Query 037578
Match_columns 506
No_of_seqs 262 out of 1749
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 13:44:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037578.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037578hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2668 Flotillins [Intracellu 100.0 9.9E-65 2.2E-69 498.3 41.3 411 2-477 1-426 (428)
2 COG2268 Uncharacterized protei 100.0 1.9E-47 4E-52 403.4 49.0 461 2-476 34-530 (548)
3 cd03405 Band_7_HflC Band_7_Hfl 100.0 9.8E-28 2.1E-32 236.6 24.4 201 3-213 1-206 (242)
4 cd03407 Band_7_4 A subgroup of 100.0 1.9E-27 4.2E-32 237.6 23.7 186 8-205 1-189 (262)
5 TIGR01932 hflC HflC protein. H 100.0 2.2E-26 4.7E-31 235.8 26.5 195 2-205 19-253 (317)
6 PRK11029 FtsH protease regulat 99.9 5.9E-26 1.3E-30 232.6 25.9 204 1-213 18-271 (334)
7 TIGR01933 hflK HflK protein. H 99.9 8.1E-26 1.8E-30 225.7 23.6 196 3-213 1-203 (261)
8 cd03401 Band_7_prohibitin Band 99.9 8.4E-26 1.8E-30 215.8 21.3 164 2-175 1-168 (196)
9 cd03404 Band_7_HflK Band_7_Hfl 99.9 1.2E-25 2.6E-30 225.0 22.7 202 1-216 13-233 (266)
10 cd03403 Band_7_stomatin_like B 99.9 1.3E-25 2.9E-30 217.5 22.0 178 6-197 1-182 (215)
11 cd03406 Band_7_3 A subgroup of 99.9 6.8E-24 1.5E-28 212.6 27.4 185 2-196 4-203 (280)
12 PRK10930 FtsH protease regulat 99.9 8.2E-24 1.8E-28 222.5 24.5 198 2-213 96-299 (419)
13 KOG2620 Prohibitins and stomat 99.9 1.4E-25 3.1E-30 215.0 7.7 180 6-197 12-195 (301)
14 cd03402 Band_7_2 A subgroup of 99.9 2.7E-22 5.8E-27 195.1 18.7 169 2-185 1-180 (219)
15 COG0330 HflC Membrane protease 99.9 6.7E-22 1.5E-26 200.4 21.9 182 2-197 20-211 (291)
16 smart00244 PHB prohibitin homo 99.9 2.6E-21 5.7E-26 177.7 18.3 153 2-167 2-158 (160)
17 PF01145 Band_7: SPFH domain / 99.9 3.5E-22 7.5E-27 186.7 12.1 172 4-185 1-178 (179)
18 KOG2621 Prohibitins and stomat 99.9 2E-21 4.4E-26 188.7 12.2 174 2-189 54-232 (288)
19 cd03399 Band_7_flotillin Band_ 99.8 6.2E-20 1.3E-24 163.9 14.5 124 39-168 2-127 (128)
20 cd03408 Band_7_5 A subgroup of 99.6 2.7E-15 5.9E-20 144.3 15.2 158 2-166 15-204 (207)
21 cd03400 Band_7_1 A subgroup of 99.5 7.3E-14 1.6E-18 123.9 11.0 119 39-167 3-122 (124)
22 cd02106 Band_7 The band 7 doma 99.3 4.7E-11 1E-15 103.5 12.4 105 51-167 15-119 (121)
23 KOG3090 Prohibitin-like protei 99.2 7.5E-10 1.6E-14 104.9 17.4 185 3-197 39-229 (290)
24 KOG2668 Flotillins [Intracellu 99.1 7.5E-09 1.6E-13 103.8 21.5 224 105-390 138-365 (428)
25 KOG3083 Prohibitin [Posttransl 99.0 2E-09 4.2E-14 102.1 10.7 185 3-197 28-218 (271)
26 KOG2962 Prohibitin-related mem 98.5 2.2E-05 4.8E-10 75.2 21.5 148 3-157 23-177 (322)
27 PTZ00491 major vault protein; 98.5 0.00014 3E-09 81.8 29.0 154 4-166 465-650 (850)
28 PF13421 Band_7_1: SPFH domain 98.2 9.4E-05 2E-09 71.9 17.9 156 4-166 17-204 (211)
29 COG2268 Uncharacterized protei 98.0 0.0014 3.1E-08 71.0 24.1 13 21-33 69-81 (548)
30 COG4260 Membrane protease subu 97.7 0.00046 9.9E-09 68.4 12.9 131 28-166 87-231 (345)
31 PTZ00121 MAEBL; Provisional 97.0 0.91 2E-05 54.3 29.0 15 4-18 908-922 (2084)
32 cd03404 Band_7_HflK Band_7_Hfl 96.7 0.021 4.6E-07 57.2 12.2 54 352-407 212-265 (266)
33 TIGR01932 hflC HflC protein. H 96.4 0.077 1.7E-06 54.8 14.5 65 353-427 244-308 (317)
34 TIGR01933 hflK HflK protein. H 96.3 0.074 1.6E-06 53.1 13.5 40 361-400 194-233 (261)
35 PTZ00121 MAEBL; Provisional 96.2 4.3 9.3E-05 49.0 29.8 13 161-173 1093-1105(2084)
36 cd03405 Band_7_HflC Band_7_Hfl 95.6 0.13 2.9E-06 50.5 11.7 42 353-394 189-230 (242)
37 PRK11029 FtsH protease regulat 95.4 0.31 6.6E-06 50.8 13.8 40 361-400 262-301 (334)
38 PRK10930 FtsH protease regulat 95.2 0.62 1.3E-05 50.0 15.7 40 377-427 306-345 (419)
39 cd03407 Band_7_4 A subgroup of 94.7 1 2.3E-05 45.0 14.9 35 354-388 181-215 (262)
40 PF12127 YdfA_immunity: SigmaW 91.8 2 4.3E-05 43.1 11.1 102 40-157 121-223 (316)
41 COG3064 TolA Membrane protein 91.5 18 0.0004 37.0 19.2 7 447-453 301-307 (387)
42 PTZ00491 major vault protein; 85.3 42 0.00091 39.0 17.2 40 339-378 728-767 (850)
43 PRK13665 hypothetical protein; 83.3 7.1 0.00015 39.1 8.9 101 40-157 126-228 (316)
44 PF11978 MVP_shoulder: Shoulde 80.2 10 0.00022 33.4 7.7 98 52-155 11-116 (118)
45 COG0330 HflC Membrane protease 78.9 20 0.00042 36.2 10.9 22 369-390 225-246 (291)
46 KOG2620 Prohibitins and stomat 73.3 57 0.0012 32.8 11.7 28 361-388 213-240 (301)
47 PRK13665 hypothetical protein; 68.5 14 0.00031 37.0 6.4 37 361-397 264-301 (316)
48 cd03406 Band_7_3 A subgroup of 67.7 41 0.00088 34.3 9.9 15 314-328 240-254 (280)
49 PF12127 YdfA_immunity: SigmaW 63.7 15 0.00032 37.1 5.5 38 360-397 258-296 (316)
50 KOG2962 Prohibitin-related mem 55.1 1.5E+02 0.0032 29.4 10.5 8 57-64 73-80 (322)
51 COG3064 TolA Membrane protein 52.7 2.9E+02 0.0062 28.7 27.6 11 443-453 301-311 (387)
52 PRK01558 V-type ATP synthase s 52.5 1.3E+02 0.0028 28.8 10.0 6 420-425 119-124 (198)
53 PRK01005 V-type ATP synthase s 50.4 2.4E+02 0.0052 27.4 11.5 6 410-415 151-156 (207)
54 COG1580 FliL Flagellar basal b 49.8 45 0.00097 31.1 6.0 50 103-153 105-156 (159)
55 KOG1029 Endocytic adaptor prot 46.6 4.6E+02 0.01 30.6 14.0 12 79-90 195-206 (1118)
56 PF03748 FliL: Flagellar basal 43.2 73 0.0016 26.3 6.0 49 103-153 46-96 (99)
57 PF06713 bPH_4: Bacterial PH d 36.5 1.7E+02 0.0037 23.3 6.8 64 4-80 3-68 (74)
58 COG1871 CheD Chemotaxis protei 29.8 60 0.0013 30.3 3.4 31 3-33 17-56 (164)
59 COG4864 Uncharacterized protei 28.8 1.2E+02 0.0027 29.7 5.5 26 372-397 275-300 (328)
60 PRK13454 F0F1 ATP synthase sub 25.7 5.6E+02 0.012 24.0 13.3 9 405-413 152-160 (181)
61 PRK06328 type III secretion sy 24.1 6.8E+02 0.015 24.4 11.2 6 420-425 132-137 (223)
62 PRK07718 fliL flagellar basal 24.1 2.7E+02 0.0058 25.2 6.7 46 106-153 92-139 (142)
63 PRK07021 fliL flagellar basal 24.0 5.7E+02 0.012 23.5 11.2 48 106-153 108-159 (162)
64 PRK01005 V-type ATP synthase s 22.5 7.1E+02 0.015 24.1 14.2 8 466-473 159-166 (207)
No 1
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=100.00 E-value=9.9e-65 Score=498.33 Aligned_cols=411 Identities=38% Similarity=0.550 Sum_probs=336.2
Q ss_pred cEEEecCCeEEEEEccCCCceeecCcEEEecCceeeEEEeeeeeeecccc-eecCCCcEEEEeEEEEEecCCCCHHHHHH
Q 037578 2 YYKVAGASQFLAITGSGIDDVKLAKKAFIWPFQQCTVFDITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGPREDDSDSLLR 80 (506)
Q Consensus 2 ~y~~~~p~ealVvtg~g~~rvv~gG~~fviP~q~v~~vslr~~~i~~~~~-~~T~D~v~v~V~av~~v~v~~~d~~~i~~ 80 (506)
+|++|+|+++|+|||+|..+++.-.+.|+||||+|.+||+.++++++.++ ++|++++|++|+++|+++|..+|++.++.
T Consensus 1 ~f~~~~~~~~l~itg~g~~~~~lv~~~wvf~wq~~q~~~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~elL~ 80 (428)
T KOG2668|consen 1 MFKVAGASQYLAITGGGIEDIKLVKKSWVFPWQQCTVFDVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADELLL 80 (428)
T ss_pred CCccCCccceEEeecccccCceecccceeeeeeeeeEEeecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHHHHH
Confidence 58999999999999999877776667777788999999999999999988 89999999999999999998778777776
Q ss_pred HHH-hhccCCCCHHHHHHHHHHHHHHHHHHhhhhccHHHHHhcHHHHHHHHHHHHHHHHhhccceeeeeeecccccCCCc
Q 037578 81 YAK-LIAPKDRNSVHVREIVKGIIEGETRVLAASMTMEEVFKGTKQFKQEVFGKVQLELNQFGLVIYNANIKQLVDVPGH 159 (506)
Q Consensus 81 aa~-~~~~~~~~~~~i~~~v~~~leg~lR~iig~mtleei~~~R~~f~~~V~~~~~~dl~~~Gl~I~sv~IkdI~d~~g~ 159 (506)
+++ .|+ |++..+|..++..+|+||+|.++|+||+||||.||++|...|++.+..||..|||.|.|++|+|+.|.+|.
T Consensus 81 ~A~e~fl--gK~~~eIn~~vl~tlEGh~Rai~asmTvEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g~ 158 (428)
T KOG2668|consen 81 YACEQFL--GKSSNEINELVLGTLEGHTRAILASMTVEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPGH 158 (428)
T ss_pred HHHHHhc--CCCHHHHHHHHHHHhhhHHHHHHHhccHHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccch
Confidence 665 564 57889999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hHHHHhhhhhhhHHHhHhHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHhhhhhHhHhhhHH
Q 037578 160 EYFSYLGQKTQMEAANQAKVDVAEARMKGEVGAKLREGQTLQNAAKIDAETKVVKIQREGQGQKEEMRVKTEVKVFENQR 239 (506)
Q Consensus 160 ~y~~alg~~~~A~~~~~A~i~~Aeaer~~~i~~aeae~~~~~~~Ak~~~e~~Ia~a~~~~~~~~ae~~~~~~i~~a~~~~ 239 (506)
+||.+||+...+++.|+|+|.+||++++.-| .|+.+.+..+.+++.+|+.|+
T Consensus 159 ~YlssLGka~taev~rdArIgvAEAk~eaGi--kEa~~~~~~~aak~~aetkI~-------------------------- 210 (428)
T KOG2668|consen 159 EYLSSLGKATTAEVARDARIGVAEAKREAGI--KEATGLTEQNAAKIDAETKIA-------------------------- 210 (428)
T ss_pred HHHHHhhhHHHHHHHhhcccchHHhhhhcch--hhhhHHHHHhHHhhhhhhhHH--------------------------
Confidence 7999999999999999999999999985555 555566666777777777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHH--HHHHHHHHHHHHhhhhhhhH
Q 037578 240 EAEVAEANADLAKKKAGWAKEAKVAEVESAKAVALRDAELQREV----------EKMN--AATRMEKLRAEFVSKANVEY 307 (506)
Q Consensus 240 e~~~A~a~a~~~~~~a~~~~e~~~a~a~a~~a~~~~~~~~q~ev----------~~~~--~~~~~~~l~~e~~~~A~~~~ 307 (506)
.++++++++++.+..+++..+++|+++|+++.+..++.+ ++.+ ++++++..+.+.++.|.+++
T Consensus 211 -----~~qR~~el~Ka~~dveV~~~~aEA~lAyelqaak~kq~i~~e~~qV~vVEr~kqvAv~eqEiqr~~~el~A~vR~ 285 (428)
T KOG2668|consen 211 -----SAQRTKELIKAATDVEVNTNKAEADLAYELQAAKTKQAIREEEIQVAVVERTKQVAVREQEIQRRVEELNATVRT 285 (428)
T ss_pred -----HhhhhHHHHHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334445555555555555555555555555544433322 2222 55677778888888888885
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 037578 308 ESKVQEANWELYQKQKEAEAILNLKIKEAEAKKATAEAEFYARKLAADGDLYAKQKEAEGQEALGKAQGEYLKSISTALG 387 (506)
Q Consensus 308 ~~~~~~AeA~~~~~~~~AeA~~~~~~~eAea~~~~AeA~~~~~~~~Aea~~~~~~aeAeai~~~g~AeAe~~~~~aeA~~ 387 (506)
||+|+.++.++.|||.+....++|+| +|+-++.+++|||-+|.+.+.|||+.++++++++.
T Consensus 286 -----paeAe~~r~~klaEAnk~~~~~qaqA--------------EA~~irk~geAEA~~ieA~akaeaeqm~~ka~v~~ 346 (428)
T KOG2668|consen 286 -----PAEAEVERETKLAEANKELYNKQAQA--------------EAELIRKQGEAEAFAIEADAKAEAEQMAAKAEVYQ 346 (428)
T ss_pred -----hhHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 89999999999999988776665543 44556667788888999999999999999999999
Q ss_pred CCHH-HHHHHHhHhhhhHHHHHHHHHHHhhccCCCcEEEeCCCCCCCCCCCCCCCCchHHHHHHHHhhcchHHHHHHhhc
Q 037578 388 GDNR-AVKDFLMIDRGVYQEMGRINAEAVRGLQPKLNIWNTTNESGGGAGGGDASSSAVREVAGIYRALPPLFQTIYDQT 466 (506)
Q Consensus 388 ~~~~-A~~~~~~~~~~~lp~i~~~~a~~~~~i~~ki~i~~~g~~~g~~~~~g~g~~~~~~~v~~~~~~lp~~~~~i~~~t 466 (506)
.+++ ++.. ++|+. ||.|+..++.||.+. +||++|++|||.+ |++++|+.|.+++.+|||+++.|...+
T Consensus 347 ~y~~aa~l~-~lLea--lp~Ia~~ia~plakt-nkI~v~s~g~~~~-------g~~k~t~dV~~l~~~LP~~v~~ltgv~ 415 (428)
T KOG2668|consen 347 AYAQAAYLR-TLLEA--LPMIAAEIAAPLAKT-NKISVWSHGGGQM-------GNAKVTGDVAGLYKMLPPSVDTLTGVD 415 (428)
T ss_pred HhhhhHHHH-HHHHH--HHHHHHHhccchhhc-CeEEEEecCCccc-------cchhhHHHHHHHHHhCcHHHhhhcccc
Confidence 9887 4553 67786 999999999999998 9999999876531 447899999999999999988765555
Q ss_pred CCCchhhhcCC
Q 037578 467 GMTPPPYMGML 477 (506)
Q Consensus 467 Gidl~~~l~~~ 477 (506)
|..+|.|++++
T Consensus 416 ~sq~p~~~~~~ 426 (428)
T KOG2668|consen 416 GSQPPAWIGTL 426 (428)
T ss_pred cccCccccccc
Confidence 55556555544
No 2
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=1.9e-47 Score=403.39 Aligned_cols=461 Identities=21% Similarity=0.245 Sum_probs=311.5
Q ss_pred cEEEecCCeEEEEEc---------cCCCceeecCcEEEecC-ceeeEEEeeeeeeeccc-ceecCCCcEEEEeEEEEEec
Q 037578 2 YYKVAGASQFLAITG---------SGIDDVKLAKKAFIWPF-QQCTVFDITPVNYDFEV-QAMSAEKLEFKLPAVFTIGP 70 (506)
Q Consensus 2 ~y~~~~p~ealVvtg---------~g~~rvv~gG~~fviP~-q~v~~vslr~~~i~~~~-~~~T~D~v~v~V~av~~v~v 70 (506)
+|++|+|+++||++| .++.+|+.|||||++|+ |...++||+++.+++.. .++|+|++|++++++|+++|
T Consensus 34 ~y~~a~~~~aLI~~g~~~g~~~~~g~~~~vV~gGg~~v~Pi~q~~~r~~l~~i~l~v~~~~v~t~Dg~p~~v~~~a~v~i 113 (548)
T COG2268 34 FYIIARPNEALIRTGSKLGSKDEAGGGQKVVRGGGAIVMPIFQTIERMSLTTIKLEVEIDNVYTKDGMPLNVEAVAYVKI 113 (548)
T ss_pred eEEecCCCceEEEeccccCCcccccCCccEEecCceEEecceeeeEEeeeeeeeeeeeeeeeEecCCCccceeEEEEEEe
Confidence 799999999999999 34579999999999997 99999999999888774 48999999999999999999
Q ss_pred CCCCHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhhhhccHHHHHhcHHHHHHHHHHHHHHHHhhccceeeeeee
Q 037578 71 REDDSDSLLRYAKLIAPKDRNSVHVREIVKGIIEGETRVLAASMTMEEVFKGTKQFKQEVFGKVQLELNQFGLVIYNANI 150 (506)
Q Consensus 71 ~~~d~~~i~~aa~~~~~~~~~~~~i~~~v~~~leg~lR~iig~mtleei~~~R~~f~~~V~~~~~~dl~~~Gl~I~sv~I 150 (506)
. ++...+.+++++|++.| +++++...+.++++|+||.++++||+++|+.+|..|...|.+.+..||.++||.|+++.|
T Consensus 114 ~-~~~~dI~~aae~~g~Kg-~~~~l~~~~~~~l~~~lR~i~a~~t~~el~edR~~F~~~V~~~v~~dL~k~Gl~l~s~~I 191 (548)
T COG2268 114 G-DTFQDIATAAERFGGKG-SREDLEQLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSKMGLVLDSLAI 191 (548)
T ss_pred c-CCHHHHHHHHHHhcccc-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHhhHHhhHHHHHHHHHHHHHHhcCeeeeeeee
Confidence 7 79999999999998754 778999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCC-----CchHHHHhhhhhhhHHHhHhHHHHHHHHhhhhHHHHHHhhhhhHHHHHHH--HH--HHHHHHHHhhhh
Q 037578 151 KQLVDVP-----GHEYFSYLGQKTQMEAANQAKVDVAEARMKGEVGAKLREGQTLQNAAKID--AE--TKVVKIQREGQG 221 (506)
Q Consensus 151 kdI~d~~-----g~~y~~alg~~~~A~~~~~A~i~~Aeaer~~~i~~aeae~~~~~~~Ak~~--~e--~~Ia~a~~~~~~ 221 (506)
+||.|++ +++||+++|.+.+++..+++.+.++|++++..|..+++..+. ..++.. +. ..-+....+.++
T Consensus 192 ~~i~d~~~~~~d~~~yLda~G~r~i~qv~~~a~ia~~E~~~~t~i~i~~a~~~a--~~~e~~v~~q~~~~~a~~~~~~ki 269 (548)
T COG2268 192 NDINDTSKENQDPNNYLDALGRRRIAQVLQDAEIAENEAEKETEIAIAEANRDA--KLVELEVEQQPAGKTAEQTREVKI 269 (548)
T ss_pred cccccccccccChhhhhhhcChHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhHH--HHHhhhhhcccccchhhhhhhhhh
Confidence 9999991 135999999999999999999999999999888777654433 222222 11 000111111222
Q ss_pred hHHHHhhhhhHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--HHH----HHHHHH
Q 037578 222 QKEEMRVKTEVKVFENQREAEVAEANADLAKKKAGWAKEAKVA--EVESAKAVALRDAELQREVE--KMN----AATRME 293 (506)
Q Consensus 222 ~~ae~~~~~~i~~a~~~~e~~~A~a~a~~~~~~a~~~~e~~~a--~a~a~~a~~~~~~~~q~ev~--~~~----~~~~~~ 293 (506)
..++.+.......++.+++.+.|+..++.++.....+.++++. .+..+...++...+.+++.+ .+. ....+.
