Query 037577
Match_columns 161
No_of_seqs 146 out of 1133
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 13:43:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037577.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037577hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542 Cysteine proteinase Ca 100.0 4.3E-29 9.2E-34 204.3 11.0 146 9-161 27-175 (372)
2 PTZ00203 cathepsin L protease; 99.9 2.9E-27 6.2E-32 197.7 14.6 109 50-161 33-144 (348)
3 PTZ00200 cysteine proteinase; 99.9 8.7E-24 1.9E-28 181.5 12.6 114 47-161 118-252 (448)
4 PTZ00021 falcipain-2; Provisio 99.9 4.7E-23 1E-27 178.1 11.8 111 51-161 165-284 (489)
5 PF08246 Inhibitor_I29: Cathep 99.8 2E-19 4.3E-24 113.8 7.4 57 55-111 1-58 (58)
6 smart00848 Inhibitor_I29 Cathe 99.7 8.3E-17 1.8E-21 100.9 4.7 56 55-110 1-57 (57)
7 KOG1543 Cysteine proteinase Ca 99.6 5.2E-15 1.1E-19 123.0 10.3 97 59-161 30-128 (325)
8 PTZ00364 dipeptidyl-peptidase 96.5 0.0013 2.8E-08 58.5 2.0 21 141-161 203-226 (548)
9 PF08127 Propeptide_C1: Peptid 96.2 0.0042 9.2E-08 36.3 2.3 35 84-120 4-38 (41)
10 PTZ00049 cathepsin C-like prot 94.9 0.014 3E-07 53.2 1.9 22 140-161 378-403 (693)
11 COG4870 Cysteine protease [Pos 92.0 0.064 1.4E-06 45.4 0.9 20 142-161 98-117 (372)
12 PF07172 GRP: Glycine rich pro 76.5 2.1 4.4E-05 29.6 2.0 13 1-14 1-13 (95)
13 KOG1544 Predicted cysteine pro 67.3 2.4 5.2E-05 35.8 0.7 75 83-161 150-229 (470)
14 PF01456 Mucin: Mucin-like gly 56.5 7.9 0.00017 28.0 1.8 13 8-20 5-17 (143)
15 PF03823 Neurokinin_B: Neuroki 49.5 19 0.00041 22.4 2.3 18 5-22 2-19 (59)
16 PF05887 Trypan_PARP: Procycli 49.1 5.6 0.00012 29.2 0.0 18 4-21 3-20 (143)
17 PRK14756 hypothetical protein; 47.0 38 0.00082 18.0 2.9 23 1-23 1-23 (29)
18 TIGR02781 VirB9 P-type conjuga 39.8 32 0.0007 27.5 3.0 29 9-37 3-32 (243)
19 PF15240 Pro-rich: Proline-ric 37.1 29 0.00062 26.7 2.2 6 23-28 12-17 (179)
20 PF15284 PAGK: Phage-encoded v 34.9 31 0.00068 21.8 1.7 7 23-29 21-27 (61)
21 PRK02710 plastocyanin; Provisi 31.5 37 0.0008 23.9 1.9 14 1-14 1-14 (119)
22 PF15330 SIT: SHP2-interacting 28.1 56 0.0012 22.9 2.3 13 9-21 6-18 (107)
23 PF00918 Gastrin: Gastrin/chol 27.0 23 0.0005 25.2 0.2 18 8-25 4-21 (116)
24 PF05391 Lsm_interact: Lsm int 26.1 59 0.0013 16.1 1.5 12 105-116 9-20 (21)
25 KOG4702 Uncharacterized conser 23.3 2.1E+02 0.0046 18.7 4.1 34 51-85 27-60 (77)
26 PRK10533 putative lipoprotein; 23.2 1.1E+02 0.0023 23.4 3.1 43 7-62 8-55 (171)
27 PF10731 Anophelin: Thrombin i 22.9 1.3E+02 0.0029 19.0 3.0 17 20-36 18-34 (65)
28 PF10311 Ilm1: Increased loss 22.3 95 0.0021 23.5 2.8 20 1-20 49-68 (165)
29 PF05984 Cytomega_UL20A: Cytom 22.0 1E+02 0.0022 20.9 2.5 16 12-27 7-22 (100)
30 PF13623 SurA_N_2: SurA N-term 22.0 3.3E+02 0.0071 20.0 8.4 53 56-115 63-115 (145)
31 PF01320 Colicin_Pyocin: Colic 21.5 49 0.0011 22.3 1.0 17 101-117 5-21 (85)
32 COG3678 CpxP P pilus assembly/ 21.0 92 0.002 23.5 2.5 9 7-15 8-16 (160)
33 PF15145 DUF4577: Domain of un 20.3 1.1E+02 0.0025 21.8 2.6 19 4-22 59-77 (128)
No 1
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.3e-29 Score=204.28 Aligned_cols=146 Identities=44% Similarity=0.633 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCccccccCC--ccccccCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Q 037577 9 LTCAIGVTLLTYALTLSSALVPQNPTIRQVTDN--PSHLLLGSATENNFKIFMQKYEKSYATREEYVHRLGIFAKNMIRA 86 (161)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~f~~fk~k~~K~Y~s~~E~~~R~~iF~~N~~~I 86 (161)
