Pl~l~ 225 (406)
..|.|.+-. +-.+++.++++++.--++=.
T Consensus 110 ~~g~~~~~~~s~~ip~~~igni~AIi~agll~~ 142 (347)
T TIGR00783 110 ITGRSSEEIFSQLIPAVIIGNIFAIICAGLLSR 142 (347)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887643 34567788888777766533
No 102
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=36.50 E-value=4.3e+02 Score=27.59 Aligned_cols=136 Identities=13% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHH---HhhccchhhH----hhhhhHHHHHHHHHHHhccc-CCHHHHHHHhcCchhHHHHHHHH
Q 037575 83 SSQVLSAMLPFVVALTAVA---ALAQPSTFTW----VSKELYAPALGGIMLSIGIR-LSIEDFALAFKRPLPLSVGFVAQ 154 (406)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~l---gl~~P~~~~~----l~~~~~~~~l~~iMf~~Gl~-l~~~~l~~~~~~p~~~~~~l~~~ 154 (406)
..+++.-+.+.|++..+++ -=..|+..+. +.+....-....+|+.+|+. .+++|+.+.+ .+..+...+.+-
T Consensus 265 l~~~i~ih~~a~mIi~~~i~K~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~-t~~~vv~~~~~V 343 (414)
T PF03390_consen 265 LSKLIGIHAYAWMIILVAIVKAFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAF-TPQYVVIVLATV 343 (414)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHh-CHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHhcCchhhHHHHHHHHcCCChHHHHHHHHHHHHHHHHHH
Q 037575 155 YIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIASVLIT 220 (406)
Q Consensus 155 ~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~v~t~~~gGd~ala~~~~~~stlls~~~~ 220 (406)
.... +.++.+++++++.|..+.-..=++.+--|.+..+-..-+.-..++--..+..|=+-..+++
T Consensus 344 l~~~-~~a~~vG~l~g~YPvEsAItaGLC~an~GGtGDvAVLsAa~RM~LmpFAQIstRiGGAi~l 408 (414)
T PF03390_consen 344 LGAV-IGAFLVGKLVGFYPVESAITAGLCMANMGGTGDVAVLSAANRMELMPFAQISTRIGGAIML 408 (414)
T ss_pred HHHH-HHHHHHHHHhCCChHHHHHHhhhcccCCCCCCcchheehhhhcccccHHHHHHhhhhHHHH
No 103
>PRK09796 PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Probab=35.05 E-value=4.2e+02 Score=28.09 Aligned_cols=33 Identities=9% Similarity=0.115 Sum_probs=23.6
Q ss_pred HHHHHHH-HHHHHHHcCCChHHHHHHHHHhcCch
Q 037575 155 YIIKPIL-GVLIAKAFGIPQIFYAGFVLTACVSG 187 (406)
Q Consensus 155 ~~l~Pll-a~~l~~~~~l~~~~~~GlvL~a~~P~ 187 (406)
|-.+|.+ +|-.++-|+.+|.+...+-..-+.|.
T Consensus 158 FyFLPi~v~~saak~f~~np~lg~~ig~~L~~P~ 191 (472)
T PRK09796 158 FFFLPLMVAASAAIKFKTNMSLAIAIAGVLVHPS 191 (472)
T ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHCcc
Confidence 5567775 77788899999877666555555574
No 104
>PRK03818 putative transporter; Validated
Probab=30.49 E-value=7.2e+02 Score=26.83 Aligned_cols=72 Identities=21% Similarity=0.233 Sum_probs=41.6
Q ss_pred HHHHHHHHhcccCCHHHHHHHhcC-chhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCchhhHHH
Q 037575 120 ALGGIMLSIGIRLSIEDFALAFKR-PLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSS 192 (406)
Q Consensus 120 ~l~~iMf~~Gl~l~~~~l~~~~~~-p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~ 192 (406)
.+.+-++.+|++--++=+....++ .+..+.++++ .++--++++.+.+++++++....|++-=+..-++..+.
