Query 037583
Match_columns 504
No_of_seqs 271 out of 1621
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 02:26:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037583.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037583hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 2E-80 4.3E-85 632.9 19.4 303 32-346 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 1.2E-43 2.6E-48 345.1 24.1 252 28-338 42-305 (305)
3 smart00768 X8 Possibly involve 100.0 1.6E-28 3.5E-33 205.6 8.5 85 381-465 1-85 (85)
4 PF07983 X8: X8 domain; Inter 99.8 3.6E-21 7.9E-26 158.5 6.1 68 381-452 1-78 (78)
5 PF03198 Glyco_hydro_72: Gluca 99.8 1.5E-19 3.2E-24 182.4 11.3 236 32-340 30-295 (314)
6 PF07745 Glyco_hydro_53: Glyco 99.0 1.3E-08 2.8E-13 105.4 15.7 243 46-343 26-328 (332)
7 COG3867 Arabinogalactan endo-1 98.3 1E-05 2.2E-10 81.6 14.0 205 46-298 65-328 (403)
8 PF00150 Cellulase: Cellulase 98.0 0.00032 6.9E-09 69.6 17.6 122 31-155 10-165 (281)
9 PRK10150 beta-D-glucuronidase; 98.0 0.0013 2.8E-08 73.8 23.0 256 32-345 295-586 (604)
10 smart00633 Glyco_10 Glycosyl h 97.4 0.011 2.3E-07 59.2 18.1 79 249-344 172-251 (254)
11 PF11790 Glyco_hydro_cc: Glyco 97.0 0.042 9.1E-07 54.7 17.2 165 115-339 64-231 (239)
12 PF02836 Glyco_hydro_2_C: Glyc 96.2 0.23 5E-06 50.6 16.8 95 31-126 17-132 (298)
13 TIGR03356 BGL beta-galactosida 95.5 1 2.2E-05 48.7 18.9 78 47-127 57-163 (427)
14 PRK10340 ebgA cryptic beta-D-g 92.4 4.5 9.8E-05 48.6 17.2 96 31-127 336-451 (1021)
15 PF02449 Glyco_hydro_42: Beta- 83.1 2.6 5.7E-05 44.5 6.4 82 46-128 12-140 (374)
16 cd02875 GH18_chitobiase Chitob 76.4 12 0.00026 39.5 8.8 96 58-155 55-151 (358)
17 PRK09936 hypothetical protein; 75.1 15 0.00033 37.8 8.7 58 32-89 22-95 (296)
18 PF03662 Glyco_hydro_79n: Glyc 73.0 11 0.00023 39.5 7.2 174 70-276 113-302 (319)
19 PF00232 Glyco_hydro_1: Glycos 70.1 3.2 6.9E-05 45.2 2.7 115 46-165 60-223 (455)
20 COG3934 Endo-beta-mannanase [C 69.5 27 0.00059 38.4 9.3 183 102-344 124-312 (587)
21 PRK09525 lacZ beta-D-galactosi 68.4 23 0.00049 42.8 9.5 96 31-127 352-464 (1027)
22 PF00925 GTP_cyclohydro2: GTP 62.8 7.2 0.00016 36.8 3.2 37 50-87 132-168 (169)
23 PLN03059 beta-galactosidase; P 59.0 68 0.0015 37.9 10.6 113 49-164 64-223 (840)
24 smart00481 POLIIIAc DNA polyme 53.7 39 0.00085 26.2 5.5 44 44-88 15-63 (67)
25 COG4782 Uncharacterized protei 49.8 55 0.0012 34.9 7.3 44 253-299 141-187 (377)
26 TIGR00505 ribA GTP cyclohydrol 47.7 25 0.00055 33.8 4.2 33 50-83 131-163 (191)
27 PRK00393 ribA GTP cyclohydrola 47.0 26 0.00056 34.0 4.2 33 50-83 134-166 (197)
28 PRK13511 6-phospho-beta-galact 46.1 47 0.001 36.5 6.5 47 46-93 56-121 (469)
29 PLN02998 beta-glucosidase 41.9 49 0.0011 36.7 5.9 75 257-339 390-466 (497)
30 PRK09589 celA 6-phospho-beta-g 41.0 62 0.0013 35.7 6.5 46 46-92 69-134 (476)
31 PF14488 DUF4434: Domain of un 39.7 44 0.00096 31.5 4.5 20 70-89 69-88 (166)
32 PRK12485 bifunctional 3,4-dihy 39.3 31 0.00068 36.8 3.7 33 50-84 331-363 (369)
33 PLN02849 beta-glucosidase 39.3 1.1E+02 0.0025 33.9 8.2 75 257-339 383-461 (503)
34 PLN02814 beta-glucosidase 39.0 1.1E+02 0.0024 34.1 8.0 75 257-339 385-461 (504)
35 PF01229 Glyco_hydro_39: Glyco 37.4 4.9E+02 0.011 28.6 12.8 246 55-342 50-351 (486)
36 PF05990 DUF900: Alpha/beta hy 37.3 1.5E+02 0.0032 29.3 7.9 43 253-298 43-88 (233)
37 PRK14019 bifunctional 3,4-dihy 36.5 37 0.0008 36.2 3.7 36 50-87 328-363 (367)
38 cd00641 GTP_cyclohydro2 GTP cy 36.5 47 0.001 32.0 4.1 34 50-84 133-166 (193)
39 cd06418 GH25_BacA-like BacA is 35.1 4.4E+02 0.0096 25.8 11.5 106 44-155 21-143 (212)
40 COG0621 MiaB 2-methylthioadeni 34.6 5.4E+02 0.012 28.2 12.3 136 31-216 195-341 (437)
41 PRK15014 6-phospho-beta-glucos 34.5 75 0.0016 35.1 5.8 75 259-339 368-448 (477)
42 PRK14332 (dimethylallyl)adenos 32.9 4.4E+02 0.0095 28.8 11.4 200 36-269 177-397 (449)
43 PRK09314 bifunctional 3,4-dihy 32.9 49 0.0011 34.9 3.9 34 49-83 300-334 (339)
44 cd02874 GH18_CFLE_spore_hydrol 32.8 1.1E+02 0.0023 31.3 6.4 82 69-154 48-138 (313)
45 PRK09318 bifunctional 3,4-dihy 32.8 53 0.0012 35.3 4.2 38 50-88 320-357 (387)
46 PRK08815 GTP cyclohydrolase; P 31.9 56 0.0012 35.0 4.2 37 50-87 305-341 (375)
47 COG4669 EscJ Type III secretor 31.8 1.8E+02 0.0038 29.4 7.3 116 45-179 32-151 (246)
48 PRK09311 bifunctional 3,4-dihy 31.6 57 0.0012 35.2 4.2 37 50-87 339-375 (402)
49 TIGR01579 MiaB-like-C MiaB-lik 31.5 6.6E+02 0.014 26.8 12.6 144 43-215 166-333 (414)
50 PRK09593 arb 6-phospho-beta-gl 31.5 1.3E+02 0.0028 33.3 7.0 75 259-339 368-448 (478)
51 PLN02831 Bifunctional GTP cycl 31.3 56 0.0012 35.8 4.2 37 50-87 373-409 (450)
52 COG2730 BglC Endoglucanase [Ca 31.1 3E+02 0.0064 29.6 9.7 105 47-153 76-219 (407)
53 PRK09319 bifunctional 3,4-dihy 30.7 59 0.0013 36.5 4.2 38 50-88 343-380 (555)
54 PF14871 GHL6: Hypothetical gl 30.4 98 0.0021 28.1 5.0 43 45-88 1-66 (132)
55 TIGR03632 bact_S11 30S ribosom 29.1 1.1E+02 0.0023 26.9 4.8 37 47-84 50-91 (108)
56 PRK09852 cryptic 6-phospho-bet 29.0 1.3E+02 0.0028 33.2 6.5 46 47-93 74-139 (474)
57 PRK09989 hypothetical protein; 28.9 4.7E+02 0.01 25.7 10.1 120 32-154 4-138 (258)
58 KOG0626 Beta-glucosidase, lact 28.6 1.3E+02 0.0029 33.6 6.4 76 255-337 403-486 (524)
59 COG1433 Uncharacterized conser 27.9 1.1E+02 0.0023 27.6 4.6 40 47-87 55-94 (121)
60 PF00834 Ribul_P_3_epim: Ribul 27.6 4.9E+02 0.011 25.2 9.6 98 45-159 68-171 (201)
61 PRK14327 (dimethylallyl)adenos 26.5 8E+02 0.017 27.4 12.2 144 44-216 241-408 (509)
62 PRK14334 (dimethylallyl)adenos 25.9 4.5E+02 0.0097 28.5 10.0 140 44-212 167-329 (440)
63 PF13547 GTA_TIM: GTA TIM-barr 25.8 1.3E+02 0.0027 31.2 5.2 82 115-210 18-110 (299)
64 TIGR01233 lacG 6-phospho-beta- 25.7 2.3E+02 0.0051 31.1 7.8 47 46-93 55-120 (467)
65 PLN00196 alpha-amylase; Provis 25.3 1.6E+02 0.0034 32.2 6.3 56 32-88 29-114 (428)
66 cd02872 GH18_chitolectin_chito 25.1 3.8E+02 0.0082 27.9 9.0 74 78-152 69-150 (362)
67 PRK13347 coproporphyrinogen II 25.0 87 0.0019 34.1 4.3 24 135-158 262-285 (453)
68 PRK14328 (dimethylallyl)adenos 24.7 4.8E+02 0.01 28.2 9.9 61 133-212 279-339 (439)
69 cd04743 NPD_PKS 2-Nitropropane 24.6 4E+02 0.0086 28.0 8.8 80 29-126 55-134 (320)
70 COG4213 XylF ABC-type xylose t 24.2 1.6E+02 0.0034 31.0 5.6 76 69-163 175-251 (341)
71 PRK06552 keto-hydroxyglutarate 23.4 7E+02 0.015 24.4 10.0 88 45-150 118-210 (213)
72 COG0807 RibA GTP cyclohydrolas 23.3 1.3E+02 0.0029 29.2 4.7 39 50-89 133-171 (193)
73 TIGR02764 spore_ybaN_pdaB poly 22.6 4E+02 0.0086 24.9 7.9 80 61-155 97-183 (191)
74 TIGR03628 arch_S11P archaeal r 22.6 1.6E+02 0.0035 26.2 4.7 37 47-84 53-102 (114)
75 PRK07198 hypothetical protein; 22.1 68 0.0015 34.6 2.6 37 50-87 338-375 (418)
76 PF00411 Ribosomal_S11: Riboso 21.9 1.4E+02 0.003 26.1 4.2 36 48-84 51-91 (110)
77 COG3250 LacZ Beta-galactosidas 21.7 2.8E+02 0.006 32.9 7.7 96 32-128 303-409 (808)
78 PF00331 Glyco_hydro_10: Glyco 21.5 1.5E+02 0.0032 30.8 5.0 221 70-343 63-312 (320)
79 cd00598 GH18_chitinase-like Th 21.4 1.9E+02 0.0041 27.1 5.5 84 70-154 53-142 (210)
80 PRK09997 hydroxypyruvate isome 21.1 7.8E+02 0.017 24.1 11.0 118 34-154 6-138 (258)
81 PRK14330 (dimethylallyl)adenos 21.1 9E+02 0.02 26.0 11.2 80 117-215 250-335 (434)
82 CHL00041 rps11 ribosomal prote 20.3 2E+02 0.0043 25.6 4.9 35 48-83 64-103 (116)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=2e-80 Score=632.90 Aligned_cols=303 Identities=52% Similarity=0.902 Sum_probs=246.9
Q ss_pred eeEEecCCCCCCCCHHHHHHHHHhcCCCCEEEEccCCHHHHHHHhcCCCcEEEEeCCCCcccc-CChHHHHHHHHhhccC
Q 037583 32 IGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPAL-AKLPAAQSWVANNILP 110 (504)
Q Consensus 32 ~GVnYg~~~~nlps~~~vv~ll~k~~~i~~VRiY~~d~~vL~A~a~tgi~V~lGV~n~~~~~~-~~~~~A~~Wv~~~v~~ 110 (504)
+|||||+.++|||+|.+|+++| |+++|++||||++|+++|+|++++||+|++||+|+++.++ +++..|..|++++|.+
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~-ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~ 79 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLL-KSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLP 79 (310)
T ss_dssp EEEEE---SSS---HHHHHHHH-HHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCT
T ss_pred CeEeccCccCCCCCHHHHHHHH-HhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhcccc
Confidence 6999999999999999999999 9999999999999999999999999999999999999999 7889999999999999
Q ss_pred CCCCCeEEEEEeccccccCCCcchHHHHHHHHHHHHHHHHHcCCC-ceeeeccccccccccCCCCCcccccccchhHHHH
Q 037583 111 HHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLS-SVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFA 189 (504)
Q Consensus 111 y~p~~~I~~I~VGNEvl~~~~~~~~~~Lv~am~~vk~aL~~~gl~-~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~i~ 189 (504)
|+|.++|++|+||||++.... .. .|+|+|+++|++|+++||+ +|||+|+++++++.++||||.|.|++++. ++|+
T Consensus 80 ~~~~~~i~~i~VGnEv~~~~~-~~--~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~-~~~~ 155 (310)
T PF00332_consen 80 YLPAVNIRYIAVGNEVLTGTD-NA--YLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIA-SVMD 155 (310)
T ss_dssp CTTTSEEEEEEEEES-TCCSG-GG--GHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHH-HHHH
T ss_pred cCcccceeeeecccccccCcc-ce--eeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccch-hhhh
Confidence 999999999999999998742 22 8999999999999999999 89999999999999999999999999987 7999
Q ss_pred HHHHHHhhcCCCceecCCCCCCC----CCCCccccccCCCCceecCCCCccccchHHHHHHHHHHHHHHcCCCCccEEEe
Q 037583 190 RILEFHRQTKSPFMVNPYPYFGF----KPQTLNYALFKPNAGVFDPATGKNYTNMFDAQLDAVYSAMKKVGYEDVDIVVG 265 (504)
Q Consensus 190 ~~l~fL~~~~d~~~vNiyPyf~~----~~i~~d~A~f~~~~~~~d~~~~~~Y~n~fda~~Dav~~a~~k~g~~~~~vvVs 265 (504)
++++||.++++|||+|+||||.+ .++++|||+|+++..+.|. +++|+||||+|+|++++||+|+|+++++|+|+
T Consensus 156 ~~l~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~D~--~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ 233 (310)
T PF00332_consen 156 PLLKFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVVDG--GLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVG 233 (310)
T ss_dssp HHHHHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SEET--TEEESSHHHHHHHHHHHHHHTTT-TT--EEEE
T ss_pred HHHHHhhccCCCceeccchhhhccCCcccCCccccccccccccccc--chhhhHHHHHHHHHHHHHHHHhCCCCceeEEe
Confidence 99999999999999999999988 6899999999998777765 88999999999999999999999999999999
Q ss_pred eeccCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCcceEEEEecccCCCCC-CCCCCceeeecCCCceeeee
Q 037583 266 ETGWPSAGDPNQPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNENLKP-SISEQNFGLFKPDFTPVYDV 344 (504)
Q Consensus 266 ETGWPS~G~~~~~~as~~Na~~y~~~lv~~~~s~~GTp~rpg~~~~~yiF~~FDE~wK~-~~~E~~wGlf~~d~~~ky~l 344 (504)
||||||+|+ .+++.+||+.|++++++++. .|||+||+..+++||||||||+||+ +.+|||||||++||++||+|
T Consensus 234 ETGWPs~G~---~~a~~~nA~~~~~nl~~~~~--~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~d~~~ky~~ 308 (310)
T PF00332_consen 234 ETGWPSAGD---PGATPENAQAYNQNLIKHVL--KGTPLRPGNGIDVYIFEAFDENWKPGPEVERHWGLFYPDGTPKYDL 308 (310)
T ss_dssp EE---SSSS---TTCSHHHHHHHHHHHHHHCC--GBBSSSBSS---EEES-SB--TTSSSSGGGGG--SB-TTSSBSS--
T ss_pred ccccccCCC---CCCCcchhHHHHHHHHHHHh--CCCcccCCCCCeEEEEEEecCcCCCCCcccceeeeECCCCCeecCC
Confidence 999999998 45899999999999999986 7999999999999999999999999 56999999999999999999
Q ss_pred ec
Q 037583 345 GI 346 (504)
Q Consensus 345 ~~ 346 (504)
+|
T Consensus 309 ~f 310 (310)
T PF00332_consen 309 DF 310 (310)
T ss_dssp --
T ss_pred CC
Confidence 87
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-43 Score=345.06 Aligned_cols=252 Identities=20% Similarity=0.298 Sum_probs=201.9
Q ss_pred CCCceeEEecCCCCC--CCCHHHHHHHHH--hcCCCCEEEEccCC----HHHHHHHhcCCCcEEEEeCCCCccccCChHH
Q 037583 28 AADSIGVNYGAIANN--LPPPQQVANFLK--TQTTIDRVKLFDAN----PEFLRAFAHTNIPVTVTVGNGDIPALAKLPA 99 (504)
Q Consensus 28 ~~~~~GVnYg~~~~n--lps~~~vv~ll~--k~~~i~~VRiY~~d----~~vL~A~a~tgi~V~lGV~n~~~~~~~~~~~ 99 (504)
+.+..+|+||++.++ +++.+++..+|. +..+ ..||+|++| .+|++|+...|++|+||||..+..+. +.
T Consensus 42 a~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t-~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~-~~-- 117 (305)
T COG5309 42 ASGFLAFTLGPYNDDGTCKSADQVASDLELLASYT-HSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIHD-AV-- 117 (305)
T ss_pred cccccceeccccCCCCCCcCHHHHHhHHHHhccCC-ceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchhh-hH--
Confidence 457789999999876 799999976552 4443 399999987 57899999999999999997543221 22
Q ss_pred HHHHHHhhccCCCCCCeEEEEEeccccccCCCcchHHHHHHHHHHHHHHHHHcCCCceeeeccccccccccCCCCCcccc
Q 037583 100 AQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSSVQVSTPHSLGILSTSEPPSTGRF 179 (504)
Q Consensus 100 A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~~~~~~~~Lv~am~~vk~aL~~~gl~~IkVsT~~~~~vl~~s~pPS~g~F 179 (504)
+.-+...+.+++.++.|++|.||||+|+|+ ..++++|+.+|.++|.+|+.+|++ +||+|+++|.+|.+.
T Consensus 118 -~~til~ay~~~~~~d~v~~v~VGnEal~r~-~~tasql~~~I~~vrsav~~agy~-gpV~T~dsw~~~~~n-------- 186 (305)
T COG5309 118 -EKTILSAYLPYNGWDDVTTVTVGNEALNRN-DLTASQLIEYIDDVRSAVKEAGYD-GPVTTVDSWNVVINN-------- 186 (305)
T ss_pred -HHHHHHHHhccCCCCceEEEEechhhhhcC-CCCHHHHHHHHHHHHHHHHhcCCC-CceeecccceeeeCC--------
Confidence 223456688888889999999999999996 589999999999999999999995 999999999988762
Q ss_pred cccchhHHHHHHHHHHhhcCCCceecCCCCCCCCCCCccccccCCCCceecCCCCccccchHHHHHHHHHHHHHHcCCCC
Q 037583 180 RKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQTLNYALFKPNAGVFDPATGKNYTNMFDAQLDAVYSAMKKVGYED 259 (504)
Q Consensus 180 ~~~~~~~~i~~~l~fL~~~~d~~~vNiyPyf~~~~i~~d~A~f~~~~~~~d~~~~~~Y~n~fda~~Dav~~a~~k~g~~~ 259 (504)
|.++ ++.|++|+|.||||+...+. +. -..++-.|+.-++.+ .| .+
T Consensus 187 ------p~l~-------~~SDfia~N~~aYwd~~~~a-------------~~-----~~~f~~~q~e~vqsa---~g-~~ 231 (305)
T COG5309 187 ------PELC-------QASDFIAANAHAYWDGQTVA-------------NA-----AGTFLLEQLERVQSA---CG-TK 231 (305)
T ss_pred ------hHHh-------hhhhhhhcccchhccccchh-------------hh-----hhHHHHHHHHHHHHh---cC-CC
Confidence 2333 46688999999999962111 10 012454556655544 23 34
Q ss_pred ccEEEeeeccCCCCCCCC-CCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCcceEEEEecccCCCCC-C--CCCCceeeec
Q 037583 260 VDIVVGETGWPSAGDPNQ-PESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNENLKP-S--ISEQNFGLFK 335 (504)
Q Consensus 260 ~~vvVsETGWPS~G~~~~-~~as~~Na~~y~~~lv~~~~s~~GTp~rpg~~~~~yiF~~FDE~wK~-~--~~E~~wGlf~ 335 (504)
|+++|+||||||+|..++ +.||++||..|.+++++.+++ .+.++|+||+|||+||. + ++|+|||+++
T Consensus 232 k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~---------~G~d~fvfeAFdd~WK~~~~y~VEkywGv~~ 302 (305)
T COG5309 232 KTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRS---------CGYDVFVFEAFDDDWKADGSYGVEKYWGVLS 302 (305)
T ss_pred ccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhc---------cCccEEEeeeccccccCccccchhhceeeec
Confidence 999999999999999987 899999999999999999976 47999999999999999 3 7999999998
Q ss_pred CCC
Q 037583 336 PDF 338 (504)
Q Consensus 336 ~d~ 338 (504)
.|+
T Consensus 303 s~~ 305 (305)
T COG5309 303 SDR 305 (305)
T ss_pred cCC
Confidence 775
No 3
>smart00768 X8 Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.