..|...+++++..+ +-..+.++.+|++|+.. ..++.++ .+..|..|+.+|+|+|.+.+|..+|+.+|+.|+..+
T Consensus 27 ~~~~~~~~~~~~~~--~~v~~~~~~~i~~v~~~~~~~~~~l~--~~~~F~~F~~kf~r~Y~s~eE~~~Rl~iF~~N~~~a 102 (372)
T KOG1542|consen 27 RKCPIEFTALSVSL--SVVPLGDDLTIRQVVRLQDLNPRGLG--LEDSFKLFTIKFGRSYASREEHAHRLSIFKHNLLRA 102 (372)
T ss_pred hccchhhhhhhhhc--cccccchhhhhhhhhhhcccCCcccc--hHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHH
Confidence 34455455554443 33446678899998874 4566777 699999999999999999999999999999999999
Q ss_pred HHhcCCCC-CeeeeeCcCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCCcccccccCCCCCccccccCCCCCCCCCC
Q 037577 87 AEHQLLDP-TAVHGVTPFSDLSEEEFESMYTGMKGGPPVMDSGGLESGSVKMMEIDGFPENFDWREKGAVTEVKMQ 161 (161)
Q Consensus 87 ~~hN~~~~-sy~lgiN~FsDlT~eEf~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lP~s~DWR~kg~VtpVKnQ 161 (161)
++++..+. +..+|+|+|||||+|||++++++.+..... .+......+......+|++||||++|+|||||||
T Consensus 103 ~~~q~~d~gsA~yGvtqFSDlT~eEFkk~~l~~~~~~~~---~~~~~~~~~~~~~~~lP~~fDWR~kgaVTpVKnQ 175 (372)
T KOG1542|consen 103 ERLQENDPGSAEYGVTQFSDLTEEEFKKIYLGVKRRGSK---LPGDAAEAPIEPGESLPESFDWRDKGAVTPVKNQ 175 (372)
T ss_pred HHhhhcCccccccCccchhhcCHHHHHHHhhcccccccc---CccccccCcCCCCCCCCcccchhccCCccccccC
Confidence 99998876 899999999999999999999887653210 1222233333456789999999999999999999
No 2
>PTZ00203 cathepsin L protease; Provisional
Probab=99.95 E-value=2.9e-27 Score=197.65 Aligned_cols=109 Identities=35% Similarity=0.522 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeeeCcCCCCCHHHHHHHhcCCCC-CCCCCCCC
Q 037577 50 ATENNFKIFMQKYEKSYATREEYVHRLGIFAKNMIRAAEHQLLDPTAVHGVTPFSDLSEEEFESMYTGMKG-GPPVMDSG 128 (161)
Q Consensus 50 ~~~~~f~~fk~k~~K~Y~s~~E~~~R~~iF~~N~~~I~~hN~~~~sy~lgiN~FsDlT~eEf~~~~~g~~~-~~~~~~~~ 128 (161)
..+..|++||++|+|.|.+..|+..|+.+|++|+++|++||+.+.+|++|+|+|+|||+|||...+++... .... .
T Consensus 33 ~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~~~lg~N~FaDlT~eEf~~~~l~~~~~~~~~---~ 109 (348)
T PTZ00203 33 PAAALFEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQARNPHARFGITKFFDLSEAEFAARYLNGAAYFAAA---K 109 (348)
T ss_pred HHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccccccCCHHHHHHHhcCCCcccccc---c
Confidence 46778999999999999998899999999999999999999877799999999999999999987764221 1100 0
Q ss_pred CCCCCcccc--cccCCCCCccccccCCCCCCCCCC
Q 037577 129 GLESGSVKM--MEIDGFPENFDWREKGAVTEVKMQ 161 (161)
Q Consensus 129 ~~~~~~~~~--~~~~~lP~s~DWR~kg~VtpVKnQ 161 (161)
......... ....++|++||||++|+|||||||
T Consensus 110 ~~~~~~~~~~~~~~~~lP~~~DWR~~g~VtpVkdQ 144 (348)
T PTZ00203 110 QHAGQHYRKARADLSAVPDAVDWREKGAVTPVKNQ 144 (348)
T ss_pred ccccccccccccccccCCCCCcCCcCCCCCCcccc
Confidence 000000001 112368999999999999999999
No 3
>PTZ00200 cysteine proteinase; Provisional
Probab=99.91 E-value=8.7e-24 Score=181.48 Aligned_cols=114 Identities=30% Similarity=0.396 Sum_probs=84.2
Q ss_pred cCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeeeCcCCCCCHHHHHHHhcCCCCCCCCC-
Q 037577 47 LGSATENNFKIFMQKYEKSYATREEYVHRLGIFAKNMIRAAEHQLLDPTAVHGVTPFSDLSEEEFESMYTGMKGGPPVM- 125 (161)
Q Consensus 47 ~~~~~~~~f~~fk~k~~K~Y~s~~E~~~R~~iF~~N~~~I~~hN~~~~sy~lgiN~FsDlT~eEf~~~~~g~~~~~~~~- 125 (161)
++-....+|++|+++|+|.|.+..|+..|+.+|++|+++|++||. +.+|++|+|+|+|||+|||..++++...+....