T Consensus 270 ~~a~~e~e~~~~~ae~~~~a~~a~~~Aeq~~~~~~~~~e~ev~~~~~~e~~~~rv~~i~r~~e~el~~~~~~~~~~~~q~ 349 (548)
T COG2268 270 ILAETEAEVAAWKAETRREAEQAEILAEQAIQEEKAQAEQEVQHAKALEAREMRVGLIERQKETELEPQERSYFINAAQR 349 (548)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 3334444444555666667777777777776554444444443 22222122222222232222 111 000111
Q ss_pred HHHHHHhhhhh-hhHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 037578 294 KLRAEFVSKAN-VEYESKVQEANWE-LYQKQKEAEAILNLKIKEAEA---KKATAEAEFYARKLAADGDLYAKQKEAEGQ 368 (506)
Q Consensus 294 ~l~~e~~~~A~-~~~~~~~~~AeA~-~~~~~~~AeA~~~~~~~eAea---~~~~AeA~~~~~~~~Aea~~~~~~aeAeai 368 (506)
.+..+....++ +.++..++++... ..+......++++....-+++ .+.+-+...-+.+++|++...++.++|+++
T Consensus 350 ~~~~~~~a~an~~~~~~~~~~~~~~~a~e~~~~~~aeq~~~~~~aea~eqe~v~i~~~~e~~~aea~a~~a~~~~~Aea~ 429 (548)
T COG2268 350 QAQEEAKAAANIAEAIGAQAEAAVETARETEEAERAEQAALVAAAEAAEQEQVEIAVRAEAAKAEAEAQAAEIKAEAEAI 429 (548)
T ss_pred HhHHHHHHHhhhHhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHH
Confidence 11111111121 1111111111100 011111111222222211111 111111222334567888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHH--HHHH-HhHhhhhHHHHHHHHHHHhhccCCCcEEEeCCCCCCCCCCCCCCCCchH
Q 037578 369 EALGKAQGEYLKSISTALGGDNRA--VKDF-LMIDRGVYQEMGRINAEAVRGLQPKLNIWNTTNESGGGAGGGDASSSAV 445 (506)
Q Consensus 369 ~~~g~AeAe~~~~~aeA~~~~~~A--~~~~-~~~~~~~lp~i~~~~a~~~~~i~~ki~i~~~g~~~g~~~~~g~g~~~~~ 445 (506)
+.+|+|||+++++++|+++..+.+ ...| ++++ +||.+++..++|+++| |+++|++.|+++|++ ..|++.
T Consensus 430 r~kG~AEAea~r~lAEa~~~~~~a~~a~~~~~~vq--~Lp~~~~~~~~~~~~i-~~~kV~~i~~~~~~s-----t~g~v~ 501 (548)
T COG2268 430 REKGKAEAEAKRALAEAIQVLGDAAAAELFKALVQ--ALPEVAEEAAQPMKNI-DSEKVRVIGGANGGS-----TAGKVN 501 (548)
T ss_pred HHhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHhhcccccc-cceeEEecCCccccc-----cccchh
Confidence 999999999999999999986654 2223 3455 4999999999999999 999999987764332 122333
Q ss_pred HHHHHHHhhcchHHHHHHhhcCCCchhhhcC
Q 037578 446 REVAGIYRALPPLFQTIYDQTGMTPPPYMGM 476 (506)
Q Consensus 446 ~~v~~~~~~lp~~~~~i~~~tGidl~~~l~~ 476 (506)
.+..+ ..+..+.+.++.+||+|+.+.+.+
T Consensus 502 a~~~~--~~l~~l~~~~~~t~gvd~~~~l~~ 530 (548)
T COG2268 502 AGGLG--LLLMALLEALKKTTGVDVAESLLN 530 (548)
T ss_pred ccchH--HHHHHHHHHhhccCCCChHhhcCC
Confidence 22222 223357788889999999998866
No 3
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=99.96 E-value=9.8e-28 Score=236.64 Aligned_cols=201 Identities=16% Similarity=0.128 Sum_probs=170.5
Q ss_pred EEEecCCeEEEEEccCCC-c-eeecCcEEEecC-ceeeEEEeeeeeeecccc-eecCCCcEEEEeEEEEEecCCCCHHHH
Q 037578 3 YKVAGASQFLAITGSGID-D-VKLAKKAFIWPF-QQCTVFDITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGPREDDSDSL 78 (506)
Q Consensus 3 y~~~~p~ealVvtg~g~~-r-vv~gG~~fviP~-q~v~~vslr~~~i~~~~~-~~T~D~v~v~V~av~~v~v~~~d~~~i 78 (506)
+++|+|+++.|+++||+. + ++.||+||+||| +++.++|++.++++++.. ++|+|+++|+|+++++|+| .||..+
T Consensus 1 ~~iV~~ge~~Vv~~~Gk~~~~~~~pG~~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI--~d~~~~ 78 (242)
T cd03405 1 LFIVDEGEQAVVLRFGEVVRVVTEPGLHFKLPFIQQVKKFDKRILTLDSDPQRVLTKDKKRLIVDAYAKWRI--TDPLRF 78 (242)
T ss_pred CEEeCCCeEEEEEEcCccccccCCCCeeEEcCCcceEEEEcCEEEeccCCcceEEccCCcEEEEEEEEEEEE--cCHHHH
Confidence 579999999999999984 4 578999999999 999999999998877655 8999999999999999999 488655
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhhhhccHHHHHhc-HHHHHHHHHHHHHHHHhhccceeeeeeecccccCC
Q 037578 79 LRYAKLIAPKDRNSVHVREIVKGIIEGETRVLAASMTMEEVFKG-TKQFKQEVFGKVQLELNQFGLVIYNANIKQLVDVP 157 (506)
Q Consensus 79 ~~aa~~~~~~~~~~~~i~~~v~~~leg~lR~iig~mtleei~~~-R~~f~~~V~~~~~~dl~~~Gl~I~sv~IkdI~d~~ 157 (506)
+ ..+++ +.+.+...+.+.+.+.+|+++|+|++++++++ |+.|...+.+.+.++|.+|||.|.+|+|++|++|+
T Consensus 79 ~---~~~~~---~~~~~~~~i~~~~~~~lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~ 152 (242)
T cd03405 79 Y---QAVGG---EERAAETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPE 152 (242)
T ss_pred H---HHhcC---hHHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEeccCCH
Confidence 4 23432 33445688899999999999999999999997 99999999999999999999999999999999998
Q ss_pred CchHHHHhhhhhhhHHHhHhHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHH
Q 037578 158 GHEYFSYLGQKTQMEAANQAKVDVAEARMKGEVGAKLREGQTLQNAAKIDAETKVV 213 (506)
Q Consensus 158 g~~y~~alg~~~~A~~~~~A~i~~Aeaer~~~i~~aeae~~~~~~~Ak~~~e~~Ia 213 (506)
. +.++|..+..+++++.+....|++++++.+..++++++.....|+..++..+.
T Consensus 153 ~--i~~ai~~~~~ae~~~~a~~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~ 206 (242)
T cd03405 153 E--VSESVYRRMRAERERIAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEI 206 (242)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 99999999999999999998999888777766666655555555555554444
No 4
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.96 E-value=1.9e-27 Score=237.64 Aligned_cols=186 Identities=13% Similarity=0.160 Sum_probs=159.3
Q ss_pred CCeEEEEEccCC-CceeecCcEEEecC-cee-eEEEeeeeeeecccceecCCCcEEEEeEEEEEecCCCCHHHHHHHHHh
Q 037578 8 ASQFLAITGSGI-DDVKLAKKAFIWPF-QQC-TVFDITPVNYDFEVQAMSAEKLEFKLPAVFTIGPREDDSDSLLRYAKL 84 (506)
Q Consensus 8 p~ealVvtg~g~-~rvv~gG~~fviP~-q~v-~~vslr~~~i~~~~~~~T~D~v~v~V~av~~v~v~~~d~~~i~~aa~~ 84 (506)
+++..||+.||+ .+++.||+||+||| +++ ..+|++.++++++.+++|+|+++|+|+++++|+|. ||. ..++..+
T Consensus 1 q~~~~Vv~rfGk~~~~l~pGlhf~~P~i~~v~~~~~~r~~~~~~~~~~lTkD~~~V~vd~~v~yrI~--d~~-~~~~~~~ 77 (262)
T cd03407 1 QSQVAIIERFGKFFKVAWPGCHFVIPLVETVAGRLSLRVQQLDVRVETKTKDNVFVTVVGQIQYRVS--EEN-ATDAFYK 77 (262)
T ss_pred CcEEEEEeecCcccccCCCCeEEEeccccceeeEEeeeEEEecCCCceEcCCCCEEEEEEEEEEEEC--CcH-HHHHHHH
Confidence 468899999997 57889999999998 887 48999999998888899999999999999999994 554 2333445
Q ss_pred hccCCCCHHHHHHHHHHHHHHHHHHhhhhccHHHHHhcHHHHHHHHHHHHHHHHhhccceeeeeeecccccCCCchHHHH
Q 037578 85 IAPKDRNSVHVREIVKGIIEGETRVLAASMTMEEVFKGTKQFKQEVFGKVQLELNQFGLVIYNANIKQLVDVPGHEYFSY 164 (506)
Q Consensus 85 ~~~~~~~~~~i~~~v~~~leg~lR~iig~mtleei~~~R~~f~~~V~~~~~~dl~~~Gl~I~sv~IkdI~d~~g~~y~~a 164 (506)
+. ++ ...+.+++++.||+++|+|++++++++|+.|+..|.+.+...+.+|||.|++|+|++|++|+. +.++
T Consensus 78 ~~----~~---~~~l~~~~~s~lR~vig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~--v~~A 148 (262)
T cd03407 78 LG----NP---EEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAE--VKRA 148 (262)
T ss_pred cC----CH---HHHHHHHHHHHHHHHhcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHH--HHHH
Confidence 53 22 247778888999999999999999999999999999999999999999999999999999985 9999
Q ss_pred hhhhhhhHHHhHhHHHHHHHHhhhhHHHHHHhhhhhHHHHH
Q 037578 165 LGQKTQMEAANQAKVDVAEARMKGEVGAKLREGQTLQNAAK 205 (506)
Q Consensus 165 lg~~~~A~~~~~A~i~~Aeaer~~~i~~aeae~~~~~~~Ak 205 (506)
|.....|++.+++.+.+|++++...+..|++++++....|+
T Consensus 149 ~~~~~~A~~~~~a~~~~Aea~~~~~i~~A~~ea~a~~~~Ae 189 (262)
T cd03407 149 MNEINAAQRQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGV 189 (262)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999988777777666544433333
No 5
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=99.95 E-value=2.2e-26 Score=235.84 Aligned_cols=195 Identities=14% Similarity=0.128 Sum_probs=160.9
Q ss_pred cEEEecCCeEEEEEccCCC-c-------eeecCcEEEecC-ceeeEEEeeeeeeecccc-eecCCCcEEEEeEEEEEecC
Q 037578 2 YYKVAGASQFLAITGSGID-D-------VKLAKKAFIWPF-QQCTVFDITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGPR 71 (506)
Q Consensus 2 ~y~~~~p~ealVvtg~g~~-r-------vv~gG~~fviP~-q~v~~vslr~~~i~~~~~-~~T~D~v~v~V~av~~v~v~ 71 (506)
+|++|+|+++.||++||+. + ++.||+||+||| +++.++|++.+.++++.. ++|+|+++|+|+++++|+|.
T Consensus 19 ~~~iV~~ge~gVv~~fGk~~~~~~~~~~v~~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~vlTkD~~~V~Vd~~V~yrV~ 98 (317)
T TIGR01932 19 PFFIIKEGERGIITRFGKILKDNNHHVLVYEPGLHFKIPFIEHVKIFDAKIQTMDGRPDRIPTKEKKDIIIDTYIRWRIE 98 (317)
T ss_pred eEEEECCCeEEEEEecCceeccccccccccCCCeEEEeccccEEEEeeeeEEEecCCcceeECCCCCEEEEEEEEEEEEC
Confidence 6899999999999999974 2 347999999998 999999999998887765 89999999999999999994
Q ss_pred CCCHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhhhhccHHHHHhc-HHHH------------------------
Q 037578 72 EDDSDSLLRYAKLIAPKDRNSVHVREIVKGIIEGETRVLAASMTMEEVFKG-TKQF------------------------ 126 (506)
Q Consensus 72 ~~d~~~i~~aa~~~~~~~~~~~~i~~~v~~~leg~lR~iig~mtleei~~~-R~~f------------------------ 126 (506)
||..++ ..+++ .+.+.....+.+.++++||+++|++|+++++++ |+.+
T Consensus 99 --d~~~~~---~~~~~--~~~~~~~~~l~~~~~~~lR~vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~ 171 (317)
T TIGR01932 99 --DFKKYY---LSTGG--GTISAAEVLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKINKIAMTITK 171 (317)
T ss_pred --CHHHHH---HHhcC--CCHHHHHHHHHHHHHHHHHHHHccCcHHHHHhcchHHhhhhhchhhccccccccccccccch
Confidence 776554 23321 234556778899999999999999999999974 5555
Q ss_pred -----HHHHHHHHHHHHhhccceeeeeeecccccCCCchHHHHhhhhhhhHHHhHhHHHHHHHHhhhhHHHHHHhhhhhH
Q 037578 127 -----KQEVFGKVQLELNQFGLVIYNANIKQLVDVPGHEYFSYLGQKTQMEAANQAKVDVAEARMKGEVGAKLREGQTLQ 201 (506)
Q Consensus 127 -----~~~V~~~~~~dl~~~Gl~I~sv~IkdI~d~~g~~y~~alg~~~~A~~~~~A~i~~Aeaer~~~i~~aeae~~~~~ 201 (506)
...+++.+...+.+|||.|.+|.|++|++|+. +.++|..+..+++++.|...++++++.+....++++++...
T Consensus 172 ~r~~l~~~i~~~~~~~~~~~Gi~V~~V~I~~i~~p~~--v~~Ai~~~~~aere~~a~~~r~ege~~a~~i~a~A~~e~~~ 249 (317)
T TIGR01932 172 GREILAREISQIANSQLKDIGIEVVDVRIKKINYSDE--LSESIYNRMRSEREQIARMHRSQGEEKAEEILGKAEYEVRK 249 (317)
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEEEEEEecCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66888889999999999999999999999985 99999999999999998888888887766655555544433
Q ss_pred HHHH
Q 037578 202 NAAK 205 (506)
Q Consensus 202 ~~Ak 205 (506)
..++
T Consensus 250 ~~ae 253 (317)
T TIGR01932 250 ILSE 253 (317)
T ss_pred HHHH
Confidence 3333
No 6
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=99.95 E-value=5.9e-26 Score=232.64 Aligned_cols=204 Identities=11% Similarity=0.114 Sum_probs=170.9
Q ss_pred CcEEEecCCeEEEEEccCCC-c-------eeecCcEEEecC-ceeeEEEeeeeeeecccc-eecCCCcEEEEeEEEEEec
Q 037578 1 MYYKVAGASQFLAITGSGID-D-------VKLAKKAFIWPF-QQCTVFDITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGP 70 (506)
Q Consensus 1 ~~y~~~~p~ealVvtg~g~~-r-------vv~gG~~fviP~-q~v~~vslr~~~i~~~~~-~~T~D~v~v~V~av~~v~v 70 (506)
++|++|+|++..||+.||+. + ++.||+||+||| +++.++|++.+.++++.+ ++|+|+++|+||++++|+|
T Consensus 18 ~s~~iV~ege~gVV~rFGk~~~~~~~~~~~l~PGLhf~iPfid~V~~vdvR~q~~d~~~~~vlT~D~~~V~VD~~V~yrI 97 (334)
T PRK11029 18 MSVFVVKEGERGIVLRFGKVLRDDDNKPLVYAPGLHFKIPFIETVKMLDARIQTMDNQADRFVTKEKKDLIVDSYIKWRI 97 (334)
T ss_pred heEEEECCCeEEEEEECCceeccccccccccCCceEEEcCCceEEEEEeeEEEEeeCCCceEEcCCCCEEEEEEEEEEEE
Confidence 36899999999999999974 3 478999999999 999999999999988876 8999999999999999999
Q ss_pred CCCCHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhhhhccHHHHHh-cHHHHHHHHHHHHHHH------------
Q 037578 71 REDDSDSLLRYAKLIAPKDRNSVHVREIVKGIIEGETRVLAASMTMEEVFK-GTKQFKQEVFGKVQLE------------ 137 (506)
Q Consensus 71 ~~~d~~~i~~aa~~~~~~~~~~~~i~~~v~~~leg~lR~iig~mtleei~~-~R~~f~~~V~~~~~~d------------ 137 (506)
.||..++.. +++ .+.......+.+.+.+.||+++|+||++++++ +|..+...+++.++..
