BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037577
(161 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 55 FKIFMQKYEKSYATREEYVHRLGIFAKNMIRAAEHQLLDPTAVHGVTPFSDLSEEEFESM 114
F+ +M K+ K Y +E ++R IF N+ E + + G+ F+D+S +EF+
Sbjct: 66 FESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKNNSYWLGLNVFADMSNDEFKEK 125
Query: 115 YTGMKGGPPVMDSGG----LESGSVKMMEIDGFPENFDWREKGAVTEVKMQ 161
YTG G L G V + PE DWR+KGAVT VK Q
Sbjct: 126 YTGSIAGNYTTTELSYEEVLNDGDVNI------PEYVDWRQKGAVTPVKNQ 170
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 55 FKIFMQKYEKSYATREEYVHRLGIFAKNMIRAAEHQLLDPTAVHGVTPFSDLSEEEFESM 114
F +M + K Y +E ++R IF N+ E + + G+ F+DLS +EF
Sbjct: 22 FNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSYWLGLNEFADLSNDEFNEK 81
Query: 115 YTGMKGGPPVMDSGGLESGSVKMM--EIDGFPENFDWREKGAVTEVKMQ 161
Y G ++D+ +S + + +I PEN DWR+KGAVT V+ Q
Sbjct: 82 YVG-----SLIDATIEQSYDEEFINEDIVNLPENVDWRKKGAVTPVRHQ 125
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 58 FMQKYEKSYATREEYVHRLGIFAKNMIRAAEHQLLDP----TAVHGVTPFSDLSEEEFES 113
+ + Y K Y ++ HR I+ KN+ EH L T G+ F+D++ EEF++
Sbjct: 8 WKRMYNKEYNGADD-QHRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEFKA 66
Query: 114 MY-TGMKGGPPVMDSGGLESGSVKMMEIDGFPENFDWREKGAVTEVKMQ 161
Y T M ++ G + + + P+ DWRE G VTEVK Q
Sbjct: 67 KYLTEMSRASDILSHGVPYEANNRAV-----PDKIDWRESGYVTEVKDQ 110
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 52 ENNFKIFMQKYEKSYATREEYVHRLGIFAKNMIRAAEHQLLDPTAVH----GVTPFSDLS 107
++++ ++ + Y K Y + E R I+ KN+ H L +H G+ D++
Sbjct: 9 DHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMT 68
Query: 108 EEEFESMYTGMKGGPPVMDSGGLESGSVKMMEIDGFPENFDWREKGAVTEVKMQ 161
EE S+ + ++ + +S +++ P++ DWREKG VTEVK Q
Sbjct: 69 SEEVMSLMSSLRVPSQWQRNITYKSNPNRIL-----PDSVDWREKGCVTEVKYQ 117
>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 106
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 31/68 (45%)
Query: 52 ENNFKIFMQKYEKSYATREEYVHRLGIFAKNMIRAAEHQLLDPTAVHGVTPFSDLSEEEF 111
++ F F Y KSYAT EE R IF N++ H + + F DLS +EF
Sbjct: 22 QDAFSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQGYSYSLKMNHFGDLSRDEF 81
Query: 112 ESMYTGMK 119
Y G K
Sbjct: 82 RRKYLGFK 89
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 22/121 (18%)
Query: 55 FKIFMQKYEKSYATREEYVHRLGIFAKNMIRAAEHQ------LLDPTAVHGVTPFSDLSE 108
++ F Y +SY +E R IF K + EH L+ T GV F+D++
Sbjct: 22 WENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTL--GVNLFTDMTP 79
Query: 109 EEFESMYTGM-------KGGPPVMDSGGLE-SGSVKMMEIDGFPENFDWREKGAVTEVKM 160
EE ++ G+ K G P+ L + SV+ +P +FDWR++G V+ VK
Sbjct: 80 EEMKAYTHGLIMPADLHKNGIPIKTREDLGLNASVR------YPASFDWRDQGMVSPVKN 133
Query: 161 Q 161
Q
Sbjct: 134 Q 134
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Query: 52 ENNFKIFMQKYEKSYATREEYVHRLGIFAKNMIRAAEHQLLDPTAVH----GVTPFSDLS 107
+ +++++ + + K Y + + + R I+ KN+ + H L VH + D++
Sbjct: 8 DTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMT 67
Query: 108 EEEFESMYTGMKGGPPVMDSGGLESGSVKMMEIDG-FPENFDWREKGAVTEVKMQ 161
EE TG+K V S + ++ + E +G P++ D+R+KG VT VK Q
Sbjct: 68 SEEVVQKMTGLK----VPLSHSRSNDTLYIPEWEGRAPDSVDYRKKGYVTPVKNQ 118
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 143 FPENFDWREKGAVTEVKMQ 161
+PE+ DWREKGAVT VK Q
Sbjct: 1 YPESIDWREKGAVTPVKNQ 19
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 143 FPENFDWREKGAVTEVKMQ 161
P++ DWREKG VTEVK Q
Sbjct: 1 LPDSVDWREKGCVTEVKYQ 19
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 143 FPENFDWREKGAVTEVKMQ 161
