Query 037581
Match_columns 277
No_of_seqs 197 out of 868
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 02:25:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037581.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037581hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3882 Tetraspanin family int 100.0 4.2E-36 9.2E-41 267.8 15.6 222 2-270 6-234 (237)
2 PF00335 Tetraspannin: Tetrasp 99.9 3.9E-25 8.4E-30 190.0 0.1 217 4-264 1-221 (221)
3 cd03154 TM4SF3_like_LEL Tetras 98.8 1.8E-09 3.8E-14 83.5 2.1 97 92-236 1-100 (100)
4 cd03161 TM4SF2_6_like_LEL Tetr 98.8 3.4E-09 7.3E-14 82.2 2.2 73 131-236 29-104 (104)
5 cd03163 TM4SF8_like_LEL Tetras 98.7 5.2E-09 1.1E-13 81.6 2.3 68 131-236 30-104 (105)
6 cd03158 penumbra_like_LEL Tetr 98.7 6.4E-09 1.4E-13 83.1 1.3 39 130-179 28-76 (119)
7 cd03160 CD37_CD82_like_LEL Tet 98.7 9E-09 2E-13 81.8 1.9 77 131-236 33-116 (117)
8 cd03164 CD53_like_LEL Tetraspa 98.6 1.2E-08 2.6E-13 76.8 1.3 58 131-240 29-86 (86)
9 cd03165 NET-5_like_LEL Tetrasp 98.6 1.1E-08 2.4E-13 78.5 0.5 66 131-236 31-98 (98)
10 cd03159 TM4SF9_like_LEL Tetras 98.6 1.9E-08 4.1E-13 80.6 1.4 37 131-178 29-77 (121)
11 cd03166 CD63_LEL Tetraspanin, 98.6 1.7E-08 3.6E-13 77.9 0.9 67 131-236 29-99 (99)
12 cd03155 CD151_like_LEL Tetrasp 98.6 2.4E-08 5.3E-13 78.3 1.7 71 130-236 31-110 (110)
13 cd03162 peripherin_like_LEL Te 98.5 2.3E-08 5E-13 83.0 1.4 78 131-235 34-142 (143)
14 cd03156 uroplakin_I_like_LEL T 98.5 1.2E-08 2.6E-13 80.2 -0.4 40 130-180 31-79 (114)
15 cd03167 oculospanin_like_LEL T 98.5 1.7E-07 3.8E-12 75.2 5.1 38 131-179 29-76 (120)
16 cd03157 TM4SF12_like_LEL Tetra 98.3 5.7E-07 1.2E-11 70.6 4.0 43 131-184 32-76 (103)
17 cd03127 tetraspanin_LEL Tetras 98.0 6.4E-06 1.4E-10 61.4 3.4 37 130-178 28-64 (90)
18 cd03152 CD9_LEL Tetraspanin, e 97.9 1.8E-06 3.8E-11 64.8 -0.2 28 132-176 32-59 (84)
19 cd03151 CD81_like_LEL Tetraspa 95.6 0.0026 5.6E-08 47.7 -0.6 31 131-175 31-61 (84)
20 PF04156 IncA: IncA protein; 84.7 2.5 5.4E-05 36.2 5.9 22 11-32 6-27 (191)
21 PRK12585 putative monovalent c 84.4 14 0.0003 32.2 10.1 54 9-64 5-59 (197)
22 PF05915 DUF872: Eukaryotic pr 83.0 3.1 6.8E-05 33.3 5.3 49 9-60 43-91 (115)
23 PF11297 DUF3098: Protein of u 82.9 2.8 6.1E-05 30.5 4.5 24 12-35 6-29 (69)
24 PF15050 SCIMP: SCIMP protein 78.5 3.8 8.3E-05 33.0 4.3 39 230-269 2-40 (133)
25 KOG4433 Tweety transmembrane/c 76.6 4.8 0.0001 39.7 5.2 43 44-86 208-251 (526)
26 PF03729 DUF308: Short repeat 75.5 21 0.00045 24.7 7.2 48 18-71 1-48 (72)
27 COG4993 Gcd Glucose dehydrogen 74.2 6.2 0.00013 40.3 5.4 63 10-85 4-66 (773)
28 PF10724 DUF2516: Protein of u 71.0 31 0.00067 26.9 7.6 28 7-34 3-30 (100)
29 cd07912 Tweety_N N-terminal do 69.2 9.8 0.00021 37.1 5.5 40 45-84 208-248 (418)
30 PF09323 DUF1980: Domain of un 67.7 19 0.00042 30.7 6.5 40 48-87 35-87 (182)
31 PF07086 DUF1352: Protein of u 65.4 72 0.0016 27.7 9.5 79 9-93 40-119 (186)
32 PF04103 CD20: CD20-like famil 64.3 2.2 4.8E-05 34.5 0.0 67 16-86 6-72 (150)
33 PRK07946 putative monovalent c 64.2 19 0.0004 30.7 5.5 48 12-62 3-50 (163)
34 KOG4054 Uncharacterized conser 62.8 75 0.0016 27.2 8.8 79 9-92 40-118 (183)
35 COG3247 HdeD Uncharacterized c 59.5 32 0.0007 29.8 6.3 51 15-71 21-71 (185)
36 PF06770 Arif-1: Actin-rearran 58.9 43 0.00093 29.3 6.9 54 15-68 4-64 (196)
37 PF05393 Hum_adeno_E3A: Human 55.3 22 0.00048 27.1 4.0 31 242-272 38-68 (94)
38 PF05454 DAG1: Dystroglycan (D 54.3 4.2 9.1E-05 37.7 0.0 36 233-268 142-177 (290)
39 PHA02680 ORF090 IMV phosphoryl 51.7 33 0.00073 26.1 4.4 41 223-263 25-73 (91)
40 PF11384 DUF3188: Protein of u 51.5 35 0.00076 23.1 4.1 21 42-62 22-42 (49)
41 PRK12586 putative monovalent c 51.4 1.4E+02 0.0031 24.8 10.2 32 4-35 3-34 (145)
42 TIGR00941 2a6301s03 Multicompo 50.9 46 0.001 26.1 5.4 47 13-62 2-48 (104)
43 PF05767 Pox_A14: Poxvirus vir 49.8 38 0.00083 25.9 4.5 35 224-258 26-66 (92)
44 PRK12660 putative monovalent c 49.0 1.3E+02 0.0029 23.8 8.7 49 13-65 2-51 (114)
45 PF11694 DUF3290: Protein of u 46.9 42 0.00092 28.0 4.9 44 229-272 5-48 (149)
46 PF06341 DUF1056: Protein of u 46.8 1E+02 0.0022 22.0 6.0 47 4-61 6-52 (63)
47 PF04906 Tweety: Tweety; Inte 44.9 8.4 0.00018 37.4 0.5 33 53-85 194-226 (406)
48 PF02439 Adeno_E3_CR2: Adenovi 43.6 48 0.001 21.2 3.6 24 238-261 8-31 (38)
49 PRK10209 acid-resistance membr 43.2 1.3E+02 0.0029 25.7 7.7 50 15-70 23-72 (190)
50 PRK08600 putative monovalent c 42.9 65 0.0014 25.7 5.2 47 14-63 3-49 (113)
51 KOG4812 Golgi-associated prote 42.0 29 0.00063 31.4 3.3 24 45-68 226-249 (262)
52 PRK12659 putative monovalent c 42.0 71 0.0015 25.5 5.3 47 13-62 2-48 (117)
53 PF09971 DUF2206: Predicted me 41.6 1.1E+02 0.0024 29.4 7.5 27 73-101 217-243 (367)
54 KOG4753 Predicted membrane pro 41.5 16 0.00034 29.4 1.4 14 47-60 86-99 (124)
55 PF11127 DUF2892: Protein of u 39.6 86 0.0019 21.9 5.0 21 47-67 35-55 (66)
56 PRK12658 putative monovalent c 39.5 63 0.0014 26.2 4.7 47 13-62 2-48 (125)
57 PF06772 LtrA: Bacterial low t 39.4 2.2E+02 0.0047 26.7 9.1 55 14-70 256-310 (354)
58 COG2245 Predicted membrane pro 39.4 2.5E+02 0.0054 24.2 9.3 21 14-34 28-48 (182)
59 PF09972 DUF2207: Predicted me 39.4 40 0.00087 32.6 4.3 16 48-63 400-415 (511)
60 PF02932 Neur_chan_memb: Neuro 39.2 1.3E+02 0.0028 24.2 6.9 34 68-101 52-85 (237)
61 PF05374 Mu-conotoxin: Mu-Cono 38.6 14 0.00031 20.6 0.5 11 174-184 2-12 (22)
62 PHA02898 virion envelope prote 38.4 65 0.0014 24.6 4.2 25 234-258 42-66 (92)
63 PF15125 TMEM238: TMEM238 prot 37.9 78 0.0017 22.7 4.3 45 10-64 7-51 (65)
64 PF04156 IncA: IncA protein; 37.6 87 0.0019 26.5 5.6 10 88-97 52-61 (191)
65 PRK09094 putative monovalent c 36.4 96 0.0021 24.8 5.2 46 14-62 3-48 (114)
66 PF09925 DUF2157: Predicted me 36.4 2.3E+02 0.005 22.9 9.5 23 11-33 31-53 (145)
67 PF04854 DUF624: Protein of un 35.1 37 0.0008 24.4 2.5 20 10-29 2-24 (77)
68 PF15048 OSTbeta: Organic solu 34.4 53 0.0011 26.7 3.4 25 6-30 36-60 (125)
69 PF02439 Adeno_E3_CR2: Adenovi 34.2 95 0.002 19.9 3.9 30 238-267 5-34 (38)
70 PF13706 PepSY_TM_3: PepSY-ass 33.9 47 0.001 20.8 2.5 21 49-69 13-33 (37)
71 PHA03048 IMV membrane protein; 32.8 62 0.0014 24.7 3.4 30 234-263 41-72 (93)
72 PF15345 TMEM51: Transmembrane 31.7 54 0.0012 29.4 3.4 16 46-61 62-77 (233)
73 PF06724 DUF1206: Domain of Un 31.4 64 0.0014 23.0 3.2 20 14-33 48-67 (73)
74 COG4298 Uncharacterized protei 30.3 1.2E+02 0.0026 23.1 4.5 22 10-31 17-38 (95)
75 PF06166 DUF979: Protein of un 30.0 1E+02 0.0022 28.8 5.0 57 13-69 2-71 (308)
76 PRK02935 hypothetical protein; 30.0 1.8E+02 0.0039 23.0 5.6 29 46-79 17-45 (110)
77 PF13572 DUF4134: Domain of un 29.7 2.7E+02 0.0058 21.6 6.7 17 49-65 48-64 (98)
78 PF13980 UPF0370: Uncharacteri 28.9 63 0.0014 22.8 2.6 18 230-247 2-19 (63)
79 PF14575 EphA2_TM: Ephrin type 28.8 60 0.0013 23.8 2.7 26 238-263 2-27 (75)
80 PF12877 DUF3827: Domain of un 28.6 32 0.00068 35.4 1.6 31 235-265 268-298 (684)
81 KOG3488 Dolichol phosphate-man 28.6 99 0.0021 22.6 3.7 38 230-267 42-79 (81)
82 PF14979 TMEM52: Transmembrane 28.5 1.2E+02 0.0026 25.4 4.6 32 236-267 19-50 (154)
83 PF11381 DUF3185: Protein of u 28.0 56 0.0012 23.0 2.3 15 48-62 44-58 (59)
84 PF07343 DUF1475: Protein of u 27.2 4.5E+02 0.0097 23.8 8.3 72 7-80 131-204 (254)
85 KOG3950 Gamma/delta sarcoglyca 27.1 66 0.0014 29.2 3.1 29 70-98 33-61 (292)
86 PF13828 DUF4190: Domain of un 27.0 1.1E+02 0.0024 21.5 3.8 30 239-268 8-38 (62)
87 PF11239 DUF3040: Protein of u 26.6 2.4E+02 0.0053 20.6 5.7 15 15-29 47-61 (82)
88 PF01102 Glycophorin_A: Glycop 26.4 1.1E+02 0.0024 24.7 4.0 13 255-267 83-95 (122)
89 PF05478 Prominin: Prominin; 26.1 66 0.0014 34.0 3.5 30 72-101 137-166 (806)
90 KOG3658 Tumor necrosis factor- 26.0 81 0.0018 32.7 3.9 35 227-263 674-708 (764)
91 PRK10263 DNA translocase FtsK; 25.6 6.9E+02 0.015 28.4 11.0 26 5-31 72-97 (1355)
92 PRK15033 tricarballylate utili 25.3 5.2E+02 0.011 25.1 9.0 14 14-27 275-288 (389)
93 PF11023 DUF2614: Protein of u 25.1 2E+02 0.0042 23.0 5.1 30 46-80 16-45 (114)
94 PRK10209 acid-resistance membr 25.0 4E+02 0.0087 22.7 7.7 23 49-71 109-131 (190)
95 PRK12661 putative monovalent c 24.9 1.7E+02 0.0037 24.2 5.0 27 238-265 102-128 (140)
96 COG1030 NfeD Membrane-bound se 24.7 3.3E+02 0.0072 26.8 7.7 15 49-63 261-275 (436)
97 PF15176 LRR19-TM: Leucine-ric 24.4 1.3E+02 0.0027 23.6 3.8 39 234-272 15-54 (102)
98 PF06168 DUF981: Protein of un 24.4 4.8E+02 0.01 22.7 8.2 47 15-61 44-90 (191)
99 PF13630 SdpI: SdpI/YhfL prote 24.0 2.6E+02 0.0056 19.6 5.7 17 45-61 31-47 (76)
100 PF14387 DUF4418: Domain of un 23.0 4E+02 0.0088 21.4 7.5 45 18-64 43-89 (124)
101 PF02656 DUF202: Domain of unk 22.9 2.8E+02 0.006 19.5 6.2 13 19-31 16-28 (73)
102 PF07343 DUF1475: Protein of u 22.8 5.8E+02 0.013 23.1 9.6 77 8-85 6-85 (254)
103 COG1006 MnhC Multisubunit Na+/ 22.8 1.5E+02 0.0033 23.7 4.2 42 16-60 5-46 (115)
104 PF14340 DUF4395: Domain of un 22.6 1.1E+02 0.0024 24.8 3.5 31 236-266 99-130 (131)
105 KOG3653 Transforming growth fa 22.6 1.2E+02 0.0026 30.4 4.2 10 175-184 118-127 (534)
106 PRK05715 NADH:ubiquinone oxido 22.5 3.5E+02 0.0075 20.5 7.5 73 17-97 8-81 (100)
107 PF13829 DUF4191: Domain of un 22.5 2.6E+02 0.0056 25.1 6.0 42 49-94 30-71 (224)
108 PF03142 Chitin_synth_2: Chiti 22.5 7.1E+02 0.015 25.2 9.7 18 12-29 401-418 (527)
109 KOG3088 Secretory carrier memb 22.3 3.7E+02 0.008 25.1 7.0 22 6-27 198-219 (313)
110 PF12666 PrgI: PrgI family pro 21.9 2.1E+02 0.0046 21.2 4.7 12 91-102 59-70 (93)
111 KOG4556 Predicted membrane pro 20.7 3.2E+02 0.007 23.7 5.9 43 46-88 31-73 (205)
112 PRK08388 putative monovalent c 20.7 2.7E+02 0.0059 22.1 5.3 44 15-61 4-48 (119)
113 TIGR01478 STEVOR variant surfa 20.3 1.4E+02 0.003 27.8 3.9 30 241-270 263-292 (295)
No 1
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=100.00 E-value=4.2e-36 Score=267.77 Aligned_cols=222 Identities=15% Similarity=0.270 Sum_probs=168.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhh--hh--chhHHHHHHHHHHHHHHhhhhhhhccchhHHHH
Q 037581 2 ARASNIFVGFLSLCFLVLGIVALSFSLAIHFHGGTATACQK--SL--YTPLLVTAIFLSVLSLLGLIGSCCKNNFLLYLY 77 (277)
Q Consensus 2 ~~~~~~ll~~~N~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~--~~--~~~~I~~G~~i~~is~lGc~Ga~~e~~~lL~~y 77 (277)
.++.||+++++|+++|++|++++++|+|+..++.......+ +. .+.+|++|++++++|++||+||+|||+|+|.+|
T Consensus 6 ~~~~K~~lf~~N~~~~l~G~~ll~~giw~~~~~~~~~~~~~~~~~~~~~ili~~G~v~~~v~flGc~Ga~~es~~lL~~y 85 (237)
T KOG3882|consen 6 SSCLKYLLFLLNLLFWLLGLLLLAVGIWLLADKGFLSSLLESDFLVPAYILIAVGGVVFLVGFLGCCGALRESRCLLLSY 85 (237)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhheeEeccchhhccccchhcchhhhhhhhHHHHHHHHhhhhhhHhhhHHHHHHH
Confidence 36899999999999999999999999999988753111100 12 233699999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhhheeEeecCccccc---ccccchhcccccchHHHhhccCCCcChHHHhhhhhccccccccccCC
Q 037581 78 LIVLFLLILGLCIFAVFVFAVTSNSAGKAV---SRLGFKEYRLGDYKNWLKNHLVNDKNWNEIRSCMIDSQVCKSLERNT 154 (277)
Q Consensus 78 ~~~l~ll~l~el~~~i~~fv~~~~~~~~~~---~~~~~~~y~~~d~~~wlq~~~~~~~~wd~iq~cl~~~~~Ccg~~~~~ 154 (277)
+++|++++++|+++++++|+++++.++... ..+.++.|+.+ .+.++.||.+|+ +++|||.+++
T Consensus 86 ~~~l~l~~i~e~~~~i~~~~~~~~l~~~~~~~~~~~~~~~y~~~---------~~~~~~~d~~Q~----~~~CCG~~~~- 151 (237)
T KOG3882|consen 86 FILLLLLFIAELAAGILAFVFRDSLRDELEEQLLKSIWNNYSSD---------PDLGEAWDKLQR----ELKCCGVNGY- 151 (237)
T ss_pred HHHHHHHHHHHHHHHHHhheeHHHHHHHHHHHHHHHHHHHhCCC---------ccHHHHHHHHHH----hccCCcCCCc-
Confidence 999999999999999999999888765322 11222222211 011257999986 8999999873
Q ss_pred CCCCChhhhhhccCCCCCccccCCCCCCCcccCCCccccCCCCCCCCCCCCCCccccCccccccccCcchHHHHHHHHHH
Q 037581 155 NNNQTAADFFKRNLSPIQSGCCKPPVACGFQYQNATFWISPTSGRPAVNDGDCSAWSNKQDALCFNCNSCKAGVLVNIKK 234 (277)
Q Consensus 155 ~~~~~~~d~~~~~~~~vp~sCCkpp~~Cg~~~~n~t~W~~~~~~~~~~~~~dc~~w~n~~~~~Cy~c~~C~~~i~~~l~~ 234 (277)
+||...+..++|+|||++..... .+. +++...| .+||.+++.+++++
T Consensus 152 ------~~~~~~~~~~vP~SCC~~~~~~~--------------~~~---~~~~~~~----------~~GC~~~~~~~~~~ 198 (237)
T KOG3882|consen 152 ------SDYFNCSSNNVPPSCCKRTRRQK--------------FPQ---DVPDNIY----------TEGCLEKLSSWLES 198 (237)
T ss_pred ------hHHhcCCCCCCCcccCCCccccc--------------ccc---cchhhhh----------ccccHHHHHHHHHH
Confidence 78876543229999998711100 000 0001112 27899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc
Q 037581 235 EWKVLTIINVCVLVFIILIYSCGCYALRNNRSDKRF 270 (277)
Q Consensus 235 ~~~~~~~v~i~v~~i~i~~~~~~ccl~~~~~~~~~~ 270 (277)
+..++++++++++++|++++++|+++.+++++++..
