Query 037578
Match_columns 506
No_of_seqs 262 out of 1749
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 23:50:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037578.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037578hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1win_A Flotillin 2; BAND 7 dom 99.9 2.6E-26 9E-31 207.9 9.9 137 33-174 4-141 (143)
2 3bk6_A PH stomatin; archaea, t 99.9 1E-21 3.5E-26 185.4 15.2 147 34-194 4-151 (188)
3 4fvg_A Stomatin; mixed alpha-b 99.8 1.7E-20 5.8E-25 167.6 13.3 128 28-169 2-131 (133)
4 2rpb_A Hypothetical membrane p 99.7 1.3E-16 4.5E-21 137.9 10.1 109 37-157 3-112 (113)
5 2zuo_A MVP, major vault protei 98.9 2.2E-06 7.5E-11 94.5 34.0 157 4-166 460-655 (861)
6 2zuo_A MVP, major vault protei 91.8 15 0.0005 41.1 21.0 39 351-389 765-805 (861)
7 3v6i_B V-type ATP synthase, su 86.1 9.2 0.00032 31.5 10.7 6 389-394 92-97 (105)
8 3p8c_D Wiskott-aldrich syndrom 19.6 23 0.00078 34.6 -0.0 13 445-457 201-213 (279)
9 2pk2_A Cyclin-T1, protein TAT; 17.2 28 0.00096 35.1 0.0 21 426-446 283-303 (358)
10 2l6f_A Focal adhesion kinase 1 21.2 30 0.001 32.2 0.0 8 445-452 203-210 (215)
No 1
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=99.93 E-value=2.6e-26 Score=207.89 Aligned_cols=137 Identities=17% Similarity=0.277 Sum_probs=126.6
Q ss_pred CceeeEEEeeeeeeecccc-eecCCCcEEEEeEEEEEecCCCCHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhh
Q 037578 33 FQQCTVFDITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGPREDDSDSLLRYAKLIAPKDRNSVHVREIVKGIIEGETRVLA 111 (506)
Q Consensus 33 ~q~v~~vslr~~~i~~~~~-~~T~D~v~v~V~av~~v~v~~~d~~~i~~aa~~~~~~~~~~~~i~~~v~~~leg~lR~ii 111 (506)
+|++.++|+|+++++++++ ++|+|+++|.||++++|+|. +||..++.++++|++ .+...+..++.++++++||+++
T Consensus 4 i~~v~~vdlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~-dd~~~~~~a~~~~~~--~~~~~~~~~l~~~~~~~LR~vi 80 (143)
T 1win_A 4 GSSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIM-TEKELLAVACEQFLG--KNVQDIKNVVLQTLEGHLRSIL 80 (143)
T ss_dssp CCCCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEEC-CCSSCCHHHHHHHSS--SCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEECceEEEeCCcceeEcCCCCEEEEEEEEEEEEC-CCHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999999999988 89999999999999999995 478888888888753 4568899999999999999999
Q ss_pred hhccHHHHHhcHHHHHHHHHHHHHHHHhhccceeeeeeecccccCCCchHHHHhhhhhhhHHH
Q 037578 112 ASMTMEEVFKGTKQFKQEVFGKVQLELNQFGLVIYNANIKQLVDVPGHEYFSYLGQKTQMEAA 174 (506)
Q Consensus 112 g~mtleei~~~R~~f~~~V~~~~~~dl~~~Gl~I~sv~IkdI~d~~g~~y~~alg~~~~A~~~ 174 (506)
|+|||+|++++|+.|+..|++.++.++.+|||+|.+|+|+||++|++ |+++||+++.|+++
T Consensus 81 G~~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~--~~~am~~~~~Ae~~ 141 (143)
T 1win_A 81 GTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVD--YLSSLGKTQTSGPS 141 (143)
T ss_dssp HHSCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTC--HHHHHCCCCCCCCC
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHH--HHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999997 99999999888754
No 2
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=99.87 E-value=1e-21 Score=185.41 Aligned_cols=147 Identities=14% Similarity=0.230 Sum_probs=129.1
Q ss_pred ceeeEEEeeeeeeecccc-eecCCCcEEEEeEEEEEecCCCCHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhhh
Q 037578 34 QQCTVFDITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGPREDDSDSLLRYAKLIAPKDRNSVHVREIVKGIIEGETRVLAA 112 (506)
Q Consensus 34 q~v~~vslr~~~i~~~~~-~~T~D~v~v~V~av~~v~v~~~d~~~i~~aa~~~~~~~~~~~~i~~~v~~~leg~lR~iig 112 (506)
+++.++|+++++++++++ ++|+|+++|+|+++++|+|. ||..++ ..+. + ....+..++++.||+++|
T Consensus 4 ~~v~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~--dp~~~~---~~v~----~---~~~~i~~~~~~~lR~vig 71 (188)
T 3bk6_A 4 EKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVV--DPVKAV---TQVK----N---YIMATSQISQTTLRSVIG 71 (188)
T ss_dssp EECCCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEES--CHHHHH---HSSS----C---HHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEEC--CHHHHH---HHhc----C---HHHHHHHHHHHHHHHHHc
Confidence 888899999999999886 89999999999999999994 887554 2221 2 334566778899999999
Q ss_pred hccHHHHHhcHHHHHHHHHHHHHHHHhhccceeeeeeecccccCCCchHHHHhhhhhhhHHHhHhHHHHHHHHhhhhHHH
Q 037578 113 SMTMEEVFKGTKQFKQEVFGKVQLELNQFGLVIYNANIKQLVDVPGHEYFSYLGQKTQMEAANQAKVDVAEARMKGEVGA 192 (506)
Q Consensus 113 ~mtleei~~~R~~f~~~V~~~~~~dl~~~Gl~I~sv~IkdI~d~~g~~y~~alg~~~~A~~~~~A~i~~Aeaer~~~i~~ 192 (506)
+||+++++++|+.|+..|++.+.+.+.+|||.|.+|+|++|++|++ |.++|+.+..|++.++|.+..|++++++....
T Consensus 72 ~~~l~ell~~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~e--v~~a~~~~~~Aere~~A~i~~Aege~~a~~~~ 149 (188)
T 3bk6_A 72 QAHLDELLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAG--MQKAMARQAEAERERRARITLAEAERQAAEKL 149 (188)
T ss_dssp TSCHHHHHHCHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHhhHHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 99999999999999999999999987765544
Q ss_pred HH
Q 037578 193 KL 194 (506)
Q Consensus 193 ae 194 (506)
++
T Consensus 150 a~ 151 (188)
T 3bk6_A 150 RE 151 (188)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 3
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=99.84 E-value=1.7e-20 Score=167.63 Aligned_cols=128 Identities=8% Similarity=0.167 Sum_probs=96.5
Q ss_pred EEEecC-ceeeEEEeeeeeeecccc-eecCCCcEEEEeEEEEEecCCCCHHHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Q 037578 28 AFIWPF-QQCTVFDITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGPREDDSDSLLRYAKLIAPKDRNSVHVREIVKGIIEG 105 (506)
Q Consensus 28 ~fviP~-q~v~~vslr~~~i~~~~~-~~T~D~v~v~V~av~~v~v~~~d~~~i~~aa~~~~~~~~~~~~i~~~v~~~leg 105 (506)
.++.|| +++.++|+|.++++++++ ++|+|+++|.|+++++|+| .||..++ .++ +.....+..++++
T Consensus 2 ~l~~P~id~v~~vd~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yrI--~Dp~~~~---~~v-------~~~~~~l~~~~~~ 69 (133)
T 4fvg_A 2 PLGSPSTDSAAKVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRV--QNATLAV---ANI-------TNADSATRLLAQT 69 (133)
T ss_dssp ------------CCCSCEEEEEEEEEEECTTCCEEEEEEEEEEEE--SCHHHHH---HSS-------SCHHHHHHHHHHH
T ss_pred CCCCCceeEEEEEEeEEEEecCCCeEEEeCCCCEEEEEEEEEEEE--eehHHhH---hhh-------hhHHHHHHHHHHH
Confidence 378899 999999999999999887 9999999999999999999 4886543 233 2245566677889
Q ss_pred HHHHhhhhccHHHHHhcHHHHHHHHHHHHHHHHhhccceeeeeeecccccCCCchHHHHhhhhh
Q 037578 106 ETRVLAASMTMEEVFKGTKQFKQEVFGKVQLELNQFGLVIYNANIKQLVDVPGHEYFSYLGQKT 169 (506)
Q Consensus 106 ~lR~iig~mtleei~~~R~~f~~~V~~~~~~dl~~~Gl~I~sv~IkdI~d~~g~~y~~alg~~~ 169 (506)
.||+++|++++++++++|++++..+++.++..+.+||++|.+|+|+||++|.. +.++|....