P++ DWREKG VTEVK Q
Sbjct: 2 LPDSVDWREKGCVTEVKYQ 20
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 143 FPENFDWREKGAVTEVKMQ 161
P++ DWREKG VTEVK Q
Sbjct: 1 LPDSVDWREKGCVTEVKYQ 19
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 143 FPENFDWREKGAVTEVKMQ 161
P++ DWREKG VTEVK Q
Sbjct: 3 LPDSVDWREKGCVTEVKYQ 21
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 143 FPENFDWREKGAVTEVKMQ 161
P++ DWREKG VTEVK Q
Sbjct: 1 LPDSVDWREKGCVTEVKYQ 19
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 143 FPENFDWREKGAVTEVKMQ 161
P++ DWREKG VTEVK Q
Sbjct: 1 LPDSVDWREKGCVTEVKYQ 19
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 143 FPENFDWREKGAVTEVKMQ 161
P++ DWREKG VTEVK Q
Sbjct: 4 LPDSVDWREKGCVTEVKYQ 22
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 143 FPENFDWREKGAVTEVKMQ 161
P++ DWREKG VTEVK Q
Sbjct: 1 LPDSVDWREKGCVTEVKYQ 19
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 143 FPENFDWREKGAVTEVKMQ 161
P++ DWREKG VTEVK Q
Sbjct: 1 LPDSVDWREKGCVTEVKYQ 19
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 143 FPENFDWREKGAVTEVKMQ 161
P++ DWREKG VTEVK Q
Sbjct: 2 LPDSVDWREKGCVTEVKYQ 20
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 143 FPENFDWREKGAVTEVKMQ 161
P++ DWREKG VTEVK Q
Sbjct: 2 LPDSVDWREKGCVTEVKYQ 20
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 143 FPENFDWREKGAVTEVKMQ 161
P++ DWREKG VTEVK Q
Sbjct: 1 LPDSVDWREKGCVTEVKYQ 19
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 143 FPENFDWREKGAVTEVKMQ 161
PEN DWR+KGAVT V+ Q
Sbjct: 1 LPENVDWRKKGAVTPVRHQ 19
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 143 FPENFDWREKGAVTEVKMQ 161
PEN DWR+KGAVT V+ Q
Sbjct: 1 LPENVDWRKKGAVTPVRHQ 19
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 33.5 bits (75), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 16/94 (17%)
Query: 75 RLGIFAKNMIRAAEHQLLDPTAVHGVT----PFSDLSEEEFESMYTGMKGGPPVMDSGGL 130
R ++ KNM H H T F D++ EEF + G++ P
Sbjct: 27 RRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGLQNRKPRKG---- 82
Query: 131 ESGSVKMMEIDGF---PENFDWREKGAVTEVKMQ 161
K+ + F P + DWREKG VT VK Q
Sbjct: 83 -----KVFQEPLFYEAPRSVDWREKGYVTPVKNQ 111
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 33.1 bits (74), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 47/124 (37%), Gaps = 17/124 (13%)
Query: 45 LLLGSATENNFKIFMQKYEKSYATREEYVHRLGIFAKNMIRAAEHQLLDPTAVHGVT--- 101
L + E + + + + Y EE R ++ KNM H H T
Sbjct: 2 LTFDHSLEAQWTKWKAMHNRLYGMNEEGWRR-AVWEKNMKMIELHNQEYREGKHSFTMAM 60
Query: 102 -PFSDLSEEEFESMYTGMKGGPPVMDSGGLESGSVKMMEIDGF---PENFDWREKGAVTE 157
F D++ EEF + G + P K+ + F P + DWREKG VT
Sbjct: 61 NAFGDMTSEEFRQVMNGFQNRKPRKG---------KVFQEPLFYEAPRSVDWREKGYVTP 111
Query: 158 VKMQ 161
VK Q
Sbjct: 112 VKNQ 115
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 32.7 bits (73), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 14/111 (12%)
Query: 58 FMQKYEKSYATREEYVHRLGIFAKNMIRAAEHQLL----DPTAVHGVTPFSDLSEEEFES 113
F ++KSY++ E + R IF N+ + AEH + T + F D+S+EEF +
Sbjct: 30 FKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSKEEFLA 89
Query: 114 MYTGMKGGPPVMDSGGLESGSVKMMEIDG---FPENFDWREKGAVTEVKMQ 161
K P +++M + + DWR AV+EVK Q
Sbjct: 90 YVNRGKAQKPKHPE------NLRMPYVSSKKPLAASVDWRSN-AVSEVKDQ 133
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 143 FPENFDWREKGAVTEVKMQ 161
PE DWR+KGAVT VK Q
Sbjct: 1 LPEQIDWRKKGAVTPVKNQ 19
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 143 FPENFDWREKGAVTEVKMQ 161
PE DWR+KGAVT VK Q
Sbjct: 1 LPEQIDWRKKGAVTPVKNQ 19
