BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037580
(143 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6JE36|NDRG1_RAT Protein NDRG1 OS=Rattus norvegicus GN=Ndrg1 PE=1 SV=1
Length = 394
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 1 NLEPFNGMWHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQM 55
++E +G H++L G P+G V++ H++ N + C N L S + +I +
Sbjct: 36 DIETLHGSLHVTLCGTPKGNRPVILTYHDI-GMNHKTCYNPLFNSEDMQEITQHF 89
>sp|Q62433|NDRG1_MOUSE Protein NDRG1 OS=Mus musculus GN=Ndrg1 PE=1 SV=1
Length = 394
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 1 NLEPFNGMWHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQM 55
++E +G H++L G P+G V++ H++ N + C N L S + +I +
Sbjct: 36 DIETLHGSLHVTLCGTPKGNRPVILTYHDI-GMNHKTCYNPLFNSEDMQEITQHF 89
>sp|Q3SYX0|NDRG1_BOVIN Protein NDRG1 OS=Bos taurus GN=NDRG1 PE=2 SV=1
Length = 384
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 1 NLEPFNGMWHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQM 55
++E +G H++L G P+G V++ H++ N + C N L S + +I +
Sbjct: 36 DIETLHGSIHVTLCGTPKGNRPVILTYHDI-GMNHKTCYNPLFNSEDMQEITQHF 89
>sp|A7MB28|NDRG3_BOVIN Protein NDRG3 OS=Bos taurus GN=NDRG3 PE=2 SV=1
Length = 375
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 1 NLEPFNGMWHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQM 55
++E +GM H+++ G P+G V++ H++ N + C N + +I +
Sbjct: 34 DIETAHGMVHVTIRGLPKGNRPVILTYHDI-GLNHKSCFNAFFNFEDMQEITQHF 87
>sp|Q5RA95|NDRG3_PONAB Protein NDRG3 OS=Pongo abelii GN=NDRG3 PE=2 SV=1
Length = 375
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 1 NLEPFNGMWHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQM 55
++E +GM H+++ G P+G V++ H++ N + C N + +I +
Sbjct: 34 DIETTHGMVHVTIRGLPKGNRPVILTYHDI-GLNHKSCFNAFFNFEDMQEITQHF 87
>sp|Q92597|NDRG1_HUMAN Protein NDRG1 OS=Homo sapiens GN=NDRG1 PE=1 SV=1
Length = 394
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 1 NLEPFNGMWHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQM 55
++E +G H++L G P+G V++ H++ N + C N L + +I +
Sbjct: 36 DIETLHGSVHVTLCGTPKGNRPVILTYHDI-GMNHKTCYNPLFNYEDMQEITQHF 89
>sp|Q4R4Q3|NDRG1_MACFA Protein NDRG1 OS=Macaca fascicularis GN=Ndrg1 PE=2 SV=1
Length = 394
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 1 NLEPFNGMWHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQM 55
++E +G H++L G P+G V++ H++ N + C N L + +I +
Sbjct: 36 DIETLHGSVHVTLCGTPKGNRPVILTYHDI-GMNHKTCYNPLFNYEDMQEITQHF 89
>sp|Q6AYR2|NDRG3_RAT Protein NDRG3 OS=Rattus norvegicus GN=Ndrg3 PE=2 SV=1
Length = 375
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 1 NLEPFNGMWHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQM 55
++E +GM H+++ G P+G V++ H++ N + C N + +I +
Sbjct: 34 DIETPHGMVHVTIRGLPKGNRPVILTYHDI-GLNHKSCFNTFFNFEDMQEITQHF 87
>sp|Q9QYF9|NDRG3_MOUSE Protein NDRG3 OS=Mus musculus GN=Ndrg3 PE=1 SV=1
Length = 375
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 1 NLEPFNGMWHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQM 55
++E +GM H+++ G P+G V++ H++ N + C N + +I +
Sbjct: 34 DIETPHGMVHVTIRGLPKGNRPVILTYHDI-GLNHKSCFNTFFNFEDMQEITQHF 87