Probab=99.95 E-value=1.6e-28 Score=205.62 Aligned_cols=85 Identities=52% Similarity=1.087 Sum_probs=82.0
Q ss_pred eeEEecCCCChHHHHHHHHhccCCCCCCCccCCCCCcCCCCchhhhhhHHHHHHHHHcCCCCCCCCCCCceEEEecCCCC
Q 037583 381 KWCVPKSDASDAALQANIDYVCGTGVDCKPIQAGGPCFNPNNVRSHAAYAMNAFYQANGLHDYACDFNKTGVLTSADPSY 460 (504)
Q Consensus 381 ~wCV~~~~~~~~~l~~~ld~aCg~~~dC~~I~~~g~C~~p~t~~~~aSya~N~Yyq~~~~~~~~CdF~G~a~~~~~~ps~ 460 (504)
+|||+|+++++++||++|||||+++.||++|++||.||+|+++++|||||||+|||++++..++|||+|.|+++++|||+
T Consensus 1 ~wCv~~~~~~~~~l~~~~~yaCg~~~dC~~I~~~g~c~~~~~~~~~aS~a~N~YYq~~~~~~~aC~F~G~a~~~~~~ps~ 80 (85)
T smart00768 1 LWCVAKPDADEAALQAALDYACGQGADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFGGTATITTTDPST 80 (85)
T ss_pred CccccCCCCCHHHHHHHHHHHhcCCCCccccCCCCcccCCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCceEEEecCCCC
Confidence 49999999999999999999999944999999999999999999999999999999999999999999999999999999
Q ss_pred CCcee
Q 037583 461 EACDY 465 (504)
Q Consensus 461 ~~C~~ 465 (504)
++|.|
T Consensus 81 ~~C~~ 85 (85)
T smart00768 81 GSCKF 85 (85)
T ss_pred CccCC
Confidence 99976
No 4
>PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen [] as well as at the C terminus of family 17 glycosyl hydrolases []. This domain may be involved in carbohydrate binding.; PDB: 2JON_A 2W61_A 2W62_A 2W63_A.
Probab=99.83 E-value=3.6e-21 Score=158.49 Aligned_cols=68 Identities=49% Similarity=0.987 Sum_probs=57.4
Q ss_pred eeEEecCCCChHHHHHHHHhccCCCC-CCCccCCCCC---------cCCCCchhhhhhHHHHHHHHHcCCCCCCCCCCCc
Q 037583 381 KWCVPKSDASDAALQANIDYVCGTGV-DCKPIQAGGP---------CFNPNNVRSHAAYAMNAFYQANGLHDYACDFNKT 450 (504)
Q Consensus 381 ~wCV~~~~~~~~~l~~~ld~aCg~~~-dC~~I~~~g~---------C~~p~t~~~~aSya~N~Yyq~~~~~~~~CdF~G~ 450 (504)
+|||+++++++++|+++|||||+++. ||++|+++|. |+. ++|||||||+|||++++.+.+|||+|+
T Consensus 1 l~Cv~~~~~~~~~l~~~l~~aC~~~~~dC~~I~~~g~~G~YG~~S~C~~----~~~lSya~N~YY~~~~~~~~~C~F~G~ 76 (78)
T PF07983_consen 1 LWCVAKPDADDKELQDLLDYACGQGGVDCSPIQPNGTTGVYGAYSMCSP----RQHLSYAFNQYYQKQGRNSSACDFSGN 76 (78)
T ss_dssp -EEEE-TTS-HHHHHHHHHHHTTT-SSSCCCC-EETTTTEE-TTTTS-C----CHHHHHHHHHHHHHHTSSCCG-SS-ST
T ss_pred CcceeCCCCCHHHHHHHHHHHHcCCCCChhhhCCCCcccccccccCCCH----HHHHHHHHHHHHHHcCCCCCcCCCCCC
Confidence 59999999999999999999999943 9999999998 833 899999999999999999999999999
Q ss_pred eE
Q 037583 451 GV 452 (504)
Q Consensus 451 a~ 452 (504)
||
T Consensus 77 at 78 (78)
T PF07983_consen 77 AT 78 (78)
T ss_dssp EE
T ss_pred CC
Confidence 96
No 5
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.80 E-value=1.5e-19 Score=182.44 Aligned_cols=236 Identities=19% Similarity=0.307 Sum_probs=131.0
Q ss_pred eeEEecCCCC-------CCC-CH---HHHHHHHHhcCCCCEEEEccCCH-----HHHHHHhcCCCcEEEEeCCCCcccc-
Q 037583 32 IGVNYGAIAN-------NLP-PP---QQVANFLKTQTTIDRVKLFDANP-----EFLRAFAHTNIPVTVTVGNGDIPAL- 94 (504)
Q Consensus 32 ~GVnYg~~~~-------nlp-s~---~~vv~ll~k~~~i~~VRiY~~d~-----~vL~A~a~tgi~V~lGV~n~~~~~~- 94 (504)
.||.|-+-++ |.. .+ .+.+.+| |++|++.||+|+.|| ++|++|++.||.|+++|..+ ..++
T Consensus 30 kGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l-~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p-~~sI~ 107 (314)
T PF03198_consen 30 KGVAYQPGGSSEPSNYIDPLADPEACKRDIPLL-KELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTP-NGSIN 107 (314)
T ss_dssp EEEE----------SS--GGG-HHHHHHHHHHH-HHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BT-TBS--
T ss_pred eeEEcccCCCCCCccCcCcccCHHHHHHhHHHH-HHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCC-Ccccc
Confidence 6999988766 222 22 3346788 999999999999884 79999999999999999987 3445
Q ss_pred CChHHHHHHHHh-------hccCCCCCCeEEEEEeccccccCC-CcchHHHHHHHHHHHHHHHHHcCCCceeeecccccc
Q 037583 95 AKLPAAQSWVAN-------NILPHHPQTIFRYIVLGNEILATS-DKVLIASLLPAMRTLKSALDAANLSSVQVSTPHSLG 166 (504)
Q Consensus 95 ~~~~~A~~Wv~~-------~v~~y~p~~~I~~I~VGNEvl~~~-~~~~~~~Lv~am~~vk~aL~~~gl~~IkVsT~~~~~ 166 (504)
++ .-+..|-.. -|..+...+|+.++.+||||++.. +...++.+.+++|++|+.+++.++++|||+.+.+.+
T Consensus 108 r~-~P~~sw~~~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPVGYsaaD~ 186 (314)
T PF03198_consen 108 RS-DPAPSWNTDLLDRYFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPVGYSAADD 186 (314)
T ss_dssp TT-S------HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----EEEEE---
T ss_pred CC-CCcCCCCHHHHHHHHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEccCC
Confidence 22 122345222 233333458999999999999874 456789999999999999999999899999886542
Q ss_pred ccccCCCCCcccccccchhHHHHHHHHHHhhc-----CCCceecCCCCCCCCCCCccccccCCCCceecCCCCccccchH
Q 037583 167 ILSTSEPPSTGRFRKGYDRLIFARILEFHRQT-----KSPFMVNPYPYFGFKPQTLNYALFKPNAGVFDPATGKNYTNMF 241 (504)
Q Consensus 167 vl~~s~pPS~g~F~~~~~~~~i~~~l~fL~~~-----~d~~~vNiyPyf~~~~i~~d~A~f~~~~~~~d~~~~~~Y~n~f 241 (504)
. + ...++.+||.+. .|++++|.|-|... +.|+. +| |..+.
T Consensus 187 ~--------------~----~r~~~a~Yl~Cg~~~~~iDf~g~N~Y~WCg~-------Stf~~-SG---------y~~l~ 231 (314)
T PF03198_consen 187 A--------------E----IRQDLANYLNCGDDDERIDFFGLNSYEWCGD-------STFET-SG---------YDRLT 231 (314)
T ss_dssp T--------------T----THHHHHHHTTBTT-----S-EEEEE----SS---------HHH-HS---------HHHHH
T ss_pred h--------------h----HHHHHHHHhcCCCcccccceeeeccceecCC-------Ccccc-cc---------HHHHH
Confidence 1 1 224677898864 58999999999874 33321 22 32221
Q ss_pred HHHHHHHHHHHHHcCCCCccEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCcceEEEEecccCC
Q 037583 242 DAQLDAVYSAMKKVGYEDVDIVVGETGWPSAGDPNQPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNEN 321 (504)
Q Consensus 242 da~~Dav~~a~~k~g~~~~~vvVsETGWPS~G~~~~~~as~~Na~~y~~~lv~~~~s~~GTp~rpg~~~~~yiF~~FDE~ 321 (504)
... .++ .+||+++|.|+.+.. .|.|.+ +.++.+..+|..+.| ..+||.|.|
T Consensus 232 --------~~f--~~y-~vPvffSEyGCn~~~-----------pR~f~e--v~aly~~~Mt~v~SG----GivYEy~~e- 282 (314)
T PF03198_consen 232 --------KEF--SNY-SVPVFFSEYGCNTVT-----------PRTFTE--VPALYSPEMTDVWSG----GIVYEYFQE- 282 (314)
T ss_dssp --------HHH--TT--SS-EEEEEE---SSS-----------S---TH--HHHHTSHHHHTTEEE----EEES-SB---
T ss_pred --------HHh--hCC-CCCeEEcccCCCCCC-----------CccchH--hHHhhCccchhheec----eEEEEEecc-
Confidence 112 233 699999999998654 256665 666655445555444 578999999
Q ss_pred CCCCCCCCceeeecCCCce
Q 037583 322 LKPSISEQNFGLFKPDFTP 340 (504)
Q Consensus 322 wK~~~~E~~wGlf~~d~~~ 340 (504)
+++|||...++..
T Consensus 283 ------~n~yGlV~~~~~~ 295 (314)
T PF03198_consen 283 ------ANNYGLVEISGDG 295 (314)
T ss_dssp ------SSS--SEEE-TTS
T ss_pred ------CCceEEEEEcCCC
Confidence 8999999876543
No 6
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=98.97 E-value=1.3e-08 Score=105.43 Aligned_cols=243 Identities=14% Similarity=0.179 Sum_probs=119.5
Q ss_pred HHHHHHHHHhcCCCCEEEE--cc-------CC-H---HHHHHHhcCCCcEEEEeCCCC---------cccc-CC--hH--
Q 037583 46 PQQVANFLKTQTTIDRVKL--FD-------AN-P---EFLRAFAHTNIPVTVTVGNGD---------IPAL-AK--LP-- 98 (504)
Q Consensus 46 ~~~vv~ll~k~~~i~~VRi--Y~-------~d-~---~vL~A~a~tgi~V~lGV~n~~---------~~~~-~~--~~-- 98 (504)
..++.++| |..|++.||+ |- .| . ...+.+++.||+|+|..--.| ++.- .+ .+
T Consensus 26 ~~d~~~il-k~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l 104 (332)
T PF07745_consen 26 EKDLFQIL-KDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQL 104 (332)
T ss_dssp B--HHHHH-HHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHH
T ss_pred CCCHHHHH-HhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHH
Confidence 46789999 9999986655 41 12 2 344566789999999987643 1111 11 11
Q ss_pred --HHHHHHHhhccCCC-CCCeEEEEEeccccccC-----CCcchHHHHHHHHHHHHHHHHHcCCC-ceeeeccccccccc
Q 037583 99 --AAQSWVANNILPHH-PQTIFRYIVLGNEILAT-----SDKVLIASLLPAMRTLKSALDAANLS-SVQVSTPHSLGILS 169 (504)
Q Consensus 99 --~A~~Wv~~~v~~y~-p~~~I~~I~VGNEvl~~-----~~~~~~~~Lv~am~~vk~aL~~~gl~-~IkVsT~~~~~vl~ 169 (504)
+..++.++-+...- -+..+..|-||||.-.. +.....+.+...++.-.+++|+..-+ +|-|-.+...+.
T Consensus 105 ~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~~~-- 182 (332)
T PF07745_consen 105 AKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPNIKVMLHLANGGDN-- 182 (332)
T ss_dssp HHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES-TTSH--
T ss_pred HHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCCch--
Confidence 11122221111110 24678999999997543 12234566777777777777765543 333332222110
Q ss_pred cCCCCCcccccccchhHHHHHHHHHHhhc---CCCceecCCCCCCCCCCCccccccCCCCceecCCCCccccchHHHHHH
Q 037583 170 TSEPPSTGRFRKGYDRLIFARILEFHRQT---KSPFMVNPYPYFGFKPQTLNYALFKPNAGVFDPATGKNYTNMFDAQLD 246 (504)
Q Consensus 170 ~s~pPS~g~F~~~~~~~~i~~~l~fL~~~---~d~~~vNiyPyf~~~~i~~d~A~f~~~~~~~d~~~~~~Y~n~fda~~D 246 (504)
..++-..+.|... -|+++++.||||.. ++ +.+..+++
T Consensus 183 ----------------~~~~~~f~~l~~~g~d~DviGlSyYP~w~~---~l---------------------~~l~~~l~ 222 (332)
T PF07745_consen 183 ----------------DLYRWFFDNLKAAGVDFDVIGLSYYPFWHG---TL---------------------EDLKNNLN 222 (332)
T ss_dssp ----------------HHHHHHHHHHHHTTGG-SEEEEEE-STTST----H---------------------HHHHHHHH
T ss_pred ----------------HHHHHHHHHHHhcCCCcceEEEecCCCCcc---hH---------------------HHHHHHHH
Confidence 1122233333332 39999999999984 11 12233333
Q ss_pred HHHHHHHHcCCCCccEEEeeeccCCCCCC-----CC---------CCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCcceE
Q 037583 247 AVYSAMKKVGYEDVDIVVGETGWPSAGDP-----NQ---------PESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEV 312 (504)
Q Consensus 247 av~~a~~k~g~~~~~vvVsETGWPS~G~~-----~~---------~~as~~Na~~y~~~lv~~~~s~~GTp~rpg~~~~~ 312 (504)
.+ .++. +|+|+|.|||||..-.. +. -.+|++.|+.|++++++.+.+-.+ +.+..+
T Consensus 223 ~l---~~ry---~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~-----~~g~Gv 291 (332)
T PF07745_consen 223 DL---ASRY---GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPN-----GGGLGV 291 (332)
T ss_dssp HH---HHHH---T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS-------TTEEEE
T ss_pred HH---HHHh---CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhcc-----CCeEEE
Confidence 32 2343 68999999999998211 11 125899999999999999875211 134556
Q ss_pred EEEe-cccCCCC-----CC-CCCCceeeecCCCceeee
Q 037583 313 YIFA-LFNENLK-----PS-ISEQNFGLFKPDFTPVYD 343 (504)
Q Consensus 313 yiF~-~FDE~wK-----~~-~~E~~wGlf~~d~~~ky~ 343 (504)
|+-| ..-..++ .+ ..|.. +||+.+|++--.
T Consensus 292 fYWeP~w~~~~~~~~~~~g~~w~n~-~lFD~~g~~l~s 328 (332)
T PF07745_consen 292 FYWEPAWIPVENGWDWGGGSSWDNQ-ALFDFNGNALPS 328 (332)
T ss_dssp EEE-TT-GGGTTHHHHTTTSSSSBG-SSB-TTSBB-GG
T ss_pred EeeccccccCCcccccCCCCCcccc-ccCCCCCCCchH
Confidence 6544 2222221 11 23333 788888876433
No 7
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.32 E-value=1e-05 Score=81.61 Aligned_cols=205 Identities=17% Similarity=0.248 Sum_probs=110.0
Q ss_pred HHHHHHHHHhcCCCCEEEE--c----cCC--------H------HHHHHHhcCCCcEEEEeCCCCcccc-CChHHHHHHH
Q 037583 46 PQQVANFLKTQTTIDRVKL--F----DAN--------P------EFLRAFAHTNIPVTVTVGNGDIPAL-AKLPAAQSWV 104 (504)
Q Consensus 46 ~~~vv~ll~k~~~i~~VRi--Y----~~d--------~------~vL~A~a~tgi~V~lGV~n~~~~~~-~~~~~A~~Wv 104 (504)
+++..+.| |..|++.||+ | |.| . ++-+.+.+.||||++..--.|-=+- ..+..-.+|.
T Consensus 65 ~qD~~~iL-K~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~ 143 (403)
T COG3867 65 RQDALQIL-KNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKAWE 143 (403)
T ss_pred HHHHHHHH-HHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcHHhh
Confidence 56778899 9999986655 4 333 1 3445556899999998765431111 1111112342
Q ss_pred -------HhhccCCC---------CCCeEEEEEeccccccC-----CCcchHHHHHHHHHHHHHHHHHcCCCceeeeccc
Q 037583 105 -------ANNILPHH---------PQTIFRYIVLGNEILAT-----SDKVLIASLLPAMRTLKSALDAANLSSVQVSTPH 163 (504)
Q Consensus 105 -------~~~v~~y~---------p~~~I~~I~VGNEvl~~-----~~~~~~~~Lv~am~~vk~aL~~~gl~~IkVsT~~ 163 (504)
++.|-.|. .+..+..|-||||.-.. ++......+...++.--+++|...- .|||---.
T Consensus 144 ~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~p-~ikv~lHl 222 (403)
T COG3867 144 NLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVSP-TIKVALHL 222 (403)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcCC-CceEEEEe
Confidence 22221111 13567889999998532 1121234444444444445544222 45553221
Q ss_pred cccccccCCCCCcccccccchhHHHHHHHHHHhhc---CCCceecCCCCCCCCCCCccccccCCCCceecCCCCccccch
Q 037583 164 SLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQT---KSPFMVNPYPYFGFKPQTLNYALFKPNAGVFDPATGKNYTNM 240 (504)
Q Consensus 164 ~~~vl~~s~pPS~g~F~~~~~~~~i~~~l~fL~~~---~d~~~vNiyPyf~~~~i~~d~A~f~~~~~~~d~~~~~~Y~n~ 240 (504)
.+ |--.+.|| -+.|-|.+. -|.|++-.||||.. +++ -
T Consensus 223 -----a~--g~~n~~y~---------~~fd~ltk~nvdfDVig~SyYpyWhg---tl~---------------------n 262 (403)
T COG3867 223 -----AE--GENNSLYR---------WIFDELTKRNVDFDVIGSSYYPYWHG---TLN---------------------N 262 (403)
T ss_pred -----cC--CCCCchhh---------HHHHHHHHcCCCceEEeeeccccccC---cHH---------------------H
Confidence 11 11123343 122222222 27889999999996 111 0
Q ss_pred HHHHHHHHHHHHHHcCCCCccEEEeeecc--------------CCCCCCCCCCCCHHHHHHHHHHHHHHHhc
Q 037583 241 FDAQLDAVYSAMKKVGYEDVDIVVGETGW--------------PSAGDPNQPESNLANALSYNGNLVKHVNS 298 (504)
Q Consensus 241 fda~~Dav~~a~~k~g~~~~~vvVsETGW--------------PS~G~~~~~~as~~Na~~y~~~lv~~~~s 298 (504)
+...++.+- .+ .+|.|+|.||+. |+.+...+--.+++-|++|.++++..+..
T Consensus 263 L~~nl~dia---~r---Y~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~n 328 (403)
T COG3867 263 LTTNLNDIA---SR---YHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKN 328 (403)
T ss_pred HHhHHHHHH---HH---hcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHh
Confidence 111122211 11 378999999998 55443222346778899999999999864
No 8
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.02 E-value=0.00032 Score=69.63 Aligned_cols=122 Identities=16% Similarity=0.015 Sum_probs=79.2
Q ss_pred ceeEEecCCCCCCCCHHHHHHHHHhcCCCCEEEEccC-------------C-------HHHHHHHhcCCCcEEEEeCCC-
Q 037583 31 SIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDA-------------N-------PEFLRAFAHTNIPVTVTVGNG- 89 (504)
Q Consensus 31 ~~GVnYg~~~~nlps~~~vv~ll~k~~~i~~VRiY~~-------------d-------~~vL~A~a~tgi~V~lGV~n~- 89 (504)
..|+|-. ..++. ..++.++.+ ++.|++.|||.-. + ..+|+++++.||+|+|.+...
T Consensus 10 ~~G~n~~-w~~~~-~~~~~~~~~-~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~ 86 (281)
T PF00150_consen 10 WRGFNTH-WYNPS-ITEADFDQL-KALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAP 86 (281)
T ss_dssp EEEEEET-TSGGG-SHHHHHHHH-HHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEEST
T ss_pred eeeeecc-cCCCC-CHHHHHHHH-HHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 3466655 22222 678889999 9999999999721 1 157888899999999999874
Q ss_pred C---cccc-CChHHHHHHHHh----hccCCCCCCeEEEEEeccccccCCCc-----chHHHHHHHHHHHHHHHHHcCCC
Q 037583 90 D---IPAL-AKLPAAQSWVAN----NILPHHPQTIFRYIVLGNEILATSDK-----VLIASLLPAMRTLKSALDAANLS 155 (504)
Q Consensus 90 ~---~~~~-~~~~~A~~Wv~~----~v~~y~p~~~I~~I~VGNEvl~~~~~-----~~~~~Lv~am~~vk~aL~~~gl~ 155 (504)
. .... .......+|.++ ....|.....|.++=+.||+...... .....+.+.++.+.+++|+.+-+
T Consensus 87 ~w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~ 165 (281)
T PF00150_consen 87 GWANGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPN 165 (281)
T ss_dssp TCSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSS
T ss_pred cccccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCc
Confidence 1 1111 222333334322 22333233568899999999876321 13467888999999999998875
No 9
>PRK10150 beta-D-glucuronidase; Provisional
Probab=97.96 E-value=0.0013 Score=73.77 Aligned_cols=256 Identities=11% Similarity=0.048 Sum_probs=140.3
Q ss_pred eeEEecCCCC---CCCCHHH---HHHHHHhcCCCCEEEEcc--CCHHHHHHHhcCCCcEEEEeCCCC-------------
Q 037583 32 IGVNYGAIAN---NLPPPQQ---VANFLKTQTTIDRVKLFD--ANPEFLRAFAHTNIPVTVTVGNGD------------- 90 (504)
Q Consensus 32 ~GVnYg~~~~---nlps~~~---vv~ll~k~~~i~~VRiY~--~d~~vL~A~a~tgi~V~lGV~n~~------------- 90 (504)
.|+|+-.... ..++.+. .+++| |.+|++.||+-. .++..+.++.+.||-|+.-++...
