Query 037586
Match_columns 110
No_of_seqs 8 out of 10
Neff 2.1
Searched_HMMs 46136
Date Fri Mar 29 02:27:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037586.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037586hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10473 CENP-F_leu_zip: Leuci 96.2 0.2 4.4E-06 37.4 11.8 93 7-99 25-117 (140)
2 PF08172 CASP_C: CASP C termin 95.5 0.046 9.9E-07 43.5 6.2 94 16-109 2-129 (248)
3 COG1579 Zn-ribbon protein, pos 94.4 0.47 1E-05 38.2 9.3 83 7-94 67-149 (239)
4 TIGR02168 SMC_prok_B chromosom 92.8 4.3 9.4E-05 35.1 12.7 6 39-44 293-298 (1179)
5 TIGR02168 SMC_prok_B chromosom 92.7 5.2 0.00011 34.6 13.1 16 40-55 725-740 (1179)
6 TIGR02169 SMC_prok_A chromosom 92.4 4.8 0.0001 35.2 12.7 17 42-58 400-416 (1164)
7 TIGR02169 SMC_prok_A chromosom 92.1 6.6 0.00014 34.4 13.1 34 53-86 404-437 (1164)
8 PF04111 APG6: Autophagy prote 89.5 8.2 0.00018 31.4 10.8 100 3-102 27-132 (314)
9 PF13851 GAS: Growth-arrest sp 89.4 8.2 0.00018 29.6 12.0 99 5-107 26-131 (201)
10 PF00038 Filament: Intermediat 89.0 8.8 0.00019 29.5 10.7 88 3-90 51-138 (312)
11 smart00150 SPEC Spectrin repea 88.9 3.5 7.7E-05 24.8 7.0 61 3-63 2-67 (101)
12 PF05278 PEARLI-4: Arabidopsis 88.7 8 0.00017 32.1 10.3 63 35-97 194-256 (269)
13 PF00435 Spectrin: Spectrin re 87.8 4.3 9.2E-05 24.4 10.0 63 1-63 3-70 (105)
14 COG1196 Smc Chromosome segrega 87.0 18 0.00039 33.8 12.5 76 5-81 266-342 (1163)
15 PRK11637 AmiB activator; Provi 87.0 7.7 0.00017 31.8 9.2 17 36-52 77-93 (428)
16 PRK10884 SH3 domain-containing 86.9 6 0.00013 30.8 8.2 33 74-106 130-162 (206)
17 KOG0250 DNA repair protein RAD 86.0 20 0.00044 34.9 12.6 43 6-48 309-351 (1074)
18 PF09602 PhaP_Bmeg: Polyhydrox 85.8 15 0.00033 28.7 12.3 106 3-108 16-132 (165)
19 PRK02224 chromosome segregatio 84.8 27 0.00058 30.7 12.2 23 71-93 594-616 (880)
20 PF00261 Tropomyosin: Tropomyo 84.6 9.4 0.0002 29.3 8.2 61 2-62 172-232 (237)
21 COG1196 Smc Chromosome segrega 84.0 26 0.00056 32.8 12.0 94 6-99 758-858 (1163)
22 PRK02224 chromosome segregatio 83.5 31 0.00066 30.4 11.8 34 69-102 412-445 (880)
23 PF11932 DUF3450: Protein of u 82.8 19 0.00042 27.6 9.8 58 35-92 43-100 (251)
24 PF09730 BicD: Microtubule-ass 80.1 10 0.00022 35.1 7.9 60 29-100 109-170 (717)
25 PF00804 Syntaxin: Syntaxin; 79.8 12 0.00027 23.4 6.2 31 1-31 2-32 (103)
26 PF12718 Tropomyosin_1: Tropom 78.5 23 0.00051 25.9 11.8 87 5-95 13-99 (143)
27 PF07106 TBPIP: Tat binding pr 77.4 8.3 0.00018 27.9 5.4 29 73-101 113-141 (169)
28 TIGR02132 phaR_Bmeg polyhydrox 77.1 12 0.00026 30.1 6.7 46 35-80 108-175 (189)
29 PF10186 Atg14: UV radiation r 76.6 26 0.00056 26.0 8.0 24 66-89 81-104 (302)
30 PRK04863 mukB cell division pr 76.4 71 0.0015 31.8 12.8 30 69-98 449-478 (1486)
31 PF05266 DUF724: Protein of un 75.7 34 0.00075 26.3 10.8 56 47-102 130-185 (190)
32 PF08831 MHCassoc_trimer: Clas 74.8 2.3 5E-05 29.5 1.9 20 2-21 25-44 (72)
33 TIGR02231 conserved hypothetic 73.5 51 0.0011 27.8 9.8 97 7-103 72-172 (525)
34 PF07544 Med9: RNA polymerase 72.7 6.8 0.00015 26.3 3.7 46 7-56 36-81 (83)
35 PF14662 CCDC155: Coiled-coil 72.4 48 0.001 26.5 8.9 72 7-78 68-139 (193)
36 PF12925 APP_E2: E2 domain of 71.4 37 0.0008 26.9 8.0 69 30-101 37-106 (193)
