Query 037580
Match_columns 143
No_of_seqs 104 out of 161
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 13:45:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037580.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037580hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3380 Predicted NAD/FAD-depe 99.9 4E-23 8.7E-28 171.8 10.2 117 2-131 129-265 (331)
2 TIGR00562 proto_IX_ox protopor 98.3 1.9E-06 4.1E-11 73.8 7.9 117 2-133 249-390 (462)
3 TIGR03467 HpnE squalene-associ 98.0 3.4E-05 7.4E-10 64.3 8.2 111 2-133 223-350 (419)
4 PLN02576 protoporphyrinogen ox 97.9 4E-05 8.7E-10 66.5 7.7 118 2-133 263-414 (496)
5 PRK11883 protoporphyrinogen ox 97.8 8.2E-05 1.8E-09 63.1 8.0 116 2-133 245-383 (451)
6 PRK12416 protoporphyrinogen ox 97.7 5.6E-05 1.2E-09 65.2 5.9 119 2-133 250-391 (463)
7 PLN02328 lysine-specific histo 96.2 0.02 4.3E-07 54.3 8.1 115 2-131 458-595 (808)
8 PLN02268 probable polyamine ox 96.1 0.016 3.6E-07 49.5 6.5 117 2-132 222-357 (435)
9 PLN02529 lysine-specific histo 95.7 0.078 1.7E-06 49.8 9.4 116 2-131 378-515 (738)
10 PRK07233 hypothetical protein; 95.6 0.046 1E-06 45.9 7.0 65 2-74 224-289 (434)
11 PF01593 Amino_oxidase: Flavin 94.4 0.12 2.5E-06 41.9 6.0 115 2-132 235-373 (450)
12 PLN02612 phytoene desaturase 89.3 1.4 3.1E-05 39.9 7.1 105 13-132 348-471 (567)
13 COG1232 HemY Protoporphyrinoge 86.3 3.4 7.4E-05 36.9 7.5 61 3-73 239-300 (444)
14 KOG1276 Protoporphyrinogen oxi 82.6 6.1 0.00013 35.7 7.4 119 4-134 278-423 (491)
15 TIGR02732 zeta_caro_desat caro 82.6 0.75 1.6E-05 40.6 1.7 51 20-76 272-323 (474)
16 TIGR02731 phytoene_desat phyto 74.0 2.5 5.3E-05 36.4 2.3 50 20-75 264-314 (453)
17 COG2907 Predicted NAD/FAD-bind 68.1 10 0.00023 33.7 4.8 60 4-71 245-305 (447)
18 PLN03000 amine oxidase 63.3 43 0.00093 32.7 8.3 63 2-73 402-469 (881)
19 PRK07208 hypothetical protein; 58.9 7.9 0.00017 33.5 2.5 49 20-74 268-316 (479)
20 PF07156 Prenylcys_lyase: Pren 56.4 10 0.00022 32.9 2.7 22 9-30 161-185 (368)
21 PLN02568 polyamine oxidase 56.2 9.4 0.0002 34.5 2.6 64 2-73 266-338 (539)
22 PF13738 Pyr_redox_3: Pyridine 49.2 8 0.00017 28.9 0.8 27 2-29 108-135 (203)
23 PLN02487 zeta-carotene desatur 38.7 21 0.00045 32.8 2.0 106 20-132 348-481 (569)
24 TIGR02733 desat_CrtD C-3',4' d 36.4 28 0.0006 30.4 2.3 47 20-72 282-330 (492)
25 PRK02289 4-oxalocrotonate taut 27.8 75 0.0016 19.9 2.7 28 110-137 12-39 (60)
26 PRK02220 4-oxalocrotonate taut 23.9 66 0.0014 19.7 1.9 26 112-137 14-39 (61)
27 TIGR00013 taut 4-oxalocrotonat 23.5 99 0.0021 19.0 2.7 27 111-137 13-39 (63)
28 cd00491 4Oxalocrotonate_Tautom 22.9 89 0.0019 18.8 2.3 26 112-137 13-38 (58)
29 PLN02172 flavin-containing mon 20.7 69 0.0015 28.4 2.0 28 2-29 139-170 (461)
No 1
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.89 E-value=4e-23 Score=171.84 Aligned_cols=117 Identities=18% Similarity=0.290 Sum_probs=100.4
Q ss_pred CcccCCceEEe-cCCCCcCCCcEEEEccCCCCCCChhHHHHhhCc--CCCh-HHHHHHhhcccchhhhhHhhhccCCCcc
Q 037580 2 LEPFNGMWHLS-LNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGS--SGLP-QIARQMKRLELSSIWALLAAFEDLLPLG 77 (143)
Q Consensus 2 l~~~~~~W~L~-~~g~~~g~FD~VVva~P~p~~~~~~qA~~Ll~~--~~~p-~la~~~~~~~~~pCWalMlaf~~pl~~~ 77 (143)
+.+.++.|+|. .+|..+++||.||||+|+| |+..||.+ ...| .|.+.++.+.|.|||++|+.|++|++.|
T Consensus 129 v~~~~~~W~l~~~~g~~~~~~d~vvla~PAP------Q~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~s~~lg~~q~l~~P 202 (331)
T COG3380 129 VARTDNDWTLHTDDGTRHTQFDDVVLAIPAP------QTATLLTTDADDLPAALRAALADVVYAPCWSAVLGYPQPLDRP 202 (331)
T ss_pred heecCCeeEEEecCCCcccccceEEEecCCC------cchhhcCcccccchHHHHHhhccceehhHHHHHhcCCccCCCC
Confidence 45678899998 7899999999999999966 99999954 1245 4888999999999999999999998876
Q ss_pred -------------ccCC-CC-CCC-CCceEEEEeCchHHHhcCCCCCCCCcccHHHHHHHHHHHHHHHhC
Q 037580 78 -------------TKLL-SS-QSD-APHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALG 131 (143)
Q Consensus 78 -------------~~~~-~s-gr~-~~e~WvlhAt~~wS~~hl~pqe~~~e~~~e~V~~~Ll~af~~~~g 131 (143)
..++ ++ ||. ..|.|||||+|+||++|+ +.++|+|+..|..+|+++.|
T Consensus 203 ~~G~~vdg~~laWla~d~sK~g~~p~~~~~vvqasp~wSr~h~-------~~~~e~~i~~l~aA~~~~~~ 265 (331)
T COG3380 203 WPGNFVDGHPLAWLARDASKKGHVPDGEIWVVQASPDWSREHL-------DHPAEQVIVALRAAAQELDG 265 (331)
T ss_pred CCCcccCCCeeeeeeccccCCCCCCcCceEEEEeCchHHHHhh-------cCCHHHHHHHHHHhhhhccC
Confidence 1335 44 776 678999999999999999 89999999999999998766
No 2
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.33 E-value=1.9e-06 Score=73.77 Aligned_cols=117 Identities=14% Similarity=0.118 Sum_probs=84.8
Q ss_pred CcccCCceEEe-cCCCCcCCCcEEEEccCCCCCCChhHHHHhhCcCCChHHHHHHhhcccchhhhhHhhhccC-CCc--c
Q 037580 2 LEPFNGMWHLS-LNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELSSIWALLAAFEDL-LPL--G 77 (143)
Q Consensus 2 l~~~~~~W~L~-~~g~~~g~FD~VVva~P~p~~~~~~qA~~Ll~~~~~p~la~~~~~~~~~pCWalMlaf~~p-l~~--~ 77 (143)
|.+.+++|.+. .+|+ .-.||+||+|+| ..++..|+... .+.+.+.+.++.+.||+.+++.|+++ +.. .