T Consensus 98 --~Dp~~~~~~---~~~--~n~~~a~~~l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~~~~~~~~~~ 170 (334)
T PRK11029 98 --SDFSRYYLA---TGG--GDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTEDEVATPA 170 (334)
T ss_pred --CCHHHHHHH---hcC--CcHHHHHHHHHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhcccccccccc
Confidence 488766532 221 13455667888889999999999999999997 6999999999998853
Q ss_pred ---------------------------HhhccceeeeeeecccccCCCchHHHHhhhhhhhHHHhHhHHHHHHHHhhhhH
Q 037578 138 ---------------------------LNQFGLVIYNANIKQLVDVPGHEYFSYLGQKTQMEAANQAKVDVAEARMKGEV 190 (506)
Q Consensus 138 ---------------------------l~~~Gl~I~sv~IkdI~d~~g~~y~~alg~~~~A~~~~~A~i~~Aeaer~~~i 190 (506)
+.+|||+|.+|+|++|++|+. +.++|...+.|++.+.|...+|++++++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V~i~~i~~P~~--v~~ai~~~~~Aere~~a~~~~aege~~a~~ 248 (334)
T PRK11029 171 ADDAIASAAERVEAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTE--VSDAIYNRMRAEREAVARRHRSQGQEEAEK 248 (334)
T ss_pred cccccccchhhcccccccccccccccccccCCcEEEEEEEEecCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999985 999999999999999999999999988887
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHH
Q 037578 191 GAKLREGQTLQNAAKIDAETKVV 213 (506)
Q Consensus 191 ~~aeae~~~~~~~Ak~~~e~~Ia 213 (506)
..++++.+.....|++.++..|.
T Consensus 249 ~~a~A~~e~~~~~AeA~~~a~i~ 271 (334)
T PRK11029 249 LRATADYEVTRTLAEAERQGRIM 271 (334)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Confidence 77666655444444444444443
No 7
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=99.94 E-value=8.1e-26 Score=225.70 Aligned_cols=196 Identities=11% Similarity=0.146 Sum_probs=161.7
Q ss_pred EEEecCCeEEEEEccCC-CceeecCcEEEecC-ceeeEEEeeeeeeeccc--ceecCCCcEEEEeEEEEEecCCCCHHHH
Q 037578 3 YKVAGASQFLAITGSGI-DDVKLAKKAFIWPF-QQCTVFDITPVNYDFEV--QAMSAEKLEFKLPAVFTIGPREDDSDSL 78 (506)
Q Consensus 3 y~~~~p~ealVvtg~g~-~rvv~gG~~fviP~-q~v~~vslr~~~i~~~~--~~~T~D~v~v~V~av~~v~v~~~d~~~i 78 (506)
+++|+|++..||++||+ .+++.||+||+||| +++.++|++.+. .+.. .++|+|+++|+|+++++|+| .||..+
T Consensus 1 ~~iV~~ge~~Vv~~fGk~~~~l~pGl~~~~P~i~~v~~~~~~~~~-~~~~~~~v~T~D~~~v~vd~~v~yrI--~d~~~~ 77 (261)
T TIGR01933 1 IYTIGEAERGVVLRFGKYHRTVDPGLNWKPPFIEEVYPVNVTAVR-NLRKQGLMLTGDENIVNVEMNVQYRI--TDPYKY 77 (261)
T ss_pred CEEeCCCeEEEEEEcCccccccCCcceEECCCceEEEEeeeEEEE-ecCCcCeEEeCCCCEEEEEEEEEEEE--CCHHHH
Confidence 57899999999999997 46889999999999 999999997654 3333 37999999999999999999 488644
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhhhhccHHHHHh-cHHHHHHHHHHHHHHHHhhc--cceeeeeeeccccc
Q 037578 79 LRYAKLIAPKDRNSVHVREIVKGIIEGETRVLAASMTMEEVFK-GTKQFKQEVFGKVQLELNQF--GLVIYNANIKQLVD 155 (506)
Q Consensus 79 ~~aa~~~~~~~~~~~~i~~~v~~~leg~lR~iig~mtleei~~-~R~~f~~~V~~~~~~dl~~~--Gl~I~sv~IkdI~d 155 (506)
+ .+. +.....+.+.+.+.||+++|+||++++++ +|+.|...|.+.+...+..| ||.|.+|.|++|++
T Consensus 78 ~---~~~-------~~~~~~l~~~~~s~lR~vig~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~ 147 (261)
T TIGR01933 78 L---FSV-------ENPEDSLRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARP 147 (261)
T ss_pred H---HhC-------CCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCC
Confidence 2 121 22446788889999999999999999998 89999999999999999966 99999999999999
Q ss_pred CCCchHHHHhhhhhhhHHHhHhHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHH
Q 037578 156 VPGHEYFSYLGQKTQMEAANQAKVDVAEARMKGEVGAKLREGQTLQNAAKIDAETKVV 213 (506)
Q Consensus 156 ~~g~~y~~alg~~~~A~~~~~A~i~~Aeaer~~~i~~aeae~~~~~~~Ak~~~e~~Ia 213 (506)
|+. +.++|.....++..+++.+.+|++++...+..|++++++....|+..++..+.
T Consensus 148 p~~--v~~a~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~ 203 (261)
T TIGR01933 148 PEE--VKEAFDDVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRIN 203 (261)
T ss_pred CHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 985 99999999999888888888888887777777776665554455544444444
No 8
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=99.94 E-value=8.4e-26 Score=215.83 Aligned_cols=164 Identities=14% Similarity=0.158 Sum_probs=138.7
Q ss_pred cEEEecCCeEEEEEccCCC---ceeecCcEEEecC-ceeeEEEeeeeeeecccceecCCCcEEEEeEEEEEecCCCCHHH
Q 037578 2 YYKVAGASQFLAITGSGID---DVKLAKKAFIWPF-QQCTVFDITPVNYDFEVQAMSAEKLEFKLPAVFTIGPREDDSDS 77 (506)
Q Consensus 2 ~y~~~~p~ealVvtg~g~~---rvv~gG~~fviP~-q~v~~vslr~~~i~~~~~~~T~D~v~v~V~av~~v~v~~~d~~~ 77 (506)
+|++++|+++.||+.||+. +++.||+||+||| +++..+|++.+.++++..+.|+|+++|+++.+++|++. ++.
T Consensus 1 ~~~~V~~g~~gVv~~~g~~~~~~~~~pG~h~~~P~~~~v~~~~~r~~~~~~~~~~~t~d~~~V~v~~~v~y~v~---~~~ 77 (196)
T cd03401 1 SLYNVDGGHRAVLFNRGGGVKDLVYGEGLHFRIPWFQKPIIFDVRARPRNIESTTGSKDLQMVNITLRVLFRPD---ASQ 77 (196)
T ss_pred CEEEECCCcEEEEEEecCccccCccCCceEEEccccceeEEEEeeeeEEEEeecccCCCCeEEEEEEEEEEEeC---HHH
Confidence 4789999999999988862 3789999999999 99999999999888877789999999999999999983 332
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhhhhccHHHHHhcHHHHHHHHHHHHHHHHhhccceeeeeeecccccCC
Q 037578 78 LLRYAKLIAPKDRNSVHVREIVKGIIEGETRVLAASMTMEEVFKGTKQFKQEVFGKVQLELNQFGLVIYNANIKQLVDVP 157 (506)
Q Consensus 78 i~~aa~~~~~~~~~~~~i~~~v~~~leg~lR~iig~mtleei~~~R~~f~~~V~~~~~~dl~~~Gl~I~sv~IkdI~d~~ 157 (506)
.......|+ . +....++.+.+...||+++|+||++||+++|+.|...|.+.+..+|.+|||.|.++.|+||++|+
T Consensus 78 ~~~~~~~~~---~--~~~~~~i~~~v~~~lR~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~ 152 (196)
T cd03401 78 LPRIYQNLG---E--DYDERVLPSIINEVLKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSK 152 (196)
T ss_pred HHHHHHHhC---c--chHhhhhcHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEEEEEEeccCCH
Confidence 222223342 1 22345677788899999999999999999999999999999999999999999999999999998
Q ss_pred CchHHHHhhhhhhhHHHh
Q 037578 158 GHEYFSYLGQKTQMEAAN 175 (506)
Q Consensus 158 g~~y~~alg~~~~A~~~~ 175 (506)
+ |.++|+.+.+++...
T Consensus 153 ~--~~~ai~~k~~a~q~~ 168 (196)
T cd03401 153 E--FTKAVEAKQVAQQEA 168 (196)
T ss_pred H--HHHHHHHHHHHHHHH
Confidence 6 999998777666543
No 9
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=99.94 E-value=1.2e-25 Score=225.05 Aligned_cols=202 Identities=12% Similarity=0.100 Sum_probs=160.7
Q ss_pred CcEEEecCCeEEEEEccCCC-ceeecCcEEEecC-ceeeEE-Eee----------eeeeec--cc-ceecCCCcEEEEeE
Q 037578 1 MYYKVAGASQFLAITGSGID-DVKLAKKAFIWPF-QQCTVF-DIT----------PVNYDF--EV-QAMSAEKLEFKLPA 64 (506)
Q Consensus 1 ~~y~~~~p~ealVvtg~g~~-rvv~gG~~fviP~-q~v~~v-slr----------~~~i~~--~~-~~~T~D~v~v~V~a 64 (506)
++|++|+|+++.||++||+. +++.||+||+||| +++.++ +++ ...... +. .++|+|+++|+|++
T Consensus 13 ~s~~~V~~ge~gVV~~fGk~~~~~~pGlh~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~T~D~~~v~vd~ 92 (266)
T cd03404 13 SGFYIVQPGERGVVLRFGKYSRTVEPGLHWKLPYPIEVVEVVPVFQLRSVGIPVRVGSVRSVPGESLMLTGDENIVDVEF 92 (266)
T ss_pred cEEEEECCCceEEeEEcCccccccCCceeEecCCCcEEEEEecceeEEeeccccccccccCCCcccceEeCCCCEEEEEE
Confidence 36899999999999999974 6778999999999 776443 332 111111 12 37999999999999
Q ss_pred EEEEecCCCCHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhhhhccHHHHHhc-HHHHHHHHHHHHHHHHhhc--
Q 037578 65 VFTIGPREDDSDSLLRYAKLIAPKDRNSVHVREIVKGIIEGETRVLAASMTMEEVFKG-TKQFKQEVFGKVQLELNQF-- 141 (506)
Q Consensus 65 v~~v~v~~~d~~~i~~aa~~~~~~~~~~~~i~~~v~~~leg~lR~iig~mtleei~~~-R~~f~~~V~~~~~~dl~~~-- 141 (506)
+++|+| .||..++ ..+ .+ ....+.+.+.++||+++|+||+++++++ |+.|...|++.+...+..|
T Consensus 93 ~v~yrI--~d~~~~~---~~~----~~---~~~~l~~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~~~~~~ 160 (266)
T cd03404 93 AVQYRI--SDPYDYL---FNV----RD---PEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYKA 160 (266)
T ss_pred EEEEEE--CCHHHHH---hhC----CC---HHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHhhccCC
Confidence 999999 4776432 222 12 3357888899999999999999999997 9999999999999999976
Q ss_pred cceeeeeeecccccCCCchHHHHhhhhhhhHHHhHhHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 037578 142 GLVIYNANIKQLVDVPGHEYFSYLGQKTQMEAANQAKVDVAEARMKGEVGAKLREGQTLQNAAKIDAETKVVKIQ 216 (506)
Q Consensus 142 Gl~I~sv~IkdI~d~~g~~y~~alg~~~~A~~~~~A~i~~Aeaer~~~i~~aeae~~~~~~~Ak~~~e~~Ia~a~ 216 (506)
|+.|.+|.|++|++|++ +.++|.....++..+++.+..|+++++..+..|++++++....|+..++..++.++
T Consensus 161 Gi~v~~v~i~~i~~p~~--i~~a~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae 233 (266)
T cd03404 161 GIEIVGVNLQDADPPEE--VQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQ 233 (266)
T ss_pred CeEEEEEEEEeCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999986 99999999999999888888888887777777777766665555555555555333
No 10
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=99.94 E-value=1.3e-25 Score=217.51 Aligned_cols=178 Identities=13% Similarity=0.166 Sum_probs=157.3
Q ss_pred ecCCeEEEEEccCC-CceeecCcEEEecC-cee-eEEEeeeeeeecccc-eecCCCcEEEEeEEEEEecCCCCHHHHHHH
Q 037578 6 AGASQFLAITGSGI-DDVKLAKKAFIWPF-QQC-TVFDITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGPREDDSDSLLRY 81 (506)
Q Consensus 6 ~~p~ealVvtg~g~-~rvv~gG~~fviP~-q~v-~~vslr~~~i~~~~~-~~T~D~v~v~V~av~~v~v~~~d~~~i~~a 81 (506)
|+|+++.|++.||+ .+++.||+||+||| +++ .++|++.++++++.. ++|+|+++|.++++++|+| .||..++
T Consensus 1 V~~ge~~Vv~~~G~~~~~~~pG~~f~~P~~~~v~~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI--~d~~~~~-- 76 (215)
T cd03403 1 VPQYERGVVERLGKYHRTLGPGLHFIIPFIDRIAYKVDLREQVLDVPPQEVITKDNVTVRVDAVLYYRV--VDPVKAV-- 76 (215)
T ss_pred CCcceEEEEEEcCcCccccCCcEEEEeccceEEEEEEeeEEEEEccCCceeEcCCCCEEEEEEEEEEEE--ecHHHHH--
Confidence 68999999999997 45678999999999 998 999999999888765 8999999999999999999 4886543
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHHHHHHhhhhccHHHHHhcHHHHHHHHHHHHHHHHhhccceeeeeeecccccCCCchH
Q 037578 82 AKLIAPKDRNSVHVREIVKGIIEGETRVLAASMTMEEVFKGTKQFKQEVFGKVQLELNQFGLVIYNANIKQLVDVPGHEY 161 (506)
Q Consensus 82 a~~~~~~~~~~~~i~~~v~~~leg~lR~iig~mtleei~~~R~~f~~~V~~~~~~dl~~~Gl~I~sv~IkdI~d~~g~~y 161 (506)
..+ +.....+.+.+++.||+++|+|++++++++|+.|...|++.+..++.+|||.|++|.|++|++|+. |
T Consensus 77 -~~~-------~~~~~~l~~~~~~~lr~~i~~~~~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~~--~ 146 (215)
T cd03403 77 -YGV-------EDYRYAISQLAQTTLRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQE--I 146 (215)
T ss_pred -hcC-------CCHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHHhccCeEEEEEEEeeecCCHH--H
Confidence 222 123456778889999999999999999999999999999999999999999999999999999985 9
Q ss_pred HHHhhhhhhhHHHhHhHHHHHHHHhhhhHHHHHHhh
Q 037578 162 FSYLGQKTQMEAANQAKVDVAEARMKGEVGAKLREG 197 (506)
Q Consensus 162 ~~alg~~~~A~~~~~A~i~~Aeaer~~~i~~aeae~ 197 (506)
.++|.....|++.++|.+..|++++++.+..+++..
T Consensus 147 ~~ai~~~~~A~~~~~a~i~~A~ge~~a~~~~aea~~ 182 (215)
T cd03403 147 QEAMAKQAEAEREKRAKIIEAEGERQAAILLAEAAK 182 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888776666654
No 11
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.93 E-value=6.8e-24 Score=212.56 Aligned_cols=185 Identities=13% Similarity=0.061 Sum_probs=156.9
Q ss_pred cEEEecCCeEEEEEccCCC--ceeecCcEEEecC-ceeeEEEeeeeeeecc-cceecCCCcEEEEeEEEEEecCCCCHHH
Q 037578 2 YYKVAGASQFLAITGSGID--DVKLAKKAFIWPF-QQCTVFDITPVNYDFE-VQAMSAEKLEFKLPAVFTIGPREDDSDS 77 (506)
Q Consensus 2 ~y~~~~p~ealVvtg~g~~--rvv~gG~~fviP~-q~v~~vslr~~~i~~~-~~~~T~D~v~v~V~av~~v~v~~~d~~~ 77 (506)
++++|+|++..||+.||+. .++.||+||+||| +++..++++.++++++ ..+.|+|++.|++|.+..|.+ .||..