T Consensus 295 rG~~~h~~~~~~G~a~~~~~~~~d~~l~-K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~ 373 (604)
T PRK10150 295 KGFGKHEDADIRGKGLDEVLNVHDHNLM-KWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGN 373 (604)
T ss_pred EeeeccCCCCccCCcCCHHHHHHHHHHH-HHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccccccccccccccccc
Confidence 4787743221 1234444 35677 999999999943 357899999999999986553210
Q ss_pred --ccccC----C---hHHHHHHHHhhccCCCCCCeEEEEEeccccccCCCcchHHHHHHHHHHHHHHHHHcCCCceeeec
Q 037583 91 --IPALA----K---LPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSSVQVST 161 (504)
Q Consensus 91 --~~~~~----~---~~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~~~~~~~~Lv~am~~vk~aL~~~gl~~IkVsT 161 (504)
..... + .+...+-+++.|.++...--|..-.+|||.-... ......++.+.+.+++..- .=+|+.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~~-----~~~~~~~~~l~~~~k~~Dp-tR~vt~ 447 (604)
T PRK10150 374 KPKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPASRE-----QGAREYFAPLAELTRKLDP-TRPVTC 447 (604)
T ss_pred cccccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCccc-----hhHHHHHHHHHHHHHhhCC-CCceEE
Confidence 00111 0 1122233555666654445688999999974321 1222344445555554332 234555
Q ss_pred cccccccccCCCCCcccccccchhHHHHHHHHHHhhcCCCceecCCCCCCCCCCCccccccCCCCceecCCCCccccchH
Q 037583 162 PHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQTLNYALFKPNAGVFDPATGKNYTNMF 241 (504)
Q Consensus 162 ~~~~~vl~~s~pPS~g~F~~~~~~~~i~~~l~fL~~~~d~~~vNiyPyf~~~~i~~d~A~f~~~~~~~d~~~~~~Y~n~f 241 (504)
+..+. . +|.. .. +....|+++.|.|+=|-...-.+ . .....+
T Consensus 448 ~~~~~---~--~~~~----~~------------~~~~~Dv~~~N~Y~~wy~~~~~~--~---------------~~~~~~ 489 (604)
T PRK10150 448 VNVMF---A--TPDT----DT------------VSDLVDVLCLNRYYGWYVDSGDL--E---------------TAEKVL 489 (604)
T ss_pred Eeccc---C--Cccc----cc------------ccCcccEEEEcccceecCCCCCH--H---------------HHHHHH
Confidence 53211 0 0100 01 12245788899875332100000 0 001122
Q ss_pred HHHHHHHHHHHHHcCCCCccEEEeeeccCCCCCCC--C-CCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCcceEEEEecc
Q 037583 242 DAQLDAVYSAMKKVGYEDVDIVVGETGWPSAGDPN--Q-PESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALF 318 (504)
Q Consensus 242 da~~Dav~~a~~k~g~~~~~vvVsETGWPS~G~~~--~-~~as~~Na~~y~~~lv~~~~s~~GTp~rpg~~~~~yiF~~F 318 (504)
+..++.. .+ .+ ++|++++|+|+.+.-+.. + ..-+.+.|..|++...+.+.+ +|. -+..|+..+|
T Consensus 490 ~~~~~~~----~~-~~-~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~------~p~-~~G~~iW~~~ 556 (604)
T PRK10150 490 EKELLAW----QE-KL-HKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDR------VPA-VVGEQVWNFA 556 (604)
T ss_pred HHHHHHH----HH-hc-CCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhc------CCc-eEEEEEEeee
Confidence 2222211 11 12 899999999976532111 1 124688888888877776653 233 4668999999
Q ss_pred cCCCCC---CCCCCceeeecCCCceeeeee
Q 037583 319 NENLKP---SISEQNFGLFKPDFTPVYDVG 345 (504)
Q Consensus 319 DE~wK~---~~~E~~wGlf~~d~~~ky~l~ 345 (504)
|-.... +.-..+.||++.||++|-..-
T Consensus 557 D~~~~~g~~~~~g~~~Gl~~~dr~~k~~~~ 586 (604)
T PRK10150 557 DFATSQGILRVGGNKKGIFTRDRQPKSAAF 586 (604)
T ss_pred ccCCCCCCcccCCCcceeEcCCCCChHHHH
Confidence 955443 112357899999999988653
No 10
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.42 E-value=0.011 Score=59.23 Aligned_cols=79 Identities=13% Similarity=0.135 Sum_probs=54.3
Q ss_pred HHHHHHcCCCCccEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCcceEEEEecccC-CCCCCCC
Q 037583 249 YSAMKKVGYEDVDIVVGETGWPSAGDPNQPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNE-NLKPSIS 327 (504)
Q Consensus 249 ~~a~~k~g~~~~~vvVsETGWPS~G~~~~~~as~~Na~~y~~~lv~~~~s~~GTp~rpg~~~~~yiF~~FDE-~wK~~~~ 327 (504)
...|++++--++||+|||.+-|..+ +.+.|+.+++++++.+.+. | . ...+++..+.|. .|.+
T Consensus 172 ~~~l~~~~~~g~pi~iTE~dv~~~~-------~~~~qA~~~~~~l~~~~~~---p---~-v~gi~~Wg~~d~~~W~~--- 234 (254)
T smart00633 172 RAALDRFASLGLEIQITELDISGYP-------NPQAQAADYEEVFKACLAH---P---A-VTGVTVWGVTDKYSWLD--- 234 (254)
T ss_pred HHHHHHHHHcCCceEEEEeecCCCC-------cHHHHHHHHHHHHHHHHcC---C---C-eeEEEEeCCccCCcccC---
Confidence 3344444434799999999988642 3478899999999998753 2 1 234566676664 3543
Q ss_pred CCceeeecCCCceeeee
Q 037583 328 EQNFGLFKPDFTPVYDV 344 (504)
Q Consensus 328 E~~wGlf~~d~~~ky~l 344 (504)
+.+-|||+.|+++|-.+
T Consensus 235 ~~~~~L~d~~~~~kpa~ 251 (254)
T smart00633 235 GGAPLLFDANYQPKPAY 251 (254)
T ss_pred CCCceeECCCCCCChhh
Confidence 25679999999888643
No 11
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=97.01 E-value=0.042 Score=54.66 Aligned_cols=165 Identities=15% Similarity=0.095 Sum_probs=92.1
Q ss_pred CeEEEEEeccccccCC-CcchHHHHHHHHHHHHHHHHHcCCCceeeeccccccccccCCCCCcccccccchhHHHHHHHH
Q 037583 115 TIFRYIVLGNEILATS-DKVLIASLLPAMRTLKSALDAANLSSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILE 193 (504)
Q Consensus 115 ~~I~~I~VGNEvl~~~-~~~~~~~Lv~am~~vk~aL~~~gl~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~i~~~l~ 193 (504)
..++.|..=||+=... ...++++.+...++..+.|+.. .++++.+.....-. . +|+.. .-|.+.++
T Consensus 64 ~~~~~ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~~---~~~l~sPa~~~~~~-~-~~~g~--------~Wl~~F~~ 130 (239)
T PF11790_consen 64 PGSKHLLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRSP---GVKLGSPAVAFTNG-G-TPGGL--------DWLSQFLS 130 (239)
T ss_pred cCccceeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhcC---CcEEECCeecccCC-C-CCCcc--------HHHHHHHH
Confidence 4689999999985443 2356777777777766666643 46777664311000 0 01111 23333333
Q ss_pred HHh--hcCCCceecCCCCCCCCCCCccccccCCCCceecCCCCccccchHHHHHHHHHHHHHHcCCCCccEEEeeeccCC
Q 037583 194 FHR--QTKSPFMVNPYPYFGFKPQTLNYALFKPNAGVFDPATGKNYTNMFDAQLDAVYSAMKKVGYEDVDIVVGETGWPS 271 (504)
Q Consensus 194 fL~--~~~d~~~vNiyPyf~~~~i~~d~A~f~~~~~~~d~~~~~~Y~n~fda~~Dav~~a~~k~g~~~~~vvVsETGWPS 271 (504)
-.. +..|++.||.| .. + . .-|...++.+ .++. ++||+|||.|+..
T Consensus 131 ~~~~~~~~D~iavH~Y---~~-~--~---------------------~~~~~~i~~~---~~~~---~kPIWITEf~~~~ 177 (239)
T PF11790_consen 131 ACARGCRVDFIAVHWY---GG-D--A---------------------DDFKDYIDDL---HNRY---GKPIWITEFGCWN 177 (239)
T ss_pred hcccCCCccEEEEecC---Cc-C--H---------------------HHHHHHHHHH---HHHh---CCCEEEEeecccC
Confidence 322 34566666665 21 0 0 0122333333 3443 3999999999876
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCcceEEEEecccCCCCCCCCCCceeeecCCCc
Q 037583 272 AGDPNQPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNENLKPSISEQNFGLFKPDFT 339 (504)
Q Consensus 272 ~G~~~~~~as~~Na~~y~~~lv~~~~s~~GTp~rpg~~~~~yiF~~FDE~wK~~~~E~~wGlf~~d~~ 339 (504)
.+ ...+.+.++.|.+..+..+.+. +. --.++||...+. +. ....+-.|++.+|+
T Consensus 178 ~~----~~~~~~~~~~fl~~~~~~ld~~------~~-VeryawF~~~~~-~~--~~~~~~~L~~~~G~ 231 (239)
T PF11790_consen 178 GG----SQGSDEQQASFLRQALPWLDSQ------PY-VERYAWFGFMND-GS--GVNPNSALLDADGS 231 (239)
T ss_pred CC----CCCCHHHHHHHHHHHHHHHhcC------CC-eeEEEecccccc-cC--CCccccccccCCCC
Confidence 22 2377899999999999998653 22 245677772222 22 33555566776764
No 12
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=96.24 E-value=0.23 Score=50.63 Aligned_cols=95 Identities=14% Similarity=0.100 Sum_probs=55.5
Q ss_pred ceeEEecCCCCC---CCCHHHH---HHHHHhcCCCCEEEEccC--CHHHHHHHhcCCCcEEEEeCCCCccc---------
Q 037583 31 SIGVNYGAIANN---LPPPQQV---ANFLKTQTTIDRVKLFDA--NPEFLRAFAHTNIPVTVTVGNGDIPA--------- 93 (504)
Q Consensus 31 ~~GVnYg~~~~n---lps~~~v---v~ll~k~~~i~~VRiY~~--d~~vL~A~a~tgi~V~lGV~n~~~~~--------- 93 (504)
..|||+...... .++.+++ ++++ |++|++.||+..- ++..+.++.+.||-|+..++......
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~-k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~ 95 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELM-KEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNY 95 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHH-HHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSC
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHH-HhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCcccc
Confidence 469998864332 2455554 4567 8999999999643 57999999999999998887621100
Q ss_pred c-CCh---HHHHHHHHhhccCCCCCCeEEEEEecccc
Q 037583 94 L-AKL---PAAQSWVANNILPHHPQTIFRYIVLGNEI 126 (504)
Q Consensus 94 ~-~~~---~~A~~Wv~~~v~~y~p~~~I~~I~VGNEv 126 (504)
. .++ +.+.+.+++.|.++.-.-.|..=.+|||.
T Consensus 96 ~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 96 DADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred CCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 0 122 22334455555554323358888999999
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=95.54 E-value=1 Score=48.71 Aligned_cols=78 Identities=14% Similarity=0.120 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCCCCEEEEc-------c-----CC-------HHHHHHHhcCCCcEEEEeCCCCccc-------cCChHHH
Q 037583 47 QQVANFLKTQTTIDRVKLF-------D-----AN-------PEFLRAFAHTNIPVTVTVGNGDIPA-------LAKLPAA 100 (504)
Q Consensus 47 ~~vv~ll~k~~~i~~VRiY-------~-----~d-------~~vL~A~a~tgi~V~lGV~n~~~~~-------~~~~~~A 100 (504)
++.+++| +++|++.+|+= - .| .+++..+.+.||+++|.+.--+++. ..+++..
T Consensus 57 ~eDi~l~-~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~gGw~~~~~~ 135 (427)
T TIGR03356 57 EEDVALM-KELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDRGGWLNRDTA 135 (427)
T ss_pred HHHHHHH-HHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhcCCCCChHHH
Confidence 5678899 99999988862 1 12 2688999999999999995433332 2222222
Q ss_pred ---HHHHHhhccCCCCCCeEEEEEeccccc
Q 037583 101 ---QSWVANNILPHHPQTIFRYIVLGNEIL 127 (504)
Q Consensus 101 ---~~Wv~~~v~~y~p~~~I~~I~VGNEvl 127 (504)
.+..+..+..| + +.|+....=||..
T Consensus 136 ~~f~~ya~~~~~~~-~-d~v~~w~t~NEp~ 163 (427)
T TIGR03356 136 EWFAEYAAVVAERL-G-DRVKHWITLNEPW 163 (427)
T ss_pred HHHHHHHHHHHHHh-C-CcCCEEEEecCcc
Confidence 22222333333 3 3677777778864
No 14
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=92.36 E-value=4.5 Score=48.60 Aligned_cols=96 Identities=17% Similarity=0.149 Sum_probs=58.9
Q ss_pred ceeEEecCCCC---CCCCHHHH---HHHHHhcCCCCEEEEccC--CHHHHHHHhcCCCcEEEEeCCCC--------cccc
Q 037583 31 SIGVNYGAIAN---NLPPPQQV---ANFLKTQTTIDRVKLFDA--NPEFLRAFAHTNIPVTVTVGNGD--------IPAL 94 (504)
Q Consensus 31 ~~GVnYg~~~~---nlps~~~v---v~ll~k~~~i~~VRiY~~--d~~vL~A~a~tgi~V~lGV~n~~--------~~~~ 94 (504)
..|+|+-.... ...+++++ ++++ |++|++.||+-.- ++..+.++.+.||.|+--+..+. ...+
T Consensus 336 lrGvnrh~~~p~~G~a~~~e~~~~dl~lm-K~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~ 414 (1021)
T PRK10340 336 LHGVNRHDNDHRKGRAVGMDRVEKDIQLM-KQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRI 414 (1021)
T ss_pred EEEeecCCCCcccCccCCHHHHHHHHHHH-HHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCcccccccccc
Confidence 35888654321 12345544 5567 8999999999642 46889999999999988653211 0111
Q ss_pred -CCh---HHHHHHHHhhccCCCCCCeEEEEEeccccc
Q 037583 95 -AKL---PAAQSWVANNILPHHPQTIFRYIVLGNEIL 127 (504)
Q Consensus 95 -~~~---~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl 127 (504)
.++ ++..+-+++.|.++.-.--|..-++|||.-
T Consensus 415 ~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~ 451 (1021)
T PRK10340 415 TDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESG 451 (1021)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 222 122233555665554334688889999974
No 15
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=83.09 E-value=2.6 Score=44.48 Aligned_cols=82 Identities=12% Similarity=0.042 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcCCCCEEEEccCC----------------HHHHHHHhcCCCcEEEEeCCCCccc----------------
Q 037583 46 PQQVANFLKTQTTIDRVKLFDAN----------------PEFLRAFAHTNIPVTVTVGNGDIPA---------------- 93 (504)
Q Consensus 46 ~~~vv~ll~k~~~i~~VRiY~~d----------------~~vL~A~a~tgi~V~lGV~n~~~~~---------------- 93 (504)
-++.++++ |..|++.|||-... ..+|..+++.||+|+|+++....+.
T Consensus 12 ~~~d~~~m-~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g 90 (374)
T PF02449_consen 12 WEEDLRLM-KEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADG 90 (374)
T ss_dssp HHHHHHHH-HHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTT
T ss_pred HHHHHHHH-HHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCC
Confidence 35667788 88999999984321 2678889999999999997532110
Q ss_pred ----------c--CC---hHHHHHHHHhhccCCCCCCeEEEEEecccccc
Q 037583 94 ----------L--AK---LPAAQSWVANNILPHHPQTIFRYIVLGNEILA 128 (504)
Q Consensus 94 ----------~--~~---~~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~ 128 (504)
. .+ .+.+.+.+++.+..|...-.|.++.|+||.-.
T Consensus 91 ~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 91 RRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp SBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred CcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 0 00 12345555555555654567999999999755
No 16
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=76.44 E-value=12 Score=39.51 Aligned_cols=96 Identities=10% Similarity=0.154 Sum_probs=59.1
Q ss_pred CCCEEEEccC-CHHHHHHHhcCCCcEEEEeCCCCccccCChHHHHHHHHhhccCCCCCCeEEEEEeccccccCCCcchHH
Q 037583 58 TIDRVKLFDA-NPEFLRAFAHTNIPVTVTVGNGDIPALAKLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIA 136 (504)
Q Consensus 58 ~i~~VRiY~~-d~~vL~A~a~tgi~V~lGV~n~~~~~~~~~~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~~~~~~~ 136 (504)
.+++|-+|+. |++++..+...|++|++..-.. ...+.++..-..++++.| .+.......+|-+==|-....+.....
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~l~~~~~R~~fi~siv-~~~~~~gfDGIdIDwE~p~~~~~~d~~ 132 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQISNPTYRTQWIQQKV-ELAKSQFMDGINIDIEQPITKGSPEYY 132 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHHcCCHHHHHHHHHHHH-HHHHHhCCCeEEEcccCCCCCCcchHH
Confidence 4788888864 7899999999999999864322 222355544444544432 222122355666544533221123356
Q ss_pred HHHHHHHHHHHHHHHcCCC
Q 037583 137 SLLPAMRTLKSALDAANLS 155 (504)
Q Consensus 137 ~Lv~am~~vk~aL~~~gl~ 155 (504)
.+..-|+++|++|++.+.+
T Consensus 133 ~~t~llkelr~~l~~~~~~ 151 (358)
T cd02875 133 ALTELVKETTKAFKKENPG 151 (358)
T ss_pred HHHHHHHHHHHHHhhcCCC
Confidence 7889999999999987643
No 17
>PRK09936 hypothetical protein; Provisional
Probab=75.13 E-value=15 Score=37.78 Aligned_cols=58 Identities=16% Similarity=0.198 Sum_probs=41.1
Q ss_pred eeEEecCCCCCC-CCHHHHHHHHH--hcCCCCEEEE-c----cCC--------HHHHHHHhcCCCcEEEEeCCC
Q 037583 32 IGVNYGAIANNL-PPPQQVANFLK--TQTTIDRVKL-F----DAN--------PEFLRAFAHTNIPVTVTVGNG 89 (504)
Q Consensus 32 ~GVnYg~~~~nl-ps~~~vv~ll~--k~~~i~~VRi-Y----~~d--------~~vL~A~a~tgi~V~lGV~n~ 89 (504)
-|+=|-|...|. -++++--++++ +..|++++=+ | +.| ...|+++.+.||+|.||++-|
T Consensus 22 ~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~D 95 (296)
T PRK09936 22 KGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYAD 95 (296)
T ss_pred ccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCC
Confidence 467799998773 56666555441 6788876544 2 223 367888899999999999976
No 18
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=73.02 E-value=11 Score=39.47 Aligned_cols=174 Identities=16% Similarity=0.146 Sum_probs=69.8
Q ss_pred HHHHHHhcCCCcEEEEeCCCCccc-cCChHHHHHHHHhhccCCC-----CCCeEEEEEeccccccCC--CcchHHHHHHH
Q 037583 70 EFLRAFAHTNIPVTVTVGNGDIPA-LAKLPAAQSWVANNILPHH-----PQTIFRYIVLGNEILATS--DKVLIASLLPA 141 (504)
Q Consensus 70 ~vL~A~a~tgi~V~lGV~n~~~~~-~~~~~~A~~Wv~~~v~~y~-----p~~~I~~I~VGNEvl~~~--~~~~~~~Lv~a 141 (504)
++-+-++.+|.+|+.|+-.-.-.. +.+....-.|--+|...++ ..-+|.+-=.|||.-..+ ....+.++..-
T Consensus 113 ~l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD 192 (319)
T PF03662_consen 113 ELNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAKD 192 (319)
T ss_dssp HHHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHHHH
T ss_pred HHHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHHHH
Confidence 344555689999999986321111 1111334578777765543 123678888999975432 13456777777
Q ss_pred HHHHHHHHHHcCCC----ceeeeccccccccccCCCCCcccccccchhHHHHHHHHHHhh-cCCCceecCCCCCCCCCCC
Q 037583 142 MRTLKSALDAANLS----SVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQ-TKSPFMVNPYPYFGFKPQT 216 (504)
Q Consensus 142 m~~vk~aL~~~gl~----~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~i~~~l~fL~~-~~d~~~vNiyPyf~~~~i~ 216 (504)
...+|+.|+.. +. +-+|.-+.. .|..+ .+++.|+-... ..|.+.-|.|+.=...+-.
