Query 037584
Match_columns 114
No_of_seqs 117 out of 998
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 02:26:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037584.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037584hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00042 CY Substituted updates 99.9 4.6E-21 1E-25 124.4 11.8 83 29-112 1-104 (105)
2 smart00043 CY Cystatin-like do 99.9 3E-21 6.6E-26 125.8 8.5 85 27-112 2-105 (107)
3 PF00031 Cystatin: Cystatin do 99.8 7.2E-19 1.6E-23 111.9 10.5 59 29-88 1-61 (94)
4 PF07430 PP1: Phloem filament 99.6 1.4E-15 3E-20 107.7 8.8 94 17-111 103-202 (202)
5 TIGR01638 Atha_cystat_rel Arab 99.0 1.7E-09 3.7E-14 68.9 7.1 66 36-101 9-77 (92)
6 PF07430 PP1: Phloem filament 99.0 9.1E-10 2E-14 78.2 6.1 88 25-112 4-97 (202)
7 PF06907 Latexin: Latexin; In 96.1 0.15 3.1E-06 37.4 10.2 65 36-100 3-75 (220)
8 TIGR01572 A_thl_para_3677 Arab 94.9 0.13 2.8E-06 38.7 6.5 61 42-102 42-105 (265)
9 PF07172 GRP: Glycine rich pro 93.2 0.033 7.2E-07 35.7 0.6 12 1-12 1-13 (95)
10 COG3360 Uncharacterized conser 89.6 3.1 6.7E-05 25.1 6.3 46 40-86 17-64 (71)
11 PF05984 Cytomega_UL20A: Cytom 89.2 0.35 7.6E-06 30.4 2.2 22 1-22 1-22 (100)
12 PF10731 Anophelin: Thrombin i 88.3 0.53 1.2E-05 27.7 2.4 17 1-17 1-17 (65)
13 PF07311 Dodecin: Dodecin; In 84.4 6.7 0.00015 23.5 7.3 48 38-86 12-61 (66)
14 PF05679 CHGN: Chondroitin N-a 73.3 18 0.00038 29.6 6.9 51 39-89 160-212 (499)
15 PF13028 DUF3889: Protein of u 66.3 32 0.0007 22.1 10.5 74 39-113 20-96 (97)
16 KOG2650 Zinc carboxypeptidase 63.2 23 0.00049 28.6 5.5 63 27-89 317-389 (418)
17 PF00666 Cathelicidins: Cathel 62.0 9.5 0.00021 22.9 2.5 47 41-88 3-53 (67)
18 PF12276 DUF3617: Protein of u 49.2 18 0.0004 24.4 2.6 33 1-33 1-34 (162)
19 PF02402 Lysis_col: Lysis prot 47.1 21 0.00046 19.7 2.1 32 1-33 1-33 (46)
20 PRK14745 RepA leader peptide T 43.5 24 0.00053 16.9 1.7 21 1-21 1-21 (26)
21 cd05881 Ig1_Necl-2 First (N-te 42.3 54 0.0012 20.6 3.8 28 75-102 58-85 (95)
22 KOG4238 Bifunctional ATP sulfu 42.0 23 0.0005 28.6 2.4 45 68-112 509-564 (627)
23 PF06585 JHBP: Haemolymph juve 41.9 21 0.00046 25.8 2.1 19 36-54 33-55 (248)
24 PHA03066 Hypothetical protein; 41.4 25 0.00053 23.2 2.1 19 1-20 1-19 (110)
25 KOG1693 emp24/gp25L/p24 family 40.6 1.1E+02 0.0025 22.3 5.6 25 65-89 45-69 (209)
26 PTZ00334 trans-sialidase; Prov 39.2 18 0.00039 31.5 1.5 20 1-20 39-59 (780)
27 CHL00020 psbN photosystem II p 38.8 34 0.00073 18.7 2.1 26 6-31 5-30 (43)
28 PLN00115 pollen allergen group 38.3 29 0.00063 23.1 2.1 21 1-21 1-21 (118)
29 TIGR03475 tap_IncFII_lead RepA 37.7 40 0.00086 16.3 2.0 21 1-21 1-21 (26)
30 PRK13183 psbN photosystem II r 36.6 45 0.00097 18.5 2.3 26 6-31 8-33 (46)
31 PRK13792 lysozyme inhibitor; P 36.4 24 0.00051 23.8 1.5 22 1-22 1-22 (127)
32 PF12274 DUF3615: Protein of u 35.5 1.1E+02 0.0024 19.0 7.9 59 53-111 1-70 (96)
33 cd01781 AF6_RA_repeat2 Ubiquit 35.4 64 0.0014 20.9 3.3 31 37-67 23-55 (100)
34 COG5337 CotH Spore coat assemb 34.8 19 0.0004 28.8 0.9 39 1-47 1-39 (473)
35 PRK10355 xylF D-xylose transpo 34.6 1.5E+02 0.0032 22.4 5.8 52 1-54 1-52 (330)
36 cd06247 M14_CPO Peptidase M14 34.3 57 0.0012 24.9 3.4 61 28-89 199-269 (298)
37 PF03032 Brevenin: Brevenin/es 33.4 23 0.0005 19.6 0.9 16 2-18 4-19 (46)
38 PF06157 DUF973: Protein of un 31.9 70 0.0015 24.4 3.6 28 72-102 258-285 (285)
39 TIGR03044 PS_II_psb27 photosys 31.5 84 0.0018 21.5 3.5 39 17-55 23-74 (135)
40 PF08048 RepA1_leader: Tap Rep 31.1 66 0.0014 15.3 2.1 21 1-21 1-21 (25)
41 CHL00132 psaF photosystem I su 30.2 1.7E+02 0.0037 21.0 5.0 26 25-52 23-48 (185)
42 PF15144 DUF4576: Domain of un 28.7 76 0.0016 19.7 2.7 20 1-20 1-20 (88)
43 COG1638 DctP TRAP-type C4-dica 28.4 1.9E+02 0.0041 22.4 5.5 60 2-63 3-63 (332)
44 TIGR02105 III_needle type III 27.3 93 0.002 18.8 2.9 21 36-56 30-50 (72)
45 PHA02291 hypothetical protein 27.1 59 0.0013 21.5 2.1 16 1-16 1-18 (132)
46 PRK14744 leu operon leader pep 26.8 31 0.00068 16.9 0.6 9 24-32 19-27 (28)
47 PRK15344 type III secretion sy 26.4 1.1E+02 0.0024 18.6 3.1 21 35-55 28-48 (71)
48 PRK13859 type IV secretion sys 26.3 63 0.0014 18.4 1.9 7 27-33 32-38 (55)
49 PF12273 RCR: Chitin synthesis 26.2 40 0.00088 22.2 1.3 6 14-19 16-21 (130)
50 PRK13883 conjugal transfer pro 25.9 2.1E+02 0.0045 19.9 4.8 20 37-56 28-47 (151)
51 PRK09810 entericidin A; Provis 24.9 76 0.0016 17.1 1.9 18 4-21 4-21 (41)
52 PF15240 Pro-rich: Proline-ric 24.9 50 0.0011 23.6 1.6 8 5-12 3-10 (179)
53 PRK13681 hypothetical protein; 24.8 66 0.0014 16.8 1.6 25 4-32 5-29 (35)
54 PF10572 UPF0556: Uncharacteri 24.7 2.4E+02 0.0053 19.7 4.9 36 75-112 56-94 (158)
55 PRK15396 murein lipoprotein; P 24.2 76 0.0017 19.5 2.1 21 1-21 1-23 (78)
56 PRK14758 hypothetical protein; 24.1 83 0.0018 15.3 1.8 11 8-18 11-21 (27)
57 PF02995 DUF229: Protein of un 24.0 91 0.002 25.5 3.2 29 27-56 450-478 (497)
58 PRK09973 putative outer membra 23.6 84 0.0018 19.7 2.3 21 1-21 1-22 (85)
59 cd03870 M14_CPA Peptidase M14 23.4 2E+02 0.0043 22.0 4.7 61 29-89 200-269 (301)
60 PRK13835 conjugal transfer pro 22.3 2.7E+02 0.0059 19.2 6.5 20 37-56 34-53 (145)
61 PHA02770 hypothetical protein; 22.3 1.9E+02 0.0041 17.3 3.6 17 73-89 47-63 (81)
62 PF14201 DUF4318: Domain of un 22.2 2E+02 0.0043 17.5 6.0 43 46-89 20-66 (74)
63 PF10913 DUF2706: Protein of u 22.1 1.5E+02 0.0032 17.0 2.9 16 6-21 7-22 (60)
64 PF14940 TMEM219: Transmembran 20.5 1.1E+02 0.0024 22.6 2.7 28 28-55 28-55 (223)
65 PF03896 TRAP_alpha: Transloco 20.4 98 0.0021 23.7 2.5 20 70-89 92-111 (285)
66 cd06379 PBP1_iGluR_NMDA_NR1 N- 20.4 1.8E+02 0.0039 22.1 4.0 28 25-57 19-46 (377)
No 1
>cd00042 CY Substituted updates: Jan 30, 2002
Probab=99.87 E-value=4.6e-21 Score=124.41 Aligned_cols=83 Identities=45% Similarity=0.664 Sum_probs=76.9
Q ss_pred ceeeeCCCCCChHHHHHHHHHHHHHHhhCCCc-eEEEEEEEEEEEEeceEeEEEEEEEeeCC------------------
Q 037584 29 GGWKPIEDPNDPHVIEIGQFAVVEYNKQSKME-LKFQSVEKGETQVVSGTNYRLVVAAQDGT------------------ 89 (114)
Q Consensus 29 GG~~~i~~~~d~~v~~~~~~Av~~~n~~~~~~-~~~~~V~~a~~QVVaG~nY~l~v~~~~~~------------------ 89 (114)
|||.++ +.+||++++++++|+.+||+.+++. +.+.+|++|++|||+|++|++++++.++.