T Consensus 70 ~lR~vig~~~ldeil~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~P~~--v~~am~~~~ 131 (133)
T 4fvg_A 70 TLRNALGTKNLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQ--LQRAMAAEA 131 (133)
T ss_dssp HHHHHHHTSCHHHHHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEECCCC-----------
T ss_pred HHHHHhccccHHHHHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCCCHH--HHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999986 899886443
No 4
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=99.67 E-value=1.3e-16 Score=137.88 Aligned_cols=109 Identities=12% Similarity=0.170 Sum_probs=96.7
Q ss_pred eEEEeeeeeeecccc-eecCCCcEEEEeEEEEEecCCCCHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhhhhcc
Q 037578 37 TVFDITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGPREDDSDSLLRYAKLIAPKDRNSVHVREIVKGIIEGETRVLAASMT 115 (506)
Q Consensus 37 ~~vslr~~~i~~~~~-~~T~D~v~v~V~av~~v~v~~~d~~~i~~aa~~~~~~~~~~~~i~~~v~~~leg~lR~iig~mt 115 (506)
.++|+|.++++++++ ++|+|+++|.|+++++|+|. ||..++ ..+ ..+...+..+++++||+++|+|+
T Consensus 3 ~~vd~r~~~~~~~~~~v~T~D~~~v~v~~~v~~rI~--dp~~~~---~~v-------~~~~~~l~~~~~~~lR~vig~~~ 70 (113)
T 2rpb_A 3 DHVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVI--DPVKAV---YNV-------SDFLMAIVKLAQTNLRAIIGEME 70 (113)
T ss_dssp SCCCCCCEEEECCCEEEECTTSCEEEECEEEEEEES--CTTTCT---TTT-------THHHHHHHHHHHHHHHHHHTSCC
T ss_pred eEEeeeEEEEecCcceeEeCCCCEEEEEEEEEEEEC--CHHHHH---Hhc-------CCHHHHHHHHHHHHHHHHHhcCc
Confidence 368999999999886 99999999999999999994 775332 222 24667788999999999999999
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHhhccceeeeeeecccccCC
Q 037578 116 MEEVFKGTKQFKQEVFGKVQLELNQFGLVIYNANIKQLVDVP 157 (506)
Q Consensus 116 leei~~~R~~f~~~V~~~~~~dl~~~Gl~I~sv~IkdI~d~~ 157 (506)
+++++++|+.|+..+++.+.+.+.+|||+|.+|+|++|++|+
T Consensus 71 l~ei~~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~ 112 (113)
T 2rpb_A 71 LDETLSGRDIINARLREELDKITDRWGVKITRVEIQRIDPPK 112 (113)
T ss_dssp TTHHHHCHHHHHHHHHHHHHHHHGGGTEECCCEEECCCBCCC
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHhcCeEEEEEEEEEecCCC
Confidence 999999999999999999999999999999999999999985
No 5
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=98.93 E-value=2.2e-06 Score=94.52 Aligned_cols=157 Identities=17% Similarity=0.170 Sum_probs=104.9
Q ss_pred EEecCCeEEEEEc--cCCCceeecCcEEEecC-ceeeEEEee-----------eeeeeccc-------ceecCCCcEEEE
Q 037578 4 KVAGASQFLAITG--SGIDDVKLAKKAFIWPF-QQCTVFDIT-----------PVNYDFEV-------QAMSAEKLEFKL 62 (506)
Q Consensus 4 ~~~~p~ealVvtg--~g~~rvv~gG~~fviP~-q~v~~vslr-----------~~~i~~~~-------~~~T~D~v~v~V 62 (506)
+.||.|.+.-|.- .++.||+.|+-.+.++. +.++.++|. ...+.+-| .+-|+|+.++.+
T Consensus 460 ~rvphnaaVqvyDy~~~~~RvvfGP~lv~L~PdE~ftvlsLSgg~PK~~~~i~sl~L~lGPdf~tD~i~vET~DhArL~L 539 (861)
T 2zuo_A 460 YRVPHNAAVQVYDYRAKRARVVFGPELVTLDPEEQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHARLQL 539 (861)
T ss_dssp EECCTTEEEEEECSSSCCEEEECSSCEEECCSSCEECCEEECCSSSCCTTSEEESSEECSSCEEEEEEEEECTTCCEEEE
T ss_pred EEcCCCeEEEEEecCCCceEEEECCcEEEECCCccEEEEEecCCCCCCCCceEEEEeeeCCccceEEEEEEEcCceEEEE
Confidence 4589999998876 45679998887777766 666666654 11122222 268999999999
Q ss_pred eEEEEEecCCCCHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhhhhccHHHHHhcHHHH-HHHHHHHHHH-----
Q 037578 63 PAVFTIGPREDDSDSLLRYAKLIAPKDRNSVHVREIVKGIIEGETRVLAASMTMEEVFKGTKQF-KQEVFGKVQL----- 136 (506)
Q Consensus 63 ~av~~v~v~~~d~~~i~~aa~~~~~~~~~~~~i~~~v~~~leg~lR~iig~mtleei~~~R~~f-~~~V~~~~~~----- 136 (506)
...|.|.....|+..-..+..-|. -++.+...-. .+.+.+|..+++.|+++.+.+-..+ ...|+..-..