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 143 FPENFDWREKGAVTEVKMQ 161
+P++ DWR KGAVT VK Q
Sbjct: 1 YPQSIDWRAKGAVTPVKNQ 19
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 143 FPENFDWREKGAVTEVKMQ 161
PE+ DWR KGAVT VK Q
Sbjct: 1 LPESVDWRAKGAVTPVKHQ 19
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 143 FPENFDWREKGAVTEVKMQ 161
PE DWR+KGAVT VK Q
Sbjct: 1 IPEYVDWRQKGAVTPVKNQ 19
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 143 FPENFDWREKGAVTEVKMQ 161
PE DWR+KGAVT VK Q
Sbjct: 1 IPEYVDWRQKGAVTPVKNQ 19
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 143 FPENFDWREKGAVTEVKMQ 161
PE DWR+KGAVT VK Q
Sbjct: 1 IPEYVDWRQKGAVTPVKNQ 19
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 143 FPENFDWREKGAVTEVKMQ 161
PE DWR+KGAVT VK Q
Sbjct: 1 IPEYVDWRQKGAVTPVKNQ 19
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 143 FPENFDWREKGAVTEVKMQ 161
PE DWR+KGAVT VK Q
Sbjct: 1 IPEYVDWRQKGAVTPVKNQ 19
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 144 PENFDWREKGAVTEVKMQ 161
PE DWR+KGAVT VK Q
Sbjct: 2 PEYVDWRQKGAVTPVKNQ 19
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 144 PENFDWREKGAVTEVKMQ 161
P + DWR+KGAVT VK Q
Sbjct: 2 PASIDWRKKGAVTSVKDQ 19
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 141 DGFPENFDWREKGAVTEVKMQ 161
D P++ DWRE GAV VK Q
Sbjct: 1 DDLPDSIDWRENGAVVPVKNQ 21
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 12/65 (18%)
Query: 100 VTPFSDLSEEEFESMYTGMKGGPPVMDSGGLESGSVKMMEIDGF---PENFDWREKGAVT 156
+ F D++ EEF + G + P K+ + F P + DWREKG VT
Sbjct: 2 MNAFGDMTSEEFRQVMNGFQNRKPRKG---------KVFQEPLFYEAPRSVDWREKGYVT 52
Query: 157 EVKMQ 161
VK Q
Sbjct: 53 PVKNQ 57
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 30.0 bits (66), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 140 IDGFPENFDWREKGAVTEVKMQ 161
+ P + DWR+KGAVT VK Q
Sbjct: 1 VSDLPPSVDWRQKGAVTGVKDQ 22
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 30.0 bits (66), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 13/18 (72%)
Query: 144 PENFDWREKGAVTEVKMQ 161
P DWREKGAVT VK Q
Sbjct: 2 PAAVDWREKGAVTPVKDQ 19
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 30.0 bits (66), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 144 PENFDWREKGAVTEVKMQ 161
PE++DW +KG +T+VK Q
Sbjct: 3 PESWDWSKKGVITKVKFQ 20
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 30.0 bits (66), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 144 PENFDWREKGAVTEVKMQ 161
P +DWR KGAVT+VK Q
Sbjct: 2 PPEWDWRSKGAVTKVKDQ 19
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 30.0 bits (66), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 144 PENFDWREKGAVTEVKMQ 161
P + DWR+KGAVT VK Q
Sbjct: 3 PASVDWRKKGAVTSVKDQ 20
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 30.0 bits (66), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 143 FPENFDWREKGAVTEVKMQ 161
P + DWR+KGAVT V+ Q
Sbjct: 1 IPTSIDWRQKGAVTPVRNQ 19
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 144 PENFDWREKGAVTEVKMQ 161
P + DWREKG VT VK Q
Sbjct: 2 PRSVDWREKGYVTPVKNQ 19
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 144 PENFDWREKGAVTEVKMQ 161
P + DWREKG VT VK Q
Sbjct: 2 PRSVDWREKGYVTPVKNQ 19
>pdb|1UUM|A Chain A, Rat Dihydroorotate Dehydrogenase (Dhod)in Complex With
Atovaquone
pdb|1UUM|B Chain B, Rat Dihydroorotate Dehydrogenase (Dhod)in Complex With
Atovaquone
pdb|1UUO|A Chain A, Rat Dihydroorotate Dehydrogenase (Dhod)in Complex With
Brequinar
Length = 372