T Consensus 66 gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~aGa~T~tp~l~a 138 (552)
T PRK03818 66 GLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLI-VILGGLVTAILHKLFGIPLPVMLGIFSGAVTNTPALGA 138 (552)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHhhccccccHHHHH
Confidence 344445688888887666544443 2334444332 22333446677788999998888877544433333333
No 105
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=30.04 E-value=6.2e+02 Score=25.93 Aligned_cols=106 Identities=16% Similarity=0.088 Sum_probs=62.1
Q ss_pred HHHHHhhccchhhHhhh-hhHHHHHHHHHH-HhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Q 037575 98 TAVAALAQPSTFTWVSK-ELYAPALGGIML-SIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIF 175 (406)
Q Consensus 98 ~~~lgl~~P~~~~~l~~-~~~~~~l~~iMf-~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~ 175 (406)
...+...+|...+.... .-+...+.-++| .+|.+.+.+++.+ .|..++.+. +.+.+-=++.++++++++.|-+.
T Consensus 248 t~~l~~~~~~~~~~l~g~~~lg~~lly~ffa~IGa~a~i~~l~~---ap~~~l~~~-i~l~iH~~l~l~~~kl~k~~l~~ 323 (378)
T PF05684_consen 248 TLGLATSFPPFRKLLRGASELGTFLLYLFFAVIGASADISELLD---APSLFLFGF-IILAIHLLLMLILGKLFKIDLFE 323 (378)
T ss_pred HHHHHHhccchhhcCCchHHHHHHHHHHHHHHHccccCHHHHHH---hHHHHHHHH-HHHHHHHHHHHHHHHHHCCCHHH
Confidence 33345566766554321 112222222333 6699998888865 566555543 34566667788899999987643
Q ss_pred HHHHHHHhcCchhhHHHHHHHHcCCChHHHHHHHH
Q 037575 176 YAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSS 210 (406)
Q Consensus 176 ~~GlvL~a~~P~~~~s~v~t~~~gGd~ala~~~~~ 210 (406)
..+--.++.-+.+.+++++.-.| .++..-.+.
T Consensus 324 -~~vAS~AnIGGpaTA~a~A~a~~--~~Lv~pgvL 355 (378)
T PF05684_consen 324 -LLVASNANIGGPATAPAVAAAKG--PSLVPPGVL 355 (378)
T ss_pred -HHHHhhcccCCcchHHHHHHhcC--CccHHHHHH
Confidence 45555677766666777777666 444433333
No 106
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=29.94 E-value=7e+02 Score=26.55 Aligned_cols=82 Identities=18% Similarity=0.223 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCchhhHHHHHHHH
Q 037575 118 APALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFL 197 (406)
Q Consensus 118 ~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~v~t~~ 197 (406)
..+++.+.|-.|++.+++.++...+. ...+.. +-..+-.-+.+....+++++ ++..|+++-+.+-.+-++.|++.+
T Consensus 65 ~lALaiILfdgG~~T~lss~r~a~~p-alsLAT-lGVl~Ts~Ltg~aA~~ll~l--~wle~~LiGAiVgSTDAAAVF~lL 140 (574)
T COG3263 65 NLALAIILFDGGFGTQLSSFRVAAGP-ALSLAT-LGVLITSGLTGVAAAYLLNL--DWLEGLLIGAIVGSTDAAAVFSLL 140 (574)
T ss_pred HHHHHHHhhcCccCCcHHHHHHHhhh-hHHHHH-HHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHhhccccHHHHHHHH
Confidence 56788888999999999999977643 322222 22222233445555566666 467899888888888888999888
Q ss_pred cCCChH
Q 037575 198 SKGDVA 203 (406)
Q Consensus 198 ~gGd~a 203 (406)
-|-|..
