BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037578
         (506 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WIN|A Chain A, Solution Structure Of The Band 7 Domain Of The Mouse
           Flotillin 2 Protein
          Length = 143

 Score = 32.7 bits (73), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 3/81 (3%)

Query: 90  RNSVHVREIVKGIIEGETRVLAASMTMEEVFKGTKQFKQEVFGKVQLELNQFGLVIYNAN 149
           +N   ++ +V   +EG  R +  ++T+E++++   QF + V      ++ + G+ I +  
Sbjct: 59  KNVQDIKNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFT 118

Query: 150 IKQLVDVPGHEYFSYLGQKTQ 170
           IK + D    +Y S LG KTQ
Sbjct: 119 IKDVYDKV--DYLSSLG-KTQ 136


>pdb|2XC1|A Chain A, Full-Length Tailspike Protein Mutant Y108w Of
           Bacteriophage P22
 pdb|2XC1|B Chain B, Full-Length Tailspike Protein Mutant Y108w Of
           Bacteriophage P22
 pdb|2XC1|C Chain C, Full-Length Tailspike Protein Mutant Y108w Of
           Bacteriophage P22
          Length = 666

 Score = 32.3 bits (72), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 5/75 (6%)

Query: 136 LELNQFGLVIYNANIKQLVDVPGHEYFSYLGQKTQME-AANQAKVD----VAEARMKGEV 190
           L +N  G ++YN  + ++V V GH    Y    +Q++  AN  K D      EA  K + 
Sbjct: 64  LIINAAGKIVYNGQLVKIVTVQGHSMAIYDANGSQVDYIANVLKWDPDQYSIEADKKFKY 123

Query: 191 GAKLREGQTLQNAAK 205
             KL +  TLQ+AA 
Sbjct: 124 SVKLSDYPTLQDAAS 138


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.131    0.363 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,036,317
Number of Sequences: 62578
Number of extensions: 433150
Number of successful extensions: 1064
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1059
Number of HSP's gapped (non-prelim): 18
length of query: 506
length of database: 14,973,337
effective HSP length: 103
effective length of query: 403
effective length of database: 8,527,803
effective search space: 3436704609
effective search space used: 3436704609
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)