BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>037580
NLEPFNGMWHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLEL
SSIWALLAAFEDLLPLGTKLLSSQSDAPHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKT
GMLEGVEAALGLPKSSLQKPVYT

High Scoring Gene Products

Symbol, full name Information P value
AT3G04650 protein from Arabidopsis thaliana 5.4e-28

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  037580
        (143 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2084903 - symbol:AT3G04650 species:3702 "Arabi...   315  5.4e-28   1


>TAIR|locus:2084903 [details] [associations]
            symbol:AT3G04650 species:3702 "Arabidopsis thaliana"
            [GO:0005739 "mitochondrion" evidence=ISM] [GO:0009507 "chloroplast"
            evidence=IDA] GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR
            EMBL:AC011437 eggNOG:COG3380 EMBL:AY050342 EMBL:BT004515
            IPI:IPI00525811 RefSeq:NP_566235.1 UniGene:At.26589
            ProteinModelPortal:Q9SR09 SMR:Q9SR09 PaxDb:Q9SR09 PRIDE:Q9SR09
            EnsemblPlants:AT3G04650.1 GeneID:819623 KEGG:ath:AT3G04650
            TAIR:At3g04650 HOGENOM:HOG000244162 InParanoid:Q9SR09 OMA:QARIASW
            PhylomeDB:Q9SR09 ProtClustDB:CLSN2688068 Genevestigator:Q9SR09
            Uniprot:Q9SR09
        Length = 486

 Score = 315 (115.9 bits), Expect = 5.4e-28, P = 5.4e-28
 Identities = 73/155 (47%), Positives = 90/155 (58%)

Query:     2 LEPFNGMWHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQL------LGSSGLPQIARQM 55
             LEP NGMWHLS NG PRGQFDV+++AHN    N    A+ L      +    L  I   +
Sbjct:   229 LEPLNGMWHLSENGTPRGQFDVIVIAHNGKCANRLLSASGLPLVAKQMKKLDLSSIWALL 288

Query:    56 KRLE--LSSI---WALLAAFEDLLPLGTKL--LSSQSDAPHCWTSSTLQLYGKRNKIPQE 108
                +  L ++    A +   E L  +G     L +    PHCWT  +   YGK+NK+PQE
Sbjct:   289 AAFDDPLPTVNFEGAFVKGVESLSWMGNNSAKLGNGRTPPHCWTFFSTAAYGKQNKVPQE 348

Query:   109 IIPTATAEKVKTGMLEGVEAALGLPKSSLQKPVYT 143
              IPT TAEKVK GML+GVE ALGLP+ SL KPVYT
Sbjct:   349 NIPTVTAEKVKAGMLQGVEIALGLPEGSLPKPVYT 383


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.132   0.397    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      143       143   0.00091  102 3  11 22  0.48    31
                                                     30  0.48    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  577 (61 KB)
  Total size of DFA:  136 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.79u 0.10s 14.89t   Elapsed:  00:00:04
  Total cpu time:  14.79u 0.10s 14.89t   Elapsed:  00:00:06
  Start:  Thu May  9 13:38:49 2013   End:  Thu May  9 13:38:55 2013

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