T Consensus 141 ~~~nl~ 146 (574)
T COG3263 141 GGKNLN 146 (574)
T ss_pred ccCChh
Confidence 544443
No 107
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=29.83 E-value=3e+02 Score=27.72 Aligned_cols=130 Identities=11% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHhhhh--hHHHHHHHHHHHHHHHHHHHHHhcccCCC--CCccceeeeeeecccccH-HHHH
Q 037575 276 AMICTSLCIGSPLAINRSQILSIE--GLQLVLPVLTFHAVAFAVGYWVSKIPSWR--QGEEVSRTISLCTGMQSS-TLAG 350 (406)
Q Consensus 276 s~l~lllii~~~~~~n~~~i~~~~--~~~i~~~~lll~~~~f~lG~~l~r~~~~~--~~~~~~~a~~~~~g~rN~-~Lai 350 (406)
+.+.=..+....+-.+-.++.... ...+.+.+..-.++|+.++|.+-+- +++ .+-......++..|.-|. +++-
T Consensus 63 n~llpamI~lmLlqcd~Rki~Klg~rll~ifli~sv~~vlGfIl~yp~~ks-f~gd~Wka~gmi~gSytGGSaNmAAmqa 141 (384)
T COG5505 63 NYLLPAMIPLMLLQCDVRKIFKLGRRLLFIFLISSVGTVLGFILAYPLLKS-FIGDLWKAGGMISGSYTGGSANMAAMQA 141 (384)
T ss_pred HHHHHHHHHHHHHHccHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHhh-hcchHHhhhhheeeeeeCCcchHHHHHh
Q ss_pred HHHH--HhcCCcccHHHHHHHHHHHHHHHHHHHHHhcCccccchhhccccCCcCccCC
Q 037575 351 LLAT--QFLGSSQAVPPACSVIAMAIMGLCLASFWGSGSRIRDLTNILNWHSSSAANT 406 (406)
Q Consensus 351 ~lA~--~~f~~~~alp~~~y~v~q~i~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (406)
.+.. .+|+-..+.=..+|.+|-.+.-.+..--|..|++.+.-.+|...++++.+++
T Consensus 142 aLeVP~~~fsatlaaDtv~ySll~~lli~iVpy~~kw~~~tkpdesKL~A~~~e~a~~ 199 (384)
T COG5505 142 ALEVPGEYFSATLAADTVMYSLLFFLLISIVPYKWKWRHYTKPDESKLKADGNEGASA 199 (384)
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccHHHHhhhhhhhhhh
No 108
>TIGR01948 rnfE electron transport complex, RnfABCDGE type, E subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the E subunit.
Probab=28.08 E-value=5e+02 Score=24.20 Aligned_cols=36 Identities=17% Similarity=0.309 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhhHhHHHhHhcccchHHHHHHHHHH
Q 037575 249 VPVALGLGLNTYAKPVVSFLRPVMPFVAMICTSLCI 284 (406)
Q Consensus 249 lPl~lG~llr~~~p~~~~~i~~~l~~is~l~lllii 284 (406)
+=..+-+.+|++.|+..+.+..+++.+..=|+++-.
T Consensus 75 ~V~~v~~~L~a~~p~L~~~LGiflpLI~~NC~VLgr 110 (196)
T TIGR01948 75 FVTCVDMLMNAYTYDLYKSLGIFIPLIVVNCIILGR 110 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 334567889999999999998888877655555443
No 109
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=27.35 E-value=6.7e+02 Score=25.50 Aligned_cols=80 Identities=11% Similarity=0.119 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCccce---eeeeeecccccHHHHH--HHHHH-hcCCc--ccHHHH-HHHHHHHHHHH
Q 037575 307 VLTFHAVAFAVGYWVSKIPSWRQGEEVS---RTISLCTGMQSSTLAG--LLATQ-FLGSS--QAVPPA-CSVIAMAIMGL 377 (406)
Q Consensus 307 ~lll~~~~f~lG~~l~r~~~~~~~~~~~---~a~~~~~g~rN~~Lai--~lA~~-~f~~~--~alp~~-~y~v~q~i~~~ 377 (406)
+..+...+..+|..+++. ++.++.-- -+++++.|.-+ +.|. ..... .+++. .++..+ +..+...++|.
T Consensus 100 ~~~~~~~Q~~vG~~la~l--~gl~p~~Gll~Gsi~f~GGhGT-Aaa~g~~fe~~~G~~~a~~vg~a~AT~Glv~G~liGg 176 (368)
T PF03616_consen 100 AIILAFLQNIVGLGLAKL--LGLDPLFGLLAGSIGFTGGHGT-AAAFGPTFEELYGWEGATSVGMAAATFGLVVGGLIGG 176 (368)
T ss_pred HHHHHHHHHHHHHHHHHH--hCCCchHHHHhccccccCCccH-HHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344456777777777776 55554321 13566555433 3332 23222 22332 334443 34445678899
Q ss_pred HHHHHHhcCccc
Q 037575 378 CLASFWGSGSRI 389 (406)
Q Consensus 378 ~la~~~~~~~~~ 389 (406)
.++++.-||.+.