T Consensus 1 gg~~~~-~~~d~~~~~~~~~a~~~~N~~~~~~~~~~~~i~~~~~QvvaG~~y~i~~~~~~t~C~k~~~~~~~~~c~~~~~ 79 (105)
T cd00042 1 GGPSDI-PANDPEVQELADFAVAEYNKKSNDKYLEFFKVLSAKSQVVAGTNYYITVEAGDTNCKKSSVPLDCPDCKLLEE 79 (105)
T ss_pred CCCccC-CCCCHHHHHHHHHHHHHHHhhcCccceeEEEEEEEEEEEEeeeEEEEEEEEecccccccCccccccccccccc
Confidence 899995 8999999999999999999999988 77799999999999999999999999862
Q ss_pred -CCceEEEEEEEec-CCceEEEeEE
Q 037584 90 -ATNKYQAVVWENA-KQIKKLTSFH 112 (114)
Q Consensus 90 -~~~~~~~~V~~~p-~~~~~l~sf~ 112 (114)
....|.+.||.+| .+.+++++|+
T Consensus 80 ~~~~~C~~~V~~~pw~~~~~l~~~~ 104 (105)
T cd00042 80 GKKKFCTAKVWEKPWENFKELLSFK 104 (105)
T ss_pred CCCEEEEEEEEecCCCCceeeeecc
Confidence 4679999999999 9999999985
No 2
>smart00043 CY Cystatin-like domain. Cystatins are a family of cysteine protease inhibitors that occur mainly as single domain proteins. However some extracellular proteins such as kininogen, His-rich glycoprotein and fetuin also contain these domains.
Probab=99.85 E-value=3e-21 Score=125.77 Aligned_cols=85 Identities=39% Similarity=0.581 Sum_probs=77.4
Q ss_pred ccceeeeCCCCCChHHHHHHHHHHHHHHhhCCCceE--EEEEEEEEEEEeceEeEEEEEEEeeCCCC-------------
Q 037584 27 LVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELK--FQSVEKGETQVVSGTNYRLVVAAQDGTAT------------- 91 (114)
Q Consensus 27 ~~GG~~~i~~~~d~~v~~~~~~Av~~~n~~~~~~~~--~~~V~~a~~QVVaG~nY~l~v~~~~~~~~------------- 91 (114)
++|||+++ +.+||++++++++|+.+||+++++.|. +.+|++|++|||+|++|++++++.++.=.
T Consensus 2 ~~Gg~~~~-~~~d~~~~~~~~~a~~~~N~~~~~~~~~~~~~v~~a~~QvvaG~~y~l~~~v~~t~C~k~~~~~~~C~~~~ 80 (107)
T smart00043 2 CLGGPSDV-PPNDPEVQEAADFAVAEYNKKSNDKYELRVIKVVSAKSQVVAGTNYYLKVEVGETNCKKLSVDLENCPFLD 80 (107)
T ss_pred CCCCCccC-CCCCHHHHHHHHHHHHHHHHhcccchhhhhhhhheeeeeeecceEEEEEEEEEeceeccCCcccccCCCCC
Confidence 68999995 889999999999999999999988887 68999999999999999999999987611
Q ss_pred ---ceEEEEEEEec-CCceEEEeEE
Q 037584 92 ---NKYQAVVWENA-KQIKKLTSFH 112 (114)
Q Consensus 92 ---~~~~~~V~~~p-~~~~~l~sf~ 112 (114)
..|.++||.+| .+++++++|+
T Consensus 81 ~~~~~C~~~V~~~pw~~~~~~~~~~ 105 (107)
T smart00043 81 QGEKFCTAKVWEKPWENKIKLVEFK 105 (107)
T ss_pred CCccEEEEEEEecCCCCccCcccee
Confidence 47999999999 9999999986
No 3
>PF00031 Cystatin: Cystatin domain; InterPro: IPR000010 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The cystatins are cysteine proteinase inhibitors belonging to MEROPS inhibitor family I25, clan IH [, , ]. They mainly inhibit peptidases belonging to peptidase families C1 (papain family) and C13 (legumain family). The cystatin family includes: The Type 1 cystatins, which are intracellular cystatins that are present in the cytosol of many cell types, but can also appear in body fluids at significant concentrations. They are single-chain polypeptides of about 100 residues, which have neither disulphide bonds nor carbohydrate side chains. The Type 2 cystatins, which are mainly extracellular secreted polypeptides synthesised with a 19-28 residue signal peptide. They are broadly distributed and found in most body fluids. The Type 3 cystatins, which are multidomain proteins. The mammalian representatives of this group are the kininogens. There are three different kininogens in mammals: H- (high molecular mass, IPR002395 from INTERPRO) and L- (low molecular mass) kininogen which are found in a number of species, and T-kininogen that is found only in rat. Unclassified cystatins. These are cystatin-like proteins found in a range of organisms: plant phytocystatins, fetuin in mammals, insect cystatins and a puff adder venom cystatin which inhibits metalloproteases of the MEROPS peptidase family M12 (astacin/adamalysin). Also a number of the cystatins-like proteins have been shown to be devoid of inhibitory activity. All true cystatins inhibit cysteine peptidases of the papain family (MEROPS peptidase family C1), and some also inhibit legumain family enzymes (MEROPS peptidase family C13). These peptidases play key roles in physiological processes, such as intracellular protein degradation (cathepsins B, H and L), are pivotal in the remodelling of bone (cathepsin K), and may be important in the control of antigen presentation (cathepsin S, mammalian legumain). Moreover, the activities of such peptidases are increased in pathophysiological conditions, such as cancer metastasis and inflammation. Additionally, such peptidases are essential for several pathogenic parasites and bacteria. Thus in animals cystatins not only have capacity to regulate normal body processes and perhaps cause disease when down-regulated, but in other organisms may also participate in defence against biotic and abiotic stress. ; GO: 0004869 cysteine-type endopeptidase inhibitor activity; PDB: 3L0R_B 2W9P_K 2W9Q_A 3S67_A 3QRD_D 1R4C_G 3GAX_A 1TIJ_B 1G96_A 3NX0_A ....
Probab=99.80 E-value=7.2e-19 Score=111.91 Aligned_cols=59 Identities=41% Similarity=0.650 Sum_probs=55.0
Q ss_pred ceeeeCCCCCChHHHHHHHHHHHHHHhhCCCc--eEEEEEEEEEEEEeceEeEEEEEEEeeC
Q 037584 29 GGWKPIEDPNDPHVIEIGQFAVVEYNKQSKME--LKFQSVEKGETQVVSGTNYRLVVAAQDG 88 (114)
Q Consensus 29 GG~~~i~~~~d~~v~~~~~~Av~~~n~~~~~~--~~~~~V~~a~~QVVaG~nY~l~v~~~~~ 88 (114)
|||+++ +++||++++++++|+.+||+++++. |.+.+|++|++|||+|++|+|++++.++
T Consensus 1 Gg~~~~-~~~dp~v~~~~~~al~~~N~~~~~~~~~~~~~v~~a~~QvV~G~~Y~i~~~~~~t 61 (94)
T PF00031_consen 1 GGPSPV-DPNDPEVQEAAEFALDKFNEQSNSGYKFKLVKVISATTQVVAGINYYIEFEVGET 61 (94)
T ss_dssp SSEEEE-CTTSHHHHHHHHHHHHHHHHHSTTSEEEEEEEEEEEEEEESSSEEEEEEEEEEEE
T ss_pred CCCccC-CCCCHHHHHHHHHHHHHHHHhCcccCcceeeeeeEEEEeecCCceEEEEEEEEcc
Confidence 899996 8999999999999999999999665 4669999999999999999999999987
No 4
>PF07430 PP1: Phloem filament protein PP1; InterPro: IPR009994 This domain represents a conserved region approximately 200 residues long, four copies of which are found within the plant phloem filament protein PP1. This is one of the constituents of the proteinaceous filaments found in the sieve elements of Cucurbita phloem [].
Probab=99.64 E-value=1.4e-15 Score=107.67 Aligned_cols=94 Identities=40% Similarity=0.623 Sum_probs=79.3
Q ss_pred hhccccCCccccceeeeCCCCCChHHHHHHHHHHHHHHhhCCCceEEEEEEEEEEEEec--eEeEEEEEEEeeC-CCCce
Q 037584 17 LATGARTDAALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVS--GTNYRLVVAAQDG-TATNK 93 (114)
Q Consensus 17 ~~~~~~~~~~~~GG~~~i~~~~d~~v~~~~~~Av~~~n~~~~~~~~~~~V~~a~~QVVa--G~nY~l~v~~~~~-~~~~~ 93 (114)
+++..+..++...+|.+|+|+++|.+|++++||+.+|| +.++.++|++|.+++.|=++ |++|+|++.+.|+ ++...
T Consensus 103 ~~~v~pv~~p~~~~Wi~I~nin~p~VQeLgkFAV~EhN-K~gd~LkF~KV~eGw~q~l~~d~ikYrLhI~AkDg~G~~~~ 181 (202)
T PF07430_consen 103 GAVVYPVATPQSKKWIPIPNINNPFVQELGKFAVIEHN-KAGDKLKFEKVYEGWYQDLGNDGIKYRLHIVAKDGLGRLGN 181 (202)
T ss_pred ceeeccccCcccCCCEECCCCCcHHHHHHHHHHHHHHh-hcCCceEEEEEeeEEEEeccCCCceEEEEEEeecCCCCcCc
Confidence 33445555677899999989999999999999999999 67889999999999999884 6999999999998 68889
Q ss_pred EEEEEEEec--C-CceEEEeE
Q 037584 94 YQAVVWENA--K-QIKKLTSF 111 (114)
Q Consensus 94 ~~~~V~~~p--~-~~~~l~sf 111 (114)
|+|.||+++ . ..+.|.||
T Consensus 182 YeAvV~~k~~~sk~i~i~~sf 202 (202)
T PF07430_consen 182 YEAVVWEKQFLSKKIKILESF 202 (202)
T ss_pred eEEEEEEeccCcceEEEEecC
Confidence 999999986 3 44445555
No 5
>TIGR01638 Atha_cystat_rel Arabidopsis thaliana cystatin-related protein. This model represents a family similar in sequence and probably homologous to a large family of cysteine proteinase inhibitors, or cystatins, as described by pfam model pfam00031. Cystatins may help plants resist attack by insects.
Probab=99.02 E-value=1.7e-09 Score=68.86 Aligned_cols=66 Identities=17% Similarity=0.138 Sum_probs=56.4
Q ss_pred CCCChHHHHHHHHHHHHHHhhCCCceEEEEEEEEEEEEeceEeEEEEEEEeeCC---CCceEEEEEEEe
Q 037584 36 DPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAAQDGT---ATNKYQAVVWEN 101 (114)
Q Consensus 36 ~~~d~~v~~~~~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~l~v~~~~~~---~~~~~~~~V~~~ 101 (114)
..+.+-++++++.|+++||+..+..++|++|++|..|..+|..|+|++++.|.. ..+.+++.||..