T Consensus 249 I~~~~~~~~v~~~~g~-~~~ad~VI~t~P------~~~~~~ll~~~-~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~ 320 (462)
T TIGR00562 249 LSHRGSNYTLELDNGV-TVETDSVVVTAP------HKAAAGLLSEL-SNSASSHLDKIHSPPVANVNLGFPEGSVDGELE 320 (462)
T ss_pred EEecCCcEEEEECCCc-EEEcCEEEECCC------HHHHHHHhccc-CHHHHHHHhcCCCCceEEEEEEEchHHcCCCCC
Confidence 45667789987 5563 346899999999 55999999753 45677888889999999999999764 221 1
Q ss_pred -------c----cC-----CCC---CCC--CCceEEEEeCchHHHhcCCCCCCCCcccHHHHHHHHHHHHHHHhCCC
Q 037580 78 -------T----KL-----LSS---QSD--APHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGLP 133 (143)
Q Consensus 78 -------~----~~-----~~s---gr~--~~e~WvlhAt~~wS~~hl~pqe~~~e~~~e~V~~~Ll~af~~~~g~~ 133 (143)
. .. +++ ++. +...++++.+..++.++. +.+.+++.+.+++++++.+|++
T Consensus 321 ~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~-------~~~~ee~~~~v~~~L~~~~gi~ 390 (462)
T TIGR00562 321 GFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIV-------DLSENEIINIVLRDLKKVLNIN 390 (462)
T ss_pred ceEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEEeCCCCCcccc-------CCCHHHHHHHHHHHHHHHhCCC
Confidence 0 00 211 232 223566677777777666 7789999999999999988865
No 3
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=97.98 E-value=3.4e-05 Score=64.27 Aligned_cols=111 Identities=14% Similarity=0.093 Sum_probs=75.6
Q ss_pred CcccCCceEEe--cCCCCcCCCcEEEEccCCCCCCChhHHHHhhCcCCChHHHHHHhhcccchhhhhHhhhccCCCc--c
Q 037580 2 LEPFNGMWHLS--LNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELSSIWALLAAFEDLLPL--G 77 (143)
Q Consensus 2 l~~~~~~W~L~--~~g~~~g~FD~VVva~P~p~~~~~~qA~~Ll~~~~~p~la~~~~~~~~~pCWalMlaf~~pl~~--~ 77 (143)
|++++++|.+. .+|+ ...+|.||+|+| ..++..||.. +...+.+.++++.+|+.+++.|++|... +
T Consensus 223 i~~~~~~~~~~~~~~g~-~~~~d~vi~a~p------~~~~~~ll~~---~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~ 292 (419)
T TIGR03467 223 IEANAGGIRALVLSGGE-TLPADAVVLAVP------PRHAASLLPG---EDLGALLTALGYSPITTVHLRLDRAVRLPAP 292 (419)
T ss_pred EEEcCCcceEEEecCCc-cccCCEEEEcCC------HHHHHHhCCC---chHHHHHhhcCCcceEEEEEEeCCCcCCCCC
Confidence 44556665543 3443 456899999999 5599999863 3566677888999999999999998632 2
Q ss_pred ----c--cC-----CCC--CCCCCceEEEEeCchHHHhcCCCCCCCCcccHHHHHHHHHHHHHHHhCCC
Q 037580 78 ----T--KL-----LSS--QSDAPHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGLP 133 (143)
Q Consensus 78 ----~--~~-----~~s--gr~~~e~WvlhAt~~wS~~hl~pqe~~~e~~~e~V~~~Ll~af~~~~g~~ 133 (143)
. .. .+. ++.+..+++++.. +++. +.+.|++.+.+++.+++++|..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-------~~~~e~~~~~~l~~l~~~~~~~ 350 (419)
T TIGR03467 293 MVGLVGGLAQWLFDRGQLAGEPGYLAVVISAA----RDLV-------DLPREELADRIVAELRRAFPRV 350 (419)
T ss_pred eeeecCCceeEEEECCcCCCCCCEEEEEEecc----hhhc-------cCCHHHHHHHHHHHHHHhcCcc
Confidence 0 00 111 2334445666653 3344 5678999999999999988743
No 4
>PLN02576 protoporphyrinogen oxidase
Probab=97.91 E-value=4e-05 Score=66.54 Aligned_cols=118 Identities=13% Similarity=0.085 Sum_probs=79.9
Q ss_pred CcccCCc-eEEe-c--CCCCcCCCcEEEEccCCCCCCChhHHHHhhCcCCChHHHHHHhhcccchhhhhHhhhccCC-Cc
Q 037580 2 LEPFNGM-WHLS-L--NGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELSSIWALLAAFEDLL-PL 76 (143)
Q Consensus 2 l~~~~~~-W~L~-~--~g~~~g~FD~VVva~P~p~~~~~~qA~~Ll~~~~~p~la~~~~~~~~~pCWalMlaf~~pl-~~ 76 (143)
|++.+++ |.+. . +|+....||+||+|+| ..++..|+... .+.+.+.+..+++.||+.+++.|+++. ..
T Consensus 263 I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P------~~~l~~ll~~~-~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~ 335 (496)
T PLN02576 263 LSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAP------LYVVSEMLRPK-SPAAADALPEFYYPPVAAVTTSYPKEAVKR 335 (496)
T ss_pred EEECCCCcEEEEEecCCCceeEEeCEEEECCC------HHHHHHHhccc-CHHHHHHhccCCCCceEEEEEEEchHHccc
Confidence 3455565 9886 2 3433467899999999 66999999864 677888899999999999999998842 21
Q ss_pred ------c-------cc----------C-CCC---CCCCC--ceEEEEeCchHHHhcCCCCCCCCcccHHHHHHHHHHHHH
Q 037580 77 ------G-------TK----------L-LSS---QSDAP--HCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVE 127 (143)
Q Consensus 77 ------~-------~~----------~-~~s---gr~~~--e~WvlhAt~~wS~~hl~pqe~~~e~~~e~V~~~Ll~af~ 127 (143)
+ .. . .+. +|... -.+++....++...+. +.+.|++.+.+++.+.
T Consensus 336 ~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~~~~~~l~~~~~~~~~~~~~-------~~s~ee~~~~~~~~L~ 408 (496)
T PLN02576 336 ERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPEGRVLLLNYIGGSRNTGIA-------SASEEELVEAVDRDLR 408 (496)
T ss_pred ccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCCCCCEEEEEEECCCCCcccc-------cCCHHHHHHHHHHHHH
Confidence 0 00 0 011 22211 1233444444444444 6788999999999999
Q ss_pred HHhCCC
Q 037580 128 AALGLP 133 (143)
Q Consensus 128 ~~~g~~ 133 (143)
+++|..
