BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037584
(114 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EQK|A Chain A, Solution Structure Of Oryzacystatin-I, A Cysteine
Proteinase Inhibitor Of The Rice, Oryza Sativa L.
Japonica
Length = 102
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 27 LVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAAQ 86
++GG +P+ + ND H++++ +FAV E+NK++ L+F+ + + QVV+GT Y + +
Sbjct: 8 VLGGVEPVGNENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIEVK 67
Query: 87 DGTATNKYQAVVWENA-KQIKKLTSF 111
+G A Y+A VWE K+L F
Sbjct: 68 EGDAKKLYEAKVWEKPWMDFKELQEF 93
>pdb|3UL5|A Chain A, Saccharum Officinarum Canecystatin-1 In Space Group C2221
pdb|3UL5|B Chain B, Saccharum Officinarum Canecystatin-1 In Space Group C2221
pdb|3UL5|C Chain C, Saccharum Officinarum Canecystatin-1 In Space Group C2221
pdb|3UL5|D Chain D, Saccharum Officinarum Canecystatin-1 In Space Group C2221
pdb|3UL6|A Chain A, Saccharum Officinarum Canecystatin-1 In Space Group P6422
pdb|3UL6|B Chain B, Saccharum Officinarum Canecystatin-1 In Space Group P6422
Length = 139
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 33 PIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAAQDGTATN 92
P ND IE+ +FAV E+N ++ L+F+ + K QVV+GT + V ++
Sbjct: 53 PAGHENDLEAIELARFAVAEHNSKTNAMLEFERLVKVRHQVVAGTMHHFTVQVKEAGGGK 112
Query: 93 K-YQAVVWENA-KQIKKLTSF 111
K Y+A VWE + K+L SF
Sbjct: 113 KLYEAKVWEKVWENFKQLQSF 133
>pdb|3IMA|B Chain B, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|D Chain D, Complex Strcuture Of Tarocystatin And Papain
Length = 91
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 26 ALVGGWKPIEDP-NDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVA 84
AL+GG +E N V E+ +FAV E+NK+ L+F + K + QVVSG + L V
Sbjct: 1 ALMGGIVDVEGAQNSAEVEELARFAVDEHNKKENALLQFSRLVKAKQQVVSGIMHHLTVE 60
Query: 85 AQDGTATNKYQAVVWENA-KQIKKLTSF 111
+G Y+A VW A KKL F
Sbjct: 61 VIEGGKKKVYEAKVWVQAWLNSKKLHEF 88
>pdb|2L4V|A Chain A, Three Dimensional Structure Of Pineapple Cystatin
Length = 135
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 33 PIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAAQDGTATN 92
P+ + N ++ +FAV EYN ++ L+F V K + QVVSG + L V D
Sbjct: 50 PLNNENGFDKEDLARFAVREYNNKNNALLEFVRVVKAKEQVVSGMMHYLTVEVNDAGKKK 109
Query: 93 KYQAVVWE----NAKQIKKLT 109
Y+A VWE N +Q+++ T
Sbjct: 110 LYEAKVWEQVWMNFRQLQEFT 130
>pdb|3LH4|A Chain A, Crystal Structure Of Sialostatin L2
Length = 115
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 26 ALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSV---EKGETQVVSGTNYRLV 82
AL GG++ + +DP +E+ +A ++ Q + F +V K ETQ V+GTNYRL
Sbjct: 4 ALRGGYRERSNQDDPEYLELAHYATSTWSAQQPGKTHFDTVVEVLKVETQTVAGTNYRLT 63
Query: 83 VAAQDGTA 90
+ + T
Sbjct: 64 LKVAESTC 71
>pdb|3MWZ|A Chain A, Crystal Structure Of The Selenomethionine Derivative Of
The L 22,47, 100 M Mutant Of Sialostatin L2
Length = 115
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 26 ALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSV---EKGETQVVSGTNYRLV 82
AL GG++ + +DP +E +A ++ Q + F +V K ETQ V+GTNYRL
Sbjct: 4 ALRGGYRERSNQDDPEYLEXAHYATSTWSAQQPGKTHFDTVVEVXKVETQTVAGTNYRLT 63
Query: 83 VAAQDGTA 90
+ + T
Sbjct: 64 LKVAESTC 71
>pdb|2W9P|A Chain A, Crystal Structure Of Potato Multicystatin
pdb|2W9P|B Chain B, Crystal Structure Of Potato Multicystatin
pdb|2W9P|C Chain C, Crystal Structure Of Potato Multicystatin
pdb|2W9P|D Chain D, Crystal Structure Of Potato Multicystatin
pdb|2W9P|E Chain E, Crystal Structure Of Potato Multicystatin