T Consensus 118 ~e~e~~~~F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~-~~~y~lgiN~FsDlT~eEF~~~~~~~~~~~~~~~ 196 (448)
T PTZ00200 118 LEFEVYLEFEEFNKKYNRKHATHAERLNRFLTFRNNYLEVKSHKG-DEPYSKEINKFSDLTEEEFRKLFPVIKVPPKSNS 196 (448)
T ss_pred chHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhcC-cCCeEEeccccccCCHHHHHHHhccCCCcccccc
Confidence 333456689999999999999999999999999999999999996 458999999999999999998876643221000
Q ss_pred --CCCC-C---C-CCcc-cc--------cc----cCCCCCccccccCCCCCCCCCC
Q 037577 126 --DSGG-L---E-SGSV-KM--------ME----IDGFPENFDWREKGAVTEVKMQ 161 (161)
Q Consensus 126 --~~~~-~---~-~~~~-~~--------~~----~~~lP~s~DWR~kg~VtpVKnQ 161 (161)
.... . . .... .. .. ...+|+++|||++|+|||||||
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~g~vtpVkdQ 252 (448)
T PTZ00200 197 TSHNNDFKARHVSNPTYLKNLKKAKNTDEDVKDPSKITGEGLDWRRADAVTKVKDQ 252 (448)
T ss_pred cccccccccccccccccccccccccccccccccccccCCCCccCCCCCCCCCcccC
Confidence 0000 0 0 0000 00 00 1236999999999999999999
No 4
>PTZ00021 falcipain-2; Provisional
Probab=99.89 E-value=4.7e-23 Score=178.06 Aligned_cols=111 Identities=27% Similarity=0.329 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC-CCCeeeeeCcCCCCCHHHHHHHhcCCCCC--CCCCCC
Q 037577 51 TENNFKIFMQKYEKSYATREEYVHRLGIFAKNMIRAAEHQLL-DPTAVHGVTPFSDLSEEEFESMYTGMKGG--PPVMDS 127 (161)
Q Consensus 51 ~~~~f~~fk~k~~K~Y~s~~E~~~R~~iF~~N~~~I~~hN~~-~~sy~lgiN~FsDlT~eEf~~~~~g~~~~--~~~~~~ 127 (161)
...+|++||.+|+|.|.+.+|+..|+.+|.+|+++|++||+. +.+|++|+|+|+|||.|||+.++++.... ......
T Consensus 165 ~~~~F~~wk~ky~K~Y~~~eE~~~R~~iF~~Nl~~Ie~hN~~~~~ty~lgiNqFsDlT~EEF~~~~l~~~~~~~~~~~~~ 244 (489)
T PTZ00021 165 NVNSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMNRFGDLSFEEFKKKYLTLKSFDFKSNGKK 244 (489)
T ss_pred HHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEeccccccCCHHHHHHHhcccccccccccccc
Confidence 445799999999999999899999999999999999999975 46999999999999999999988774421 100000
Q ss_pred CCCCCC-c---ccccc--cCCCCCccccccCCCCCCCCCC
Q 037577 128 GGLESG-S---VKMME--IDGFPENFDWREKGAVTEVKMQ 161 (161)
Q Consensus 128 ~~~~~~-~---~~~~~--~~~lP~s~DWR~kg~VtpVKnQ 161 (161)
.+.... . ..... ....|+++|||++|+|||||||
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~P~s~DWR~~g~VtpVKdQ 284 (489)
T PTZ00021 245 SPRVINYDDVIKKYKPKDATFDHAKYDWRLHNGVTPVKDQ 284 (489)
T ss_pred ccccccccccccccccccccCCccccccccCCCCCCcccc
Confidence 000000 0 00001 1124999999999999999999
No 5
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....
