Query 037575
Match_columns 406
No_of_seqs 211 out of 1457
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 23:46:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037575.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037575hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 100.0 1.6E-52 5.5E-57 415.8 31.3 319 81-403 10-330 (332)
2 2kv5_A FST, putative uncharact 33.3 13 0.00043 23.5 0.7 19 242-260 3-21 (33)
3 2ks1_B Epidermal growth factor 24.1 1.3E+02 0.0043 20.2 4.4 14 377-390 29-42 (44)
4 2jwa_A Receptor tyrosine-prote 15.2 1E+02 0.0036 20.7 2.4 17 374-390 26-42 (44)
5 3gia_A Uncharacterized protein 15.0 2.5E+02 0.0084 26.9 6.3 6 194-199 210-215 (444)
6 2l2t_A Receptor tyrosine-prote 14.6 2.3E+02 0.0077 19.0 4.0 11 380-390 31-41 (44)
7 3ukw_C Bimax1 peptide; arm rep 11.5 63 0.0021 18.9 0.4 16 387-402 5-20 (28)
8 3l1l_A Arginine/agmatine antip 8.1 1.2E+03 0.042 21.7 10.7 23 368-390 412-434 (445)
9 3zux_A Transporter, ASBTNM; tr 7.7 1.3E+03 0.043 21.5 14.7 30 152-181 235-264 (332)
10 1vf5_F Protein PET M; photosyn 7.3 5E+02 0.017 16.4 4.2 24 301-324 6-29 (35)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=100.00 E-value=1.6e-52 Score=415.81 Aligned_cols=319 Identities=27% Similarity=0.446 Sum_probs=287.6
Q ss_pred ccHHHHHHhHHHHHHHHHHHHHhhccchhhHhhhhhHHHHHHHHHHHhcccCCHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 037575 81 YDSSQVLSAMLPFVVALTAVAALAQPSTFTWVSKELYAPALGGIMLSIGIRLSIEDFALAFKRPLPLSVGFVAQYIIKPI 160 (406)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~lgl~~P~~~~~l~~~~~~~~l~~iMf~~Gl~l~~~~l~~~~~~p~~~~~~l~~~~~l~Pl 160 (406)
+++.+|++|++++|+++++++|+..|+.+.++ +.++++.++++||.+|++++.+|+++.++||+.+..++++|++++|+
T Consensus 10 ~~~~~~l~~~~~l~i~~~~~lg~~~P~~~~~~-~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pl 88 (332)
T 3zux_A 10 SKISSFIGKTFSLWAALFAAAAFFAPDTFKWA-GPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPA 88 (332)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHCGGGTGGG-GGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcchhhhhh-HHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999887 57788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhcCchhhHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccChHHHH
Q 037575 161 LGVLIAKAFGIPQIFYAGFVLTACVSGAQLSSYASFLSKGDVAVSILLSSSTTIASVLITPLLTGLLIGSVIPVDAVAMS 240 (406)
Q Consensus 161 la~~l~~~~~l~~~~~~GlvL~a~~P~~~~s~v~t~~~gGd~ala~~~~~~stlls~~~~Pl~l~ll~g~~v~vd~~~l~ 240 (406)
+++++++.++++++++.|+++++||||++.|++||+++|||.++++.+++++|+++++++|+++.++.|+.+++|+.+++
T Consensus 89 l~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~g~~~~v~~~~~~ 168 (332)
T 3zux_A 89 TAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGML 168 (332)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhHHHhHhcccchHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037575 241 KSILQVVLVPVALGLGLNTYAKPVVSFLRPVMPFVAMICTSLCIGSPLAINRSQILSIEGLQLVLPVLTFHAVAFAVGYW 320 (406)