>sp|Q9UGV2|NDRG3_HUMAN Protein NDRG3 OS=Homo sapiens GN=NDRG3 PE=1 SV=2
Length = 375
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/55 (21%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 1 NLEPFNGMWHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQM 55
++E +G+ H+++ G P+G V++ H++ N + C N + +I +
Sbjct: 34 DIETTHGVVHVTIRGLPKGNRPVILTYHDI-GLNHKSCFNAFFNFEDMQEITQHF 87
>sp|Q8W3P8|AOG_PHAAN Abscisate beta-glucosyltransferase OS=Phaseolus angularis GN=AOG
PE=1 SV=1
Length = 478
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 42 LLGSSGLPQIARQMKRLELSSIWALLAAFEDLLPLGTKLLSSQ 84
L SG+P+ R MK+LE S L+ +F DL P L+ S+
Sbjct: 177 LRNPSGIPERWRGMKQLEEKSFGTLINSFYDLEPAYADLIKSK 219
>sp|Q6DFS4|NDRG3_XENTR Protein NDRG3 OS=Xenopus tropicalis GN=ndrg3 PE=2 SV=1
Length = 387
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 1 NLEPFNGMWHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQM 55
N+E G+ H++++G RG V++ H++ N + C N + +I +
Sbjct: 34 NIETAFGVVHVTMSGNARGNRPVLLTFHDI-GLNHKSCFNSFFNFDDMHEITQHF 87
>sp|Q3TL44|NLRX1_MOUSE NLR family member X1 OS=Mus musculus GN=Nlrx1 PE=2 SV=1
Length = 975
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 32 SCNDRKCANQLLGSSGLPQIARQMKRLELSSIWALLAAFEDLLPLGTKLLSSQSDAPHCW 91
SC R L G+ G + + ++++ L + L AFE L+P + LSS P
Sbjct: 154 SCGRRVQTVVLYGTVGTGK-STLVRKMVLDWCYGRLPAFELLIPFSCEDLSSLGSTP--- 209
Query: 92 TSSTLQLYGKRNKIPQEIIPTATA 115
+S QL +R +E++P TA
Sbjct: 210 -ASLCQLVTQRYTPLKEVLPLMTA 232
>sp|Q2K4Q9|ADEC2_RHIEC Adenine deaminase 2 OS=Rhizobium etli (strain CFN 42 / ATCC 51251)
GN=ade2 PE=3 SV=1
Length = 595
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 30 VPSCNDRKCANQLLGSSGLPQIARQMKRLELSSIWALLAA 69
V C D ++L S GL ++AR++ R + WAL AA
Sbjct: 283 VTLCTDDVFPDELYQSGGLDEVARRLVRYGMKPEWALRAA 322
>sp|Q86UT6|NLRX1_HUMAN NLR family member X1 OS=Homo sapiens GN=NLRX1 PE=1 SV=1
Length = 975
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 29 NVPSCNDRKCANQLLGSSGLPQIARQMKRLELSSIWALLAAFEDLLPLGTKLLSSQSDAP 88
N +C R L G+ G + + ++++ L + L AFE L+P + LSS AP
Sbjct: 151 NPDACGRRVQTVVLYGTVGTGK-STLVRKMVLDWCYGRLPAFELLIPFSCEDLSSLGPAP 209
Query: 89 HCWTSSTLQLYGKRNKIPQEIIPTATA 115
+S QL +R +E++P A
Sbjct: 210 ----ASLCQLVAQRYTPLKEVLPLMAA 232
>sp|Q12ZV0|RL4_METBU 50S ribosomal protein L4P OS=Methanococcoides burtonii (strain
DSM 6242) GN=rpl4p PE=3 SV=1
Length = 253
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 44 GSSGLPQIARQMKRLELSSIWALLAAFEDLLPLGTKLLSSQSDAPHCWTS 93
G LP++ ++ R +L L A L P GTKL + + H W S
Sbjct: 15 GEIALPEVFSEIFRPDLIKKAVLSAQANRLQPYGTKLYAGMQTSAHSWGS 64
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,240,612
Number of Sequences: 539616
Number of extensions: 1883603
Number of successful extensions: 4023
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 4019
Number of HSP's gapped (non-prelim): 18
length of query: 143
length of database: 191,569,459
effective HSP length: 106
effective length of query: 37
effective length of database: 134,370,163
effective search space: 4971696031
effective search space used: 4971696031
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)