T Consensus 9 ~T~rd~~~~la~~al~k~N~~~~t~lEfV~vVrAn~~~~~g~~~yITF~Ard~~d~p~~e~~q~~v~~~ 77 (92)
T TIGR01638 9 ETNRDLLERLSYVASKKYNDTKFLNLELVEVVRANYRGGAKSKSYITFEARDKPDGPLGEYQQAAVVYL 77 (92)
T ss_pred cCHHHHHHHHHHHHHHHhhhhcCceEEEEEEEEEEeeccceEEEEEEEEEecCCCCCHHHhhheeeEec
Confidence 345666899999999999999999999999999999999999999999999864 345667776653
No 6
>PF07430 PP1: Phloem filament protein PP1; InterPro: IPR009994 This domain represents a conserved region approximately 200 residues long, four copies of which are found within the plant phloem filament protein PP1. This is one of the constituents of the proteinaceous filaments found in the sieve elements of Cucurbita phloem [].
Probab=99.00 E-value=9.1e-10 Score=78.24 Aligned_cols=88 Identities=33% Similarity=0.473 Sum_probs=78.0
Q ss_pred ccccceeeeCCCCCChHHHHHHHHHHHHHHhhCCCceEEEEEEEEE--EEEeceEeEEEEEEEeeC-CCCceEEEEEEEe
Q 037584 25 AALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGE--TQVVSGTNYRLVVAAQDG-TATNKYQAVVWEN 101 (114)
Q Consensus 25 ~~~~GG~~~i~~~~d~~v~~~~~~Av~~~n~~~~~~~~~~~V~~a~--~QVVaG~nY~l~v~~~~~-~~~~~~~~~V~~~ 101 (114)
....+||.+|+|+.+|.+|+++.|++.+++.+-++.+.|..|.+.+ .|..+|+.|++.+++-|- +..-.|++.|+++
T Consensus 4 ~~~~~~w~~ip~v~~~~~q~v~~~~veq~k~~~~~~l~~~~v~egwy~el~~~~~~yrlhv~a~d~l~r~l~~e~ii~e~ 83 (202)
T PF07430_consen 4 VPFSPKWIKIPDVKEPCLQEVAKFAVEQFKIQYGDSLKFRSVVEGWYFELCPNSLKYRLHVKAIDFLGRSLKYEAIIIEE 83 (202)
T ss_pred cccCcccccCCcccchHHHHHHHHHHHHHhhhcccceeeeeeeeceeecccccceeEEEeehhhhhhccccceeeeeeeh
Confidence 4567999999999999999999999999999999999999999999 678899999999999874 3456899999986
Q ss_pred -c--CCceEEEeEE
Q 037584 102 -A--KQIKKLTSFH 112 (114)
Q Consensus 102 -p--~~~~~l~sf~ 112 (114)
| ++.++|.||-
T Consensus 84 ~~~~~~~~kl~s~l 97 (202)
T PF07430_consen 84 KPQLTRIRKLASIL 97 (202)
T ss_pred hhhhhhhhhhheee
Confidence 6 7899988874
No 7
>PF06907 Latexin: Latexin; InterPro: IPR009684 This family consists of several animal specific latexin and proteins related to latexin that belong to MEROPS proteinase inhibitor family I47, clan I- []. Latexin, a protein possessing inhibitory activity against rat carboxypeptidase A1 (CPA1) and CPA2 (MEROPS peptidase family M14A), is expressed in a neuronal subset in the cerebral cortex and cells in other neural and non-neural tissues of rat [, ]. OCX-32, the 32 kDa eggshell matrix protein, is present at high levels in the uterine fluid during the terminal phase of eggshell formation, and is localised predominantly in the outer eggshell. The timing of OCX-32 secretion into the uterine fluid suggests that it may play a role in the termination of mineral deposition []. OCX-32 protein possesses limited identity (32%) to two unrelated proteins: latexin and to a skin protein that is encoded by a retinoic acid receptor-responsive gene, TIG1. Tazarotene Induced Gene 1 (TIG1) is a putative 228 transmembrane protein with a small N-terminal intracellular region, a single membrane-spanning hydrophobic region, and a large C-terminal extracellular region containing a glycosylation signal. TIG1 is up-regulated by retinoic acid receptor but not by retinoid X receptor-specific synthetic retinoids []. TIG1 may be a tumour suppressor gene whose diminished expression is involved in the malignant progression of prostate cancer [].; PDB: 1WNH_A 2BO9_B.
Probab=96.10 E-value=0.15 Score=37.44 Aligned_cols=65 Identities=18% Similarity=0.232 Sum_probs=51.8
Q ss_pred CCCChHHHHHHHHHHHHHHhhCCCce---EEEEEEEEEEEEec--eEeEEEEEEEeeCC---CCceEEEEEEE
Q 037584 36 DPNDPHVIEIGQFAVVEYNKQSKMEL---KFQSVEKGETQVVS--GTNYRLVVAAQDGT---ATNKYQAVVWE 100 (114)
Q Consensus 36 ~~~d~~v~~~~~~Av~~~n~~~~~~~---~~~~V~~a~~QVVa--G~nY~l~v~~~~~~---~~~~~~~~V~~ 100 (114)
+++.-..+++|+.|..-+|-..++++ .+.+|.+|...++. |-+|.+.+.+.+-. ....|.|+|+-
T Consensus 3 ~p~h~~a~rAA~va~hy~N~~~GSP~~l~~l~~V~~a~~e~ip~~G~Ky~L~FSte~~~~~e~~g~CsA~V~f 75 (220)
T PF06907_consen 3 NPSHRPAQRAARVAQHYINYRAGSPSRLFVLQQVQKARAEDIPGEGCKYDLVFSTEEYIEGEHLGNCSAEVFF 75 (220)
T ss_dssp -TTSHHHHHHHHHHHHHHHHHH-BTTB-EEEEEEEEEEEEEETTTEEEEEEEEEEEETTT---EEEEEEEEEE
T ss_pred CCcchHHHHHHHHHHHHhccccCCCceeeehhhhhhhhheeccCCCCEEEEEEEhHHhhcCCceeEeEEEEEe
Confidence 56667789999999999998877764 45799999999985 78999999998843 55789999986
No 8
>TIGR01572 A_thl_para_3677 Arabidopsis paralogous family TIGR01572. This model describes a paralogous family of hypothetical proteins in Arabidopsis thaliana. No homologs are detected from other species. Length heterogeneity within the family is attributable partly to a 21-residue repeat present in from zero to three tandem copies. The central region of the repeat resembles the pattern [VIF][FY][QK]GX[LM]P[DEK]XXXDDAL.
Probab=94.87 E-value=0.13 Score=38.70 Aligned_cols=61 Identities=20% Similarity=0.237 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhhCCCceEEEEEEEEEEEEeceEeEEEEEEEeeCC---CCceEEEEEEEec
Q 037584 42 VIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSGTNYRLVVAAQDGT---ATNKYQAVVWENA 102 (114)
Q Consensus 42 v~~~~~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~l~v~~~~~~---~~~~~~~~V~~~p 102 (114)
++-.|+.++..||...++.++|..|.+.-.+..+-+.|+|++++.|.. ..++|+..|.+.-
T Consensus 42 vklyAr~GLH~YN~~~GTNlel~~v~K~N~~~~~~~syyITL~A~DP~s~~s~qTFQtrV~e~~ 105 (265)
T TIGR01572 42 VKIYARVGLHRYNFLEGTNLELDHVDKFNKRMCALSSYYITLLAVDPDSRFLQQTFQVRVDEQK 105 (265)
T ss_pred HHHHHHhhhhhhhhccCccceehhhhhhccchhhheeeeEEEEEecCCccccceEEEEEEEecc
Confidence 477799999999999999999999999999999999999999999865 4577888887755
No 9
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=93.23 E-value=0.033 Score=35.74 Aligned_cols=12 Identities=42% Similarity=0.686 Sum_probs=7.3
Q ss_pred Ccch-hhHHHHHH
Q 037584 1 MKGR-CLYLALFL 12 (114)
Q Consensus 1 m~~~-~~~l~~~~ 12 (114)
|+|| ++||+||+
T Consensus 1 MaSK~~llL~l~L 13 (95)
T PF07172_consen 1 MASKAFLLLGLLL 13 (95)
T ss_pred CchhHHHHHHHHH
Confidence 8887 45555553
No 10
>COG3360 Uncharacterized conserved protein [Function unknown]
Probab=89.62 E-value=3.1 Score=25.13 Aligned_cols=46 Identities=15% Similarity=0.198 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHHhhCCCceEEEEEEEEEEEEece--EeEEEEEEEe
Q 037584 40 PHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSG--TNYRLVVAAQ 86 (114)
Q Consensus 40 ~~v~~~~~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG--~nY~l~v~~~ 86 (114)
+.+.++++-|++.-.+ +-+.+.+.+|++-+.+|+.| ..|.++++++
T Consensus 17 ~S~d~Ai~~Ai~RA~~-t~~~l~wfeV~~~rg~v~~g~v~hyqv~lkVg 64 (71)
T COG3360 17 TSIDAAIANAIARAAD-TLDNLDWFEVVETRGHVVDGAVAHYQVTLKVG 64 (71)
T ss_pred ccHHHHHHHHHHHHHh-hhhcceEEEEEeecccEeecceEEEEEEEEEE
Confidence 4466667777776442 33567889999999999988 4788888875
No 11
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=89.19 E-value=0.35 Score=30.45 Aligned_cols=22 Identities=36% Similarity=0.360 Sum_probs=16.6
Q ss_pred CcchhhHHHHHHHHHHhhcccc
Q 037584 1 MKGRCLYLALFLSTLLLATGAR 22 (114)
Q Consensus 1 m~~~~~~l~~~~~~~~~~~~~~ 22 (114)
|+||+.+|+++.+.+-.+.+++
T Consensus 1 MaRRlwiLslLAVtLtVALAAP 22 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVALAAP 22 (100)
T ss_pred CchhhHHHHHHHHHHHHHhhcc
Confidence 9999999999976665554444
No 12
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=88.27 E-value=0.53 Score=27.72 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=13.5
Q ss_pred CcchhhHHHHHHHHHHh
Q 037584 1 MKGRCLYLALFLSTLLL 17 (114)
Q Consensus 1 m~~~~~~l~~~~~~~~~ 17 (114)
|++|+|+++++-++++.