T Consensus 199 ~~~~i~~~~~~i~~~~~~~~~~a~~l~~~i~~~~~~ 234 (237)
T KOG3882|consen 199 NLLIIGGVGLGIAVLELLGMILACCLANAIRNQRDR 234 (237)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999998876643
No 2
>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []. CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.
Probab=99.90 E-value=3.9e-25 Score=190.01 Aligned_cols=217 Identities=19% Similarity=0.354 Sum_probs=38.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccc----hhhhhchhHHHHHHHHHHHHHHhhhhhhhccchhHHHHHH
Q 037581 4 ASNIFVGFLSLCFLVLGIVALSFSLAIHFHGGTATA----CQKSLYTPLLVTAIFLSVLSLLGLIGSCCKNNFLLYLYLI 79 (277)
Q Consensus 4 ~~~~ll~~~N~l~~l~G~~ll~~Gi~~~~~~~~~~~----~~~~~~~~~I~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~ 79 (277)
|.|++++++|++++++|++++++|+|+......... ........++++|+++++++++|++|+.+||++++..|.+
T Consensus 1 c~k~~l~~~n~l~~l~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~~~~~~G~~~~~~~~~~~l~~y~~ 80 (221)
T PF00335_consen 1 CLKYILFFLNVLFLLLGLALIGVGIWLLVNNQYLSEFSSSFISYVIIILIFIGIFILIISFLGCIGACRKNRCLLIIYII 80 (221)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccc
Confidence 679999999999999999999999999422111011 1111223357799999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhheeEeecCcccccccccchhcccccchHHHhhccCCCcChHHHhhhhhccccccccccCCCCCCC
Q 037581 80 VLFLLILGLCIFAVFVFAVTSNSAGKAVSRLGFKEYRLGDYKNWLKNHLVNDKNWNEIRSCMIDSQVCKSLERNTNNNQT 159 (277)
Q Consensus 80 ~l~ll~l~el~~~i~~fv~~~~~~~~~~~~~~~~~y~~~d~~~wlq~~~~~~~~wd~iq~cl~~~~~Ccg~~~~~~~~~~ 159 (277)
++++++++|+++++.++.++++.......+ ..++...++. +.....+.||.+|+ +++|||.++
T Consensus 81 ~~~~~~v~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~iq~----~~~CCG~~~------- 143 (221)
T PF00335_consen 81 LLILLFVLELVVGIVAFSYRDQLNSSLKDG--LSLRCMKSYN----SNESFSEAWDNIQE----KFECCGVNS------- 143 (221)
T ss_dssp -------------------HHHHHHHHHHH--HHHHHHHSST----T-CHHHHHHHHHHH----HHT--SSTT-------
T ss_pred chhhHHHHHHHHHHhhhhcccccccccccc--ccchhhhccc----cccchhhheecccc----cccccCCCC-------
Confidence 999999999999999999876654321110 0000000000 11223566777775 999999886
Q ss_pred hhhhhhccCCCCCccccCCCCCCCcccCCCccccCCCCCCCCCCCCCCccccCccccccccCcchHHHHHHHHHHhhHHH
Q 037581 160 AADFFKRNLSPIQSGCCKPPVACGFQYQNATFWISPTSGRPAVNDGDCSAWSNKQDALCFNCNSCKAGVLVNIKKEWKVL 239 (277)
Q Consensus 160 ~~d~~~~~~~~vp~sCCkpp~~Cg~~~~n~t~W~~~~~~~~~~~~~dc~~w~n~~~~~Cy~c~~C~~~i~~~l~~~~~~~ 239 (277)
+.||......+ +++...++. +. .+ ..+++......+||++++.++++++...+
T Consensus 144 ~~d~~~~~~~~-~~~~~~~~~-~~--------------~~-----------~~~~~~~~~~~~gC~~~l~~~~~~~~~~~ 196 (221)
T PF00335_consen 144 PDDWFTSKWSS-CSSPDSCPD-CQ--------------CP-----------DDCSSENSIYTRGCYDKLREYLRSYLKYI 196 (221)
T ss_dssp CHHHHHHHHHT-----------TC--------------S------------TTCCCCHCCTST-HHHHHHHHHCT-----
T ss_pred Ccccccccccc-ccccccccc-cc--------------cc-----------ccccccccccCCChHHHHHHHHHHHHHHH
Confidence 36775432211 111100000 00 00 00111122344899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhc
Q 037581 240 TIINVCVLVFIILIYSCGCYALRNN 264 (277)
Q Consensus 240 ~~v~i~v~~i~i~~~~~~ccl~~~~ 264 (277)
++++++++++|++++++++++.|++
T Consensus 197 ~~~~~~~~~l~~~~~~~a~~l~~~~ 221 (221)
T PF00335_consen 197 GIVSLAILVLQLIGIILACCLCRHI 221 (221)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999998875
No 3
>cd03154 TM4SF3_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF3_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 3 (TM4SF3) or D6.1a and related proteins. D6.1a associates with alpha6beta4 integrin and supports cell motility, it has been ascribed a role in tumor progression and metastasis.
Probab=98.81 E-value=1.8e-09 Score=83.52 Aligned_cols=97 Identities=11% Similarity=0.118 Sum_probs=58.1
Q ss_pred HhhheeEeecCcccc--cccccchhcccccchHHHhhccCCCcChHHHhhhhhccccccccccCCCCCCChhhhhhccCC
Q 037581 92 AVFVFAVTSNSAGKA--VSRLGFKEYRLGDYKNWLKNHLVNDKNWNEIRSCMIDSQVCKSLERNTNNNQTAADFFKRNLS 169 (277)
Q Consensus 92 ~i~~fv~~~~~~~~~--~~~~~~~~y~~~d~~~wlq~~~~~~~~wd~iq~cl~~~~~Ccg~~~~~~~~~~~~d~~~~~~~ 169 (277)
||++|+++++++... ...+.+++|..+ ..+.++.||.+|+ +++|||.++. .||+. +
T Consensus 1 gi~~~v~r~~i~~~i~~~~~~~i~~y~~~--------~~~~~~~~d~lQ~----~l~CCG~~~~-------~d~~~---~ 58 (100)
T cd03154 1 GIVGAVYKPKIENELKEKNTKLLSLLGQN--------AKSVKKSLEKFQK----ELKCCGLVNG-------ADDWG---N 58 (100)
T ss_pred CEEEEEeHHHHHHHHHHHHHHHHHHcCCC--------hHHHHHHHHHHHH----cCCCCCCCCc-------hhhcc---C
Confidence 578999998876532 123345544211 0112567999987 9999998763 45643 3
Q ss_pred CCCcccc-CCCCCCCcccCCCccccCCCCCCCCCCCCCCccccCccccccccCcchHHHHHHHHHHhh
Q 037581 170 PIQSGCC-KPPVACGFQYQNATFWISPTSGRPAVNDGDCSAWSNKQDALCFNCNSCKAGVLVNIKKEW 236 (277)
Q Consensus 170 ~vp~sCC-kpp~~Cg~~~~n~t~W~~~~~~~~~~~~~dc~~w~n~~~~~Cy~c~~C~~~i~~~l~~~~ 236 (277)
.+|.||| .++..|+.. +. . .+ -..| . +||..++.++++++.
T Consensus 59 ~vP~SCcc~~~~~c~~~--~~------~-~~-------~~~~---------~-~GC~~~i~~~~~~~~ 100 (100)
T cd03154 59 DIPASCNCTTTQSDCVV--AY------Y-GG-------SNVY---------K-EPCISKIKDFLKKNL 100 (100)
T ss_pred CCCCCCcCCCCCCCccc--cc------C-CC-------cCcc---------c-cccHHHHHHHHHhhC
Confidence 6999995 444455421 00 0 00 0112 1 688899999999873
No 4
>cd03161 TM4SF2_6_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF2_6_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 2 (TM4SF2) or Tspan-7, transmembrane 4 superfamily 6 (TM4SF6) or Tspan-6, and related proteins. TM4SF2 has been identified as involved in some forms of X-linked mental retardation.
Probab=98.76 E-value=3.4e-09 Score=82.24 Aligned_cols=73 Identities=15% Similarity=0.295 Sum_probs=47.1
Q ss_pred CcChHHHhhhhhccccccccccCCCCCCChhhhhhcc---CCCCCccccCCCCCCCcccCCCccccCCCCCCCCCCCCCC
Q 037581 131 DKNWNEIRSCMIDSQVCKSLERNTNNNQTAADFFKRN---LSPIQSGCCKPPVACGFQYQNATFWISPTSGRPAVNDGDC 207 (277)
Q Consensus 131 ~~~wd~iq~cl~~~~~Ccg~~~~~~~~~~~~d~~~~~---~~~vp~sCCkpp~~Cg~~~~n~t~W~~~~~~~~~~~~~dc 207 (277)
+..||.+|+ .++|||.++ +.||.... ..+||.|||+....|+....+. +. +..-
T Consensus 29 ~~~~d~iQ~----~l~CCG~~~-------~~Dw~~~~~~~~~~vP~SCC~~~~~C~~~~~~~---------~~---~~~~ 85 (104)
T cd03161 29 SDAVDTVQR----TLHCCGVEN-------YTDWLNSPYFLEKGIPLSCCKNRSDCSPQDLKN---------LT---KAAT 85 (104)
T ss_pred HHHHHHHHh----cCcCcCCCC-------hhhhhccccccCCCcCcccccCCCCCCcccccc---------cc---cccc
Confidence 558999987 999999986 47885421 1369999998666786421100 00 0000
Q ss_pred ccccCccccccccCcchHHHHHHHHHHhh
Q 037581 208 SAWSNKQDALCFNCNSCKAGVLVNIKKEW 236 (277)
Q Consensus 208 ~~w~n~~~~~Cy~c~~C~~~i~~~l~~~~ 236 (277)
.. |. +||..++.++++++.
T Consensus 86 ~i---------~~-~GC~~~~~~~~~~n~ 104 (104)
T cd03161 86 KV---------YQ-QGCFTLVTSFMEANM 104 (104)
T ss_pred cc---------ch-hccHHHHHHHHHHhC
Confidence 11 22 688899999999873
No 5
>cd03163 TM4SF8_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF8_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 8 (TM4SF8) or Tspan-3 and related proteins. Tspan-3 has been reported to form a complex with integrin beta1 and OSP/claudin-11, which may be involved in oligodendrocyte proliferation and migration.
Probab=98.72 E-value=5.2e-09 Score=81.56 Aligned_cols=68 Identities=12% Similarity=0.337 Sum_probs=45.2
Q ss_pred CcChHHHhhhhhccccccccccCCCCCCChhhhhhcc------CCCCCccccCCC-CCCCcccCCCccccCCCCCCCCCC
Q 037581 131 DKNWNEIRSCMIDSQVCKSLERNTNNNQTAADFFKRN------LSPIQSGCCKPP-VACGFQYQNATFWISPTSGRPAVN 203 (277)
Q Consensus 131 ~~~wd~iq~cl~~~~~Ccg~~~~~~~~~~~~d~~~~~------~~~vp~sCCkpp-~~Cg~~~~n~t~W~~~~~~~~~~~ 203 (277)
++.||.+|. .++|||.++ +.||.... ..+||.|||+.+ ..|+.. . +.
T Consensus 30 ~~~~d~iQ~----~l~CCG~~~-------~~Dw~~~~~~~~~~~~~vP~SCC~~~~~~C~~~---~---------~~--- 83 (105)
T cd03163 30 SRAVDYLQR----QLQCCGIHN-------YTDWENTPWFKESKNNSVPLSCCKETFTSCTGS---L---------TQ--- 83 (105)
T ss_pred HHHHHHHHH----hCcccCCCC-------HHHHhhchhhhcCCCCccCcCccCCCCCCcccC---C---------CC---
Confidence 578999987 999999987 47885321 135999999654 347431 0 00
Q ss_pred CCCCccccCccccccccCcchHHHHHHHHHHhh
Q 037581 204 DGDCSAWSNKQDALCFNCNSCKAGVLVNIKKEW 236 (277)
Q Consensus 204 ~~dc~~w~n~~~~~Cy~c~~C~~~i~~~l~~~~ 236 (277)
.... |. +||..++.++++++.
T Consensus 84 --~~~i---------~~-~GC~~~~~~~~~~~~ 104 (105)
T cd03163 84 --PKDL---------YQ-EGCEAKLVKKLQEVM 104 (105)
T ss_pred --CCch---------hh-hccHHHHHHHHHHHh
Confidence 0011 22 688899999999874
No 6
>cd03158 penumbra_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Human Penumbra exhibits growth-suppressive activity in vitro and has been associated with myeloid malignancies.
Probab=98.67 E-value=6.4e-09 Score=83.15 Aligned_cols=39 Identities=13% Similarity=0.206 Sum_probs=28.2
Q ss_pred CCcChHHHhhhhhccccccccccCCCCCCChhhhhhcc----------CCCCCccccCCC
Q 037581 130 NDKNWNEIRSCMIDSQVCKSLERNTNNNQTAADFFKRN----------LSPIQSGCCKPP 179 (277)
Q Consensus 130 ~~~~wd~iq~cl~~~~~Ccg~~~~~~~~~~~~d~~~~~----------~~~vp~sCCkpp 179 (277)
.+..||.+|. +++|||.++. .||.... ..+||.|||+++
T Consensus 28 ~~~~~d~lQ~----~l~CCG~~~~-------~Dw~~~~~~~~~~~~~~~~~vP~SCC~~~ 76 (119)
T cd03158 28 LQNIIDFVQK----EFKCCGGDDY-------RDWSKNMYFNCSSPNPEACGVPYSCCIRA 76 (119)
T ss_pred HHHHHHHHHH----HccCCCCCCh-------hhcccccccccCCCCCcCCCcCcCcccCC
Confidence 3667999987 9999999874 6674211 124999999764
No 7
>cd03160 CD37_CD82_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD37_CD82_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD37 is a leukocyte-specific protein, and its restricted expression pattern suggests a role in the immune system. A regulatory role in T-cell proliferation has been suggested. CD82 is a metastasis suppressor implicated in biological processes ranging from fusion, adhesion, and migration to apoptos
Probab=98.66 E-value=9e-09 Score=81.85 Aligned_cols=77 Identities=13% Similarity=0.329 Sum_probs=45.3
Q ss_pred CcChHHHhhhhhccccccccccCCCCCCChhhhhhccC------CCCCccccCCCCC-CCcccCCCccccCCCCCCCCCC
Q 037581 131 DKNWNEIRSCMIDSQVCKSLERNTNNNQTAADFFKRNL------SPIQSGCCKPPVA-CGFQYQNATFWISPTSGRPAVN 203 (277)
Q Consensus 131 ~~~wd~iq~cl~~~~~Ccg~~~~~~~~~~~~d~~~~~~------~~vp~sCCkpp~~-Cg~~~~n~t~W~~~~~~~~~~~ 203 (277)
++.||.+|. .++|||.++ +.||..... .+||.|||++... ++.. ..