37 cd00193 t_SNARE Soluble NSF (N 70.9 17 0.00038 20.8 6.9 55 1-55 1-55 (60)
38 KOG0999 Microtubule-associated 70.7 21 0.00046 33.5 7.5 60 30-101 183-244 (772)
39 PF05667 DUF812: Protein of un 70.7 26 0.00057 31.4 7.9 68 30-97 324-391 (594)
40 PF13815 Dzip-like_N: Iguana/D 70.2 24 0.00053 24.6 6.2 22 3-24 69-91 (118)
41 PF00769 ERM: Ezrin/radixin/mo 69.5 53 0.0012 25.8 10.4 77 11-87 10-100 (246)
42 KOG0250 DNA repair protein RAD 68.2 1.1E+02 0.0023 30.3 11.7 100 3-102 341-441 (1074)
43 TIGR00606 rad50 rad50. This fa 68.1 41 0.00089 31.9 8.9 63 4-71 797-859 (1311)
44 PRK09039 hypothetical protein; 66.4 73 0.0016 26.2 11.1 37 70-106 138-174 (343)
45 PF02646 RmuC: RmuC family; I 64.2 41 0.0009 26.9 7.1 67 8-75 15-81 (304)
46 PF04420 CHD5: CHD5-like prote 63.5 13 0.00028 27.4 3.9 34 3-37 64-97 (161)
47 KOG1962 B-cell receptor-associ 63.2 79 0.0017 25.5 9.0 53 37-89 154-206 (216)
48 smart00397 t_SNARE Helical reg 61.1 30 0.00065 20.0 6.6 53 2-54 8-60 (66)
49 PF05739 SNARE: SNARE domain; 59.4 36 0.00078 20.3 8.0 56 7-62 5-60 (63)
50 PF09325 Vps5: Vps5 C terminal 58.5 69 0.0015 23.3 7.9 56 34-103 135-190 (236)
51 TIGR00606 rad50 rad50. This fa 58.3 1.7E+02 0.0038 27.9 12.2 28 36-63 986-1013(1311)
52 KOG4674 Uncharacterized conser 58.3 1.8E+02 0.0038 30.3 11.6 108 1-108 68-203 (1822)
53 PF08317 Spc7: Spc7 kinetochor 57.2 1E+02 0.0022 24.8 12.4 29 70-98 224-252 (325)
54 PF04136 Sec34: Sec34-like fam 57.1 77 0.0017 23.4 9.3 58 2-66 3-60 (157)
55 KOG0964 Structural maintenance 56.7 1.9E+02 0.0041 29.0 11.1 96 5-100 670-772 (1200)
56 TIGR03752 conj_TIGR03752 integ 55.2 1.5E+02 0.0032 26.7 9.6 31 48-78 109-139 (472)
57 PF11559 ADIP: Afadin- and alp 55.1 72 0.0016 22.5 8.6 48 34-81 59-106 (151)
58 COG4942 Membrane-bound metallo 55.1 1.5E+02 0.0033 26.2 12.3 29 70-98 204-232 (420)
59 PF11932 DUF3450: Protein of u 54.8 95 0.0021 23.8 8.1 45 39-83 54-98 (251)
60 TIGR00634 recN DNA repair prot 54.8 1.4E+02 0.003 25.7 9.7 19 74-92 351-369 (563)
61 TIGR01843 type_I_hlyD type I s 54.4 1E+02 0.0022 24.0 11.4 23 35-57 159-181 (423)
62 TIGR01005 eps_transp_fam exopo 54.2 1.5E+02 0.0033 26.0 9.6 60 36-99 340-399 (754)
63 PF04111 APG6: Autophagy prote 53.9 1.2E+02 0.0026 24.7 10.4 73 33-105 42-121 (314)
64 PF04849 HAP1_N: HAP1 N-termin 53.8 1.4E+02 0.003 25.3 10.6 80 26-106 192-278 (306)
65 cd07607 BAR_SH3P_plant The Bin 51.3 92 0.002 25.5 7.1 35 7-41 151-187 (209)
66 PHA02562 46 endonuclease subun 51.1 1.4E+02 0.003 24.6 11.9 39 55-93 220-258 (562)
67 PF08614 ATG16: Autophagy prot 50.8 1E+02 0.0022 22.9 8.1 87 15-108 97-183 (194)
68 PF07888 CALCOCO1: Calcium bin 50.6 2E+02 0.0043 26.2 12.7 58 35-92 172-236 (546)
69 PF00261 Tropomyosin: Tropomyo 50.0 66 0.0014 24.7 5.9 54 37-90 4-57 (237)
70 PF04156 IncA: IncA protein; 49.9 95 0.0021 22.3 11.9 87 12-98 94-180 (191)
71 KOG0161 Myosin class II heavy 49.1 2.9E+02 0.0063 28.9 11.5 97 2-98 1628-1738(1930)
72 PF04012 PspA_IM30: PspA/IM30 48.6 1.1E+02 0.0024 22.7 11.2 52 9-60 26-77 (221)
73 PF10174 Cast: RIM-binding pro 48.4 2.4E+02 0.0052 26.5 11.3 92 14-106 54-165 (775)
74 PF08614 ATG16: Autophagy prot 48.1 19 0.00041 26.8 2.7 58 49-106 75-132 (194)
75 KOG0243 Kinesin-like protein [ 47.0 3E+02 0.0064 27.2 12.7 104 2-108 451-557 (1041)