T Consensus 1 MA~Kl~vialLC~aLva 17 (65)
T PF10731_consen 1 MASKLIVIALLCVALVA 17 (65)
T ss_pred CcchhhHHHHHHHHHHH
Confidence 99999999887655555
No 13
>PF07311 Dodecin: Dodecin; InterPro: IPR009923 This entry represents proteins with a Dodecin-like topology. Dodecin flavoprotein is a small dodecameric flavin-binding protein from Halobacterium salinarium (Halobacterium halobium) that contains two flavins stacked in a single binding pocket between two tryptophan residues to form an aromatic tetrade []. Dodecin binds riboflavin, although it appears to have a broad specificity for flavins. Lumichrome, a molecule associated with flavin metabolism, appears to be a ligand of dodecin, which could act as a waste-trapping device. ; PDB: 2VYX_L 2DEG_F 2V18_K 2V19_D 2UX9_B 2CZ8_E 2V21_F 2CC8_A 2CCB_A 2VX9_A ....
Probab=84.36 E-value=6.7 Score=23.46 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=38.4
Q ss_pred CChHHHHHHHHHHHHHHhhCCCceEEEEEEEEEEEEece--EeEEEEEEEe
Q 037584 38 NDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVVSG--TNYRLVVAAQ 86 (114)
Q Consensus 38 ~d~~v~~~~~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG--~nY~l~v~~~ 86 (114)
+.....++.+.|+.+-++. -..+...+|.+-+..|.+| ..|+.+++++
T Consensus 12 S~~S~edAv~~Av~~A~kT-l~ni~~~eV~e~~~~v~dg~i~~y~v~lkv~ 61 (66)
T PF07311_consen 12 SPKSWEDAVQNAVARASKT-LRNIRWFEVKEQRGHVEDGKITEYQVNLKVS 61 (66)
T ss_dssp ESSHHHHHHHHHHHHHHHH-SSSEEEEEEEEEEEEEETTCEEEEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHhhc-hhCcEEEEEEEEEEEEeCCcEEEEEEEEEEE
Confidence 4567888888899887753 3568889999999999988 5799988875
No 14
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=73.31 E-value=18 Score=29.65 Aligned_cols=51 Identities=20% Similarity=0.270 Sum_probs=43.4
Q ss_pred ChHHHHHHHHHHHHHHhhCCCceEEEEEEEEEEEEe--ceEeEEEEEEEeeCC
Q 037584 39 DPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVV--SGTNYRLVVAAQDGT 89 (114)
Q Consensus 39 d~~v~~~~~~Av~~~n~~~~~~~~~~~V~~a~~QVV--aG~nY~l~v~~~~~~ 89 (114)
-+++.++.+.|+...|+.....+.|.+++.....+- -|+.|.+++.+....
T Consensus 160 ~~dl~~vi~~a~~~ln~~~~~~~~~~~l~~GY~R~dp~rG~~Y~Ldl~l~~~~ 212 (499)
T PF05679_consen 160 REDLDDVIEQAMEELNRKSRRVLEFRDLINGYRRFDPTRGMDYILDLLLKYKK 212 (499)
T ss_pred HHHHHHHHHHHHHHHhccccccEEeeeeeeEEEEecCCCCceEEEEEEEeecc
Confidence 467889999999999998877889999999887764 599999999887643
No 15
>PF13028 DUF3889: Protein of unknown function (DUF3889)
Probab=66.26 E-value=32 Score=22.10 Aligned_cols=74 Identities=15% Similarity=0.047 Sum_probs=49.7
Q ss_pred ChHHHHHHHHHHHHHHhhCCCceEEEEEEEEE-EEEece-EeEEEEEEEeeCCCCceEEEEEEEec-CCceEEEeEEe
Q 037584 39 DPHVIEIGQFAVVEYNKQSKMELKFQSVEKGE-TQVVSG-TNYRLVVAAQDGTATNKYQAVVWENA-KQIKKLTSFHR 113 (114)
Q Consensus 39 d~~v~~~~~~Av~~~n~~~~~~~~~~~V~~a~-~QVVaG-~nY~l~v~~~~~~~~~~~~~~V~~~p-~~~~~l~sf~~ 113 (114)
+|.+.+=.+.|+++.-++-. ...++.-+... +|+-.+ +.-.+++.+.++++.-...+.|+-.| .++..=.+|.+
T Consensus 20 ~p~yaKWgrlA~~~~k~~Yp-~a~v~DY~~vGr~~~~~~~t~e~Fkl~l~~~~kefgV~v~V~f~p~T~ki~~I~~~e 96 (97)
T PF13028_consen 20 QPSYAKWGRLAVQETKEKYP-GAEVVDYLYVGRTKVNDEQTVEKFKLWLREGGKEFGVFVTVSFNPKTEKIISINVEE 96 (97)
T ss_pred CCcHHHHHHHHHHHHHHHCC-CCEEeeeeeecceecCCcceEEEEEEEEEcCCeEEEEEEEEEEeCCCCcEEEEEEEe
Confidence 47788888888887655421 12333333333 445566 78999999999987777888888889 66665555543
No 16
>KOG2650 consensus Zinc carboxypeptidase [Function unknown]
Probab=63.18 E-value=23 Score=28.60 Aligned_cols=63 Identities=13% Similarity=0.047 Sum_probs=45.9
Q ss_pred ccceeeeCCCCCChHHHHHHHHHHHHHHhhCCCceEEEEEEEE----------EEEEeceEeEEEEEEEeeCC
Q 037584 27 LVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKG----------ETQVVSGTNYRLVVAAQDGT 89 (114)
Q Consensus 27 ~~GG~~~i~~~~d~~v~~~~~~Av~~~n~~~~~~~~~~~V~~a----------~~QVVaG~nY~l~v~~~~~~ 89 (114)
.|=|++.....|-++++++++.|++..++.+++.|.+-..-.. +.+=+.|+.|.+++++.|++
T Consensus 317 yPyg~~~~~~~~~~dl~~va~~a~~ai~~~~gt~Y~~G~~~~~~y~asG~S~Dway~~~gi~~~ft~ELrd~g 389 (418)
T KOG2650|consen 317 YPYGYTNDLPEDYEDLQEVARAAADALKSVYGTKYTVGSSADTLYPASGGSDDWAYDVLGIPYAFTFELRDTG 389 (418)
T ss_pred ecccccCCCCCCHHHHHHHHHHHHHHHHHHhCCEEEeccccceeeccCCchHHHhhhccCCCEEEEEEeccCC
Confidence 4667776334567788999999999999988888877322111 23346889999999999765
No 17
>PF00666 Cathelicidins: Cathelicidin; InterPro: IPR001894 The precursor sequences of a number of antimicrobial peptides secreted by neutrophils (polymorphonuclear leukocytes) upon activation have been found to be evolutionarily related and are collectively known as cathelicidins []. Structurally, these proteins consist of three domains: a signal sequence, a conserved region of about 100 residues that contains four cysteines involved in two disulphide bonds, and a highly divergent C-terminal section of variable size. It is in this C-terminal section that the antibacterial peptides are found; they are proteolytically processed from their precursor by enzymes such as elastase. This structure is shown in the following schematic representation: +---+--------------------------------+--------------------+ |Sig| Propeptide C C C C | Antibacterial pep. | +---+----------------|--|--|--|------+--------------------+ | | | | +--+ +--+ 'C': conserved cysteine involved in a disulphide bond. ; GO: 0006952 defense response, 0005576 extracellular region; PDB: 1KWI_A 1PFP_A 1LXE_A 1N5P_A 1N5H_A.
Probab=61.98 E-value=9.5 Score=22.90 Aligned_cols=47 Identities=19% Similarity=-0.012 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhhCCCceEEEEEEEEEEEEe----ceEeEEEEEEEeeC
Q 037584 41 HVIEIGQFAVVEYNKQSKMELKFQSVEKGETQVV----SGTNYRLVVAAQDG 88 (114)
Q Consensus 41 ~v~~~~~~Av~~~n~~~~~~~~~~~V~~a~~QVV----aG~nY~l~v~~~~~ 88 (114)
.++++...|+..||+++.+.. +.+++.+.-+.- .++.--+.|.++++
T Consensus 3 sY~eav~~Av~~yN~~s~~~n-lfRLLe~~p~P~~~~~~~~~~pl~FtIkET 53 (67)
T PF00666_consen 3 SYEEAVLRAVDFYNQGSSGEN-LFRLLELDPPPGWDEDPSTPKPLNFTIKET 53 (67)
T ss_dssp CCHHHHHHHHHHHHHCS-SSE-EEEEEEE---SSSSSSSSS-EEEEEEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCccC-ceeeeeccCCCCCCCCcCcceeeEEEEeec
Confidence 367899999999999887653 335555554432 22344555555554
No 18
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=49.19 E-value=18 Score=24.43 Aligned_cols=33 Identities=24% Similarity=0.203 Sum_probs=15.9
Q ss_pred CcchhhHHHHHHHHH-HhhccccCCccccceeee
Q 037584 1 MKGRCLYLALFLSTL-LLATGARTDAALVGGWKP 33 (114)
Q Consensus 1 m~~~~~~l~~~~~~~-~~~~~~~~~~~~~GG~~~ 33 (114)
|.+.++++.++++++ .+..++.....-+|-|.-
T Consensus 1 M~~~~~~~~~~~~~~~~~~~~a~~~~~kpGlWe~ 34 (162)
T PF12276_consen 1 MKRRLLLALALALLALAAAAAAAAPDIKPGLWEV 34 (162)
T ss_pred CchHHHHHHHHHHHHhhcccccccCCCCCcccEE
Confidence 555444443333222 333333334557899964
No 19
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=47.15 E-value=21 Score=19.67 Aligned_cols=32 Identities=34% Similarity=0.489 Sum_probs=13.9
Q ss_pred CcchhhHHHHHHHH-HHhhccccCCccccceeee
Q 037584 1 MKGRCLYLALFLST-LLLATGARTDAALVGGWKP 33 (114)
Q Consensus 1 m~~~~~~l~~~~~~-~~~~~~~~~~~~~~GG~~~ 33 (114)
|. +++++.+|++. ++.+|-++.-+..-||-..