T Consensus 4 sv~iV~ege~gVV~RfGkv~~~~l~PGLHfkiPfId~V~~v~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~i--vdp~~ 81 (280)
T cd03406 4 ALHKIEEGHVGVYYRGGALLTSTSGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNF--LIPDS 81 (280)
T ss_pred eEEEECCCeEEEEEECCcccccccCCceEEecCCceEEEEEEeEEEEeccCCcccccCCCcEEEEEEEEEEEe--cCHHH
Confidence 6899999999999999973 4668999999999 9998999999887764 448899999999996434443 38888
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhhhhccHHHHHh-cHHHHHHHHHHHHHHHHhhc--cceeeeeeecccc
Q 037578 78 LLRYAKLIAPKDRNSVHVREIVKGIIEGETRVLAASMTMEEVFK-GTKQFKQEVFGKVQLELNQF--GLVIYNANIKQLV 154 (506)
Q Consensus 78 i~~aa~~~~~~~~~~~~i~~~v~~~leg~lR~iig~mtleei~~-~R~~f~~~V~~~~~~dl~~~--Gl~I~sv~IkdI~ 154 (506)
++....+++ .+.+...+.+.+...+|.++|+++++++++ +|+.+...+++.+...|..| ||.|.+|.|++++
T Consensus 82 ~~~~~~~y~-----~~~~~~~I~~~Vrsavr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id 156 (280)
T cd03406 82 VYDIVKNYT-----ADYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPK 156 (280)
T ss_pred HHHHHHHHh-----HhhHHHHHHHHHHHHHHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecC
Confidence 887654453 245788999999999999999999999998 79999999999999999988 9999999999999
Q ss_pred cCCCchHHHHhhhhhhhHHHhH--------hHHHHHHHHhhhhHHHHHHh
Q 037578 155 DVPGHEYFSYLGQKTQMEAANQ--------AKVDVAEARMKGEVGAKLRE 196 (506)
Q Consensus 155 d~~g~~y~~alg~~~~A~~~~~--------A~i~~Aeaer~~~i~~aeae 196 (506)
+|+. +.++| ..+.+++.+. |.+..||++|...|.+|+++
T Consensus 157 ~P~~--V~~af-erM~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~~~ 203 (280)
T cd03406 157 IPEA--IRRNY-ELMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKV 203 (280)
T ss_pred CCHH--HHHHH-HHHHHHHHhhhhccchhHHHHHHhhHHHHHHHHHHHHH
Confidence 9985 88898 6888888888 88888888877777666554
No 12
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=99.92 E-value=8.2e-24 Score=222.47 Aligned_cols=198 Identities=9% Similarity=0.114 Sum_probs=166.1
Q ss_pred cEEEecCCeEEEEEccCC-CceeecCcEEEecC-ceeeEEEeeeeeeecccc-eecCCCcEEEEeEEEEEecCCCCHHHH
Q 037578 2 YYKVAGASQFLAITGSGI-DDVKLAKKAFIWPF-QQCTVFDITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGPREDDSDSL 78 (506)
Q Consensus 2 ~y~~~~p~ealVvtg~g~-~rvv~gG~~fviP~-q~v~~vslr~~~i~~~~~-~~T~D~v~v~V~av~~v~v~~~d~~~i 78 (506)
.|++|+|++..||+.||+ .+++.||+||++|| ++|.+++++.+....... .+|+|+..|+|+.+++|+| .||..+
T Consensus 96 g~yiV~e~E~gVV~rFGk~~~~l~PGLhfk~PfId~V~~vdv~~~~~~~~~~~mLT~D~n~V~Vd~~VqYrI--~Dp~~~ 173 (419)
T PRK10930 96 GFYTIKEAERGVVTRFGKFSHLVEPGLNWKPTFIDEVKPVNVEAVRELAASGVMLTSDENVVRVEMNVQYRV--TDPEKY 173 (419)
T ss_pred eEEEECCCeEEEEEECCcCcceeCCceEEecCceEEEEEEEeEEEEEccCcceeECCCCCEEEEEEEEEEEE--CCHHHH
Confidence 589999999999999998 46779999999998 999999998764332333 8999999999999999999 488654
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhhhhccHHHHHh-cHHHHHHHHHHHHHHHHhhc--cceeeeeeeccccc
Q 037578 79 LRYAKLIAPKDRNSVHVREIVKGIIEGETRVLAASMTMEEVFK-GTKQFKQEVFGKVQLELNQF--GLVIYNANIKQLVD 155 (506)
Q Consensus 79 ~~aa~~~~~~~~~~~~i~~~v~~~leg~lR~iig~mtleei~~-~R~~f~~~V~~~~~~dl~~~--Gl~I~sv~IkdI~d 155 (506)
+ .++ ......+.+++++.||++||+||++++++ .|+.+...+++.+...|..| ||+|.+|+|++|++
T Consensus 174 l---f~v-------~~~~~~L~~~~~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V~I~di~p 243 (419)
T PRK10930 174 L---FSV-------TSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDVNFQAARP 243 (419)
T ss_pred H---Hhc-------cCHHHHHHHHHHHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEeecCC
Confidence 3 222 22456788888999999999999999998 59999999999999999986 99999999999999
Q ss_pred CCCchHHHHhhhhhhhHHHhHhHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHH
Q 037578 156 VPGHEYFSYLGQKTQMEAANQAKVDVAEARMKGEVGAKLREGQTLQNAAKIDAETKVV 213 (506)
Q Consensus 156 ~~g~~y~~alg~~~~A~~~~~A~i~~Aeaer~~~i~~aeae~~~~~~~Ak~~~e~~Ia 213 (506)
|.. +.+++.....|+..+++.+.+|++.+...+..|+.++.+.++.|++.++..|.
T Consensus 244 P~e--V~~Af~~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~ 299 (419)
T PRK10930 244 PEE--VKAAFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTIL 299 (419)
T ss_pred CHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 984 89999999999888888899999888878877777766666656555555554
No 13
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=99.92 E-value=1.4e-25 Score=215.00 Aligned_cols=180 Identities=9% Similarity=0.144 Sum_probs=153.3
Q ss_pred ecCCeEEEEEccCCC-ceeecCcEEEecC-ceeeE-EEeeeeeeeccc-ceecCCCcEEEEeEEEEEecCCCCHHHHHHH
Q 037578 6 AGASQFLAITGSGID-DVKLAKKAFIWPF-QQCTV-FDITPVNYDFEV-QAMSAEKLEFKLPAVFTIGPREDDSDSLLRY 81 (506)
Q Consensus 6 ~~p~ealVvtg~g~~-rvv~gG~~fviP~-q~v~~-vslr~~~i~~~~-~~~T~D~v~v~V~av~~v~v~~~d~~~i~~a 81 (506)
||+.+++||.+||++ +++.||+||..|| +++.+ .++..+.+.++- .++|+|||.|.+++++||+|. ||. +
T Consensus 12 VpQ~~a~VvER~GkF~~iLePG~~fl~p~~d~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~rv~--dp~---~- 85 (301)
T KOG2620|consen 12 VPQQEAAVVERFGKFHRILEPGLHFLPPVIDKIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYRVV--DPY---A- 85 (301)
T ss_pred echhHhHHHHHhhhhhhhcCCcceechhhhhhHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEEEe--ccc---c-
Confidence 899999999999995 8889999999998 76644 344444333333 389999999999999999984 662 1
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHHHHHHhhhhccHHHHHhcHHHHHHHHHHHHHHHHhhccceeeeeeecccccCCCchH
Q 037578 82 AKLIAPKDRNSVHVREIVKGIIEGETRVLAASMTMEEVFKGTKQFKQEVFGKVQLELNQFGLVIYNANIKQLVDVPGHEY 161 (506)
Q Consensus 82 a~~~~~~~~~~~~i~~~v~~~leg~lR~iig~mtleei~~~R~~f~~~V~~~~~~dl~~~Gl~I~sv~IkdI~d~~g~~y 161 (506)
...|+++.++...|..++ ++.+|+.+|+|||+.+|..|+.++..|.+.++..+..||+++..+.|.||.+|++ +
T Consensus 86 ~dAsYgvenp~~aI~qla----qttmRsevgkltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~--V 159 (301)
T KOG2620|consen 86 DDASYGVENPEYAIQQLA----QTTMRSEVGKLTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPS--V 159 (301)
T ss_pred cccccccCCHHHHHHHHH----HHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHH--H
Confidence 123445555556666665 5678999999999999999999999999999999999999999999999999997 9
Q ss_pred HHHhhhhhhhHHHhHhHHHHHHHHhhhhHHHHHHhh
Q 037578 162 FSYLGQKTQMEAANQAKVDVAEARMKGEVGAKLREG 197 (506)
Q Consensus 162 ~~alg~~~~A~~~~~A~i~~Aeaer~~~i~~aeae~ 197 (506)
..+|.++..|+++++|.+.++|++|...|..||.++
T Consensus 160 ~~AM~~q~~AeR~krAailesEger~~~InrAEGek 195 (301)
T KOG2620|consen 160 KRAMNMQNEAERMKRAAILESEGERIAQINRAEGEK 195 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhhcchh
Confidence 999999999999999999999999999998888774
No 14
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.89 E-value=2.7e-22 Score=195.15 Aligned_cols=169 Identities=17% Similarity=0.148 Sum_probs=147.5
Q ss_pred cEEEecCCeEEEEEccCCC-cee-ecCcEEEecC-ceeeEEEeeeeeeecccc-eecCCCcEEEEeEEEEEecCCCCHHH
Q 037578 2 YYKVAGASQFLAITGSGID-DVK-LAKKAFIWPF-QQCTVFDITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGPREDDSDS 77 (506)
Q Consensus 2 ~y~~~~p~ealVvtg~g~~-rvv-~gG~~fviP~-q~v~~vslr~~~i~~~~~-~~T~D~v~v~V~av~~v~v~~~d~~~ 77 (506)
.+++++|++..|++.||++ +++ .||+||+||| +. .++|++.++++++++ ++|+|+.+|.|+++++|+| .||..
T Consensus 1 g~~iV~~ge~~Vv~rfGk~~~t~~~pGL~~~~P~~~~-~~vd~R~~~~~~~~~~v~T~D~~~v~V~~~V~~rV--~Dp~k 77 (219)
T cd03402 1 GLFVVEPNQARVLVLFGRYIGTIRRTGLRWVNPFSSK-KRVSLRVRNFESEKLKVNDANGNPIEIAAVIVWRV--VDTAK 77 (219)
T ss_pred CeEEECCCeeEEEEEcCcCcccccCCceEEEeccceE-EEEeeEEEEecCCCceeEcCCCCEEEEEEEEEEEE--cCHHH
Confidence 3789999999999999984 444 7999999999 54 789999999988876 8999999999999999999 48864
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhhhhccHHHHHh-------cHHHHHHHHHHHHHHHHhhccceeeeeee
Q 037578 78 LLRYAKLIAPKDRNSVHVREIVKGIIEGETRVLAASMTMEEVFK-------GTKQFKQEVFGKVQLELNQFGLVIYNANI 150 (506)
Q Consensus 78 i~~aa~~~~~~~~~~~~i~~~v~~~leg~lR~iig~mtleei~~-------~R~~f~~~V~~~~~~dl~~~Gl~I~sv~I 150 (506)
++ ... +.....+...+++.||+++|+|+++++++ +|+.++..+.+.+...+..|||+|.+++|
T Consensus 78 a~---~~v-------~~~~~~l~~~~~salR~vig~~~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~~~GI~V~~v~I 147 (219)
T cd03402 78 AV---FNV-------DDYEEFVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLAVAGVEVVEARI 147 (219)
T ss_pred HH---HHc-------CCHHHHHHHHHHHHHHHHHccCcHHHHhccccccccCHHHHHHHHHHHHHHHHHhhCcEEEEEEE
Confidence 43 222 22356888888999999999999999986 57999999999999999999999999999
Q ss_pred cccccCCCchHHHHhhhhhhhHHHhHhHHHHHHHH
Q 037578 151 KQLVDVPGHEYFSYLGQKTQMEAANQAKVDVAEAR 185 (506)
Q Consensus 151 kdI~d~~g~~y~~alg~~~~A~~~~~A~i~~Aeae 185 (506)
+++.+|+. +.++|-+.+.|++...|+-..+++.
T Consensus 148 ~~l~~p~e--i~~am~~R~~Ae~~~~Ar~~~~~Ga 180 (219)
T cd03402 148 THLAYAPE--IAQAMLQRQQASAIIAARRKIVEGA 180 (219)
T ss_pred EeecCCHH--HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999985 9999999999999999988877754
No 15
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=6.7e-22 Score=200.41 Aligned_cols=182 Identities=13% Similarity=0.176 Sum_probs=157.3
Q ss_pred cEEEecCCeEEEEEccCC-Cceee-cCcEEEecC----c-eeeEEEeeeeeeec-ccc-eecCCCcEEEEeEEEEEecCC
Q 037578 2 YYKVAGASQFLAITGSGI-DDVKL-AKKAFIWPF----Q-QCTVFDITPVNYDF-EVQ-AMSAEKLEFKLPAVFTIGPRE 72 (506)
Q Consensus 2 ~y~~~~p~ealVvtg~g~-~rvv~-gG~~fviP~----q-~v~~vslr~~~i~~-~~~-~~T~D~v~v~V~av~~v~v~~ 72 (506)
++++++|++..|+..||+ .+++. ||+||+||| . .+.+++++.+.+++ +++ ++|+|+..|+||.+++|+|
T Consensus 20 ~~~~v~~~~~~vv~r~G~~~~~~~~pGl~f~iP~~~~~~~~~~~~~~~~~~~d~~~~q~viT~D~~~V~vd~~v~~rv-- 97 (291)
T COG0330 20 SIFVVKEGERGVVLRFGRYTRTLGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEVITKDNVIVSVDAVVQYRV-- 97 (291)
T ss_pred eeEEEcCCceEEEEEecceeeecCCCceEEEcCCccceeeeeeeeeeEEEEeccCCcceEEecCCCEEEEEEEEEEEE--
Confidence 478999999999999998 58888 999999998 2 33678888888888 666 8999999999999999999
Q ss_pred CCHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhhhhccHHHHHhcHH-HHHHHHHHHHHHHHhhccceeeeeeec
Q 037578 73 DDSDSLLRYAKLIAPKDRNSVHVREIVKGIIEGETRVLAASMTMEEVFKGTK-QFKQEVFGKVQLELNQFGLVIYNANIK 151 (506)
Q Consensus 73 ~d~~~i~~aa~~~~~~~~~~~~i~~~v~~~leg~lR~iig~mtleei~~~R~-~f~~~V~~~~~~dl~~~Gl~I~sv~Ik 151 (506)
.||..++ ..+. .....+.+.+++.||+++|+|++++++++|+ .|+..+.+.++..+.+||+.|.+|+|+
T Consensus 98 ~d~~~~~---~~v~-------~~~~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V~~V~i~ 167 (291)
T COG0330 98 TDPQKAV---YNVE-------NAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEIK 167 (291)
T ss_pred cCHHHHH---HhcC-------CHHHHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhhhcCcEEEEEEEe
Confidence 4886332 2221 1566777788899999999999999999888 999999999999999999999999999
Q ss_pred ccccCCCchHHHHhhhhhhhHHHhHhHHHHHHHHhhhhHHHHHHhh
Q 037578 152 QLVDVPGHEYFSYLGQKTQMEAANQAKVDVAEARMKGEVGAKLREG 197 (506)
Q Consensus 152 dI~d~~g~~y~~alg~~~~A~~~~~A~i~~Aeaer~~~i~~aeae~ 197 (506)
++++|.. +..+|..+..+++.+++.+.+|++++.+.+..+++++
T Consensus 168 ~i~~p~e--v~~a~~~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~ 211 (291)
T COG0330 168 DIDPPEE--VQAAMEKQMAAERDKRAEILEAEGEAQAAILRAEGEA 211 (291)
T ss_pred ecCCCHH--HHHHHHHHHHHHHHHHHHHHHhHhHHhhhhhhhhhhH
Confidence 9999985 9999999999999999999999999887774444443
No 16
>smart00244 PHB prohibitin homologues. prohibitin homologues
Probab=99.88 E-value=2.6e-21 Score=177.68 Aligned_cols=153 Identities=14% Similarity=0.194 Sum_probs=133.8
Q ss_pred cEEEecCCeEEEEEccCC-CceeecCcEEEecC-ceeeEEEeeeeeeecccc-eecCCCcEEEEeEEEEEecCCCCHHHH
Q 037578 2 YYKVAGASQFLAITGSGI-DDVKLAKKAFIWPF-QQCTVFDITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGPREDDSDSL 78 (506)
Q Consensus 2 ~y~~~~p~ealVvtg~g~-~rvv~gG~~fviP~-q~v~~vslr~~~i~~~~~-~~T~D~v~v~V~av~~v~v~~~d~~~i 78 (506)
+|++++|+++.|++++|+ .+++.||+||+||| +++.++|++.+++.++.. +.|+|+++|.+++++.|+| .||..+
T Consensus 2 ~~~~V~~g~~~v~~~~G~~~~~~~pG~~~~~P~~~~~~~~~~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv--~d~~~~ 79 (160)
T smart00244 2 AIKVVGEGEAGVVERLGRVLRVLGPGLHFLIPFIDRVKKVDLRAQTDDVPPQEIITKDNVKVSVDAVVYYRV--LDPLKA 79 (160)
T ss_pred cEEEEcccEEEEEEecCccccccCCCEEEEecceeEEEEEeeEEEeecCCceEEEecCCcEEEEeEEEEEEE--ccHHHH
Confidence 689999999999999997 45788999999999 999999999998877664 7999999999999999998 488643
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhhhhccHHHHHh-cHHHHHHHHHHHHHHHHhhccceeeeeeecccccCC
Q 037578 79 LRYAKLIAPKDRNSVHVREIVKGIIEGETRVLAASMTMEEVFK-GTKQFKQEVFGKVQLELNQFGLVIYNANIKQLVDVP 157 (506)
Q Consensus 79 ~~aa~~~~~~~~~~~~i~~~v~~~leg~lR~iig~mtleei~~-~R~~f~~~V~~~~~~dl~~~Gl~I~sv~IkdI~d~~ 157 (506)
..++. +.+. ..+...+++++|+++++++++++++ +|+.|.+.+.+.+.+++.+||++|.++.|++|++|+
T Consensus 80 ---~~~~~----~~~~--~~l~~~i~~~ir~~i~~~~~~~i~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~~p~ 150 (160)
T smart00244 80 ---VYRVL----DADY--AVIEQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERAEAWGIEVEDVEIKDIRLPE 150 (160)
T ss_pred ---hhhcC----CHHH--HHHHHHHHHHHHHHHccccHHHHHHhhHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCCH
Confidence 23332 2221 5788888999999999999999999 699999999999999999999999999999999998
Q ss_pred CchHHHHhhh
Q 037578 158 GHEYFSYLGQ 167 (506)
Q Consensus 158 g~~y~~alg~ 167 (506)
. +.++|..
T Consensus 151 ~--i~~ai~~ 158 (160)
T smart00244 151 E--IQEAMEQ 158 (160)
T ss_pred H--HHHHHHh
Confidence 5 9998864
No 17
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance. A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.