T Consensus 409 ~~~g~~ 414 (496)
T PLN02576 409 KLLLKP 414 (496)
T ss_pred HHhCCC
Confidence 998854
No 5
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.82 E-value=8.2e-05 Score=63.09 Aligned_cols=116 Identities=18% Similarity=0.195 Sum_probs=82.6
Q ss_pred CcccCCceEEe-cCCCCcCCCcEEEEccCCCCCCChhHHHHhhCcCCChHHHHHHhhcccchhhhhHhhhccCC-Ccc--
Q 037580 2 LEPFNGMWHLS-LNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELSSIWALLAAFEDLL-PLG-- 77 (143)
Q Consensus 2 l~~~~~~W~L~-~~g~~~g~FD~VVva~P~p~~~~~~qA~~Ll~~~~~p~la~~~~~~~~~pCWalMlaf~~pl-~~~-- 77 (143)
|+..+++|.+. .+|+ ...||.||+|+| ..++.+|+. .+.+.+.+.++.+.+|..+++.|+++. ..+
T Consensus 245 i~~~~~~~~v~~~~g~-~~~~d~vI~a~p------~~~~~~l~~---~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~ 314 (451)
T PRK11883 245 IDKSGDGYEIVLSNGG-EIEADAVIVAVP------HPVLPSLFV---APPAFALFKTIPSTSVATVALAFPESATNLPDG 314 (451)
T ss_pred EEEcCCeEEEEECCCC-EEEcCEEEECCC------HHHHHHhcc---ChhHHHHHhCCCCCceEEEEEEeccccCCCCCc
Confidence 34566789886 5664 357899999999 569999976 345667778889999999999999873 211
Q ss_pred -----c--------c--CCCC---CCC-CCceEEEEeCchHHHhcCCCCCCCCcccHHHHHHHHHHHHHHHhCCC
Q 037580 78 -----T--------K--LLSS---QSD-APHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGLP 133 (143)
Q Consensus 78 -----~--------~--~~~s---gr~-~~e~WvlhAt~~wS~~hl~pqe~~~e~~~e~V~~~Ll~af~~~~g~~ 133 (143)
. . .++. .+. .+...+.+....|...... +.+.+++.+.+++.+++.+|+.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~L~~~~g~~ 383 (451)
T PRK11883 315 TGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAVV------DATDEELVAFVLADLSKVMGIT 383 (451)
T ss_pred eEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCchhc------cCCHHHHHHHHHHHHHHHhCCC
Confidence 0 0 0111 111 2345777777777655432 6788999999999999998864
No 6
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.75 E-value=5.6e-05 Score=65.21 Aligned_cols=119 Identities=19% Similarity=0.205 Sum_probs=81.7
Q ss_pred CcccCCceEEe-cCCCCcCCCcEEEEccCCCCCCChhHHHHhhCcCCChHHHHHHhhcccchhhhhHhhhccCC---Ccc
Q 037580 2 LEPFNGMWHLS-LNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELSSIWALLAAFEDLL---PLG 77 (143)
Q Consensus 2 l~~~~~~W~L~-~~g~~~g~FD~VVva~P~p~~~~~~qA~~Ll~~~~~p~la~~~~~~~~~pCWalMlaf~~pl---~~~ 77 (143)
|++++++|.+. .+|+. -.+|.||+|+| ..++..|+. .+.+...+.++.+.+|..+++.|+.+. +..
T Consensus 250 I~~~~~~~~v~~~~g~~-~~ad~VI~a~p------~~~~~~ll~---~~~l~~~~~~~~~~~~~~v~l~~~~~~~~~~~~ 319 (463)
T PRK12416 250 VSKQGDRYEISFANHES-IQADYVVLAAP------HDIAETLLQ---SNELNEQFHTFKNSSLISIYLGFDILDEQLPAD 319 (463)
T ss_pred EEEcCCEEEEEECCCCE-EEeCEEEECCC------HHHHHhhcC---CcchhHHHhcCCCCceEEEEEEechhhcCCCCC
Confidence 45667789887 55543 46899999999 669999986 456777788888999999999999642 211
Q ss_pred -----cc------C-----CCC---CCCCCceEEEEeCchHHHhcCCCCCCCCcccHHHHHHHHHHHHHHHhCCC
Q 037580 78 -----TK------L-----LSS---QSDAPHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGLP 133 (143)
Q Consensus 78 -----~~------~-----~~s---gr~~~e~WvlhAt~~wS~~hl~pqe~~~e~~~e~V~~~Ll~af~~~~g~~ 133 (143)
.. . .++ ++.+...+++...-.|+..+. +.+.+.+.|++.+..++++++++|+.
T Consensus 320 g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~dee~~~~~~~~L~~~lG~~ 391 (463)
T PRK12416 320 GTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVY---ETIKNYSEEELVRVALYDIEKSLGIK 391 (463)
T ss_pred ceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCCc---hhhhcCCHHHHHHHHHHHHHHHhCCC
Confidence 00 0 111 234456788887655432221 01115578999999999999999975
No 7
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=96.23 E-value=0.02 Score=54.33 Aligned_cols=115 Identities=8% Similarity=-0.074 Sum_probs=78.1
Q ss_pred CcccCCceEEecCCCCcCCCcEEEEccCCCCCCChhHHHH----hhCcCCChHHHHHHhhcccchhhhhHhhhccCC-Cc
Q 037580 2 LEPFNGMWHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQ----LLGSSGLPQIARQMKRLELSSIWALLAAFEDLL-PL 76 (143)
Q Consensus 2 l~~~~~~W~L~~~g~~~g~FD~VVva~P~p~~~~~~qA~~----Ll~~~~~p~la~~~~~~~~~pCWalMlaf~~pl-~~ 76 (143)
|.+.+++|.+..+|+. -.||.||+|+|.+ +... +...- .+...+.+.++.+.+|.-+++.|+++. ..
