Query 037581
Match_columns 277
No_of_seqs 197 out of 868
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 03:14:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037581.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037581hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g8q_A CD81 antigen, extracell 98.0 1.2E-06 4.1E-11 65.1 1.4 34 131-178 32-65 (90)
2 2jwa_A Receptor tyrosine-prote 64.3 12 0.00042 23.8 4.5 28 239-266 14-41 (44)
3 1r9i_A MU-conotoxin PIIIA; cys 43.9 7.6 0.00026 21.6 0.8 12 173-184 2-13 (26)
4 2l2t_A Receptor tyrosine-prote 35.3 67 0.0023 20.3 4.4 26 238-263 12-37 (44)
5 2l8s_A Integrin alpha-1; trans 26.4 1.2E+02 0.0042 19.9 4.7 31 236-266 10-41 (54)
6 3rko_K NADH-quinone oxidoreduc 25.6 1.9E+02 0.0065 20.9 8.7 75 17-98 8-82 (100)
7 2ks1_B Epidermal growth factor 25.0 79 0.0027 19.9 3.4 26 238-263 13-38 (44)
8 1gib_A MU-conotoxin GIIIB; neu 19.5 39 0.0013 18.6 0.9 11 174-184 2-12 (26)
9 2kog_A Vesicle-associated memb 16.8 1.4E+02 0.0049 22.6 4.0 22 237-258 97-118 (119)
10 2knc_A Integrin alpha-IIB; tra 16.3 2.4E+02 0.0084 18.4 4.6 30 236-265 13-43 (54)
No 1
>1g8q_A CD81 antigen, extracellular domain; alpha helical, immune system; 1.60A {Homo sapiens} SCOP: a.135.1.1 PDB: 1iv5_A
Probab=98.02 E-value=1.2e-06 Score=65.09 Aligned_cols=34 Identities=9% Similarity=0.165 Sum_probs=26.6
Q ss_pred CcChHHHhhhhhccccccccccCCCCCCChhhhhhccCCCCCccccCC
Q 037581 131 DKNWNEIRSCMIDSQVCKSLERNTNNNQTAADFFKRNLSPIQSGCCKP 178 (277)
Q Consensus 131 ~~~wd~iq~cl~~~~~Ccg~~~~~~~~~~~~d~~~~~~~~vp~sCCkp 178 (277)
+..||.+|+ .++|||.++ +.||.. .++|+|||.+
T Consensus 32 ~~~~d~iQ~----~l~CCG~~~-------~~Dw~~---~~vP~ScC~~ 65 (90)
T 1g8q_A 32 KAVVKTFHE----TLDCCGSST-------LTALTT---SVLKNNLCPS 65 (90)
T ss_dssp HHHHHHHHH----HHTCCSCTT-------CGGGHH---HHHHTTCSCT
T ss_pred HHHHHHHHH----hhcCCCCCC-------hhhhcc---CCCCCCCCCC
Confidence 568999987 999999876 478854 2489999953
No 2
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=64.27 E-value=12 Score=23.79 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 037581 239 LTIINVCVLVFIILIYSCGCYALRNNRS 266 (277)
Q Consensus 239 ~~~v~i~v~~i~i~~~~~~ccl~~~~~~ 266 (277)
+++..+|++++.+++.+++.++.|+..+
T Consensus 14 Ia~~vVGvll~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred hHHHHHHHHHHHHHHHHHHhheehhhhh
Confidence 3444455677777888888887776444
No 3
>1r9i_A MU-conotoxin PIIIA; cysteine knot; HET: PCA HYP CY3; NMR {Conus purpurascens} SCOP: j.30.1.1
Probab=43.93 E-value=7.6 Score=21.63 Aligned_cols=12 Identities=33% Similarity=0.783 Sum_probs=9.1
Q ss_pred ccccCCCCCCCc
Q 037581 173 SGCCKPPVACGF 184 (277)
Q Consensus 173 ~sCCkpp~~Cg~ 184 (277)
..||++|.+|.-
T Consensus 2 r~CC~~Pk~Cks 13 (26)
T 1r9i_A 2 RLCCGFPKSCRS 13 (26)
T ss_dssp CTTTTSTTGGGS
T ss_pred CcccCCCCcccc
Confidence 469999988853
No 4
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=35.35 E-value=67 Score=20.29 Aligned_cols=26 Identities=12% Similarity=0.241 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 037581 238 VLTIINVCVLVFIILIYSCGCYALRN 263 (277)
Q Consensus 238 ~~~~v~i~v~~i~i~~~~~~ccl~~~ 263 (277)
+.++|--+++++.+++.....++.|.