Probab=99.80 E-value=2e-19 Score=113.80 Aligned_cols=57 Identities=42% Similarity=0.650 Sum_probs=50.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhc-CCCCCeeeeeCcCCCCCHHHH
Q 037577 55 FKIFMQKYEKSYATREEYVHRLGIFAKNMIRAAEHQ-LLDPTAVHGVTPFSDLSEEEF 111 (161)
Q Consensus 55 f~~fk~k~~K~Y~s~~E~~~R~~iF~~N~~~I~~hN-~~~~sy~lgiN~FsDlT~eEf 111 (161)
|+.|+++|+|.|.+..|+..|+.+|.+|++.|.+|| ..+.+|++|+|+|||||++||
T Consensus 1 F~~~~~~~~k~Y~~~~e~~~R~~~F~~N~~~I~~~N~~~~~~~~~~~N~fsD~t~eEf 58 (58)
T PF08246_consen 1 FEQFKKKYGKSYKSAEEEARRFAIFKENLRRIEEHNANGNNTYKLGLNQFSDMTPEEF 58 (58)
T ss_dssp HHHHHHHCT---SSHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEE-SSTTTTSSHHHH
T ss_pred CHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeCccccCcChhhC
Confidence 889999999999999999999999999999999999 667899999999999999997
No 6
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29). This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s
Probab=99.66 E-value=8.3e-17 Score=100.92 Aligned_cols=56 Identities=36% Similarity=0.603 Sum_probs=52.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC-CCeeeeeCcCCCCCHHH
Q 037577 55 FKIFMQKYEKSYATREEYVHRLGIFAKNMIRAAEHQLLD-PTAVHGVTPFSDLSEEE 110 (161)
Q Consensus 55 f~~fk~k~~K~Y~s~~E~~~R~~iF~~N~~~I~~hN~~~-~sy~lgiN~FsDlT~eE 110 (161)
|..|+.+|+|.|.+..|+..|+.+|.+|++.|..||..+ .+|++|+|+|||||++|
T Consensus 1 f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~i~~~N~~~~~~~~~~~N~fsDlt~eE 57 (57)
T smart00848 1 FEQWKKKYGKSYSSEEEELRRFEIFKENLKFIEEHNKKNDHSYTLGLNQFADLTNEE 57 (57)
T ss_pred ChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEecCcccccCCCCC
Confidence 689999999999999999999999999999999999754 68999999999999876
No 7
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=5.2e-15 Score=122.98 Aligned_cols=97 Identities=37% Similarity=0.550 Sum_probs=76.6
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC-CCCeeeeeCcCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCCcccc
Q 037577 59 MQKYEKSYATREEYVHRLGIFAKNMIRAAEHQLL-DPTAVHGVTPFSDLSEEEFESMYTGMKGGPPVMDSGGLESGSVKM 137 (161)
Q Consensus 59 k~k~~K~Y~s~~E~~~R~~iF~~N~~~I~~hN~~-~~sy~lgiN~FsDlT~eEf~~~~~g~~~~~~~~~~~~~~~~~~~~ 137 (161)
+.+|.+.|.+..|+..|+.+|.+|+++|..||.. ..+|.+|+|+|+|++.+|+...+.+...+.. ........
T Consensus 30 ~~~~~~~y~~~~~~~~r~~~f~~n~~~~~~~n~~~~~~~~~g~n~~~d~~~ee~~~~~~~~~~~~~------~~~~~~~~ 103 (325)
T KOG1543|consen 30 LVKFLKRYEDRVEKKARRAIFKENLQKIESHNLKYVLSFLMGVNQFADLTTEEFKRKKTGKKPPEI------KRDKFTEK 103 (325)
T ss_pred hhhhccccccHHHHHHHHHHHHHHHHHHHhhhhhhceeeeeccccccccchHHHHHhhccccCccc------cccccccc
Confidence 6677777777788999999999999999999987 7799999999999999999998877665431 00011111
Q ss_pred cccCCCCCccccccCCCCC-CCCCC
Q 037577 138 MEIDGFPENFDWREKGAVT-EVKMQ 161 (161)
Q Consensus 138 ~~~~~lP~s~DWR~kg~Vt-pVKnQ 161 (161)
.....+|++||||++|+|+ |||||
T Consensus 104 ~~~~~~p~s~DwR~~~~~~~~vkdQ 128 (325)
T KOG1543|consen 104 LDGDDLPDSFDWRDKGAVTPPVKDQ 128 (325)
T ss_pred cchhhCCCCccccccCCcCCCcCCC
Confidence 2345799999999998665 59998
No 8
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=96.52 E-value=0.0013 Score=58.47 Aligned_cols=21 Identities=19% Similarity=0.445 Sum_probs=19.3
Q ss_pred CCCCCccccccCC---CCCCCCCC
Q 037577 141 DGFPENFDWREKG---AVTEVKMQ 161 (161)
Q Consensus 141 ~~lP~s~DWR~kg---~VtpVKnQ 161 (161)
.++|++||||++| +|+|||||
T Consensus 203 ~~LP~sfDWR~~gg~~~VtpVrdQ 226 (548)
T PTZ00364 203 DPPPAAWSWGDVGGASFLPAAPPA 226 (548)
T ss_pred cCCCCccccCcCCCCccCCCCcCC
Confidence 5799999999998 79999999
No 9
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=96.19 E-value=0.0042 Score=36.34 Aligned_cols=35 Identities=17% Similarity=0.049 Sum_probs=21.9
Q ss_pred HHHHHhcCCCCCeeeeeCcCCCCCHHHHHHHhcCCCC
Q 037577 84 IRAAEHQLLDPTAVHGVTPFSDLSEEEFESMYTGMKG 120 (161)
Q Consensus 84 ~~I~~hN~~~~sy~lgiN~FsDlT~eEf~~~~~g~~~ 120 (161)
++|+..|..+.+|+.|.| |.+.|.+.++++ +|...