76 PRK10884 SH3 domain-containing 46.9 1.4E+02 0.003 23.3 8.6 24 4-27 84-107 (206)
77 KOG3595 Dyneins, heavy chain [ 46.3 3E+02 0.0065 27.0 11.2 94 10-103 931-1024(1395)
78 PRK04863 mukB cell division pr 45.6 3.3E+02 0.0072 27.4 12.7 16 8-23 316-331 (1486)
79 KOG4674 Uncharacterized conser 45.4 3.8E+02 0.0083 28.1 12.4 79 26-107 797-875 (1822)
80 PF09766 FimP: Fms-interacting 45.2 97 0.0021 25.6 6.6 56 44-99 97-152 (355)
81 PF00038 Filament: Intermediat 44.8 1.4E+02 0.0031 22.9 12.3 74 22-98 211-284 (312)
82 KOG0995 Centromere-associated 44.3 2.2E+02 0.0049 26.3 9.2 61 29-89 261-321 (581)
83 PF05701 WEMBL: Weak chloropla 43.9 2.2E+02 0.0047 24.7 11.8 80 21-100 296-382 (522)
84 PRK03918 chromosome segregatio 43.1 2.3E+02 0.005 24.9 12.8 23 72-94 676-698 (880)
85 PF05701 WEMBL: Weak chloropla 43.0 2.2E+02 0.0048 24.6 11.7 65 33-97 336-407 (522)
86 TIGR01801 CM_A chorismate muta 42.4 58 0.0012 22.7 4.2 66 41-107 4-86 (102)
87 PF08641 Mis14: Kinetochore pr 42.0 1.1E+02 0.0024 22.0 5.7 15 64-78 125-139 (139)
88 PF06008 Laminin_I: Laminin Do 41.6 1.6E+02 0.0035 22.6 10.5 68 33-100 44-111 (264)
89 TIGR03185 DNA_S_dndD DNA sulfu 40.6 2.5E+02 0.0055 24.6 9.6 29 34-62 428-456 (650)
90 TIGR03185 DNA_S_dndD DNA sulfu 40.2 2.6E+02 0.0055 24.5 12.8 47 59-105 266-319 (650)
91 PF13514 AAA_27: AAA domain 39.6 3.3E+02 0.0071 25.6 10.1 43 42-84 890-932 (1111)
92 PF05008 V-SNARE: Vesicle tran 39.5 97 0.0021 19.4 6.4 73 4-82 1-74 (79)
93 TIGR03752 conj_TIGR03752 integ 39.0 2E+02 0.0044 25.8 7.9 36 36-71 68-103 (472)
94 KOG1937 Uncharacterized conser 38.7 2.2E+02 0.0048 26.1 8.2 74 33-106 344-426 (521)
95 PRK09039 hypothetical protein; 36.6 2.4E+02 0.0053 23.2 11.1 48 49-96 138-185 (343)
96 TIGR02894 DNA_bind_RsfA transc 36.3 2.1E+02 0.0045 22.4 8.1 41 36-84 120-160 (161)
97 PF04849 HAP1_N: HAP1 N-termin 36.2 2E+02 0.0044 24.3 7.2 73 36-108 169-245 (306)
98 PF00170 bZIP_1: bZIP transcri 35.9 99 0.0021 19.1 4.2 33 71-103 28-60 (64)
99 PF12329 TMF_DNA_bd: TATA elem 35.8 1.3E+02 0.0028 19.9 7.7 55 52-106 16-70 (74)
100 PRK09973 putative outer membra 35.7 1.2E+02 0.0025 21.5 4.9 34 26-59 30-63 (85)
101 PHA02562 46 endonuclease subun 35.6 2.5E+02 0.0055 23.1 11.8 16 7-22 307-322 (562)
102 cd00179 SynN Syntaxin N-termin 35.4 1.4E+02 0.0031 20.3 7.2 22 1-22 1-22 (151)
103 smart00338 BRLZ basic region l 34.2 1.2E+02 0.0025 18.8 4.9 31 35-65 27-57 (65)
104 PF10498 IFT57: Intra-flagella 34.0 2.9E+02 0.0063 23.3 11.3 38 7-44 228-265 (359)
105 PRK10698 phage shock protein P 33.9 2.2E+02 0.0049 22.0 11.2 32 75-106 98-129 (222)
106 cd07596 BAR_SNX The Bin/Amphip 33.8 1.7E+02 0.0036 20.5 7.4 16 2-17 96-111 (218)
107 cd07623 BAR_SNX1_2 The Bin/Amp 33.8 2.1E+02 0.0047 21.8 7.5 22 32-53 121-142 (224)
108 KOG0996 Structural maintenance 33.4 5.4E+02 0.012 26.3 11.4 65 44-108 903-974 (1293)
109 PRK04778 septation ring format 32.9 3.3E+02 0.0072 23.7 10.4 16 36-51 350-365 (569)
110 PF13863 DUF4200: Domain of un 32.9 1.5E+02 0.0034 19.9 10.6 70 27-96 39-108 (126)
111 TIGR03495 phage_LysB phage lys 31.9 2.2E+02 0.0048 21.3 9.1 74 12-89 22-95 (135)
112 PF01544 CorA: CorA-like Mg2+ 31.8 2E+02 0.0044 20.9 10.0 54 2-57 121-174 (292)
113 KOG4677 Golgi integral membran 31.2 1.1E+02 0.0025 28.0 5.3 76 6-84 330-416 (554)