T Consensus 1 Mk-Ki~~~~i~~~~~~L~aCQaN~iRDvqGGtVa 33 (46)
T PF02402_consen 1 MK-KIIFIGIFLLTMLLAACQANYIRDVQGGTVA 33 (46)
T ss_pred Cc-EEEEeHHHHHHHHHHHhhhcceecCCCceEC
Confidence 44 33444444333 3444444433445555443
No 20
>PRK14745 RepA leader peptide Tap; Provisional
Probab=43.54 E-value=24 Score=16.92 Aligned_cols=21 Identities=29% Similarity=0.248 Sum_probs=13.1
Q ss_pred CcchhhHHHHHHHHHHhhccc
Q 037584 1 MKGRCLYLALFLSTLLLATGA 21 (114)
Q Consensus 1 m~~~~~~l~~~~~~~~~~~~~ 21 (114)
|-|++=+|.+-.+++.|.+++
T Consensus 1 mlrk~qylfl~hlllpcnisa 21 (26)
T PRK14745 1 MLRKFQYLFLWHLLLPCIVSA 21 (26)
T ss_pred ChHHHHHHHHHHHHhhccccc
Confidence 667777776555555555444
No 21
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=42.28 E-value=54 Score=20.59 Aligned_cols=28 Identities=11% Similarity=0.280 Sum_probs=21.8
Q ss_pred ceEeEEEEEEEeeCCCCceEEEEEEEec
Q 037584 75 SGTNYRLVVAAQDGTATNKYQAVVWENA 102 (114)
Q Consensus 75 aG~nY~l~v~~~~~~~~~~~~~~V~~~p 102 (114)
.|..|.|++.-...++...|.|.+|..|
T Consensus 58 ~~~~~tL~I~~vq~~D~G~Y~Cqv~t~p 85 (95)
T cd05881 58 SSNELRVSLSNVSLSDEGRYFCQLYTDP 85 (95)
T ss_pred CCCEEEEEECcCCcccCEEEEEEEEccc
Confidence 4778877766655556779999999988
No 22
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=41.99 E-value=23 Score=28.64 Aligned_cols=45 Identities=20% Similarity=0.365 Sum_probs=24.5
Q ss_pred EEEEEEeceEeEEEEEEEeeC-----CCCceEE----EEEEEe-c-CCceEEEeEE
Q 037584 68 KGETQVVSGTNYRLVVAAQDG-----TATNKYQ----AVVWEN-A-KQIKKLTSFH 112 (114)
Q Consensus 68 ~a~~QVVaG~nY~l~v~~~~~-----~~~~~~~----~~V~~~-p-~~~~~l~sf~ 112 (114)
.+++.++||.||+|.=.=-.+ +.+..|+ +.|..- | ....++.-|.
T Consensus 509 h~rsrm~ag~~~yivgrdpagm~~pe~~~dlye~thgakvlsmapgl~~l~i~pfr 564 (627)
T KOG4238|consen 509 HCRSRMIAGANFYIVGRDPAGMPHPETKKDLYEPTHGAKVLSMAPGLTSLEIIPFR 564 (627)
T ss_pred hHHHHhhccCeeEEeccCcCCCCCCCCCccccccCCCceeeeecCCcceeeeeeee
Confidence 356778999999875221111 1222333 556543 5 6666666553
No 23
>PF06585 JHBP: Haemolymph juvenile hormone binding protein (JHBP); InterPro: IPR010562 This family consists of several insect specific haemolymph juvenile hormone binding proteins (JHBP). Juvenile hormone (JH) has a profound effect on insects. It regulates embryogenesis, maintains the status quo of larva development and stimulates reproductive maturation in the adult forms. JH is transported from the sites of its synthesis to target tissues by a haemolymph carrier called juvenile hormone-binding protein (JHBP). JHBP protects the JH molecules from hydrolysis by non-specific esterases present in the insect haemolymph []. The crystal structure of the JHBP from Galleria mellonella (Wax moth) shows an unusual fold consisting of a long alpha-helix wrapped in a much curved antiparallel beta-sheet. The folding pattern for this structure closely resembles that found in some tandem-repeat mammalian lipid-binding and bactericidal permeability-increasing proteins, with a similar organisation of the major cavity and a disulphide bond linking the long helix and the beta-sheet. It would appear that JHBP forms two cavities, only one of which, the one near the N- and C-termini, binds the hormone; binding induces a conformational change, of unknown significance [, ].; PDB: 3A1Z_D 3AOS_B 3AOT_A 2RQF_A 2RCK_A 3E8W_A 3E8T_A.
Probab=41.91 E-value=21 Score=25.75 Aligned_cols=19 Identities=16% Similarity=0.006 Sum_probs=7.2
Q ss_pred CCCChHH----HHHHHHHHHHHH
Q 037584 36 DPNDPHV----IEIGQFAVVEYN 54 (114)
Q Consensus 36 ~~~d~~v----~~~~~~Av~~~n 54 (114)
.-+||+. ++.++.+...+.
T Consensus 33 ~~~~~~~~~cl~~~~~~~~~~l~ 55 (248)
T PF06585_consen 33 KRSDPNLNECLRESIENFRPYLA 55 (248)
T ss_dssp BTT----HHHHHHHHHHHHHHHT
T ss_pred CCCCccHHHHHHHHHHHHHHhhc
Confidence 3444544 444555555543
No 24
>PHA03066 Hypothetical protein; Provisional
Probab=41.42 E-value=25 Score=23.16 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=13.5
Q ss_pred CcchhhHHHHHHHHHHhhcc
Q 037584 1 MKGRCLYLALFLSTLLLATG 20 (114)
Q Consensus 1 m~~~~~~l~~~~~~~~~~~~ 20 (114)
|++ +++|..|++++++++.
T Consensus 1 ~~~-~~~l~fFi~Fl~~~Y~ 19 (110)
T PHA03066 1 ASS-LLYLLFFIIFLCISYY 19 (110)
T ss_pred Cch-HHHHHHHHHHHHHHHH
Confidence 444 6788888888877655
No 25
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.58 E-value=1.1e+02 Score=22.30 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=21.3
Q ss_pred EEEEEEEEEeceEeEEEEEEEeeCC
Q 037584 65 SVEKGETQVVSGTNYRLVVAAQDGT 89 (114)
Q Consensus 65 ~V~~a~~QVVaG~nY~l~v~~~~~~ 89 (114)
+....+-||..|-+|.+.+.+.+.+
T Consensus 45 ~~~~~~fqV~tGG~fDVD~~I~aPd 69 (209)
T KOG1693|consen 45 DTTSFEFQVQTGGHFDVDYDIEAPD 69 (209)
T ss_pred ceEEEEEEEEeCCceeeEEEEECCC
Confidence 5567788999999999999998764
No 26
>PTZ00334 trans-sialidase; Provisional
Probab=39.18 E-value=18 Score=31.48 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=14.4
Q ss_pred CcchhhHHHHHHHHHH-hhcc
Q 037584 1 MKGRCLYLALFLSTLL-LATG 20 (114)
Q Consensus 1 m~~~~~~l~~~~~~~~-~~~~ 20 (114)
|+|++|.-++++++++ .||.
T Consensus 39 MSRrvF~SAVLLLLVVMMCCg 59 (780)
T PTZ00334 39 MSRRVFTSAVLLLLVVMMCCG 59 (780)
T ss_pred cchhhHHHHHHHHhhheeeCC
Confidence 8999999888766544 3444
No 27
>CHL00020 psbN photosystem II protein N
Probab=38.80 E-value=34 Score=18.74 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHhhccccCCcccccee
Q 037584 6 LYLALFLSTLLLATGARTDAALVGGW 31 (114)
Q Consensus 6 ~~l~~~~~~~~~~~~~~~~~~~~GG~ 31 (114)
+++++|+.+++.+..+-.-....|-.
T Consensus 5 ~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 5 TLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred hhHHHHHHHHHHHhhheeeeeccCCc
Confidence 45668888887776554333333433
No 28
>PLN00115 pollen allergen group 3; Provisional
Probab=38.34 E-value=29 Score=23.06 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=16.0
Q ss_pred CcchhhHHHHHHHHHHhhccc
Q 037584 1 MKGRCLYLALFLSTLLLATGA 21 (114)
Q Consensus 1 m~~~~~~l~~~~~~~~~~~~~ 21 (114)
|+++.+||++.++++|.+.+.
T Consensus 1 ~~~~~~~~~~~~~a~l~~~~~ 21 (118)
T PLN00115 1 MSSLSFLLLAVALAALFAVGS 21 (118)
T ss_pred CchhHHHHHHHHHHHHhhhhh
Confidence 888878888888888777543
No 29
>TIGR03475 tap_IncFII_lead RepA leader peptide Tap. This protein is a translated leader peptide that actis in the regulation of the expression of the plasmid replication protein RepA in incF2 group plasmids.
Probab=37.74 E-value=40 Score=16.25 Aligned_cols=21 Identities=29% Similarity=0.189 Sum_probs=11.7
Q ss_pred CcchhhHHHHHHHHHHhhccc
Q 037584 1 MKGRCLYLALFLSTLLLATGA 21 (114)
Q Consensus 1 m~~~~~~l~~~~~~~~~~~~~ 21 (114)
|-|++=++.+--+++.|.+++
T Consensus 1 M~rKvQ~~FLc~~LL~cniSA 21 (26)
T TIGR03475 1 MLRKVQYLFLCHLLLPCNISA 21 (26)
T ss_pred CchhHHHHHHHHHHhhhcccc
Confidence 667766665544445555444
No 30
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=36.56 E-value=45 Score=18.52 Aligned_cols=26 Identities=27% Similarity=0.142 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHhhccccCCcccccee
Q 037584 6 LYLALFLSTLLLATGARTDAALVGGW 31 (114)
Q Consensus 6 ~~l~~~~~~~~~~~~~~~~~~~~GG~ 31 (114)
+++++++.+++++..+-.-....|-.
T Consensus 8 ~~~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 8 LSLAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred HHHHHHHHHHHHHHhhheeeeccCCc
Confidence 45667888887776554333334443
No 31
>PRK13792 lysozyme inhibitor; Provisional
Probab=36.43 E-value=24 Score=23.83 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=14.4
Q ss_pred CcchhhHHHHHHHHHHhhcccc
Q 037584 1 MKGRCLYLALFLSTLLLATGAR 22 (114)
Q Consensus 1 m~~~~~~l~~~~~~~~~~~~~~ 22 (114)
|...+|+|.+.+.++|.+|...
T Consensus 1 mk~~l~~ll~~~~~lLsaCs~~ 22 (127)
T PRK13792 1 MKKALWLLLAAVPVVLVACGGS 22 (127)
T ss_pred ChhHHHHHHHHHHhheecccCC
Confidence 7666666666666667666654
No 32
>PF12274 DUF3615: Protein of unknown function (DUF3615); InterPro: IPR022059 This domain family is found in bacteria and eukaryotes, and is typically between 86 and 97 amino acids in length. There is a conserved FAE sequence motif. There is a single completely conserved residue F that may be functionally important.