T Consensus 177 pi~~~lirk~~~ 188 (368)
T PF03616_consen 177 PIANWLIRKGKL 188 (368)
T ss_pred HHHHHHHHcCCC
Confidence 999888887774
No 110
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=26.89 E-value=5.3e+02 Score=26.26 Aligned_cols=57 Identities=14% Similarity=0.244 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhccc-CCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Q 037575 118 APALGGIMLSIGIR-LSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFY 176 (406)
Q Consensus 118 ~~~l~~iMf~~Gl~-l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~ 176 (406)
......+|..+|+. .+++|+.+.+.-+ .+ ...+...+-+=+.++.++++++..|...
T Consensus 240 ~~lt~~ll~giGla~t~l~~L~~a~t~~-~v-viiv~~Vlg~ii~s~lvGKllG~YPiE~ 297 (347)
T TIGR00783 240 KNLTWPLMVGVGVSYIDLDDLVAALSWQ-FV-VICLSVVVAMILGGAFLGKLMGMYPVES 297 (347)
T ss_pred HHHHHHHHHHcccccCCHHHHHHHhchh-Hh-hhHHHHHHHHHHHHHHHHHHhCCChHHH
Confidence 34555677778887 8999999988633 22 2223334445567888999999887543
No 111
>PF13955 Fst_toxin: Toxin Fst, type I toxin-antitoxin system; PDB: 2KV5_A.
Probab=26.38 E-value=92 Score=18.40 Aligned_cols=16 Identities=19% Similarity=0.667 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHhh
Q 037575 245 QVVLVPVALGLGLNTY 260 (406)
Q Consensus 245 ~~vllPl~lG~llr~~ 260 (406)
..++.|+++|..++-+
T Consensus 2 ~~iIaPi~VGvvl~l~ 17 (21)
T PF13955_consen 2 TTIIAPIVVGVVLTLF 17 (21)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ceehhhHHHHHHHHHH
Confidence 3578899999988754
No 112
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=26.10 E-value=7.6e+02 Score=25.81 Aligned_cols=28 Identities=14% Similarity=0.055 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHhHHHhHh
Q 037575 242 SILQVVLVPVALGLGLNTYAKPVVSFLR 269 (406)
Q Consensus 242 ~ll~~vllPl~lG~llr~~~p~~~~~i~ 269 (406)
+...++.+|.+.|-++|-...-+.+|..
T Consensus 50 q~~ll~aiPil~GallRl~~g~l~drfG 77 (417)
T COG2223 50 QKGLLVAIPILVGALLRLPYGFLTDRFG 77 (417)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhhcccC
Confidence 4467899999999999987766666654
No 113
>PF04346 EutH: Ethanolamine utilisation protein, EutH; InterPro: IPR007441 EutH is a bacterial membrane protein whose molecular function is unknown. It has been suggested that it may act as an ethanolamine transporter, responsible for carrying ethanolamine from the periplasm to the cytoplasm [].; GO: 0006810 transport, 0016021 integral to membrane
Probab=25.48 E-value=7.4e+02 Score=25.31 Aligned_cols=51 Identities=16% Similarity=0.300 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHhCCccccChHHHHHHHHHHHHHHHHHHHHHHhhhHh
Q 037575 212 TTIASVLITPLLTGLLIGSVIPVDAVAMSKSILQVVLVPVALGLGLNTYAKP 263 (406)
Q Consensus 212 stlls~~~~Pl~l~ll~g~~v~vd~~~l~~~ll~~vllPl~lG~llr~~~p~ 263 (406)
..+..++++|+-.. ..|-...+|...+..+++-.+++-++++..+++.-.+
T Consensus 142 Gil~GiitIPiG~~-vggl~~g~~~~~il~Nl~Pvii~~~lla~GL~~~p~~ 192 (354)
T PF04346_consen 142 GILAGIITIPIGCF-VGGLIAGFDIGMILINLIPVIIFAILLAIGLWFFPEK 192 (354)
T ss_pred HHHHHHhhhCHHHH-HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34455555554331 1222345777888889988999999999999887333
No 114
>PF10997 DUF2837: Protein of unknown function (DUF2837); InterPro: IPR021260 This bacterial family of proteins has no known function.
