BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037583
(504 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 217 bits (553), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 135/319 (42%), Positives = 193/319 (60%), Gaps = 15/319 (4%)
Query: 32 IGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDI 91
IGV YG + NNLPPP +V + K+ I R++L+D N L+A ++NI V + V D+
Sbjct: 1 IGVCYGMLGNNLPPPSEVVSLYKS-NNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDV 59
Query: 92 PALAKLP-AAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALD 150
+LA P AA W+ N++ + P FRYI +GNE++ SD L +LPAMR + +AL
Sbjct: 60 QSLASNPSAAGDWIRRNVVAYWPSVSFRYIAVGNELIPGSD--LAQYILPAMRNIYNALS 117
Query: 151 AANLSS-VQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPY 209
+A L + ++VST G+L TS PPS G F + + I++F +P +VN YPY
Sbjct: 118 SAGLQNQIKVSTAVDTGVLGTSYPPSAGAFSSA-AQAYLSPIVQFLASNGAPLLVNVYPY 176
Query: 210 FGFKPQ----TLNYALFKPNAGVFDPATGKNYTNMFDAQLDAVYSAMKKVGYEDVDIVVG 265
F + +L YALF +GV +Y N+FDA +DAV++A+++VG +V +VV
Sbjct: 177 FSYTGNPGQISLPYALFTA-SGVVVQDGRFSYQNLFDAIVDAVFAALERVGGANVAVVVS 235
Query: 266 ETGWPSAGDPNQPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNENLKPS 325
E+GWPSAG E++ +NA +YN NL++HV G GTP P + E YIF +FNEN K
Sbjct: 236 ESGWPSAG--GGAEASTSNAQTYNQNLIRHV--GGGTPRRPGKEIEAYIFEMFNENQKAG 291
Query: 326 ISEQNFGLFKPDFTPVYDV 344
EQNFGLF P+ PVY +
Sbjct: 292 GIEQNFGLFYPNKQPVYQI 310
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 198 bits (504), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 125/319 (39%), Positives = 185/319 (57%), Gaps = 21/319 (6%)
Query: 32 IGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDI 91
IGV YG I NNLP V +++ I+ ++++ A+ + L A ++ I + + +GN +
Sbjct: 1 IGVCYGVIGNNLPSRSDVVQLYRSKG-INGMRIYFADGQALSALRNSGIGLILDIGNDQL 59
Query: 92 PALAKLPA-AQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALD 150
+A + A SWV NN+ P++P +YI GNE+ + + S+LPAMR L +AL
Sbjct: 60 ANIAASTSNAASWVQNNVRPYYPAVNIKYIAAGNEVQGGATQ----SILPAMRNLNAALS 115
Query: 151 AANLSSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYF 210
AA L +++VST ++ S PPS G F+ Y + AR+L T +P + N YPYF
Sbjct: 116 AAGLGAIKVSTSIRFDEVANSFPPSAGVFKNAYMTDV-ARLLA---STGAPLLANVYPYF 171
Query: 211 GFKPQ----TLNYALFKPNAGVFDPATGKNYTNMFDAQLDAVYSAMKKVGYEDVDIVVGE 266
++ +LNYA F+P V D G YT++FDA +DAVY+A++K G V +VV E
Sbjct: 172 AYRDNPGSISLNYATFQPGTTVRDQNNGLTYTSLFDAMVDAVYAALEKAGAPAVKVVVSE 231
Query: 267 TGWPSAGDPNQPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNENLKPS- 325
+GWPSAG ++ NA +YN L+ HV G GTP E YIFA+FNEN K
Sbjct: 232 SGWPSAGG---FAASAGNARTYNQGLINHV--GGGTP-KKREALETYIFAMFNENQKTGD 285
Query: 326 ISEQNFGLFKPDFTPVYDV 344
+E++FGLF PD +P Y++
Sbjct: 286 ATERSFGLFNPDKSPAYNI 304
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 198 bits (503), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 122/320 (38%), Positives = 174/320 (54%), Gaps = 17/320 (5%)
Query: 32 IGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDI 91
IGV YG IANNLP Q V L I +++++ + A +NI + + V N D+
Sbjct: 3 IGVCYGKIANNLPSDQDVIK-LYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDL 61
Query: 92 PALAKLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLL-PAMRTLKSALD 150
ALA A WV +NI H P F+YI +GNE+ + A + PAM + +AL
Sbjct: 62 EALANPSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALS 121
Query: 151 AANLSS-VQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPY 209
+A L + ++VST G+L+ + PP FR+ Y I I+ F + P + N YPY
Sbjct: 122 SAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFI-NPIIGFLARHNLPLLANIYPY 180
Query: 210 FGFKPQT----LNYALFKPNAGVFDPATGKNYTNMFDAQLDAVYSAMKKVGYEDVDIVVG 265
FG T L+YALF Y N+FDA +D++Y A +K+G ++++I+V
Sbjct: 181 FGHIDNTNAVPLSYALFNQQR-----RNDTGYQNLFDALVDSMYFATEKLGGQNIEIIVS 235
Query: 266 ETGWPSAGDPNQPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNENLKP- 324
E+GWPS G P + L NA +Y NL+ HV G GTP P +T E Y+FA+F+EN K
Sbjct: 236 ESGWPSEG---HPAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKG 292
Query: 325 SISEQNFGLFKPDFTPVYDV 344
SE++FGLF PD P Y +
Sbjct: 293 EASEKHFGLFNPDQRPKYQL 312
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 195 bits (496), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 121/320 (37%), Positives = 173/320 (54%), Gaps = 17/320 (5%)
Query: 32 IGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDI 91
IGV YG IANNLP Q V L I +++++ + A +NI + + V N D+
Sbjct: 3 IGVCYGKIANNLPSDQDVIK-LYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDL 61
Query: 92 PALAKLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLL-PAMRTLKSALD 150
ALA A WV +NI H P F+YI +GNE+ + A + PAM + +AL
Sbjct: 62 EALANPSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALS 121
Query: 151 AANLSS-VQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPY 209
+A L + ++VST G+L+ + PP FR+ Y I I+ F + P + N YPY
Sbjct: 122 SAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFI-NPIIGFLARHNLPLLANIYPY 180
Query: 210 FGFKPQT----LNYALFKPNAGVFDPATGKNYTNMFDAQLDAVYSAMKKVGYEDVDIVVG 265
FG T L+YALF Y N+FDA +D++Y A +K+G ++++I+V
Sbjct: 181 FGHIDNTNAVPLSYALFNQQR-----RNDTGYQNLFDALVDSMYFATEKLGGQNIEIIVS 235
Query: 266 ETGWPSAGDPNQPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNENLKP- 324
+GWPS G P + L NA +Y NL+ HV G GTP P +T E Y+FA+F+EN K
Sbjct: 236 ASGWPSEG---HPAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKG 292
Query: 325 SISEQNFGLFKPDFTPVYDV 344
SE++FGLF PD P Y +
Sbjct: 293 EASEKHFGLFNPDQRPKYQL 312
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 192 bits (488), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 121/321 (37%), Positives = 176/321 (54%), Gaps = 17/321 (5%)
Query: 32 IGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDI 91
+GV YG NNLPP +V K ++ I R++++D N L A +NI + + V N D+
Sbjct: 2 VGVCYGMQGNNLPPVSEVIALYK-KSNITRMRIYDPNQAVLEALRGSNIELILGVPNSDL 60
Query: 92 PALAKLPAAQSWVANNILPHHPQTIFRYIVLGNEI--LATSDKVLIASLLPAMRTLKSAL 149
+L A+SWV N+ FRYI +GNEI + L +LPAMR + A+
Sbjct: 61 QSLTNPSNAKSWVQKNVRGFWSSVRFRYIAVGNEISPVNRGTAWLAQFVLPAMRNIHDAI 120
Query: 150 DAANLS-SVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYP 208
+A L ++VST L ++ S PPS G FR R I+ F +SP + N YP
Sbjct: 121 RSAGLQDQIKVSTAIDLTLVGNSYPPSAGAFRDDV-RSYLNPIIRFLSSIRSPLLANIYP 179
Query: 209 YFGF----KPQTLNYALF-KPNAGVFDPATGKNYTNMFDAQLDAVYSAMKKVGYEDVDIV 263
YF + + +L YALF P+ V+D G Y N+FDA LDA+YSA+++ +++V
Sbjct: 180 YFTYAGNPRDISLPYALFTSPSVVVWDGQRG--YKNLFDATLDALYSALERASGGSLEVV 237
Query: 264 VGETGWPSAGDPNQPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNENLK 323
V E+GWPSAG + N +Y NL++HV +GTP P R E Y+FA+F+EN K
Sbjct: 238 VSESGWPSAG---AFAATFDNGRTYLSNLIQHVK--RGTPKRPKRAIETYLFAMFDENKK 292
Query: 324 PSISEQNFGLFKPDFTPVYDV 344
E++FGLF P+ Y++
Sbjct: 293 QPEVEKHFGLFFPNKWQKYNL 313
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 182 bits (461), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 128/319 (40%), Positives = 174/319 (54%), Gaps = 21/319 (6%)
Query: 32 IGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDI 91
IGV YG ANNLP V + K+ I ++L+ N L+A T I V V N +
Sbjct: 1 IGVCYGMSANNLPAASTVVSMFKSNG-IKSMRLYAPNQAALQAVGGTGINVVVGAPNDVL 59
Query: 92 PALAKLPAAQS-WVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALD 150
LA PAA + WV +NI + P+ FRY+ +GNE+ + + +L+PAM+ + AL
Sbjct: 60 SNLAASPAAAASWVKSNIQAY-PKVSFRYVCVGNEVAGGATR----NLVPAMKNVHGALV 114
Query: 151 AANLSSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPY- 209
AA L ++V+T S IL PPS G F G +++F +T +P M N YPY