T Consensus 4 e~I~~IN~~~~tWkAG~N-F~~~~~~~ik~L-lGv~~ 38 (41)
T PF08127_consen 4 EFIDYINSKNTTWKAGRN-FENTSIEYIKRL-LGVLP 38 (41)
T ss_dssp HHHHHHHHCT-SEEE-----SSB-HHHHHHC-S-B-T
T ss_pred HHHHHHHcCCCcccCCCC-CCCCCHHHHHHH-cCCCC
Confidence 467888887889999999 899999988875 67543
No 10
>PTZ00049 cathepsin C-like protein; Provisional
Probab=94.93 E-value=0.014 Score=53.20 Aligned_cols=22 Identities=36% Similarity=0.697 Sum_probs=19.3
Q ss_pred cCCCCCccccccC----CCCCCCCCC
Q 037577 140 IDGFPENFDWREK----GAVTEVKMQ 161 (161)
Q Consensus 140 ~~~lP~s~DWR~k----g~VtpVKnQ 161 (161)
...+|++||||++ |+|+|||||
T Consensus 378 ~~~LP~sfDWRd~~~~~~~vtpVkdQ 403 (693)
T PTZ00049 378 IDELPKNFTWGDPFNNNTREYDVTNQ 403 (693)
T ss_pred cccCCCCEecCcCCCCCCcccCCCCC
Confidence 3579999999995 689999999
No 11
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=91.97 E-value=0.064 Score=45.37 Aligned_cols=20 Identities=45% Similarity=0.740 Sum_probs=19.1
Q ss_pred CCCCccccccCCCCCCCCCC
Q 037577 142 GFPENFDWREKGAVTEVKMQ 161 (161)
Q Consensus 142 ~lP~s~DWR~kg~VtpVKnQ 161 (161)
.+|..||||+.|.|+|||+|
T Consensus 98 s~~~~fd~r~~g~vs~v~dQ 117 (372)
T COG4870 98 SLPSYFDRRDEGKVSPVKDQ 117 (372)
T ss_pred cchhheeeeccCCccccccc
Confidence 48999999999999999999
No 12
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=76.46 E-value=2.1 Score=29.55 Aligned_cols=13 Identities=23% Similarity=0.028 Sum_probs=5.6
Q ss_pred CCCCcccHHHHHHH
Q 037577 1 MATTQSPALTCAIG 14 (161)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (161)
|++-. ++++++||
T Consensus 1 MaSK~-~llL~l~L 13 (95)
T PF07172_consen 1 MASKA-FLLLGLLL 13 (95)
T ss_pred CchhH-HHHHHHHH
Confidence 66433 33333333
No 13
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only]
Probab=67.30 E-value=2.4 Score=35.83 Aligned_cols=75 Identities=13% Similarity=0.055 Sum_probs=47.7
Q ss_pred HHHHHHhcCCCCCeeee-eCcCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCCcc--cccccCCCCCccccccC--CCCCC
Q 037577 83 MIRAAEHQLLDPTAVHG-VTPFSDLSEEEFESMYTGMKGGPPVMDSGGLESGSV--KMMEIDGFPENFDWREK--GAVTE 157 (161)
Q Consensus 83 ~~~I~~hN~~~~sy~lg-iN~FsDlT~eEf~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~lP~s~DWR~k--g~Vtp 157 (161)
-..|++.|..+-+|+.+ .-+|=.||.++-.+..+|...+...+ ...+.. .......+|+.||-++| |.+.|
T Consensus 150 Pd~iE~in~G~YgW~A~NYSaFWGmtL~DGiKyRLGTL~Ps~sv----~nMNEi~~~l~p~~~LPE~F~As~KWp~liH~ 225 (470)
T KOG1544|consen 150 PDMIEAINQGNYGWQAGNYSAFWGMTLDDGIKYRLGTLRPSSSV----MNMNEIYTVLNPGEVLPEAFEASEKWPNLIHE 225 (470)
T ss_pred HHHHHHHhcCCccccccchhhhhcccccccceeeecccCchhhh----hhHHhHhhccCcccccchhhhhhhcCCccccC
Confidence 34677777666567653 44788899877555567755443211 111111 12234689999999998 78899
Q ss_pred CCCC
Q 037577 158 VKMQ 161 (161)
Q Consensus 158 VKnQ 161 (161)
|-||
T Consensus 226 plDQ 229 (470)
T KOG1544|consen 226 PLDQ 229 (470)
T ss_pred cccc
Confidence 9887
No 14
>PF01456 Mucin: Mucin-like glycoprotein; InterPro: IPR000458 This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated []. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells.