Probab=99.87 E-value=3.5e-22 Score=186.73 Aligned_cols=172 Identities=18% Similarity=0.274 Sum_probs=114.0
Q ss_pred EEecCCeEEEEEccCC-CceeecCcEEEecC-ceeeEEEeeeeeeeccc---ceecCCCcEEEEeEEEEEecCCCCHHHH
Q 037578 4 KVAGASQFLAITGSGI-DDVKLAKKAFIWPF-QQCTVFDITPVNYDFEV---QAMSAEKLEFKLPAVFTIGPREDDSDSL 78 (506)
Q Consensus 4 ~~~~p~ealVvtg~g~-~rvv~gG~~fviP~-q~v~~vslr~~~i~~~~---~~~T~D~v~v~V~av~~v~v~~~d~~~i 78 (506)
++|+|+++.|++.+|+ ..++.||+||+||| +++..+|++.+.+++.. .+.|+|++++.+++.++|+|. |+..+
T Consensus 1 ~~V~~g~~~V~~~~G~~~~~~~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i~--~~~~~ 78 (179)
T PF01145_consen 1 YTVPPGEVGVVVRFGKVKDVLGPGLHFVIPFIQKVYVYPTRVQTIEFTREPITVRTKDGVPVDVDVTVTYRIE--DPPKF 78 (179)
T ss_dssp -------------------------------EEE--S--SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEES---CCCC
T ss_pred CEeCCCEEEEEEECCeEeEEECCCeEEEeCCcCeEEEEeCEEEecccchhhhhhhhcccceeeeeEEEEEEec--hHHHH
Confidence 4799999999999987 35678999999998 99999999999999988 599999999999999999994 55433
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhhhhccHHHHHhcHHHHHHHHHHHHHHHHhhccceeeeeeecccccCCC
Q 037578 79 LRYAKLIAPKDRNSVHVREIVKGIIEGETRVLAASMTMEEVFKGTKQFKQEVFGKVQLELNQFGLVIYNANIKQLVDVPG 158 (506)
Q Consensus 79 ~~aa~~~~~~~~~~~~i~~~v~~~leg~lR~iig~mtleei~~~R~~f~~~V~~~~~~dl~~~Gl~I~sv~IkdI~d~~g 158 (506)
+ ..|. .+.+.....+..++.+++|+++++|++.+++++|..|...+.+.+...|.+||++|.+|+|.++++++.
T Consensus 79 ~---~~~~---~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~v~~~l~~~~~~~Gi~i~~v~i~~~~~~~~ 152 (179)
T PF01145_consen 79 V---QNYE---GGEEDPENLLRQIVESALREVISSYSLEEIYSNREEIADEVREQLQEALEEYGIEITSVQITDIDPPQE 152 (179)
T ss_dssp C---CCCS---S-HCHHHHHHHHHHHHHHHHHHHCS-HHHHHHTHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEECTT
T ss_pred H---Hhhh---cchhhhhhhhhhhhhhhhheEeeeeehHHhhhhhhhhhHhHHHHHhhhccccEEEEEEEEEeecCCCHH
Confidence 2 2331 145778999999999999999999999999999999999999999999999999999999999999986
Q ss_pred chHHHHhhhhhhhHHHh-HhHHHHHHHH
Q 037578 159 HEYFSYLGQKTQMEAAN-QAKVDVAEAR 185 (506)
Q Consensus 159 ~~y~~alg~~~~A~~~~-~A~i~~Aeae 185 (506)
|.++|.....++... ++.+.+|+++
T Consensus 153 --~~~~i~~~~~a~~~~~~~~~~~a~~e 178 (179)
T PF01145_consen 153 --VEEAIEEKQRAEQEAQQAEIERAEAE 178 (179)
T ss_dssp --HHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999998888877777 5655555544
No 18
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=99.86 E-value=2e-21 Score=188.72 Aligned_cols=174 Identities=14% Similarity=0.149 Sum_probs=149.6
Q ss_pred cEEEecCCeEEEEEccCCC---ceeecCcEEEecC-ceeeEEEeeeeeeecccc-eecCCCcEEEEeEEEEEecCCCCHH
Q 037578 2 YYKVAGASQFLAITGSGID---DVKLAKKAFIWPF-QQCTVFDITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGPREDDSD 76 (506)
Q Consensus 2 ~y~~~~p~ealVvtg~g~~---rvv~gG~~fviP~-q~v~~vslr~~~i~~~~~-~~T~D~v~v~V~av~~v~v~~~d~~ 76 (506)
+.++++..|-+||.++|+- ....||..|++|| +++.++|||+++++++++ .+|+|.+.|.||+++||++ .||.
T Consensus 54 clKiv~eYeR~VIfRLGRl~~~~~rGPGi~fvlPCIDt~~kVDLRt~sfnVPpqeIltkDsvtvsVdAvVyyri--~dpi 131 (288)
T KOG2621|consen 54 CLKIVQEYERAVIFRLGRLRTGGARGPGLFFLLPCIDTFRKVDLRTQSFNVPPQEILTKDSVTISVDAVVYYRI--SDPI 131 (288)
T ss_pred HHHhhHHHhhhhheeeeeccccCCCCCCeEEEecccceeeeeeeeEEeecCCHHHHhcccceEEEeceEEEEEe--cCHH
Confidence 4578889999999999963 3457888999999 999999999999999998 8999999999999999999 4885
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhhhhccHHHHHhcHHHHHHHHHHHHHHHHhhccceeeeeeecccccC
Q 037578 77 SLLRYAKLIAPKDRNSVHVREIVKGIIEGETRVLAASMTMEEVFKGTKQFKQEVFGKVQLELNQFGLVIYNANIKQLVDV 156 (506)
Q Consensus 77 ~i~~aa~~~~~~~~~~~~i~~~v~~~leg~lR~iig~mtleei~~~R~~f~~~V~~~~~~dl~~~Gl~I~sv~IkdI~d~ 156 (506)
.-+ .+. ++.....+-+.++.||.++|+.||.|++++|+.|..+++..+++....||++|.+|+|+||+.|
T Consensus 132 ~sv---~~V-------~Da~~sTr~lAqttLrn~lgtk~L~eils~r~~is~~~~~~Ld~~T~~WGvkVeRVEikDvrlp 201 (288)
T KOG2621|consen 132 IAV---NNV-------GDADNATRLLAQTTLRNYLGTKTLSEILSSREVIAQEAQKALDEATEPWGVKVERVEIKDVRLP 201 (288)
T ss_pred HHH---Hhc-------cCHHHHHHHHHHHHHHHHHccCcHHHHHHhHHHHHHHHHHHhhhcccccceEEEEEEEeeeech
Confidence 332 222 2344455555678999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHhhhhhhhHHHhHhHHHHHHHHhhhh
Q 037578 157 PGHEYFSYLGQKTQMEAANQAKVDVAEARMKGE 189 (506)
Q Consensus 157 ~g~~y~~alg~~~~A~~~~~A~i~~Aeaer~~~ 189 (506)
.. ...+|..+..|.++.+|++--||+++.+-
T Consensus 202 ~q--lqramaaeAeA~reA~Akviaaege~~as 232 (288)
T KOG2621|consen 202 AQ--LQRAMAAEAEATREARAKVIAAEGEKKAS 232 (288)
T ss_pred Hh--hhhhhhchhhhhhhhhhhHHHHHhhhHHH
Confidence 86 99999988888888888888888886543
No 19
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=99.83 E-value=6.2e-20 Score=163.91 Aligned_cols=124 Identities=23% Similarity=0.468 Sum_probs=111.0
Q ss_pred EEeeeeeeecccc-eecCCCcEEEEeEEEEEecCCCCHHHHH-HHHHhhccCCCCHHHHHHHHHHHHHHHHHHhhhhccH
Q 037578 39 FDITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGPREDDSDSLL-RYAKLIAPKDRNSVHVREIVKGIIEGETRVLAASMTM 116 (506)
Q Consensus 39 vslr~~~i~~~~~-~~T~D~v~v~V~av~~v~v~~~d~~~i~-~aa~~~~~~~~~~~~i~~~v~~~leg~lR~iig~mtl 116 (506)
+|++++.++++.+ ++|+|++++.|+++++|+|. ||..++ .+.++|++ .+.+.+..++.++++++||+++|+||+
T Consensus 2 ~~lr~~~~~~~~q~v~TkD~~~v~vd~~~~~rV~--d~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~lR~~ig~~tl 77 (128)
T cd03399 2 LSLTSMVLRVGSEAVITRDGVRVDVTAVFQVKVG--GTEEAIATAAERFLG--KSEEEIEELVKEVLEGHLRAVVGTMTV 77 (128)
T ss_pred ccccceeeeccccceecCCCcEEEEEEEEEEEeC--CCHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 6889998899887 89999999999999999995 655544 45567753 235779999999999999999999999
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHhhccceeeeeeecccccCCCchHHHHhhhh
Q 037578 117 EEVFKGTKQFKQEVFGKVQLELNQFGLVIYNANIKQLVDVPGHEYFSYLGQK 168 (506)
Q Consensus 117 eei~~~R~~f~~~V~~~~~~dl~~~Gl~I~sv~IkdI~d~~g~~y~~alg~~ 168 (506)
++++++|+.|...|.+.+..++.+|||+|.+++|++|+++++ |++++|.+
T Consensus 78 ~el~~~R~~i~~~i~~~v~~~~~~~Gi~i~~v~I~~i~~~~~--~~~~~~~~ 127 (128)
T cd03399 78 EEIYEDRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITDTDG--YLNNLGDA 127 (128)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHCCCEEEEEeeEEecCCCC--CHHHcCCC
Confidence 999999999999999999999999999999999999999997 99999965
No 20
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.65 E-value=2.7e-15 Score=144.33 Aligned_cols=158 Identities=9% Similarity=0.081 Sum_probs=127.7
Q ss_pred cEEEecCCeEEEEEccCC-CceeecCcEEEe----cC-c---------------eeeEEEeeeeeeeccc-------cee
Q 037578 2 YYKVAGASQFLAITGSGI-DDVKLAKKAFIW----PF-Q---------------QCTVFDITPVNYDFEV-------QAM 53 (506)
Q Consensus 2 ~y~~~~p~ealVvtg~g~-~rvv~gG~~fvi----P~-q---------------~v~~vslr~~~i~~~~-------~~~ 53 (506)
+..+|+|++..|+..+|+ .+++.||+|+.| |+ + .+.+++.+.+.+.... ...
T Consensus 15 s~~iV~e~~~av~~~~Gk~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 94 (207)
T cd03408 15 SQLIVREGQAAVFVNEGKVADVFAPGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEVYFFNTRVFTDLLWGTPAPVFGRDS 94 (207)
T ss_pred CEEEEcCCcEEEEEECCEEEEEecCCcceeeecCccHHHHhcChhhhCcCCceeEEEEEECEEEeccccCCCCCeeeeCC
Confidence 468999999999999997 577788887655 43 2 2667788776543221 146
Q ss_pred cCCCcEEEEeEEEEEecCCCCHHHHHHHHHhhccCC--CCHHHHHHHHHHHHHHHHHHhhhhccHHHHHhc--HHHHHHH
Q 037578 54 SAEKLEFKLPAVFTIGPREDDSDSLLRYAKLIAPKD--RNSVHVREIVKGIIEGETRVLAASMTMEEVFKG--TKQFKQE 129 (506)
Q Consensus 54 T~D~v~v~V~av~~v~v~~~d~~~i~~aa~~~~~~~--~~~~~i~~~v~~~leg~lR~iig~mtleei~~~--R~~f~~~ 129 (506)
|.|+++|.++++++|+| .||..++. ++.+.. .+.+.+...+.+.++++||+++|++++++++.+ |++|+..
T Consensus 95 ~~~~v~v~v~~~~~~kI--~Dp~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~l~~~~~r~~i~~~ 169 (207)
T cd03408 95 EFGGVPLRAFGTYSLKV--TDPVLFVT---NIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAVMLLAANRDELSKA 169 (207)
T ss_pred ccceEEEEeeEEEEEEE--cCHHHHHH---HhcCCCcceeHHHHHHHHHHHHHHHHHHHHHhcCCeeEEhhhhHHHHHHH
Confidence 78999999999999999 59987764 332211 123578899999999999999999999999997 9999999
Q ss_pred HHHHHHHHHhhccceeeeeeecccccCCCchHHHHhh
Q 037578 130 VFGKVQLELNQFGLVIYNANIKQLVDVPGHEYFSYLG 166 (506)
Q Consensus 130 V~~~~~~dl~~~Gl~I~sv~IkdI~d~~g~~y~~alg 166 (506)
+++.+.+.+.+|||+|.+|.|++|++|.. +.++|.
T Consensus 170 v~~~l~~~~~~~Gi~i~~v~I~~i~~p~e--~~~ai~ 204 (207)
T cd03408 170 VREALAPWFASFGLELVSVYIESISYPDE--VQKLID 204 (207)
T ss_pred HHHHHHHHHHhcCcEEEEEEEEeecCCHH--HHHHHH
Confidence 99999999999999999999999999984 777765
No 21
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.52 E-value=7.3e-14 Score=123.94 Aligned_cols=119 Identities=12% Similarity=0.140 Sum_probs=97.6
Q ss_pred EEeeeeeeecccceecCCCcEEEEeEEEEEecCCCCHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhhhhccHHH
Q 037578 39 FDITPVNYDFEVQAMSAEKLEFKLPAVFTIGPREDDSDSLLRYAKLIAPKDRNSVHVREIVKGIIEGETRVLAASMTMEE 118 (506)
Q Consensus 39 vslr~~~i~~~~~~~T~D~v~v~V~av~~v~v~~~d~~~i~~aa~~~~~~~~~~~~i~~~v~~~leg~lR~iig~mtlee 118 (506)
+|++.++++.+..++|+|+++|.|+.+++|+|. ++..+..+ ..++ .+.....+.+.+.++||+++|+||+++
T Consensus 3 ~~~r~~~~~~~~~v~T~D~~~v~vd~~v~y~V~--~~~~~~~~-~~~~-----~~~~~~~i~~~~~~~lR~~~~~~~~~e 74 (124)
T cd03400 3 YSTRLQEVDEKIDVLSKEGLSINADVSVQYRIN--PNKAAAVH-SKLG-----TDYARKIVRPTFRSLVREVTGRYTAEQ 74 (124)
T ss_pred ccceeeecccceEEECCCCCEEEEEEEEEEEEC--hhhHHHHH-HHhC-----cchhheeechhHHHHHHHHhcCCCHHH
Confidence 466666666566689999999999999999994 33333222 2342 124566788889999999999999999
Q ss_pred HHh-cHHHHHHHHHHHHHHHHhhccceeeeeeecccccCCCchHHHHhhh
Q 037578 119 VFK-GTKQFKQEVFGKVQLELNQFGLVIYNANIKQLVDVPGHEYFSYLGQ 167 (506)
Q Consensus 119 i~~-~R~~f~~~V~~~~~~dl~~~Gl~I~sv~IkdI~d~~g~~y~~alg~ 167 (506)
+++ +|+.|...+++.+...+.+|||.|.+|+|++|++|+. +.+++..
T Consensus 75 ~i~~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~P~~--v~~aI~~ 122 (124)
T cd03400 75 IYSTKRKEIESAIKKELIEEFVGDGLILEEVLLRNIKLPDQ--IADAIEA 122 (124)
T ss_pred HhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEEecccCCHH--HHHHHHh
Confidence 997 7999999999999999999999999999999999985 8888753
No 22
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i
Probab=99.28 E-value=4.7e-11 Score=103.51 Aligned_cols=105 Identities=14% Similarity=0.261 Sum_probs=90.0
Q ss_pred ceecCCCcEEEEeEEEEEecCCCCHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhhhhccHHHHHhcHHHHHHHH
Q 037578 51 QAMSAEKLEFKLPAVFTIGPREDDSDSLLRYAKLIAPKDRNSVHVREIVKGIIEGETRVLAASMTMEEVFKGTKQFKQEV 130 (506)
Q Consensus 51 ~~~T~D~v~v~V~av~~v~v~~~d~~~i~~aa~~~~~~~~~~~~i~~~v~~~leg~lR~iig~mtleei~~~R~~f~~~V 130 (506)
.++|+|+++|.++++++|+|. ++..+ ...+.+ ... ...+...+.+.+|.++++|+++++.++|..|...|
T Consensus 15 ~~~t~d~~~i~~~~~~~~~v~--~~~~~---~~~~~~----~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~v 84 (121)
T cd02106 15 EVLTKDNVPVRVDAVVQYRVV--DPVKA---LYNVRD----PED-EEALRQLAQSALRSVIGKMTLDELLEDRDEIAAEV 84 (121)
T ss_pred eEEecCCCEEEEEEEEEEEEe--CHHHH---HHhcCC----ccH-HHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHH
Confidence 389999999999999999994 66522 223322 112 67888889999999999999999999999999999
Q ss_pred HHHHHHHHhhccceeeeeeecccccCCCchHHHHhhh
Q 037578 131 FGKVQLELNQFGLVIYNANIKQLVDVPGHEYFSYLGQ 167 (506)
Q Consensus 131 ~~~~~~dl~~~Gl~I~sv~IkdI~d~~g~~y~~alg~ 167 (506)
++.+..++.+||++|.++.|+++++|+. |.+++..
T Consensus 85 ~~~l~~~~~~~Gi~i~~v~i~~i~~~~~--~~~ai~~ 119 (121)
T cd02106 85 REALQEDLDKYGIEVVDVRIKDIDPPEE--VQEAMED 119 (121)
T ss_pred HHHHHHHHHhcCCEEEEEEEEecCCCHH--HHHHHHh
Confidence 9999999999999999999999999985 8888864
No 23
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=7.5e-10 Score=104.95 Aligned_cols=185 Identities=14% Similarity=0.196 Sum_probs=141.7
Q ss_pred EEEecCCeEEEEEccCC--CceeecCcEEEecC-ceeeEEEeeeeeeecccceecCCCcEEEEeEEEEEecCCCCHHHHH
Q 037578 3 YKVAGASQFLAITGSGI--DDVKLAKKAFIWPF-QQCTVFDITPVNYDFEVQAMSAEKLEFKLPAVFTIGPREDDSDSLL 79 (506)
Q Consensus 3 y~~~~p~ealVvtg~g~--~rvv~gG~~fviP~-q~v~~vslr~~~i~~~~~~~T~D~v~v~V~av~~v~v~~~d~~~i~ 79 (506)
|-+-+-..+.+.+++|+ .++...|.||.+|| ++-..+|+|.....+...+=|+|-.-|++..-+--+| +++.+-
T Consensus 39 ~nVdgGHRAI~fnRi~Gik~~iy~EGtHf~iPwfe~pIiYDvRarP~~i~S~tGskDLQmVnI~lRVLsRP---~~~~Lp 115 (290)
T KOG3090|consen 39 YNVDGGHRAIVFNRIGGIKDDIYPEGTHFRIPWFERPIIYDVRARPRLISSPTGSKDLQMVNIGLRVLSRP---MADQLP 115 (290)
T ss_pred EeecCCceEEEEeccccchhccccCCceEeeeccccceeeeeccCcccccCCCCCcceeEEEeeeEEecCC---ChhhhH
Confidence 55556677888888886 57778899999997 8877889988766666667788888888876666666 444443
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHHHHHhhhhccHHHHHhcHHHHHHHHHHHHHHHHhhccceeeeeeecccccCCCc
Q 037578 80 RYAKLIAPKDRNSVHVREIVKGIIEGETRVLAASMTMEEVFKGTKQFKQEVFGKVQLELNQFGLVIYNANIKQLVDVPGH 159 (506)
Q Consensus 80 ~aa~~~~~~~~~~~~i~~~v~~~leg~lR~iig~mtleei~~~R~~f~~~V~~~~~~dl~~~Gl~I~sv~IkdI~d~~g~ 159 (506)
...+.++ .+.++. .+-.++...|.++++++...++++.|+..+..|+..+.+...+|.+.+++|.|+.+++.+.