T Consensus 33 ~~~~d~iQ~----~l~CCG~~~-------~~Dw~~~~~~~~~~~~~vP~SCC~~~~~~~~~~----------------~~ 85 (117)
T cd03160 33 EEAWDYVQF----QLQCCGWTG-------PQDWTDNSLIKNSSEPLYPCSCCNSSATADSPR----------------PS 85 (117)
T ss_pred HHHHHHHHh----hCcccCCCC-------chhHHhchhccCCCCCCCCHhhhcCCccccccC----------------CC
Confidence 567999986 999999987 367753211 2699999975421 1111 01
Q ss_pred CCCCccccCccccccccCcchHHHHHHHHHHhh
Q 037581 204 DGDCSAWSNKQDALCFNCNSCKAGVLVNIKKEW 236 (277)
Q Consensus 204 ~~dc~~w~n~~~~~Cy~c~~C~~~i~~~l~~~~ 236 (277)
+.+|..-..+. ..-|. +||..++.+++++|.
T Consensus 86 ~~~C~~~~~~~-~~iy~-~GC~~~l~~~~~~n~ 116 (117)
T cd03160 86 KGFCEAPASLD-WPVYQ-EGCMEKLQSWLNENL 116 (117)
T ss_pred CcccCCCCccc-cchHH-HhhHHHHHHHHHHhc
Confidence 11232110000 01132 689899999999885
No 8
>cd03164 CD53_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD53_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD53 is a tetraspanin of the lymphoid-myeloid lineage and has been implicated in apoptosis protection. It associates with integrin alpha4beta1. Some of the cellular responses modulated by CD53 may be mediated by JNK activation and/or via the AKT pathway.
Probab=98.61 E-value=1.2e-08 Score=76.75 Aligned_cols=58 Identities=17% Similarity=0.360 Sum_probs=44.3
Q ss_pred CcChHHHhhhhhccccccccccCCCCCCChhhhhhccCCCCCccccCCCCCCCcccCCCccccCCCCCCCCCCCCCCccc
Q 037581 131 DKNWNEIRSCMIDSQVCKSLERNTNNNQTAADFFKRNLSPIQSGCCKPPVACGFQYQNATFWISPTSGRPAVNDGDCSAW 210 (277)
Q Consensus 131 ~~~wd~iq~cl~~~~~Ccg~~~~~~~~~~~~d~~~~~~~~vp~sCCkpp~~Cg~~~~n~t~W~~~~~~~~~~~~~dc~~w 210 (277)
+..||.+|+ +++|||.++ +.||. +++|+|||+.+ | ..+
T Consensus 29 ~~~~d~iQ~----~l~CCG~~~-------~~Dw~----~~vP~SCC~~~--~-------------------------~~~ 66 (86)
T cd03164 29 SEAWDMIQS----NLQCCGING-------TTDWG----SGVPSSCCSSD--T-------------------------EYK 66 (86)
T ss_pred HHHHHHHHH----HhcCCCCCC-------hhhhC----CCCChhhcCCC--C-------------------------ccc
Confidence 567999987 999999886 47884 36999999521 1 011
Q ss_pred cCccccccccCcchHHHHHHHHHHhhHHHH
Q 037581 211 SNKQDALCFNCNSCKAGVLVNIKKEWKVLT 240 (277)
Q Consensus 211 ~n~~~~~Cy~c~~C~~~i~~~l~~~~~~~~ 240 (277)
. +||..++.++++++..++|
T Consensus 67 ---------~-~GC~~~~~~~~~~~~~iig 86 (86)
T cd03164 67 ---------V-EGCYKKLKNWFESNFLYTG 86 (86)
T ss_pred ---------c-ccHHHHHHHHHHHHHHHhC
Confidence 1 6888999999999998765
No 9
>cd03165 NET-5_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This sub-family contains proteins similar to human tetraspan NET-5.
Probab=98.59 E-value=1.1e-08 Score=78.51 Aligned_cols=66 Identities=14% Similarity=0.365 Sum_probs=44.8
Q ss_pred CcChHHHhhhhhccccccccccCCCCCCChhhhhhcc-CCCCCccccCCC-CCCCcccCCCccccCCCCCCCCCCCCCCc
Q 037581 131 DKNWNEIRSCMIDSQVCKSLERNTNNNQTAADFFKRN-LSPIQSGCCKPP-VACGFQYQNATFWISPTSGRPAVNDGDCS 208 (277)
Q Consensus 131 ~~~wd~iq~cl~~~~~Ccg~~~~~~~~~~~~d~~~~~-~~~vp~sCCkpp-~~Cg~~~~n~t~W~~~~~~~~~~~~~dc~ 208 (277)
+..||.+|+ .++|||.++ +.||.... ...+|.|||++. ..|+.. +. ..
T Consensus 31 ~~~~d~~Q~----~l~CCG~~~-------~~Dw~~~~~~~~vP~SCC~~~~~~C~~~-------------~~------~~ 80 (98)
T cd03165 31 TNAWDITQT----EFRCCGVTN-------YTDWYEVLGENRVPDSCCQEDSQDCGRN-------------PT------EL 80 (98)
T ss_pred HHHHHHHHH----hCcCcCCCC-------hhHHHHhcCCCCCCHhhcCCCccccccC-------------Cc------cc
Confidence 567999987 999999887 47886421 246999999643 346421 00 00
Q ss_pred cccCccccccccCcchHHHHHHHHHHhh
Q 037581 209 AWSNKQDALCFNCNSCKAGVLVNIKKEW 236 (277)
Q Consensus 209 ~w~n~~~~~Cy~c~~C~~~i~~~l~~~~ 236 (277)
. |. +||..++.++++++.
T Consensus 81 ~---------~~-~GC~~~~~~~~~~~~ 98 (98)
T cd03165 81 W---------WK-TGCYEKVQQWLVDNL 98 (98)
T ss_pred h---------HH-hhhHHHHHHHHHhcC
Confidence 1 22 688899999999873
No 10
>cd03159 TM4SF9_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 9 (TM4SF9) or Tetraspanin-5 and related proteins. TM4SF9 is strongly expressed witin the central nervous system, and expression levels appear to correlate with differentiation status of particular neurons, hinting at a role in neuronal maturation.
Probab=98.57 E-value=1.9e-08 Score=80.64 Aligned_cols=37 Identities=11% Similarity=0.211 Sum_probs=27.4
Q ss_pred CcChHHHhhhhhccccccccccCCCCCCChhhhhhcc-C-----------CCCCccccCC
Q 037581 131 DKNWNEIRSCMIDSQVCKSLERNTNNNQTAADFFKRN-L-----------SPIQSGCCKP 178 (277)
Q Consensus 131 ~~~wd~iq~cl~~~~~Ccg~~~~~~~~~~~~d~~~~~-~-----------~~vp~sCCkp 178 (277)
++.||.+|. .++|||.++ +.||.... + .+||.|||++
T Consensus 29 ~~~~D~iQ~----~l~CCG~~~-------~~DW~~~~~~~~~~~~~~~~~~~vP~SCC~~ 77 (121)
T cd03159 29 QNLIDFLQE----YWQCCGARG-------PDDWNLNIYFNCTDSNPSRERCGVPFSCCVK 77 (121)
T ss_pred HHHHHHHHH----hccCCCCCC-------hHHhcccccccccCCCCCCCCCCCCcccccC
Confidence 578999987 999999987 47775211 0 1499999973
No 11
>cd03166 CD63_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD63 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD63 is present in platelets, neutrophils, and endothelial cells, amongst others. In platelets it associates with the integrin alphaIIBbeta3 and may modulate alphaIIbbeta3-dependent cytoskeletal reorganization.
Probab=98.56 E-value=1.7e-08 Score=77.87 Aligned_cols=67 Identities=15% Similarity=0.315 Sum_probs=44.9
Q ss_pred CcChHHHhhhhhccccccccccCCCCCCChhhhhhcc---CCCCCccccCCC-CCCCcccCCCccccCCCCCCCCCCCCC
Q 037581 131 DKNWNEIRSCMIDSQVCKSLERNTNNNQTAADFFKRN---LSPIQSGCCKPP-VACGFQYQNATFWISPTSGRPAVNDGD 206 (277)
Q Consensus 131 ~~~wd~iq~cl~~~~~Ccg~~~~~~~~~~~~d~~~~~---~~~vp~sCCkpp-~~Cg~~~~n~t~W~~~~~~~~~~~~~d 206 (277)
++.||.+|+ .++|||.++ +.||.... ..++|.|||+.+ ..|+... .+
T Consensus 29 ~~~~d~iQ~----~l~CCG~~~-------~~Dw~~~~~~~~~~vP~SCC~~~~~~C~~~~-----------~~------- 79 (99)
T cd03166 29 RKILDRMQK----DLKCCGANN-------YTDWENIPSLDTDSVPDSCCINVTKGCGINF-----------DE------- 79 (99)
T ss_pred HHHHHHHHH----HhcccCCCC-------hhhhhcccCCCCCCCCcCccCcCCCCcccCC-----------Cc-------
Confidence 567999987 999999987 47885421 136999999643 3465310 00
Q ss_pred CccccCccccccccCcchHHHHHHHHHHhh
Q 037581 207 CSAWSNKQDALCFNCNSCKAGVLVNIKKEW 236 (277)
Q Consensus 207 c~~w~n~~~~~Cy~c~~C~~~i~~~l~~~~ 236 (277)
-.. |. +||..++.++++++.
T Consensus 80 ~~~---------y~-~GC~~~~~~~~~~~~ 99 (99)
T cd03166 80 KVI---------HL-EGCVTKIEGWLKKNI 99 (99)
T ss_pred cch---------HH-hcCHHHHHHHHHHhC
Confidence 001 22 688899999999873
No 12
>cd03155 CD151_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD151_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD151strongly associates with integrins, especially alpha3beta1, alpha6beta1, alpha7beta1, and alpha6beta4; it may play roles in cell-cell adhesion, cell migration, platelet aggregation, and angiogenesis. For example, CD151 is is involved in regulation of migration of neutrophils, endothelial cells, and
Probab=98.56 E-value=2.4e-08 Score=78.34 Aligned_cols=71 Identities=14% Similarity=0.283 Sum_probs=44.9
Q ss_pred CCcChHHHhhhhhccccccccccCCCCCCChhhhhhccC--------CCCCccccCCCC-CCCcccCCCccccCCCCCCC
Q 037581 130 NDKNWNEIRSCMIDSQVCKSLERNTNNNQTAADFFKRNL--------SPIQSGCCKPPV-ACGFQYQNATFWISPTSGRP 200 (277)
Q Consensus 130 ~~~~wd~iq~cl~~~~~Ccg~~~~~~~~~~~~d~~~~~~--------~~vp~sCCkpp~-~Cg~~~~n~t~W~~~~~~~~ 200 (277)
.+..||.+|. .++|||.++ +.||..... ..||.|||+.+. .|+.... .+.
T Consensus 31 ~~~~~d~iQ~----~l~CCG~~~-------~~Dw~~~~~~~~~~~~~~~vP~SCC~~~~~~c~~~~~----------~~~ 89 (110)
T cd03155 31 LTLTVDELQQ----EFKCCGSNN-------YTDWQDSEWINSNEANGRLVPDSCCKTVVDRCGCLRD----------HPS 89 (110)
T ss_pred HHHHHHHHHH----hCcCcCCCC-------hhhhhhccccccCCCCCCCCCccccCCCCCCcccccC----------Chh
Confidence 3567999987 999999987 478854211 259999997543 4642100 111
Q ss_pred CCCCCCCccccCccccccccCcchHHHHHHHHHHhh
Q 037581 201 AVNDGDCSAWSNKQDALCFNCNSCKAGVLVNIKKEW 236 (277)
Q Consensus 201 ~~~~~dc~~w~n~~~~~Cy~c~~C~~~i~~~l~~~~ 236 (277)
..+.++ +||..++.+++++++
T Consensus 90 -------~~~~~~--------~GC~~~~~~~~~~~~ 110 (110)
T cd03155 90 -------NIYKVE--------GGCIPKLEDFLYDHL 110 (110)
T ss_pred -------cccccc--------CChHHHHHHHHHHhC
Confidence 012111 388899999999874
No 13
>cd03162 peripherin_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), peripherin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Peripherin, or RDS (retinal degradation slow) is a glycoprotein expressed in vertebrate photoreceptors, located at the rim of the disc membranes of the photoreceptor outer segments. RDS is thought to play a major role in folding and stacking of the discs. Mutations in RDS have been linked to her
Probab=98.55 E-value=2.3e-08 Score=82.98 Aligned_cols=78 Identities=15% Similarity=0.398 Sum_probs=47.1
Q ss_pred CcChHHHhhhhhccccccccccCCCCCCChhhhhh-----cc----------------------CCCCCccccCC--CCC
Q 037581 131 DKNWNEIRSCMIDSQVCKSLERNTNNNQTAADFFK-----RN----------------------LSPIQSGCCKP--PVA 181 (277)
Q Consensus 131 ~~~wd~iq~cl~~~~~Ccg~~~~~~~~~~~~d~~~-----~~----------------------~~~vp~sCCkp--p~~ 181 (277)
++.||.+|. +++|||.++. .||.. .. ...||.|||+| |..
T Consensus 34 ~~~~D~lQ~----~fkCCG~~~y-------~DW~~~~w~~n~y~~~~~~~~~~~~~~~~~~~~~~~~vP~SCc~~~~~~~ 102 (143)
T cd03162 34 KKTIDMLQI----EFQCCGNNGY-------RDWFEIQWISNRYLDFSSKEVKDRIKSNVDGRYLTDGVPFSCCNPSSPRP 102 (143)
T ss_pred HHHHHHHHH----hccCCCCCCh-------hhhhhhhhhcccccCCCccchhhhhhcccccccccCCcCCcccCCCCCCc
Confidence 567999987 9999998874 55531 11 13689999976 446
Q ss_pred CCcccC-CCccccCCCCCCC-CCCCCCCccccCccccccccCcchHHHHHHHHHHh
Q 037581 182 CGFQYQ-NATFWISPTSGRP-AVNDGDCSAWSNKQDALCFNCNSCKAGVLVNIKKE 235 (277)
Q Consensus 182 Cg~~~~-n~t~W~~~~~~~~-~~~~~dc~~w~n~~~~~Cy~c~~C~~~i~~~l~~~ 235 (277)
|..... |.. .+.. -....+...| + +||++++++|+.+.
T Consensus 103 C~~~~~~~~~------a~~~~~~~~~~~~i~---------~-~GC~~~l~~~~~~~ 142 (143)
T cd03162 103 CIQHQITDNS------AHYNYDYQTEELNLW---------T-RGCREALLEYYTSK 142 (143)
T ss_pred hhhhcccccc------cccccccCcccccch---------H-HHHHHHHHHHHHhc
Confidence 876311 110 0000 0112223334 2 79999999998763
No 14
>cd03156 uroplakin_I_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Uroplakin Ia and Ib are components of the 16nm protein particles, which are packed hexagonally to form 2D crystals of asymmetric unit membranes, and cover the apical surface of mammalian urothelium, contributing to the urinay bladder's permeability barrier function. Uroplakins Ia and Ib are ma
Probab=98.54 E-value=1.2e-08 Score=80.18 Aligned_cols=40 Identities=25% Similarity=0.537 Sum_probs=29.7
Q ss_pred CCcChHHHhhhhhccccccccccCCCCCCChhhhhhc---------cCCCCCccccCCCC
Q 037581 130 NDKNWNEIRSCMIDSQVCKSLERNTNNNQTAADFFKR---------NLSPIQSGCCKPPV 180 (277)
Q Consensus 130 ~~~~wd~iq~cl~~~~~Ccg~~~~~~~~~~~~d~~~~---------~~~~vp~sCCkpp~ 180 (277)
.+..||.||. .++|||.++. .||... ...+||.|||+++.
T Consensus 31 ~~~~~d~iQ~----~l~CCG~~~~-------~Dw~~~~~~~~~~~~~~~~vP~SCC~~~~ 79 (114)
T cd03156 31 ITSTWNRVMI----ELKCCGVNGP-------TDFVDSTSFFRQKNEPNSPYPESCCKRNS 79 (114)
T ss_pred HHHHHHHHHh----cccCcCCCCc-------HHHHhhhHHhccCCCCCCcCCHHHcCccc
Confidence 3667999987 9999999873 677532 12469999997543
No 15
>cd03167 oculospanin_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), oculospanin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contains sequences similar to oculospanin, which is found to be expressed in retinal pigment epithelium, iris, ciliary body, and retinal ganglion cells.