T Consensus 193 ~~~Lr~il~~i-y~~~~~~P~v~gP~~-------------~~d~~----w~~~FL~~~g~~~vD~vT~H~Y~lg~g~d~~ 254 (319)
T PF03662_consen 193 FIQLRKILNEI-YKNALPGPLVVGPGG-------------FFDAD----WLKEFLKASGPGVVDAVTWHHYNLGSGRDPA 254 (319)
T ss_dssp H---HHHHHHH-HHH-TT---EEEEEE-------------SS-GG----GHHHHHHHTTTT--SEEEEEEEEE--TT-TT
T ss_pred HHHHHHHHHHH-HhcCCCCCeEECCCC-------------CCCHH----HHHHHHHhcCCCccCEEEEEecCCCCCchHH
Confidence 77778777652 11 112333321 12222 34444444444 3688888998642221111
Q ss_pred ccccccCCCCceecCCCCccccchHHHHH---HHHHHHHHHcCCCCccEEEeeeccCCCCCCC
Q 037583 217 LNYALFKPNAGVFDPATGKNYTNMFDAQL---DAVYSAMKKVGYEDVDIVVGETGWPSAGDPN 276 (504)
Q Consensus 217 ~d~A~f~~~~~~~d~~~~~~Y~n~fda~~---Dav~~a~~k~g~~~~~vvVsETGWPS~G~~~ 276 (504)
+-. .+.++ .+||... ..+...+++.+ ++++++++|||=-..|+..
T Consensus 255 l~~-------~~l~p-------~~Ld~~~~~~~~~~~~v~~~~-p~~~~WlGEtg~Ay~gG~~ 302 (319)
T PF03662_consen 255 LIE-------DFLNP-------SYLDTLADTFQKLQQVVQEYG-PGKPVWLGETGSAYNGGAP 302 (319)
T ss_dssp -HH-------HHTS---------HHHHHHHHHHHHH-----HH-H---EEEEEEEEESTT--T
T ss_pred HHH-------HhcCh-------hhhhHHHHHHHHHhhhhcccC-CCCCeEEeCcccccCCCCC
Confidence 100 01122 2344333 33333333332 6799999999955545443
No 19
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=70.07 E-value=3.2 Score=45.22 Aligned_cols=115 Identities=14% Similarity=0.163 Sum_probs=64.2
Q ss_pred HHHHHHHHHhcCCCCEEEEc--------c-----CC-------HHHHHHHhcCCCcEEEEeCCCCcccc-------CChH
Q 037583 46 PQQVANFLKTQTTIDRVKLF--------D-----AN-------PEFLRAFAHTNIPVTVTVGNGDIPAL-------AKLP 98 (504)
Q Consensus 46 ~~~vv~ll~k~~~i~~VRiY--------~-----~d-------~~vL~A~a~tgi~V~lGV~n~~~~~~-------~~~~ 98 (504)
-++.+++| |++|++..|.= + .| .+++..|.+.||+.+|.+.--+++.. .+++
T Consensus 60 y~eDi~l~-~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~~ 138 (455)
T PF00232_consen 60 YKEDIALM-KELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNRE 138 (455)
T ss_dssp HHHHHHHH-HHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGSTH
T ss_pred hhHHHHHH-HhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCHH
Confidence 36788899 99999988864 1 12 26889999999999999986555432 2222
Q ss_pred HHHHHHHh----hccCCCCCCeEEEEEeccccccCC-----------Ccc-------hHHHHHHHHHHHHHHHHHcCCCc
Q 037583 99 AAQSWVAN----NILPHHPQTIFRYIVLGNEILATS-----------DKV-------LIASLLPAMRTLKSALDAANLSS 156 (504)
Q Consensus 99 ~A~~Wv~~----~v~~y~p~~~I~~I~VGNEvl~~~-----------~~~-------~~~~Lv~am~~vk~aL~~~gl~~ 156 (504)
.+ .|..+ .+..| .+.|+.-+.=||...-. ... ....++-|-..+.+++++.+. +
T Consensus 139 ~~-~~F~~Ya~~~~~~~--gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~-~ 214 (455)
T PF00232_consen 139 TV-DWFARYAEFVFERF--GDRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYP-D 214 (455)
T ss_dssp HH-HHHHHHHHHHHHHH--TTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTC-T
T ss_pred HH-HHHHHHHHHHHHHh--CCCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhccc-c
Confidence 22 22221 12222 35788888889975420 000 122344444455566666553 3
Q ss_pred eeeeccccc
Q 037583 157 VQVSTPHSL 165 (504)
Q Consensus 157 IkVsT~~~~ 165 (504)
.+||.+++.
T Consensus 215 ~~IGi~~~~ 223 (455)
T PF00232_consen 215 GKIGIALNF 223 (455)
T ss_dssp SEEEEEEEE
T ss_pred eEEeccccc
Confidence 556665543
No 20
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=69.51 E-value=27 Score=38.45 Aligned_cols=183 Identities=16% Similarity=0.168 Sum_probs=98.8
Q ss_pred HHHHhhccCCCCCCeEEEEEeccccccCCCcchHHHHHHHHHHHHHHHHHcCCC-ceeeeccccccccccCCCCCccccc
Q 037583 102 SWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLS-SVQVSTPHSLGILSTSEPPSTGRFR 180 (504)
Q Consensus 102 ~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~~~~~~~~Lv~am~~vk~aL~~~gl~-~IkVsT~~~~~vl~~s~pPS~g~F~ 180 (504)
..|...|.+|--...|.+-..-||.+.+. +.+...++...+.+.+.++..+=+ -|.|+-+... |.. |-|-.+.|
T Consensus 124 kyvedlVk~yk~~ptI~gw~l~Ne~lv~~-p~s~N~f~~w~~emy~yiK~ldd~hlvsvGD~~sp--~~~-~~pyN~r~- 198 (587)
T COG3934 124 KYVEDLVKPYKLDPTIAGWALRNEPLVEA-PISVNNFWDWSGEMYAYIKWLDDGHLVSVGDPASP--WPQ-YAPYNARF- 198 (587)
T ss_pred HHHHHHhhhhccChHHHHHHhcCCccccc-cCChhHHHHHHHHHHHHhhccCCCCeeecCCcCCc--ccc-cCCcccce-
Confidence 45666677775556688888889977753 467788888999999999877644 3555544332 222 21212222
Q ss_pred ccchhHHHHHHHHHHhhcCCCceecCCCCCCCCCCCccccccCCCCceecCCCCccccchHHHHHHHHHHHHHHcCCCCc
Q 037583 181 KGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQTLNYALFKPNAGVFDPATGKNYTNMFDAQLDAVYSAMKKVGYEDV 260 (504)
Q Consensus 181 ~~~~~~~i~~~l~fL~~~~d~~~vNiyPyf~~~~i~~d~A~f~~~~~~~d~~~~~~Y~n~fda~~Dav~~a~~k~g~~~~ 260 (504)
+.|+-.-|+||+|.- ++ |+.- + ..|- ...+|- -+.+ +-+
T Consensus 199 -----------------~vDya~~hLY~hyd~---sl-~~r~----s-------~~yg---~~~l~i----~~~~--g~~ 237 (587)
T COG3934 199 -----------------YVDYAANHLYRHYDT---SL-VSRV----S-------TVYG---KPYLDI----PTIM--GWQ 237 (587)
T ss_pred -----------------eeccccchhhhhccC---Ch-hhee----e-------eeec---chhhcc----chhc--ccc
Confidence 456667899997773 22 1110 0 0010 001110 0112 248
Q ss_pred cEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCcceEEEEecccCCCCC-----CCCCCceeeec
Q 037583 261 DIVVGETGWPSAGDPNQPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNENLKP-----SISEQNFGLFK 335 (504)
Q Consensus 261 ~vvVsETGWPS~G~~~~~~as~~Na~~y~~~lv~~~~s~~GTp~rpg~~~~~yiF~~FDE~wK~-----~~~E~~wGlf~ 335 (504)
||+.-|.|-|++-+..+ |+ .-+.+++ + .....+.| --..-|+=|-+--.. ..-|-.|||.+
T Consensus 238 pV~leefGfsta~g~e~---s~-ayfiw~~-l-al~~ggdG--------aLiwclsdf~~gsdd~ey~w~p~el~fgiIr 303 (587)
T COG3934 238 PVNLEEFGFSTAFGQEN---SP-AYFIWIR-L-ALDTGGDG--------ALIWCLSDFHLGSDDSEYTWGPMELEFGIIR 303 (587)
T ss_pred eeeccccCCcccccccc---cc-hhhhhhh-h-HHhhcCCc--------eEEEEecCCccCCCCCCCccccccceeeeec
Confidence 99999999998643221 11 1122222 2 11111111 223334433311111 24577899999
Q ss_pred CCCceeeee
Q 037583 336 PDFTPVYDV 344 (504)
Q Consensus 336 ~d~~~ky~l 344 (504)
.|+.+|+..
T Consensus 304 adgpek~~a 312 (587)
T COG3934 304 ADGPEKIDA 312 (587)
T ss_pred CCCchhhhH
Confidence 999999974
No 21
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=68.36 E-value=23 Score=42.81 Aligned_cols=96 Identities=16% Similarity=0.115 Sum_probs=60.2
Q ss_pred ceeEEecCCCC---CCCCHHHH---HHHHHhcCCCCEEEEcc--CCHHHHHHHhcCCCcEEEEeCCCCc-----ccc-CC
Q 037583 31 SIGVNYGAIAN---NLPPPQQV---ANFLKTQTTIDRVKLFD--ANPEFLRAFAHTNIPVTVTVGNGDI-----PAL-AK 96 (504)
Q Consensus 31 ~~GVnYg~~~~---nlps~~~v---v~ll~k~~~i~~VRiY~--~d~~vL~A~a~tgi~V~lGV~n~~~-----~~~-~~ 96 (504)
..|+|+-.... ...+++++ ++++ |.+|++.||+-. .++..+..+.+.||-|+--++.+.. ..+ .+
T Consensus 352 lrGvn~h~~~p~~G~a~t~e~~~~di~lm-K~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~d 430 (1027)
T PRK09525 352 IRGVNRHEHHPEHGQVMDEETMVQDILLM-KQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDD 430 (1027)
T ss_pred EEEeEccccCcccCccCCHHHHHHHHHHH-HHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCC
Confidence 35888754322 23466554 5566 899999999954 3578999999999999987654211 111 12
Q ss_pred h---HHHHHHHHhhccCCCCCCeEEEEEeccccc
Q 037583 97 L---PAAQSWVANNILPHHPQTIFRYIVLGNEIL 127 (504)
Q Consensus 97 ~---~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl 127 (504)
+ ++..+-+++.|.+..-.--|..-++|||.-
T Consensus 431 p~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 431 PRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 2 122233445555544334689999999963
No 22
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=62.76 E-value=7.2 Score=36.82 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=26.3
Q ss_pred HHHHHhcCCCCEEEEccCCHHHHHHHhcCCCcEEEEeC
Q 037583 50 ANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVG 87 (504)
Q Consensus 50 v~ll~k~~~i~~VRiY~~d~~vL~A~a~tgi~V~lGV~ 87 (504)
.|.| +.+|+++||+.+.+|.-+.++.+.||+|.=-|+
T Consensus 132 aqIL-~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 132 AQIL-RDLGVKKMRLLTNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp HHHH-HHTT--SEEEE-S-HHHHHHHHHTT--EEEEE-
T ss_pred HHHH-HHcCCCEEEECCCChhHHHHHhcCCCEEEEEec
Confidence 6788 888999999999999999999999999975443
No 23
>PLN03059 beta-galactosidase; Provisional
Probab=59.00 E-value=68 Score=37.86 Aligned_cols=113 Identities=9% Similarity=-0.018 Sum_probs=69.8
Q ss_pred HHHHHHhcCCCCEEEEccC-----------C-------HHHHHHHhcCCCcEEEEe---------------CCCCccc--
Q 037583 49 VANFLKTQTTIDRVKLFDA-----------N-------PEFLRAFAHTNIPVTVTV---------------GNGDIPA-- 93 (504)
Q Consensus 49 vv~ll~k~~~i~~VRiY~~-----------d-------~~vL~A~a~tgi~V~lGV---------------~n~~~~~-- 93 (504)
.++.+ |..|++.|-+|-. | ..-|+.+++.||.|+|=. |.-..+.
T Consensus 64 ~L~k~-Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~ 142 (840)
T PLN03059 64 LIQKA-KDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIE 142 (840)
T ss_pred HHHHH-HHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcc
Confidence 45566 8899999999832 1 245788889999998843 3211122
Q ss_pred c--CCh---HHHHHHHHhhcc-----CC--CCCCeEEEEEeccccccCCCcchHHHHHHHHHHHHHHHHHcCCCceeeec
Q 037583 94 L--AKL---PAAQSWVANNIL-----PH--HPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSSVQVST 161 (504)
Q Consensus 94 ~--~~~---~~A~~Wv~~~v~-----~y--~p~~~I~~I~VGNEvl~~~~~~~~~~Lv~am~~vk~aL~~~gl~~IkVsT 161 (504)
+ .++ ++..+|+...+. ++ -.+..|..+=|-||-=.-. ......-..+|+.+++.++++|++ ||.-|
T Consensus 143 ~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs~~-~~~~~~d~~Yl~~l~~~~~~~Gi~-VPl~t 220 (840)
T PLN03059 143 FRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGPVE-WEIGAPGKAYTKWAADMAVKLGTG-VPWVM 220 (840)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEeccccccee-cccCcchHHHHHHHHHHHHHcCCC-cceEE
Confidence 2 222 456667555332 11 1246899999999952210 001112367999999999999985 77666
Q ss_pred ccc
Q 037583 162 PHS 164 (504)
Q Consensus 162 ~~~ 164 (504)
.+.
T Consensus 221 ~dg 223 (840)
T PLN03059 221 CKQ 223 (840)
T ss_pred CCC
Confidence 554
No 24
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=53.71 E-value=39 Score=26.20 Aligned_cols=44 Identities=14% Similarity=0.256 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHhcCCCCEEEEccCC-----HHHHHHHhcCCCcEEEEeCC
Q 037583 44 PPPQQVANFLKTQTTIDRVKLFDAN-----PEFLRAFAHTNIPVTVTVGN 88 (504)
Q Consensus 44 ps~~~vv~ll~k~~~i~~VRiY~~d-----~~vL~A~a~tgi~V~lGV~n 88 (504)
-++++.++.. +.+|++.|=+=|-+ +...+.+++.||+|+.|+..
T Consensus 15 ~~~~~~~~~a-~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~ 63 (67)
T smart00481 15 LSPEELVKRA-KELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEA 63 (67)
T ss_pred CCHHHHHHHH-HHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEE
Confidence 4688889988 88899988877766 45667777899999999864
No 25
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.80 E-value=55 Score=34.91 Aligned_cols=44 Identities=18% Similarity=0.326 Sum_probs=31.5
Q ss_pred HHcCCCCccEEEeeeccCCCCCCCC---CCCCHHHHHHHHHHHHHHHhcC
Q 037583 253 KKVGYEDVDIVVGETGWPSAGDPNQ---PESNLANALSYNGNLVKHVNSG 299 (504)
Q Consensus 253 ~k~g~~~~~vvVsETGWPS~G~~~~---~~as~~Na~~y~~~lv~~~~s~ 299 (504)
...|++.++|+++ |||.|.--+ .-.|...++.-++++++.+...
T Consensus 141 ~d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~ 187 (377)
T COG4782 141 HDSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLATD 187 (377)
T ss_pred hhcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHhC
Confidence 3457778899887 999997643 2356666677778888887653
No 26
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=47.65 E-value=25 Score=33.81 Aligned_cols=33 Identities=21% Similarity=0.478 Sum_probs=29.8
Q ss_pred HHHHHhcCCCCEEEEccCCHHHHHHHhcCCCcEE
Q 037583 50 ANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVT 83 (504)
Q Consensus 50 v~ll~k~~~i~~VRiY~~d~~vL~A~a~tgi~V~ 83 (504)
.|.| +.+|+++||+.+.++.-+.++.+.||+|.
T Consensus 131 AQIL-~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADIL-EDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHH-HHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 6788 88899999999998888889999999987
No 27
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=47.04 E-value=26 Score=33.95 Aligned_cols=33 Identities=24% Similarity=0.505 Sum_probs=30.0
Q ss_pred HHHHHhcCCCCEEEEccCCHHHHHHHhcCCCcEE
Q 037583 50 ANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVT 83 (504)
Q Consensus 50 v~ll~k~~~i~~VRiY~~d~~vL~A~a~tgi~V~ 83 (504)
.|.| +.+|+++||+.+.++.-+.++.+.||+|.
T Consensus 134 AQIL-~dLGV~~mrLLtn~~~k~~~L~g~GleV~ 166 (197)
T PRK00393 134 ADML-KALGVKKVRLLTNNPKKVEALTEAGINIV 166 (197)
T ss_pred HHHH-HHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 6788 88899999999998888889999999997
No 28
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=46.15 E-value=47 Score=36.49 Aligned_cols=47 Identities=13% Similarity=0.233 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCCCCEEEE-------cc-----CC-------HHHHHHHhcCCCcEEEEeCCCCccc
Q 037583 46 PQQVANFLKTQTTIDRVKL-------FD-----AN-------PEFLRAFAHTNIPVTVTVGNGDIPA 93 (504)
Q Consensus 46 ~~~vv~ll~k~~~i~~VRi-------Y~-----~d-------~~vL~A~a~tgi~V~lGV~n~~~~~ 93 (504)
-+|.+++| |++|++.-|. += .| .+++.+|.+.||+-+|.+.--+++.
T Consensus 56 y~eDi~L~-~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 121 (469)
T PRK13511 56 YPEDLKLA-EEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPE 121 (469)
T ss_pred hHHHHHHH-HHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcH
Confidence 47788999 9988877764 31 13 2689999999999999998766553
No 29
>PLN02998 beta-glucosidase
Probab=41.93 E-value=49 Score=36.73 Aligned_cols=75 Identities=20% Similarity=0.310 Sum_probs=43.9
Q ss_pred CCCccEEEeeeccCCCCCC-CCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCcceEEEEecccC-CCCCCCCCCceeee
Q 037583 257 YEDVDIVVGETGWPSAGDP-NQPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNE-NLKPSISEQNFGLF 334 (504)
Q Consensus 257 ~~~~~vvVsETGWPS~G~~-~~~~as~~Na~~y~~~lv~~~~s~~GTp~rpg~~~~~yiF~~FDE-~wK~~~~E~~wGlf 334 (504)
|++.||+|+|-|+....+. -...-=++--+.+++.+.+.+. .|-+. ..+|.-++.|- .|. .+.++.|||+
T Consensus 390 Y~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~--dGv~V-----~GY~~WSl~DnfEW~-~Gy~~RfGLv 461 (497)
T PLN02998 390 YGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLR--KGSDV-----KGYFQWSLMDVFELF-GGYERSFGLL 461 (497)
T ss_pred cCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCCE-----EEEeeccchhhhchh-ccccCccceE
Confidence 4455899999999864310 0000113334445555555553 45433 35677788874 243 3588999999
Q ss_pred cCCCc
Q 037583 335 KPDFT 339 (504)
Q Consensus 335 ~~d~~ 339 (504)
+.|..
T Consensus 462 ~VD~~ 466 (497)
T PLN02998 462 YVDFK 466 (497)
T ss_pred EECCC
Confidence 98754
No 30
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=41.04 E-value=62 Score=35.68 Aligned_cols=46 Identities=13% Similarity=0.257 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCCCCEEEE-------cc------CC-------HHHHHHHhcCCCcEEEEeCCCCcc
Q 037583 46 PQQVANFLKTQTTIDRVKL-------FD------AN-------PEFLRAFAHTNIPVTVTVGNGDIP 92 (504)
Q Consensus 46 ~~~vv~ll~k~~~i~~VRi-------Y~------~d-------~~vL~A~a~tgi~V~lGV~n~~~~ 92 (504)
-++.+++| |++|++.-|. += .| .+++..|.+.||+-+|.++--+++
T Consensus 69 y~eDi~Lm-~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP 134 (476)
T PRK09589 69 YKEDIALF-AEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMP 134 (476)
T ss_pred hHHHHHHH-HHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCC
Confidence 36788999 8888776654 41 23 268899999999999999876655
No 31
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=39.71 E-value=44 Score=31.45 Aligned_cols=20 Identities=20% Similarity=0.032 Sum_probs=17.8
Q ss_pred HHHHHHhcCCCcEEEEeCCC
Q 037583 70 EFLRAFAHTNIPVTVTVGNG 89 (504)
Q Consensus 70 ~vL~A~a~tgi~V~lGV~n~ 89 (504)
.+|+++.+.||+|++|++.+
T Consensus 69 ~~L~~A~~~Gmkv~~Gl~~~ 88 (166)
T PF14488_consen 69 MILDAADKYGMKVFVGLYFD 88 (166)
T ss_pred HHHHHHHHcCCEEEEeCCCC
Confidence 57899999999999999965
No 32
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=39.33 E-value=31 Score=36.81 Aligned_cols=33 Identities=12% Similarity=0.238 Sum_probs=29.5
Q ss_pred HHHHHhcCCCCEEEEccCCHHHHHHHhcCCCcEEE
Q 037583 50 ANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTV 84 (504)
Q Consensus 50 v~ll~k~~~i~~VRiY~~d~~vL~A~a~tgi~V~l 84 (504)
.|+| +.+|+++||+. .+|.=+.+|.+.||+|.=
T Consensus 331 AqIL-r~LGV~kirLL-nNP~K~~~L~~~GIeV~~ 363 (369)
T PRK12485 331 AQIL-QDLGVGKLRHL-GPPLKYAGLTGYDLEVVE 363 (369)
T ss_pred HHHH-HHcCCCEEEEC-CCchhhhhhhhCCcEEEE
Confidence 6788 99999999999 788888999999999973
No 33
>PLN02849 beta-glucosidase
Probab=39.25 E-value=1.1e+02 Score=33.93 Aligned_cols=75 Identities=21% Similarity=0.397 Sum_probs=44.1
Q ss_pred CCCccEEEeeeccCCCCCCCCCC---CCHHHHHHHHHHHHHHHhcCCCCCCCCCCcceEEEEecccCC-CCCCCCCCcee
Q 037583 257 YEDVDIVVGETGWPSAGDPNQPE---SNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNEN-LKPSISEQNFG 332 (504)
Q Consensus 257 ~~~~~vvVsETGWPS~G~~~~~~---as~~Na~~y~~~lv~~~~s~~GTp~rpg~~~~~yiF~~FDE~-wK~~~~E~~wG 332 (504)
|++.||+|+|-|++......+.. -=++--+.+++.+.+++. .|-+. ..+|.-++.|-- |. .+.++.||
T Consensus 383 Y~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~--dGv~V-----~GY~~WSl~DnfEW~-~Gy~~RfG 454 (503)
T PLN02849 383 YGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVR--NGSDT-----RGYFVWSFMDLYELL-KGYEFSFG 454 (503)
T ss_pred cCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCCE-----EEEeeccchhhhchh-ccccCccc
Confidence 55558999999998653211100 112233444455555553 45433 356777888742 33 35889999
Q ss_pred eecCCCc
Q 037583 333 LFKPDFT 339 (504)
Q Consensus 333 lf~~d~~ 339 (504)
|++.|..