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 102 PFSDLSEEEFESMYTGMKGGPPVMDSGGLESGSVKMMEI 140
P DLS + MY +G P++ GG+ SG + +I
Sbjct: 284 PLRDLSTQTIREMYALTQGRIPIIGVGGVSSGQDALEKI 322
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 144 PENFDWREKGAVTEVKMQ 161
P + DWREKG VT VK Q
Sbjct: 2 PRSVDWREKGYVTPVKNQ 19
>pdb|3U2O|A Chain A, Dihydroorotate Dehydrogenase (Dhodh) Crystal Structure In
Complex With Small Molecule Inhibitor
Length = 395
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 102 PFSDLSEEEFESMYTGMKGGPPVMDSGGLESGSVKMMEI 140
P DLS + MY +G P++ GG+ SG + +I
Sbjct: 307 PLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKI 345
>pdb|3KVJ|A Chain A, Crystal Structure Of Human Dihydroorotate Dehydrogenase
(Dhodh) With Amino-Benzoic Acid Inhibitor 105 At 1.94a
Resolution
pdb|3KVK|A Chain A, Crystal Structure Of Human Dihydroorotate Dehydrogenase
(Dhodh) With Amino-Benzoic Acid Inhibitor 641 At 2.05a
Resolution
pdb|3KVL|A Chain A, Crystal Structure Of Human Dihydroorotate Dehydrogenase
(Dhodh) With Amino-Benzoic Acid Inhibitor 715 At 1.85a
Resolution
pdb|3KVM|A Chain A, Crystal Structure Of Human Dihydroorotate Dehydrogenase
(Dhodh) With Amino-Benzoic Acid Inhibitor 951 At 2.00a
Resolution
Length = 390
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 102 PFSDLSEEEFESMYTGMKGGPPVMDSGGLESGSVKMMEI 140
P DLS + MY +G P++ GG+ SG + +I
Sbjct: 302 PLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKI 340
>pdb|1D3G|A Chain A, Human Dihydroorotate Dehydrogenase Complexed With
Brequinar Analog
pdb|1D3H|A Chain A, Human Dihydroorotate Dehydrogenase Complexed With
Antiproliferative Agent A771726
pdb|2BXV|A Chain A, Dual Binding Mode Of A Novel Series Of Dhodh Inhibitors
pdb|2PRH|A Chain A, The Structures Of Apo- And Inhibitor Bound Human
Dihydroorotate Dehydrogenase Reveal Conformational
Flexibility Within The Inhibitor Binding Site
pdb|2PRL|A Chain A, The Structures Of Apo- And Inhibitor Bound Human
Dihydroorotate Dehydrogenase Reveal Conformational
Flexibility Within The Inhibitor Binding Site
pdb|2PRM|A Chain A, The Structures Of Apo- And Inhibitor Bound Human
Dihydroorotate Dehydrogenase Reveal Conformational
Flexibility Within The Inhibitor Binding Site
pdb|3F1Q|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 1
pdb|3FJ6|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 2
pdb|3FJL|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 3
pdb|3G0U|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 4
pdb|3G0X|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 5
pdb|3ZWS|A Chain A, Structure Of Human Dihydroorotate Dehydrogenase With A
Bound Inhibitor
pdb|3ZWT|A Chain A, Structure Of Human Dihydroorotate Dehydrogenase With A
Bound Inhibitor
Length = 367
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 102 PFSDLSEEEFESMYTGMKGGPPVMDSGGLESGSVKMMEI 140
P DLS + MY +G P++ GG+ SG + +I
Sbjct: 279 PLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKI 317
>pdb|2WV8|A Chain A, Complex Of Human Dihydroorotate Dehydrogenase With The
Inhibitor 221290
Length = 365
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 102 PFSDLSEEEFESMYTGMKGGPPVMDSGGLESGSVKMMEI 140
P DLS + MY +G P++ GG+ SG + +I
Sbjct: 277 PLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKI 315
>pdb|2B0M|A Chain A, Human Dihydroorotate Dehydrogenase Bound To A Novel
Inhibitor
Length = 393
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 102 PFSDLSEEEFESMYTGMKGGPPVMDSGGLESGSVKMMEI 140