Probab=98.49 E-value=1.7e-07 Score=75.15 Aligned_cols=38 Identities=13% Similarity=0.357 Sum_probs=27.8
Q ss_pred CcChHHHhhhhhccccccccccCCCCCCChhhhhhcc-C---------CCCCccccCCC
Q 037581 131 DKNWNEIRSCMIDSQVCKSLERNTNNNQTAADFFKRN-L---------SPIQSGCCKPP 179 (277)
Q Consensus 131 ~~~wd~iq~cl~~~~~Ccg~~~~~~~~~~~~d~~~~~-~---------~~vp~sCCkpp 179 (277)
+..||.||. .++|||.++. .||.... + .+||.|||+++
T Consensus 29 ~~~~d~iQ~----~l~CCG~~~~-------~Dw~~~~~~~~~~~~~~~~~vP~SCC~~~ 76 (120)
T cd03167 29 RFLIDQVQL----GLQCCGASSY-------QDWQQNLYFNCSSPGVQACSLPASCCIDP 76 (120)
T ss_pred HHHHHHHHH----hccCCCCCCh-------HHhcccccccCCCCCCCCCCCCcCccCCC
Confidence 457999987 9999999873 6775321 1 15999999754
No 16
>cd03157 TM4SF12_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF12_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This sub-family contains proteins similar to human transmembrane 4 superfamily member 12 (TM4SF12).
Probab=98.31 E-value=5.7e-07 Score=70.65 Aligned_cols=43 Identities=16% Similarity=0.464 Sum_probs=31.3
Q ss_pred CcChHHHhhhhhccccccccccCCCCCCChhhhhhcc-CCCCCccccCCCC-CCCc
Q 037581 131 DKNWNEIRSCMIDSQVCKSLERNTNNNQTAADFFKRN-LSPIQSGCCKPPV-ACGF 184 (277)
Q Consensus 131 ~~~wd~iq~cl~~~~~Ccg~~~~~~~~~~~~d~~~~~-~~~vp~sCCkpp~-~Cg~ 184 (277)
++.||.+|+ .++|||.++ +.||.... ...||.|||+++. .|+.
T Consensus 32 ~~~~D~iQ~----~l~CCG~~~-------~~DW~~~~~~~~vP~SCC~~~~~~C~~ 76 (103)
T cd03157 32 THAWNSFQT----EFKCCGVIY-------FTDWLEMTEMEWPPDSCCSNQYPGCAR 76 (103)
T ss_pred HHHHHHHHH----hccCccCCC-------hhHHhccCCCCCCCccccCCCCCCcCc
Confidence 457999987 999999987 47885421 1349999997653 5763
No 17
>cd03127 tetraspanin_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL). Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. The tetraspanin family contains CD9, CD63, CD37, CD53, CD82, CD151, and CD81, amongst others. Tetraspanins are involved in diverse processes such as cell activation and proliferation, adhesion and motility, differentiation, cancer, and others. Their various functions may relate to their ability to act as molecular facilitators, grouping specific cell-surface proteins and affecting formation and stability of signaling complexes. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web", which may also include integr
Probab=97.97 E-value=6.4e-06 Score=61.40 Aligned_cols=37 Identities=19% Similarity=0.440 Sum_probs=28.4
Q ss_pred CCcChHHHhhhhhccccccccccCCCCCCChhhhhhccCCCCCccccCC
Q 037581 130 NDKNWNEIRSCMIDSQVCKSLERNTNNNQTAADFFKRNLSPIQSGCCKP 178 (277)
Q Consensus 130 ~~~~wd~iq~cl~~~~~Ccg~~~~~~~~~~~~d~~~~~~~~vp~sCCkp 178 (277)
.+..||.+|+ +++|||.++ +.||... ...+|+|||++
T Consensus 28 ~~~~~d~iq~----~l~CCG~~~-------~~D~~~~-~~~vP~SCc~~ 64 (90)
T cd03127 28 FQEAMDALQS----TFECCGVNG-------PTDYLDL-RLLVPSSCCKG 64 (90)
T ss_pred HHHHHHHHHH----hCcCcCCCC-------hHHHccC-CCCCCHhhcCC
Confidence 3568999987 999999987 4788542 24699999954
No 18
>cd03152 CD9_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD9 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD9 is found in virtually all tissues and is potentially involved in developmental processes. It associates with the tetraspanins CD81 and CD63, as well as with some integrin, and has been shown to be involved in a variety of activation, adhesion, and cell motility functions, as well as cell-cell interactions - such as
Probab=97.94 E-value=1.8e-06 Score=64.85 Aligned_cols=28 Identities=11% Similarity=0.149 Sum_probs=22.6
Q ss_pred cChHHHhhhhhccccccccccCCCCCCChhhhhhccCCCCCcccc
Q 037581 132 KNWNEIRSCMIDSQVCKSLERNTNNNQTAADFFKRNLSPIQSGCC 176 (277)
Q Consensus 132 ~~wd~iq~cl~~~~~Ccg~~~~~~~~~~~~d~~~~~~~~vp~sCC 176 (277)
..||.+|+ +++|||.+++ .|| .+|.||+
T Consensus 32 ~~~d~iQ~----~l~CCG~~~~-------~D~------~vP~SC~ 59 (84)
T cd03152 32 ETLKAIHF----ALDCCGPTGG-------LEQ------FVTDTCP 59 (84)
T ss_pred HHHHHHHH----HHcCCCCCCC-------ccc------ccCCCCC
Confidence 47999987 9999998863 677 3888873
No 19
>cd03151 CD81_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD81_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD81, also referred to as Target for anti-proliferative antigen-1, TAPA-1, is found in virtually all tissues, may be involved in regulation of cell growth and has been described as a member of the CD19/CD21/Leu-13 signal transduction complex identified on B cells (the B-Cell co-receptor).
Probab=95.58 E-value=0.0026 Score=47.71 Aligned_cols=31 Identities=10% Similarity=0.083 Sum_probs=22.0
Q ss_pred CcChHHHhhhhhccccccccccCCCCCCChhhhhhccCCCCCccc
Q 037581 131 DKNWNEIRSCMIDSQVCKSLERNTNNNQTAADFFKRNLSPIQSGC 175 (277)
Q Consensus 131 ~~~wd~iq~cl~~~~~Ccg~~~~~~~~~~~~d~~~~~~~~vp~sC 175 (277)
...||.+|+ .++|||.++. .|+.. +.+|.+|
T Consensus 31 ~~~~d~iQ~----~l~CCG~~~~-------~d~~~---~~~~~~C 61 (84)
T cd03151 31 TAVLKTFHS----TLDCCGKGNL-------TALLS---LLSTDLC 61 (84)
T ss_pred HHHHHHHHH----hcCCCCCCCC-------cchHH---HHHhCCC
Confidence 346999986 9999999873 34331 3577777
No 20
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=84.75 E-value=2.5 Score=36.16 Aligned_cols=22 Identities=23% Similarity=0.529 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 037581 11 FLSLCFLVLGIVALSFSLAIHF 32 (277)
Q Consensus 11 ~~N~l~~l~G~~ll~~Gi~~~~ 32 (277)
+.+++..++|+++++.||-.++
T Consensus 6 i~~i~~iilgilli~~gI~~Lv 27 (191)
T PF04156_consen 6 IISIILIILGILLIASGIAALV 27 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777765543
No 21
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=84.37 E-value=14 Score=32.21 Aligned_cols=54 Identities=6% Similarity=0.024 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhhhh-chhHHHHHHHHHHHHHHhhh
Q 037581 9 VGFLSLCFLVLGIVALSFSLAIHFHGGTATACQKSL-YTPLLVTAIFLSVLSLLGLI 64 (277)
Q Consensus 9 l~~~N~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~-~~~~I~~G~~i~~is~lGc~ 64 (277)
+-++-.++.++|+.++.+|...+...++ -+.+.= ....-.+|+.++++|.++..
T Consensus 5 ~eiI~~vLLliG~~f~ligaIGLlRfPD--~YtRLHAATKa~TLGv~LILlgv~l~~ 59 (197)
T PRK12585 5 IEIIISIMILIGGLLSILAAIGVIRLPD--VYTRTHAAGISNTFGVSLLLFATVGYF 59 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCc--HHHHhhccccchhhhHHHHHHHHHHHH
Confidence 4455567788898888888888777652 222321 11234556666666655543
No 22
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=82.96 E-value=3.1 Score=33.27 Aligned_cols=49 Identities=18% Similarity=0.225 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhhhhchhHHHHHHHHHHHHH
Q 037581 9 VGFLSLCFLVLGIVALSFSLAIHFHGGTATACQKSLYTPLLVTAIFLSVLSL 60 (277)
Q Consensus 9 l~~~N~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~~~~~I~~G~~i~~is~ 60 (277)
.+.+-++.+++|.+++.+|+.+....- +-...-.++++++|+++|+=|+
T Consensus 43 ~I~la~~Lli~G~~li~~g~l~~~~~i---~~~~~~~~~llilG~L~fIPG~ 91 (115)
T PF05915_consen 43 SIALAVFLLIFGTVLIIIGLLLFFGHI---DGDRDRGWALLILGILCFIPGF 91 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc---CCCCcccchHHHHHHHHHhccH
Confidence 345556778899999999988876541 1112223578889988887665
No 23
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=82.86 E-value=2.8 Score=30.49 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCC
Q 037581 12 LSLCFLVLGIVALSFSLAIHFHGG 35 (277)
Q Consensus 12 ~N~l~~l~G~~ll~~Gi~~~~~~~ 35 (277)
-|.+++++|++++.+|-+++.-.+
T Consensus 6 ~Nyill~iG~~vIilGfilMsg~~ 29 (69)
T PF11297_consen 6 KNYILLAIGIAVIILGFILMSGGG 29 (69)
T ss_pred HHHHHHHHHHHHHHHHHHheeCCC
Confidence 588999999999999988776443
No 24
>PF15050 SCIMP: SCIMP protein
Probab=78.49 E-value=3.8 Score=32.96 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=27.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Q 037581 230 VNIKKEWKVLTIINVCVLVFIILIYSCGCYALRNNRSDKR 269 (277)
Q Consensus 230 ~~l~~~~~~~~~v~i~v~~i~i~~~~~~ccl~~~~~~~~~ 269 (277)
.|.|+|.+++-+|+ +|++-.++|+++-|...+..|+..+
T Consensus 2 ~WWr~nFWiiLAVa-II~vS~~lglIlyCvcR~~lRqGkk 40 (133)
T PF15050_consen 2 SWWRDNFWIILAVA-IILVSVVLGLILYCVCRWQLRQGKK 40 (133)
T ss_pred chHHhchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcccc
Confidence 47888888888888 4556667788877766666555443
No 25
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=76.58 E-value=4.8 Score=39.67 Aligned_cols=43 Identities=16% Similarity=0.266 Sum_probs=33.6
Q ss_pred hchh-HHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHH
Q 037581 44 LYTP-LLVTAIFLSVLSLLGLIGSCCKNNFLLYLYLIVLFLLIL 86 (277)
Q Consensus 44 ~~~~-~I~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~~l~ll~l 86 (277)
..|| .+++=.+.+++.+.+++|-.|+|||+++.|.+.=++.++
T Consensus 208 ~RW~~~v~lL~l~LvvC~v~vlglak~Skc~li~fsv~Gll~lv 251 (526)
T KOG4433|consen 208 YRWLAYVLLLTLLLVVCLVLVLGLAKRSKCLLIVFSVCGLLALV 251 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence 3455 356667788999999999999999999999886555444
No 26
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=75.50 E-value=21 Score=24.74 Aligned_cols=48 Identities=19% Similarity=0.387 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHhhCCCccchhhhhchhHHHHHHHHHHHHHHhhhhhhhccc
Q 037581 18 VLGIVALSFSLAIHFHGGTATACQKSLYTPLLVTAIFLSVLSLLGLIGSCCKNN 71 (277)
Q Consensus 18 l~G~~ll~~Gi~~~~~~~~~~~~~~~~~~~~I~~G~~i~~is~lGc~Ga~~e~~ 71 (277)
+.|+..+..|+++...++ .......+.+|..+++.|..-...+.++++
T Consensus 1 i~Gil~iv~Gi~~l~~p~------~~~~~~~~i~g~~~i~~Gi~~l~~~~~~~~ 48 (72)
T PF03729_consen 1 ISGILFIVLGILLLFNPD------ASLAALAIILGIWLIISGIFQLISAFRRRK 48 (72)
T ss_pred CHHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 358888999999887653 122223478888899999998888888543
No 27
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=74.23 E-value=6.2 Score=40.26 Aligned_cols=63 Identities=21% Similarity=0.275 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCccchhhhhchhHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHH
Q 037581 10 GFLSLCFLVLGIVALSFSLAIHFHGGTATACQKSLYTPLLVTAIFLSVLSLLGLIGSCCKNNFLLYLYLIVLFLLI 85 (277)
Q Consensus 10 ~~~N~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~~~~~I~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~~l~ll~ 85 (277)
-+.-+++.++|+.+++-|+|+..-.++ +-.++.|+.+++.+++= +|+++..|++|..+++.-+
T Consensus 4 ~~~~~~~~~~gl~l~~gg~~l~~lggs---------~yy~iagl~~l~~~~ll----~~~k~aal~lya~~~~~t~ 66 (773)
T COG4993 4 TLTALVIALCGLALLIGGIWLVALGGS---------WYYLIAGLVLLLSAWLL----LRRKRAALWLYALVLLGTL 66 (773)
T ss_pred hHHHHHHHHHHHHHhccceeEEeeCCc---------hHHHHHHHHHHHHHHHH----hccchhHHHHHHHHHHHHh
Confidence 345567888999999988888754431 12467787777777763 5888999999987765433
No 28
>PF10724 DUF2516: Protein of unknown function (DUF2516); InterPro: IPR019662 This entry represents a conserved protein in Actinobacteria. The function is not known.
Probab=70.96 E-value=31 Score=26.91 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 037581 7 IFVGFLSLCFLVLGIVALSFSLAIHFHG 34 (277)
Q Consensus 7 ~ll~~~N~l~~l~G~~ll~~Gi~~~~~~ 34 (277)
.+..+.+.+++++.++++++++|.+++-
T Consensus 3 ~l~~~~~~i~~~l~~~~~~~~v~Alv~a 30 (100)
T PF10724_consen 3 FLFQIQGWILLALSLVALVLAVWALVDA 30 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777889999999999999988763
No 29
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=69.19 E-value=9.8 Score=37.14 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=28.9
Q ss_pred chhH-HHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHH
Q 037581 45 YTPL-LVTAIFLSVLSLLGLIGSCCKNNFLLYLYLIVLFLL 84 (277)
Q Consensus 45 ~~~~-I~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~~l~ll 84 (277)
.+|. +++=++.+++.+++++|..|.|||.+++|.++=++.
T Consensus 208 Rw~~~l~lL~~~lviC~~~l~gl~r~Sr~~li~~s~~g~l~ 248 (418)
T cd07912 208 RWLAYLGLLSLLLVICLVLLVGLARHSRCLLIVFSVCGLFA 248 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 3453 333345678999999999999999999886554333
No 30
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=67.66 E-value=19 Score=30.71 Aligned_cols=40 Identities=28% Similarity=0.455 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccch-------------hHHHHHHHHHHHHHH
Q 037581 48 LLVTAIFLSVLSLLGLIGSCCKNNF-------------LLYLYLIVLFLLILG 87 (277)
Q Consensus 48 ~I~~G~~i~~is~lGc~Ga~~e~~~-------------lL~~y~~~l~ll~l~ 87 (277)
+++.++++++++++-.....+..+. -...|+++++-+++.
T Consensus 35 ~~~a~i~l~ilai~q~~~~~~~~~~~~~~h~h~~~~~~~~~~y~l~~iPll~g 87 (182)
T PF09323_consen 35 LYFAAILLLILAIVQLWRWFRPKRRKEDCHDHGHSKSKKLWSYFLFLIPLLIG 87 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHH
Confidence 3666777778888888888877655 455566665544443
No 31
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=65.35 E-value=72 Score=27.69 Aligned_cols=79 Identities=20% Similarity=0.170 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhhhhchhH-HHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHH
Q 037581 9 VGFLSLCFLVLGIVALSFSLAIHFHGGTATACQKSLYTPL-LVTAIFLSVLSLLGLIGSCCKNNFLLYLYLIVLFLLILG 87 (277)
Q Consensus 9 l~~~N~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~~~~~-I~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~~l~ll~l~ 87 (277)
+++++++++++.++-++.++...++.. +......+-. -.++++ .+++|..|--|.|.-+|..|.+..+++-++
T Consensus 40 l~~~h~ll~l~~~a~v~~~~L~~i~~~---~~p~p~~Wey~~~lS~i---p~~~G~~s~~rN~i~~l~~y~~~~~~~gl~ 113 (186)
T PF07086_consen 40 LILFHALLWLLMAAKVSVDILLEISEL---QIPSPYQWEYIWCLSLI---PSLLGLLSLRRNNISLLRLYMIGSSLFGLL 113 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc---ccCChhHHHHHHHHHHH---HHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 456778888888877777777555443 1111111212 223433 445555555555666777777666655444
Q ss_pred HHHhHh
Q 037581 88 LCIFAV 93 (277)
Q Consensus 88 el~~~i 93 (277)
=+..+.