T Consensus 455 Li~VD~~ 461 (503)
T PLN02849 455 LYSVNFS 461 (503)
T ss_pred eEEECCC
Confidence 9988765
No 34
>PLN02814 beta-glucosidase
Probab=38.96 E-value=1.1e+02 Score=34.10 Aligned_cols=75 Identities=19% Similarity=0.411 Sum_probs=43.9
Q ss_pred CCCccEEEeeeccCCCCCCC-CCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCcceEEEEecccC-CCCCCCCCCceeee
Q 037583 257 YEDVDIVVGETGWPSAGDPN-QPESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNE-NLKPSISEQNFGLF 334 (504)
Q Consensus 257 ~~~~~vvVsETGWPS~G~~~-~~~as~~Na~~y~~~lv~~~~s~~GTp~rpg~~~~~yiF~~FDE-~wK~~~~E~~wGlf 334 (504)
|++.||+|+|-|+....+.. ...-=.+--+.+++.+.+++. .|-|. ..+|.-++.|- .|. .+.++.|||+
T Consensus 385 Y~~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~--dGv~V-----~GY~~WSllDnfEW~-~Gy~~RfGLv 456 (504)
T PLN02814 385 YNNPPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIK--NGSDT-----RGYFVWSMIDLYELL-GGYTTSFGMY 456 (504)
T ss_pred cCCCCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCCE-----EEEeeccchhhhchh-ccccCccceE
Confidence 55668999999997542100 000112233444455555553 45443 35777788874 243 3589999999
Q ss_pred cCCCc
Q 037583 335 KPDFT 339 (504)
Q Consensus 335 ~~d~~ 339 (504)
+.|..
T Consensus 457 yVD~~ 461 (504)
T PLN02814 457 YVNFS 461 (504)
T ss_pred EECCC
Confidence 98765
No 35
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=37.42 E-value=4.9e+02 Score=28.62 Aligned_cols=246 Identities=15% Similarity=0.192 Sum_probs=110.7
Q ss_pred hcCCCCEEEEccC---C--------------------HHHHHHHhcCCCcEEEEeCC--CCcc----cc--C-----ChH
Q 037583 55 TQTTIDRVKLFDA---N--------------------PEFLRAFAHTNIPVTVTVGN--GDIP----AL--A-----KLP 98 (504)
Q Consensus 55 k~~~i~~VRiY~~---d--------------------~~vL~A~a~tgi~V~lGV~n--~~~~----~~--~-----~~~ 98 (504)
+..||+.||+... | -.++..+.+.||+-+|-+.- ..+. .. . .+.
T Consensus 50 ~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f~p~~~~~~~~~~~~~~~~~~pp~ 129 (486)
T PF01229_consen 50 EELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGFMPMALASGYQTVFWYKGNISPPK 129 (486)
T ss_dssp CCS--SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-SB-GGGBSS--EETTTTEE-S-BS
T ss_pred hccCceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEechhhhcCCCCccccccCCcCCcc
Confidence 6789999999742 1 15788889999997665542 1110 01 0 111
Q ss_pred HHHHH---H----HhhccCCCCCCeEE--EEEeccccccCC--CcchHHHHHHHHHHHHHHHHHcCCCceeeeccccccc
Q 037583 99 AAQSW---V----ANNILPHHPQTIFR--YIVLGNEILATS--DKVLIASLLPAMRTLKSALDAANLSSVQVSTPHSLGI 167 (504)
Q Consensus 99 ~A~~W---v----~~~v~~y~p~~~I~--~I~VGNEvl~~~--~~~~~~~Lv~am~~vk~aL~~~gl~~IkVsT~~~~~v 167 (504)
.-..| | +..+.+|. ...|. .+=|=||.=... ......+-....+...++||+..= .++|+-+-..
T Consensus 130 ~~~~W~~lv~~~~~h~~~RYG-~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~p-~~~vGGp~~~-- 205 (486)
T PF01229_consen 130 DYEKWRDLVRAFARHYIDRYG-IEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVDP-ELKVGGPAFA-- 205 (486)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH-HHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH-T-TSEEEEEEEE--
T ss_pred cHHHHHHHHHHHHHHHHhhcC-CccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhCC-CCcccCcccc--
Confidence 22223 2 33333331 11111 456789964331 123344566677777777877643 5788876110
Q ss_pred cccCCCCCcccccccchhHHHHHHHHHHhhc---CCCceecCCCCCCCCCCCccccccCCCCceecCCCCccccchHHHH
Q 037583 168 LSTSEPPSTGRFRKGYDRLIFARILEFHRQT---KSPFMVNPYPYFGFKPQTLNYALFKPNAGVFDPATGKNYTNMFDAQ 244 (504)
Q Consensus 168 l~~s~pPS~g~F~~~~~~~~i~~~l~fL~~~---~d~~~vNiyPyf~~~~i~~d~A~f~~~~~~~d~~~~~~Y~n~fda~ 244 (504)
+. .. ..+...++|+... -|++..|.||+-...++. ......- .....+++.
T Consensus 206 ~~-------------~~-~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~~---------~~~~~~~--~~~~~~~~~- 259 (486)
T PF01229_consen 206 WA-------------YD-EWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDIN---------ENMYERI--EDSRRLFPE- 259 (486)
T ss_dssp TT--------------T-HHHHHHHHHHHHCT---SEEEEEEE-BESESE-S---------S-EEEEB----HHHHHHH-
T ss_pred cc-------------HH-HHHHHHHHHHhcCCCCCCEEEEEecccccccccc---------hhHHhhh--hhHHHHHHH-
Confidence 00 00 2456677777653 488888888864321000 0000000 001112222
Q ss_pred HHHHHHHHHHcCCCCccEEEeeeccCCCCCCCC-CCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCcceEE---EE-eccc
Q 037583 245 LDAVYSAMKKVGYEDVDIVVGETGWPSAGDPNQ-PESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVY---IF-ALFN 319 (504)
Q Consensus 245 ~Dav~~a~~k~g~~~~~vvVsETGWPS~G~~~~-~~as~~Na~~y~~~lv~~~~s~~GTp~rpg~~~~~y---iF-~~FD 319 (504)
+.-+...+...+++++++.++| |.+.-.... -.-|.-+|+-..++++..... .++.| .| ..|.
T Consensus 260 ~~~~~~~~~~e~~p~~~~~~tE--~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~----------~l~~~sywt~sD~Fe 327 (486)
T PF01229_consen 260 LKETRPIINDEADPNLPLYITE--WNASISPRNPQHDTCFKAAYIAKNLLSNDGA----------FLDSFSYWTFSDRFE 327 (486)
T ss_dssp HHHHHHHHHTSSSTT--EEEEE--EES-SSTT-GGGGSHHHHHHHHH-HHHHGGG----------T-SEEEES-SBS---
T ss_pred HHHHHHHHhhccCCCCceeecc--cccccCCCcchhccccchhhHHHHHHHhhhh----------hhhhhhccchhhhhh
Confidence 2222234455678899999999 766443321 123455666556666666432 12222 12 2344
Q ss_pred CCCCC-CCCCCceeeecCCCceee
Q 037583 320 ENLKP-SISEQNFGLFKPDFTPVY 342 (504)
Q Consensus 320 E~wK~-~~~E~~wGlf~~d~~~ky 342 (504)
|+--+ ..+-.-|||+..+|-+|-
T Consensus 328 e~~~~~~pf~ggfGLlt~~gI~KP 351 (486)
T PF01229_consen 328 ENGTPRKPFHGGFGLLTKLGIPKP 351 (486)
T ss_dssp TTSS-SSSSSS-S-SEECCCEE-H
T ss_pred ccCCCCCceecchhhhhccCCCch
Confidence 43333 235556999999986653
No 36
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=37.33 E-value=1.5e+02 Score=29.34 Aligned_cols=43 Identities=16% Similarity=0.329 Sum_probs=26.1
Q ss_pred HHcCCCCccEEEeeeccCCCCCCCC---CCCCHHHHHHHHHHHHHHHhc
Q 037583 253 KKVGYEDVDIVVGETGWPSAGDPNQ---PESNLANALSYNGNLVKHVNS 298 (504)
Q Consensus 253 ~k~g~~~~~vvVsETGWPS~G~~~~---~~as~~Na~~y~~~lv~~~~s 298 (504)
..+++++++|++ .|||.|...+ ...+...++..+.++++.+..
T Consensus 43 ~~~~~~~~~i~F---sWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~ 88 (233)
T PF05990_consen 43 HDLGFPGVVILF---SWPSDGSLLGYFYDRESARFSGPALARFLRDLAR 88 (233)
T ss_pred HHhCCCceEEEE---EcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 346677755555 6999997543 223444555556667776654
No 37
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=36.49 E-value=37 Score=36.23 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=31.0
Q ss_pred HHHHHhcCCCCEEEEccCCHHHHHHHhcCCCcEEEEeC
Q 037583 50 ANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVG 87 (504)
Q Consensus 50 v~ll~k~~~i~~VRiY~~d~~vL~A~a~tgi~V~lGV~ 87 (504)
.|.| +.+|+++||+.. +|.=+.+|.+.||+|.==++
T Consensus 328 aqIL-~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~~ 363 (367)
T PRK14019 328 AQIL-RDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYVP 363 (367)
T ss_pred HHHH-HHcCCCeEEECC-CcHHHHhhhhCCcEEEEEec
Confidence 6788 899999999999 89889999999999974333
No 38
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=36.47 E-value=47 Score=31.99 Aligned_cols=34 Identities=29% Similarity=0.416 Sum_probs=30.1
Q ss_pred HHHHHhcCCCCEEEEccCCHHHHHHHhcCCCcEEE
Q 037583 50 ANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTV 84 (504)
Q Consensus 50 v~ll~k~~~i~~VRiY~~d~~vL~A~a~tgi~V~l 84 (504)
.|.| +.+|++++|+.+..+.-+.+|.+.||+|.=
T Consensus 133 AQIL-~dLGv~~mrLLs~~~~k~~~L~gfglevv~ 166 (193)
T cd00641 133 AQIL-RDLGIKSVRLLTNNPDKIDALEGYGIEVVE 166 (193)
T ss_pred HHHH-HHcCCCeEEECCCCHHHHHHHHhCCCEEEE
Confidence 6788 888999999999988788899999999973
No 39
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=35.09 E-value=4.4e+02 Score=25.77 Aligned_cols=106 Identities=18% Similarity=0.201 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHhcCCCCEEEEccCC-----------HHHHHHHhcCCCcEEEEeCCCC---cccc---CChHHHHHHHHh
Q 037583 44 PPPQQVANFLKTQTTIDRVKLFDAN-----------PEFLRAFAHTNIPVTVTVGNGD---IPAL---AKLPAAQSWVAN 106 (504)
Q Consensus 44 ps~~~vv~ll~k~~~i~~VRiY~~d-----------~~vL~A~a~tgi~V~lGV~n~~---~~~~---~~~~~A~~Wv~~ 106 (504)
|+. ...+.| |+.|...|=.|=++ +.=++.+...|++++. |++.. .... .....|.+-++.
T Consensus 21 ~t~-~~a~~l-~~~gy~~vgrYls~~~~~~~~k~lt~~e~~~i~~~Gl~~~p-Iyq~~~~~~~~~~~~~G~~dA~~A~~~ 97 (212)
T cd06418 21 PTD-ARAQTL-KAAGYGIVGRYLTGSPGGCLSKNLTATELETITAAGLKVFP-IYQGGGYSLDYFGYEQGVKDARDAVAA 97 (212)
T ss_pred CCH-HHHHHH-HHCCCeEEEEEcCCCCCCCCCCCCCHHHHHHHHHCCCEEEE-EEECCCccccccCHHHHHHHHHHHHHH
Confidence 554 666778 88888777666332 2447788899999865 34322 1111 122344444444
Q ss_pred hccCCCCCCeEEEEEeccccccCCCcchHHHHHHHHHHHHHHHHHcCCC
Q 037583 107 NILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLS 155 (504)
Q Consensus 107 ~v~~y~p~~~I~~I~VGNEvl~~~~~~~~~~Lv~am~~vk~aL~~~gl~ 155 (504)
+..--.|...+.++.|=..... ......++|+++-+.++|...||.
T Consensus 98 A~~lG~p~gs~IYfavD~d~~~---~~~~~~v~~Y~~a~~~~l~~~gY~ 143 (212)
T cd06418 98 ARALGFPPGTIIYFAVDFDALD---DEVTEVILPYFRGWNDALHEAGYR 143 (212)
T ss_pred HHHcCCCCCCEEEEEeecCCCc---chhHHHHHHHHHHHHHHHHhcCCc
Confidence 4444457677888998554432 234568999999999999999986
No 40
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=34.55 E-value=5.4e+02 Score=28.23 Aligned_cols=136 Identities=14% Similarity=0.185 Sum_probs=80.6
Q ss_pred ceeEEecCCCCCCC----CHHHHHHHHHhcCCCCEEEEccCCH-----HHHHHHhcC-CCcEEEEeCCCCccccCChHHH
Q 037583 31 SIGVNYGAIANNLP----PPQQVANFLKTQTTIDRVKLFDANP-----EFLRAFAHT-NIPVTVTVGNGDIPALAKLPAA 100 (504)
Q Consensus 31 ~~GVnYg~~~~nlp----s~~~vv~ll~k~~~i~~VRiY~~d~-----~vL~A~a~t-gi~V~lGV~n~~~~~~~~~~~A 100 (504)
.+|.|-+.||.|++ +-.+.++.|.+--|+.+||+=..+| +++++++++ .+-=.+-+|.. +-++ ..
T Consensus 195 L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQ---sGsd--~I 269 (437)
T COG0621 195 LTGQDVNAYGKDLGGGKPNLADLLRELSKIPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQ---SGSD--RI 269 (437)
T ss_pred EEEEehhhccccCCCCccCHHHHHHHHhcCCCceEEEEecCCchhcCHHHHHHHhcCCcccccccCccc---cCCH--HH
Confidence 46888888888875 3455555553446789999977664 788888875 44434544432 2111 01
Q ss_pred HHHHHhhccCCCCCCeEEEEEeccccccCCCcchHHHHHHHHHHHHHHHHHcCCC-ceeeeccccccccccCCCCCcccc
Q 037583 101 QSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLS-SVQVSTPHSLGILSTSEPPSTGRF 179 (504)
Q Consensus 101 ~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~~~~~~~~Lv~am~~vk~aL~~~gl~-~IkVsT~~~~~vl~~s~pPS~g~F 179 (504)
+ +. +.|. .+..+.+.-++.+|++....-++ +|-||-|-.
T Consensus 270 ---L-k~-------------------M~R~--yt~e~~~~~i~k~R~~~Pd~~i~tDiIVGFPgE--------------- 309 (437)
T COG0621 270 ---L-KR-------------------MKRG--YTVEEYLEIIEKLRAARPDIAISTDIIVGFPGE--------------- 309 (437)
T ss_pred ---H-HH-------------------hCCC--cCHHHHHHHHHHHHHhCCCceEeccEEEECCCC---------------
Confidence 1 11 1232 35677888888898887755444 444443321
Q ss_pred cccchhHHHHHHHHHHhhcCCCceecCCCCCCCCCCC
Q 037583 180 RKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQT 216 (504)
Q Consensus 180 ~~~~~~~~i~~~l~fL~~~~d~~~vNiyPyf~~~~i~ 216 (504)
.+......++|+. ..-|=.+|+++|=...+.+
T Consensus 310 ----TeedFe~tl~lv~-e~~fd~~~~F~YSpRpGTp 341 (437)
T COG0621 310 ----TEEDFEETLDLVE-EVRFDRLHVFKYSPRPGTP 341 (437)
T ss_pred ----CHHHHHHHHHHHH-HhCCCEEeeeecCCCCCCc
Confidence 1123445666664 5567789999997763333
No 41
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=34.51 E-value=75 Score=35.07 Aligned_cols=75 Identities=9% Similarity=0.126 Sum_probs=43.5
Q ss_pred CccEEEeeeccCCCCCCCCCC-----CCHHHHHHHHHHHHHHHhcCCCCCCCCCCcceEEEEecccC-CCCCCCCCCcee
Q 037583 259 DVDIVVGETGWPSAGDPNQPE-----SNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNE-NLKPSISEQNFG 332 (504)
Q Consensus 259 ~~~vvVsETGWPS~G~~~~~~-----as~~Na~~y~~~lv~~~~s~~GTp~rpg~~~~~yiF~~FDE-~wK~~~~E~~wG 332 (504)
++||+|+|-|+.......+.+ -=++--+.+++.+.+++. ..|-+. ..+|.-++.|- .|..++..+.||
T Consensus 368 ~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~-~dGv~v-----~GY~~WSl~DnfEw~~G~y~~RfG 441 (477)
T PRK15014 368 QKPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVT-YDGVDL-----MGYTPWGCIDCVSFTTGQYSKRYG 441 (477)
T ss_pred CCCEEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHH-HcCCCE-----EEEeeccchhhhcccCCCccCccc
Confidence 468999999998643211111 112233444455555552 135433 35777788874 255455889999
Q ss_pred eecCCCc
Q 037583 333 LFKPDFT 339 (504)
Q Consensus 333 lf~~d~~ 339 (504)
|++.|.+
T Consensus 442 l~~VD~~ 448 (477)
T PRK15014 442 FIYVNKH 448 (477)
T ss_pred eEEECCC
Confidence 9987654
No 42
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=32.92 E-value=4.4e+02 Score=28.76 Aligned_cols=200 Identities=15% Similarity=0.160 Sum_probs=95.3
Q ss_pred ecCCCCCCCCHHHHHHHHH--hcCCCCEEEEccCC-----------HHHHHHHhcC-CC-cEEEEeCCCCccccCChHHH
Q 037583 36 YGAIANNLPPPQQVANFLK--TQTTIDRVKLFDAN-----------PEFLRAFAHT-NI-PVTVTVGNGDIPALAKLPAA 100 (504)
Q Consensus 36 Yg~~~~nlps~~~vv~ll~--k~~~i~~VRiY~~d-----------~~vL~A~a~t-gi-~V~lGV~n~~~~~~~~~~~A 100 (504)
+|+. .--++++|++.++ ...|++.|.+.+.| .++|+++.+. ++ .+-++..+. ..+ + +..
T Consensus 177 rG~~--rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p--~~~-~-~el 250 (449)
T PRK14332 177 RGRE--RSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQSTDFAGLIQMLLDETTIERIRFTSPHP--KDF-P-DHL 250 (449)
T ss_pred cCCc--ccCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCCcccHHHHHHHHhcCCCcceEEEECCCc--ccC-C-HHH
Confidence 4444 3345788765441 34688999888654 2445555432 32 222222221 112 1 111
Q ss_pred HHHHHhhccCCCCCCeEEEEEeccc-----cccC-CCcchHHHHHHHHHHHHHHHHHcCCCceeeeccccccccccCCCC
Q 037583 101 QSWVANNILPHHPQTIFRYIVLGNE-----ILAT-SDKVLIASLLPAMRTLKSALDAANLSSVQVSTPHSLGILSTSEPP 174 (504)
Q Consensus 101 ~~Wv~~~v~~y~p~~~I~~I~VGNE-----vl~~-~~~~~~~~Lv~am~~vk~aL~~~gl~~IkVsT~~~~~vl~~s~pP 174 (504)
...+++ . + .....|.+|=| +|-+ +-..+..+...+++.+|++... +.++|. ++. .||-
T Consensus 251 l~~m~~----~-~-~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p~-----i~i~td----~Iv-GfPg 314 (449)
T PRK14332 251 LSLMAK----N-P-RFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVPD-----VGITTD----IIV-GFPN 314 (449)
T ss_pred HHHHHh----C-C-CccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCCC-----CEEEEE----EEe-eCCC
Confidence 222222 1 1 12456777733 3321 1134677888888888876432 334332 222 1431
Q ss_pred CcccccccchhHHHHHHHHHHhhcCCCceecCCCCCCCCCCCccccccCCCCceecCCCCccccchHHHHHHHHHHHHHH
Q 037583 175 STGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQTLNYALFKPNAGVFDPATGKNYTNMFDAQLDAVYSAMKK 254 (504)
Q Consensus 175 S~g~F~~~~~~~~i~~~l~fL~~~~d~~~vNiyPyf~~~~i~~d~A~f~~~~~~~d~~~~~~Y~n~fda~~Dav~~a~~k 254 (504)
| .+..+...++|+.+ ..+-.+++|+|-...+.+. +..+. ..+.+.....++..+.+-|-.-.....++
T Consensus 315 -------E-T~edf~~tl~~v~~-l~~~~~~~f~ys~~~GT~a-~~~~~--~~v~~~~~~~R~~~l~~~~~~~~~~~~~~ 382 (449)
T PRK14332 315 -------E-TEEEFEDTLAVVRE-VQFDMAFMFKYSEREGTMA-KRKLP--DNVPEEVKSARLTKLVDLQTSISHEQNRA 382 (449)
T ss_pred -------C-CHHHHHHHHHHHHh-CCCCEEEEEEecCCCCChh-HHhCc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12356677888754 4455678888877633332 11121 11222222234555555444433333444
Q ss_pred cCCCCccEEEeeecc
Q 037583 255 VGYEDVDIVVGETGW 269 (504)
Q Consensus 255 ~g~~~~~vvVsETGW 269 (504)
.-....+|+|-|.+.
