BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037586
         (110 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A4D0S4|LAMB4_HUMAN Laminin subunit beta-4 OS=Homo sapiens GN=LAMB4 PE=2 SV=1
          Length = 1761

 Score = 32.3 bits (72), Expect = 0.90,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 20/122 (16%)

Query: 8    MKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTE------------------ 49
            +  L++++   +D A    V+ ++      SLE + V  K +                  
Sbjct: 1631 LSLLQTKLQRHQDHAVNAKVQAESAQHQAGSLEKEFVELKKQYAILQRKTSTTGLTKETL 1690

Query: 50   --TKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTLELITQERVSISSKLV 107
               K+ K+ AEK+  +      +I + +RKI  L       +  L ++  + V+I +++V
Sbjct: 1691 GKVKQLKDAAEKLAGDTEAKIRRITDLERKIQDLNLSRQAKADQLRILEDQVVAIKNEIV 1750

Query: 108  EK 109
            E+
Sbjct: 1751 EQ 1752


>sp|Q9FG91|DRL32_ARATH Probable disease resistance protein At5g43730 OS=Arabidopsis
          thaliana GN=At5g43730 PE=2 SV=1
          Length = 848

 Score = 30.8 bits (68), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 31/60 (51%)

Query: 9  KTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQIC 68
          KT+    N  +D  A+VS+EE   +  +  +   L   +    +FK+  E M++E G++C
Sbjct: 40 KTMEELKNGRDDLLARVSIEEDKGLQRLALVNGWLSRVQIVESEFKDLLEAMSIETGRLC 99


>sp|O29043|Y1225_ARCFU Uncharacterized protein AF_1225 OS=Archaeoglobus fulgidus (strain
           ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
           GN=AF_1225 PE=4 SV=1
          Length = 212

 Score = 30.8 bits (68), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 35/53 (66%)

Query: 8   MKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKM 60
           ++TL+SQ+ D++++A  + ++ + Q   I+ L+  L  AKTE +K K D +++
Sbjct: 121 IETLKSQLEDLQNKAKMLGIQNELQKQQIEELQKKLERAKTELQKKKSDLDEL 173


>sp|Q9UBC2|EP15R_HUMAN Epidermal growth factor receptor substrate 15-like 1 OS=Homo
           sapiens GN=EPS15L1 PE=1 SV=1
          Length = 864

 Score = 30.4 bits (67), Expect = 3.6,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 3/103 (2%)

Query: 1   MEEYLQYMKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKM 60
           ++E  Q    LR  ++DV  +    +    +  + IQS E+DL S + +  + K +  ++
Sbjct: 449 LDEMDQQKAKLRDMLSDVRQKCQDETQMISSLKTQIQSQESDLKSQEDDLNRAKSELNRL 508

Query: 61  TMEKGQICAQILEKQRKIASLESDSSTLSQTLELITQERVSIS 103
             E+ Q+   I   Q     LE+   +L  T + I Q R  +S
Sbjct: 509 QQEETQLEQSI---QAGRVQLETIIKSLKSTQDEINQARSKLS 548


>sp|Q9FG90|DRL33_ARATH Probable disease resistance protein At5g43740 OS=Arabidopsis
          thaliana GN=At5g43740 PE=2 SV=1
          Length = 862

 Score = 30.0 bits (66), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 9  KTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQIC 68
          KT+    N  +D   +VS+EE   +  +  +   L   +    +FK+  E M++E G++C
Sbjct: 39 KTMEELKNGRDDLLGRVSIEEDKGLQRLAQVNGWLSRVQIVESEFKDLLEAMSIETGRLC 98


>sp|Q54CS9|RAD50_DICDI DNA repair protein RAD50 OS=Dictyostelium discoideum GN=rad50 PE=3
            SV=1
          Length = 1351

 Score = 30.0 bits (66), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 6/54 (11%)

Query: 62   MEKGQICAQILEKQRKIASLESDSSTLSQTLELITQERVS-----ISSKLVEKR 110
            ++  ++C Q+ E Q K   LES+ STLSQ   LI Q+ +S     +SSK + KR
Sbjct: 1013 LDPSELCKQLNEIQEKNQELESNLSTLSQDY-LIGQQHISTIQQNLSSKDITKR 1065


>sp|Q5TZA2|CROCC_HUMAN Rootletin OS=Homo sapiens GN=CROCC PE=1 SV=1
          Length = 2017

 Score = 28.9 bits (63), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 26/41 (63%)

Query: 43  LVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLES 83
           LV+A+ E +   E+A ++ +EK  +   + E QR++A LE+
Sbjct: 885 LVAAEREGRTLSEEATRLRLEKEALEGSLFEVQRQLAQLEA 925


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.304    0.118    0.280 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,323,565
Number of Sequences: 539616
Number of extensions: 849125
Number of successful extensions: 5864
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 347
Number of HSP's that attempted gapping in prelim test: 5218
Number of HSP's gapped (non-prelim): 997
length of query: 110
length of database: 191,569,459
effective HSP length: 78
effective length of query: 32
effective length of database: 149,479,411
effective search space: 4783341152
effective search space used: 4783341152
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 55 (25.8 bits)