T Consensus 116 ~iyrtLG-~~y~ER----VLPSIinEvLKaVVAqfNASqLITQRe~VSrliRk~L~eRA~~Fni~LDDVSiT~l~F~~e- 189 (290)
T KOG3090|consen 116 EIYRTLG-QNYDER----VLPSIINEVLKAVVAQFNASQLITQREQVSRLIRKILTERAADFNIALDDVSITELTFGKE- 189 (290)
T ss_pred HHHHHhc-cCcchh----hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccceEeecceeeeeecCHH-
Confidence 3334443 333333 3334455678999999999999999999999999999999999999999999999999885
Q ss_pred hHHHHhhhhhhhHHHhHhH---HHHHHHHhhhhHHHHHHhh
Q 037578 160 EYFSYLGQKTQMEAANQAK---VDVAEARMKGEVGAKLREG 197 (506)
Q Consensus 160 ~y~~alg~~~~A~~~~~A~---i~~Aeaer~~~i~~aeae~ 197 (506)
|-.++..+++|..+.+.. ++.|+.+|.+.|-.|+.|+
T Consensus 190 -fTaAiEaKQvA~QeAqRA~F~VekA~qek~~~ivrAqGEa 229 (290)
T KOG3090|consen 190 -FTAAIEAKQVAAQEAQRAKFIVEKAEQEKQSAIVRAQGEA 229 (290)
T ss_pred -HHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhccch
Confidence 999998888876555422 6777777777776666654
No 24
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.14 E-value=7.5e-09 Score=103.84 Aligned_cols=224 Identities=26% Similarity=0.273 Sum_probs=126.5
Q ss_pred HHHHHhhhhccHHHHHhcH--HHHHHHHHHHHHHHHhhccceeeeeeecccccCCCchHHHHhhhhhhhHHHhHhHHHHH
Q 037578 105 GETRVLAASMTMEEVFKGT--KQFKQEVFGKVQLELNQFGLVIYNANIKQLVDVPGHEYFSYLGQKTQMEAANQAKVDVA 182 (506)
Q Consensus 105 g~lR~iig~mtleei~~~R--~~f~~~V~~~~~~dl~~~Gl~I~sv~IkdI~d~~g~~y~~alg~~~~A~~~~~A~i~~A 182 (506)
+.+--+|=++|+.|++.+- +.|.. +|-. ....++ +|.+ +| .|++++++-|.++
T Consensus 138 ~~mGi~I~s~tiKdl~D~~g~~Ylss------------LGka-~taev~--rdAr-------Ig---vAEAk~eaGikEa 192 (428)
T KOG2668|consen 138 GQMGIVIYSATIKDLVDVPGHEYLSS------------LGKA-TTAEVA--RDAR-------IG---VAEAKREAGIKEA 192 (428)
T ss_pred hhcceEEEEeEhhhhhcccchHHHHH------------hhhH-HHHHHH--hhcc-------cc---hHHhhhhcchhhh
Confidence 4556667788888888754 44443 3332 111111 1111 22 6778888888888
Q ss_pred HHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHhhhhhHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037578 183 EARMKGEVGAKLREGQTLQNAAKIDAETKVVKIQREGQGQKEEMRVKTEVKVFENQREAEVAEANADLAKKKAGWAKEAK 262 (506)
Q Consensus 183 eaer~~~i~~aeae~~~~~~~Ak~~~e~~Ia~a~~~~~~~~ae~~~~~~i~~a~~~~e~~~A~a~a~~~~~~a~~~~e~~ 262 (506)
++.++..- ++.+.+..++...+..+.. .+.+.-++.+.++++++++..+.++-.+.
T Consensus 193 ~~~~~~~a----ak~~aetkI~~~qR~~el~--------------------Ka~~dveV~~~~aEA~lAyelqaak~kq~ 248 (428)
T KOG2668|consen 193 TGLTEQNA----AKIDAETKIASAQRTKELI--------------------KAATDVEVNTNKAEADLAYELQAAKTKQA 248 (428)
T ss_pred hHHHHHhH----HhhhhhhhHHHhhhhHHHH--------------------HhhhhhHhhhhHHHHHHHHHHHHHHHHHH
Confidence 88765432 2233333444444432221 12333344444444444444333333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH--HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037578 263 VAEVESAKAVALRDAELQREVEKMNAATRMEKLRAEFVSKANVEYES--KVQEANWELYQKQKEAEAILNLKIKEAEAKK 340 (506)
Q Consensus 263 ~a~a~a~~a~~~~~~~~q~ev~~~~~~~~~~~l~~e~~~~A~~~~~~--~~~~AeA~~~~~~~~AeA~~~~~~~eAea~~ 340 (506)
+. +.++..+..++..+..|++++..++.++|.+..+.+|+++.+. +.+.|+.++|-.+..|||.+++.+.+|||
T Consensus 249 i~--~e~~qV~vVEr~kqvAv~eqEiqr~~~el~A~vR~paeAe~~r~~klaEAnk~~~~~qaqAEA~~irk~geAEA-- 324 (428)
T KOG2668|consen 249 IR--EEEIQVAVVERTKQVAVREQEIQRRVEELNATVRTPAEAEVERETKLAEANKELYNKQAQAEAELIRKQGEAEA-- 324 (428)
T ss_pred HH--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH--
Confidence 22 1223333444445555555555566677777888887777664 44556666777888888888877665554
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 037578 341 ATAEAEFYARKLAADGDLYAKQKEAEGQEALGKAQGEYLKSISTALGGDN 390 (506)
Q Consensus 341 ~~AeA~~~~~~~~Aea~~~~~~aeAeai~~~g~AeAe~~~~~aeA~~~~~ 390 (506)
..+++.++|+++++.++ |++++++++| ..++.+.++++..+
T Consensus 325 -----~~ieA~akaeaeqm~~k--a~v~~~y~~a--a~l~~lLealp~Ia 365 (428)
T KOG2668|consen 325 -----FAIEADAKAEAEQMAAK--AEVYQAYAQA--AYLRTLLEALPMIA 365 (428)
T ss_pred -----HHHHhhhhhHHHHHHHH--HHHHHHhhhh--HHHHHHHHHHHHHH
Confidence 44444556677776655 6667777766 88888888888643
No 25
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=2e-09 Score=102.12 Aligned_cols=185 Identities=17% Similarity=0.216 Sum_probs=132.5
Q ss_pred EEEecCCeEEEEEccCC--CceeecCcEEEecC-ceeeEEEeeeeeeecccceecCCCcEEEEeEEEEEecCCCCHHHHH
Q 037578 3 YKVAGASQFLAITGSGI--DDVKLAKKAFIWPF-QQCTVFDITPVNYDFEVQAMSAEKLEFKLPAVFTIGPREDDSDSLL 79 (506)
Q Consensus 3 y~~~~p~ealVvtg~g~--~rvv~gG~~fviP~-q~v~~vslr~~~i~~~~~~~T~D~v~v~V~av~~v~v~~~d~~~i~ 79 (506)
|-+-+-..+.+.-+|.+ .-++..|.||.||| +.-..+|.++....+++..-|+|-..|++.-.+-+++..+--..|+
T Consensus 28 y~vdgg~ravifdrf~gv~~~vvgegthflipw~qk~~i~d~rs~p~~v~~itGskdLQ~VniTlril~rp~~sqLP~If 107 (271)
T KOG3083|consen 28 YNVDGGHRAVIFDRFRGVQDQVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVVSQLPCIF 107 (271)
T ss_pred cccCCCceeEEeecccchhhhcccCCceeeeeeccCcEEEeccCCCcccccccCchhhhcccceEEEEecccccccchHH
Confidence 33333444445555543 45677888999999 9988899998866666667788877777776666665312222232
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHHHHHhhhhccHHHHHhcHHHHHHHHHHHHHHHHhhccceeeeeeecccccCCCc
Q 037578 80 RYAKLIAPKDRNSVHVREIVKGIIEGETRVLAASMTMEEVFKGTKQFKQEVFGKVQLELNQFGLVIYNANIKQLVDVPGH 159 (506)
Q Consensus 80 ~aa~~~~~~~~~~~~i~~~v~~~leg~lR~iig~mtleei~~~R~~f~~~V~~~~~~dl~~~Gl~I~sv~IkdI~d~~g~ 159 (506)
..+ |.+-|+.-+-.+. ..-|++++.++.-.|+++.|+-....|.+.+.+....|||.++++.|+-+++-.
T Consensus 108 ---~~~-G~dyDErVLpsI~----~eiLKsVVa~FdA~eliTqRe~vS~~v~~~lt~rA~~Fgl~LddvsiThltfGk-- 177 (271)
T KOG3083|consen 108 ---TSI-GEDYDERVLPSIT----TEILKSVVARFDAGELITQRELVSRQVSNDLTERAATFGLILDDVSITHLTFGK-- 177 (271)
T ss_pred ---Hhh-cccccccccccch----HHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHhhCeeechhhhhhhhhhH--
Confidence 223 3333322233333 345899999999999999999999999999999999999999999999999876
Q ss_pred hHHHHhhhhhhhHHHhH-hH--HHHHHHHhhhhHHHHHHhh
Q 037578 160 EYFSYLGQKTQMEAANQ-AK--VDVAEARMKGEVGAKLREG 197 (506)
Q Consensus 160 ~y~~alg~~~~A~~~~~-A~--i~~Aeaer~~~i~~aeae~ 197 (506)
++-+++..+++|+.+.+ |+ +..|+.+|.+.+-.||.+.
T Consensus 178 EFt~AvE~KQVAQQEAErarFvVeKAeQqk~aavIsAEGds 218 (271)
T KOG3083|consen 178 EFTEAVEAKQVAQQEAERARFVVEKAEQQKKAAVISAEGDS 218 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeecccch
Confidence 49999998888876654 33 6677777777776666554
No 26
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]
Probab=98.54 E-value=2.2e-05 Score=75.21 Aligned_cols=148 Identities=13% Similarity=0.136 Sum_probs=101.2
Q ss_pred EEEecCCeEEEEEccCC--CceeecCcEEEecC-ceeeEEEeeeeeeec-ccceecCCCcEEEEeEEEEEecCCCCHHHH
Q 037578 3 YKVAGASQFLAITGSGI--DDVKLAKKAFIWPF-QQCTVFDITPVNYDF-EVQAMSAEKLEFKLPAVFTIGPREDDSDSL 78 (506)
Q Consensus 3 y~~~~p~ealVvtg~g~--~rvv~gG~~fviP~-q~v~~vslr~~~i~~-~~~~~T~D~v~v~V~av~~v~v~~~d~~~i 78 (506)
.++++.+.+.|-.+.|- ..+-.||.|+.+|| -++..+.+..++-.+ ++.|=|+.+|-+..|-.--|.. -.|+.+
T Consensus 23 vHkieEGHvgvYyRGGALL~~~t~PG~Hl~lPFiTt~ksVQvTLQTDev~nvPCGTsGGVlIyfdrIEVVN~--L~~d~V 100 (322)
T KOG2962|consen 23 VHKIEEGHVGVYYRGGALLTSITGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVLIYFDRIEVVNF--LRPDAV 100 (322)
T ss_pred HhhcccCceEEEEecceeeeccCCCCcEEEeeeeeceeeeEEEeeccccccCCCCCCCcEEEEEehhhhhhh--hchhHH
Confidence 35677888888887774 34557888999999 777666666554343 3347889988776653211111 123445
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhhhhccHHHHHhc-HHHHHHHHHHHHHHHHhhc--cceeeeeeeccccc
Q 037578 79 LRYAKLIAPKDRNSVHVREIVKGIIEGETRVLAASMTMEEVFKG-TKQFKQEVFGKVQLELNQF--GLVIYNANIKQLVD 155 (506)
Q Consensus 79 ~~aa~~~~~~~~~~~~i~~~v~~~leg~lR~iig~mtleei~~~-R~~f~~~V~~~~~~dl~~~--Gl~I~sv~IkdI~d 155 (506)
+....++. .+ .=..++-+.+--.+-..++.+||.++|-+ -+++...+++.++.||..| ||.|..|.++.-..
T Consensus 101 ydiv~NYt-vd----YD~~lIfnKiHHE~NQFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl~iqaVRVTKPkI 175 (322)
T KOG2962|consen 101 YDIVKNYT-VD----YDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGLEIQAVRVTKPKI 175 (322)
T ss_pred HHHHHHcc-cC----CcchhhhhHHHHHHHhHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEEEecCCCC
Confidence 55444543 11 12344555566678899999999999975 7899999999999999876 89999999885554
Q ss_pred CC
Q 037578 156 VP 157 (506)
Q Consensus 156 ~~ 157 (506)
|.
T Consensus 176 PE 177 (322)
T KOG2962|consen 176 PE 177 (322)
T ss_pred hH
Confidence 43
No 27
>PTZ00491 major vault protein; Provisional
Probab=98.47 E-value=0.00014 Score=81.84 Aligned_cols=154 Identities=15% Similarity=0.158 Sum_probs=99.7
Q ss_pred EEecCCeEEEEEc--cCCCceeecCcEEEe-cCceeeEEEeee---------ee--eeccc-------ceecCCCcEEEE
Q 037578 4 KVAGASQFLAITG--SGIDDVKLAKKAFIW-PFQQCTVFDITP---------VN--YDFEV-------QAMSAEKLEFKL 62 (506)
Q Consensus 4 ~~~~p~ealVvtg--~g~~rvv~gG~~fvi-P~q~v~~vslr~---------~~--i~~~~-------~~~T~D~v~v~V 62 (506)
+.||.|.+.=|+- .++.||+.|+-.+.+ |=+.++.++|.- .+ +.+.| .+-|+|+.++.+
T Consensus 465 ~~vphn~avqvydyk~~~~Rvv~GP~~v~L~pdE~ftvlsLSgg~PK~~n~i~~l~l~lGPdf~tD~i~vET~DhArL~l 544 (850)
T PTZ00491 465 YKVPHNAAVQLYDYKTKKSRVVFGPDLVMLEPDEEFTVLSLSGGKPKVPNQIHSLHLFLGPDFMTDVIHVETSDHARLAL 544 (850)
T ss_pred EEcCCCcEEEEEEcccCceEEEECCceEEecCCCceEEEEecCCCCCCcchhhhhhhhhCCccceeEEEEEEcccceEEE
Confidence 4577777776644 456788887765444 446666666651 11 11111 257999999999
Q ss_pred eEEEEEecCC--CCHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhhhhccHHHHHhcHH-HHHHHHHHHHHHH--
Q 037578 63 PAVFTIGPRE--DDSDSLLRYAKLIAPKDRNSVHVREIVKGIIEGETRVLAASMTMEEVFKGTK-QFKQEVFGKVQLE-- 137 (506)
Q Consensus 63 ~av~~v~v~~--~d~~~i~~aa~~~~~~~~~~~~i~~~v~~~leg~lR~iig~mtleei~~~R~-~f~~~V~~~~~~d-- 137 (506)
.-.|.|...+ .|+. .+..-|. -++.+...- ..+.+.+|..++++++++.+.+-. -+.+.|+...++.
T Consensus 545 ~LsYnW~F~v~~~d~~---~~~k~Fs----v~DFvGd~C-k~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg~~~e~~~ 616 (850)
T PTZ00491 545 QLSYNWYFDVTDGNPE---DAQKCFS----VPDFVGDAC-KTIASRVRAAVASEPFDEFHKNSAKIIRQAVFGSNDETGE 616 (850)
T ss_pred EEEEEEEEecCCCChh---hHhheec----cCchHHHHH-HHHHHHHHHHHhcCCHHHHhccHHHHHHHHhccCcCCCCc
Confidence 9888887542 2442 2333453 235565554 345788999999999999998644 4455555522222
Q ss_pred ------HhhccceeeeeeecccccCCCchHHHHhh
Q 037578 138 ------LNQFGLVIYNANIKQLVDVPGHEYFSYLG 166 (506)
Q Consensus 138 ------l~~~Gl~I~sv~IkdI~d~~g~~y~~alg 166 (506)
+...||.|.+|-|++|.+-+. ...++|.