Probab=56.48 E-value=7.9 Score=28.00 Aligned_cols=13 Identities=38% Similarity=0.470 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHH
Q 037577 8 ALTCAIGVTLLTY 20 (161)
Q Consensus 8 ~~~~~~~~~~~~~ 20 (161)
++.|+||+++|-|
T Consensus 5 RLLCalLvlaLcC 17 (143)
T PF01456_consen 5 RLLCALLVLALCC 17 (143)
T ss_pred HHHHHHHHHHHHc
Confidence 5789999999943
No 15
>PF03823 Neurokinin_B: Neurokinin B; InterPro: IPR003635 Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. This family includes neurokinins, as well as many other peptides. Like other tachykinins, neurokinins are synthesized as larger protein precursors that are enzymatically converted to their mature forms.; GO: 0007217 tachykinin receptor signaling pathway
Probab=49.50 E-value=19 Score=22.42 Aligned_cols=18 Identities=28% Similarity=0.178 Sum_probs=10.2
Q ss_pred cccHHHHHHHHHHHHHHH
Q 037577 5 QSPALTCAIGVTLLTYAL 22 (161)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~ 22 (161)
||.+++++||++.|+-++
T Consensus 2 R~~lLf~aiLalsla~s~ 19 (59)
T PF03823_consen 2 RSTLLFAAILALSLARSF 19 (59)
T ss_pred hhHHHHHHHHHHHHHHHh
Confidence 345566666666655444
No 16
>PF05887 Trypan_PARP: Procyclic acidic repetitive protein (PARP); InterPro: IPR008882 This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of T. brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated [].; GO: 0016020 membrane; PDB: 2X34_B 2X32_B.
Probab=49.13 E-value=5.6 Score=29.19 Aligned_cols=18 Identities=11% Similarity=0.078 Sum_probs=0.0
Q ss_pred CcccHHHHHHHHHHHHHH
Q 037577 4 TQSPALTCAIGVTLLTYA 21 (161)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~ 21 (161)
+|++.+.++||+.++..+
T Consensus 3 pr~l~~LavLL~~A~Lfa 20 (143)
T PF05887_consen 3 PRHLCLLAVLLFGAALFA 20 (143)
T ss_dssp ------------------
T ss_pred cccccccccccccccccc
Confidence 466666666665544333
No 17
>PRK14756 hypothetical protein; Provisional
Probab=46.96 E-value=38 Score=18.01 Aligned_cols=23 Identities=30% Similarity=0.153 Sum_probs=9.3
Q ss_pred CCCCcccHHHHHHHHHHHHHHHh
Q 037577 1 MATTQSPALTCAIGVTLLTYALT 23 (161)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (161)
|++-...-++..+.++.++.+.+
T Consensus 1 M~tdLK~SL~tTvvaL~~Iva~~ 23 (29)
T PRK14756 1 MSTDLKFSLVTTIIVLGLIVAVG 23 (29)
T ss_pred CCcchhhhHHHHHHHHHHHHHHH
Confidence 44444443444333333333333
No 18
>TIGR02781 VirB9 P-type conjugative transfer protein VirB9. The VirB9 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in a type IV secretion system. VirB9 is a homolog of the F-type conjugative transfer system TraK protein (which is believed to be an outer membrane pore-forming secretin, TIGR02756) as well as the Ti system TrbG protein.
Probab=39.76 E-value=32 Score=27.45 Aligned_cols=29 Identities=24% Similarity=0.241 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHhhhccC-CCCCCcccc
Q 037577 9 LTCAIGVTLLTYALTLSSAL-VPQNPTIRQ 37 (161)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 37 (161)
+.|++++++++.+.+...+. ...|+.|+.
T Consensus 3 l~~~~~~~~~~~a~A~~~P~~~~~D~Ri~~ 32 (243)
T TIGR02781 3 LIALLLLTLAIPAYALNTPRGSSYDSRIRT 32 (243)
T ss_pred HHHHHHHHhhhhhHHhhCCCCCCCCCceEE
Confidence 34444443333333333332 345777775
No 19
>PF15240 Pro-rich: Proline-rich
Probab=37.11 E-value=29 Score=26.74 Aligned_cols=6 Identities=67% Similarity=0.545 Sum_probs=2.4
Q ss_pred hhhccC
Q 037577 23 TLSSAL 28 (161)
Q Consensus 23 ~~~~~~ 28 (161)
++|.|.