114 TIGR03007 pepcterm_ChnLen poly 31.0 3E+02 0.0066 22.6 9.6 86 7-96 276-375 (498)
115 COG1579 Zn-ribbon protein, pos 30.9 2.9E+02 0.0064 22.4 11.5 72 36-107 61-134 (239)
116 PF07798 DUF1640: Protein of u 30.9 2.2E+02 0.0048 21.0 8.6 11 8-18 25-35 (177)
117 PF09755 DUF2046: Uncharacteri 30.8 3.4E+02 0.0074 23.2 11.6 93 2-103 75-169 (310)
118 PF14235 DUF4337: Domain of un 30.8 2E+02 0.0044 21.5 5.8 49 9-63 47-95 (157)
119 KOG1962 B-cell receptor-associ 30.5 2.9E+02 0.0063 22.3 7.5 51 39-103 149-199 (216)
120 PF02646 RmuC: RmuC family; I 30.5 2.9E+02 0.0062 22.2 7.2 15 9-23 9-23 (304)
121 PRK04654 sec-independent trans 30.1 3.1E+02 0.0066 22.4 7.3 52 6-58 34-85 (214)
122 PF10392 COG5: Golgi transport 29.7 2E+02 0.0044 20.2 7.7 59 31-96 62-120 (132)
123 PF15070 GOLGA2L5: Putative go 29.4 3.3E+02 0.0072 24.8 7.8 46 3-48 15-64 (617)
124 PF04728 LPP: Lipoprotein leuc 29.4 1.7E+02 0.0037 19.3 4.6 23 36-58 19-41 (56)
125 PRK07857 hypothetical protein; 29.4 1.3E+02 0.0028 21.8 4.4 36 41-76 28-63 (106)
126 TIGR01807 CM_P2 chorismate mut 29.2 1.2E+02 0.0026 19.4 3.9 32 44-75 2-33 (76)
127 PF11221 Med21: Subunit 21 of 29.1 1.6E+02 0.0035 21.2 4.9 37 30-66 100-136 (144)
128 COG4985 ABC-type phosphate tra 28.8 3.7E+02 0.0081 23.0 7.7 80 10-92 165-244 (289)
129 KOG0018 Structural maintenance 28.7 5.4E+02 0.012 25.9 9.5 91 7-105 242-339 (1141)
130 COG3883 Uncharacterized protei 28.7 3.4E+02 0.0074 22.5 8.0 65 36-100 33-97 (265)
131 PF00769 ERM: Ezrin/radixin/mo 28.3 3E+02 0.0065 21.7 10.1 40 54-93 74-113 (246)
132 PF13747 DUF4164: Domain of un 28.2 2E+02 0.0043 19.7 7.8 65 34-98 15-82 (89)
133 PF13600 DUF4140: N-terminal d 27.8 1.4E+02 0.0029 19.7 4.0 28 7-34 71-98 (104)
134 PF11180 DUF2968: Protein of u 27.8 3.2E+02 0.007 21.9 7.6 67 38-104 116-182 (192)
135 cd00176 SPEC Spectrin repeats, 27.7 1.9E+02 0.0041 19.3 9.9 62 2-63 3-69 (213)
136 PF06419 COG6: Conserved oligo 27.7 3.9E+02 0.0084 23.7 7.8 25 40-64 65-89 (618)
137 PF13334 DUF4094: Domain of un 27.6 51 0.0011 23.0 2.0 20 30-49 76-95 (95)
138 PRK04778 septation ring format 27.5 4.1E+02 0.0089 23.1 9.6 38 58-95 386-423 (569)
139 PF06005 DUF904: Protein of un 27.3 1.9E+02 0.0042 19.3 6.8 50 31-80 15-64 (72)
140 PF03962 Mnd1: Mnd1 family; I 27.1 2.8E+02 0.0061 21.0 6.6 39 26-64 61-99 (188)
141 PF08898 DUF1843: Domain of un 26.8 1.3E+02 0.0028 19.9 3.7 32 51-82 20-51 (53)
142 COG3883 Uncharacterized protei 26.3 3.8E+02 0.0083 22.3 8.3 64 29-92 33-96 (265)
143 cd00890 Prefoldin Prefoldin is 26.0 2E+02 0.0044 19.0 5.3 39 35-73 88-126 (129)
144 PF12128 DUF3584: Protein of u 26.0 5.9E+02 0.013 24.4 13.1 99 3-101 597-703 (1201)
145 PF14282 FlxA: FlxA-like prote 25.5 2.3E+02 0.0049 19.6 5.0 46 36-81 21-70 (106)
146 PF10174 Cast: RIM-binding pro 25.5 5.8E+02 0.013 24.1 9.2 63 36-98 268-330 (775)
147 PF12795 MscS_porin: Mechanose 25.3 3.1E+02 0.0067 20.9 9.1 50 57-106 80-129 (240)
148 PF04420 CHD5: CHD5-like prote 24.8 76 0.0016 23.4 2.6 26 68-93 65-90 (161)
149 PF02899 Phage_int_SAM_1: Phag 24.8 1E+02 0.0022 18.5 2.8 21 2-22 2-30 (84)
150 PF04582 Reo_sigmaC: Reovirus 24.5 87 0.0019 26.7 3.2 78 14-91 57-134 (326)
151 PF10186 Atg14: UV radiation r 24.2 3E+02 0.0066 20.4 11.6 16 42-57 71-86 (302)