T Consensus 458 I~~~~dgV~V~~~G~~-~~AD~VIvTvPl~------vLk~~~I~F~P~L-P~~K~~AI~~l~yG~~~KV~L~F~~~FW~~ 529 (808)
T PLN02328 458 IRYGVDGVIVYAGGQE-FHGDMVLCTVPLG------VLKKGSIEFYPEL-PQRKKDAIQRLGYGLLNKVALLFPYNFWGG 529 (808)
T ss_pred EEEcCCeEEEEeCCeE-EEcCEEEECCCHH------HHhhcccccCCCC-CHHHHHHHHcCCCcceEEEEEEeCCccccC
Confidence 4556678877655543 4689999999944 5542 22221 225667788899999999999999862 21
Q ss_pred c------ccCCCC--C----------CCCCceEEEEeCchHHHhcCCCCCCCCcccHHHHHHHHHHHHHHHhC
Q 037580 77 G------TKLLSS--Q----------SDAPHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALG 131 (143)
Q Consensus 77 ~------~~~~~s--g----------r~~~e~WvlhAt~~wS~~hl~pqe~~~e~~~e~V~~~Ll~af~~~~g 131 (143)
. ...+++ | ..+...++.+...+++.... +.+.+++.+.+++.+.+++|
T Consensus 530 ~~d~fG~l~~d~s~rG~~~lf~s~s~~~G~~vLvafv~G~~A~~~e-------~lsdeE~v~~vL~~Lr~ifg 595 (808)
T PLN02328 530 EIDTFGHLTEDPSMRGEFFLFYSYSSVSGGPLLIALVAGDAAVKFE-------TLSPVESVKRVLQILRGIFH 595 (808)
T ss_pred CCCceEEEeecCCCCceEEEEecCCCCCCCcEEEEEecChhhHHHh-------cCCHHHHHHHHHHHHHHHhC
Confidence 1 000111 1 23445788899999988875 56778888999999998887
No 8
>PLN02268 probable polyamine oxidase
Probab=96.12 E-value=0.016 Score=49.47 Aligned_cols=117 Identities=9% Similarity=-0.005 Sum_probs=76.7
Q ss_pred CcccCCceEEe-cCCCCcCCCcEEEEccCCCCCCChhHHHHh-hC--cCCChHHHHHHhhcccchhhhhHhhhccCC-Cc
Q 037580 2 LEPFNGMWHLS-LNGKPRGQFDVVIVAHNVPSCNDRKCANQL-LG--SSGLPQIARQMKRLELSSIWALLAAFEDLL-PL 76 (143)
Q Consensus 2 l~~~~~~W~L~-~~g~~~g~FD~VVva~P~p~~~~~~qA~~L-l~--~~~~p~la~~~~~~~~~pCWalMlaf~~pl-~~ 76 (143)
|.+.+++|.+. .+|+. -.+|.||+|+|. .+..++ +. ....+...+.+.++.|.++.-+++.|+++. +-
T Consensus 222 i~~~~~~v~v~~~~g~~-~~ad~VIva~P~------~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~ 294 (435)
T PLN02268 222 IVRRYNGVKVTVEDGTT-FVADAAIIAVPL------GVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWPN 294 (435)
T ss_pred EEEcCCcEEEEECCCcE-EEcCEEEEecCH------HHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCCCCC
Confidence 45567789887 56643 367999999994 466543 21 110123356677888999999999999862 21
Q ss_pred c------cc-----C--CCCCC-CCCceEEEEeCchHHHhcCCCCCCCCcccHHHHHHHHHHHHHHHhCC
Q 037580 77 G------TK-----L--LSSQS-DAPHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGL 132 (143)
Q Consensus 77 ~------~~-----~--~~sgr-~~~e~WvlhAt~~wS~~hl~pqe~~~e~~~e~V~~~Ll~af~~~~g~ 132 (143)
. .. . .+..+ .+....+......++++.. +.+.+++.+.+++.+.++++.
T Consensus 295 ~~~~g~~~~~~~~~~~~~~~~~~~g~~~l~~~~~g~~a~~~~-------~~~~~e~~~~v~~~L~~~~~~ 357 (435)
T PLN02268 295 VEFLGVVAPTSYGCSYFLNLHKATGHPVLVYMPAGRLARDIE-------KLSDEAAANFAMSQLKKMLPD 357 (435)
T ss_pred CceeeccCCCCCCceEEEecccCCCCCEEEEEeccHHHHHHH-------hCCHHHHHHHHHHHHHHHcCC
Confidence 0 00 0 00112 2334677788888877765 678889999999999988763
No 9
>PLN02529 lysine-specific histone demethylase 1
Probab=95.66 E-value=0.078 Score=49.85 Aligned_cols=116 Identities=9% Similarity=-0.002 Sum_probs=76.7
Q ss_pred CcccCCceEEecCCCCcCCCcEEEEccCCCCCCChhHHHHh---hCcCCChHHHHHHhhcccchhhhhHhhhccCC-Cc-
Q 037580 2 LEPFNGMWHLSLNGKPRGQFDVVIVAHNVPSCNDRKCANQL---LGSSGLPQIARQMKRLELSSIWALLAAFEDLL-PL- 76 (143)
Q Consensus 2 l~~~~~~W~L~~~g~~~g~FD~VVva~P~p~~~~~~qA~~L---l~~~~~p~la~~~~~~~~~pCWalMlaf~~pl-~~- 76 (143)
|.+.+++|.+..+++. -.+|+||+|+| ..+.... +.+...+...+.+.++.+.++.-+++.|+++. +.
T Consensus 378 I~~~~dGVtV~t~~~~-~~AD~VIVTVP------lgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~FW~~~ 450 (738)
T PLN02529 378 IKYGNDGVEVIAGSQV-FQADMVLCTVP------LGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVFWGEE 450 (738)
T ss_pred EEEcCCeEEEEECCEE-EEcCEEEECCC------HHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCccccCC
Confidence 4556678888743322 35799999999 4466532 12111124456778889999999999999872 21
Q ss_pred -c----c-----cCC------CCCC-CCCceEEEEeCchHHHhcCCCCCCCCcccHHHHHHHHHHHHHHHhC
Q 037580 77 -G----T-----KLL------SSQS-DAPHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALG 131 (143)
Q Consensus 77 -~----~-----~~~------~sgr-~~~e~WvlhAt~~wS~~hl~pqe~~~e~~~e~V~~~Ll~af~~~~g 131 (143)
. . ... +..+ .+...++.....++++... ..+.+++.+.+++.+.+++|
T Consensus 451 ~~~fG~l~~~~~~~g~~~~~~~~~~~~ggpvLvafv~G~~A~~le-------~lsdeeii~~vl~~L~~ifg 515 (738)
T PLN02529 451 LDTFGCLNESSNKRGEFFLFYGYHTVSGGPALVALVAGEAAQRFE-------NTDPSTLLHRVLSVLRGIYN 515 (738)
T ss_pred CCceEEEeccCCCCceEEEEecCCCCCCCCEEEEEECchhhHHHh-------cCCHHHHHHHHHHHHHHHhC
Confidence 1 0 000 0011 2334788888888887765 56788999999999998887
No 10
>PRK07233 hypothetical protein; Provisional
Probab=95.59 E-value=0.046 Score=45.89 Aligned_cols=65 Identities=14% Similarity=0.223 Sum_probs=46.9
Q ss_pred CcccCCceEEe-cCCCCcCCCcEEEEccCCCCCCChhHHHHhhCcCCChHHHHHHhhcccchhhhhHhhhccCC
Q 037580 2 LEPFNGMWHLS-LNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELSSIWALLAAFEDLL 74 (143)
Q Consensus 2 l~~~~~~W~L~-~~g~~~g~FD~VVva~P~p~~~~~~qA~~Ll~~~~~p~la~~~~~~~~~pCWalMlaf~~pl 74 (143)
|++++++|.+. .+|+ .-.+|.||+|+| ..++..|++.. .+...+.+..+.+.+++.+.+.|++++
T Consensus 224 i~~~~~~~~~~~~~~~-~~~ad~vI~a~p------~~~~~~ll~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~ 289 (434)
T PRK07233 224 VVIDGGGVTGVEVDGE-EEDFDAVISTAP------PPILARLVPDL-PADVLARLRRIDYQGVVCMVLKLRRPL 289 (434)
T ss_pred EEEcCCceEEEEeCCc-eEECCEEEECCC------HHHHHhhcCCC-cHHHHhhhcccCccceEEEEEEecCCC
Confidence 34456677654 4443 345899999999 55889988642 345556677778889999999999875
No 11
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=94.43 E-value=0.12 Score=41.95 Aligned_cols=115 Identities=19% Similarity=0.140 Sum_probs=73.2
Q ss_pred CcccCCceEEe-cCCCCcCCCcEEEEccCCCCCCChhHHHH--hhCcCCChH-HHHHHhhcccchhhhhHhhhccCCCcc
Q 037580 2 LEPFNGMWHLS-LNGKPRGQFDVVIVAHNVPSCNDRKCANQ--LLGSSGLPQ-IARQMKRLELSSIWALLAAFEDLLPLG 77 (143)
Q Consensus 2 l~~~~~~W~L~-~~g~~~g~FD~VVva~P~p~~~~~~qA~~--Ll~~~~~p~-la~~~~~~~~~pCWalMlaf~~pl~~~ 77 (143)
|+++++++.+. .+|+ .-.||.||+|+| ...+.. +++. .+. ..+.+..+.+.+.-.+.+.|+++....