Probab=25.28 E-value=4.4e+02 Score=25.61 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 037575 202 VAVSILLSSSTTIASVLITPLLTGLLIG 229 (406)
Q Consensus 202 ~ala~~~~~~stlls~~~~Pl~l~ll~g 229 (406)
..+.+...++.|+++.+.+|-+..++..
T Consensus 70 ~r~vi~~at~gtl~g~lL~Ptfv~lF~r 97 (254)
T PF10997_consen 70 FRLVILAATVGTLLGILLIPTFVRLFSR 97 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666778999999999999988764
No 115
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=25.24 E-value=7.2e+02 Score=25.10 Aligned_cols=195 Identities=15% Similarity=0.191 Sum_probs=102.7
Q ss_pred cccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHH-cCCChHHHHHHH-HHhcCchhhHHHHHHHHcCCChHHHH
Q 037575 129 GIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKA-FGIPQIFYAGFV-LTACVSGAQLSSYASFLSKGDVAVSI 206 (406)
Q Consensus 129 Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~-~~l~~~~~~Glv-L~a~~P~~~~s~v~t~~~gGd~ala~ 206 (406)
|..++-.++.+.. ...+.++. --++.|+.++.+.+- .++|..-+.++. -.+++...+.....+.+-.-+.++--
T Consensus 42 G~~l~~~~~~~~~---~~~~~~~~-lg~liPl~~~~iLr~~~~l~~~daaAiAAhYGSVSavTF~~a~~~L~~~gi~yeg 117 (327)
T PF05982_consen 42 GVELAHSGLTALL---LPLLAAVL-LGILIPLIAFPILRRLGKLDRADAAAIAAHYGSVSAVTFAAALAFLESQGISYEG 117 (327)
T ss_pred HHHHHcCCHHHHH---HHHHHHHH-HHHHHHHHHHHHHHHccCCChhhHHHHHHHcCchHHHHHHHHHHHHHHCCCCccc
Confidence 5555555555432 22333333 345789999987764 577776666653 45666666655555555444444333
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHhCCc-----------------cccChHHHHHHHH-----HHHHHHHHHHHHHHhhh
Q 037575 207 LLSSSTTIA---SVLITPLLTGLLIGSV-----------------IPVDAVAMSKSIL-----QVVLVPVALGLGLNTYA 261 (406)
Q Consensus 207 ~~~~~stll---s~~~~Pl~l~ll~g~~-----------------v~vd~~~l~~~ll-----~~vllPl~lG~llr~~~ 261 (406)
-|+..-.+. ++++-=++..+..+++ -+.+..++.+..+ ..++-=+++|++.+.
T Consensus 118 ~m~a~~alME~PAIival~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~~~sv~LLlGgliIG~~~g~-- 195 (327)
T PF05982_consen 118 YMVALLALMESPAIIVALLLARLFSRKQAAGATASSTRVGAGSGHEGISWGELLHESLTNKSVVLLLGGLIIGFLAGP-- 195 (327)
T ss_pred cHHHHHHHHhhhHHHHHHHHHHHHhccccccccCCccccccccccccccHHHHHHHHHcCchHHHHHHHHHHhheeCc--
Confidence 333221111 2111111122222211 1345666666654 344445555555442
Q ss_pred HhHHHhHhcccc--hHHHHHHHHHHHHHHHhhh-hHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 037575 262 KPVVSFLRPVMP--FVAMICTSLCIGSPLAINR-SQILSIEGLQLVLPVLTFHAVAFAVGYWVSKIPSWRQGEEV 333 (406)
Q Consensus 262 p~~~~~i~~~l~--~is~l~lllii~~~~~~n~-~~i~~~~~~~i~~~~lll~~~~f~lG~~l~r~~~~~~~~~~ 333 (406)
+-.+.+++... +-..+|+.+.-.+..+..+ ..+.+ .++.++...+++++++-.+|..+++. .+++..+
T Consensus 196 -~g~~~i~pf~~~lF~G~L~lFLLeMGl~A~~rL~~l~~-~g~~li~Fgi~~Pli~a~ig~~lg~~--~gls~Gg 266 (327)
T PF05982_consen 196 -EGVESIKPFFVDLFKGVLCLFLLEMGLVAARRLRDLRK-VGWFLIAFGILMPLINALIGIGLGWL--LGLSPGG 266 (327)
T ss_pred -cchhhccchhhccHHHHHHHHHHHhhHHHHHhhHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCcc
Confidence 22344555532 2245666666555554433 33333 46777888888898888888888887 5665554
No 116
>PRK09292 Na(+)-translocating NADH-quinone reductase subunit D; Validated
Probab=24.79 E-value=5.9e+02 Score=23.97 Aligned_cols=36 Identities=14% Similarity=0.223 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhhHhHHHhHhcccchHHHHHHHHHH
Q 037575 249 VPVALGLGLNTYAKPVVSFLRPVMPFVAMICTSLCI 284 (406)
Q Consensus 249 lPl~lG~llr~~~p~~~~~i~~~l~~is~l~lllii 284 (406)
+=..+-+++|++.|+..+.+..+++.+..=|.++-.