P DLS + MY +G P++ GG+ SG + +I
Sbjct: 305 PLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKI 343
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 144 PENFDWREKGAVTEVKMQ 161
P + DWREKG VT VK Q
Sbjct: 2 PRSVDWREKGYVTPVKNQ 19
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 144 PENFDWREKGAVTEVKMQ 161
P + DWREKG VT VK Q
Sbjct: 2 PRSVDWREKGYVTPVKNQ 19
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 144 PENFDWREKGAVTEVKMQ 161
P + DWREKG VT VK Q
Sbjct: 2 PRSVDWREKGYVTPVKNQ 19
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 144 PENFDWREKGAVTEVKMQ 161
P + DWREKG VT VK Q
Sbjct: 2 PRSVDWREKGYVTPVKNQ 19
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 144 PENFDWREKGAVTEVKMQ 161
P + DWREKG VT VK Q
Sbjct: 3 PRSVDWREKGYVTPVKNQ 20
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 144 PENFDWREKGAVTEVKMQ 161
P + DWREKG VT VK Q
Sbjct: 2 PRSVDWREKGYVTPVKNQ 19
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 144 PENFDWREKGAVTEVKMQ 161
P + DWREKG VT VK Q
Sbjct: 3 PRSVDWREKGYVTPVKNQ 20
>pdb|2FPT|A Chain A, Dual Binding Mode Of A Novel Series Of Dhodh Inhibitors
pdb|2FPV|A Chain A, Dual Binding Mode Of A Novel Series Of Dhodh Inhibitors
pdb|2FPY|A Chain A, Dual Binding Mode Of A Novel Series Of Dhodh Inhibitors
pdb|2FQI|A Chain A, Dual Binding Modes Of A Novel Series Of Dhodh Inhibitors
Length = 395
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 102 PFSDLSEEEFESMYTGMKGGPPVMDSGGLESGSVKMMEI 140
P DLS + MY +G P++ GG+ SG + +I
Sbjct: 307 PLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKI 345
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 143 FPENFDWREKGAVTEVKMQ 161
PE+ DWR KGAV +K Q
Sbjct: 1 LPEHVDWRAKGAVIPLKNQ 19
>pdb|4GKF|A Chain A, Crystal Structure And Characterization Of Cmr5 Protein
From Pyrococcus Furiosus
pdb|4GKF|B Chain B, Crystal Structure And Characterization Of Cmr5 Protein
From Pyrococcus Furiosus
Length = 169
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 73 VHRLGIFAKNMIRAAEHQLLDPTAVHGVTPFSDLSEEEFESMYTGMKGGPPVM--DSGGL 130
VH L K IR Q A + + +DL++++ E Y + PVM +G L
Sbjct: 3 VHMLSKDNKKSIRKTLEQRRGEYAYYVIKEVADLNDKQLEEKYASLVKKAPVMILSNGLL 62
Query: 131 ESGSVKMMEIDGFPE 145
++ + + + + PE
Sbjct: 63 QTLAFLLAKAETSPE 77
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 143 FPENFDWREKGAVTEVKMQ 161
P++ DWR+KG VT VK Q
Sbjct: 1 LPKSVDWRKKGYVTPVKNQ 19
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 143 FPENFDWREKGAVTEVKMQ 161
P++ DWR+KG VT VK Q
Sbjct: 1 LPKSVDWRKKGYVTPVKNQ 19
>pdb|4FTD|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03550)
From Bacteroides Eggerthii Dsm 20697 At 1.91 A
Resolution
Length = 453
Score = 26.2 bits (56), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 13/77 (16%)
Query: 79 FAKNMIRAA----EHQLL--DPTAVHGVTP----FSDLSEEEFESM---YTGMKGGPPVM 125
FA N R A EH L+ PT + TP SDL E + + TG+KGG
Sbjct: 133 FATNYTRCASYDGEHVLVVSRPTTPNFHTPHLLKVSDLKRGEIKPIXLDVTGVKGGTYDY 192
Query: 126 DSGGLESGSVKMMEIDG 142
+ G L +G V + + G
Sbjct: 193 NXGALINGHVYLSSLSG 209
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 144 PENFDWREKGAVTEVKMQ 161
P++ D+REKG VT VK Q
Sbjct: 2 PDSVDYREKGYVTPVKNQ 19
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,494,094
Number of Sequences: 62578
Number of extensions: 173586
Number of successful extensions: 362
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 288
Number of HSP's gapped (non-prelim): 67
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)