T Consensus 235 I~~~~~~v~v~~~~g~-~~~ad~VI~a~p------~~~l~~i~~~p~--l~~~~~~a~~~~~~~~~~~v~l~~~~~~~~~ 305 (450)
T PF01593_consen 235 IEREDGGVTVTTEDGE-TIEADAVISAVP------PSVLKNILLLPP--LPEDKRRAIENLPYSSVSKVFLGFDRPFWPP 305 (450)
T ss_dssp EEEESSEEEEEETTSS-EEEESEEEE-S-------HHHHHTSEEEST--SHHHHHHHHHTEEEEEEEEEEEEESSGGGGS
T ss_pred ccccccccccccccce-EEecceeeecCc------hhhhhhhhhccc--ccccccccccccccCcceeEEEeeecccccc
Confidence 45667788887 6664 566899999999 667774 4442 444 445667788888889999998863221
Q ss_pred ----------cc--C-----CCC---CCCCCceEEEEeCchHHHhcCCCCCCCCcccHHHHHHHHHHHHHHHhCC
Q 037580 78 ----------TK--L-----LSS---QSDAPHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGL 132 (143)
Q Consensus 78 ----------~~--~-----~~s---gr~~~e~WvlhAt~~wS~~hl~pqe~~~e~~~e~V~~~Ll~af~~~~g~ 132 (143)
.. . .++ ++.+....+.-....+..+.. +.+.|++.+.+++.++++++.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~e~~~~~~~~~L~~~~~~ 373 (450)
T PF01593_consen 306 DIDFFGILYSDGFSPIGYVSDPSKFPGRPGGGVLTSYVGGPDAPEWD-------DLSDEEILERVLDDLRKILPG 373 (450)
T ss_dssp TTTESEEEEESSTSSEEEEEEECCTTSCTTSEEEEEEEEHHHHHHHT-------TSCHHHHHHHHHHHHHHHHTT
T ss_pred cccccceecccCccccccccccccCcccccCCcceeeeeccccchhc-------ccchhhhHHHHHHHhhhcccc
Confidence 01 0 111 222233444444555555554 678899999999999999873
No 12
>PLN02612 phytoene desaturase
Probab=89.34 E-value=1.4 Score=39.85 Aligned_cols=105 Identities=13% Similarity=0.034 Sum_probs=62.0
Q ss_pred cCCCCcCCCcEEEEccCCCCCCChhHHHHhhCcCCC-hHHHHHHhhcccchhhhhHhhhccCCCcc------c--cC---
Q 037580 13 LNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGL-PQIARQMKRLELSSIWALLAAFEDLLPLG------T--KL--- 80 (143)
Q Consensus 13 ~~g~~~g~FD~VVva~P~p~~~~~~qA~~Ll~~~~~-p~la~~~~~~~~~pCWalMlaf~~pl~~~------~--~~--- 80 (143)
.+|+.+ .+|.||+|+| ...+..|+..... ..+.+.+......|+-.+.+.|++|+..+ . ..
T Consensus 348 ~~G~~~-~ad~VI~a~p------~~~l~~Ll~~~~~~~~~~~~l~~l~~~~v~~v~l~~dr~~~~~~~~~~~~~~~~~~~ 420 (567)
T PLN02612 348 TNGSVV-EGDVYVSATP------VDILKLLLPDQWKEIPYFKKLDKLVGVPVINVHIWFDRKLKNTYDHLLFSRSPLLSV 420 (567)
T ss_pred CCCcEE-ECCEEEECCC------HHHHHHhCcchhcCcHHHHHHHhcCCCCeEEEEEEECcccCCCCCceeecCCCCcee
Confidence 455433 4699999999 5588888764211 25556666677888999999999987421 0 00
Q ss_pred --C-CC----CCCCCceEEEEeCchHHHhcCCCCCCCCcccHHHHHHHHHHHHHHHhCC
Q 037580 81 --L-SS----QSDAPHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGL 132 (143)
Q Consensus 81 --~-~s----gr~~~e~WvlhAt~~wS~~hl~pqe~~~e~~~e~V~~~Ll~af~~~~g~ 132 (143)
+ +. .+++.. .++.+.-.=..+.. +.+.|++.+.+++.+++++|.