T Consensus 82 ~V~~ve~~l~a~~p~Ly~~LGiflpLIvtNC~VLGr 117 (209)
T PRK09292 82 LVIVVDQVLKAYAYDISKQLSVFVGLIITNCIVMGR 117 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 344577889999999999998888877665555543
No 117
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=23.51 E-value=2.1e+02 Score=21.66 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHhHHHhHh
Q 037575 237 VAMSKSILQVVLVPVALGLGLNTYAKPVVSFLR 269 (406)
Q Consensus 237 ~~l~~~ll~~vllPl~lG~llr~~~p~~~~~i~ 269 (406)
.++.+-+++..++=+.+|.++|++.|++-+.++
T Consensus 4 ~DiiQii~l~AlI~~pLGyl~~~~~~r~~~~lr 36 (62)
T PF11120_consen 4 SDIIQIIILCALIFFPLGYLARRWLPRIRRTLR 36 (62)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHH
Confidence 344444455555666689999999998765544
No 118
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=22.73 E-value=7.2e+02 Score=28.33 Aligned_cols=75 Identities=11% Similarity=0.086 Sum_probs=43.9
Q ss_pred HHHHhcccCCHHHHHH--H-hcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCchhhHHHHHHHHc
Q 037575 124 IMLSIGIRLSIEDFAL--A-FKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLS 198 (406)
Q Consensus 124 iMf~~Gl~l~~~~l~~--~-~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~v~t~~~ 198 (406)
+++.+|+.+.+.++.. . ...++.+++++++.++.-|..++......+....+..-+++--.-|-|+.|.++...+
T Consensus 304 lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigWFGpRGIGSIyyl~~A 381 (810)
T TIGR00844 304 YFVYLGSILPWKDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGHFGPIGVGAVFAAILS 381 (810)
T ss_pred HHHHHHHhhCHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHheeeccccHHHHHHHHHH
Confidence 3356688888777642 1 1224556777777778888777765444433223455556655557777666555444
No 119
>PRK05326 potassium/proton antiporter; Reviewed
Probab=20.71 E-value=8.7e+02 Score=26.01 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=24.0
Q ss_pred HHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 037575 126 LSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIP 172 (406)
Q Consensus 126 f~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~ 172 (406)
+..|+.+++.++.+.. +..+...++..++.-|+..+.....++.+
T Consensus 285 v~lGl~~~~~~l~~~~--~~~l~i~~~l~~vaR~l~v~l~~~~~~~~ 329 (562)
T PRK05326 285 LVLGLLVTPSRLLDIA--LPALLLALFLILVARPLAVFLSLLPFRFN 329 (562)
T ss_pred HHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 4668888888776432 12233333334555566655554444443
No 120
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=20.57 E-value=9.3e+02 Score=24.67 Aligned_cols=71 Identities=17% Similarity=0.191 Sum_probs=37.8
Q ss_pred HHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhcCchhhHHHHHHHHcCC
Q 037575 126 LSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPILGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKG 200 (406)
Q Consensus 126 f~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Plla~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~v~t~~~gG 200 (406)