T Consensus 383 ~vG~~~~vlve~~~~ 397 (449)
T PRK14332 383 RIGRVYSILIENTSR 397 (449)
T ss_pred hcCCEEEEEEEeccC
Confidence 322457888866443
No 43
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=32.90 E-value=49 Score=34.91 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=30.2
Q ss_pred HHHHHHhcCCCCEEEEccCC-HHHHHHHhcCCCcEE
Q 037583 49 VANFLKTQTTIDRVKLFDAN-PEFLRAFAHTNIPVT 83 (504)
Q Consensus 49 vv~ll~k~~~i~~VRiY~~d-~~vL~A~a~tgi~V~ 83 (504)
-.|.| +.+|+++||+...+ |.-+.++.+.||+|.
T Consensus 300 gaqIL-~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 300 GAQIL-KYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHH-HHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 36788 88899999999999 888889999999986
No 44
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=32.84 E-value=1.1e+02 Score=31.35 Aligned_cols=82 Identities=16% Similarity=0.133 Sum_probs=49.7
Q ss_pred HHHHHHHhcCCCcEEEEeCCCC--------cccc-CChHHHHHHHHhhccCCCCCCeEEEEEeccccccCCCcchHHHHH
Q 037583 69 PEFLRAFAHTNIPVTVTVGNGD--------IPAL-AKLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLL 139 (504)
Q Consensus 69 ~~vL~A~a~tgi~V~lGV~n~~--------~~~~-~~~~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~~~~~~~~Lv 139 (504)
+.++.++++.|+||++.|.+.. ...+ +++..-...++ ++..+...-.+.+|-+-=|.+.. .......
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi~-~iv~~l~~~~~DGidiDwE~~~~---~d~~~~~ 123 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLIN-NILALAKKYGYDGVNIDFENVPP---EDREAYT 123 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHHHH-HHHHHHHHhCCCcEEEecccCCH---HHHHHHH
Confidence 6788888888999998887642 1223 44332222322 23222211235566665565432 3456688
Q ss_pred HHHHHHHHHHHHcCC
Q 037583 140 PAMRTLKSALDAANL 154 (504)
Q Consensus 140 ~am~~vk~aL~~~gl 154 (504)
.-|+.+|.+|++.|+
T Consensus 124 ~fl~~lr~~l~~~~~ 138 (313)
T cd02874 124 QFLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHHhhhcCc
Confidence 999999999988775
No 45
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=32.81 E-value=53 Score=35.31 Aligned_cols=38 Identities=29% Similarity=0.368 Sum_probs=32.8
Q ss_pred HHHHHhcCCCCEEEEccCCHHHHHHHhcCCCcEEEEeCC
Q 037583 50 ANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGN 88 (504)
Q Consensus 50 v~ll~k~~~i~~VRiY~~d~~vL~A~a~tgi~V~lGV~n 88 (504)
.|.| +.+|+++||+...+|.=+.++.+.||+|.=-++.
T Consensus 320 AqIL-~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vpl 357 (387)
T PRK09318 320 FQIL-KALGIEKVRLLTNNPRKTKALEKYGIEVVETVPL 357 (387)
T ss_pred HHHH-HHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecc
Confidence 6778 8889999999999999999999999999854443
No 46
>PRK08815 GTP cyclohydrolase; Provisional
Probab=31.87 E-value=56 Score=34.99 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=32.0
Q ss_pred HHHHHhcCCCCEEEEccCCHHHHHHHhcCCCcEEEEeC
Q 037583 50 ANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVG 87 (504)
Q Consensus 50 v~ll~k~~~i~~VRiY~~d~~vL~A~a~tgi~V~lGV~ 87 (504)
.|.| +.+|+++||+...++.=+.++.+.||+|.==++
T Consensus 305 AQIL-~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 305 VAML-RGLGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHHH-HHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6788 888999999999999888999999999974444
No 47
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=31.76 E-value=1.8e+02 Score=29.37 Aligned_cols=116 Identities=16% Similarity=0.180 Sum_probs=63.1
Q ss_pred CHHHHHHHHHhcCCCCEEEEccCCHHHHHHHhcCCCcEEEEeCCCCccccCChHHHHHHHHhhccCCCCCCeEEEEEecc
Q 037583 45 PPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPAAQSWVANNILPHHPQTIFRYIVLGN 124 (504)
Q Consensus 45 s~~~vv~ll~k~~~i~~VRiY~~d~~vL~A~a~tgi~V~lGV~n~~~~~~~~~~~A~~Wv~~~v~~y~p~~~I~~I~VGN 124 (504)
.+.|++.+| .++||+.-|.= -++.|.. +-|.. ++..+|.+|++.+=.|.-+.+++.=++=.+
T Consensus 32 eANemlAlL-~~~gI~A~K~~---------~~~g~~~--l~Ve~------~~fa~Av~iL~~~GlPr~~f~~l~d~Fp~d 93 (246)
T COG4669 32 EANEMLALL-MSHGINAEKKA---------DKDGGTS--LLVEE------SDFAEAVEILNQNGLPRKKFTTLGDIFPKD 93 (246)
T ss_pred HHHHHHHHH-HHcCCcceeec---------cCCCceE--EEEcH------HHHHHHHHHHHhcCCCCCCCCcHHHhCCcc
Confidence 457889999 99999877771 1122222 33332 124678899998877766666666666666
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHHHHc-C-CC-ceeeeccccccccccC-CCCCcccc
Q 037583 125 EILATSDKVLIASLLPAMRTLKSALDAA-N-LS-SVQVSTPHSLGILSTS-EPPSTGRF 179 (504)
Q Consensus 125 Evl~~~~~~~~~~Lv~am~~vk~aL~~~-g-l~-~IkVsT~~~~~vl~~s-~pPS~g~F 179 (504)
--+...-.+-+...-.-=+++-..|+.. | ++ +|.|+-++. +..... -|-|+..|
T Consensus 94 gLVsSP~eEkaR~~~~~eQ~le~tLs~mDGVi~ArV~I~lp~~-~~~g~~~~P~saSVf 151 (246)
T COG4669 94 GLVSSPTEEKARLNYAKEQQLEQTLSKMDGVISARVHISLPED-DDEGKNALPSSASVF 151 (246)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHhcCceEEEEEEEEcCCC-CccCCCCCCceeEEE
Confidence 5554421122222222334555556543 3 23 566776655 333332 23344444
No 48
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=31.60 E-value=57 Score=35.24 Aligned_cols=37 Identities=22% Similarity=0.331 Sum_probs=32.0
Q ss_pred HHHHHhcCCCCEEEEccCCHHHHHHHhcCCCcEEEEeC
Q 037583 50 ANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVG 87 (504)
Q Consensus 50 v~ll~k~~~i~~VRiY~~d~~vL~A~a~tgi~V~lGV~ 87 (504)
.|.| +.+|+++||+...+|.=+.++.+.||+|.==++
T Consensus 339 aqIL-~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v~ 375 (402)
T PRK09311 339 AQIL-VDLGVRSMRLLTNNPRKIAGLQGYGLHVTERVP 375 (402)
T ss_pred HHHH-HHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 6788 889999999999999889999999999974343
No 49
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=31.52 E-value=6.6e+02 Score=26.75 Aligned_cols=144 Identities=13% Similarity=0.116 Sum_probs=71.0
Q ss_pred CCCHHHHHHHHH--hcCCCCEEEEccCC--------------HHHHHHHhcC-CCc-EEEEeCCCCccccCChHHHHHHH
Q 037583 43 LPPPQQVANFLK--TQTTIDRVKLFDAN--------------PEFLRAFAHT-NIP-VTVTVGNGDIPALAKLPAAQSWV 104 (504)
Q Consensus 43 lps~~~vv~ll~--k~~~i~~VRiY~~d--------------~~vL~A~a~t-gi~-V~lGV~n~~~~~~~~~~~A~~Wv 104 (504)
.-++++|++.++ ...|++.|.+.+.| .++++++.+. |++ +-++--. ...+ +++ ...++
T Consensus 166 ~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~--p~~~-~~e-ll~~m 241 (414)
T TIGR01579 166 SVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQIPGIKRIRLSSID--PEDI-DEE-LLEAI 241 (414)
T ss_pred cCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhcCCCCcEEEEeCCC--hhhC-CHH-HHHHH
Confidence 456788876541 34689999875421 2566666643 442 3433111 1112 111 22333
Q ss_pred HhhccCCCCCCeEEEEEeccccccC----C--CcchHHHHHHHHHHHHHHHHHcCCCceeeeccccccccccCCCCCccc
Q 037583 105 ANNILPHHPQTIFRYIVLGNEILAT----S--DKVLIASLLPAMRTLKSALDAANLSSVQVSTPHSLGILSTSEPPSTGR 178 (504)
Q Consensus 105 ~~~v~~y~p~~~I~~I~VGNEvl~~----~--~~~~~~~Lv~am~~vk~aL~~~gl~~IkVsT~~~~~vl~~s~pPS~g~ 178 (504)
+++ + .....|.+|=|-... . ...+......+++.+|+.. .| +.+++..-. .+|-
T Consensus 242 ~~~-----~-~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~--~g---i~i~~~~Iv-----G~Pg---- 301 (414)
T TIGR01579 242 ASE-----K-RLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVR--PD---YAFGTDIIV-----GFPG---- 301 (414)
T ss_pred Hhc-----C-ccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhC--CC---CeeeeeEEE-----ECCC----
Confidence 321 1 012345565554332 1 1235567777777777643 23 334333211 1331
Q ss_pred ccccchhHHHHHHHHHHhhcCCCceecCCCCCCCCCC
Q 037583 179 FRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQ 215 (504)
Q Consensus 179 F~~~~~~~~i~~~l~fL~~~~d~~~vNiyPyf~~~~i 215 (504)
|- ...+...++|+.+. .+-.+++|||--+.+.
T Consensus 302 ---ET-~ed~~~tl~~i~~~-~~~~~~~~~~sp~pGT 333 (414)
T TIGR01579 302 ---ES-EEDFQETLRMVKEI-EFSHLHIFPYSARPGT 333 (414)
T ss_pred ---CC-HHHHHHHHHHHHhC-CCCEEEeeecCCCCCC
Confidence 11 13567788888754 4567788888776333
No 50
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=31.50 E-value=1.3e+02 Score=33.27 Aligned_cols=75 Identities=11% Similarity=0.157 Sum_probs=44.0
Q ss_pred CccEEEeeeccCCCCCCC--CCC---CCHHHHHHHHHHHHHHHhcCCCCCCCCCCcceEEEEecccC-CCCCCCCCCcee
Q 037583 259 DVDIVVGETGWPSAGDPN--QPE---SNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNE-NLKPSISEQNFG 332 (504)
Q Consensus 259 ~~~vvVsETGWPS~G~~~--~~~---as~~Na~~y~~~lv~~~~s~~GTp~rpg~~~~~yiF~~FDE-~wK~~~~E~~wG 332 (504)
++||+|+|-|........ +.. -=++--+.+++.+.+++. ..|-+. ..+|.-++.|- .|..++.++.||
T Consensus 368 ~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~-~dGv~v-----~GY~~WSl~Dn~EW~~G~y~~RfG 441 (478)
T PRK09593 368 QKPMFIVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAIN-EDGVEL-----LGYTTWGCIDLVSAGTGEMKKRYG 441 (478)
T ss_pred CCCEEEEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHH-HcCCCE-----EEEeeccchHhhcccCCCccCeec
Confidence 358999999997543221 100 113334445555555552 135433 35777788874 254444889999
Q ss_pred eecCCCc
Q 037583 333 LFKPDFT 339 (504)
Q Consensus 333 lf~~d~~ 339 (504)
|++.|..
T Consensus 442 l~~VD~~ 448 (478)
T PRK09593 442 FIYVDRD 448 (478)
T ss_pred eEEECCC
Confidence 9988755
No 51
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=31.33 E-value=56 Score=35.83 Aligned_cols=37 Identities=19% Similarity=0.276 Sum_probs=32.0
Q ss_pred HHHHHhcCCCCEEEEccCCHHHHHHHhcCCCcEEEEeC
Q 037583 50 ANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVG 87 (504)
Q Consensus 50 v~ll~k~~~i~~VRiY~~d~~vL~A~a~tgi~V~lGV~ 87 (504)
.|.| +.+|+++||+...+|.=+.++.+.||+|.==++
T Consensus 373 AqIL-~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 373 AQIL-RDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HHHH-HHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 6788 888999999999999999999999999974443
No 52
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=31.10 E-value=3e+02 Score=29.58 Aligned_cols=105 Identities=11% Similarity=0.003 Sum_probs=61.1
Q ss_pred HHHHHHHHhcCCCCEEEEccC----------CH------------HHHHHHhcCCCcEEEEeCCCC-------cc----c
Q 037583 47 QQVANFLKTQTTIDRVKLFDA----------NP------------EFLRAFAHTNIPVTVTVGNGD-------IP----A 93 (504)
Q Consensus 47 ~~vv~ll~k~~~i~~VRiY~~----------d~------------~vL~A~a~tgi~V~lGV~n~~-------~~----~ 93 (504)
+++...+ |+.|++.|||.-. +| ++++.+.+.||+|++.+-... .. .
T Consensus 76 ~~~~~~i-k~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~ 154 (407)
T COG2730 76 EEDFDQI-KSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSD 154 (407)
T ss_pred hhHHHHH-HHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCccccccc
Confidence 5667788 9999999999732 32 346677789999999855422 00 1
Q ss_pred cCC-----hHHHHHHHHhhccCCCCCCeEEEEEeccccccCCCcchHHHH-HHHHHHHHHHHHHcC
Q 037583 94 LAK-----LPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASL-LPAMRTLKSALDAAN 153 (504)
Q Consensus 94 ~~~-----~~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~~~~~~~~L-v~am~~vk~aL~~~g 153 (504)
..+ ......| +....+|-....|.+|-+=||+..-.....+..- -+|..-|++.+...-
T Consensus 155 ~~~~~~~~~~~~~~w-~~ia~~f~~~~~VIg~~~~NEP~~~~~~~~w~~~~~~A~~~v~~~i~~~~ 219 (407)
T COG2730 155 YKEENENVEATIDIW-KFIANRFKNYDTVIGFELINEPNGIVTSETWNGGDDEAYDVVRNAILSNA 219 (407)
T ss_pred ccccchhHHHHHHHH-HHHHHhccCCCceeeeeeecCCcccCCccccccchHHHHHHHHhhhhhcC
Confidence 112 1222333 1222334345678888889999841001223333 477777876665443
No 53
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=30.75 E-value=59 Score=36.54 Aligned_cols=38 Identities=24% Similarity=0.332 Sum_probs=33.1
Q ss_pred HHHHHhcCCCCEEEEccCCHHHHHHHhcCCCcEEEEeCC
Q 037583 50 ANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGN 88 (504)
Q Consensus 50 v~ll~k~~~i~~VRiY~~d~~vL~A~a~tgi~V~lGV~n 88 (504)
.|.| +.+|+++||+..-+|.=+.++++.||+|.==++.
T Consensus 343 AQIL-~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvpl 380 (555)
T PRK09319 343 AQIL-NDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVPL 380 (555)
T ss_pred HHHH-HHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecc
Confidence 6788 8899999999999999999999999999854543
No 54
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=30.43 E-value=98 Score=28.06 Aligned_cols=43 Identities=19% Similarity=0.328 Sum_probs=33.2
Q ss_pred CHHHHHHHHHhcCCCCEEEEccC---------------------C--HHHHHHHhcCCCcEEEEeCC
Q 037583 45 PPQQVANFLKTQTTIDRVKLFDA---------------------N--PEFLRAFAHTNIPVTVTVGN 88 (504)
Q Consensus 45 s~~~vv~ll~k~~~i~~VRiY~~---------------------d--~~vL~A~a~tgi~V~lGV~n 88 (504)
+|++.++.| |..+++.|-+|.- | .++++|+.+.||+|++=+..
T Consensus 1 D~~~~~~~l-k~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~ 66 (132)
T PF14871_consen 1 DPEQFVDTL-KEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDF 66 (132)
T ss_pred CHHHHHHHH-HHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEee
Confidence 367888888 8888888888653 1 37789999999999887654
No 55
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=29.11 E-value=1.1e+02 Score=26.87 Aligned_cols=37 Identities=16% Similarity=0.252 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCCCEEEEcc--CC---HHHHHHHhcCCCcEEE
Q 037583 47 QQVANFLKTQTTIDRVKLFD--AN---PEFLRAFAHTNIPVTV 84 (504)
Q Consensus 47 ~~vv~ll~k~~~i~~VRiY~--~d---~~vL~A~a~tgi~V~l 84 (504)
+++.+.+ +.+|++.|+++= .. ..+|++|+..|+++.-
T Consensus 50 ~~~~~~~-~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~ 91 (108)
T TIGR03632 50 EDAAKKA-KEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTS 91 (108)
T ss_pred HHHHHHH-HHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 3445566 778999998883 33 5789999999998643
No 56
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=28.98 E-value=1.3e+02 Score=33.21 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCCCEEEE-------cc------CC-------HHHHHHHhcCCCcEEEEeCCCCccc
Q 037583 47 QQVANFLKTQTTIDRVKL-------FD------AN-------PEFLRAFAHTNIPVTVTVGNGDIPA 93 (504)
Q Consensus 47 ~~vv~ll~k~~~i~~VRi-------Y~------~d-------~~vL~A~a~tgi~V~lGV~n~~~~~ 93 (504)
++.+++| +++|++..|+ +- .| ..++.++.+.||+.+|.+.--+++.
T Consensus 74 ~eDi~l~-~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~ 139 (474)
T PRK09852 74 KEDIALM-AEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPM 139 (474)
T ss_pred HHHHHHH-HHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCH
Confidence 6778899 8888776664 31 23 2688999999999999998766554
No 57
>PRK09989 hypothetical protein; Provisional
Probab=28.88 E-value=4.7e+02 Score=25.65 Aligned_cols=120 Identities=12% Similarity=0.132 Sum_probs=65.2
Q ss_pred eeEEecCCCCCCCCHHHHHHHHHhcCCCCEEEEc---cCC-HHHHHHHhcCCCcEEE-EeCCCCcc-------cc-CChH
Q 037583 32 IGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLF---DAN-PEFLRAFAHTNIPVTV-TVGNGDIP-------AL-AKLP 98 (504)
Q Consensus 32 ~GVnYg~~~~nlps~~~vv~ll~k~~~i~~VRiY---~~d-~~vL~A~a~tgi~V~l-GV~n~~~~-------~~-~~~~ 98 (504)
..+|.+..-.++ +-.+.++.+ +..|++.|-+. +.+ .++.+.++++||+|.. +.+..++. .. ....
T Consensus 4 ~~~~~~~~~~~~-~l~~~l~~~-~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK09989 4 FAANLSMMFTEV-PFIERFAAA-RKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREH 81 (258)
T ss_pred eeeehhhhhcCC-CHHHHHHHH-HHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEEeccCCCccCCCCCcccCCCccHH
Confidence 457777766665 467888888 99999999984 334 4677788899999876 32211110 11 1122
Q ss_pred HHHHHHHhhccC--CCCCCeEEEEEeccccccCCCcchHHHHHHHHHHHHHHHHHcCC
Q 037583 99 AAQSWVANNILP--HHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANL 154 (504)
Q Consensus 99 ~A~~Wv~~~v~~--y~p~~~I~~I~VGNEvl~~~~~~~~~~Lv~am~~vk~aL~~~gl 154 (504)
.+.+.+++.+.- .+... ...+..|.-.-..........++..++.+-...++.|.