pdb|2W9P|F Chain F, Crystal Structure Of Potato Multicystatin
pdb|2W9P|G Chain G, Crystal Structure Of Potato Multicystatin
pdb|2W9P|H Chain H, Crystal Structure Of Potato Multicystatin
pdb|2W9P|I Chain I, Crystal Structure Of Potato Multicystatin
pdb|2W9P|J Chain J, Crystal Structure Of Potato Multicystatin
pdb|2W9P|K Chain K, Crystal Structure Of Potato Multicystatin
pdb|2W9P|L Chain L, Crystal Structure Of Potato Multicystatin
pdb|2W9P|M Chain M, Crystal Structure Of Potato Multicystatin
pdb|2W9P|N Chain N, Crystal Structure Of Potato Multicystatin
pdb|2W9Q|A Chain A, Crystal Structure Of Potato Multicystatin-P212121
Length = 87
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 34 IEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAAQDGTATNK 93
+ +PN+ E+ +FA+ +YNK+ L+F + QVV+G Y + +AA D K
Sbjct: 5 VPNPNNTKFQELARFAIQDYNKKQNAHLEFVENLNVKEQVVAGIMYYITLAATDDAGKKK 64
Query: 94 -YQAVVW-ENAKQIKKLTSF 111
Y+A +W + + KK+ F
Sbjct: 65 IYKAKIWVKEWEDFKKVVEF 84
>pdb|3L0R|A Chain A, Crystal Structure Of Salivary Cystatin From The Soft
Tick Ornithodoros Moubata
pdb|3L0R|B Chain B, Crystal Structure Of Salivary Cystatin From The Soft
Tick Ornithodoros Moubata
Length = 115
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 26 ALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVV 83
++ GGW +DP + +E+ FA + + +V++ ETQVV+G NY+L +
Sbjct: 2 SIPGGWTR-QDPTEARFLELAHFATSSQTEGREFYDTVVTVKEVETQVVAGMNYKLTI 58
>pdb|3LI7|A Chain A, Crystal Structure Of Sialostatin L
pdb|3LI7|B Chain B, Crystal Structure Of Sialostatin L
pdb|3LI7|C Chain C, Crystal Structure Of Sialostatin L
pdb|3LI7|D Chain D, Crystal Structure Of Sialostatin L
Length = 115
Score = 35.0 bits (79), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 39 DPHVIEIGQFAVVEYNKQSKMELKFQSVE---KGETQVVSGTNYRLVVAAQDGTA 90
+P + + +A ++ Q + F +V K ETQVV+GTNYRL + + T
Sbjct: 17 NPEFLNLAHYATSTWSAQQPGKTHFDTVAEVVKVETQVVAGTNYRLTLKVAESTC 71
>pdb|1YVB|I Chain I, The Plasmodium Falciparum Cysteine Protease Falcipain-2
Length = 111
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 27 LVGGWKPIEDPNDPHVIEIGQFAVVEYNKQS--KMELKFQSVEKGETQVVSGTNYRLVV 83
L+G P+ D ND + QFA+ EYN+ S K + V + Q+VSG Y L V
Sbjct: 2 LLGAPVPV-DENDEGLQRALQFAMAEYNRASNDKYSSRVVRVISAKRQLVSGIKYILQV 59
>pdb|1A90|A Chain A, Recombinant Mutant Chicken Egg White Cystatin, Nmr, 31
Structures
Length = 108
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 29 GGWKPIEDPNDPHVIEIGQFAVVEYNKQS--KMELKFQSVEKGETQVVSGTNYRLVV 83
G P+ D ND + QFA+ EYN+ S K + V + Q+VSG Y L V
Sbjct: 1 GAPVPV-DENDEGLQRALQFAIAEYNRASNDKYSSRVVRVISAKRQLVSGIKYILQV 56
>pdb|3SP1|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From
Borrelia Burgdorferi
pdb|3SP1|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From
Borrelia Burgdorferi
Length = 501
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 46 GQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYR 80
G+F +++YNK SK F +V+ E Q S ++R
Sbjct: 290 GEFLIMDYNKMSKSRGNFITVKDLEDQNFSPLDFR 324
>pdb|1CEW|I Chain I, The 2.0 Angstroms X-Ray Crystal Structure Of Chicken Egg
White Cystatin And Its Possible Mode Of Interaction
With Cysteine Proteinases
pdb|1A67|A Chain A, Chicken Egg White Cystatin Wildtype, Nmr, 16 Structures
Length = 108
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 29 GGWKPIEDPNDPHVIEIGQFAVVEYNKQS--KMELKFQSVEKGETQVVSGTNYRLVV 83
G P+ D ND + QFA+ EYN+ S K + V + Q+VSG Y L V
Sbjct: 1 GAPVPV-DENDEGLQRALQFAMAEYNRASNDKYSSRVVRVISAKRQLVSGIKYILQV 56