152 PF04697 Pinin_SDK_N: pinin/SD 24.1 98 0.0021 23.8 3.1 28 34-61 3-30 (134)
153 PF12998 ING: Inhibitor of gro 23.9 2.1E+02 0.0045 18.4 6.6 82 17-101 5-97 (105)
154 PF06103 DUF948: Bacterial pro 23.8 2.1E+02 0.0046 18.5 7.0 41 40-80 32-72 (90)
155 TIGR01808 CM_M_hiGC-arch monof 23.7 2.1E+02 0.0044 18.7 4.2 33 43-75 2-34 (74)
156 cd00632 Prefoldin_beta Prefold 22.9 2.5E+02 0.0054 18.9 5.8 30 78-107 72-101 (105)
157 PF08317 Spc7: Spc7 kinetochor 22.7 4.1E+02 0.0089 21.4 11.4 64 34-97 223-290 (325)
158 PF05103 DivIVA: DivIVA protei 22.7 1.1E+02 0.0025 20.4 2.9 49 45-93 22-70 (131)
159 TIGR02680 conserved hypothetic 22.5 7.4E+02 0.016 24.3 11.9 99 1-102 225-323 (1353)
160 PF11559 ADIP: Afadin- and alp 22.4 2.9E+02 0.0062 19.5 9.4 25 37-61 97-121 (151)
161 PF05911 DUF869: Plant protein 22.1 6.8E+02 0.015 23.7 11.3 62 38-99 89-164 (769)
162 PF09311 Rab5-bind: Rabaptin-l 22.0 41 0.0009 25.1 0.8 65 37-101 18-82 (181)
163 PF13926 DUF4211: Domain of un 22.0 95 0.0021 22.2 2.6 37 2-38 66-102 (153)
164 PRK09841 cryptic autophosphory 21.9 5.8E+02 0.013 22.8 8.9 30 70-99 364-393 (726)
165 TIGR01791 CM_archaeal chorisma 21.9 1.9E+02 0.0042 18.5 3.8 31 44-74 2-32 (83)
166 PF10211 Ax_dynein_light: Axon 21.9 3.6E+02 0.0078 20.4 9.1 20 87-106 167-186 (189)
167 PF07106 TBPIP: Tat binding pr 21.7 2.9E+02 0.0064 19.8 5.1 51 36-86 81-140 (169)
168 PF05667 DUF812: Protein of un 21.7 6.1E+02 0.013 23.0 10.7 20 76-95 394-413 (594)
169 COG0732 HsdS Restriction endon 21.0 2.5E+02 0.0055 20.8 4.7 36 25-60 140-176 (391)
170 PF05635 23S_rRNA_IVP: 23S rRN 21.0 1.2E+02 0.0025 20.3 2.7 28 55-82 33-60 (110)
171 PF05266 DUF724: Protein of un 20.7 4E+02 0.0087 20.5 7.6 64 18-88 115-178 (190)
172 TIGR03017 EpsF chain length de 20.7 4.5E+02 0.0099 21.1 10.2 16 8-23 256-271 (444)
173 PRK09239 chorismate mutase; Pr 20.6 2.9E+02 0.0062 19.3 4.7 33 42-74 11-43 (104)
174 cd07602 BAR_RhoGAP_OPHN1-like 20.5 1.9E+02 0.004 22.9 4.1 49 34-82 2-50 (207)
175 TIGR01805 CM_mono_grmpos monof 20.4 2.2E+02 0.0047 18.4 3.9 32 44-75 2-33 (81)
176 PF13543 KSR1-SAM: SAM like do 20.4 91 0.002 23.3 2.3 29 77-108 14-42 (129)
177 TIGR01799 CM_T chorismate muta 20.3 2.2E+02 0.0047 18.5 3.9 30 45-74 3-32 (83)
178 PRK11519 tyrosine kinase; Prov 20.1 6.3E+02 0.014 22.6 9.1 30 71-100 365-394 (719)
179 PF10481 CENP-F_N: Cenp-F N-te 20.1 5.8E+02 0.012 22.1 10.1 88 15-102 20-121 (307)
No 1
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.20 E-value=0.2 Score=37.43 Aligned_cols=93 Identities=20% Similarity=0.341 Sum_probs=74.0
Q ss_pred HHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchh
Q 037586 7 YMKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSS 86 (110)
Q Consensus 7 ~mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~ 86 (110)
|.-+|.+-+-.++..=..+..+-=.....|.+|+..|.-+.++.+++..|.+-+...+..+--..=++|++|+.||+-.+
T Consensus 25 ~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~ 104 (140)
T PF10473_consen 25 HVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNS 104 (140)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44455555555555444444444556778889999999999999999999999999999999899999999999999999
Q ss_pred hHHHHHHHHHHHH
Q 037586 87 TLSQTLELITQER 99 (110)
Q Consensus 87 tL~qtLEll~qe~ 99 (110)
.+..-|+..-++.