T Consensus 82 ~~~~~l~~~i~~A~~lg~~-~v~v~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv 138 (258)
T PRK09989 82 EARADIDLALEYALALNCE-QVHVMAGVVPAGEDAERYRAVFIDNLRYAADRFAPHGK 138 (258)
T ss_pred HHHHHHHHHHHHHHHhCcC-EEEECccCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 333334443311 11222 22344553110010122344577777777777777665
No 58
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=28.55 E-value=1.3e+02 Score=33.57 Aligned_cols=76 Identities=14% Similarity=0.259 Sum_probs=49.9
Q ss_pred cCCCCccEEEeeeccCCCCCCCC--C-----CCCHHHHHHHHHHHHHHHhcCCCCCCCCCCcceEEEEecccCC-CCCCC
Q 037583 255 VGYEDVDIVVGETGWPSAGDPNQ--P-----ESNLANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNEN-LKPSI 326 (504)
Q Consensus 255 ~g~~~~~vvVsETGWPS~G~~~~--~-----~as~~Na~~y~~~lv~~~~s~~GTp~rpg~~~~~yiF~~FDE~-wK~~~ 326 (504)
-.|+|.+|+|+|-|-+...+... . ..=.+..+.|++.+.+++.. .|-- ...+|+.++-|-. |. .+
T Consensus 403 ~~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~-dgvn-----v~GYf~WSLmDnfEw~-~G 475 (524)
T KOG0626|consen 403 DKYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKE-DGVN-----VKGYFVWSLLDNFEWL-DG 475 (524)
T ss_pred hhcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHh-cCCc-----eeeEEEeEcccchhhh-cC
Confidence 34789999999999988654321 1 12345566677777777653 2321 2458899999843 43 35
Q ss_pred CCCceeeecCC
Q 037583 327 SEQNFGLFKPD 337 (504)
Q Consensus 327 ~E~~wGlf~~d 337 (504)
..-.|||++.|
T Consensus 476 y~~RFGlyyVD 486 (524)
T KOG0626|consen 476 YKVRFGLYYVD 486 (524)
T ss_pred cccccccEEEe
Confidence 67889999853
No 59
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=27.89 E-value=1.1e+02 Score=27.63 Aligned_cols=40 Identities=25% Similarity=0.343 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCCCCEEEEccCCHHHHHHHhcCCCcEEEEeC
Q 037583 47 QQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVG 87 (504)
Q Consensus 47 ~~vv~ll~k~~~i~~VRiY~~d~~vL~A~a~tgi~V~lGV~ 87 (504)
-++.++| +++|++.|=+...-+..+.+|++.||+|+.+-.
T Consensus 55 ~~~a~~l-~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 55 IRIAELL-VDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHH-HHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 3578899 999999998888889999999999999999876
No 60
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=27.58 E-value=4.9e+02 Score=25.21 Aligned_cols=98 Identities=13% Similarity=0.254 Sum_probs=59.0
Q ss_pred CHHHHHHHHHhcCCCCEEEEc--cCC--HHHHHHHhcCCCcEEEEeCCCCccccCChHHHHHHHHhhccCCCCC-CeEEE
Q 037583 45 PPQQVANFLKTQTTIDRVKLF--DAN--PEFLRAFAHTNIPVTVTVGNGDIPALAKLPAAQSWVANNILPHHPQ-TIFRY 119 (504)
Q Consensus 45 s~~~vv~ll~k~~~i~~VRiY--~~d--~~vL~A~a~tgi~V~lGV~n~~~~~~~~~~~A~~Wv~~~v~~y~p~-~~I~~ 119 (504)
.|++.++.+ +..|.+.|=+= +++ .++++.+++.|+++-|.++... .+ ..+.+|.+. +.|.-
T Consensus 68 ~P~~~i~~~-~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T--~~-----------~~~~~~l~~vD~Vlv 133 (201)
T PF00834_consen 68 NPERYIEEF-AEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPET--PV-----------EELEPYLDQVDMVLV 133 (201)
T ss_dssp SGGGHHHHH-HHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS---G-----------GGGTTTGCCSSEEEE
T ss_pred cHHHHHHHH-HhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCC--Cc-----------hHHHHHhhhcCEEEE
Confidence 467777777 66666655332 122 3788999999999988876432 11 123444433 34444
Q ss_pred EEeccccccCCCcchHHHHHHHHHHHHHHHHHcCCC-ceee
Q 037583 120 IVLGNEILATSDKVLIASLLPAMRTLKSALDAANLS-SVQV 159 (504)
Q Consensus 120 I~VGNEvl~~~~~~~~~~Lv~am~~vk~aL~~~gl~-~IkV 159 (504)
.+| |+=.. ++...+..+..|+.+|+.+.+.|++ .|.|
T Consensus 134 MsV--~PG~~-Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~v 171 (201)
T PF00834_consen 134 MSV--EPGFG-GQKFIPEVLEKIRELRKLIPENGLDFEIEV 171 (201)
T ss_dssp ESS---TTTS-SB--HGGHHHHHHHHHHHHHHHTCGSEEEE
T ss_pred EEe--cCCCC-cccccHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 444 33122 3566778999999999999998876 5554
No 61
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=26.52 E-value=8e+02 Score=27.39 Aligned_cols=144 Identities=15% Similarity=0.172 Sum_probs=69.2
Q ss_pred CCHHHHHHHHH--hcCCCCEEEEccCC---------------HHHHHHHhcCCCc-EEEEeCCCCccccCChHHHHHHHH
Q 037583 44 PPPQQVANFLK--TQTTIDRVKLFDAN---------------PEFLRAFAHTNIP-VTVTVGNGDIPALAKLPAAQSWVA 105 (504)
Q Consensus 44 ps~~~vv~ll~--k~~~i~~VRiY~~d---------------~~vL~A~a~tgi~-V~lGV~n~~~~~~~~~~~A~~Wv~ 105 (504)
-++++|++.++ ...|++.|.+.+.| .++|+++.+.+++ +-++.... ..+. .+- .
T Consensus 241 r~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~~~~i~~ir~~s~~P--~~i~-del-----i 312 (509)
T PRK14327 241 RRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEIRKIDIPRVRFTTSHP--RDFD-DHL-----I 312 (509)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHHHHhCCCceEEEeecCc--ccCC-HHH-----H
Confidence 45677765441 34678888876532 2456666665553 22222211 1121 111 1
Q ss_pred hhccCCCCCCeEEEEEeccccc----cCC--CcchHHHHHHHHHHHHHHHHHcCCCceeeeccccccccccCCCCCcccc
Q 037583 106 NNILPHHPQTIFRYIVLGNEIL----ATS--DKVLIASLLPAMRTLKSALDAANLSSVQVSTPHSLGILSTSEPPSTGRF 179 (504)
Q Consensus 106 ~~v~~y~p~~~I~~I~VGNEvl----~~~--~~~~~~~Lv~am~~vk~aL~~~gl~~IkVsT~~~~~vl~~s~pPS~g~F 179 (504)
+.+... + ..+..+.+|=|-. ++. -..+..+.+.+++.+|+++. .+.++|.. +. .||-
T Consensus 313 ~~m~~~-g-~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~p-----~i~i~tdi----Iv-GfPg----- 375 (509)
T PRK14327 313 EVLAKG-G-NLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAIP-----NVALTTDI----IV-GFPN----- 375 (509)
T ss_pred HHHHhc-C-CccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC-----CcEEeeeE----EE-eCCC-----
Confidence 112221 1 1235666654433 221 12456778888888887642 24444332 21 1431
Q ss_pred cccchhHHHHHHHHHHhhcCCCceecCCCCCCCCCCC
Q 037583 180 RKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQT 216 (504)
Q Consensus 180 ~~~~~~~~i~~~l~fL~~~~d~~~vNiyPyf~~~~i~ 216 (504)
| .+..+...++|+.+. .+-.+++|+|--..+.+
T Consensus 376 --E-T~edf~~Tl~~v~~l-~~d~~~~f~ysprpGT~ 408 (509)
T PRK14327 376 --E-TDEQFEETLSLYREV-GFDHAYTFIYSPREGTP 408 (509)
T ss_pred --C-CHHHHHHHHHHHHHc-CCCeEEEeeeeCCCCCc
Confidence 1 113566778887643 34456777766553333
No 62
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=25.94 E-value=4.5e+02 Score=28.50 Aligned_cols=140 Identities=19% Similarity=0.206 Sum_probs=67.5
Q ss_pred CCHHHHHHHHH--hcCCCCEEEEcc-------CC-------HHHHHHHhcCCCc-EEEEeCCCCccccCChHHHHHHHHh
Q 037583 44 PPPQQVANFLK--TQTTIDRVKLFD-------AN-------PEFLRAFAHTNIP-VTVTVGNGDIPALAKLPAAQSWVAN 106 (504)
Q Consensus 44 ps~~~vv~ll~--k~~~i~~VRiY~-------~d-------~~vL~A~a~tgi~-V~lGV~n~~~~~~~~~~~A~~Wv~~ 106 (504)
-++++|++.++ ...|++.|.+.+ .| .++++.+...|++ +-++..+. ..+ +.+. .+.+++
T Consensus 167 r~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~l~~~~i~~ir~~~~~p--~~i-~~el-l~~l~~ 242 (440)
T PRK14334 167 RHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRLVGASGIPRVKFTTSHP--MNF-TDDV-IAAMAE 242 (440)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHHHHhcCCcEEEEccCCc--ccC-CHHH-HHHHHh
Confidence 45778776541 345777777643 22 2567777666653 33332211 112 1121 222222
Q ss_pred hccCCCCCCeEEEEEecccccc----C--CCcchHHHHHHHHHHHHHHHHHcCCCceeeeccccccccccCCCCCccccc
Q 037583 107 NILPHHPQTIFRYIVLGNEILA----T--SDKVLIASLLPAMRTLKSALDAANLSSVQVSTPHSLGILSTSEPPSTGRFR 180 (504)
Q Consensus 107 ~v~~y~p~~~I~~I~VGNEvl~----~--~~~~~~~~Lv~am~~vk~aL~~~gl~~IkVsT~~~~~vl~~s~pPS~g~F~ 180 (504)
. + ..+..+.+|=|-.. + +...+.++++.+++.+|++. . .+.+++.. +. .+|-
T Consensus 243 ----~-~-~g~~~l~igvQSgs~~vLk~m~R~~~~~~~~~~v~~lr~~~----~-~i~i~~d~----Iv-G~Pg------ 300 (440)
T PRK14334 243 ----T-P-AVCEYIHLPVQSGSDRVLRRMAREYRREKYLERIAEIREAL----P-DVVLSTDI----IV-GFPG------ 300 (440)
T ss_pred ----c-C-cCCCeEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHhC----C-CcEEEEeE----EE-ECCC------
Confidence 1 1 12455666544332 1 11245667777777777653 2 23333332 11 1331
Q ss_pred ccchhHHHHHHHHHHhhcCCCceecCCCCCCC
Q 037583 181 KGYDRLIFARILEFHRQTKSPFMVNPYPYFGF 212 (504)
Q Consensus 181 ~~~~~~~i~~~l~fL~~~~d~~~vNiyPyf~~ 212 (504)
+ ....+.+.++|+.+. .+-.+++|+|--.
T Consensus 301 -E-t~ed~~~tl~~i~~l-~~~~i~~f~ysp~ 329 (440)
T PRK14334 301 -E-TEEDFQETLSLYDEV-GYDSAYMFIYSPR 329 (440)
T ss_pred -C-CHHHHHHHHHHHHhc-CCCEeeeeEeeCC
Confidence 1 113566788888653 3556777776544
No 63
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=25.82 E-value=1.3e+02 Score=31.19 Aligned_cols=82 Identities=10% Similarity=0.111 Sum_probs=50.6
Q ss_pred CeEEEEEecccccc--C--C---CcchHHHHHHHHHHHHHHHHHcCCCceeeeccccccccccCCCCCcc----cccccc
Q 037583 115 TIFRYIVLGNEILA--T--S---DKVLIASLLPAMRTLKSALDAANLSSVQVSTPHSLGILSTSEPPSTG----RFRKGY 183 (504)
Q Consensus 115 ~~I~~I~VGNEvl~--~--~---~~~~~~~Lv~am~~vk~aL~~~gl~~IkVsT~~~~~vl~~s~pPS~g----~F~~~~ 183 (504)
..|..++||.|-.- + . ..-.+..|..-+.+||+.| |- .+|||++..|+.+.. +.|..| .|+-|
T Consensus 18 ggVdaF~IGSEl~gLT~iR~~~~~fPaV~~l~~LAa~VR~il---G~-~~kitYAADWsEY~~-~~p~dg~gd~~f~LD- 91 (299)
T PF13547_consen 18 GGVDAFCIGSELRGLTRIRDGAGSFPAVEALRALAADVRAIL---GP-GTKITYAADWSEYFG-YQPADGSGDVYFHLD- 91 (299)
T ss_pred CCCcEEEEchhhhhheeecCCCCCCcHHHHHHHHHHHHHHHh---CC-CceEEEeccCHHhcC-cCCCCCCCcccccCc-
Confidence 56899999999632 2 1 1123467888888888877 22 589999999987765 444443 34321
Q ss_pred hhHHHHHHHHHHhhcCCCceecCCCCC
Q 037583 184 DRLIFARILEFHRQTKSPFMVNPYPYF 210 (504)
Q Consensus 184 ~~~~i~~~l~fL~~~~d~~~vNiyPyf 210 (504)
|+. -...-|+++|+-|.=.
T Consensus 92 ------pLW--a~~~IDfIGID~Y~PL 110 (299)
T PF13547_consen 92 ------PLW--ADPNIDFIGIDNYFPL 110 (299)
T ss_pred ------ccc--cCCcCCEEEeeccccc
Confidence 111 1135677777776433
No 64
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=25.67 E-value=2.3e+02 Score=31.12 Aligned_cols=47 Identities=13% Similarity=0.219 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCCCCEEEE-------cc-----CC-------HHHHHHHhcCCCcEEEEeCCCCccc
Q 037583 46 PQQVANFLKTQTTIDRVKL-------FD-----AN-------PEFLRAFAHTNIPVTVTVGNGDIPA 93 (504)
Q Consensus 46 ~~~vv~ll~k~~~i~~VRi-------Y~-----~d-------~~vL~A~a~tgi~V~lGV~n~~~~~ 93 (504)
-++.++|| +++|++.-|+ +- .| .+++..|.+.||+-+|.+.--+++.
T Consensus 55 y~eDi~L~-~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 120 (467)
T TIGR01233 55 YPVDLELA-EEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPE 120 (467)
T ss_pred HHHHHHHH-HHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcH
Confidence 36788999 8888776654 31 13 2688999999999999998766553
No 65
>PLN00196 alpha-amylase; Provisional
Probab=25.33 E-value=1.6e+02 Score=32.16 Aligned_cols=56 Identities=18% Similarity=0.280 Sum_probs=36.3
Q ss_pred eeEEecCCCCC---CCCHHHHHHHHHhcCCCCEE-----------------EEccCCH----------HHHHHHhcCCCc
Q 037583 32 IGVNYGAIANN---LPPPQQVANFLKTQTTIDRV-----------------KLFDANP----------EFLRAFAHTNIP 81 (504)
Q Consensus 32 ~GVnYg~~~~n---lps~~~vv~ll~k~~~i~~V-----------------RiY~~d~----------~vL~A~a~tgi~ 81 (504)
-|++|-....+ ..--.+-++.| |++||+.| +.|+.|+ ++++++.+.||+
T Consensus 29 Q~F~W~~~~~~gg~~~~i~~kldyL-~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIk 107 (428)
T PLN00196 29 QGFNWESWKQNGGWYNFLMGKVDDI-AAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQ 107 (428)
T ss_pred EeeccCCCCCCCcCHHHHHHHHHHH-HHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCE
Confidence 58887543222 11223345677 88888877 4455541 567888899999
Q ss_pred EEEEeCC
Q 037583 82 VTVTVGN 88 (504)
Q Consensus 82 V~lGV~n 88 (504)
|++.+-.
T Consensus 108 VilDvV~ 114 (428)
T PLN00196 108 VIADIVI 114 (428)
T ss_pred EEEEECc
Confidence 9998753
No 66
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=25.15 E-value=3.8e+02 Score=27.87 Aligned_cols=74 Identities=14% Similarity=0.194 Sum_probs=38.2
Q ss_pred CCCcEEEEeCC--CC---cccc-CChHHHHHHHHhhccCCCCCCeEEEEEeccccccC--CCcchHHHHHHHHHHHHHHH
Q 037583 78 TNIPVTVTVGN--GD---IPAL-AKLPAAQSWVANNILPHHPQTIFRYIVLGNEILAT--SDKVLIASLLPAMRTLKSAL 149 (504)
Q Consensus 78 tgi~V~lGV~n--~~---~~~~-~~~~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~--~~~~~~~~Lv~am~~vk~aL 149 (504)
.++||++.|-. .. ...+ +++......+++.+ .+....++.+|-+==|-... ........++..|+.+|++|
T Consensus 69 p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~~iv-~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~l 147 (362)
T cd02872 69 PNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIKSAI-AFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREAF 147 (362)
T ss_pred CCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHHHHH-HHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 58999987742 21 2233 44433333333222 22111234455443332221 11234567889999999999
Q ss_pred HHc
Q 037583 150 DAA 152 (504)
Q Consensus 150 ~~~ 152 (504)
++.
T Consensus 148 ~~~ 150 (362)
T cd02872 148 EPE 150 (362)
T ss_pred Hhh
Confidence 987
No 67
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=25.04 E-value=87 Score=34.12 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcee
Q 037583 135 IASLLPAMRTLKSALDAANLSSVQ 158 (504)
Q Consensus 135 ~~~Lv~am~~vk~aL~~~gl~~Ik 158 (504)
....+.-++.+.+.|.++||.++.
T Consensus 262 ~~~~~~~~~~~~~~L~~~Gy~~~~ 285 (453)
T PRK13347 262 AEERLRQARAVADRLLAAGYVPIG 285 (453)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEe
Confidence 345667777888999999996443
No 68
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.74 E-value=4.8e+02 Score=28.24 Aligned_cols=61 Identities=15% Similarity=0.122 Sum_probs=34.4
Q ss_pred chHHHHHHHHHHHHHHHHHcCCCceeeeccccccccccCCCCCcccccccchhHHHHHHHHHHhhcCCCceecCCCCCCC
Q 037583 133 VLIASLLPAMRTLKSALDAANLSSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGF 212 (504)
Q Consensus 133 ~~~~~Lv~am~~vk~aL~~~gl~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~i~~~l~fL~~~~d~~~vNiyPyf~~ 212 (504)
.+......+++.+|+.+. .+.+++.. +. .||- | .+..+...++|+.+. .+-.+++++|-..
T Consensus 279 ~~~~~~~~~i~~lr~~~~-----~i~i~~d~----Iv-G~Pg-------E-T~ed~~~tl~~i~~l-~~~~~~~~~~sp~ 339 (439)
T PRK14328 279 YTREYYLELVEKIKSNIP-----DVAITTDI----IV-GFPG-------E-TEEDFEETLDLVKEV-RYDSAFTFIYSKR 339 (439)
T ss_pred CCHHHHHHHHHHHHHhCC-----CCEEEEEE----EE-ECCC-------C-CHHHHHHHHHHHHhc-CCCcccceEecCC
Confidence 456777888888777532 23343322 21 1331 1 113566788888654 3556788877665
No 69
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=24.61 E-value=4e+02 Score=28.01 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=48.5
Q ss_pred CCceeEEecCCCCCCCCHHHHHHHHHhcCCCCEEEEccCCHHHHHHHhcCCCcEEEEeCCCCccccCChHHHHHHHHhhc
Q 037583 29 ADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPAAQSWVANNI 108 (504)
Q Consensus 29 ~~~~GVnYg~~~~nlps~~~vv~ll~k~~~i~~VRiY~~d~~vL~A~a~tgi~V~lGV~n~~~~~~~~~~~A~~Wv~~~v 108 (504)
...+|||.-....+ +..++.++.+ ...+.+.|=+..-+|...+.+++.||+|+.-|+. ...|..+.+..+
T Consensus 55 dkPfGVnl~~~~~~-~~~~~~l~vi-~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~s--------~~~A~~a~~~Ga 124 (320)
T cd04743 55 DKPWGVGILGFVDT-ELRAAQLAVV-RAIKPTFALIAGGRPDQARALEAIGISTYLHVPS--------PGLLKQFLENGA 124 (320)
T ss_pred CCCeEEEEeccCCC-cchHHHHHHH-HhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeCC--------HHHHHHHHHcCC
Confidence 34678877443322 3345566666 5556777766555566678888999999977763 244444444321
Q ss_pred cCCCCCCeEEEEEecccc
Q 037583 109 LPHHPQTIFRYIVLGNEI 126 (504)
Q Consensus 109 ~~y~p~~~I~~I~VGNEv 126 (504)
+ .-|+-|.|.