T Consensus 421 ~~d~S~~~~~~~~~~~-~ll~~~~~~a~~~~-------~~sdeei~e~vl~~L~~lfp~ 471 (567)
T PLN02612 421 YADMSTTCKEYYDPNK-SMLELVFAPAEEWI-------SRSDEDIIDATMKELAKLFPD 471 (567)
T ss_pred ehhhhhcchhhcCCCC-eEEEEEEEcChhhh-------cCCHHHHHHHHHHHHHHHCCc
Confidence 0 00 011112 22222210011112 457789999999999998864
No 13
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=86.33 E-value=3.4 Score=36.86 Aligned_cols=61 Identities=16% Similarity=0.230 Sum_probs=42.6
Q ss_pred cccCCceEEe-cCCCCcCCCcEEEEccCCCCCCChhHHHHhhCcCCChHHHHHHhhcccchhhhhHhhhccC
Q 037580 3 EPFNGMWHLS-LNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELSSIWALLAAFEDL 73 (143)
Q Consensus 3 ~~~~~~W~L~-~~g~~~g~FD~VVva~P~p~~~~~~qA~~Ll~~~~~p~la~~~~~~~~~pCWalMlaf~~p 73 (143)
.+.+.+|.+. .+|.. -.||.||+|.| .+...+||+. ..+.+.+..+..+..=++.++|+.+
T Consensus 239 ~~~~~~~~~~~~~g~~-~~~D~VI~t~p------~~~l~~ll~~---~~~~~~~~~~~~~s~~~vv~~~~~~ 300 (444)
T COG1232 239 DKKGAGKTIVDVGGEK-ITADGVISTAP------LPELARLLGD---EAVSKAAKELQYTSVVTVVVGLDEK 300 (444)
T ss_pred EEcCCccEEEEcCCce-EEcceEEEcCC------HHHHHHHcCC---cchhhhhhhccccceEEEEEEeccc
Confidence 3444555554 44433 66899999999 5599999984 3555666667666777788888875
No 14
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=82.64 E-value=6.1 Score=35.71 Aligned_cols=119 Identities=12% Similarity=0.115 Sum_probs=84.7
Q ss_pred ccCCceEEe---cCCCCcCCCcEEEEccCCCCCCChhHHHHhhCcCCChHHHHHHhhcccchhhhhHhhhccC-CCcc--
Q 037580 4 PFNGMWHLS---LNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELSSIWALLAAFEDL-LPLG-- 77 (143)
Q Consensus 4 ~~~~~W~L~---~~g~~~g~FD~VVva~P~p~~~~~~qA~~Ll~~~~~p~la~~~~~~~~~pCWalMlaf~~p-l~~~-- 77 (143)
...+.|.+. .++..+-.++.++.++| +.-.+.||... .+.++..+..+.+.|..+|-+.|+.+ ...+
T Consensus 278 ~~~~~~~~tl~~~~~~~~~~~~~~~~t~~------~~k~a~ll~~~-~~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~ 350 (491)
T KOG1276|consen 278 SRSGNWSLTLVDHSGTQRVVVSYDAATLP------AVKLAKLLRGL-QNSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQ 350 (491)
T ss_pred cccCCceeEeEcCCCceeeeccccccccc------hHHhhhhcccc-chhhhhhhhcCCCCceEEEEEeccCcccccccc
Confidence 344679986 66777778888889999 55899999874 88999999999999999999999885 2221
Q ss_pred -----cc--C-----------CCC---CCCCCceEEEEeCchHHHhcCCCCCCCCcccHHHHHHHHHHHHHHHhCCCC
Q 037580 78 -----TK--L-----------LSS---QSDAPHCWTSSTLQLYGKRNKIPQEIIPTATAEKVKTGMLEGVEAALGLPK 134 (143)
Q Consensus 78 -----~~--~-----------~~s---gr~~~e~WvlhAt~~wS~~hl~pqe~~~e~~~e~V~~~Ll~af~~~~g~~~ 134 (143)
.+ . ++. .|+++..-++----.|++ |- + +--...|+..+...++++..+|+..
T Consensus 351 GFG~LvPs~~~~~~~~LG~ifdS~~Fp~~~~s~~vtvm~gg~~~~-n~---~-~~~~S~ee~~~~v~~alq~~Lgi~~ 423 (491)
T KOG1276|consen 351 GFGLLVPSEPKNGFKTLGTIFDSMLFPDRSPSPKVTVMMGGGGST-NT---S-LAVPSPEELVNAVTSALQKMLGISN 423 (491)
T ss_pred cceeeccCCCCCCCceeEEEeecccCCCCCCCceEEEEecccccc-cC---c-CCCCCHHHHHHHHHHHHHHHhCCCC
Confidence 11 0 222 344444555555555666 32 1 1145788889999999999999874
No 15
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=82.57 E-value=0.75 Score=40.56 Aligned_cols=51 Identities=10% Similarity=0.091 Sum_probs=38.3
Q ss_pred CCcEEEEccCCCCCCChhHHHHhhCcCC-ChHHHHHHhhcccchhhhhHhhhccCCCc
Q 037580 20 QFDVVIVAHNVPSCNDRKCANQLLGSSG-LPQIARQMKRLELSSIWALLAAFEDLLPL 76 (143)
Q Consensus 20 ~FD~VVva~P~p~~~~~~qA~~Ll~~~~-~p~la~~~~~~~~~pCWalMlaf~~pl~~ 76 (143)
.+|+||+|+| ...+.+||+... .....+.+..+...||=++-+.|+.++..
T Consensus 272 ~aD~VVlA~p------~~~~~~Ll~~~~~~~~~~~~l~~l~~~pi~~v~l~~~~~v~~ 323 (474)
T TIGR02732 272 KADAYVAACD------VPGIKRLLPQEWRQFEEFDNIYKLDAVPVATVQLRYDGWVTE 323 (474)
T ss_pred ECCEEEECCC------hHHHHhhCChhhhcCHHHhhHhcCCCCCeEEEEEEecccccc
Confidence 4799999999 559999997420 12344566777788999999999987654
No 16
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=74.03 E-value=2.5 Score=36.39 Aligned_cols=50 Identities=16% Similarity=0.080 Sum_probs=36.8
Q ss_pred CCcEEEEccCCCCCCChhHHHHhhCcCC-ChHHHHHHhhcccchhhhhHhhhccCCC
Q 037580 20 QFDVVIVAHNVPSCNDRKCANQLLGSSG-LPQIARQMKRLELSSIWALLAAFEDLLP 75 (143)
Q Consensus 20 ~FD~VVva~P~p~~~~~~qA~~Ll~~~~-~p~la~~~~~~~~~pCWalMlaf~~pl~ 75 (143)
..|.||+|+| ...+.+||.... ...+.+.+..+++.|+-.+.+.|++++.
T Consensus 264 ~a~~VI~a~p------~~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~ 314 (453)
T TIGR02731 264 TADAYVSAMP------VDIFKLLLPQPWKQMPFFQKLNGLEGVPVINVHIWFDRKLT 314 (453)
T ss_pred ECCEEEEcCC------HHHHHhhCchhhhcCHHHHHhhcCCCCcEEEEEEEEccccC
Confidence 4599999999 448888886321 1245566666777899999999999865
No 17
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=68.13 E-value=10 Score=33.67 Aligned_cols=60 Identities=23% Similarity=0.225 Sum_probs=40.0
Q ss_pred ccCCceEEe-cCCCCcCCCcEEEEccCCCCCCChhHHHHhhCcCCChHHHHHHhhcccchhhhhHhhhc
Q 037580 4 PFNGMWHLS-LNGKPRGQFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELSSIWALLAAFE 71 (143)
Q Consensus 4 ~~~~~W~L~-~~g~~~g~FD~VVva~P~p~~~~~~qA~~Ll~~~~~p~la~~~~~~~~~pCWalMlaf~ 71 (143)
|-.++=.|. .+| ....||.||+++- +-||..||.. +.|+=-+.+....++-.=++.....