...|+++|.+.+.+. +...+.....-.+..=...+..++.++.+...+.+.-.... +.+..+.+......+
T Consensus 284 i~vG~~~dl~~l~~~---~~~~l~~~~~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~-~~ge~~~v~~~~~~~ 354 (397)
T COG0475 284 ISVGMSLDLGVLLEN---LLLILLLVALAILGKILGAYLAARLLGFSKRLALGIGLLLR-QGGEFAFVLAGIALG 354 (397)
T ss_pred HHhhHHcCHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhhhh-hhhHHHHHHHHhccc
Confidence 477999998888644 33323222333334444466666777755444433333222 333456666655555
No 121
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=20.24 E-value=3.8e+02 Score=23.83 Aligned_cols=102 Identities=16% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhH------hHHHhHhcccchHHHHHHHHHHHHHHHhhhhHHhhhhh--HHHHHHHHHHHHHHHHHHHHH
Q 037575 250 PVALGLGLNTYAK------PVVSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEG--LQLVLPVLTFHAVAFAVGYWV 321 (406)
Q Consensus 250 Pl~lG~llr~~~p------~~~~~i~~~l~~is~l~lllii~~~~~~n~~~i~~~~~--~~i~~~~lll~~~~f~lG~~l 321 (406)
|++.|+++-++-+ +.-......++.+.....+..+......+.-+-+...+ ....+..++..+......+..
T Consensus 27 ~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~~~~~ 106 (154)
T TIGR01625 27 VLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLVAVAL 106 (154)
T ss_pred HHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hcccCCCCCccceeeeeeecccccHHHHHHHHHH
Q 037575 322 SKIPSWRQGEEVSRTISLCTGMQSSTLAGLLATQ 355 (406)
Q Consensus 322 ~r~~~~~~~~~~~~a~~~~~g~rN~~Lai~lA~~ 355 (406)
.+. ++++..+ +....+|.+..+-++.-+..
T Consensus 107 ~~~--~~~~~~~--~~G~~aGa~T~tpaL~aa~~ 136 (154)
T TIGR01625 107 IKL--LRINYAL--TAGMLAGATTNTPALDAAND 136 (154)
T ss_pred HHH--hCCCHHH--HHHHHhccccChHHHHHHHH
No 122
>COG1970 MscL Large-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=20.02 E-value=4.4e+02 Score=22.92 Aligned_cols=82 Identities=16% Similarity=0.175 Sum_probs=48.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhccchhhHhhhhhHHHHHHHHHHHhcccCCHHHHHHHhcC-----chhHHHHHHHHHHH
Q 037575 83 SSQVLSAMLPFVVALTAVAALAQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKR-----PLPLSVGFVAQYII 157 (406)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~lgl~~P~~~~~l~~~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~-----p~~~~~~l~~~~~l 157 (406)
+.+|+.|-=-+=+++++++|-.+-...+.+.++.+.|.+. +...| .+++++....+. -+...+..++||++
T Consensus 7 FkeF~~RGNVvDLAVgVIIGaAFg~IV~SlV~diImPlIg--~~~gg--~dfs~l~~~l~~~~~~i~yG~Fi~~vinFlI 82 (130)
T COG1970 7 FKEFALRGNVVDLAVGVIIGAAFGKIVTSLVNDIIMPLIG--LLVGG--LDFSNLFITLGIPAVVIAYGAFIQAVINFLI 82 (130)
T ss_pred HHHHHHccChhhHHHHHHhHHHHHHHHHHHHHHHHHhhhh--hhcCC--cChhhheeecCCCceeeeHhHHHHHHHHHHH
Confidence 4555554434445667777877777766665555556444 22333 777777655541 13345566778888
Q ss_pred HHHHHHHHHHH
Q 037575 158 KPILGVLIAKA 168 (406)
Q Consensus 158 ~Plla~~l~~~ 168 (406)
.-...|.+.+.
T Consensus 83 iAf~iFl~Vk~ 93 (130)
T COG1970 83 IAFAIFLVVKA 93 (130)
T ss_pred HHHHHHHHHHH
Confidence 77766665554
Done!