Probab=35.45 E-value=1.1e+02 Score=18.97 Aligned_cols=59 Identities=17% Similarity=0.224 Sum_probs=35.3
Q ss_pred HHhhC---CCceEEEEEEEEEEEEeceE--eEEEEEEEeeCC------CCceEEEEEEEecCCceEEEeE
Q 037584 53 YNKQS---KMELKFQSVEKGETQVVSGT--NYRLVVAAQDGT------ATNKYQAVVWENAKQIKKLTSF 111 (114)
Q Consensus 53 ~n~~~---~~~~~~~~V~~a~~QVVaG~--nY~l~v~~~~~~------~~~~~~~~V~~~p~~~~~l~sf 111 (114)
||+.. +..|++.+++....=.-.|. =|++.+.+...+ ....+=|+|.......+.+..+
T Consensus 1 Yn~~~~~~~~~yeL~~v~~~~~~~e~~~~~y~HvNF~A~~~~~~~~~~~~~LFFAE~~~~~~~~~~v~~C 70 (96)
T PF12274_consen 1 YNEDHPLLGLEYELVDVLHSCFIFERGGWNYYHVNFTAKTKGPDSDDGSPTLFFAEVSNDCKDEDDVSCC 70 (96)
T ss_pred CcccCCCCCcCEEEeEEEeeeeeEeCCCcEEEeEEEEEEcCCccCCCCCceEEEEEEecCCCCCCEEEEE
Confidence 45544 56789999887654333443 377888877543 4567778888222444444443
No 33
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=35.40 E-value=64 Score=20.86 Aligned_cols=31 Identities=13% Similarity=0.062 Sum_probs=24.6
Q ss_pred CCChHHHHHHHHHHHHHHhhCCC--ceEEEEEE
Q 037584 37 PNDPHVIEIGQFAVVEYNKQSKM--ELKFQSVE 67 (114)
Q Consensus 37 ~~d~~v~~~~~~Av~~~n~~~~~--~~~~~~V~ 67 (114)
.++...+++...|+.+|+-+..+ .|.+++|+
T Consensus 23 t~~~~a~~vV~eALeKygL~~e~p~~Y~LveV~ 55 (100)
T cd01781 23 SINDNADRIVGEALEKYGLEKSDPDDYCLVEVS 55 (100)
T ss_pred cCCccHHHHHHHHHHHhCCCccCccceEEEEEe
Confidence 35777889999999999887554 68888876
No 34
>COG5337 CotH Spore coat assembly protein [Cell envelope biogenesis, outer membrane]
Probab=34.78 E-value=19 Score=28.83 Aligned_cols=39 Identities=10% Similarity=0.049 Sum_probs=21.4
Q ss_pred CcchhhHHHHHHHHHHhhccccCCccccceeeeCCCCCChHHHHHHH
Q 037584 1 MKGRCLYLALFLSTLLLATGARTDAALVGGWKPIEDPNDPHVIEIGQ 47 (114)
Q Consensus 1 m~~~~~~l~~~~~~~~~~~~~~~~~~~~GG~~~i~~~~d~~v~~~~~ 47 (114)
|.||+|+.++..+.++. ...||.+-++=+++.++|.-+.
T Consensus 1 ~~rr~f~~~~~~iiav~--------~~~g~~~vvpy~s~~~~q~~~s 39 (473)
T COG5337 1 MNRRLFLGTSAAIIAVG--------GVLGGVQVVPYISSGEIQTSAS 39 (473)
T ss_pred CccchhHHHHHHHHHHh--------hcccceEEEEeecCcccccccc
Confidence 78998887655433433 2346655542345555555443
No 35
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=34.65 E-value=1.5e+02 Score=22.40 Aligned_cols=52 Identities=21% Similarity=0.107 Sum_probs=33.8
Q ss_pred CcchhhHHHHHHHHHHhhccccCCccccceeeeCCCCCChHHHHHHHHHHHHHH
Q 037584 1 MKGRCLYLALFLSTLLLATGARTDAALVGGWKPIEDPNDPHVIEIGQFAVVEYN 54 (114)
Q Consensus 1 m~~~~~~l~~~~~~~~~~~~~~~~~~~~GG~~~i~~~~d~~v~~~~~~Av~~~n 54 (114)
|.-+-+||++-..+++.+.++.......|=+.+ +.++|...++.+-.....+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~i~~--~~~~~f~~~~~~gi~~~a~ 52 (330)
T PRK10355 1 MKIKNILLTLCASLLLTSVAAHAKEVKIGMAID--DLRLERWQKDRDIFVKKAE 52 (330)
T ss_pred CchHHHHHHHHHHHHHhhccccCCCceEEEEec--CCCchHHHHHHHHHHHHHH
Confidence 556677888887777777666654444544444 6788888887664444443
No 36
>cd06247 M14_CPO Peptidase M14 carboxypeptidase (CP) O (CPO, also known as metallocarboxypeptidase C; EC 3.4.17.) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPO has not been well characterized as yet, and little is known about it. Based on modeling studies, CPO has been suggested to have specificity for acidic residues rather than aliphatic/aromatic residues as in A-like enzymes or basic residues as in B-like enzymes. It remains to be demonstrated that CPO is functional as an MCP.
Probab=34.28 E-value=57 Score=24.92 Aligned_cols=61 Identities=11% Similarity=0.116 Sum_probs=38.9
Q ss_pred cceeeeCCCCCChHHHHHHHHHHHHHHhhCCCceEEE---EEEE-------EEEEEeceEeEEEEEEEeeCC
Q 037584 28 VGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQ---SVEK-------GETQVVSGTNYRLVVAAQDGT 89 (114)
Q Consensus 28 ~GG~~~i~~~~d~~v~~~~~~Av~~~n~~~~~~~~~~---~V~~-------a~~QVVaG~nY~l~v~~~~~~ 89 (114)
|=|++.-..+|+++..++++.++.......+..|..- +++- =+.+ ..|..|.+++++.+.+
T Consensus 199 P~g~~~~~~~n~~~~~~~a~~~~~ai~~~~~~~y~~g~~~~~~y~a~G~s~Dwa~-~~~~~~s~t~El~~~g 269 (298)
T cd06247 199 PYGYTKEPSSNHEEMMLVAQKAAAALKEKHGTEYRVGSSALILYSNSGSSRDWAV-DIGIPFSYTFELRDNG 269 (298)
T ss_pred CCcCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCccCCcccccccCCCChhhhhh-ccCCCEEEEEEeCCCC
Confidence 3444442345778889999888888877766666542 1110 0122 2588999999998864
No 37
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=33.42 E-value=23 Score=19.61 Aligned_cols=16 Identities=44% Similarity=0.627 Sum_probs=8.8
Q ss_pred cchhhHHHHHHHHHHhh
Q 037584 2 KGRCLYLALFLSTLLLA 18 (114)
Q Consensus 2 ~~~~~~l~~~~~~~~~~ 18 (114)
..++||| .|++.+.++
T Consensus 4 KKsllLl-fflG~ISlS 19 (46)
T PF03032_consen 4 KKSLLLL-FFLGTISLS 19 (46)
T ss_pred hHHHHHH-HHHHHcccc
Confidence 3344444 667666555
No 38
>PF06157 DUF973: Protein of unknown function (DUF973); InterPro: IPR009321 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=31.92 E-value=70 Score=24.44 Aligned_cols=28 Identities=18% Similarity=0.385 Sum_probs=18.7
Q ss_pred EEeceEeEEEEEEEeeCCCCceEEEEEEEec
Q 037584 72 QVVSGTNYRLVVAAQDGTATNKYQAVVWENA 102 (114)
Q Consensus 72 QVVaG~nY~l~v~~~~~~~~~~~~~~V~~~p 102 (114)
+.+.|.+|.+++.+.++. ..++.|-.+|
T Consensus 258 ~l~~g~~Y~i~l~l~ng~---~v~v~~~y~p 285 (285)
T PF06157_consen 258 NLVPGNTYTITLTLSNGQ---TVDVNVIYQP 285 (285)
T ss_pred cCCCCCEEEEEEEEcCCc---EEEEEEEEeC
Confidence 456777788888888765 5666555544
No 39
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=31.47 E-value=84 Score=21.46 Aligned_cols=39 Identities=23% Similarity=0.207 Sum_probs=22.3
Q ss_pred hhccccCCccccceeee------------C-CCCCChHHHHHHHHHHHHHHh
Q 037584 17 LATGARTDAALVGGWKP------------I-EDPNDPHVIEIGQFAVVEYNK 55 (114)
Q Consensus 17 ~~~~~~~~~~~~GG~~~------------i-~~~~d~~v~~~~~~Av~~~n~ 55 (114)
.+|+......+.|-+.+ | .+.+||+..++...|.+.+|.
T Consensus 23 ~~c~~~~~~~Ltg~Y~~DT~~Vi~tlr~~i~lpkd~p~~~~a~~~ar~~ind 74 (135)
T TIGR03044 23 TACSGAAKTRLTGDYVEDTLAVIQTLREAIDLPDDDPNKSEAQAEARQLIND 74 (135)
T ss_pred hcccCCCcccccchHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHH
Confidence 34443335667777532 1 134677777766666666665
No 40
>PF08048 RepA1_leader: Tap RepA1 leader peptide; InterPro: IPR012605 This entry represents of the RepA1 leader peptide known as Tap found in IncFII plasmids. The frequency of replication of IncFII plasmid NR1 during the cell division cycle is regulated by the control of the synthesis of the plasmid-specific replication initiation protein (RepA1). When RepA1 is synthesised, it binds to the plasmid replication origin (ori) and effects the assembly of a replication complex composed of host proteins that mediate the replication of the plasmid [, ]. The tap gene encodes a 24-amino acid peptide whose translation is required for the translation of repA.