T Consensus 114 pl~~g~ 119 (186)
T PF07086_consen 114 PLIYGA 119 (186)
T ss_pred HHHHHH
Confidence 444444
No 32
>PF04103 CD20: CD20-like family; InterPro: IPR007237 This family includes the CD20 protein and the beta subunit of the high affinity receptor for IgE Fc. The high affinity receptor for IgE is a tetrameric structure consisting of a single IgE-binding alpha subunit, a single beta subunit, and two disulphide-linked gamma subunits. The alpha subunit of Fc epsilon RI and most Fc receptors are homologous members of the Ig superfamily. By contrast, the beta and gamma subunits from Fc epsilon RI are not homologous to the Ig superfamily. Both molecules have four putative transmembrane segments and a probably topology where both amino- and carboxy termini protrude into the cytoplasm []. This family also includes LR8 like proteins from humans, mice and rats. The function of the human LR8 protein is unknown although it is known to be strongly expressed in the lung fibroblasts []. This family also includes sarcospan is a transmembrane component of dystrophin-associated glycoprotein. Loss of the sarcoglycan complex and sarcospan alone is sufficient to cause muscular dystrophy. The role of the sarcoglycan complex and sarcospan is thought to be to strengthen the dystrophin axis connecting the basement membrane with the cytoskeleton []. ; GO: 0016021 integral to membrane; PDB: 2OSL_Q 3BKY_P 3PP4_P.
Probab=64.30 E-value=2.2 Score=34.46 Aligned_cols=67 Identities=16% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCccchhhhhchhHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHH
Q 037581 16 FLVLGIVALSFSLAIHFHGGTATACQKSLYTPLLVTAIFLSVLSLLGLIGSCCKNNFLLYLYLIVLFLLIL 86 (277)
Q Consensus 16 ~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~~~~~I~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~~l~ll~l 86 (277)
-.++|+..+.+|+.+..... ........| +-.|++.++.|.+|.....|.+++++..++++-++-++
T Consensus 6 qI~lGi~~i~lGi~~~~~~~---~~~~~~~~p-iW~G~~fiisG~l~i~s~k~~~~~lv~~~l~lsi~s~~ 72 (150)
T PF04103_consen 6 QILLGILSIVLGIIALSLSS---SVLVYIGYP-IWGGIFFIISGILGIASEKKPTKCLVIASLVLSIVSAL 72 (150)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHh---HHHHHhccc-HHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHH
Confidence 34678888888887765432 101112223 34488888899999888888888888877766554443
No 33
>PRK07946 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=64.21 E-value=19 Score=30.66 Aligned_cols=48 Identities=21% Similarity=0.093 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCccchhhhhchhHHHHHHHHHHHHHHh
Q 037581 12 LSLCFLVLGIVALSFSLAIHFHGGTATACQKSLYTPLLVTAIFLSVLSLLG 62 (277)
Q Consensus 12 ~N~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~~~~~I~~G~~i~~is~lG 62 (277)
.|++..++..+++++|+|+..+++ -....+...++.-|+.+++++.-+
T Consensus 3 ~~l~~~i~~gvL~~~G~Ylll~rn---Lir~iiGl~il~~~vnLlii~~G~ 50 (163)
T PRK07946 3 ANLGLLVAIGVLTSAGVYLLLERS---LTRMLLGLLLIGNGVNLLILTAGG 50 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466777888889999999987653 111233334577777777766654
No 34
>KOG4054 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.81 E-value=75 Score=27.24 Aligned_cols=79 Identities=18% Similarity=0.177 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhhhhchhHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHH
Q 037581 9 VGFLSLCFLVLGIVALSFSLAIHFHGGTATACQKSLYTPLLVTAIFLSVLSLLGLIGSCCKNNFLLYLYLIVLFLLILGL 88 (277)
Q Consensus 9 l~~~N~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~~~~~I~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~~l~ll~l~e 88 (277)
++++.++.|+++++=+++|---..+.+ +...-+.+...-.+ -++-|++|..+.=|.+...|..|.+.++++.+.-
T Consensus 40 lifvh~lI~v~mlak~~l~hl~~~k~d---~v~~py~wey~~~~--SllpslLgllsf~rnkv~~L~l~m~a~~lf~i~p 114 (183)
T KOG4054|consen 40 LIFVHALIWVLMLAKMSLGHLRLLKHD---QVPMPYQWEYVWAL--SLLPSLLGLLSFRRNKVSYLVLYMIAMGLFMIFP 114 (183)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhcc---cCCCchhHHHHHHH--HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence 345667888888877775532222211 11111222233333 3457778888877778888889988888887665
Q ss_pred HHhH
Q 037581 89 CIFA 92 (277)
Q Consensus 89 l~~~ 92 (277)
+..+
T Consensus 115 ~~~~ 118 (183)
T KOG4054|consen 115 LVYG 118 (183)
T ss_pred HHHh
Confidence 5444
No 35
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=59.50 E-value=32 Score=29.82 Aligned_cols=51 Identities=20% Similarity=0.348 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCccchhhhhchhHHHHHHHHHHHHHHhhhhhhhccc
Q 037581 15 CFLVLGIVALSFSLAIHFHGGTATACQKSLYTPLLVTAIFLSVLSLLGLIGSCCKNN 71 (277)
Q Consensus 15 l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~~~~~I~~G~~i~~is~lGc~Ga~~e~~ 71 (277)
.+.+.|++++..|++....+. -........+|.++++.|.+=..++..+++
T Consensus 21 ~~l~~Gv~lii~Gl~~l~~P~------~s~~~l~~~vG~~lli~Gi~~ii~af~~r~ 71 (185)
T COG3247 21 WVLLLGVLLIILGLLALFNPA------ISTVALVYVVGILLLISGIIEIISAFGNRS 71 (185)
T ss_pred HHHHHHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456789999999999886542 011123467788888888777777776665
No 36
>PF06770 Arif-1: Actin-rearrangement-inducing factor (Arif-1); InterPro: IPR010639 This family consists of several Nucleopolyhedrovirus actin-rearrangement-inducing factor (Arif-1) proteins. In response to Autographa californica nuclear polyhedrosis virus (AcMNPV) infection, a sequential rearrangement of the actin cytoskeleton occurs this is induced by Arif-1 []. Arif-1 is tyrosine phosphorylated and is located at the plasma membrane as a component of the actin rearrangement-inducing complex [].
Probab=58.87 E-value=43 Score=29.32 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCCC--ccchhh---h--hchhHHHHHHHHHHHHHHhhhhhhh
Q 037581 15 CFLVLGIVALSFSLAIHFHGGT--ATACQK---S--LYTPLLVTAIFLSVLSLLGLIGSCC 68 (277)
Q Consensus 15 l~~l~G~~ll~~Gi~~~~~~~~--~~~~~~---~--~~~~~I~~G~~i~~is~lGc~Ga~~ 68 (277)
++.++|++..++|+-..++..- ..|.++ . .+.++.+-|..+++.++.|......
T Consensus 4 ~~~v~g~~~~~~gl~G~~~~~yAllldye~g~~v~N~S~l~~vyG~~l~~~~~~~~~~~~~ 64 (196)
T PF06770_consen 4 ILFVVGSAAFVFGLMGIVDERYALLLDYENGSSVFNCSGLVFVYGPLLLLVTTWGVYKITS 64 (196)
T ss_pred hhHHHHHHHHHHHhhheecCceeeEEEecCCCccEeehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445888888888876665431 122221 1 1234688999999888888866664
No 37
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=55.25 E-value=22 Score=27.09 Aligned_cols=31 Identities=13% Similarity=0.371 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccccccccc
Q 037581 242 INVCVLVFIILIYSCGCYALRNNRSDKRFSR 272 (277)
Q Consensus 242 v~i~v~~i~i~~~~~~ccl~~~~~~~~~~~~ 272 (277)
+.++.+++.++-+-|-||+.|...|+--||+
T Consensus 38 lvI~~iFil~VilwfvCC~kRkrsRrPIYrP 68 (94)
T PF05393_consen 38 LVICGIFILLVILWFVCCKKRKRSRRPIYRP 68 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCcccc
Confidence 3344555666777889999998888877776
No 38
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=54.26 E-value=4.2 Score=37.73 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q 037581 233 KKEWKVLTIINVCVLVFIILIYSCGCYALRNNRSDK 268 (277)
Q Consensus 233 ~~~~~~~~~v~i~v~~i~i~~~~~~ccl~~~~~~~~ 268 (277)
.+.|...-+.+++|+++++++.+++||.+|..|+..
T Consensus 142 ~d~yL~T~IpaVVI~~iLLIA~iIa~icyrrkR~GK 177 (290)
T PF05454_consen 142 SDDYLHTFIPAVVIAAILLIAGIIACICYRRKRKGK 177 (290)
T ss_dssp ------------------------------------
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Confidence 344555556788888888889999999998655443
No 39
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=51.72 E-value=33 Score=26.05 Aligned_cols=41 Identities=17% Similarity=0.264 Sum_probs=28.5
Q ss_pred chHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHH-HHhhhhh
Q 037581 223 SCKAGVLVNIKK-------EWKVLTIINVCVLVFIILIYSC-GCYALRN 263 (277)
Q Consensus 223 ~C~~~i~~~l~~-------~~~~~~~v~i~v~~i~i~~~~~-~ccl~~~ 263 (277)
+|--.+.++=|+ -|+.+.+++.++..+.++|+++ +++-+|.
T Consensus 25 ACIFAfidFSK~~s~~~~~~wRalSii~FIlG~vl~lGilifs~y~~C~ 73 (91)
T PHA02680 25 ACVFAFVDFSKNTSNVTDYVWRALSVTCFIVGAVLLLGLFVFSMYRKCS 73 (91)
T ss_pred HHHHhhhhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 355555665553 3999999999999999999643 3444443
No 40
>PF11384 DUF3188: Protein of unknown function (DUF3188); InterPro: IPR021524 This bacterial family of proteins has no known function.
Probab=51.46 E-value=35 Score=23.07 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=15.8
Q ss_pred hhhchhHHHHHHHHHHHHHHh
Q 037581 42 KSLYTPLLVTAIFLSVLSLLG 62 (277)
Q Consensus 42 ~~~~~~~I~~G~~i~~is~lG 62 (277)
+....|.+.+|+++.+.+..+
T Consensus 22 ~i~~lP~~~~Gi~Lii~g~v~ 42 (49)
T PF11384_consen 22 RIQALPAILIGIGLIISGGVG 42 (49)
T ss_pred chhccHHHHHhHHHHhhhhhh
Confidence 455668899999888777655
No 41
>PRK12586 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=51.42 E-value=1.4e+02 Score=24.82 Aligned_cols=32 Identities=9% Similarity=0.074 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 037581 4 ASNIFVGFLSLCFLVLGIVALSFSLAIHFHGG 35 (277)
Q Consensus 4 ~~~~ll~~~N~l~~l~G~~ll~~Gi~~~~~~~ 35 (277)
..+-++-++-.++.++|..++.+|...+.+..
T Consensus 3 ~~~~~~~il~~ill~lG~~f~ligaIGllRfP 34 (145)
T PRK12586 3 ITKEIFSLIAAIMILLGSIIALISAIGIVKFQ 34 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34555667777888999998888888877765
No 42
>TIGR00941 2a6301s03 Multicomponent Na+:H+ antiporter, MnhC subunit.
Probab=50.87 E-value=46 Score=26.10 Aligned_cols=47 Identities=17% Similarity=0.125 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCccchhhhhchhHHHHHHHHHHHHHHh
Q 037581 13 SLCFLVLGIVALSFSLAIHFHGGTATACQKSLYTPLLVTAIFLSVLSLLG 62 (277)
Q Consensus 13 N~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~~~~~I~~G~~i~~is~lG 62 (277)
++++.+...+++++|+|+..+++ -....+...++.-|+.+++++.-+
T Consensus 2 ~~~~~~~~~~L~~~G~Y~il~~n---lir~iigl~i~~~~vnL~~v~~g~ 48 (104)
T TIGR00941 2 ESIFALIIGILTASGVYLLLSRS---VVRVVLGLALLGYAVNLFILTMGG 48 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677788888999999887543 111233334566777666666544
No 43
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=49.77 E-value=38 Score=25.90 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=27.0
Q ss_pred hHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHH
Q 037581 224 CKAGVLVNIKK------EWKVLTIINVCVLVFIILIYSCGC 258 (277)
Q Consensus 224 C~~~i~~~l~~------~~~~~~~v~i~v~~i~i~~~~~~c 258 (277)
|--.+.++-|+ -|+.+.+++.++.++.++|+++--
T Consensus 26 CIfAfidfsK~~~~~~~~wRalSii~FI~giil~lG~~i~s 66 (92)
T PF05767_consen 26 CIFAFIDFSKNTKPTDYTWRALSIICFILGIILTLGIVIFS 66 (92)
T ss_pred HHHHhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555443 599999999999999999998764
No 44
>PRK12660 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=49.02 E-value=1.3e+02 Score=23.77 Aligned_cols=49 Identities=12% Similarity=0.021 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCccchhhh-hchhHHHHHHHHHHHHHHhhhh
Q 037581 13 SLCFLVLGIVALSFSLAIHFHGGTATACQKS-LYTPLLVTAIFLSVLSLLGLIG 65 (277)
Q Consensus 13 N~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~-~~~~~I~~G~~i~~is~lGc~G 65 (277)
|++..+++..++++|+|+..+++ ..+. ...-++.-|+.++++++-+.-|
T Consensus 2 ~~~~~~~~~~Lf~iGiy~il~rn----li~~ligl~im~~avnL~~v~~g~~~~ 51 (114)
T PRK12660 2 NLILLLVIGFLVFIGTYMILSIN----LIRIVIGISIYTHAGNLIIMSMGGYGS 51 (114)
T ss_pred chHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 56777888889999999886442 2222 2223566677777777655543
No 45
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=46.90 E-value=42 Score=28.00 Aligned_cols=44 Identities=9% Similarity=0.178 Sum_probs=32.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccc
Q 037581 229 LVNIKKEWKVLTIINVCVLVFIILIYSCGCYALRNNRSDKRFSR 272 (277)
Q Consensus 229 ~~~l~~~~~~~~~v~i~v~~i~i~~~~~~ccl~~~~~~~~~~~~ 272 (277)
.+++.++...-..+.+++.++.++.+++....+-+.|.+.+||-
T Consensus 5 y~Yl~~q~~~~~~~~~~~i~~ll~~l~~~~~~Y~r~r~~tKyRD 48 (149)
T PF11694_consen 5 YDYLQSQQSQNDYLRYILIIILLLVLIFFFIKYLRNRLDTKYRD 48 (149)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh
Confidence 35666666666667777777777778888877877788887753
No 46
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=46.75 E-value=1e+02 Score=22.05 Aligned_cols=47 Identities=11% Similarity=0.207 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhhhhchhHHHHHHHHHHHHHH
Q 037581 4 ASNIFVGFLSLCFLVLGIVALSFSLAIHFHGGTATACQKSLYTPLLVTAIFLSVLSLL 61 (277)
Q Consensus 4 ~~~~ll~~~N~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~~~~~I~~G~~i~~is~l 61 (277)
.-|.+=-++-++.+++|...+.++.+..... ...+++|+.++++|++
T Consensus 6 ~fk~iW~~~DIi~Fila~i~i~it~F~~n~~-----------~g~i~i~I~l~l~G~i 52 (63)
T PF06341_consen 6 FFKTIWKYFDIILFILAMIFINITAFLINQI-----------AGLISIGITLFLAGLI 52 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence 4566666778888899988888888777321 2357777777776664
No 47
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=44.88 E-value=8.4 Score=37.37 Aligned_cols=33 Identities=30% Similarity=0.536 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhhhhhhccchhHHHHHHHHHHHH
Q 037581 53 IFLSVLSLLGLIGSCCKNNFLLYLYLIVLFLLI 85 (277)
Q Consensus 53 ~~i~~is~lGc~Ga~~e~~~lL~~y~~~l~ll~ 85 (277)
++.+++.+++++|..|+|||++..+.++=++.+
T Consensus 194 ~l~l~icl~~l~glar~Sk~~li~~~v~gll~l 226 (406)
T PF04906_consen 194 ILDLVICLLGLLGLARQSKCLLIVFSVLGLLAL 226 (406)
T ss_pred HHHHHHHHHHHHHHHhcCcceEEEeeeccHHHH
Confidence 456688899999999999999987766544333
No 48
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=43.58 E-value=48 Score=21.24 Aligned_cols=24 Identities=17% Similarity=0.429 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 037581 238 VLTIINVCVLVFIILIYSCGCYAL 261 (277)
Q Consensus 238 ~~~~v~i~v~~i~i~~~~~~ccl~ 261 (277)
++++|.+|++++-+.-+..+||-.