T Consensus 245 rlPdGv~l~~~~G-~s~rFD~vViAth------~dqAl~mL~e-~sp~e~qll~a~~Ys~n~aVlhtd~ 305 (447)
T COG2907 245 RLPDGVVLVNADG-ESRRFDAVVIATH------PDQALALLDE-PSPEERQLLGALRYSANTAVLHTDA 305 (447)
T ss_pred eCCCceEEecCCC-CccccceeeeecC------hHHHHHhcCC-CCHHHHHHHHhhhhhhceeEEeecc
Confidence 334444444 556 5567999999999 5699999976 3665555666666665555555544
No 18
>PLN03000 amine oxidase
Probab=63.28 E-value=43 Score=32.66 Aligned_cols=63 Identities=13% Similarity=0.110 Sum_probs=39.7
Q ss_pred CcccCCceEEecCCCCcCCCcEEEEccCCCCCCChhHHH----HhhCcCCCh-HHHHHHhhcccchhhhhHhhhccC
Q 037580 2 LEPFNGMWHLSLNGKPRGQFDVVIVAHNVPSCNDRKCAN----QLLGSSGLP-QIARQMKRLELSSIWALLAAFEDL 73 (143)
Q Consensus 2 l~~~~~~W~L~~~g~~~g~FD~VVva~P~p~~~~~~qA~----~Ll~~~~~p-~la~~~~~~~~~pCWalMlaf~~p 73 (143)
|.+.++++.+..+++. -.+|.||+|+|.. ... .+.+. .| ...+.+.++.|-..=-+.+.|+++
T Consensus 402 I~~~~dgV~V~~~~~~-~~AD~VIvTVPlg------VLk~~~I~F~Pp--LP~~K~~AI~rL~~G~l~KViL~Fd~~ 469 (881)
T PLN03000 402 IRYGSNGVKVIAGNQV-YEGDMVLCTVPLG------VLKNGSIKFVPE--LPQRKLDCIKRLGFGLLNKVAMLFPYV 469 (881)
T ss_pred EEECCCeEEEEECCcE-EEeceEEEcCCHH------HHhhCceeeCCC--CCHHHHHHHHcCCCcceEEEEEEeCCc
Confidence 4556678888733322 2479999999933 544 33332 33 344566777777776777788775
No 19
>PRK07208 hypothetical protein; Provisional
Probab=58.86 E-value=7.9 Score=33.46 Aligned_cols=49 Identities=14% Similarity=0.093 Sum_probs=36.1
Q ss_pred CCcEEEEccCCCCCCChhHHHHhhCcCCChHHHHHHhhcccchhhhhHhhhccCC
Q 037580 20 QFDVVIVAHNVPSCNDRKCANQLLGSSGLPQIARQMKRLELSSIWALLAAFEDLL 74 (143)
Q Consensus 20 ~FD~VVva~P~p~~~~~~qA~~Ll~~~~~p~la~~~~~~~~~pCWalMlaf~~pl 74 (143)
.+|.||+|+| ...+..+|.....+.+.+.+..+.+.++-.+.+.|+++.
T Consensus 268 ~ad~VI~a~p------~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~ 316 (479)
T PRK07208 268 TADQVISSMP------LRELVAALDPPPPPEVRAAAAGLRYRDFITVGLLVKELN 316 (479)
T ss_pred EcCEEEECCC------HHHHHHhcCCCCCHHHHHHHhCCCcceeEEEEEEecCCC
Confidence 4799999999 558888886321335556667777888777888998864
No 20
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=56.39 E-value=10 Score=32.92 Aligned_cols=22 Identities=18% Similarity=0.605 Sum_probs=16.2
Q ss_pred eEEe---cCCCCcCCCcEEEEccCC
Q 037580 9 WHLS---LNGKPRGQFDVVIVAHNV 30 (143)
Q Consensus 9 W~L~---~~g~~~g~FD~VVva~P~ 30 (143)
|.+. ..+.....||.||||+|-
T Consensus 161 y~v~~~~~~~~~~~~yD~VVIAtPl 185 (368)
T PF07156_consen 161 YEVTYKSSSGTESDEYDIVVIATPL 185 (368)
T ss_pred EEEEEecCCCCccccCCEEEECCCc
Confidence 6664 345456779999999993
No 21
>PLN02568 polyamine oxidase
Probab=56.15 E-value=9.4 Score=34.55 Aligned_cols=64 Identities=20% Similarity=0.253 Sum_probs=37.1
Q ss_pred CcccCCceEEe-cCCCCcCCCcEEEEccCCCCCCChhHHHH-------hhCcCCChH-HHHHHhhcccchhhhhHhhhcc
Q 037580 2 LEPFNGMWHLS-LNGKPRGQFDVVIVAHNVPSCNDRKCANQ-------LLGSSGLPQ-IARQMKRLELSSIWALLAAFED 72 (143)
Q Consensus 2 l~~~~~~W~L~-~~g~~~g~FD~VVva~P~p~~~~~~qA~~-------Ll~~~~~p~-la~~~~~~~~~pCWalMlaf~~ 72 (143)
|.+.+++|.+. .+|+. -.+|.||+|+|.. .... .+... .|. -.+.+..+.|-..==+.+.|++
T Consensus 266 I~~~~~~v~V~~~dG~~-~~aD~VIvTvPl~------vL~~~~~~~~i~F~P~-LP~~k~~Ai~~l~~g~~~Ki~l~f~~ 337 (539)
T PLN02568 266 IEWQDEPVKLHFADGST-MTADHVIVTVSLG------VLKAGIGEDSGLFSPP-LPDFKTDAISRLGFGVVNKLFVELSP 337 (539)
T ss_pred EEEeCCeEEEEEcCCCE-EEcCEEEEcCCHH------HHhhccccccceecCC-CCHHHHHHHHhcCCceeeEEEEEecC
Confidence 45566788887 66643 3579999999933 5543 23221 332 2345556555444445566666
Q ss_pred C
Q 037580 73 L 73 (143)
Q Consensus 73 p 73 (143)
|
T Consensus 338 ~ 338 (539)
T PLN02568 338 R 338 (539)
T ss_pred C
Confidence 5
No 22
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=49.19 E-value=8 Score=28.91 Aligned_cols=27 Identities=19% Similarity=0.349 Sum_probs=17.6
Q ss_pred CcccCCceEEe-cCCCCcCCCcEEEEccC
Q 037580 2 LEPFNGMWHLS-LNGKPRGQFDVVIVAHN 29 (143)
Q Consensus 2 l~~~~~~W~L~-~~g~~~g~FD~VVva~P 29 (143)
+.+++++|.+. .+++.+- +|.||+|+=
T Consensus 108 v~~~~~~w~v~~~~~~~~~-a~~VVlAtG 135 (203)
T PF13738_consen 108 VRRDGDGWTVTTRDGRTIR-ADRVVLATG 135 (203)
T ss_dssp EEEETTTEEEEETTS-EEE-EEEEEE---
T ss_pred EEEeccEEEEEEEecceee-eeeEEEeee
Confidence 56777889998 6663433 899999975
No 23
>PLN02487 zeta-carotene desaturase
Probab=38.70 E-value=21 Score=32.75 Aligned_cols=106 Identities=11% Similarity=0.071 Sum_probs=60.5
Q ss_pred CCcEEEEccCCCCCCChhHHHHhhCcCCChH--HHHHHhhcccchhhhhHhhhccCCCccc------cCCCC-CCC----
Q 037580 20 QFDVVIVAHNVPSCNDRKCANQLLGSSGLPQ--IARQMKRLELSSIWALLAAFEDLLPLGT------KLLSS-QSD---- 86 (143)
Q Consensus 20 ~FD~VVva~P~p~~~~~~qA~~Ll~~~~~p~--la~~~~~~~~~pCWalMlaf~~pl~~~~------~~~~s-gr~---- 86 (143)
.+|+||+|+| ...+.+|+... .+. .-+.+....-.||-++-+.|+.++..+. ++.+- |-+
T Consensus 348 ~aD~VV~A~p------~~~~~~Llp~~-~~~~~~~~~l~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~ 420 (569)
T PLN02487 348 KADAYVAACD------VPGIKRLLPEQ-WREYEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLLY 420 (569)
T ss_pred ECCEEEECCC------HHHHHHhCCch-hhccHHHhHHhcCCCeeEEEEEEEeccccccccccccccccccccccccccc
Confidence 3699999999 45889999753 221 1234455567899999999998866431 11111 111
Q ss_pred -CCceEEEEeC-----ch-H-HH---hcC----CCCCCCCcccHHHHHHHHHHHHHHHhCC
Q 037580 87 -APHCWTSSTL-----QL-Y-GK---RNK----IPQEIIPTATAEKVKTGMLEGVEAALGL 132 (143)
Q Consensus 87 -~~e~WvlhAt-----~~-w-S~---~hl----~pqe~~~e~~~e~V~~~Ll~af~~~~g~ 132 (143)
+...|..-+. ++ | .. .|+ -+-..+-+.+.|++++..++.+.+++..