T Consensus 12 ALSSAQ 17 (179)
T PF15240_consen 12 ALSSAQ 17 (179)
T ss_pred Hhhhcc
Confidence 444343
No 20
>PF15284 PAGK: Phage-encoded virulence factor
Probab=34.88 E-value=31 Score=21.77 Aligned_cols=7 Identities=14% Similarity=0.088 Sum_probs=2.8
Q ss_pred hhhccCC
Q 037577 23 TLSSALV 29 (161)
Q Consensus 23 ~~~~~~~ 29 (161)
++++-++
T Consensus 21 SasamAa 27 (61)
T PF15284_consen 21 SASAMAA 27 (61)
T ss_pred hHHHHHH
Confidence 4443333
No 21
>PRK02710 plastocyanin; Provisional
Probab=31.51 E-value=37 Score=23.86 Aligned_cols=14 Identities=14% Similarity=0.162 Sum_probs=5.9
Q ss_pred CCCCcccHHHHHHH
Q 037577 1 MATTQSPALTCAIG 14 (161)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (161)
|+.-.+++..++|+
T Consensus 1 ~~~~~~~~~~~~~~ 14 (119)
T PRK02710 1 MAKRLRSIAAALVA 14 (119)
T ss_pred CchhHHHHHHHHHH
Confidence 44434444444444
No 22
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=28.09 E-value=56 Score=22.91 Aligned_cols=13 Identities=8% Similarity=0.031 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 037577 9 LTCAIGVTLLTYA 21 (161)
Q Consensus 9 ~~~~~~~~~~~~~ 21 (161)
++++||+++|+++
T Consensus 6 il~llLll~l~as 18 (107)
T PF15330_consen 6 ILALLLLLSLAAS 18 (107)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 23
>PF00918 Gastrin: Gastrin/cholecystokinin family; InterPro: IPR001651 Gastrin and cholecystokinin (CCK) are structurally and functionally related peptide hormones that function as hormonal regulators of various digestive processes and feeding behaviors. They are known to induce gastric secretion, stimulate pancreatic secretion, increase blood circulation and water secretion in the stomach and intestine, and stimulate smooth muscle contraction. Originally found in the gut, these hormones have since been shown to be present in various parts of the nervous system. Like many other active peptides they are synthesized as larger protein precursors that are enzymatically converted to their mature forms. They are found in several molecular forms due to tissue-specific post-translational processing. The biological activity of gastrin and CCK is associated with the last five C-terminal residues. One or two positions downstream, there is a conserved sulphated tyrosine residue. The amphibian caerulein skin peptide, the cockroach leukosulphakinin I and II (LSK) peptides, Drosophila melanogaster (Fruit fly) putative CCK-homologs Drosulphakinins I and II, cionin, a Gallus gallus (Chicken) gastrin/cholecystokinin-like peptide and cionin, a neuropeptide from the protochordate Ciona intestinalis belong to the same family.; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=27.00 E-value=23 Score=25.21 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 037577 8 ALTCAIGVTLLTYALTLS 25 (161)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~ 25 (161)
+.+|+||+++++++++..
T Consensus 4 icvcvLlavLs~~~l~~p 21 (116)
T PF00918_consen 4 ICVCVLLAVLSTSCLSQP 21 (116)
T ss_pred EEeeHHHHHHHHhhccCC
Confidence 346888887777655433
No 24
>PF05391 Lsm_interact: Lsm interaction motif; InterPro: IPR008669 This short motif is found at the C terminus of Prp24 proteins and probably interacts with the Lsm proteins to promote U4/U6 formation [].
Probab=26.05 E-value=59 Score=16.10 Aligned_cols=12 Identities=25% Similarity=0.592 Sum_probs=8.6
Q ss_pred CCCHHHHHHHhc
Q 037577 105 DLSEEEFESMYT 116 (161)
Q Consensus 105 DlT~eEf~~~~~ 116 (161)
-++.++|+++++
T Consensus 9 p~SNddFrkmfl 20 (21)
T PF05391_consen 9 PKSNDDFRKMFL 20 (21)
T ss_pred ccchHHHHHHHc
Confidence 367788888765
No 25
>KOG4702 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.28 E-value=2.1e+02 Score=18.68 Aligned_cols=34 Identities=15% Similarity=0.286 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Q 037577 51 TENNFKIFMQKYEKSYATREEYVHRLGIFAKNMIR 85 (161)
Q Consensus 51 ~~~~f~~fk~k~~K~Y~s~~E~~~R~~iF~~N~~~ 85 (161)
-..-|+.|+.+|++.-.++ |...|..-|.+-++.
T Consensus 27 Qpe~Fee~v~~~krel~pp-e~~~~~EE~~~~lRe 60 (77)
T KOG4702|consen 27 QPEIFEEFVRGYKRELSPP-EATKRKEEYENFLRE 60 (77)
T ss_pred ChHHHHHHHHhccccCCCh-HHHhhHHHHHHHHHH
Confidence 4557999999999977653 445566655554443
No 26
>PRK10533 putative lipoprotein; Provisional
Probab=23.18 E-value=1.1e+02 Score=23.36 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=23.0
Q ss_pred cHHHHHHHHHHHHHHHhhhccCCCC-----CCccccccCCccccccCchHHHHHHHHHHHh
Q 037577 7 PALTCAIGVTLLTYALTLSSALVPQ-----NPTIRQVTDNPSHLLLGSATENNFKIFMQKY 62 (161)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~f~~fk~k~ 62 (161)
++++|+||+-+| ++++++..| .|+ |.++++ .+.++|-.....+
T Consensus 8 ~~~p~alllsac----ttv~pa~kd~g~r~~~c---v~ggpd------~vaqqfyd~riq~ 55 (171)
T PRK10533 8 LLIPCALLLSAC----TTVTPAYKDNGSRSGPC---VEGGPD------SVAQQFYDYRIQH 55 (171)
T ss_pred HHHHHHHHHhHc----cccccccccCCCccccC---cCCCch------HHHHHHHHHHhcc
Confidence 455565555444 334444322 233 455444 4677787777666
No 27
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=22.87 E-value=1.3e+02 Score=18.96 Aligned_cols=17 Identities=6% Similarity=0.053 Sum_probs=9.8
Q ss_pred HHHhhhccCCCCCCccc
Q 037577 20 YALTLSSALVPQNPTIR 36 (161)
Q Consensus 20 ~~~~~~~~~~~~~~~~~ 36 (161)
...++-.+..+++|.-.