T Consensus 8 IIv~V~vg~~iiii~~~~YaCcyk 31 (38)
T PF02439_consen 8 IIVAVVVGMAIIIICMFYYACCYK 31 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455555555555555555555543
No 49
>PRK10209 acid-resistance membrane protein; Provisional
Probab=43.22 E-value=1.3e+02 Score=25.71 Aligned_cols=50 Identities=10% Similarity=0.017 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCccchhhhhchhHHHHHHHHHHHHHHhhhhhhhcc
Q 037581 15 CFLVLGIVALSFSLAIHFHGGTATACQKSLYTPLLVTAIFLSVLSLLGLIGSCCKN 70 (277)
Q Consensus 15 l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~~~~~I~~G~~i~~is~lGc~Ga~~e~ 70 (277)
.+.+.|++.+..|+.....+. . . .....+.+|..+++-|+....++.+.+
T Consensus 23 ~~li~Gil~ivlGi~~l~~P~---~--~-~~~~~~~~g~~ll~~Gi~~l~~~~~~~ 72 (190)
T PRK10209 23 AIQIIAVLLFIGGLLCLSFPF---V--S-GDALSTVVGILLICSGIALIVGLFANR 72 (190)
T ss_pred HHHHHHHHHHHHHHHHHHhHH---H--H-HHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 466789999999999887653 1 1 111236688888888888888766543
No 50
>PRK08600 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=42.89 E-value=65 Score=25.67 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCccchhhhhchhHHHHHHHHHHHHHHhh
Q 037581 14 LCFLVLGIVALSFSLAIHFHGGTATACQKSLYTPLLVTAIFLSVLSLLGL 63 (277)
Q Consensus 14 ~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~~~~~I~~G~~i~~is~lGc 63 (277)
.+..++..+++++|+|+..+++ -....+...++.-|+.+++++.-+.
T Consensus 3 ~~~~~~~~~L~~~G~ylll~rn---lik~iigl~i~~~~v~L~~v~~g~~ 49 (113)
T PRK08600 3 ILMIIVIGILTAIAVYLILSKS---LLRIIIGTTLLSHGANLLLLTMGGL 49 (113)
T ss_pred hHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4555666777889999887553 1112333345677776766665443
No 51
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=42.00 E-value=29 Score=31.38 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=18.5
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhh
Q 037581 45 YTPLLVTAIFLSVLSLLGLIGSCC 68 (277)
Q Consensus 45 ~~~~I~~G~~i~~is~lGc~Ga~~ 68 (277)
.+.++++|.++++.++++.+=.-|
T Consensus 226 wwi~~vlG~ll~lr~~i~YikVrr 249 (262)
T KOG4812|consen 226 WWIFLVLGLLLFLRGFINYIKVRR 249 (262)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhh
Confidence 345689999999999999765433
No 52
>PRK12659 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=41.98 E-value=71 Score=25.47 Aligned_cols=47 Identities=9% Similarity=-0.010 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCccchhhhhchhHHHHHHHHHHHHHHh
Q 037581 13 SLCFLVLGIVALSFSLAIHFHGGTATACQKSLYTPLLVTAIFLSVLSLLG 62 (277)
Q Consensus 13 N~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~~~~~I~~G~~i~~is~lG 62 (277)
|++..++..+++++|+|+..+++ -........++.-|+.++++++-+
T Consensus 2 ~~~~~~~~~~Lf~iG~y~il~rn---li~~ligl~im~~avnL~~v~~g~ 48 (117)
T PRK12659 2 EFLLAIVVGGLYAAGIYMMLRRS---IVKLVIGLILLGNAANLLIFTVGR 48 (117)
T ss_pred chHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45667778888999999886543 111222333566666666666654
No 53
>PF09971 DUF2206: Predicted membrane protein (DUF2206); InterPro: IPR018701 This family of predicted membrane proteins from archaea has no known function.
Probab=41.60 E-value=1.1e+02 Score=29.35 Aligned_cols=27 Identities=11% Similarity=-0.019 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhheeEeec
Q 037581 73 LLYLYLIVLFLLILGLCIFAVFVFAVTSN 101 (277)
Q Consensus 73 lL~~y~~~l~ll~l~el~~~i~~fv~~~~ 101 (277)
.+....+++.+.++.. .|..-.+..+.
T Consensus 217 ~~ki~~ifl~v~lLfn--sG~i~~i~~d~ 243 (367)
T PF09971_consen 217 SFKILSIFLAVFLLFN--SGFIYEIFGDP 243 (367)
T ss_pred HHHHHHHHHHHHHHHh--hhHHHHHhcCC
Confidence 4444555555555554 44443444443
No 54
>KOG4753 consensus Predicted membrane protein [Function unknown]
Probab=41.47 E-value=16 Score=29.44 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHH
Q 037581 47 PLLVTAIFLSVLSL 60 (277)
Q Consensus 47 ~~I~~G~~i~~is~ 60 (277)
+++++|+++|+=||
T Consensus 86 ~f~V~G~L~FiPGf 99 (124)
T KOG4753|consen 86 FFFVLGILLFIPGF 99 (124)
T ss_pred EEehhhhHhcccch
Confidence 44666666655443
No 55
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=39.60 E-value=86 Score=21.85 Aligned_cols=21 Identities=19% Similarity=0.127 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHhhhhhh
Q 037581 47 PLLVTAIFLSVLSLLGLIGSC 67 (277)
Q Consensus 47 ~~I~~G~~i~~is~lGc~Ga~ 67 (277)
.+.++|+.+++.++.|.|...
T Consensus 35 ~~~~~g~~ll~~g~~g~Cp~~ 55 (66)
T PF11127_consen 35 LLGFVGAMLLVTGITGFCPLY 55 (66)
T ss_pred HHHHHHHHHHHHHHHCcCHhH
Confidence 346677777777777776543
No 56
>PRK12658 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=39.52 E-value=63 Score=26.24 Aligned_cols=47 Identities=15% Similarity=0.066 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCccchhhhhchhHHHHHHHHHHHHHHh
Q 037581 13 SLCFLVLGIVALSFSLAIHFHGGTATACQKSLYTPLLVTAIFLSVLSLLG 62 (277)
Q Consensus 13 N~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~~~~~I~~G~~i~~is~lG 62 (277)
+++..++..+++++|+|+..+++ -....+...++.-|+.+++++.-+
T Consensus 2 ~~~~~~~~g~L~~~G~Ylil~rn---lir~iigl~il~~avnLlii~~g~ 48 (125)
T PRK12658 2 EALFAILVGVFFAAAIYLMLSRH---IIRILFGLALLGNAVNLLIFTAGR 48 (125)
T ss_pred chHHHHHHHHHHHHHHHHHhhch---HHHHHHHHHHHHHHHHHhhhhhcc
Confidence 45666777888999999888653 111233334566677676666544
No 57
>PF06772 LtrA: Bacterial low temperature requirement A protein (LtrA); InterPro: IPR010640 This entry consists of several bacteria specific low temperature requirement A (LtrA) protein sequences which have been found to be essential for growth at low temperatures in Listeria monocytogenes []. It also contains a number of uncharacterised fungal proteins.
Probab=39.44 E-value=2.2e+02 Score=26.65 Aligned_cols=55 Identities=20% Similarity=0.174 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCccchhhhhchhHHHHHHHHHHHHHHhhhhhhhcc
Q 037581 14 LCFLVLGIVALSFSLAIHFHGGTATACQKSLYTPLLVTAIFLSVLSLLGLIGSCCKN 70 (277)
Q Consensus 14 ~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~~~~~I~~G~~i~~is~lGc~Ga~~e~ 70 (277)
=+....|+.++++|+=..++.+. +.........+..|..++.++....--..++.
T Consensus 256 Hl~l~~givl~~~gl~~~v~~~~--~~~~~~~~~~~~~g~alfll~~~~~~~~~~~~ 310 (354)
T PF06772_consen 256 HLPLVAGIVLIAVGLELVVEHPV--AHSSPRWALALLGGVALFLLGLWLFRRRNKRR 310 (354)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 36677899999999877766542 21111112234778888888777665555443
No 58
>COG2245 Predicted membrane protein [Function unknown]
Probab=39.40 E-value=2.5e+02 Score=24.19 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhC
Q 037581 14 LCFLVLGIVALSFSLAIHFHG 34 (277)
Q Consensus 14 ~l~~l~G~~ll~~Gi~~~~~~ 34 (277)
.++-+.|.+++-+|+++..+.
T Consensus 28 ~ilSlVG~VLvlval~~iS~~ 48 (182)
T COG2245 28 WILSLVGLVLVLVALYMISKQ 48 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 357788999999999988764
No 59
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=39.37 E-value=40 Score=32.60 Aligned_cols=16 Identities=31% Similarity=0.582 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhh
Q 037581 48 LLVTAIFLSVLSLLGL 63 (277)
Q Consensus 48 ~I~~G~~i~~is~lGc 63 (277)
++++|++++++++++.
T Consensus 400 ~~~~~~i~~i~~~~~~ 415 (511)
T PF09972_consen 400 LIILGIILLILGFILL 415 (511)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666666666555
No 60
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=39.20 E-value=1.3e+02 Score=24.20 Aligned_cols=34 Identities=21% Similarity=0.247 Sum_probs=24.1
Q ss_pred hccchhHHHHHHHHHHHHHHHHHhHhhheeEeec
Q 037581 68 CKNNFLLYLYLIVLFLLILGLCIFAVFVFAVTSN 101 (277)
Q Consensus 68 ~e~~~lL~~y~~~l~ll~l~el~~~i~~fv~~~~ 101 (277)
-+.+.++..|+..+++++.+.+.++++.+..+++
T Consensus 52 s~~~pl~~~~~~~~~~v~~~~~~~avv~~~~~~~ 85 (237)
T PF02932_consen 52 SYAKPLDGWYFICTMFVFSASLEFAVVVYNIHHR 85 (237)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhccccchhhhHHHHhhhhhhhhccc
Confidence 4457888888888888877777777766666433
No 61
>PF05374 Mu-conotoxin: Mu-Conotoxin; InterPro: IPR008036 This entry represents Mu-type conotoxins. Cone snail toxins, conotoxins, are small peptides with disulphide connectivity, that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cystine knot scaffold. The knottin scaffold is a very special disulphide through disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network as well as specific amino acids in inter-cysteine loops provide specificity of conotoxin []. The cysteine arrangement is the same for omega, delta and kappa families, but omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangement, but the knottin scaffold is not observed. Conotoxin gm9a, a putative 27-residue polypeptide encoded by Conus gloriamaris, has been shown to adopt an inhibitory cystine knot motif constrained by three disulphide bonds [, ].Mu conotoxins target the voltage-gated sodium channels, preferential skeletal muscle [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangement [] and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1R9I_A 1GIB_A 1TCJ_A 1TCG_A 1TCK_A 1TCH_A.
Probab=38.63 E-value=14 Score=20.56 Aligned_cols=11 Identities=45% Similarity=1.337 Sum_probs=8.1
Q ss_pred cccCCCCCCCc
Q 037581 174 GCCKPPVACGF 184 (277)
Q Consensus 174 sCCkpp~~Cg~ 184 (277)
-||.+|.+|.-
T Consensus 2 ~CC~~Pk~Cks 12 (22)
T PF05374_consen 2 DCCGPPKSCKS 12 (22)
T ss_dssp TSSSSSTGGCS
T ss_pred cccCCCccccc
Confidence 38888888753
No 62
>PHA02898 virion envelope protein; Provisional
Probab=38.43 E-value=65 Score=24.56 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=22.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH
Q 037581 234 KEWKVLTIINVCVLVFIILIYSCGC 258 (277)
Q Consensus 234 ~~~~~~~~v~i~v~~i~i~~~~~~c 258 (277)
.-|+.+.+++.++..+.++|+++--
T Consensus 42 ~~wRalSii~FIlgivl~lG~~ifs 66 (92)
T PHA02898 42 SALRSISIISFILAIILILGIIFFK 66 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4599999999999999999998763
No 63
>PF15125 TMEM238: TMEM238 protein family
Probab=37.90 E-value=78 Score=22.70 Aligned_cols=45 Identities=27% Similarity=0.274 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCccchhhhhchhHHHHHHHHHHHHHHhhh
Q 037581 10 GFLSLCFLVLGIVALSFSLAIHFHGGTATACQKSLYTPLLVTAIFLSVLSLLGLI 64 (277)
Q Consensus 10 ~~~N~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~~~~~I~~G~~i~~is~lGc~ 64 (277)
+.+-++|=+.|++++-+|+..-.... + -++=.|+++..+|+++.+
T Consensus 7 f~laV~fD~vGl~~Ll~GiFa~l~f~------D----~lvY~GaliiflSL~~Wv 51 (65)
T PF15125_consen 7 FWLAVVFDVVGLVMLLTGIFAPLDFY------D----FLVYTGALIIFLSLLWWV 51 (65)
T ss_pred hHHHHHHHHhhHHHHHHHHhcchhHH------H----HHHHHhHHHHHHHHHHHH
Confidence 34566777888888888886654221 1 245667777777777653
No 64
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=37.55 E-value=87 Score=26.49 Aligned_cols=10 Identities=10% Similarity=0.261 Sum_probs=3.9
Q ss_pred HHHhHhhhee
Q 037581 88 LCIFAVFVFA 97 (277)
Q Consensus 88 el~~~i~~fv 97 (277)
.++.|+..+.
T Consensus 52 L~~~g~~~~~ 61 (191)
T PF04156_consen 52 LLSLGLLCLL 61 (191)
T ss_pred HHHHHHHHHH
Confidence 3334443333
No 65
>PRK09094 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=36.39 E-value=96 Score=24.76 Aligned_cols=46 Identities=17% Similarity=0.042 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCccchhhhhchhHHHHHHHHHHHHHHh
Q 037581 14 LCFLVLGIVALSFSLAIHFHGGTATACQKSLYTPLLVTAIFLSVLSLLG 62 (277)
Q Consensus 14 ~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~~~~~I~~G~~i~~is~lG 62 (277)
++..+...+++++|+|+..+++ -....+...++.-|+.+++++.-+
T Consensus 3 ~~~~~~~~~L~~~G~Y~il~rn---lir~iigl~il~~avnL~lv~~g~ 48 (114)
T PRK09094 3 LVLALAIGVLTASGVWLLLRPR---TFQVILGLSLLSYAVNLFIFAMGR 48 (114)
T ss_pred hHHHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455566677899999888653 122233334567777776666554
No 66
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=36.38 E-value=2.3e+02 Score=22.93 Aligned_cols=23 Identities=22% Similarity=0.457 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 037581 11 FLSLCFLVLGIVALSFSLAIHFH 33 (277)
Q Consensus 11 ~~N~l~~l~G~~ll~~Gi~~~~~ 33 (277)
.++-++..+|.++++.|+-..+.
T Consensus 31 ~~~~~l~~lGall~~~gii~fvA 53 (145)
T PF09925_consen 31 WLARILLYLGALLLGLGIILFVA 53 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888899999999877654
No 67
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=35.10 E-value=37 Score=24.38 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=16.3
Q ss_pred HHHHHHHH---HHHHHHHHHHHH
Q 037581 10 GFLSLCFL---VLGIVALSFSLA 29 (277)
Q Consensus 10 ~~~N~l~~---l~G~~ll~~Gi~ 29 (277)
..+|++++ +.|++++++|--
T Consensus 2 ~~ln~lwl~~~l~~l~v~tigPA 24 (77)
T PF04854_consen 2 VVLNLLWLLFTLAGLPVFTIGPA 24 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888 899999888764
No 68
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=34.36 E-value=53 Score=26.65 Aligned_cols=25 Identities=28% Similarity=0.277 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 037581 6 NIFVGFLSLCFLVLGIVALSFSLAI 30 (277)
Q Consensus 6 ~~ll~~~N~l~~l~G~~ll~~Gi~~ 30 (277)
||.+..+.++.+++|+++|+-+|-.
T Consensus 36 NysiL~Ls~vvlvi~~~LLgrsi~A 60 (125)
T PF15048_consen 36 NYSILALSFVVLVISFFLLGRSIQA 60 (125)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHh
Confidence 6667777777777777777777644
No 69
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=34.21 E-value=95 Score=19.91 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 037581 238 VLTIINVCVLVFIILIYSCGCYALRNNRSD 267 (277)
Q Consensus 238 ~~~~v~i~v~~i~i~~~~~~ccl~~~~~~~ 267 (277)
.++++.-+++.+-++.+.+-+++.+..|.+
T Consensus 5 ~IaIIv~V~vg~~iiii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 5 TIAIIVAVVVGMAIIIICMFYYACCYKKHR 34 (38)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 467777778888888888878888876654
No 70
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=33.92 E-value=47 Score=20.77 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhc
Q 037581 49 LVTAIFLSVLSLLGLIGSCCK 69 (277)
Q Consensus 49 I~~G~~i~~is~lGc~Ga~~e 69 (277)
+++|.+++++++-|....+++
T Consensus 13 l~~g~~l~~~~~tG~~~~f~~ 33 (37)
T PF13706_consen 13 LILGLLLFVIFLTGAVMVFRD 33 (37)
T ss_pred HHHHHHHHHHHHHhHHHHHHH
Confidence 788999999999998777654
No 71
>PHA03048 IMV membrane protein; Provisional
Probab=32.81 E-value=62 Score=24.71 Aligned_cols=30 Identities=10% Similarity=0.222 Sum_probs=23.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHH-HHhh-hhh
Q 037581 234 KEWKVLTIINVCVLVFIILIYSC-GCYA-LRN 263 (277)
Q Consensus 234 ~~~~~~~~v~i~v~~i~i~~~~~-~ccl-~~~ 263 (277)
.-|+.+.+++.++..+.++|+++ ++.- +|.