Q Consensus 241 ~~ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~is~l~lllii~~~~~~n~~~i~~~~~~~i~~~~lll~~~~f~lG~~ 320 (406)
.+++.++++|+++|+++|++.|++.+++++.++.++..+++++++..++.+.+.+.+. +..++..+++++.++|.+||+
T Consensus 169 ~~l~~~vllP~~lG~l~r~~~~~~~~~~~~~l~~~s~~~illiv~~~~~~~~~~~~~~-~~~v~~~~~l~~~~~~~lg~~ 247 (332)
T 3zux_A 169 MSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMES-GLLIFAVVVLHNGIGYLLGFF 247 (332)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHGGGGHHHHTTHHHHHHHHHHHHHHHHHHHTHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHhhhHHHHhc-cHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998888888877764 556777888999999999999
Q ss_pred HhcccCCCCCccceeeeeeecccccHHHHHHHHHHhc--CCcccHHHHHHHHHHHHHHHHHHHHHhcCccccchhhcccc
Q 037575 321 VSKIPSWRQGEEVSRTISLCTGMQSSTLAGLLATQFL--GSSQAVPPACSVIAMAIMGLCLASFWGSGSRIRDLTNILNW 398 (406)
Q Consensus 321 l~r~~~~~~~~~~~~a~~~~~g~rN~~Lai~lA~~~f--~~~~alp~~~y~v~q~i~~~~la~~~~~~~~~~~~~~~~~~ 398 (406)
++|+ +|++++|++|+++|+|+||+++|+++|..+| +|..++|+++|+++|++.+++++.+|+||+++++.+.+-++
T Consensus 248 ~~r~--~~~~~~~~~ti~~e~G~qNs~lai~lA~~~F~~~p~~alp~~iy~~~q~i~~~~la~~~~~~~~~~~~~~~~~~ 325 (332)
T 3zux_A 248 AAKW--TGLPYDAQKALTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWAAKAGKHKKPLDRAG 325 (332)
T ss_dssp HHHH--TTCCHHHHHHHHHHHHCCCHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHH--hCCCHhHhhhhhhhhhhccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCccccCCchhhcc
Confidence 9999 8999999999999999999999999999999 56789999999999999999999999999988888777777
Q ss_pred CCcCc
Q 037575 399 HSSSA 403 (406)
Q Consensus 399 ~~~~~ 403 (406)
+|+-+
T Consensus 326 ~~~~~ 330 (332)
T 3zux_A 326 SENLY 330 (332)
T ss_dssp -----
T ss_pred ccccc
Confidence 77643
No 2
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=33.26 E-value=13 Score=23.54 Aligned_cols=19 Identities=26% Similarity=0.623 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 037575 242 SILQVVLVPVALGLGLNTY 260 (406)
Q Consensus 242 ~ll~~vllPl~lG~llr~~ 260 (406)
.++..++.|+++|+.++-+
T Consensus 3 ~i~~~IIaPivVGvvl~L~ 21 (33)
T 2kv5_A 3 DLMSLVIAPIFVGLVLEMI 21 (33)
T ss_dssp TTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3467889999999999865
No 3
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=24.13 E-value=1.3e+02 Score=20.21 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=7.5
Q ss_pred HHHHHHHhcCcccc
Q 037575 377 LCLASFWGSGSRIR 390 (406)
Q Consensus 377 ~~la~~~~~~~~~~ 390 (406)
..+.-+|+||+++|
T Consensus 29 ~~~~~~~RRr~~~~ 42 (44)
T 2ks1_B 29 LGIGLFMRRRHIVR 42 (44)
T ss_dssp HHHHHHHHTTTCCS
T ss_pred HHHHHHhhhhHhhc
Confidence 33344666666554
No 4
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=15.16 E-value=1e+02 Score=20.66 Aligned_cols=17 Identities=6% Similarity=0.200 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhcCcccc
Q 037575 374 IMGLCLASFWGSGSRIR 390 (406)
Q Consensus 374 i~~~~la~~~~~~~~~~ 390 (406)
+.+..+.-+++||+++|