T Consensus 12 IA~gVVgGv~~v~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEeehHHHHHHHHHHHHHHHHhhhh
Confidence 44444445555555554444444443
No 5
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=26.36 E-value=1.2e+02 Score=19.94 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-Hhhhhhccc
Q 037581 236 WKVLTIINVCVLVFIILIYSCG-CYALRNNRS 266 (277)
Q Consensus 236 ~~~~~~v~i~v~~i~i~~~~~~-ccl~~~~~~ 266 (277)
|.++..+..|++++-++.+++= |-.|++.++
T Consensus 10 WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~~ 41 (54)
T 2l8s_A 10 WVILLSAFAGLLLLMLLILALWKIGFFKRPLK 41 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccCCCc
Confidence 5566666666666655555554 445554443
No 6
>3rko_K NADH-quinone oxidoreductase subunit K; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=25.65 E-value=1.9e+02 Score=20.89 Aligned_cols=75 Identities=11% Similarity=0.039 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCccchhhhhchhHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhHhhhe
Q 037581 17 LVLGIVALSFSLAIHFHGGTATACQKSLYTPLLVTAIFLSVLSLLGLIGSCCKNNFLLYLYLIVLFLLILGLCIFAVFVF 96 (277)
Q Consensus 17 ~l~G~~ll~~Gi~~~~~~~~~~~~~~~~~~~~I~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~~l~ll~l~el~~~i~~f 96 (277)
.+.+..+..+|+|....+.+ -.......-++..++.+.++.+.-..+. . .--.+..+.+++-.+|.+.|....
T Consensus 8 ~~~~~~lf~iGl~g~~~r~~--ll~~LlslE~m~l~v~l~l~~~~~~~~~----~-~~~~~~l~~l~~aa~E~alGLall 80 (100)
T 3rko_K 8 LILAAILFVLGLTGLVIRRN--LLFMLIGLEIMINASALAFVVAGSYWGQ----T-DGQVMYILAISLAAAEASIGLALL 80 (100)
T ss_dssp HHHHHHHHHHHHHHHHHCCB--HHHHHHHHHHHHHHHHHHHHHHHHHTTC----S-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHcCC----c-chHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888886654431 1111222234666666666555433321 1 111233444455556887776555
Q ss_pred eE
Q 037581 97 AV 98 (277)
Q Consensus 97 v~ 98 (277)
+.
T Consensus 81 v~ 82 (100)
T 3rko_K 81 LQ 82 (100)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 7
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=25.00 E-value=79 Score=19.94 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 037581 238 VLTIINVCVLVFIILIYSCGCYALRN 263 (277)
Q Consensus 238 ~~~~v~i~v~~i~i~~~~~~ccl~~~ 263 (277)
+.++|--+++++.+++..+..++.|.
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RRr 38 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRRR 38 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhhh
Confidence 34455555555555555545555443
No 8
>1gib_A MU-conotoxin GIIIB; neurotoxin, sodium channel inhibitor; HET: HYP; NMR {Conus geographus} SCOP: j.30.1.1 PDB: 1tcg_A* 1tcj_A* 1tch_A* 1tck_A*
Probab=19.50 E-value=39 Score=18.59 Aligned_cols=11 Identities=45% Similarity=1.268 Sum_probs=7.5
Q ss_pred cccCCCCCCCc
Q 037581 174 GCCKPPVACGF 184 (277)
Q Consensus 174 sCCkpp~~Cg~ 184 (277)
-||.||.+|.-
T Consensus 2 ~cc~~p~~ck~ 12 (26)
T 1gib_A 2 DCCTPPRKCKD 12 (26)
T ss_dssp CSSSSSCCCCS
T ss_pred cccCCCccccc
Confidence 37878777753
No 9
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=16.76 E-value=1.4e+02 Score=22.62 Aligned_cols=22 Identities=23% Similarity=0.390 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037581 237 KVLTIINVCVLVFIILIYSCGC 258 (277)
Q Consensus 237 ~~~~~v~i~v~~i~i~~~~~~c 258 (277)
+...+++++++++.++.++..|
T Consensus 97 K~~iii~~iv~iii~iIi~~~c 118 (119)
T 2kog_A 97 KMMIILGVICAIILIIIIVYFS 118 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhee
Confidence 3334444444444333333333
No 10
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=16.29 E-value=2.4e+02 Score=18.45 Aligned_cols=30 Identities=27% Similarity=0.356 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-Hhhhhhcc
Q 037581 236 WKVLTIINVCVLVFIILIYSCG-CYALRNNR 265 (277)
Q Consensus 236 ~~~~~~v~i~v~~i~i~~~~~~-ccl~~~~~ 265 (277)
|.++..+..|++++-++.+++= |-.|++.+
T Consensus 13 wiIi~svl~GLllL~li~~~LwK~GFFkR~~ 43 (54)
T 2knc_A 13 WWVLVGVLGGLLLLTILVLAMWKVGFFKRNR 43 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence 5566666666666665555554 44454444
Done!