T Consensus 41 ~~wRalsii~FIlgivl~lG~~ifsmy~r~C~ 72 (93)
T PHA03048 41 TVWRALSGIAFVLGIVMTIGMLIYSMWGRYCT 72 (93)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 45899999999999999999865 4443 444
No 72
>PF15345 TMEM51: Transmembrane protein 51
Probab=31.65 E-value=54 Score=29.45 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHHH
Q 037581 46 TPLLVTAIFLSVLSLL 61 (277)
Q Consensus 46 ~~~I~~G~~i~~is~l 61 (277)
..++++|+++++++++
T Consensus 62 yVLVG~Gv~LLLLSIC 77 (233)
T PF15345_consen 62 YVLVGSGVALLLLSIC 77 (233)
T ss_pred EehhhHHHHHHHHHHH
Confidence 3478889999888883
No 73
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=31.39 E-value=64 Score=23.05 Aligned_cols=20 Identities=5% Similarity=0.149 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 037581 14 LCFLVLGIVALSFSLAIHFH 33 (277)
Q Consensus 14 ~l~~l~G~~ll~~Gi~~~~~ 33 (277)
.+.+++|+.++++|+|...+
T Consensus 48 ~ll~~vg~gli~~gi~~~~~ 67 (73)
T PF06724_consen 48 WLLGAVGLGLIGYGIWQFVK 67 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999998865
No 74
>COG4298 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.33 E-value=1.2e+02 Score=23.06 Aligned_cols=22 Identities=5% Similarity=0.018 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037581 10 GFLSLCFLVLGIVALSFSLAIH 31 (277)
Q Consensus 10 ~~~N~l~~l~G~~ll~~Gi~~~ 31 (277)
..||-.-+-+++.++++|||.+
T Consensus 17 i~f~waafg~s~~m~~~gi~~l 38 (95)
T COG4298 17 IMFNWAAFGASYFMLGLGIWLL 38 (95)
T ss_pred HhHHHHHHHHHHHHHHHHhhee
Confidence 3566677777788888888876
No 75
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=30.01 E-value=1e+02 Score=28.82 Aligned_cols=57 Identities=18% Similarity=0.333 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCccchhhhhc-------------hhHHHHHHHHHHHHHHhhhhhhhc
Q 037581 13 SLCFLVLGIVALSFSLAIHFHGGTATACQKSLY-------------TPLLVTAIFLSVLSLLGLIGSCCK 69 (277)
Q Consensus 13 N~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~~-------------~~~I~~G~~i~~is~lGc~Ga~~e 69 (277)
..+++++|+.++..++....++++-......+. .|-...|+++++++.+.-.|-.+.
T Consensus 2 e~~Y~l~Gl~~~~~a~~~~~Dk~np~R~gt~lFW~llg~~F~~G~~lp~~~~G~lvl~m~~la~~~~v~~ 71 (308)
T PF06166_consen 2 EIFYILIGLVFIITAVRSLRDKTNPKRIGTALFWGLLGLIFIFGDYLPPFVVGILVLVMALLAGFGQVGI 71 (308)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHHcCCCCC
Confidence 468899999999999999887653011111110 234778888888888776665543
No 76
>PRK02935 hypothetical protein; Provisional
Probab=29.98 E-value=1.8e+02 Score=22.98 Aligned_cols=29 Identities=7% Similarity=0.345 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhccchhHHHHHH
Q 037581 46 TPLLVTAIFLSVLSLLGLIGSCCKNNFLLYLYLI 79 (277)
Q Consensus 46 ~~~I~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~ 79 (277)
..++.+|.+++.+|++ +|+++.+..+|.+
T Consensus 17 L~lvfiG~~vMy~Gif-----f~~~~~~m~ifm~ 45 (110)
T PRK02935 17 LSLVFIGFIVMYLGIF-----FRESIIIMTIFML 45 (110)
T ss_pred HHHHHHHHHHHHHHHH-----hcccHHHHHHHHH
Confidence 3468888888888865 3777777766655
No 77
>PF13572 DUF4134: Domain of unknown function (DUF4134)
Probab=29.72 E-value=2.7e+02 Score=21.58 Aligned_cols=17 Identities=0% Similarity=0.075 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHhhhh
Q 037581 49 LVTAIFLSVLSLLGLIG 65 (277)
Q Consensus 49 I~~G~~i~~is~lGc~G 65 (277)
.++|+++-++|-+=.+-
T Consensus 48 yaI~aVvglIGai~VY~ 64 (98)
T PF13572_consen 48 YAIGAVVGLIGAIRVYI 64 (98)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444433333
No 78
>PF13980 UPF0370: Uncharacterised protein family (UPF0370)
Probab=28.95 E-value=63 Score=22.78 Aligned_cols=18 Identities=17% Similarity=0.363 Sum_probs=13.1
Q ss_pred HHHHHhhHHHHHHHHHHH
Q 037581 230 VNIKKEWKVLTIINVCVL 247 (277)
Q Consensus 230 ~~l~~~~~~~~~v~i~v~ 247 (277)
+|+.++|+++-++.+|++
T Consensus 2 ~WladYWWiiLl~lvG~i 19 (63)
T PF13980_consen 2 HWLADYWWIILLILVGMI 19 (63)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 588999998766555544
No 79
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=28.81 E-value=60 Score=23.76 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 037581 238 VLTIINVCVLVFIILIYSCGCYALRN 263 (277)
Q Consensus 238 ~~~~v~i~v~~i~i~~~~~~ccl~~~ 263 (277)
+++++..+++++.++.+++-+|-.|+
T Consensus 2 ii~~~~~g~~~ll~~v~~~~~~~rr~ 27 (75)
T PF14575_consen 2 IIASIIVGVLLLLVLVIIVIVCFRRC 27 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCTT-
T ss_pred EEehHHHHHHHHHHhheeEEEEEeeE
Confidence 45555666655555555544444443
No 80
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=28.65 E-value=32 Score=35.35 Aligned_cols=31 Identities=23% Similarity=0.223 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 037581 235 EWKVLTIINVCVLVFIILIYSCGCYALRNNR 265 (277)
Q Consensus 235 ~~~~~~~v~i~v~~i~i~~~~~~ccl~~~~~ 265 (277)
|.|++.+|.+.++++.++..++.++|-|..|
T Consensus 268 NlWII~gVlvPv~vV~~Iiiil~~~LCRk~K 298 (684)
T PF12877_consen 268 NLWIIAGVLVPVLVVLLIIIILYWKLCRKNK 298 (684)
T ss_pred CeEEEehHhHHHHHHHHHHHHHHHHHhcccc
Confidence 3445555678899999999999988887655
No 81
>KOG3488 consensus Dolichol phosphate-mannose regulatory protein (DPM2) [Posttranslational modification, protein turnover, chaperones]
Probab=28.62 E-value=99 Score=22.64 Aligned_cols=38 Identities=5% Similarity=0.161 Sum_probs=32.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 037581 230 VNIKKEWKVLTIINVCVLVFIILIYSCGCYALRNNRSD 267 (277)
Q Consensus 230 ~~l~~~~~~~~~v~i~v~~i~i~~~~~~ccl~~~~~~~ 267 (277)
-++-+.|-+.--++.+++.+-++|.++++-..++.++.
T Consensus 42 yFLpr~yAi~iPvaagl~ll~lig~Fis~vMlKskkKK 79 (81)
T KOG3488|consen 42 YFLPREYAITIPVAAGLFLLCLIGTFISLVMLKSKKKK 79 (81)
T ss_pred HhcChhHHhhhHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 46678888888899999999999999999988876553
No 82
>PF14979 TMEM52: Transmembrane 52
Probab=28.47 E-value=1.2e+02 Score=25.43 Aligned_cols=32 Identities=9% Similarity=0.143 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 037581 236 WKVLTIINVCVLVFIILIYSCGCYALRNNRSD 267 (277)
Q Consensus 236 ~~~~~~v~i~v~~i~i~~~~~~ccl~~~~~~~ 267 (277)
.+.|+.+.+.++++++.|...+|.-|+-.||+
T Consensus 19 LWyIwLill~~~llLLCG~ta~C~rfCClrk~ 50 (154)
T PF14979_consen 19 LWYIWLILLIGFLLLLCGLTASCVRFCCLRKQ 50 (154)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45667777788888888988886554444443
No 83
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=27.96 E-value=56 Score=23.00 Aligned_cols=15 Identities=13% Similarity=0.235 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHh
Q 037581 48 LLVTAIFLSVLSLLG 62 (277)
Q Consensus 48 ~I~~G~~i~~is~lG 62 (277)
+++.|++..++++++
T Consensus 44 ~ligG~va~ivGl~~ 58 (59)
T PF11381_consen 44 YLIGGAVAVIVGLFL 58 (59)
T ss_pred HHHhHHHHHHHHHhh
Confidence 477788888888764
No 84
>PF07343 DUF1475: Protein of unknown function (DUF1475); InterPro: IPR009943 This family consists of several hypothetical plant proteins of around 250 residues in length. Members of this family seem to be found exclusively in Arabidopsis thaliana. The function of this family is unknown.
Probab=27.15 E-value=4.5e+02 Score=23.85 Aligned_cols=72 Identities=19% Similarity=0.256 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhhhhchhHHHHHHHHH--HHHHHhhhhhhhccchhHHHHHHH
Q 037581 7 IFVGFLSLCFLVLGIVALSFSLAIHFHGGTATACQKSLYTPLLVTAIFLS--VLSLLGLIGSCCKNNFLLYLYLIV 80 (277)
Q Consensus 7 ~ll~~~N~l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~~~~~I~~G~~i~--~is~lGc~Ga~~e~~~lL~~y~~~ 80 (277)
......-++|-++|+.++++=+|...+.+. ....-+..|-.++-.+-| -+..+++-=+.||+......-=++
T Consensus 131 s~vv~ar~vf~iLGavMl~vliyt~iTdG~--pFr~~LltPWm~atLvDfYi~v~~~s~WV~~kEs~~~~~~~Wii 204 (254)
T PF07343_consen 131 SFVVTARIVFSILGAVMLFVLIYTLITDGS--PFRKELLTPWMVATLVDFYINVFAFSVWVWYKESSWISAILWII 204 (254)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhCCC--cchHHhcChHHHHHHHHHHHhHHhhhhhhheecccHHHHHHHHH
Confidence 334445578899999999999998776542 333335567554444444 344567777899998777643333
No 85
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=27.06 E-value=66 Score=29.25 Aligned_cols=29 Identities=21% Similarity=0.522 Sum_probs=23.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHhHhhheeE
Q 037581 70 NNFLLYLYLIVLFLLILGLCIFAVFVFAV 98 (277)
Q Consensus 70 ~~~lL~~y~~~l~ll~l~el~~~i~~fv~ 98 (277)
.+.+|.+|..+|++++++-++.++..+-+
T Consensus 33 RKrcLY~fvLlL~i~ivvNLalTiWIlkV 61 (292)
T KOG3950|consen 33 RKRCLYTFVLLLMILIVVNLALTIWILKV 61 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678889999999999999999887654
No 86
>PF13828 DUF4190: Domain of unknown function (DUF4190)
Probab=27.02 E-value=1.1e+02 Score=21.53 Aligned_cols=30 Identities=27% Similarity=0.294 Sum_probs=22.5
Q ss_pred HHHHHHHH-HHHHHHHHHHHHhhhhhccccc
Q 037581 239 LTIINVCV-LVFIILIYSCGCYALRNNRSDK 268 (277)
Q Consensus 239 ~~~v~i~v-~~i~i~~~~~~ccl~~~~~~~~ 268 (277)
.+++++.. .+.-+++.++|.-..+++||+.
T Consensus 8 lgi~~~~~~~~~~i~aiilG~ial~~i~r~~ 38 (62)
T PF13828_consen 8 LGILGLFLCGLLGIVAIILGHIALRQIRRSG 38 (62)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhccC
Confidence 34444333 4778899999999999998877
No 87
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=26.55 E-value=2.4e+02 Score=20.62 Aligned_cols=15 Identities=20% Similarity=0.419 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHH
Q 037581 15 CFLVLGIVALSFSLA 29 (277)
Q Consensus 15 l~~l~G~~ll~~Gi~ 29 (277)
+.+++|++++..|+.
T Consensus 47 ~~~v~gl~llv~G~~ 61 (82)
T PF11239_consen 47 LLVVVGLALLVAGVV 61 (82)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444556666666653
No 88
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=26.44 E-value=1.1e+02 Score=24.72 Aligned_cols=13 Identities=8% Similarity=-0.036 Sum_probs=5.6
Q ss_pred HHHHhhhhhcccc
Q 037581 255 SCGCYALRNNRSD 267 (277)
Q Consensus 255 ~~~ccl~~~~~~~ 267 (277)
+++.|+.|.+||.
T Consensus 83 li~y~irR~~Kk~ 95 (122)
T PF01102_consen 83 LISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHS---
T ss_pred HHHHHHHHHhccC
Confidence 4455556665553
No 89
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=26.12 E-value=66 Score=34.04 Aligned_cols=30 Identities=20% Similarity=0.133 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhhheeEeec
Q 037581 72 FLLYLYLIVLFLLILGLCIFAVFVFAVTSN 101 (277)
Q Consensus 72 ~lL~~y~~~l~ll~l~el~~~i~~fv~~~~ 101 (277)
|.=.+|.++|+++.++.++..+.+|+-.+.
T Consensus 137 c~R~~l~~~L~~~~~~il~g~i~aF~~n~~ 166 (806)
T PF05478_consen 137 CRRGCLGILLLLLTLIILFGVICAFVANQQ 166 (806)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666666666677777776443
No 90
>KOG3658 consensus Tumor necrosis factor-alpha-converting enzyme (TACE/ADAM17) and related metalloproteases [Extracellular structures]
Probab=25.99 E-value=81 Score=32.72 Aligned_cols=35 Identities=14% Similarity=0.325 Sum_probs=24.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 037581 227 GVLVNIKKEWKVLTIINVCVLVFIILIYSCGCYALRN 263 (277)
Q Consensus 227 ~i~~~l~~~~~~~~~v~i~v~~i~i~~~~~~ccl~~~ 263 (277)
.+.+|+..+|+.+++++++++++. ++.+.+|+...
T Consensus 674 ~~~~w~~~~w~~v~i~gi~~i~~m--~~fik~~aVht 708 (764)
T KOG3658|consen 674 TFAEWIVLNWLAVNIVGIVLIVLM--AFFIKICAVHT 708 (764)
T ss_pred hhHHHHHhhhHHhHhHHHHHHHHH--HHhhhheEEec
Confidence 456788899999998887776655 44556665443
No 91
>PRK10263 DNA translocase FtsK; Provisional
Probab=25.59 E-value=6.9e+02 Score=28.38 Aligned_cols=26 Identities=0% Similarity=-0.033 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037581 5 SNIFVGFLSLCFLVLGIVALSFSLAIH 31 (277)
Q Consensus 5 ~~~ll~~~N~l~~l~G~~ll~~Gi~~~ 31 (277)
+..++++|-+.-+++=+ ++.++.|..