T Consensus 125 ------D--~vVaqG~EA 134 (320)
T cd04743 125 ------R--KFIFEGREC 134 (320)
T ss_pred ------C--EEEEecCcC
Confidence 2 346678887
No 70
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=24.22 E-value=1.6e+02 Score=31.02 Aligned_cols=76 Identities=21% Similarity=0.096 Sum_probs=50.6
Q ss_pred HHHHHHHhcCCCcEEEEeCCCCccccCChHHHHHHHHhhccCCCCCCeEEEEEeccccccCCCcchHHHHHHHHHHHHHH
Q 037583 69 PEFLRAFAHTNIPVTVTVGNGDIPALAKLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSA 148 (504)
Q Consensus 69 ~~vL~A~a~tgi~V~lGV~n~~~~~~~~~~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~~~~~~~~Lv~am~~vk~a 148 (504)
..||+++.+.|-.+.+|=. ..+.+ +++.|..|+.+.+..++ ++|.+|+.-|.-+.. .+ -++
T Consensus 175 m~VLkp~idsGkik~~Ge~--~~d~W-~ps~Aq~~men~lta~~--~~vdaVvA~nDgtag----------Ga----I~a 235 (341)
T COG4213 175 MKVLKPLIDSGKIKVVGEQ--WTDGW-LPSNAQQIMENLLTANY--NDIDAVVAPNDGTAG----------GA----IAA 235 (341)
T ss_pred HHHHHHHhhCCceEEeeec--ccccc-CHHHHHHHHHHHHhccc--CceeEEEcCCCchhH----------HH----HHH
Confidence 3789988888844446633 22233 46788999999888875 459998887753322 11 246
Q ss_pred HHHcCCC-ceeeeccc
Q 037583 149 LDAANLS-SVQVSTPH 163 (504)
Q Consensus 149 L~~~gl~-~IkVsT~~ 163 (504)
|++.||+ +++||=-+
T Consensus 236 L~a~Gl~g~vpVsGQD 251 (341)
T COG4213 236 LKAQGLAGKVPVSGQD 251 (341)
T ss_pred HHhcccCCCCcccCcc
Confidence 8889998 88866443
No 71
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.42 E-value=7e+02 Score=24.36 Aligned_cols=88 Identities=20% Similarity=0.342 Sum_probs=55.3
Q ss_pred CHHHHHHHHHhcCCCCEEEEccCC---HHHHHHHhc--CCCcEEEEeCCCCccccCChHHHHHHHHhhccCCCCCCeEEE
Q 037583 45 PPQQVANFLKTQTTIDRVKLFDAN---PEFLRAFAH--TNIPVTVTVGNGDIPALAKLPAAQSWVANNILPHHPQTIFRY 119 (504)
Q Consensus 45 s~~~vv~ll~k~~~i~~VRiY~~d---~~vL~A~a~--tgi~V~lGV~n~~~~~~~~~~~A~~Wv~~~v~~y~p~~~I~~ 119 (504)
+++|+.+.+ + .|.+.|++|-++ ++-++++++ .+++++. ..++ +.+++.+|++. .+.+
T Consensus 118 T~~E~~~A~-~-~Gad~vklFPa~~~G~~~ik~l~~~~p~ip~~a---tGGI----~~~N~~~~l~a---------Ga~~ 179 (213)
T PRK06552 118 TVTEIVTAL-E-AGSEIVKLFPGSTLGPSFIKAIKGPLPQVNVMV---TGGV----NLDNVKDWFAA---------GADA 179 (213)
T ss_pred CHHHHHHHH-H-cCCCEEEECCcccCCHHHHHHHhhhCCCCEEEE---ECCC----CHHHHHHHHHC---------CCcE
Confidence 678887766 3 689999999655 566777764 2355442 1122 23566777764 3578
Q ss_pred EEeccccccCCCcchHHHHHHHHHHHHHHHH
Q 037583 120 IVLGNEILATSDKVLIASLLPAMRTLKSALD 150 (504)
Q Consensus 120 I~VGNEvl~~~~~~~~~~Lv~am~~vk~aL~ 150 (504)
+.||...+.......++.+-...+++++.++
T Consensus 180 vavgs~l~~~~~~~~~~~i~~~a~~~~~~~~ 210 (213)
T PRK06552 180 VGIGGELNKLASQGDFDLITEKAKKYMSSLR 210 (213)
T ss_pred EEEchHHhCccccCCHHHHHHHHHHHHHHHH
Confidence 8899887643222345566667777766654
No 72
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=23.29 E-value=1.3e+02 Score=29.19 Aligned_cols=39 Identities=23% Similarity=0.283 Sum_probs=34.5
Q ss_pred HHHHHhcCCCCEEEEccCCHHHHHHHhcCCCcEEEEeCCC
Q 037583 50 ANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNG 89 (504)
Q Consensus 50 v~ll~k~~~i~~VRiY~~d~~vL~A~a~tgi~V~lGV~n~ 89 (504)
.|.| +.+||+.||+-..+|.=..++.+.||+|.=-+++.
T Consensus 133 AqIL-~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~~ 171 (193)
T COG0807 133 AQIL-KDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLI 171 (193)
T ss_pred HHHH-HHcCCcEEEEecCChHHHHHHHhCCceEEEEeecC
Confidence 5677 88899999999999988999999999998888764
No 73
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=22.61 E-value=4e+02 Score=24.89 Aligned_cols=80 Identities=16% Similarity=0.105 Sum_probs=44.7
Q ss_pred EEEEc-----cCCHHHHHHHhcCCCcEEEEeCCCCcccc--CChHHHHHHHHhhccCCCCCCeEEEEEeccccccCCCcc
Q 037583 61 RVKLF-----DANPEFLRAFAHTNIPVTVTVGNGDIPAL--AKLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKV 133 (504)
Q Consensus 61 ~VRiY-----~~d~~vL~A~a~tgi~V~lGV~n~~~~~~--~~~~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~~~~ 133 (504)
..|.| ..++.+++++++.|++++. |+-+..+. .+.+...+.+.+++. ++ .|....-| .
T Consensus 97 ~~~~fr~P~G~~~~~~~~~l~~~G~~~v~--w~~~~~D~~~~~~~~i~~~~~~~~~---~g-~Iil~Hd~---------~ 161 (191)
T TIGR02764 97 KPTLFRPPSGAFNKAVLKAAESLGYTVVH--WSVDSRDWKNPGVESIVDRVVKNTK---PG-DIILLHAS---------D 161 (191)
T ss_pred CCCEEECCCcCCCHHHHHHHHHcCCeEEE--ecCCCCccCCCCHHHHHHHHHhcCC---CC-CEEEEeCC---------C
Confidence 45555 3458899999999999765 54333333 233332233333332 22 23322221 1
Q ss_pred hHHHHHHHHHHHHHHHHHcCCC
Q 037583 134 LIASLLPAMRTLKSALDAANLS 155 (504)
Q Consensus 134 ~~~~Lv~am~~vk~aL~~~gl~ 155 (504)
.....+.++..+-..|++.||.
T Consensus 162 ~~~~t~~~l~~~i~~l~~~Gy~ 183 (191)
T TIGR02764 162 SAKQTVKALPTIIKKLKEKGYE 183 (191)
T ss_pred CcHhHHHHHHHHHHHHHHCCCE
Confidence 2334567778888889999985
No 74
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=22.57 E-value=1.6e+02 Score=26.21 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCCCEEEEc--c--------CC---HHHHHHHhcCCCcEEE
Q 037583 47 QQVANFLKTQTTIDRVKLF--D--------AN---PEFLRAFAHTNIPVTV 84 (504)
Q Consensus 47 ~~vv~ll~k~~~i~~VRiY--~--------~d---~~vL~A~a~tgi~V~l 84 (504)
+++.+.. +++|++.|+++ + .- ...|++|+..||+|..
T Consensus 53 ~~~~~~~-~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~ 102 (114)
T TIGR03628 53 GRAAEKA-KERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 102 (114)
T ss_pred HHHHHHH-HHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEE
Confidence 4455566 78899988777 3 22 4789999999999753
No 75
>PRK07198 hypothetical protein; Validated
Probab=22.09 E-value=68 Score=34.60 Aligned_cols=37 Identities=22% Similarity=0.215 Sum_probs=32.3
Q ss_pred HHHHHhcCCCCEE-EEccCCHHHHHHHhcCCCcEEEEeC
Q 037583 50 ANFLKTQTTIDRV-KLFDANPEFLRAFAHTNIPVTVTVG 87 (504)
Q Consensus 50 v~ll~k~~~i~~V-RiY~~d~~vL~A~a~tgi~V~lGV~ 87 (504)
.|.| +.+|+++| |+.+.++.-+.++.+.||+|.==++
T Consensus 338 AQIL-rdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVp 375 (418)
T PRK07198 338 PDVL-HWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVP 375 (418)
T ss_pred HHHH-HHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEec
Confidence 5677 88899999 9999999889999999999985554
No 76
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=21.85 E-value=1.4e+02 Score=26.13 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCCEEEEc--cCC---HHHHHHHhcCCCcEEE
Q 037583 48 QVANFLKTQTTIDRVKLF--DAN---PEFLRAFAHTNIPVTV 84 (504)
Q Consensus 48 ~vv~ll~k~~~i~~VRiY--~~d---~~vL~A~a~tgi~V~l 84 (504)
.+.+.+ +.+|++.|+++ +.. ..+|++|+.+|++|..
T Consensus 51 ~~~~~~-~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 51 KIAKKA-KELGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHHH-HCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHH-HHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 344566 77899988888 333 4789999999998653
No 77
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=21.69 E-value=2.8e+02 Score=32.90 Aligned_cols=96 Identities=15% Similarity=0.067 Sum_probs=57.9
Q ss_pred eeEEecCCCCCC---CCH---HHHHHHHHhcCCCCEEEEccC--CHHHHHHHhcCCCcEEEEeCCCC--cccc-CChHHH
Q 037583 32 IGVNYGAIANNL---PPP---QQVANFLKTQTTIDRVKLFDA--NPEFLRAFAHTNIPVTVTVGNGD--IPAL-AKLPAA 100 (504)
Q Consensus 32 ~GVnYg~~~~nl---ps~---~~vv~ll~k~~~i~~VRiY~~--d~~vL~A~a~tgi~V~lGV~n~~--~~~~-~~~~~A 100 (504)
.|+|.-....-+ ... .+.++++ |..+++.||+..- ++.-++.+...||-|+--..... ...- .-.+.+
T Consensus 303 kGvnrHe~~~~~G~~~~~~~~~~dl~lm-k~~n~N~vRtsHyP~~~~~ydLcDelGllV~~Ea~~~~~~~~~~~~~~k~~ 381 (808)
T COG3250 303 RGVNRHEDDPILGRVTDEDAMERDLKLM-KEANMNSVRTSHYPNSEEFYDLCDELGLLVIDEAMIETHGMPDDPEWRKEV 381 (808)
T ss_pred eeeecccCCCccccccCHHHHHHHHHHH-HHcCCCEEEecCCCCCHHHHHHHHHhCcEEEEecchhhcCCCCCcchhHHH
Confidence 477776543221 223 3445566 7899999999843 47888999999999987655421 1111 112333
Q ss_pred HHHHHhhccCCCCCCeEEEEEecccccc
Q 037583 101 QSWVANNILPHHPQTIFRYIVLGNEILA 128 (504)
Q Consensus 101 ~~Wv~~~v~~y~p~~~I~~I~VGNEvl~ 128 (504)
..-+++.|.+.--.-.|.-=++|||.-.
T Consensus 382 ~~~i~~mver~knHPSIiiWs~gNE~~~ 409 (808)
T COG3250 382 SEEVRRMVERDRNHPSIIIWSLGNESGH 409 (808)
T ss_pred HHHHHHHHHhccCCCcEEEEeccccccC
Confidence 4445555544321224888899999743
No 78
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=21.55 E-value=1.5e+02 Score=30.77 Aligned_cols=221 Identities=14% Similarity=0.165 Sum_probs=110.2
Q ss_pred HHHHHHhcCCCcEE--EEeCCCCcccc--C----C-------hHHHHHHHHhhccCCCCC-CeEEEEEeccccccCCC--
Q 037583 70 EFLRAFAHTNIPVT--VTVGNGDIPAL--A----K-------LPAAQSWVANNILPHHPQ-TIFRYIVLGNEILATSD-- 131 (504)
Q Consensus 70 ~vL~A~a~tgi~V~--lGV~n~~~~~~--~----~-------~~~A~~Wv~~~v~~y~p~-~~I~~I~VGNEvl~~~~-- 131 (504)
.++.-++..||+|- .=||-...+.. . + .+...+++++.+..| .+ .+|...=|=||++..+.
T Consensus 63 ~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y-~~~g~i~~WDVvNE~i~~~~~~ 141 (320)
T PF00331_consen 63 AILDWARENGIKVRGHTLVWHSQTPDWVFNLANGSPDEKEELRARLENHIKTVVTRY-KDKGRIYAWDVVNEAIDDDGNP 141 (320)
T ss_dssp HHHHHHHHTT-EEEEEEEEESSSS-HHHHTSTTSSBHHHHHHHHHHHHHHHHHHHHT-TTTTTESEEEEEES-B-TTSSS
T ss_pred HHHHHHHhcCcceeeeeEEEcccccceeeeccCCCcccHHHHHHHHHHHHHHHHhHh-ccccceEEEEEeeecccCCCcc
Confidence 56677778888873 34565444432 1 1 233445666655555 43 47999999999998642
Q ss_pred ----cch------HHHHHHHHHHHHHHHHHcCCCceeeeccccccccccCCCCCcccccccchhHHHHHHHHHHhhcCCC
Q 037583 132 ----KVL------IASLLPAMRTLKSALDAANLSSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSP 201 (504)
Q Consensus 132 ----~~~------~~~Lv~am~~vk~aL~~~gl~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~i~~~l~fL~~~~d~ 201 (504)
... ...+..+.+-.|++...+.| -.-+ .+++. + .-. ..+..+++.|.+.+-|
T Consensus 142 ~~~r~~~~~~~lG~~yi~~aF~~A~~~~P~a~L-----~~ND-y~~~~----~-------~k~-~~~~~lv~~l~~~gvp 203 (320)
T PF00331_consen 142 GGLRDSPWYDALGPDYIADAFRAAREADPNAKL-----FYND-YNIES----P-------AKR-DAYLNLVKDLKARGVP 203 (320)
T ss_dssp SSBCTSHHHHHHTTCHHHHHHHHHHHHHTTSEE-----EEEE-SSTTS----T-------HHH-HHHHHHHHHHHHTTHC
T ss_pred ccccCChhhhcccHhHHHHHHHHHHHhCCCcEE-----Eecc-ccccc----h-------HHH-HHHHHHHHHHHhCCCc
Confidence 011 23455566667766653322 2111 12211 1 001 2455677777655433
Q ss_pred ceecCCCCCCCCCCCccccccCCCCceecCCCCccccchHHHHHHHHHHHHHHcCCCCccEEEeeeccCCCCCCCCCCCC
Q 037583 202 FMVNPYPYFGFKPQTLNYALFKPNAGVFDPATGKNYTNMFDAQLDAVYSAMKKVGYEDVDIVVGETGWPSAGDPNQPESN 281 (504)
Q Consensus 202 ~~vNiyPyf~~~~i~~d~A~f~~~~~~~d~~~~~~Y~n~fda~~Dav~~a~~k~g~~~~~vvVsETGWPS~G~~~~~~as 281 (504)
+|--=+| ++.... +. .+.+...|+++.--+++|.|||.-=........ ...
T Consensus 204 ---------------IdgIG~Q---~H~~~~----~~------~~~i~~~l~~~~~~Gl~i~ITElDv~~~~~~~~-~~~ 254 (320)
T PF00331_consen 204 ---------------IDGIGLQ---SHFDAG----YP------PEQIWNALDRFASLGLPIHITELDVRDDDNPPD-AEE 254 (320)
T ss_dssp ---------------S-EEEEE---EEEETT----SS------HHHHHHHHHHHHTTTSEEEEEEEEEESSSTTSC-HHH
T ss_pred ---------------cceechh---hccCCC----CC------HHHHHHHHHHHHHcCCceEEEeeeecCCCCCcc-hHH
Confidence 2211111 111110 11 333444555554457999999986443322110 233
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCcceEEEEecccCC-CCCCCCCCceeeecCCCceeee
Q 037583 282 LANALSYNGNLVKHVNSGKGTPLMPNRTFEVYIFALFNEN-LKPSISEQNFGLFKPDFTPVYD 343 (504)
Q Consensus 282 ~~Na~~y~~~lv~~~~s~~GTp~rpg~~~~~yiF~~FDE~-wK~~~~E~~wGlf~~d~~~ky~ 343 (504)
.+.++.+++++++.+.+.. |..-..+.+..+.|.. |.+...-.+=+||+.|.+||..
T Consensus 255 ~~~qA~~~~~~~~~~~~~~-----~~~v~git~Wg~~D~~sW~~~~~~~~~~lfd~~~~~Kpa 312 (320)
T PF00331_consen 255 EEAQAEYYRDFLTACFSHP-----PAAVEGITWWGFTDGYSWRPDTPPDRPLLFDEDYQPKPA 312 (320)
T ss_dssp HHHHHHHHHHHHHHHHHTT-----HCTEEEEEESSSBTTGSTTGGHSEG--SSB-TTSBB-HH
T ss_pred HHHHHHHHHHHHHHHHhCC-----ccCCCEEEEECCCCCCcccCCCCCCCCeeECCCcCCCHH
Confidence 6678889999999887631 0012334555666654 6551112334688888888754
No 79
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=21.43 E-value=1.9e+02 Score=27.10 Aligned_cols=84 Identities=19% Similarity=0.252 Sum_probs=45.8
Q ss_pred HHHHHHhcC--CCcEEEEeCCCCccc---c-CChHHHHHHHHhhccCCCCCCeEEEEEeccccccCCCcchHHHHHHHHH
Q 037583 70 EFLRAFAHT--NIPVTVTVGNGDIPA---L-AKLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMR 143 (504)
Q Consensus 70 ~vL~A~a~t--gi~V~lGV~n~~~~~---~-~~~~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~~~~~~~~Lv~am~ 143 (504)
..++.+++. |+||++.|....... + .+++...+.+++ +..+....++.+|-+==|-....+......++..|+
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~-~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~ 131 (210)
T cd00598 53 GALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFANS-LVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLR 131 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHH-HHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHH
Confidence 445666655 999999888643221 2 343333332222 222222224556655444432211113577999999
Q ss_pred HHHHHHHHcCC
Q 037583 144 TLKSALDAANL 154 (504)
Q Consensus 144 ~vk~aL~~~gl 154 (504)
.+|++|.+.++
T Consensus 132 ~lr~~l~~~~~ 142 (210)
T cd00598 132 ELRSALGAANY 142 (210)
T ss_pred HHHHHhcccCc
Confidence 99999987665
No 80
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=21.14 E-value=7.8e+02 Score=24.05 Aligned_cols=118 Identities=15% Similarity=0.133 Sum_probs=62.3
Q ss_pred EEecCCCCCCCCHHHHHHHHHhcCCCCEEEEccC---C-HHHHHHHhcCCCcEEE-EeCCCCcc------cc--CChHHH
Q 037583 34 VNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDA---N-PEFLRAFAHTNIPVTV-TVGNGDIP------AL--AKLPAA 100 (504)
Q Consensus 34 VnYg~~~~nlps~~~vv~ll~k~~~i~~VRiY~~---d-~~vL~A~a~tgi~V~l-GV~n~~~~------~~--~~~~~A 100 (504)
+|.+..-.++| .++.++.+ +..|++.|-++.. + .++.+.++++||++.. +++..+.. .+ ...+..
T Consensus 6 ~~~~~~~~~~~-l~~~l~~~-a~~Gf~~VEl~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (258)
T PRK09997 6 ANLSMLFGEYD-FLARFEKA-AQCGFRGVEFMFPYDYDIEELKQVLASNKLEHTLHNLPAGDWAAGERGIACIPGREEEF 83 (258)
T ss_pred eeeehhccCCC-HHHHHHHH-HHhCCCEEEEcCCCCCCHHHHHHHHHHcCCcEEEEcCCCCccccCcCccccCCCcHHHH
Confidence 44444444443 67788888 8899999998753 3 3677788899999975 33332211 01 112222
Q ss_pred HHHHHhhcc--CCCCCCeEEEEEeccccccCCCcchHHHHHHHHHHHHHHHHHcCC
Q 037583 101 QSWVANNIL--PHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANL 154 (504)
Q Consensus 101 ~~Wv~~~v~--~y~p~~~I~~I~VGNEvl~~~~~~~~~~Lv~am~~vk~aL~~~gl 154 (504)
.+.+++.+. ..+....| .+..|.-.-..........+...++.+-...++.|+
T Consensus 84 ~~~~~~~i~~a~~lga~~i-~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv 138 (258)
T PRK09997 84 RDGVAAAIRYARALGNKKI-NCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDI 138 (258)
T ss_pred HHHHHHHHHHHHHhCCCEE-EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 333333331 11222233 344554110000122345667777777666677665
No 81
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=21.08 E-value=9e+02 Score=26.01 Aligned_cols=80 Identities=11% Similarity=0.057 Sum_probs=44.0
Q ss_pred EEEEEeccccccCC------CcchHHHHHHHHHHHHHHHHHcCCCceeeeccccccccccCCCCCcccccccchhHHHHH
Q 037583 117 FRYIVLGNEILATS------DKVLIASLLPAMRTLKSALDAANLSSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFAR 190 (504)
Q Consensus 117 I~~I~VGNEvl~~~------~~~~~~~Lv~am~~vk~aL~~~gl~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~i~~ 190 (504)
...+.+|=|-.... ...+..+...+++.+|+.+. .+.|++..-. .||- | .+..+..
T Consensus 250 ~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~-----~i~i~~d~Iv-----GfPg-------E-T~edf~~ 311 (434)
T PRK14330 250 AKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKVP-----DASISSDIIV-----GFPT-------E-TEEDFME 311 (434)
T ss_pred cCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC-----CCEEEEEEEE-----ECCC-------C-CHHHHHH
Confidence 45677766654321 12356677777777777532 2445444221 1331 2 1235677
Q ss_pred HHHHHhhcCCCceecCCCCCCCCCC
Q 037583 191 ILEFHRQTKSPFMVNPYPYFGFKPQ 215 (504)
Q Consensus 191 ~l~fL~~~~d~~~vNiyPyf~~~~i 215 (504)
.++|+.+. .+-.+|+++|-.+.+.
T Consensus 312 tl~fi~~~-~~~~~~~~~~sp~pGT 335 (434)
T PRK14330 312 TVDLVEKA-QFERLNLAIYSPREGT 335 (434)
T ss_pred HHHHHHhc-CCCEEeeeeccCCCCC
Confidence 88888754 3556777777766333
No 82
>CHL00041 rps11 ribosomal protein S11
Probab=20.29 E-value=2e+02 Score=25.57 Aligned_cols=35 Identities=11% Similarity=0.238 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCCCEEEEcc--CC---HHHHHHHhcCCCcEE
Q 037583 48 QVANFLKTQTTIDRVKLFD--AN---PEFLRAFAHTNIPVT 83 (504)
Q Consensus 48 ~vv~ll~k~~~i~~VRiY~--~d---~~vL~A~a~tgi~V~ 83 (504)
++.+.+ +++|++.|+++= .. ..++++|+..|++|.
T Consensus 64 ~~~~~~-~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~ 103 (116)
T CHL00041 64 NAIRTV-IDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLS 103 (116)
T ss_pred HHHHHH-HHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 344556 778999888873 32 578999999999864
Done!