T Consensus 105 ~~~~~l~~~E~ek 117 (140)
T PF10473_consen 105 SLENLLQEKEQEK 117 (140)
T ss_pred HHHHHHHHHHHHH
Confidence 9888888777764
No 2
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=95.52 E-value=0.046 Score=43.55 Aligned_cols=94 Identities=23% Similarity=0.320 Sum_probs=66.1
Q ss_pred hhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhh---hhhHHHHHHHH------H-----------------HHHHHH
Q 037586 16 NDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETK---KFKEDAEKMTM------E-----------------KGQICA 69 (110)
Q Consensus 16 nD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetk---r~~ee~e~~~k------a-----------------~g~i~~ 69 (110)
++++.+.+...++=..|...|..||+||..+.+... ...+.+..+.- . .+.---
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siL 81 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSIL 81 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHH
Confidence 567778888888888899999999999999997622 22222111100 0 001112
Q ss_pred HHHHHhh-----hhhhhhcchhhHHHHHHHHHHHHhhhhh---hhhhc
Q 037586 70 QILEKQR-----KIASLESDSSTLSQTLELITQERVSISS---KLVEK 109 (110)
Q Consensus 70 ~ilekQr-----kiasLe~d~~tL~qtLEll~qe~~s~s~---kl~ek 109 (110)
.|.-+|| |...||.+...+.+++..|++|..++-+ ||-||
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEK 129 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEK 129 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555665 8999999999999999999999999864 56655
No 3
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.42 E-value=0.47 Score=38.24 Aligned_cols=83 Identities=16% Similarity=0.308 Sum_probs=71.7
Q ss_pred HHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchh
Q 037586 7 YMKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSS 86 (110)
Q Consensus 7 ~mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~ 86 (110)
.+..+|.++++.|++-..++-+.+ +.+|+.++..++.+...+.++...+....+.+.-+|...+.++.+++.+.+
T Consensus 67 ei~~~r~r~~~~e~kl~~v~~~~e-----~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~ 141 (239)
T COG1579 67 EIQEIRERIKRAEEKLSAVKDERE-----LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLA 141 (239)
T ss_pred HHHHHHHHHHHHHHHHhccccHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888766665554 578899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHH
Q 037586 87 TLSQTLEL 94 (110)
Q Consensus 87 tL~qtLEl 94 (110)
.+.++++.
T Consensus 142 e~~~~~e~ 149 (239)
T COG1579 142 EAEARLEE 149 (239)
T ss_pred HHHHHHHH
Confidence 88888765
No 4
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=92.82 E-value=4.3 Score=35.08 Aligned_cols=6 Identities=33% Similarity=0.684 Sum_probs=2.1
Q ss_pred hHhhHH
Q 037586 39 LENDLV 44 (110)
Q Consensus 39 ~e~Dl~ 44 (110)
++..+.
T Consensus 293 ~~~~i~ 298 (1179)
T TIGR02168 293 LANEIS 298 (1179)
T ss_pred HHHHHH
Confidence 333333
No 5
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=92.72 E-value=5.2 Score=34.59 Aligned_cols=16 Identities=0% Similarity=0.268 Sum_probs=5.8
Q ss_pred HhhHHHhhhHhhhhhH
Q 037586 40 ENDLVSAKTETKKFKE 55 (110)
Q Consensus 40 e~Dl~~v~aetkr~~e 55 (110)
+.++...+++..++..
T Consensus 725 ~~~~~~~~~~~~~~~~ 740 (1179)
T TIGR02168 725 SRQISALRKDLARLEA 740 (1179)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=92.44 E-value=4.8 Score=35.18 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=6.0
Q ss_pred hHHHhhhHhhhhhHHHH
Q 037586 42 DLVSAKTETKKFKEDAE 58 (110)
Q Consensus 42 Dl~~v~aetkr~~ee~e 58 (110)
.+...+.+..++..+.+
T Consensus 400 ~~~~~~~~~~~l~~~l~ 416 (1164)
T TIGR02169 400 EINELKRELDRLQEELQ 416 (1164)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=92.09 E-value=6.6 Score=34.36 Aligned_cols=34 Identities=15% Similarity=0.351 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchh
Q 037586 53 FKEDAEKMTMEKGQICAQILEKQRKIASLESDSS 86 (110)
Q Consensus 53 ~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~ 86 (110)
+..+.+.+......+..++-+.+.++..++..-.