T Consensus 540 ~LsYnW~F~~~d~~~~~~~~k~Fs----v~DFvGd~Ck-~iaSriR~aVA~~~Fd~FHknsa~iir~aVFg~~~~~~~~~ 614 (861)
T 2zuo_A 540 QLAYNWHFELKNRNDPAEAAKLFS----VPDFVGDACK-AIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGP 614 (861)
T ss_dssp EEEEEEEECCTTTTCHHHHHGGGS----SSSHHHHHHH-HHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCCC-------
T ss_pred EEEEEEEEeccCCCChhhhhhhcc----CCchHHHHHH-HHHHHHHHHhhcCcHHHHhhhHHHHHHHhhcCCCccccccc
Confidence 999888764324433334445564 3466666554 3568899999999999998864443 3333221111
Q ss_pred ------------HHhhccceeeeeeecccccCCCchHHHHhh
Q 037578 137 ------------ELNQFGLVIYNANIKQLVDVPGHEYFSYLG 166 (506)
Q Consensus 137 ------------dl~~~Gl~I~sv~IkdI~d~~g~~y~~alg 166 (506)
-+...||.|.||-|+.|.+-+. ...++|.
T Consensus 615 ~~~~~~~~~~~~~F~~N~lvitsVDvqsvEpvDq-rtrd~Lq 655 (861)
T 2zuo_A 615 DGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQ-RTRDALQ 655 (861)
T ss_dssp ------CCCSCEECTTTCEEEEEEEEEEEEESSH-HHHHHHH
T ss_pred ccccccCcccceEEccCCeEEEEEeeeeecccCH-HHHHHHH
Confidence 1567899999999999998774 4666664
No 6
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=91.85 E-value=15 Score=41.11 Aligned_cols=39 Identities=26% Similarity=0.097 Sum_probs=17.9
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHcCCC
Q 037578 351 KLAADGDLYAKQKEAEGQEALGKAQGEY--LKSISTALGGD 389 (506)
Q Consensus 351 ~~~Aea~~~~~~aeAeai~~~g~AeAe~--~~~~aeA~~~~ 389 (506)
..++|-...+...+-+.-+++.+|+.|. .+.+.+|++..
T Consensus 765 ~~~~el~~~~~~~ele~~k~~~la~ie~~kf~~~v~aig~~ 805 (861)
T 2zuo_A 765 VREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPG 805 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhChH
Confidence 3334444444444444444444444333 34445666543
No 7
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=86.11 E-value=9.2 Score=31.46 Aligned_cols=6 Identities=33% Similarity=0.224 Sum_probs=2.6
Q ss_pred CHHHHH
Q 037578 389 DNRAVK 394 (506)
Q Consensus 389 ~~~A~~ 394 (506)
...|+.
T Consensus 92 ~~~Av~ 97 (105)
T 3v6i_B 92 LDEAVA 97 (105)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344444
No 8
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=19.62 E-value=23 Score=34.60 Aligned_cols=13 Identities=15% Similarity=-0.005 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcch
Q 037578 445 VREVAGIYRALPP 457 (506)
Q Consensus 445 ~~~v~~~~~~lp~ 457 (506)
++.+.-.+.++|+
T Consensus 201 ~~~~~~~~~~~p~ 213 (279)
T 3p8c_D 201 SGGSKRHPSTLPV 213 (279)
T ss_dssp -------------
T ss_pred CCccccCCCCCCC
Confidence 3434444455554
No 9
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=17.17 E-value=28 Score=35.08 Aligned_cols=21 Identities=38% Similarity=0.705 Sum_probs=0.0
Q ss_pred eCCCCCCCCCCCCCCCCchHH
Q 037578 426 NTTNESGGGAGGGDASSSAVR 446 (506)
Q Consensus 426 ~~g~~~g~~~~~g~g~~~~~~ 446 (506)
++|++||+|+|||+|+|...+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~ 303 (358)
T 2pk2_A 283 GTGGGSGGGSGGGSGGGTSGG 303 (358)
T ss_dssp ---------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCC
No 10
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=21.21 E-value=30 Score=32.17 Aligned_cols=8 Identities=25% Similarity=0.484 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 037578 445 VREVAGIY 452 (506)
Q Consensus 445 ~~~v~~~~ 452 (506)
+..+..++
T Consensus 203 ~~~~~~~~ 210 (215)
T 2l6f_A 203 TRELDELM 210 (215)
Confidence 33333333
Done!