BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037580
(143 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JTG|A Chain A, Solution Structure Of The Thap-Zinc Finger Of Thap1
Length = 87
Score = 29.6 bits (65), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 14 NGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQI 51
N KP ++ + H P C R+C N+LL + +P I
Sbjct: 44 NFKP-TKYSSICSEHFTPDCFKRECNNKLLKENAVPTI 80
>pdb|4FAG|A Chain A, Crystal Structure Of The Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans W104y Mutant In
Complex With Gentisate
pdb|4FBF|A Chain A, Crystal Structure Of The Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans W104y Mutant
Length = 367
Score = 29.3 bits (64), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 38/108 (35%), Gaps = 16/108 (14%)
Query: 35 DRKCANQLLGSSGLPQIARQMKRLELSSIWALLAAFEDLLPLGTKLLSSQSDAPHCWTSS 94
D + Q + P++ K E SI L DL+P+ K PH W S
Sbjct: 7 DHESVTQAMQPKDTPELRALYKSFEEESIIPLWTQLGDLMPIHPK----SKAVPHVWKWS 62
Query: 95 TLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGLPKSSLQKPVY 142
TL +++ E++P G ALGL L Y
Sbjct: 63 TLLRLARKSG---ELVPVGRG---------GERRALGLANPGLGGNAY 98
>pdb|3NST|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase G106a
Mutant From Pseudoaminobacter Salicylatoxidans
pdb|3NVC|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase G106a
Mutant From Pseudoaminobacter Salicylatoxidans In
Complex With Salicylate
pdb|3NW4|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase G106a
Mutant From Pseudoaminobacter Salicylatoxidans In
Complex With Gentisate
Length = 368
Score = 29.3 bits (64), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 38/108 (35%), Gaps = 16/108 (14%)
Query: 35 DRKCANQLLGSSGLPQIARQMKRLELSSIWALLAAFEDLLPLGTKLLSSQSDAPHCWTSS 94
D + Q + P++ K E SI L DL+P+ K PH W S
Sbjct: 7 DHESVTQAMQPKDTPELRALYKSFEEESIIPLWTQLGDLMPIHPK----SKAVPHVWKWS 62
Query: 95 TLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGLPKSSLQKPVY 142
TL +++ E++P G ALGL L Y
Sbjct: 63 TLLRLARKSG---ELVPVGRG---------GERRALGLANPGLGGNAY 98
>pdb|2PHD|A Chain A, Crystal Structure Determination Of A Salicylate 1,2-
Dioxygenase From Pseudaminobacter Salicylatoxidans
pdb|2PHD|B Chain B, Crystal Structure Determination Of A Salicylate 1,2-
Dioxygenase From Pseudaminobacter Salicylatoxidans
pdb|2PHD|C Chain C, Crystal Structure Determination Of A Salicylate 1,2-
Dioxygenase From Pseudaminobacter Salicylatoxidans
pdb|2PHD|D Chain D, Crystal Structure Determination Of A Salicylate 1,2-
Dioxygenase From Pseudaminobacter Salicylatoxidans
pdb|3NJZ|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans Adducts With
Salicylate
pdb|3NKT|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans Adducts With
Naphthoate
pdb|3NL1|A Chain A, Crystal Structure Of Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans Adducts With
Gentisate
Length = 368
Score = 29.3 bits (64), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 38/108 (35%), Gaps = 16/108 (14%)
Query: 35 DRKCANQLLGSSGLPQIARQMKRLELSSIWALLAAFEDLLPLGTKLLSSQSDAPHCWTSS 94
D + Q + P++ K E SI L DL+P+ K PH W S
Sbjct: 7 DHESVTQAMQPKDTPELRALYKSFEEESIIPLWTQLGDLMPIHPK----SKAVPHVWKWS 62
Query: 95 TLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGLPKSSLQKPVY 142
TL +++ E++P G ALGL L Y
Sbjct: 63 TLLRLARKSG---ELVPVGRG---------GERRALGLANPGLGGNAY 98
>pdb|4FAH|A Chain A, Crystal Structure Of The Salicylate 1,2-Dioxygenase From
Pseudoaminobacter Salicylatoxidans A85h Mutant
Length = 367
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Query: 35 DRKCANQLLGSSGLPQIARQMKRLELSSIWALLAAFEDLLPLGTKLLSSQSDAPHCWTSS 94
D + Q + P++ K E SI L DL+P+ K PH W S
Sbjct: 7 DHESVTQAMQPKDTPELRALYKSFEEESIIPLWTQLGDLMPIHPK----SKAVPHVWKWS 62
Query: 95 TLQLYGKRNKIPQEIIPTA 113
TL +++ E++P
Sbjct: 63 TLLRLARKSG---ELVPVG 78
>pdb|3NQB|A Chain A, Crystal Structure Of Adenine Deaminase From Agrobacterium
Tumefaciens (Str. C 58)
pdb|3NQB|B Chain B, Crystal Structure Of Adenine Deaminase From Agrobacterium
Tumefaciens (Str. C 58)
pdb|3T81|A Chain A, Crystal Structure Of Diiron Adenine Deaminase
pdb|3T81|B Chain B, Crystal Structure Of Diiron Adenine Deaminase
pdb|3T8L|A Chain A, Crystal Structure Of Adenine Deaminase With MnFE
pdb|3T8L|B Chain B, Crystal Structure Of Adenine Deaminase With MnFE
Length = 608
Score = 27.7 bits (60), Expect = 2.2, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 28 HNVPSCNDRKCANQLLGSSGLPQIARQMKRLELSSIWALLAA 69
V C D + LL GL + R++ R L WAL AA
Sbjct: 285 QTVTLCTDDVFPDDLLQGGGLDDVVRRLVRYGLKPEWALRAA 326
>pdb|1LKC|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From Salmonella Enterica
pdb|1LC5|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From S. Enterica In Its Apo State
pdb|1LC7|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From S. Enterica Complexed With A
Substrate
pdb|1LC8|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From S. Enterica Complexed With Its
Reaction Intermediate
Length = 364
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 48 LPQIARQMKRLELSSIWALLAAFEDLLPLGTKLLSSQSDAPHCWTSSTL 96
L IA + K L ++ I L AF D +P T + + D PH W +L
Sbjct: 168 LQAIADRCKSLNINLI--LDEAFIDFIPHETGFIPALKDNPHIWVLRSL 214
>pdb|4I8D|A Chain A, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
pdb|4I8D|B Chain B, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
Length = 714
Score = 26.2 bits (56), Expect = 5.9, Method: Composition-based stats.
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 27 AHNVPSCNDRKCANQLLG 44
A N PSCND+ C + LG
Sbjct: 363 ARNSPSCNDKGCDDGALG 380
>pdb|3ZYZ|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution.
pdb|3ZZ1|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution
Length = 713
Score = 26.2 bits (56), Expect = 5.9, Method: Composition-based stats.
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 27 AHNVPSCNDRKCANQLLG 44
A N PSCND+ C + LG
Sbjct: 362 ARNSPSCNDKGCDDGALG 379
>pdb|3CX6|B Chain B, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
pdb|3CX7|B Chain B, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|B Chain B, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 203
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 40 NQLLGSSGLPQIARQMKRLELSSIWALLAAFED 72
N LLG G P RQM +L+++ +L+ +E+
Sbjct: 146 NDLLGLDGDPLRERQMAEKQLAALGDILSKYEE 178
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,049,634
Number of Sequences: 62578
Number of extensions: 146202
Number of successful extensions: 304
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 299
Number of HSP's gapped (non-prelim): 11
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)