T Consensus 26 i~~l~~~~~~RRR~~~~ 42 (44)
T 2jwa_A 26 VLGVVFGILIKRRQQKI 42 (44)
T ss_dssp HHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHhheehhhhhc
Confidence 33444444555555443
No 5
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=15.01 E-value=2.5e+02 Score=26.91 Aligned_cols=6 Identities=33% Similarity=-0.097 Sum_probs=2.3
Q ss_pred HHHHcC
Q 037575 194 ASFLSK 199 (406)
Q Consensus 194 ~t~~~g 199 (406)
.++..+
T Consensus 210 ~~~e~k 215 (444)
T 3gia_A 210 ASEHIE 215 (444)
T ss_dssp TGGGBS
T ss_pred HHHHcc
Confidence 333343
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=14.63 E-value=2.3e+02 Score=18.97 Aligned_cols=11 Identities=18% Similarity=0.063 Sum_probs=6.2
Q ss_pred HHHHhcCcccc
Q 037575 380 ASFWGSGSRIR 390 (406)
Q Consensus 380 a~~~~~~~~~~ 390 (406)
.-+|+||+++|
T Consensus 31 ~~~~RRRr~~~ 41 (44)
T 2l2t_A 31 AVYVRRKSIKK 41 (44)
T ss_dssp HHHHHTTCSSC
T ss_pred HHHhhhhhhhh
Confidence 34666665554
No 7
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=11.46 E-value=63 Score=18.92 Aligned_cols=16 Identities=13% Similarity=-0.045 Sum_probs=8.7
Q ss_pred ccccchhhccccCCcC
Q 037575 387 SRIRDLTNILNWHSSS 402 (406)
Q Consensus 387 ~~~~~~~~~~~~~~~~ 402 (406)
+|-|+-|-+.+|+||.
T Consensus 5 rrprkrplewdedeep 20 (28)
T 3ukw_C 5 RRPRKRPLEWDEDEEP 20 (28)
T ss_dssp --CCCCCCCCCGGGSC
T ss_pred cccccCCcccccccCc
Confidence 3334445578887764
No 8
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=8.05 E-value=1.2e+03 Score=21.67 Aligned_cols=23 Identities=0% Similarity=-0.193 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHhcCcccc
Q 037575 368 SVIAMAIMGLCLASFWGSGSRIR 390 (406)
Q Consensus 368 y~v~q~i~~~~la~~~~~~~~~~ 390 (406)
+...-...+..+..+++||++++
T Consensus 412 ~~~~~~~~g~~~y~~~~~~~~~~ 434 (445)
T 3l1l_A 412 WSFVTLMVITAMYALNYNRLHKN 434 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCC
T ss_pred HHHHHHHHHHHHHHHHhhhcccC
Confidence 33444455555544455444443
No 9
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=7.65 E-value=1.3e+03 Score=21.48 Aligned_cols=30 Identities=27% Similarity=0.270 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 037575 152 VAQYIIKPILGVLIAKAFGIPQIFYAGFVL 181 (406)
Q Consensus 152 ~~~~~l~Plla~~l~~~~~l~~~~~~GlvL 181 (406)
+....+.-.+++.+++.++.+.+....+.+
T Consensus 235 ~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~ 264 (332)
T 3zux_A 235 VLHNGIGYLLGFFAAKWTGLPYDAQKALTI 264 (332)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHhHhhhhhh
Confidence 334444555566666666666655544444
No 10
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=7.26 E-value=5e+02 Score=16.44 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 037575 301 LQLVLPVLTFHAVAFAVGYWVSKI 324 (406)
Q Consensus 301 ~~i~~~~lll~~~~f~lG~~l~r~ 324 (406)
+.+...+..+.++|..+|+.+-|.
T Consensus 6 f~~A~i~~~LvLvGla~Gf~LLki 29 (35)
T 1vf5_F 6 LYAALLSFGLIFVGWGLGVLLLKI 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhee
Confidence 345566677778899999999887
Done!