T Consensus 404 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~ 437 (1164)
T TIGR02169 404 LKRELDRLQEELQRLSEELADLNAAIAGIEAKIN 437 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444444444433333
No 8
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.54 E-value=8.2 Score=31.41 Aligned_cols=100 Identities=17% Similarity=0.358 Sum_probs=58.8
Q ss_pred HHHHHHHHHH------HHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 037586 3 EYLQYMKTLR------SQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQR 76 (110)
Q Consensus 3 eYL~~mktLR------s~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQr 76 (110)
.|...++.|+ .-..+++++-.+...||..-...+..+|+.-+.+..|.+.+..+.+.+-....+.....-..|.
T Consensus 27 ~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~ 106 (314)
T PF04111_consen 27 TYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQL 106 (314)
T ss_dssp ---------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555 2234556666667777777777888888888888888777777777777666666666666666
Q ss_pred hhhhhhcchhhHHHHHHHHHHHHhhh
Q 037586 77 KIASLESDSSTLSQTLELITQERVSI 102 (110)
Q Consensus 77 kiasLe~d~~tL~qtLEll~qe~~s~ 102 (110)
....+..+...+..-++........+
T Consensus 107 ~l~~~~~e~~sl~~q~~~~~~~L~~L 132 (314)
T PF04111_consen 107 ELIEFQEERDSLKNQYEYASNQLDRL 132 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665555555555555544443
No 9
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=89.37 E-value=8.2 Score=29.59 Aligned_cols=99 Identities=19% Similarity=0.373 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhhhHHH-------HHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 037586 5 LQYMKTLRSQMNDVED-------QAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRK 77 (110)
Q Consensus 5 L~~mktLRs~MnD~Ed-------~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrk 77 (110)
|+-.++|..+|+++-. ..+.++.|-.....-+..++.+.+..+.+.+....|--.+...++.+- .-+.+
T Consensus 26 L~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~----~~ek~ 101 (201)
T PF13851_consen 26 LELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLK----ELEKE 101 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 5667888888877644 445567777777778888888888888888887777777666665543 45778
Q ss_pred hhhhhcchhhHHHHHHHHHHHHhhhhhhhh
Q 037586 78 IASLESDSSTLSQTLELITQERVSISSKLV 107 (110)
Q Consensus 78 iasLe~d~~tL~qtLEll~qe~~s~s~kl~ 107 (110)
|..|+.+...|.|-++=+.+||..+..+..
T Consensus 102 l~~Lk~e~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 102 LKDLKWEHEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887754
No 10
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=89.03 E-value=8.8 Score=29.50 Aligned_cols=88 Identities=19% Similarity=0.323 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 037586 3 EYLQYMKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLE 82 (110)
Q Consensus 3 eYL~~mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe 82 (110)
-|-..++.||.++.++-.+-|+.-.+-..-...++.+..-+....+..+.+..+...+-+.-.........-+.+|.+|.
T Consensus 51 ~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~ 130 (312)
T PF00038_consen 51 MYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLK 130 (312)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHH
Confidence 36677777777777777777777777777777777777777666666666666666666666666666666666666666
Q ss_pred cchhhHHH
Q 037586 83 SDSSTLSQ 90 (110)
Q Consensus 83 ~d~~tL~q 90 (110)
.+..-+.+
T Consensus 131 eEl~fl~~ 138 (312)
T PF00038_consen 131 EELEFLKQ 138 (312)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55554443
No 11
>smart00150 SPEC Spectrin repeats.
Probab=88.92 E-value=3.5 Score=24.83 Aligned_cols=61 Identities=16% Similarity=0.271 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhH-----HHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHH
Q 037586 3 EYLQYMKTLRSQMNDVEDQAAKVSV-----EEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTME 63 (110)
Q Consensus 3 eYL~~mktLRs~MnD~Ed~AAkvSv-----Eeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka 63 (110)
.|...+..|-+-|++.|.....-.+ .=+.+..-.+.|..|+..-....+.+...+++|...
T Consensus 2 ~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~ 67 (101)
T smart00150 2 QFLRDADELEAWLSEKEALLASEDLGKDLESVEALLKKHEALEAELEAHEERVEALNELGEQLIEE 67 (101)
T ss_pred chHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 5788888899999988855433222 224445566777777777777777777777666655
No 12
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=88.73 E-value=8 Score=32.07 Aligned_cols=63 Identities=24% Similarity=0.331 Sum_probs=57.5
Q ss_pred HHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHHHHHHH
Q 037586 35 TIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTLELITQ 97 (110)
Q Consensus 35 ~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtLEll~q 97 (110)
-++..+++|+..+.|.....++..+.-+.-++++..|-+--.+++.|+-+++.|..++-.+..