T Consensus 18 ~vQ~APQYa~GeeP~YD 34 (65)
T PF10731_consen 18 IVQSAPQYAPGEEPSYD 34 (65)
T ss_pred HHhcCcccCCCCCCCcC
Confidence 33455555566777654
No 28
>PF10311 Ilm1: Increased loss of mitochondrial DNA protein 1; InterPro: IPR018815 This is a family of proteins of approximately 200 residues that are conserved in fungi. Ilm1 is part of the peroxisome, a complex that is the sole site of beta-oxidation in Saccharomyces cerevisiae (Baker's yeast) and known to be required for optimal growth in the presence of fatty acid. Ilm1 may participate in the control of the C16/C18 ratio since it interacts strongly with Mga2p, a transcription factor that controls expression of Ole1, the sole fatty acyl desaturase in S. cerevisiae responsible for conversion of the saturated fatty acids stearate (C18) and palmitate (C16) to oleate and palmitoleate, respectively [].
Probab=22.27 E-value=95 Score=23.54 Aligned_cols=20 Identities=15% Similarity=0.401 Sum_probs=15.5
Q ss_pred CCCCcccHHHHHHHHHHHHH
Q 037577 1 MATTQSPALTCAIGVTLLTY 20 (161)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (161)
|+++++++..|+++++.++.
T Consensus 49 ~~~~s~~la~~~vll~~~al 68 (165)
T PF10311_consen 49 FSRPSPPLAFCGVLLLFLAL 68 (165)
T ss_pred CCCCCcHHHHHHHHHHHHHH
Confidence 46788888889888877753
No 29
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=22.05 E-value=1e+02 Score=20.90 Aligned_cols=16 Identities=13% Similarity=0.324 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHhhhcc
Q 037577 12 AIGVTLLTYALTLSSA 27 (161)
Q Consensus 12 ~~~~~~~~~~~~~~~~ 27 (161)
+|.+++|+..++++++
T Consensus 7 iLslLAVtLtVALAAP 22 (100)
T PF05984_consen 7 ILSLLAVTLTVALAAP 22 (100)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 3344444444444443
No 30
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=21.99 E-value=3.3e+02 Score=19.96 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=32.4
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeeeCcCCCCCHHHHHHHh
Q 037577 56 KIFMQKYEKSYATREEYVHRLGIFAKNMIRAAEHQLLDPTAVHGVTPFSDLSEEEFESMY 115 (161)
Q Consensus 56 ~~fk~k~~K~Y~s~~E~~~R~~iF~~N~~~I~~hN~~~~sy~lgiN~FsDlT~eEf~~~~ 115 (161)
+.++...+....+......|-.+|.+.+..+--...- =++|+. .|++|+..++
T Consensus 63 ~~~k~~~g~~~~~~~~~q~~~qvW~~~V~~~ll~~e~---eklGi~----Vs~~El~d~l 115 (145)
T PF13623_consen 63 ENYKQQNGRSPTEQEQNQIRNQVWNQMVQNILLEQEF---EKLGIT----VSDDELQDML 115 (145)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCc----cCHHHHHHHH
Confidence 3455566665544444678889999888775443321 123432 5899998875
No 31
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=21.51 E-value=49 Score=22.32 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.1
Q ss_pred CcCCCCCHHHHHHHhcC
Q 037577 101 TPFSDLSEEEFESMYTG 117 (161)
Q Consensus 101 N~FsDlT~eEf~~~~~g 117 (161)
|.++|+|.+||..++..
T Consensus 5 ~~i~dyTE~EFl~~v~~ 21 (85)
T PF01320_consen 5 NKISDYTESEFLEFVKE 21 (85)
T ss_dssp SSGGGSBHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHH
Confidence 57899999999987643
No 32
>COG3678 CpxP P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein [Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism]
Probab=21.01 E-value=92 Score=23.45 Aligned_cols=9 Identities=11% Similarity=0.172 Sum_probs=3.7
Q ss_pred cHHHHHHHH
Q 037577 7 PALTCAIGV 15 (161)
Q Consensus 7 ~~~~~~~~~ 15 (161)
++..++|+.
T Consensus 8 ~v~a~al~~ 16 (160)
T COG3678 8 AVGAAALAL 16 (160)
T ss_pred HHHHHHHHh
Confidence 334444444
No 33
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=20.29 E-value=1.1e+02 Score=21.80 Aligned_cols=19 Identities=26% Similarity=0.238 Sum_probs=15.0
Q ss_pred CcccHHHHHHHHHHHHHHH
Q 037577 4 TQSPALTCAIGVTLLTYAL 22 (161)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~ 22 (161)
.+|+.++++|++++|+.++
T Consensus 59 ~~~lffvglii~LivSLaL 77 (128)
T PF15145_consen 59 SRSLFFVGLIIVLIVSLAL 77 (128)
T ss_pred ceeehHHHHHHHHHHHHHH
Confidence 3678888888888887766
Done!