Probab=31.05 E-value=66 Score=15.34 Aligned_cols=21 Identities=29% Similarity=0.189 Sum_probs=10.8
Q ss_pred CcchhhHHHHHHHHHHhhccc
Q 037584 1 MKGRCLYLALFLSTLLLATGA 21 (114)
Q Consensus 1 m~~~~~~l~~~~~~~~~~~~~ 21 (114)
|-|++=++.+--+++.|.+++
T Consensus 1 MlrK~Q~~FLc~lLL~CniSA 21 (25)
T PF08048_consen 1 MLRKVQYLFLCHLLLPCNISA 21 (25)
T ss_pred CchhHHHHHHHHHHhhhhccc
Confidence 667765554444444444443
No 41
>CHL00132 psaF photosystem I subunit III; Validated
Probab=30.18 E-value=1.7e+02 Score=21.00 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=17.5
Q ss_pred ccccceeeeCCCCCChHHHHHHHHHHHH
Q 037584 25 AALVGGWKPIEDPNDPHVIEIGQFAVVE 52 (114)
Q Consensus 25 ~~~~GG~~~i~~~~d~~v~~~~~~Av~~ 52 (114)
..-.+|.+| . .++|.+++-+..++.+
T Consensus 23 ~ad~agLtp-C-ses~aF~kR~~~~~k~ 48 (185)
T CHL00132 23 FADVAGLTP-C-SESPAFQKRLNNSVKK 48 (185)
T ss_pred cccccCCcc-C-ccCHHHHHHHHHHHHH
Confidence 345678888 4 5678888777666654
No 42
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=28.73 E-value=76 Score=19.75 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=13.0
Q ss_pred CcchhhHHHHHHHHHHhhcc
Q 037584 1 MKGRCLYLALFLSTLLLATG 20 (114)
Q Consensus 1 m~~~~~~l~~~~~~~~~~~~ 20 (114)
||.+.+=|+++++++++...
T Consensus 1 MAvSvLrltivlGLlvLIlt 20 (88)
T PF15144_consen 1 MAVSVLRLTIVLGLLVLILT 20 (88)
T ss_pred CchHHHHHHHHHHHHHHHhh
Confidence 77777777777666654433
No 43
>COG1638 DctP TRAP-type C4-dicarboxylate transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=28.36 E-value=1.9e+02 Score=22.40 Aligned_cols=60 Identities=28% Similarity=0.285 Sum_probs=29.1
Q ss_pred cchhhHHHHHHHHHHhh-ccccCCccccceeeeCCCCCChHHHHHHHHHHHHHHhhCCCceEE
Q 037584 2 KGRCLYLALFLSTLLLA-TGARTDAALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKF 63 (114)
Q Consensus 2 ~~~~~~l~~~~~~~~~~-~~~~~~~~~~GG~~~i~~~~d~~v~~~~~~Av~~~n~~~~~~~~~ 63 (114)
..+.+.+++++.++.++ +.+. .....=.+....+.++|..+.+..|| +..+++++.++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~a~-~~~~~l~~~~~~~~~~p~~~~~~~fa-~~v~ekt~G~l~i 63 (332)
T COG1638 3 KLLALLLALLLAAAALASAAAA-AGALVLRFSHVTPEGHPKGKAAKKFA-ELVEEKTGGRLKI 63 (332)
T ss_pred chHHHHHHHHHHHHHHhhHHHh-hhceEEeecccCCCCCcHHHHHHHHH-HHHHHHhCCeEEE
Confidence 44555555554333332 2222 22233333332234677776665544 4556677776644
No 44
>TIGR02105 III_needle type III secretion apparatus needle protein. Type III secretion systems translocate proteins, usually virulence factors, out across both inner and outer membranes of certain Gram-negative bacteria and further across the plasma membrane and into the cytoplasm of the host cell. This protein, termed YscF in Yersinia, and EscF, PscF, EprI, etc. in other systems, forms the needle of the injection apparatus.
Probab=27.26 E-value=93 Score=18.79 Aligned_cols=21 Identities=38% Similarity=0.592 Sum_probs=17.7
Q ss_pred CCCChHHHHHHHHHHHHHHhh
Q 037584 36 DPNDPHVIEIGQFAVVEYNKQ 56 (114)
Q Consensus 36 ~~~d~~v~~~~~~Av~~~n~~ 56 (114)
+++||+.---.+|++.+||--
T Consensus 30 ~~~nP~~La~~Q~~~~qYs~~ 50 (72)
T TIGR02105 30 LPNDPELMAELQFALNQYSAY 50 (72)
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 578999888889999999863
No 45
>PHA02291 hypothetical protein
Probab=27.05 E-value=59 Score=21.51 Aligned_cols=16 Identities=13% Similarity=0.349 Sum_probs=10.1
Q ss_pred Ccc--hhhHHHHHHHHHH
Q 037584 1 MKG--RCLYLALFLSTLL 16 (114)
Q Consensus 1 m~~--~~~~l~~~~~~~~ 16 (114)
|+| .+||+.+|++++.
T Consensus 1 MS~K~~iFYiL~~~VL~~ 18 (132)
T PHA02291 1 MSRKASIFYILVVIVLAF 18 (132)
T ss_pred CCcchhhHHHHHHHHHHH
Confidence 766 4777767765543
No 46
>PRK14744 leu operon leader peptide; Provisional
Probab=26.80 E-value=31 Score=16.87 Aligned_cols=9 Identities=33% Similarity=0.505 Sum_probs=6.0
Q ss_pred Cccccceee
Q 037584 24 DAALVGGWK 32 (114)
Q Consensus 24 ~~~~~GG~~ 32 (114)
++.++||.+
T Consensus 19 RGR~v~giQ 27 (28)
T PRK14744 19 RGRPVGGIQ 27 (28)
T ss_pred cCccccccc
Confidence 566777765
No 47
>PRK15344 type III secretion system needle protein SsaG; Provisional
Probab=26.38 E-value=1.1e+02 Score=18.55 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=17.2
Q ss_pred CCCCChHHHHHHHHHHHHHHh
Q 037584 35 EDPNDPHVIEIGQFAVVEYNK 55 (114)
Q Consensus 35 ~~~~d~~v~~~~~~Av~~~n~ 55 (114)
.+++||+.---++|++.+|+.
T Consensus 28 ~~~~nP~~ml~lQf~i~QyS~ 48 (71)
T PRK15344 28 NDLLNPESMIKAQFALQQYST 48 (71)
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 367889987778999999875
No 48
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=26.27 E-value=63 Score=18.41 Aligned_cols=7 Identities=57% Similarity=1.393 Sum_probs=5.4
Q ss_pred ccceeee
Q 037584 27 LVGGWKP 33 (114)
Q Consensus 27 ~~GG~~~ 33 (114)
-+|-|+|
T Consensus 32 NVgrWqp 38 (55)
T PRK13859 32 NVGRWQP 38 (55)
T ss_pred ccccccC
Confidence 4688988
No 49
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=26.19 E-value=40 Score=22.24 Aligned_cols=6 Identities=17% Similarity=0.224 Sum_probs=2.2
Q ss_pred HHHhhc
Q 037584 14 TLLLAT 19 (114)
Q Consensus 14 ~~~~~~ 19 (114)
++++++
T Consensus 16 ~~~~~~ 21 (130)
T PF12273_consen 16 LFLFYC 21 (130)
T ss_pred HHHHHH
Confidence 333333
No 50
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=25.92 E-value=2.1e+02 Score=19.88 Aligned_cols=20 Identities=10% Similarity=0.042 Sum_probs=11.7
Q ss_pred CCChHHHHHHHHHHHHHHhh
Q 037584 37 PNDPHVIEIGQFAVVEYNKQ 56 (114)
Q Consensus 37 ~~d~~v~~~~~~Av~~~n~~ 56 (114)
++.+.-+.++.-++++.-+.
T Consensus 28 ~s~~~a~~iA~D~v~qL~~~ 47 (151)
T PRK13883 28 ASAADQQKLATDAVQQLATL 47 (151)
T ss_pred cCHHHHHHHHHHHHHHHHHh
Confidence 45566666666666665443
No 51
>PRK09810 entericidin A; Provisional
Probab=24.88 E-value=76 Score=17.15 Aligned_cols=18 Identities=39% Similarity=0.486 Sum_probs=7.2
Q ss_pred hhhHHHHHHHHHHhhccc
Q 037584 4 RCLYLALFLSTLLLATGA 21 (114)
Q Consensus 4 ~~~~l~~~~~~~~~~~~~ 21 (114)
+++.+.++..+++.+|..
T Consensus 4 k~~~l~~~~~~~L~aCNT 21 (41)
T PRK09810 4 RLIVLVLLASTLLTGCNT 21 (41)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 333333443334444443
No 52
>PF15240 Pro-rich: Proline-rich
Probab=24.88 E-value=50 Score=23.63 Aligned_cols=8 Identities=25% Similarity=0.372 Sum_probs=3.1
Q ss_pred hhHHHHHH
Q 037584 5 CLYLALFL 12 (114)
Q Consensus 5 ~~~l~~~~ 12 (114)
|+||++.|
T Consensus 3 lVLLSvAL 10 (179)
T PF15240_consen 3 LVLLSVAL 10 (179)
T ss_pred hHHHHHHH
Confidence 34443333
No 53
>PRK13681 hypothetical protein; Provisional
Probab=24.82 E-value=66 Score=16.76 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=13.8
Q ss_pred hhhHHHHHHHHHHhhccccCCccccceee
Q 037584 4 RCLYLALFLSTLLLATGARTDAALVGGWK 32 (114)
Q Consensus 4 ~~~~l~~~~~~~~~~~~~~~~~~~~GG~~ 32 (114)
|.++.++|.++++.+. ...+.-|++
T Consensus 5 K~~~i~lfalmAiGgi----gGvmLaGy~ 29 (35)
T PRK13681 5 KIGVIALFLLMAIGGI----GGVMLAGYT 29 (35)
T ss_pred HHHHHHHHHHHHhcCc----cceeeeeeE
Confidence 5666777765555442 234455554
No 54
>PF10572 UPF0556: Uncharacterised protein family UPF0556; InterPro: IPR018887 This family of proteins has no known function.
Probab=24.69 E-value=2.4e+02 Score=19.74 Aligned_cols=36 Identities=25% Similarity=0.621 Sum_probs=21.8
Q ss_pred ceEe--EEEEEEEeeCCCCceEEEEEEEec-CCceEEEeEE
Q 037584 75 SGTN--YRLVVAAQDGTATNKYQAVVWENA-KQIKKLTSFH 112 (114)
Q Consensus 75 aG~n--Y~l~v~~~~~~~~~~~~~~V~~~p-~~~~~l~sf~ 112 (114)
.|+| ..|.+-+.+ +...|.|.||+.. ....-.+.|+
T Consensus 56 GGTNEqW~msi~~s~--d~~~~sC~I~RPqgkSYL~F~qFk 94 (158)
T PF10572_consen 56 GGTNEQWQMSIGLSD--DNGHYSCIIWRPQGKSYLFFTQFK 94 (158)
T ss_pred CCccceEEEEeeecC--CCCceEEEEECCCCCcEEEEEEEE
Confidence 7776 445555443 3458888899854 4445455554
No 55
>PRK15396 murein lipoprotein; Provisional
Probab=24.25 E-value=76 Score=19.52 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=10.2
Q ss_pred CcchhhHHHHHHH-H-HHhhccc
Q 037584 1 MKGRCLYLALFLS-T-LLLATGA 21 (114)
Q Consensus 1 m~~~~~~l~~~~~-~-~~~~~~~ 21 (114)
|.++.++++.+++ + +|..|+.