T Consensus 617 ~r~~l~F~~N~lvit~VDvqsvEpvD~-~tr~~Lq 650 (850)
T PTZ00491 617 VRDSLRFPANNLVITNVDVQSVEPVDE-RTRDSLQ 650 (850)
T ss_pred cccceEEccCCeEEEEEeeeeeeecCH-HHHHHHH
Confidence 357899999999999998774 4666664
No 28
>PF13421 Band_7_1: SPFH domain-Band 7 family
Probab=98.22 E-value=9.4e-05 Score=71.87 Aligned_cols=156 Identities=10% Similarity=0.117 Sum_probs=111.7
Q ss_pred EEecCCeEEEEEccCCC-ceeecCc-------------------EEEecC-ceeeEEEeeeee-eecccc----ee--cC
Q 037578 4 KVAGASQFLAITGSGID-DVKLAKK-------------------AFIWPF-QQCTVFDITPVN-YDFEVQ----AM--SA 55 (506)
Q Consensus 4 ~~~~p~ealVvtg~g~~-rvv~gG~-------------------~fviP~-q~v~~vslr~~~-i~~~~~----~~--T~ 55 (506)
.+|+|+++.|+.--|+- .+..||. +|.-|| .+|.+++++... +.+-.. .. .-
T Consensus 17 LiV~egQ~Avfv~~G~i~d~~~pG~y~l~T~n~P~l~~l~~~~~Gg~spf~~eVyFvn~~~~~~~kwGT~~pi~~~D~~~ 96 (211)
T PF13421_consen 17 LIVREGQCAVFVNDGKIADVFGPGRYTLDTDNIPILSTLKNWKFGGESPFKAEVYFVNTKEITNIKWGTPNPIPYRDPEY 96 (211)
T ss_pred EEECCCCEEEEEECCEEEEEecCceEEEecCCchHHHHHhhhccCCCCCceEEEEEEECeEecCCccCCCCCeeecCCCC
Confidence 56788888877655531 1112221 233467 788889988653 333211 11 11
Q ss_pred CCcEEEEeEEEEEecCCCCHHHHHHHHHhhccC--CCCHHHHHHHHHHHHHHHHHHhhhh--ccHHHHHhcHHHHHHHHH
Q 037578 56 EKLEFKLPAVFTIGPREDDSDSLLRYAKLIAPK--DRNSVHVREIVKGIIEGETRVLAAS--MTMEEVFKGTKQFKQEVF 131 (506)
Q Consensus 56 D~v~v~V~av~~v~v~~~d~~~i~~aa~~~~~~--~~~~~~i~~~v~~~leg~lR~iig~--mtleei~~~R~~f~~~V~ 131 (506)
..++|...+.|.++| .||..|++ ++.|. .-+.+++...++..+...+-.+++. +++.+|-..-.+|++.++
T Consensus 97 ~~v~lra~G~ys~rI--~Dp~~F~~---~~vg~~~~~~~~~i~~~l~~~i~~~i~~~l~~~~~~~~~i~a~~~eis~~~~ 171 (211)
T PF13421_consen 97 GPVRLRAFGTYSFRI--VDPVLFIR---NLVGTQSEFTTEEINEQLRSEIVQAIADALAESKISILDIPAHLDEISEALK 171 (211)
T ss_pred CcEEEEEEEEEEEEE--eCHHHHHH---hhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 256777788899999 59988874 33332 1246788888888888888888885 788999999999999999
Q ss_pred HHHHHHHhhccceeeeeeecccccCCCchHHHHhh
Q 037578 132 GKVQLELNQFGLVIYNANIKQLVDVPGHEYFSYLG 166 (506)
Q Consensus 132 ~~~~~dl~~~Gl~I~sv~IkdI~d~~g~~y~~alg 166 (506)
+.+.+++..+||+|.++.|.+|+.|+. ..+.|.
T Consensus 172 ~~l~~~~~~~Gi~l~~f~I~~i~~pee--~~~~i~ 204 (211)
T PF13421_consen 172 EKLNPEFERYGIELVDFGIESISFPEE--VQKAID 204 (211)
T ss_pred HHHHHHHHhcCcEEEEEEEEeecCCHH--HHHHHH
Confidence 999999999999999999999999974 555543
No 29
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.04 E-value=0.0014 Score=71.03 Aligned_cols=13 Identities=8% Similarity=-0.079 Sum_probs=6.2
Q ss_pred ceeecCcEEEecC
Q 037578 21 DVKLAKKAFIWPF 33 (506)
Q Consensus 21 rvv~gG~~fviP~ 33 (506)
.++.|.+|...|+
T Consensus 69 ~~v~Pi~q~~~r~ 81 (548)
T COG2268 69 AIVMPIFQTIERM 81 (548)
T ss_pred eEEecceeeeEEe
Confidence 3445555544443
No 30
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=97.75 E-value=0.00046 Score=68.36 Aligned_cols=131 Identities=10% Similarity=0.147 Sum_probs=101.2
Q ss_pred EEEecC-ceeeEEEeeeee-eecc-cce------ecCCCcEEEEeEEEEEecCCCCHHHHHHHHHhhccCCC---CHHHH
Q 037578 28 AFIWPF-QQCTVFDITPVN-YDFE-VQA------MSAEKLEFKLPAVFTIGPREDDSDSLLRYAKLIAPKDR---NSVHV 95 (506)
Q Consensus 28 ~fviP~-q~v~~vslr~~~-i~~~-~~~------~T~D~v~v~V~av~~v~v~~~d~~~i~~aa~~~~~~~~---~~~~i 95 (506)
.|.-|+ +.|.+++++.+. +.+- ++. .-...+++...++|.++| +||-.++.. ..+ ++ +.++|
T Consensus 87 gf~sp~k~eVyfvntqe~~girwGT~qpin~~dn~~~g~l~lRa~Gtys~kv--tDpi~fi~~---I~g-~~dvy~v~di 160 (345)
T COG4260 87 GFESPFKQEVYFVNTQEIKGIRWGTPQPINYFDNFYNGELFLRAHGTYSIKV--TDPILFIQQ---IPG-NRDVYTVDDI 160 (345)
T ss_pred cCCCcccceEEEEecceecceecCCCCCeecccccccceeEEeecceEEEEe--cCHHHHHHh---ccC-CCceEEHHHH
Confidence 456678 899999999776 5552 221 224567788899999999 599766543 322 22 36889
Q ss_pred HHHHHHHHHHHHHHhhhhccHH--HHHhcHHHHHHHHHHHHHHHHhhccceeeeeeecccccCCCchHHHHhh
Q 037578 96 REIVKGIIEGETRVLAASMTME--EVFKGTKQFKQEVFGKVQLELNQFGLVIYNANIKQLVDVPGHEYFSYLG 166 (506)
Q Consensus 96 ~~~v~~~leg~lR~iig~mtle--ei~~~R~~f~~~V~~~~~~dl~~~Gl~I~sv~IkdI~d~~g~~y~~alg 166 (506)
...+..++.+.|-..|+++-.. .+-.+--.++..+.+.+++++..+|+.|++|.|-.|+.|+. .++.+.
T Consensus 161 ~~q~ls~~m~al~tai~q~G~~~~~ltan~~elsk~m~e~Ld~q~~q~Gm~v~sfqvaSisypde--~Q~lin 231 (345)
T COG4260 161 NQQYLSEFMGALATAINQSGVRFSFLTANQMELSKYMAEVLDEQWTQYGMAVDSFQVASISYPDE--SQALIN 231 (345)
T ss_pred HHHHHHHHHHHHHHHHHhcCceehhhhhhHHHHHHHHHHHHhHHHHhhCceEeeEEEEEecCcHH--HHHHHH
Confidence 9999999999999999998653 55568889999999999999999999999999999999984 555443
No 31
>PTZ00121 MAEBL; Provisional
Probab=96.96 E-value=0.91 Score=54.30 Aligned_cols=15 Identities=13% Similarity=-0.037 Sum_probs=7.5
Q ss_pred EEecCCeEEEEEccC
Q 037578 4 KVAGASQFLAITGSG 18 (506)
Q Consensus 4 ~~~~p~ealVvtg~g 18 (506)
.+|||..-|=-+.||
T Consensus 908 tKCPPR~PLkn~kFG 922 (2084)
T PTZ00121 908 EKCPPRFPLKSKSFG 922 (2084)
T ss_pred ccCCCCCCCCCCcee
Confidence 357775554333333
No 32
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=96.68 E-value=0.021 Score=57.16 Aligned_cols=54 Identities=11% Similarity=0.089 Sum_probs=38.8
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhHhhhhHHHH
Q 037578 352 LAADGDLYAKQKEAEGQEALGKAQGEYLKSISTALGGDNRAVKDFLMIDRGVYQEM 407 (506)
Q Consensus 352 ~~Aea~~~~~~aeAeai~~~g~AeAe~~~~~aeA~~~~~~A~~~~~~~~~~~lp~i 407 (506)
++|+.....++|+++...+.++++|+.++.++++|++++..+..++.++. |++|
T Consensus 212 ~ea~~~~~~A~a~~~~~~~~ae~~a~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 265 (266)
T cd03404 212 GEAARIIQEAEAYKEEVIAEAQGEAARFESLLAEYKKAPDVTRERLYLET--MEEV 265 (266)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHH--HHHh
Confidence 34445555566666777777888888899999999998887765666664 5554
No 33
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=96.39 E-value=0.077 Score=54.83 Aligned_cols=65 Identities=14% Similarity=0.131 Sum_probs=38.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhHhhhhHHHHHHHHHHHhhccCCCcEEEeC
Q 037578 353 AADGDLYAKQKEAEGQEALGKAQGEYLKSISTALGGDNRAVKDFLMIDRGVYQEMGRINAEAVRGLQPKLNIWNT 427 (506)
Q Consensus 353 ~Aea~~~~~~aeAeai~~~g~AeAe~~~~~aeA~~~~~~A~~~~~~~~~~~lp~i~~~~a~~~~~i~~ki~i~~~ 427 (506)
++++.++..+|++++...+++++|++.+.+++++.+.+..+..++.++. |. +-+.+. .++-|++.
T Consensus 244 ~~e~~~~~aeA~a~a~~~~Aegea~a~~~~~~a~~~~p~~~~~~~~le~--~~-------~~~~~~-~~~~vl~~ 308 (317)
T TIGR01932 244 EYEVRKILSEAYRTARIIKGEGDAEAAKIYSDAYGKDPEFYSFWRSLEA--YE-------KSFKDN-QDEKVLST 308 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHccCHHHHHHHHHHHH--HH-------HHhCCC-CCEEEECC
Confidence 3344444444455555555556668888999999998876664454442 33 234343 45666654
No 34
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=96.32 E-value=0.074 Score=53.14 Aligned_cols=40 Identities=8% Similarity=0.062 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhHh
Q 037578 361 KQKEAEGQEALGKAQGEYLKSISTALGGDNRAVKDFLMID 400 (506)
Q Consensus 361 ~~aeAeai~~~g~AeAe~~~~~aeA~~~~~~A~~~~~~~~ 400 (506)
++|++++....++++|+++..++++|.+.+..+..++.++
T Consensus 194 Aea~~~~~~~~a~g~a~~~~~~~~ay~~~p~~~~~~~~le 233 (261)
T TIGR01933 194 ARGYKERRINRAKGDVARFTKLLAEYKKAPDVTRERLYLE 233 (261)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 3344445555566666778888888988887776555444
No 35
>PTZ00121 MAEBL; Provisional
Probab=96.22 E-value=4.3 Score=48.97 Aligned_cols=13 Identities=8% Similarity=0.095 Sum_probs=6.6
Q ss_pred HHHHhhhhhhhHH
Q 037578 161 YFSYLGQKTQMEA 173 (506)
Q Consensus 161 y~~alg~~~~A~~ 173 (506)
|-++.|+-..+..
T Consensus 1093 ~~~~~~~~e~~r~ 1105 (2084)
T PTZ00121 1093 TEEAFGKAEEAKK 1105 (2084)
T ss_pred hHHHhhhHHHhhh
Confidence 5555555444433
No 36
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=95.64 E-value=0.13 Score=50.50 Aligned_cols=42 Identities=19% Similarity=0.201 Sum_probs=29.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 037578 353 AADGDLYAKQKEAEGQEALGKAQGEYLKSISTALGGDNRAVK 394 (506)
Q Consensus 353 ~Aea~~~~~~aeAeai~~~g~AeAe~~~~~aeA~~~~~~A~~ 394 (506)
++++....++|+|++...+++++|++++.+++++.++++.+.
T Consensus 189 ~~~~~~~~Aea~a~a~~~~a~gea~a~~~~~~a~~~~p~~~~ 230 (242)
T cd03405 189 DRERTVILAEAYREAQEIRGEGDAEAARIYAEAYGKDPEFYA 230 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCHHHHH
Confidence 334444455556666667777777888888999998887654
No 37
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=95.41 E-value=0.31 Score=50.77 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhHh
Q 037578 361 KQKEAEGQEALGKAQGEYLKSISTALGGDNRAVKDFLMID 400 (506)
Q Consensus 361 ~~aeAeai~~~g~AeAe~~~~~aeA~~~~~~A~~~~~~~~ 400 (506)
.+|++++....|+++|++.+.++++|.+.++-+..+..|+
T Consensus 262 AeA~~~a~i~~aegeA~a~~~~~~a~~~~p~~~~~~~~le 301 (334)
T PRK11029 262 AEAERQGRIMRGEGDAEAAKLFADAFSQDPDFYAFIRSLR 301 (334)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3344444555566666888899999998887554333333
No 38
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=95.22 E-value=0.62 Score=49.99 Aligned_cols=40 Identities=10% Similarity=0.169 Sum_probs=24.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhHhhhhHHHHHHHHHHHhhccCCCcEEEeC
Q 037578 377 EYLKSISTALGGDNRAVKDFLMIDRGVYQEMGRINAEAVRGLQPKLNIWNT 427 (506)
Q Consensus 377 e~~~~~aeA~~~~~~A~~~~~~~~~~~lp~i~~~~a~~~~~i~~ki~i~~~ 427 (506)
+...++..+|.+.++-..+.|.|+. |.+ -|++. +|| |+|.
T Consensus 306 ~rF~~i~~~Y~kaP~vtr~RlYlet--me~-------vl~~~-~kv-ivd~ 345 (419)
T PRK10930 306 ARFAKLLPEYKAAPEITRERLYIET--MEK-------VLGHT-RKV-LVND 345 (419)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHH--HHH-------HHccC-CEE-EEeC
Confidence 4555666688888876665566663 343 34566 675 6665
No 39
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=94.65 E-value=1 Score=45.03 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 037578 354 ADGDLYAKQKEAEGQEALGKAQGEYLKSISTALGG 388 (506)
Q Consensus 354 Aea~~~~~~aeAeai~~~g~AeAe~~~~~aeA~~~ 388 (506)
|++...+++++|++.+...+++++.+..+.++++.
T Consensus 181 a~a~~~~Aeg~a~a~~~~A~g~~~~~~~~~~~~~~ 215 (262)
T cd03407 181 AEAKRLQGVGAAEQRQAIADGLRESILSLADAVPG 215 (262)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444555566666666666788888877743
No 40
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=91.81 E-value=2 Score=43.08 Aligned_cols=102 Identities=16% Similarity=0.195 Sum_probs=64.6
Q ss_pred Eeeeeeeecccc-eecCCCcEEEEeEEEEEecCCCCHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhhhhccHHH
Q 037578 40 DITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGPREDDSDSLLRYAKLIAPKDRNSVHVREIVKGIIEGETRVLAASMTMEE 118 (506)
Q Consensus 40 slr~~~i~~~~~-~~T~D~v~v~V~av~~v~v~~~d~~~i~~aa~~~~~~~~~~~~i~~~v~~~leg~lR~iig~mtlee 118 (506)
|..|..++.|.- .+.+|++.+.+.+.+++|- |-+.+ .+| -.++-|-.. +-+|-+-.+=+.-+-.+
T Consensus 121 SVnPkVI~~P~i~aVAkdGIql~~kArVTVRa---Ni~rL------VGG--AgEeTIiAR---VGEgIVttiGSa~~hk~ 186 (316)
T PF12127_consen 121 SVNPKVIDTPTIAAVAKDGIQLKVKARVTVRA---NIDRL------VGG--AGEETIIAR---VGEGIVTTIGSAESHKE 186 (316)
T ss_pred ccCCeeecCcchhhhhcCCeEEEEEEEEEEEe---cHHHh------ccC--CCcHHHHHH---HccceeeeeccchhHHH
Confidence 333443343322 5789999999999999995 44322 333 234444444 44566666666677789
Q ss_pred HHhcHHHHHHHHHHHHHHHHhhccceeeeeeecccccCC
Q 037578 119 VFKGTKQFKQEVFGKVQLELNQFGLVIYNANIKQLVDVP 157 (506)
Q Consensus 119 i~~~R~~f~~~V~~~~~~dl~~~Gl~I~sv~IkdI~d~~ 157 (506)
++.+-+.+...|.+. .--..--++|.|+.|-||+--.
T Consensus 187 VLEnPd~ISk~VL~k--gLDagTAFeIlSIDIaDidVG~ 223 (316)
T PF12127_consen 187 VLENPDSISKTVLEK--GLDAGTAFEILSIDIADIDVGE 223 (316)
T ss_pred HhcCHHHHHHHHHhh--CCCcCceeEEEEeeeeccccch
Confidence 999999999887653 1112334678888888887543
No 41
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=91.46 E-value=18 Score=37.00 Aligned_cols=7 Identities=0% Similarity=0.031 Sum_probs=2.9
Q ss_pred HHHHHHh
Q 037578 447 EVAGIYR 453 (506)
Q Consensus 447 ~v~~~~~ 453 (506)
.++.+..
T Consensus 301 ~i~~Yag 307 (387)
T COG3064 301 DIDQYAG 307 (387)
T ss_pred hHHHHHH
Confidence 3444444
No 42
>PTZ00491 major vault protein; Provisional
Probab=85.27 E-value=42 Score=39.02 Aligned_cols=40 Identities=25% Similarity=0.161 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 037578 339 KKATAEAEFYARKLAADGDLYAKQKEAEGQEALGKAQGEY 378 (506)
Q Consensus 339 ~~~~AeA~~~~~~~~Aea~~~~~~aeAeai~~~g~AeAe~ 378 (506)
...+++|....++-+|+|.++...+|-+..+.+.++|-+.
T Consensus 728 ~~ie~e~~v~~a~lra~a~~i~~~ael~~~~~~~~~e~~~ 767 (850)
T PTZ00491 728 RLIEAEAEVEQAELRAKALRIEAEAELEKLRKRQELELEY 767 (850)
T ss_pred HhhhhhhHHHHHHhhhHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3344444444444445554444444444444444444433
No 43
>PRK13665 hypothetical protein; Provisional
Probab=83.34 E-value=7.1 Score=39.08 Aligned_cols=101 Identities=18% Similarity=0.224 Sum_probs=63.0
Q ss_pred Eeeeeeeecccc-eecCCCcEEEEeEEEEEecCCCCHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhhhhccHHH
Q 037578 40 DITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGPREDDSDSLLRYAKLIAPKDRNSVHVREIVKGIIEGETRVLAASMTMEE 118 (506)
Q Consensus 40 slr~~~i~~~~~-~~T~D~v~v~V~av~~v~v~~~d~~~i~~aa~~~~~~~~~~~~i~~~v~~~leg~lR~iig~mtlee 118 (506)
|..|..++.|.- .+.+|++.+.+.+-++||- |-+.+ .+| -.++-|-..+ =+|-+-++=++-+-.+
T Consensus 126 SVnPkVI~~P~i~aVAkdGIql~~kARVTVRa---Ni~rL------VGG--AgEeTIiARV---GEgIVttIGSa~~hk~ 191 (316)
T PRK13665 126 SVNPKVIETPFIAAVAKDGIEVKAKARVTVRA---NIDRL------VGG--AGEETIIARV---GEGIVSTIGSSESHKE 191 (316)
T ss_pred ccCCeeecCCcchhhcccCeEEEEEEEEEeeh---hHHHH------hCC--CcceeeEeee---cCceeecccCcchHHH
Confidence 334444444332 5789999999999999984 44322 232 2233333333 3566666666677789
Q ss_pred HHhcHHHHHHHHHHHHHHHHh-hccceeeeeeecccccCC
Q 037578 119 VFKGTKQFKQEVFGKVQLELN-QFGLVIYNANIKQLVDVP 157 (506)
Q Consensus 119 i~~~R~~f~~~V~~~~~~dl~-~~Gl~I~sv~IkdI~d~~ 157 (506)
++.+-+.++..|.. +-|+ .--++|.|+.|-||+--.