>pdb|1V82|A Chain A, Crystal Structure Of Human Glcat-P Apo Form
pdb|1V82|B Chain B, Crystal Structure Of Human Glcat-P Apo Form
pdb|1V83|A Chain A, Crystal Structure Of Human Glcat-P In Complex With Udp And
Mn2+
pdb|1V83|B Chain B, Crystal Structure Of Human Glcat-P In Complex With Udp And
Mn2+
pdb|1V84|A Chain A, Crystal Structure Of Human Glcat-p In Complex With N-
Acetyllactosamine, Udp, And Mn2+
pdb|1V84|B Chain B, Crystal Structure Of Human Glcat-p In Complex With N-
Acetyllactosamine, Udp, And Mn2+
Length = 253
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
Query: 20 GARTDAALVGG------WKPIEDPNDPHVIEIGQFAV 50
G R +A V G WK + DP+ P I++ FAV
Sbjct: 143 GLRYEAPRVNGAGKVVRWKTVFDPHRPFAIDMAGFAV 179
>pdb|2KXG|A Chain A, The Solution Structure Of The Squash Aspartic Acid
Proteinase Inhibitor (sqapi)
Length = 95
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 13/82 (15%)
Query: 38 NDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTN-----YRLVVAAQDGTA-- 90
NDP V EI +FA+ ++ +Q+ L V+ G Q++ G Y L+++A+
Sbjct: 15 NDPRVKEIAEFALKQHAEQN---LILAGVDAG--QIIKGIPHWDNYYNLILSAKHSPHEF 69
Query: 91 TNKYQAVVWENAKQIK-KLTSF 111
+ Y VV E A KL +F
Sbjct: 70 SKFYNVVVLEKASDNSLKLVAF 91
>pdb|4D9I|A Chain A, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase
From Escherichia Coli
pdb|4D9I|B Chain B, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase
From Escherichia Coli
pdb|4D9N|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With D-Serine
pdb|4D9N|B Chain B, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With D-Serine
Length = 398
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 17/86 (19%)
Query: 24 DAALVGGWKPIEDP--NDPHVIE-------IGQFAVVEYNKQSKMELKFQSVEKGETQVV 74
D+ G + + +P NDP +I +G A V Y+ Q + ++ ++ K
Sbjct: 314 DSVAALGMRVLGNPYGNDPRIISGESGAVGLGVLAAVHYHPQRQSLMEKLALNKDAV--- 370
Query: 75 SGTNYRLVVAAQDGTATNKYQAVVWE 100
LV++ + T Y+ VVWE
Sbjct: 371 -----VLVISTEGDTDVKHYREVVWE 391
>pdb|4D9M|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With Aminoacrylate-Plp
Azomethine Reaction Intermediate
pdb|4D9M|B Chain B, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With Aminoacrylate-Plp
Azomethine Reaction Intermediate
Length = 398
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 17/86 (19%)
Query: 24 DAALVGGWKPIEDP--NDPHVIE-------IGQFAVVEYNKQSKMELKFQSVEKGETQVV 74
D+ G + + +P NDP +I +G A V Y+ Q + ++ ++ K
Sbjct: 314 DSVAALGMRVLGNPYGNDPRIISGESGAVGLGVLAAVHYHPQRQSLMEKLALNKDAV--- 370
Query: 75 SGTNYRLVVAAQDGTATNKYQAVVWE 100
LV++ + T Y+ VVWE
Sbjct: 371 -----VLVISTEGDTDVKHYREVVWE 391
>pdb|4D9K|A Chain A, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|D Chain D, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|B Chain B, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|C Chain C, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
Length = 398
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 17/86 (19%)
Query: 24 DAALVGGWKPIEDP--NDPHVIE-------IGQFAVVEYNKQSKMELKFQSVEKGETQVV 74
D+ G + + +P NDP +I +G A V Y+ Q + ++ ++ K
Sbjct: 314 DSVAALGMRVLGNPYGNDPRIISGESGAVGLGVLAAVHYHPQRQSLMEKLALNKDAV--- 370
Query: 75 SGTNYRLVVAAQDGTATNKYQAVVWE 100
LV++ + T Y+ VVWE
Sbjct: 371 -----VLVISTEGDTDVKHYREVVWE 391
>pdb|1X6V|B Chain B, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1X6V|A Chain A, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1XJQ|B Chain B, Adp Complex Of Human Paps Synthetase 1
pdb|1XJQ|A Chain A, Adp Complex Of Human Paps Synthetase 1
pdb|1XNJ|B Chain B, Aps Complex Of Human Paps Synthetase 1