T Consensus 72 AD~L~~LFGl~AYLLP~-LL~~~a~~l 97 (1355)
T PRK10263 72 ADTLFFIFGVMAYTIPV-IIVGGCWFA 97 (1355)
T ss_pred HHHHHHHHhHHHHHHHH-HHHHHHHHH
Confidence 44555555554444433 333444543
No 92
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=25.26 E-value=5.2e+02 Score=25.13 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHH
Q 037581 14 LCFLVLGIVALSFS 27 (277)
Q Consensus 14 ~l~~l~G~~ll~~G 27 (277)
.+++.+|.+.+.+|
T Consensus 275 klLg~vGgi~LliG 288 (389)
T PRK15033 275 VLLGTLGGIGLLIG 288 (389)
T ss_pred HHHHHHHHHHHHHH
Confidence 35566676666666
No 93
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=25.07 E-value=2e+02 Score=23.02 Aligned_cols=30 Identities=3% Similarity=0.373 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHH
Q 037581 46 TPLLVTAIFLSVLSLLGLIGSCCKNNFLLYLYLIV 80 (277)
Q Consensus 46 ~~~I~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~~ 80 (277)
..++.+|.+++.+|++ ++.++.++.+|+++
T Consensus 16 l~lif~g~~vmy~gi~-----f~~~~~im~ifmll 45 (114)
T PF11023_consen 16 LSLIFIGMIVMYIGIF-----FKASPIIMVIFMLL 45 (114)
T ss_pred HHHHHHHHHHHhhhhh-----hcccHHHHHHHHHH
Confidence 3467888888887653 45666555554443
No 94
>PRK10209 acid-resistance membrane protein; Provisional
Probab=25.03 E-value=4e+02 Score=22.71 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhccc
Q 037581 49 LVTAIFLSVLSLLGLIGSCCKNN 71 (277)
Q Consensus 49 I~~G~~i~~is~lGc~Ga~~e~~ 71 (277)
+.+|...++-|+.....|.+.++
T Consensus 109 ~l~g~~~iv~Gi~~i~~a~~~~~ 131 (190)
T PRK10209 109 AFIAGLFCVGGIIRLMSGYKQRK 131 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHccc
Confidence 56777788888888888876543
No 95
>PRK12661 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=24.93 E-value=1.7e+02 Score=24.18 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 037581 238 VLTIINVCVLVFIILIYSCGCYALRNNR 265 (277)
Q Consensus 238 ~~~~v~i~v~~i~i~~~~~~ccl~~~~~ 265 (277)
++..+-|+++..- +.++++.-.++..+
T Consensus 102 vLTAIVIG~a~tA-~~LaL~~r~y~~~g 128 (140)
T PRK12661 102 VLTAIVIGLATTA-FILILAYRIYEEYG 128 (140)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHhC
Confidence 3444444444322 34444445554433
No 96
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=24.72 E-value=3.3e+02 Score=26.83 Aligned_cols=15 Identities=27% Similarity=0.434 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhh
Q 037581 49 LVTAIFLSVLSLLGL 63 (277)
Q Consensus 49 I~~G~~i~~is~lGc 63 (277)
-++|+++++++|.|.
T Consensus 261 g~iG~i~LlL~f~g~ 275 (436)
T COG1030 261 GIIGAILLLLGFYGL 275 (436)
T ss_pred HHHHHHHHHHHHHHh
Confidence 466777777777664
No 97
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=24.42 E-value=1.3e+02 Score=23.61 Aligned_cols=39 Identities=21% Similarity=0.387 Sum_probs=21.1
Q ss_pred HhhHHHHHHHHHHHHH-HHHHHHHHHhhhhhccccccccc
Q 037581 234 KEWKVLTIINVCVLVF-IILIYSCGCYALRNNRSDKRFSR 272 (277)
Q Consensus 234 ~~~~~~~~v~i~v~~i-~i~~~~~~ccl~~~~~~~~~~~~ 272 (277)
+.|..+.+|.++++++ .++.++.=|-+.++.+..+..+|
T Consensus 15 ~sW~~LVGVv~~al~~SlLIalaaKC~~~~k~~~SY~H~r 54 (102)
T PF15176_consen 15 RSWPFLVGVVVTALVTSLLIALAAKCPVWYKYLASYRHHR 54 (102)
T ss_pred cccHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccccc
Confidence 4555555555554444 44455555767666655554443
No 98
>PF06168 DUF981: Protein of unknown function (DUF981); InterPro: IPR009324 This is a family of uncharacterised proteins found in bacteria and archaea.
Probab=24.38 E-value=4.8e+02 Score=22.74 Aligned_cols=47 Identities=23% Similarity=0.193 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCccchhhhhchhHHHHHHHHHHHHHH
Q 037581 15 CFLVLGIVALSFSLAIHFHGGTATACQKSLYTPLLVTAIFLSVLSLL 61 (277)
Q Consensus 15 l~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~~~~~I~~G~~i~~is~l 61 (277)
.|..+|+..+..|.|+.....--.+.+-....|....|++++..++.
T Consensus 44 ~f~~lG~~~litGl~~~~TWPLPgsYNIlFgd~~~lfGv~lL~~~~~ 90 (191)
T PF06168_consen 44 FFGALGLFALITGLWGTFTWPLPGSYNILFGDPWLLFGVLLLSAGLA 90 (191)
T ss_pred HHHHHHHHHHHHHHHheeeecCCCcccchHhhhHHHHHHHHHHHHHH
Confidence 45577777777788877654310122122344666677777666664
No 99
>PF13630 SdpI: SdpI/YhfL protein family
Probab=24.04 E-value=2.6e+02 Score=19.57 Aligned_cols=17 Identities=12% Similarity=0.368 Sum_probs=12.0
Q ss_pred chhHHHHHHHHHHHHHH
Q 037581 45 YTPLLVTAIFLSVLSLL 61 (277)
Q Consensus 45 ~~~~I~~G~~i~~is~l 61 (277)
....+..|+++++++++
T Consensus 31 g~~~~~~Gi~~~~~~~~ 47 (76)
T PF13630_consen 31 GKIFIIGGIVLLIIGII 47 (76)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33467888887777776
No 100
>PF14387 DUF4418: Domain of unknown function (DUF4418)
Probab=22.97 E-value=4e+02 Score=21.40 Aligned_cols=45 Identities=20% Similarity=0.327 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHhhCCCccchhhhhchhHHHHHHHHHHHH--HHhhh
Q 037581 18 VLGIVALSFSLAIHFHGGTATACQKSLYTPLLVTAIFLSVLS--LLGLI 64 (277)
Q Consensus 18 l~G~~ll~~Gi~~~~~~~~~~~~~~~~~~~~I~~G~~i~~is--~lGc~ 64 (277)
.+|++++..|+-....++ ......++...+++|++.+++. ++|.|
T Consensus 43 ~ig~vi~~~~li~~~~k~--~~~~~gl~i~~i~~gil~~lip~~lIG~C 89 (124)
T PF14387_consen 43 GIGAVIAVLSLIMLFVKN--KKARIGLSIANIALGILVILIPTVLIGVC 89 (124)
T ss_pred HHHHHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHhhcccccCC
Confidence 455556666665544432 1221223333566676666555 55554
No 101
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=22.86 E-value=2.8e+02 Score=19.49 Aligned_cols=13 Identities=15% Similarity=0.281 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHH
Q 037581 19 LGIVALSFSLAIH 31 (277)
Q Consensus 19 ~G~~ll~~Gi~~~ 31 (277)
.|+.++++|+-+.
T Consensus 16 t~l~l~~~g~~l~ 28 (73)
T PF02656_consen 16 TALALVGVGLALL 28 (73)
T ss_pred HHHHHHHHHHHHH
Confidence 5555556655444
No 102
>PF07343 DUF1475: Protein of unknown function (DUF1475); InterPro: IPR009943 This family consists of several hypothetical plant proteins of around 250 residues in length. Members of this family seem to be found exclusively in Arabidopsis thaliana. The function of this family is unknown.
Probab=22.84 E-value=5.8e+02 Score=23.15 Aligned_cols=77 Identities=21% Similarity=0.298 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCC-ccchhhhhchhHHHHHHHHHHHHHH--hhhhhhhccchhHHHHHHHHHHH
Q 037581 8 FVGFLSLCFLVLGIVALSFSLAIHFHGGT-ATACQKSLYTPLLVTAIFLSVLSLL--GLIGSCCKNNFLLYLYLIVLFLL 84 (277)
Q Consensus 8 ll~~~N~l~~l~G~~ll~~Gi~~~~~~~~-~~~~~~~~~~~~I~~G~~i~~is~l--Gc~Ga~~e~~~lL~~y~~~l~ll 84 (277)
++..+-.+|..+|+.+++.=+|.....+. ..+-.. +..|-+++-++-|=++++ .+.=+.||+..+-.++-++++++
T Consensus 6 ~~~~lr~ifaaLg~~mLa~LVyt~itdG~pf~~r~~-llTPWm~aTL~DfYin~v~~A~WI~ykE~nwlssi~Wivll~~ 84 (254)
T PF07343_consen 6 LANGLRAIFAALGCLMLATLVYTIITDGLPFSARAE-LLTPWMVATLIDFYINFVAIAAWIAYKESNWLSSIFWIVLLIC 84 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccc-ccChHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHH
Confidence 45556678889999999988887665432 111112 224655555554443333 34457899998888776665544
Q ss_pred H
Q 037581 85 I 85 (277)
Q Consensus 85 ~ 85 (277)
+
T Consensus 85 l 85 (254)
T PF07343_consen 85 L 85 (254)
T ss_pred h
Confidence 3
No 103
>COG1006 MnhC Multisubunit Na+/H+ antiporter, MnhC subunit [Inorganic ion transport and metabolism]
Probab=22.76 E-value=1.5e+02 Score=23.65 Aligned_cols=42 Identities=12% Similarity=0.108 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCccchhhhhchhHHHHHHHHHHHHH
Q 037581 16 FLVLGIVALSFSLAIHFHGGTATACQKSLYTPLLVTAIFLSVLSL 60 (277)
Q Consensus 16 ~~l~G~~ll~~Gi~~~~~~~~~~~~~~~~~~~~I~~G~~i~~is~ 60 (277)
+.++...++++|+|+..+++ -........++.-|+-+++++.
T Consensus 5 ~~~~~~~l~~iG~ylil~~n---lik~iigl~i~~~~vnL~i~~~ 46 (115)
T COG1006 5 LYLTIGILVGIGVYLLLSRN---LIKKIIGLSLIGTGVNLFLLLI 46 (115)
T ss_pred HHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHhhHHHHHhhh
Confidence 44555677899999776653 1222333345666766666654
No 104
>PF14340 DUF4395: Domain of unknown function (DUF4395)
Probab=22.63 E-value=1.1e+02 Score=24.79 Aligned_cols=31 Identities=13% Similarity=0.217 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHhhhhhccc
Q 037581 236 WKVLTIINVCVLVFIIL-IYSCGCYALRNNRS 266 (277)
Q Consensus 236 ~~~~~~v~i~v~~i~i~-~~~~~ccl~~~~~~ 266 (277)
..+++++.+..+.+|.. |+-+||-+|...+|
T Consensus 99 ~~i~~~~~~~aA~le~~fGfClGC~~y~~l~r 130 (131)
T PF14340_consen 99 GYILAAILLVAAFLEAAFGFCLGCFMYYQLKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHh
Confidence 34556677777888888 99999999887665
No 105
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=22.55 E-value=1.2e+02 Score=30.38 Aligned_cols=10 Identities=30% Similarity=0.836 Sum_probs=7.1
Q ss_pred ccCCCCCCCc
Q 037581 175 CCKPPVACGF 184 (277)
Q Consensus 175 CCkpp~~Cg~ 184 (277)
||+.-..|+.
T Consensus 118 CcCs~~~CN~ 127 (534)
T KOG3653|consen 118 CCCSTDFCNA 127 (534)
T ss_pred EecCCCcccC
Confidence 7766677875
No 106
>PRK05715 NADH:ubiquinone oxidoreductase subunit K; Validated
Probab=22.52 E-value=3.5e+02 Score=20.45 Aligned_cols=73 Identities=10% Similarity=0.189 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCccchhhh-hchhHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhHhhh
Q 037581 17 LVLGIVALSFSLAIHFHGGTATACQKS-LYTPLLVTAIFLSVLSLLGLIGSCCKNNFLLYLYLIVLFLLILGLCIFAVFV 95 (277)
Q Consensus 17 ~l~G~~ll~~Gi~~~~~~~~~~~~~~~-~~~~~I~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~~l~ll~l~el~~~i~~ 95 (277)
.+++..++.+|+|....+. +.... +..-++..|+.+++++.....+ + ..=-.+....+++-..|.+.+...
T Consensus 8 ~~~~~~lf~iGl~~~~~~~---~li~~Ll~lE~m~~~v~l~~~~~~~~~~----~-~~~~~l~l~~ivi~~~E~algLsl 79 (100)
T PRK05715 8 LILAAILFCIGLVGLLLRR---NAIVVLMSIELMLNAVNLNFVAFSSYLG----D-LDGQVFAFFVITVAAAEAAIGLAI 79 (100)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhC----C-cchHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888765432 22222 2223566677666666544431 1 111123333444555687777544
Q ss_pred ee
Q 037581 96 FA 97 (277)
Q Consensus 96 fv 97 (277)
.+
T Consensus 80 lv 81 (100)
T PRK05715 80 LL 81 (100)
T ss_pred HH
Confidence 43
No 107
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=22.50 E-value=2.6e+02 Score=25.06 Aligned_cols=42 Identities=24% Similarity=0.419 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhHhh
Q 037581 49 LVTAIFLSVLSLLGLIGSCCKNNFLLYLYLIVLFLLILGLCIFAVF 94 (277)
Q Consensus 49 I~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~~l~ll~l~el~~~i~ 94 (277)
+.+|+++..+..+-.+|-+..+ +.|..++.+++-+.++..+|
T Consensus 30 ~ml~a~l~~~~v~v~ig~l~~~----~~~~~i~gi~~g~l~am~vl 71 (224)
T PF13829_consen 30 LMLGAFLGPIAVFVLIGLLFGS----WWYWLIIGILLGLLAAMIVL 71 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc----HHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555655553 34555555554444444443
No 108
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=22.46 E-value=7.1e+02 Score=25.22 Aligned_cols=18 Identities=11% Similarity=0.130 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037581 12 LSLCFLVLGIVALSFSLA 29 (277)
Q Consensus 12 ~N~l~~l~G~~ll~~Gi~ 29 (277)
++++..+++-+.+..-++
T Consensus 401 i~Li~tiI~P~ti~~iIy 418 (527)
T PF03142_consen 401 IDLIGTIILPATIVFIIY 418 (527)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444544444443444444
No 109
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.27 E-value=3.7e+02 Score=25.13 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 037581 6 NIFVGFLSLCFLVLGIVALSFS 27 (277)
Q Consensus 6 ~~ll~~~N~l~~l~G~~ll~~G 27 (277)
|+..|+|.+++-+.=-++=++|
T Consensus 198 ~F~~FFF~y~~q~~~~v~qAvg 219 (313)
T KOG3088|consen 198 NFGAFFFTYFFQIVFCVFQAVG 219 (313)
T ss_pred hhHHHHHHHHHHHHHHHHHHHc
Confidence 5666666666554444444444
No 110
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=21.87 E-value=2.1e+02 Score=21.19 Aligned_cols=12 Identities=25% Similarity=0.282 Sum_probs=6.5
Q ss_pred hHhhheeEeecC
Q 037581 91 FAVFVFAVTSNS 102 (277)
Q Consensus 91 ~~i~~fv~~~~~ 102 (277)
++.++|.-.++.
T Consensus 59 ~~~~g~~k~~gl 70 (93)
T PF12666_consen 59 FAFLGFFKKDGL 70 (93)
T ss_pred HHHhHhhhhcCC
Confidence 455666655443
No 111
>KOG4556 consensus Predicted membrane protein [Function unknown]
Probab=20.71 E-value=3.2e+02 Score=23.65 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHH
Q 037581 46 TPLLVTAIFLSVLSLLGLIGSCCKNNFLLYLYLIVLFLLILGL 88 (277)
Q Consensus 46 ~~~I~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~~l~ll~l~e 88 (277)
+.-|..-.+=.++-++|..|+...++..|.+|+.-+.+-...-
T Consensus 31 WapilanFvhIiivIlGLFGtiQyR~ryl~~y~~w~alwVtwN 73 (205)
T KOG4556|consen 31 WAPILANFVHIIIVILGLFGTIQYRRRYLYTYASWLALWVTWN 73 (205)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHh
Confidence 3345555555666678889999999999999998877655543
No 112
>PRK08388 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=20.65 E-value=2.7e+02 Score=22.15 Aligned_cols=44 Identities=16% Similarity=0.171 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCccchhh-hhchhHHHHHHHHHHHHHH
Q 037581 15 CFLVLGIVALSFSLAIHFHGGTATACQK-SLYTPLLVTAIFLSVLSLL 61 (277)
Q Consensus 15 l~~l~G~~ll~~Gi~~~~~~~~~~~~~~-~~~~~~I~~G~~i~~is~l 61 (277)
+..+++++++++|+|....+. +..+ .....++.-|+.++++++-
T Consensus 4 ~~~~~~~~Lf~iGlygil~~r---nlir~ligl~im~~av~L~lv~~g 48 (119)
T PRK08388 4 FQFITAFLMIALGIYAFLYKR---NLIKLILALDLIDSGIHLLLISLG 48 (119)
T ss_pred HHHHHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566788999999776432 2222 2333456677766666653
No 113
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=20.33 E-value=1.4e+02 Score=27.81 Aligned_cols=30 Identities=7% Similarity=0.257 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccccccc
Q 037581 241 IINVCVLVFIILIYSCGCYALRNNRSDKRF 270 (277)
Q Consensus 241 ~v~i~v~~i~i~~~~~~ccl~~~~~~~~~~ 270 (277)
+.+++++++-++.+++-..|+|+.++..++
T Consensus 263 iaalvllil~vvliiLYiWlyrrRK~swkh 292 (295)
T TIGR01478 263 IAALVLIILTVVLIILYIWLYRRRKKSWKH 292 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 333444444444445556788776665544
Done!