T Consensus 421 ~~~~~~~f~~di~l~~~~~~~~~~~g~~l~~vis~a~~~~~~~~~ei~~~~~~~L~~~~p~ 481 (569)
T PLN02487 421 SADADFSCFADLALTSPEDYYKEGEGSLIQAVLTPGDPYMPLSNDKIVEKVHKQVLELFPS 481 (569)
T ss_pred ccCCCcceEeeeecCCHHHHcccCCceEEEEEEcCCccccCCCHHHHHHHHHHHHHHhCcc
Confidence 1123544222 32 3 00 000 0001122678899999999999887643
No 24
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=36.36 E-value=28 Score=30.36 Aligned_cols=47 Identities=23% Similarity=0.376 Sum_probs=33.7
Q ss_pred CCcEEEEccCCCCCCChhHHHHhhCcCCC-hHHHHHHhhcccch-hhhhHhhhcc
Q 037580 20 QFDVVIVAHNVPSCNDRKCANQLLGSSGL-PQIARQMKRLELSS-IWALLAAFED 72 (143)
Q Consensus 20 ~FD~VVva~P~p~~~~~~qA~~Ll~~~~~-p~la~~~~~~~~~p-CWalMlaf~~ 72 (143)
.+|.||+++| ......||..... +.+.+.+.+.++.+ ++.+.+++++
T Consensus 282 ~ad~VI~~~~------~~~~~~ll~~~~~~~~~~~~~~~~~~s~~~~~v~l~~~~ 330 (492)
T TIGR02733 282 KADDVVANLP------PQSLLELLGPLGLPPGYRKRLKKLPEPSGAFVFYLGVKR 330 (492)
T ss_pred ECCEEEECCC------HHHHHHhcCcccCCHHHHHHHhcCCCCCceEEEEEeecc
Confidence 4899999999 5588888863112 35666677777665 5678898987
No 25
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=27.80 E-value=75 Score=19.88 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=22.8
Q ss_pred CCcccHHHHHHHHHHHHHHHhCCCCCCC
Q 037580 110 IPTATAEKVKTGMLEGVEAALGLPKSSL 137 (143)
Q Consensus 110 ~~e~~~e~V~~~Ll~af~~~~g~~~~~~ 137 (143)
.+++.+.++++.+.+++.+.+|.+..++
T Consensus 12 rs~EqK~~L~~~it~a~~~~~~~p~~~v 39 (60)
T PRK02289 12 RSQEQKNALAREVTEVVSRIAKAPKEAI 39 (60)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCcceE
Confidence 3466788999999999999999876554
No 26
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=23.87 E-value=66 Score=19.74 Aligned_cols=26 Identities=12% Similarity=0.228 Sum_probs=21.3
Q ss_pred cccHHHHHHHHHHHHHHHhCCCCCCC
Q 037580 112 TATAEKVKTGMLEGVEAALGLPKSSL 137 (143)
Q Consensus 112 e~~~e~V~~~Ll~af~~~~g~~~~~~ 137 (143)
.+.+.++.+.+.+++.+.+|.+..++
T Consensus 14 ~eqk~~l~~~it~~l~~~~~~p~~~v 39 (61)
T PRK02220 14 EEQLKALVKDVTAAVSKNTGAPAEHI 39 (61)
T ss_pred HHHHHHHHHHHHHHHHHHhCcChhhE
Confidence 45678899999999999999876554
No 27
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=23.53 E-value=99 Score=19.01 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=22.4
Q ss_pred CcccHHHHHHHHHHHHHHHhCCCCCCC
Q 037580 111 PTATAEKVKTGMLEGVEAALGLPKSSL 137 (143)
Q Consensus 111 ~e~~~e~V~~~Ll~af~~~~g~~~~~~ 137 (143)
+.+.+.++.+.+.+++.+.+|.+..++
T Consensus 13 t~eqK~~l~~~it~~l~~~lg~~~~~v 39 (63)
T TIGR00013 13 TDEQKRQLIEGVTEAMAETLGANLESI 39 (63)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCcccE
Confidence 356788999999999999999986654
No 28
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=22.94 E-value=89 Score=18.78 Aligned_cols=26 Identities=19% Similarity=0.394 Sum_probs=21.5
Q ss_pred cccHHHHHHHHHHHHHHHhCCCCCCC
Q 037580 112 TATAEKVKTGMLEGVEAALGLPKSSL 137 (143)
Q Consensus 112 e~~~e~V~~~Ll~af~~~~g~~~~~~ 137 (143)
.+.+.++.+.+.+++.+.+|.+..++
T Consensus 13 ~eqk~~l~~~i~~~l~~~~g~~~~~v 38 (58)
T cd00491 13 DEQKRELIERVTEAVSEILGAPEATI 38 (58)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCcccE
Confidence 45688899999999999999886654
No 29
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=20.72 E-value=69 Score=28.36 Aligned_cols=28 Identities=32% Similarity=0.685 Sum_probs=18.4
Q ss_pred CcccCCceEEe-cCCCC---cCCCcEEEEccC
Q 037580 2 LEPFNGMWHLS-LNGKP---RGQFDVVIVAHN 29 (143)
Q Consensus 2 l~~~~~~W~L~-~~g~~---~g~FD~VVva~P 29 (143)
+.+.+++|.+. .++.. .-.||+||||+=
T Consensus 139 V~~~~~~w~V~~~~~~~~~~~~~~d~VIvAtG 170 (461)
T PLN02172 139 VEPVDGKWRVQSKNSGGFSKDEIFDAVVVCNG 170 (461)
T ss_pred EeecCCeEEEEEEcCCCceEEEEcCEEEEecc
Confidence 44566789997 32211 235999999975
Done!