pdb|1XNJ|A Chain A, Aps Complex Of Human Paps Synthetase 1
Length = 630
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 43 IEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYR 80
+EI F V YNK+ K + S + + +SGT R
Sbjct: 555 LEIVPFRVAAYNKKKKRMDYYDSEHHEDFEFISGTRMR 592
>pdb|3QNK|A Chain A, Crystal Structure Of A Hypothetical Susd-Like Protein
(Bf3747) From Bacteroides Fragilis Nctc 9343 At 2.70 A
Resolution
pdb|3QNK|B Chain B, Crystal Structure Of A Hypothetical Susd-Like Protein
(Bf3747) From Bacteroides Fragilis Nctc 9343 At 2.70 A
Resolution
pdb|3QNK|C Chain C, Crystal Structure Of A Hypothetical Susd-Like Protein
(Bf3747) From Bacteroides Fragilis Nctc 9343 At 2.70 A
Resolution
pdb|3QNK|D Chain D, Crystal Structure Of A Hypothetical Susd-Like Protein
(Bf3747) From Bacteroides Fragilis Nctc 9343 At 2.70 A
Resolution
Length = 517
Score = 25.4 bits (54), Expect = 8.9, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 53 YNKQSKMEL---KFQSVEKGETQVVSGTNYRLVVAAQDGTATNKYQAVVWENAKQIKKL 108
Y +S++EL +++ V K +V Y+L DGT KY+++ W K K++
Sbjct: 185 YALKSRVELYDKRYEDVIKSCAEV-----YKLGYELVDGTTPEKYRSIWWTTNKDNKEI 238
>pdb|1N9J|A Chain A, Solution Structure Of The 3d Domain Swapped Dimer Of
Stefin A
pdb|1N9J|B Chain B, Solution Structure Of The 3d Domain Swapped Dimer Of
Stefin A
pdb|1NB3|I Chain I, Crystal Structure Of Stefin A In Complex With Cathepsin
H: N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|J Chain J, Crystal Structure Of Stefin A In Complex With Cathepsin
H: N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|K Chain K, Crystal Structure Of Stefin A In Complex With Cathepsin
H: N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|L Chain L, Crystal Structure Of Stefin A In Complex With Cathepsin
H: N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|I Chain I, Crystal Structure Of Stefin A In Complex With Cathepsin
H
pdb|1NB5|J Chain J, Crystal Structure Of Stefin A In Complex With Cathepsin
H
pdb|1NB5|K Chain K, Crystal Structure Of Stefin A In Complex With Cathepsin
H
pdb|1NB5|L Chain L, Crystal Structure Of Stefin A In Complex With Cathepsin
H
pdb|1DVC|A Chain A, Solution Nmr Structure Of Human Stefin A At Ph 5.5 And
308k, Nmr, Minimized Average Structure
pdb|1DVD|A Chain A, Solution Nmr Structure Of Human Stefin A At Ph 5.5 And
308k, Nmr, 17 Structures
pdb|3K9M|C Chain C, Cathepsin B In Complex With Stefin A
pdb|3K9M|D Chain D, Cathepsin B In Complex With Stefin A
pdb|3KFQ|C Chain C, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|D Chain D, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KSE|D Chain D, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|E Chain E, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|F Chain F, Unreduced Cathepsin L In Complex With Stefin A
Length = 98
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 4/24 (16%)
Query: 71 TQVVSGTNYRLVVAAQDGTATNKY 94
TQVV+GTNY + V A D NKY
Sbjct: 45 TQVVAGTNYYIKVRAGD----NKY 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,874,250
Number of Sequences: 62578
Number of extensions: 94926
Number of successful extensions: 304
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 289
Number of HSP's gapped (non-prelim): 26
length of query: 114
length of database: 14,973,337
effective HSP length: 77
effective length of query: 37
effective length of database: 10,154,831
effective search space: 375728747
effective search space used: 375728747
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)