Sbjct: 115 AAGLGHIKVTTSVSQAILGVFSPPSAGSF-TGEAAAFMGPVVQFLARTNAPLMANIYPYL 173
Query: 210 -FGFKPQTLN--YALFKPNAGVF-DPATGKNYTNMFDAQLDAVYSAMKKVGYEDVDIVVG 265
+ + P ++ YALF + V D A G Y N+FD +DA Y+AM K G V +VV
Sbjct: 174 AWAYNPSAMDMGYALFNASGTVVRDGAYG--YQNLFDTTVDAFYTAMGKHGGSSVKLVVS 231
Query: 266 ETGWPSAGDPNQPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNENLKPS 325
E+GWPS G + ANA YN +L+ HV G+GTP P E YIFA+FNEN K S
Sbjct: 232 ESGWPSGGG---TAATPANARFYNQHLINHV--GRGTPRHPG-AIETYIFAMFNENQKDS 285
Query: 326 ISEQNFGLFKPDFTPVYDV 344
EQN+GLF P+ VY +
Sbjct: 286 GVEQNWGLFYPNMQHVYPI 304
>pdb|2JON|A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9
Length = 101
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 58/85 (68%)
Query: 381 KWCVPKSDASDAALQANIDYVCGTGVDCKPIQAGGPCFNPNNVRSHAAYAMNAFYQANGL 440
WCVPK SD L NI+Y C G+DC PIQ GG CF PN V++HAAY MN +YQ G
Sbjct: 12 SWCVPKPGVSDDQLTGNINYACSQGIDCGPIQPGGACFEPNTVKAHAAYVMNLYYQHAGR 71
Query: 441 HDYACDFNKTGVLTSADPSYEACDY 465
+ + CDF++T LT+ +PSY AC++
Sbjct: 72 NSWNCDFSQTATLTNTNPSYGACNF 96
>pdb|3NAW|A Chain A, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NAW|B Chain B, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|A Chain A, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|B Chain B, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|C Chain C, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|D Chain D, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
Length = 613
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 286 LSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNENLKPSISEQNFGLF----KPDFTPV 341
+SYN + ++ V +G M R E+Y L NE + P + +FGL KPD+
Sbjct: 299 VSYNSSFIQIVMNGSRRDGMQERFRELYEVYLKNEKVYPVTQQSDFGLCDGSGKPDWDDD 358
Query: 342 YDVG---ILRNKQAQGPA 356
D+ +L + Q G A
Sbjct: 359 SDLAYNWVLLSSQDDGMA 376
>pdb|3SQV|A Chain A, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|B Chain B, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
Length = 616
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 286 LSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNENLKPSISEQNFGLF----KPDFTPV 341
+SYN + ++ V +G M R E+Y L NE + P + +FGL KPD+
Sbjct: 302 VSYNSSFIQIVMNGSRRDGMQERFRELYEVYLKNEKVYPVTQQSDFGLCDGSGKPDWDDD 361
Query: 342 YDVG---ILRNKQAQGPA 356
D+ +L + Q G A
Sbjct: 362 SDLAYNWVLLSSQDDGMA 379
>pdb|1DDZ|A Chain A, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red
Alga, Porphyridium Purpureum R-1
pdb|1DDZ|B Chain B, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red
Alga, Porphyridium Purpureum R-1
Length = 496
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 61 RVKLFDANPEFLRAFAHTNIPVTVTVGNGD--IPA--LAKLPAAQSWVANNI 108
R K+ +P+F AHT P + +G D +PA + LPA + +V NI
Sbjct: 301 RQKMLKQDPQFFSNLAHTQTPEILWIGCADSRVPANQIINLPAGEVFVHRNI 352
>pdb|1TMO|A Chain A, Trimethylamine N-Oxide Reductase From Shewanella Massilia
Length = 829
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 240 MFDAQLDAVYSAMKKVGYEDVDIVVGETGWPSAGDPNQPESNLANALSYNGNLVKHV--- 296
+F LD V + G + G+TGW + G + S++ A+ +GN VK +
Sbjct: 125 LFKHSLDEVQTQYGPSG-----LHAGQTGWRATGQLHSSTSHMQRAVGMHGNYVKKIGDY 179
Query: 297 NSGKGTPLMP 306
++G G ++P
Sbjct: 180 STGAGQTILP 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,391,474
Number of Sequences: 62578
Number of extensions: 676888
Number of successful extensions: 1437
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1389
Number of HSP's gapped (non-prelim): 15
length of query: 504
length of database: 14,973,337
effective HSP length: 103
effective length of query: 401
effective length of database: 8,527,803
effective search space: 3419649003
effective search space used: 3419649003
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)