T Consensus 1 m~~~kl~l~av~ls~~LLaGCAs 23 (78)
T PRK15396 1 MNRTKLVLGAVILGSTLLAGCSS 23 (78)
T ss_pred CchhHHHHHHHHHHHHHHHHcCC
Confidence 7775444444443 3 3444444
No 56
>PRK14758 hypothetical protein; Provisional
Probab=24.09 E-value=83 Score=15.35 Aligned_cols=11 Identities=27% Similarity=0.492 Sum_probs=5.5
Q ss_pred HHHHHHHHHhh
Q 037584 8 LALFLSTLLLA 18 (114)
Q Consensus 8 l~~~~~~~~~~ 18 (114)
|.++++|++.+
T Consensus 11 LivlIlCalia 21 (27)
T PRK14758 11 LIILILCALIA 21 (27)
T ss_pred HHHHHHHHHHH
Confidence 33455555544
No 57
>PF02995 DUF229: Protein of unknown function (DUF229); InterPro: IPR004245 Members of this family are uncharacterised with a long conserved region that may contain several domains.
Probab=24.03 E-value=91 Score=25.49 Aligned_cols=29 Identities=38% Similarity=0.571 Sum_probs=24.9
Q ss_pred ccceeeeCCCCCChHHHHHHHHHHHHHHhh
Q 037584 27 LVGGWKPIEDPNDPHVIEIGQFAVVEYNKQ 56 (114)
Q Consensus 27 ~~GG~~~i~~~~d~~v~~~~~~Av~~~n~~ 56 (114)
.|.+|.++ +.+++.++.+|++++.+.|+.
T Consensus 450 ~C~~~~~~-~~~~~~~~~~a~~~v~~iN~~ 478 (497)
T PF02995_consen 450 TCEGWKTI-PTNDSLVQRIAKFLVDHINEY 478 (497)
T ss_pred cCcCcccc-ccCcHHHHHHHHHHHHHHHHH
Confidence 45778884 788889999999999999985
No 58
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=23.56 E-value=84 Score=19.71 Aligned_cols=21 Identities=33% Similarity=0.170 Sum_probs=12.5
Q ss_pred CcchhhHHHHHHHH-HHhhccc
Q 037584 1 MKGRCLYLALFLST-LLLATGA 21 (114)
Q Consensus 1 m~~~~~~l~~~~~~-~~~~~~~ 21 (114)
|..++++-++.+.. +|..|+.
T Consensus 1 mk~klll~aviLs~~LLaGCAs 22 (85)
T PRK09973 1 MKTIFTVGAVVLATCLLSGCVN 22 (85)
T ss_pred CchhHHHHHHHHHHHHHHHcCC
Confidence 66777777666633 4455554
No 59
>cd03870 M14_CPA Peptidase M14 Carboxypeptidase (CP) A (CPA) belongs to the A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA enzymes generally favor hydrophobic residues. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase A (PCPA) is produced by the exocrine pancreas and stored as a stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. This subfamily includes CPA1, CPA2 and CPA4 forms. Within these A forms, there are slightly different specificities, with CPA1 preferring aliphatic and small aromatic residues, and CPA2 p
Probab=23.39 E-value=2e+02 Score=21.96 Aligned_cols=61 Identities=16% Similarity=0.228 Sum_probs=36.6
Q ss_pred ceeeeCCCCCChHHHHHHHHHHHHHHhhCCCceEEEEEEEEEEEE---------eceEeEEEEEEEeeCC
Q 037584 29 GGWKPIEDPNDPHVIEIGQFAVVEYNKQSKMELKFQSVEKGETQV---------VSGTNYRLVVAAQDGT 89 (114)
Q Consensus 29 GG~~~i~~~~d~~v~~~~~~Av~~~n~~~~~~~~~~~V~~a~~QV---------VaG~nY~l~v~~~~~~ 89 (114)
=|++.-..+++++.+++++.+...+...++..|..-..-...... ..|..|.+++++.+++
T Consensus 200 ~~~~~~~~~~~~~~~~la~~~~~ai~~~~g~~y~~g~~~~~~y~a~G~s~Dw~y~~~~~~s~t~El~~~g 269 (301)
T cd03870 200 YGYTTQSIPDKTELNQVAKSAVAALKSLYGTSYKYGSIITTIYQASGGSIDWSYNQGIKYSFTFELRDTG 269 (301)
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHHhcCCccccccccceeecCCCChhhhhhcCCCcEEEEEEeCCCC
Confidence 344432235677788888888887777666666542211111000 1477899999998864
No 60
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=22.34 E-value=2.7e+02 Score=19.20 Aligned_cols=20 Identities=20% Similarity=0.144 Sum_probs=13.9
Q ss_pred CCChHHHHHHHHHHHHHHhh
Q 037584 37 PNDPHVIEIGQFAVVEYNKQ 56 (114)
Q Consensus 37 ~~d~~v~~~~~~Av~~~n~~ 56 (114)
.+.|.-+.++.-++++.-+.
T Consensus 34 ~t~~aa~~iA~D~vsqLae~ 53 (145)
T PRK13835 34 LSGPAASAIAGDMVSRLAEQ 53 (145)
T ss_pred hcchHHHHHHHHHHHHHHHh
Confidence 34566777788888777654
No 61
>PHA02770 hypothetical protein; Provisional
Probab=22.30 E-value=1.9e+02 Score=17.32 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=14.6
Q ss_pred EeceEeEEEEEEEeeCC
Q 037584 73 VVSGTNYRLVVAAQDGT 89 (114)
Q Consensus 73 VVaG~nY~l~v~~~~~~ 89 (114)
-++|..|++++....++
T Consensus 47 ei~~~hyrfelifskdn 63 (81)
T PHA02770 47 EVNGRHYRFELIFSKDN 63 (81)
T ss_pred EEcCceEEEEEEEecCC
Confidence 36899999999998876
No 62
>PF14201 DUF4318: Domain of unknown function (DUF4318)
Probab=22.16 E-value=2e+02 Score=17.49 Aligned_cols=43 Identities=21% Similarity=0.199 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhCCCceEEEEEEE-EEEEEeceEeEEEEE---EEeeCC
Q 037584 46 GQFAVVEYNKQSKMELKFQSVEK-GETQVVSGTNYRLVV---AAQDGT 89 (114)
Q Consensus 46 ~~~Av~~~n~~~~~~~~~~~V~~-a~~QVVaG~nY~l~v---~~~~~~ 89 (114)
...|+.+|=.+++.++.|++=.+ +. =-..|.+|.+++ .+.+++
T Consensus 20 i~~aIE~YC~~~~~~l~Fisr~~Pi~-~~idg~lYev~i~~~~~~rgg 66 (74)
T PF14201_consen 20 ICEAIEKYCIKNGESLEFISRDKPIT-FKIDGVLYEVEIDEEYMARGG 66 (74)
T ss_pred HHHHHHHHHHHcCCceEEEecCCcEE-EEECCeEEEEEEEeeecccCc
Confidence 34688899888888898853222 22 124788999988 555554
No 63
>PF10913 DUF2706: Protein of unknown function (DUF2706); InterPro: IPR024444 This family of proteins with unknown function appears to be restricted to Rickettsia spp.
Probab=22.14 E-value=1.5e+02 Score=16.97 Aligned_cols=16 Identities=25% Similarity=0.389 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHhhccc
Q 037584 6 LYLALFLSTLLLATGA 21 (114)
Q Consensus 6 ~~l~~~~~~~~~~~~~ 21 (114)
|+|-++|++-+++|.-
T Consensus 7 f~lv~imlaqllsctp 22 (60)
T PF10913_consen 7 FLLVLIMLAQLLSCTP 22 (60)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 4444556666776553
No 64
>PF14940 TMEM219: Transmembrane 219
Probab=20.55 E-value=1.1e+02 Score=22.57 Aligned_cols=28 Identities=7% Similarity=0.151 Sum_probs=16.7
Q ss_pred cceeeeCCCCCChHHHHHHHHHHHHHHh
Q 037584 28 VGGWKPIEDPNDPHVIEIGQFAVVEYNK 55 (114)
Q Consensus 28 ~GG~~~i~~~~d~~v~~~~~~Av~~~n~ 55 (114)
.|++....+..||++.+-=+.-+..+++
T Consensus 28 Lg~yi~~~~l~nPDi~~DWN~fL~~ls~ 55 (223)
T PF14940_consen 28 LGYYIKRNELKNPDIPQDWNTFLLSLSQ 55 (223)
T ss_pred eeeEecccCCCcccchhhHHHHHHhhcC
Confidence 5666665567888886543444444443
No 65
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=20.43 E-value=98 Score=23.69 Aligned_cols=20 Identities=10% Similarity=0.255 Sum_probs=15.4
Q ss_pred EEEEeceEeEEEEEEEeeCC
Q 037584 70 ETQVVSGTNYRLVVAAQDGT 89 (114)
Q Consensus 70 ~~QVVaG~nY~l~v~~~~~~ 89 (114)
...+++|.--++.+-+.+.+
T Consensus 92 ~~~l~aG~~~~~LvgftN~g 111 (285)
T PF03896_consen 92 TKKLPAGEPVKFLVGFTNKG 111 (285)
T ss_pred cccccCCCeEEEEEEEEeCC
Confidence 45688998888888887766
No 66
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=20.43 E-value=1.8e+02 Score=22.12 Aligned_cols=28 Identities=14% Similarity=-0.086 Sum_probs=21.1
Q ss_pred ccccceeeeCCCCCChHHHHHHHHHHHHHHhhC
Q 037584 25 AALVGGWKPIEDPNDPHVIEIGQFAVVEYNKQS 57 (114)
Q Consensus 25 ~~~~GG~~~i~~~~d~~v~~~~~~Av~~~n~~~ 57 (114)
.-..|+..+. ...+...++|++.+|.+.
T Consensus 19 ~i~IG~i~~~-----~~~~~~~~~Ai~~~N~~~ 46 (377)
T cd06379 19 TVNIGAVLSN-----KKHEQEFKEAVNAANVER 46 (377)
T ss_pred EEEEeEEecc-----hhHHHHHHHHHHHHhhhh
Confidence 4457888872 357888999999999853
Done!