T Consensus 192 VLEnPd~ISk~VL~---kGLDagTAFeIlSIDIADvdVG~ 228 (316)
T PRK13665 192 VLENPDSISKTVLS---KGLDAGTAFEILSIDIADVDVGK 228 (316)
T ss_pred HhcCHHHHHHHHHh---ccCCcCceeEEEEEeeeccccch
Confidence 99999999876643 3232 334678888888887543
No 44
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []. This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.
Probab=80.23 E-value=10 Score=33.40 Aligned_cols=98 Identities=17% Similarity=0.179 Sum_probs=64.3
Q ss_pred eecCCCcEEEEeEEEEEecCCCCHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhhhhccHHHHHhcHHHHHHHHH
Q 037578 52 AMSAEKLEFKLPAVFTIGPREDDSDSLLRYAKLIAPKDRNSVHVREIVKGIIEGETRVLAASMTMEEVFKGTKQFKQEVF 131 (506)
Q Consensus 52 ~~T~D~v~v~V~av~~v~v~~~d~~~i~~aa~~~~~~~~~~~~i~~~v~~~leg~lR~iig~mtleei~~~R~~f~~~V~ 131 (506)
+-|+|.-++.+.-.|.|.... |+.....+..-|. =++.|...-+ .|.+.+|..+++.+.++.+.+-..+.....
T Consensus 11 VET~DhArL~L~LsYnw~F~v-~~~~~~~~~k~F~----VpDFVGd~Ck-~iaSRIR~aVa~~~Fd~FHknSa~iiR~aV 84 (118)
T PF11978_consen 11 VETADHARLQLQLSYNWHFDV-DRKDPEDAAKLFS----VPDFVGDACK-AIASRIRGAVASVTFDDFHKNSARIIRQAV 84 (118)
T ss_dssp EE-TT-EEEEEEEEEEEEE---TTTHHHHHHHTTS----STTHHHHHHH-HHHHHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred EeecccceeeEEEEEEEEEec-CCCChhHHHHhcC----CcchHHHHHH-HHHHHHHHHHhcCcHHHHcccHHHHHHHHh
Confidence 679999999999888888652 4444444444453 2466666554 457889999999999999986555443322
Q ss_pred HHHH------H--HHhhccceeeeeeeccccc
Q 037578 132 GKVQ------L--ELNQFGLVIYNANIKQLVD 155 (506)
Q Consensus 132 ~~~~------~--dl~~~Gl~I~sv~IkdI~d 155 (506)
=-.. + -+...||.|.++-|++|.+
T Consensus 85 Fg~~~~~~~r~~~~F~~N~LvIt~vDvqsvEp 116 (118)
T PF11978_consen 85 FGFDENGEVRDGLRFPANNLVITSVDVQSVEP 116 (118)
T ss_dssp STS---E--SS-EEETTTTEEEEEEEEEEEEE
T ss_pred cCCCCCCCccceeEEcCCCeEEEEEeeeEecc
Confidence 1111 1 1347899999999998875
No 45
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=78.87 E-value=20 Score=36.23 Aligned_cols=22 Identities=27% Similarity=0.367 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCH
Q 037578 369 EALGKAQGEYLKSISTALGGDN 390 (506)
Q Consensus 369 ~~~g~AeAe~~~~~aeA~~~~~ 390 (506)
+..+.|+++..+.+..++....
T Consensus 225 ~~~~~a~~~~~~~~~~~~~~~~ 246 (291)
T COG0330 225 EVIARAEADAAKIIAAALREAP 246 (291)
T ss_pred HHHHhhccHHHHHHHhhccccc
Confidence 3445555555556666666644
No 46
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=73.34 E-value=57 Score=32.83 Aligned_cols=28 Identities=21% Similarity=0.113 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 037578 361 KQKEAEGQEALGKAQGEYLKSISTALGG 388 (506)
Q Consensus 361 ~~aeAeai~~~g~AeAe~~~~~aeA~~~ 388 (506)
...||++|.++..+-+.++.+++..|.+
T Consensus 213 a~Gea~ail~~A~a~a~~~a~~~~~l~~ 240 (301)
T KOG2620|consen 213 ADGEAEAILAFADAVAGTSAKLVMDLKQ 240 (301)
T ss_pred HhhHHHHHHHHhhcccchHHHHHHHHHH
Confidence 3456777888888878888888777764
No 47
>PRK13665 hypothetical protein; Provisional
Probab=68.54 E-value=14 Score=37.05 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=22.9
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHH
Q 037578 361 KQKEAEGQEAL-GKAQGEYLKSISTALGGDNRAVKDFL 397 (506)
Q Consensus 361 ~~aeAeai~~~-g~AeAe~~~~~aeA~~~~~~A~~~~~ 397 (506)
++|..+-.|++ -+|||+.=.++++||....-...+|.
T Consensus 264 mkA~v~emrAkvVeAeaeVP~Ama~A~r~G~lGvmDYy 301 (316)
T PRK13665 264 MKAKVQEMRAKVVEAEAEVPLAMAEALRSGNLGVMDYY 301 (316)
T ss_pred HHHHHHHHHHHhhhhhhhchHHHHHHHHcCCCchhhhh
Confidence 33444444443 67888999999999986432233354
No 48
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=67.71 E-value=41 Score=34.25 Aligned_cols=15 Identities=60% Similarity=0.603 Sum_probs=6.3
Q ss_pred hhHHHHHHHHHHHHH
Q 037578 314 ANWELYQKQKEAEAI 328 (506)
Q Consensus 314 AeA~~~~~~~~AeA~ 328 (506)
|||+.|...+.|||.
T Consensus 240 ~~~~~~~~~~~~~~~ 254 (280)
T cd03406 240 ADAEYYTAQKEAEAN 254 (280)
T ss_pred cCHHHHHHHHHHhhc
Confidence 444444444444433
No 49
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=63.72 E-value=15 Score=37.12 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHH
Q 037578 360 AKQKEAEGQEAL-GKAQGEYLKSISTALGGDNRAVKDFL 397 (506)
Q Consensus 360 ~~~aeAeai~~~-g~AeAe~~~~~aeA~~~~~~A~~~~~ 397 (506)
+++|+.+-.|++ -+|||+.=.++++||....=...+|.
T Consensus 258 Em~A~vqe~rAkvVeAeaevP~A~aeAfr~G~lGvmDYy 296 (316)
T PF12127_consen 258 EMKAKVQEMRAKVVEAEAEVPLAMAEAFRSGNLGVMDYY 296 (316)
T ss_pred HHHHHHHHHHhHheehhhhchHHHHHHHHcCCCcchhhh
Confidence 344444445544 57888888999999987432344443
No 50
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]
Probab=55.07 E-value=1.5e+02 Score=29.38 Aligned_cols=8 Identities=0% Similarity=-0.006 Sum_probs=3.5
Q ss_pred CcEEEEeE
Q 037578 57 KLEFKLPA 64 (506)
Q Consensus 57 ~v~v~V~a 64 (506)
++|--.++
T Consensus 73 nvPCGTsG 80 (322)
T KOG2962|consen 73 NVPCGTSG 80 (322)
T ss_pred cCCCCCCC
Confidence 44444443
No 51
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=52.70 E-value=2.9e+02 Score=28.68 Aligned_cols=11 Identities=9% Similarity=-0.091 Sum_probs=5.2
Q ss_pred chHHHHHHHHh
Q 037578 443 SAVREVAGIYR 453 (506)
Q Consensus 443 ~~~~~v~~~~~ 453 (506)
.+.+|...|..
T Consensus 301 ~i~~Yag~ik~ 311 (387)
T COG3064 301 DIDQYAGQIKS 311 (387)
T ss_pred hHHHHHHHHHH
Confidence 44555444443
No 52
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=52.54 E-value=1.3e+02 Score=28.80 Aligned_cols=6 Identities=50% Similarity=0.534 Sum_probs=2.5
Q ss_pred CCcEEE
Q 037578 420 PKLNIW 425 (506)
Q Consensus 420 ~ki~i~ 425 (506)
+++.|+
T Consensus 119 ~~~~I~ 124 (198)
T PRK01558 119 DKLEII 124 (198)
T ss_pred CCeeEE
Confidence 344444
No 53
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=50.43 E-value=2.4e+02 Score=27.36 Aligned_cols=6 Identities=0% Similarity=-0.092 Sum_probs=2.6
Q ss_pred HHHHHh
Q 037578 410 INAEAV 415 (506)
Q Consensus 410 ~~a~~~ 415 (506)
.+++.|
T Consensus 151 ~~~~~l 156 (207)
T PRK01005 151 EVTKKL 156 (207)
T ss_pred HHHHHH
Confidence 334444
No 54
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=49.81 E-value=45 Score=31.07 Aligned_cols=50 Identities=18% Similarity=0.255 Sum_probs=40.6
Q ss_pred HHHHHHHhhhhccHHHHHh--cHHHHHHHHHHHHHHHHhhccceeeeeeeccc
Q 037578 103 IEGETRVLAASMTMEEVFK--GTKQFKQEVFGKVQLELNQFGLVIYNANIKQL 153 (506)
Q Consensus 103 leg~lR~iig~mtleei~~--~R~~f~~~V~~~~~~dl~~~Gl~I~sv~IkdI 153 (506)
+...++.++++.|.+++.+ .++++..++++.++.-|..=| .|.+|-++++
T Consensus 105 vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~~g~-~V~dV~fT~f 156 (159)
T COG1580 105 VRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILKEGQ-VVKDVLFTNF 156 (159)
T ss_pred HHHHHHHHHHhCCHHHhcCchhHHHHHHHHHHHHHHHHhcCC-eeEEEeeehh
Confidence 4556799999999999988 599999999999999998744 5555555544
No 55
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.59 E-value=4.6e+02 Score=30.62 Aligned_cols=12 Identities=33% Similarity=0.714 Sum_probs=7.1
Q ss_pred HHHHHhhccCCC
Q 037578 79 LRYAKLIAPKDR 90 (506)
Q Consensus 79 ~~aa~~~~~~~~ 90 (506)
++|.+.|..+++
T Consensus 195 lKY~QlFNa~Dk 206 (1118)
T KOG1029|consen 195 LKYRQLFNALDK 206 (1118)
T ss_pred hHHHHHhhhccc
Confidence 467777765443
No 56
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []. FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body
Probab=43.21 E-value=73 Score=26.33 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=38.4
Q ss_pred HHHHHHHhhhhccHHHHHh--cHHHHHHHHHHHHHHHHhhccceeeeeeeccc
Q 037578 103 IEGETRVLAASMTMEEVFK--GTKQFKQEVFGKVQLELNQFGLVIYNANIKQL 153 (506)
Q Consensus 103 leg~lR~iig~mtleei~~--~R~~f~~~V~~~~~~dl~~~Gl~I~sv~IkdI 153 (506)
+...+-..++++|.+++.. .++.+..++.+.++..|.+ -.|.+|-++++
T Consensus 46 ird~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~~l~~--~~V~~V~ft~f 96 (99)
T PF03748_consen 46 IRDAIISYLSSKTAEDLSGPEGKERLKDELKDRINKILGK--GKVKDVYFTDF 96 (99)
T ss_pred HHHHHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHHhhcc--CcEEEEEEEEE
Confidence 4456678889999999985 6999999999999999854 23677766654
No 57
>PF06713 bPH_4: Bacterial PH domain; InterPro: IPR009589 This entry is represented by Bacteriophage SP-beta, YolF. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical proteins specific to Oceanobacillus and Bacillus species. Members of this family are typically around 130 residues in length. The function of this family is unknown.
Probab=36.48 E-value=1.7e+02 Score=23.27 Aligned_cols=64 Identities=16% Similarity=0.183 Sum_probs=36.1
Q ss_pred EEecCCeEEEEEccCCCceeecCcEEEecCceeeEEEeeeeeeecccceecCCCcEEEEe--EEEEEecCCCCHHHHHH
Q 037578 4 KVAGASQFLAITGSGIDDVKLAKKAFIWPFQQCTVFDITPVNYDFEVQAMSAEKLEFKLP--AVFTIGPREDDSDSLLR 80 (506)
Q Consensus 4 ~~~~p~ealVvtg~g~~rvv~gG~~fviP~q~v~~vslr~~~i~~~~~~~T~D~v~v~V~--av~~v~v~~~d~~~i~~ 80 (506)
+++.++...|..||.+ +.+|+..+..+.-..- .+...+.+.|.+.+.-. -.+.+.| .|.+.|..
T Consensus 3 Y~i~~~~L~I~~G~~~---------~~I~i~~I~~I~~~~~--~~~~~a~S~~rl~I~y~~~~~i~IsP--~~~~~FI~ 68 (74)
T PF06713_consen 3 YIIEDDYLIIKCGFFK---------KKIPIEDIRSIRPTKN--PLSSPALSLDRLEIYYGKYKSILISP--KDKEEFIA 68 (74)
T ss_pred EEEeCCEEEEEECCcc---------cEEEhHHccEEEecCC--ccccccccccEEEEEECCCCEEEEEC--CCHHHHHH
Confidence 3446666667777654 4577755554433211 11122677788877765 3366666 47766654
No 58
>COG1871 CheD Chemotaxis protein; stimulates methylation of MCP proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=29.79 E-value=60 Score=30.27 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=19.0
Q ss_pred EEEecCCeEEEEEccCC--------CceeecCc-EEEecC
Q 037578 3 YKVAGASQFLAITGSGI--------DDVKLAKK-AFIWPF 33 (506)
Q Consensus 3 y~~~~p~ealVvtg~g~--------~rvv~gG~-~fviP~ 33 (506)
|+++.....++.||+|+ +..-.+|. ||.+|.
T Consensus 17 ~~v~~~p~~i~ttgLGSCV~v~l~D~~~~vgGm~H~mLP~ 56 (164)
T COG1871 17 YKVTKDPDVIITTGLGSCVGVCLRDPVNGVGGMNHFMLPD 56 (164)
T ss_pred EEEecCCCEEEEecccceEEEEEEccccCccceeEEeccC
Confidence 44444446667788875 12225665 899996
No 59
>COG4864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.79 E-value=1.2e+02 Score=29.66 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHH
Q 037578 372 GKAQGEYLKSISTALGGDNRAVKDFL 397 (506)
Q Consensus 372 g~AeAe~~~~~aeA~~~~~~A~~~~~ 397 (506)
-+||||.-.++++|+....-...+|+
T Consensus 275 veaeaevp~als~alr~gnigvmdy~ 300 (328)
T COG4864 275 VEAEAEVPLALSEALREGNIGVMDYY 300 (328)
T ss_pred HHhhccccHHHHHHHHhCCchhhhhh
Confidence 56777888888888877544344454
No 60
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=25.65 E-value=5.6e+02 Score=24.02 Aligned_cols=9 Identities=0% Similarity=0.032 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 037578 405 QEMGRINAE 413 (506)
Q Consensus 405 p~i~~~~a~ 413 (506)
.+++..+..
T Consensus 152 ~~lA~~i~~ 160 (181)
T PRK13454 152 KDTAEALVA 160 (181)
T ss_pred HHHHHHHHH
Confidence 334443333
No 61
>PRK06328 type III secretion system protein; Validated
Probab=24.13 E-value=6.8e+02 Score=24.43 Aligned_cols=6 Identities=17% Similarity=0.296 Sum_probs=3.2
Q ss_pred CCcEEE
Q 037578 420 PKLNIW 425 (506)
Q Consensus 420 ~ki~i~ 425 (506)
.+|+|.
T Consensus 132 ~~v~I~ 137 (223)
T PRK06328 132 KRIIIH 137 (223)
T ss_pred CceEEE
Confidence 456653
No 62
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=24.13 E-value=2.7e+02 Score=25.19 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=35.9
Q ss_pred HHHHhhhhccHHHHHh--cHHHHHHHHHHHHHHHHhhccceeeeeeeccc
Q 037578 106 ETRVLAASMTMEEVFK--GTKQFKQEVFGKVQLELNQFGLVIYNANIKQL 153 (506)
Q Consensus 106 ~lR~iig~mtleei~~--~R~~f~~~V~~~~~~dl~~~Gl~I~sv~IkdI 153 (506)
.+=..+++++.+++.+ .|+.+.+++.+.++.-|.+ | .|.+|-++++
T Consensus 92 ~ii~~L~~~~~~~l~~~~G~~~Lr~el~~~in~~l~~-g-~V~~Vyft~f 139 (142)
T PRK07718 92 IIIEELADMNAEDFKGKKGLEALKEQLKEKINNLMQE-G-KVEKVYITSF 139 (142)
T ss_pred HHHHHHHcCCHHHhcChhHHHHHHHHHHHHHHHhhcc-C-ceEEEEEEee
Confidence 3456778899999986 6999999999999988876 4 5666666553
No 63
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=24.05 E-value=5.7e+02 Score=23.50 Aligned_cols=48 Identities=13% Similarity=0.122 Sum_probs=35.3
Q ss_pred HHHHhhhhccHHHHHh--cHHHHHHHHHHHHHHHHhhcc--ceeeeeeeccc
Q 037578 106 ETRVLAASMTMEEVFK--GTKQFKQEVFGKVQLELNQFG--LVIYNANIKQL 153 (506)
Q Consensus 106 ~lR~iig~mtleei~~--~R~~f~~~V~~~~~~dl~~~G--l~I~sv~IkdI 153 (506)
.+=.++++.+.+++.+ .++.+.+++.+.++.-|..-+ -.|.+|-++++
T Consensus 108 ~ii~~Ls~k~~~~L~~~eGk~~Lk~ei~~~in~~l~~~~~~~~V~~VlFt~f 159 (162)
T PRK07021 108 RLLLLLSRKHAAELATEEGKQKLAAEIKQTLSQPLVPGQPPQVVTDVLFTAF 159 (162)
T ss_pred HHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHhccCCCCceeEEeeeec
Confidence 3455678999999976 699999999999998886532 24566655543
No 64
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=22.48 E-value=7.1e+02 Score=24.09 Aligned_cols=8 Identities=13% Similarity=0.497 Sum_probs=3.9
Q ss_pred cCCCchhh
Q 037578 466 TGMTPPPY 473 (506)
Q Consensus 466 tGidl~~~ 473 (506)
-|+.+...
T Consensus 159 ~gv~~~~~ 166 (207)
T PRK01005 159 KGVSVGSF 166 (207)
T ss_pred cCeEEecc
Confidence 35555543
Done!