T Consensus 194 eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~s 256 (269)
T PF05278_consen 194 EKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKS 256 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678899999999999999999999999999999999999999999999999999877654
No 13
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=87.81 E-value=4.3 Score=24.43 Aligned_cols=63 Identities=14% Similarity=0.271 Sum_probs=48.8
Q ss_pred ChHHHHHHHHHHHHhhhHHHHHhhhh-----HHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHH
Q 037586 1 MEEYLQYMKTLRSQMNDVEDQAAKVS-----VEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTME 63 (110)
Q Consensus 1 MEeYL~~mktLRs~MnD~Ed~AAkvS-----vEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka 63 (110)
++.|...+..|-.-|++.|....... .+=+.+...+..+..|+.........+.+....|...
T Consensus 3 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~ 70 (105)
T PF00435_consen 3 LQQFQQEADELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDS 70 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 36789999999999999998874332 2345566688888999998888888888888888444
No 14
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=87.00 E-value=18 Score=33.83 Aligned_cols=76 Identities=12% Similarity=0.292 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhhhHHHHHhhhhHHHHHHHH-HHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 037586 5 LQYMKTLRSQMNDVEDQAAKVSVEEQTQIS-TIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASL 81 (110)
Q Consensus 5 L~~mktLRs~MnD~Ed~AAkvSvEeq~Q~t-~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasL 81 (110)
..-..+++..++++....... ..+..+.+ .|..++.++..++.+.+.+..+...+...-.++-..|...+..+...
T Consensus 266 ~~~i~~~~~~~~e~~~~~~~~-~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (1163)
T COG1196 266 EKEIEELKSELEELREELEEL-QEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEER 342 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888888888888888 45555444 88888888888888888888776666655555555555555555444
No 15
>PRK11637 AmiB activator; Provisional
Probab=86.97 E-value=7.7 Score=31.84 Aligned_cols=17 Identities=12% Similarity=0.298 Sum_probs=6.4
Q ss_pred HHhhHhhHHHhhhHhhh
Q 037586 36 IQSLENDLVSAKTETKK 52 (110)
Q Consensus 36 I~a~e~Dl~~v~aetkr 52 (110)
|..+++.|..+..+...
T Consensus 77 l~~l~~qi~~~~~~i~~ 93 (428)
T PRK11637 77 LKKQEEAISQASRKLRE 93 (428)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 16
>PRK10884 SH3 domain-containing protein; Provisional
Probab=86.93 E-value=6 Score=30.83 Aligned_cols=33 Identities=15% Similarity=0.224 Sum_probs=23.9
Q ss_pred HhhhhhhhhcchhhHHHHHHHHHHHHhhhhhhh
Q 037586 74 KQRKIASLESDSSTLSQTLELITQERVSISSKL 106 (110)
Q Consensus 74 kQrkiasLe~d~~tL~qtLEll~qe~~s~s~kl 106 (110)
....|+.|+.+-..|.+.|+.++.+...+-+++
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQL 162 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466688888888888888888887776654
No 17
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=86.02 E-value=20 Score=34.93 Aligned_cols=43 Identities=16% Similarity=0.275 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhh
Q 037586 6 QYMKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKT 48 (110)
Q Consensus 6 ~~mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~a 48 (110)
....++|.-|+++|++-+....|--.|-.=|..+-+|+.-++.
T Consensus 309 ~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~r 351 (1074)
T KOG0250|consen 309 GKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRR 351 (1074)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 3344555555555555555554444444444444444444433
No 18
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=85.77 E-value=15 Score=28.70 Aligned_cols=106 Identities=22% Similarity=0.274 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhHHHHHHHH-HHHhhHhhHHHhhhHhhhhhHH-HHHHHHH-HHHHHHHHHHHhhhhh
Q 037586 3 EYLQYMKTLRSQMNDVEDQAAKVSVEEQTQIS-TIQSLENDLVSAKTETKKFKED-AEKMTME-KGQICAQILEKQRKIA 79 (110)
Q Consensus 3 eYL~~mktLRs~MnD~Ed~AAkvSvEeq~Q~t-~I~a~e~Dl~~v~aetkr~~ee-~e~~~ka-~g~i~~~ilekQrkia 79 (110)
.|-++|...-+.|+++|+.--+.=...|-+++ .++.|++++..-.++..-+-++ .+++.++ ...+|.+|.|-+.+.-
T Consensus 16 ~~~~sls~~~~~~kqve~~~l~~lkqqqd~itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~l~d~inE~t~k~~ 95 (165)
T PF09602_consen 16 QWSQSLSLFASFMKQVEQQTLKKLKQQQDWITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGNSLNDSINEWTDKLN 95 (165)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999999999888655555554 5788999999988888888777 5666444 4578999999998876
Q ss_pred hhhcchh--------hHHHHHHHHHHHHhhhhhhhhh
Q 037586 80 SLESDSS--------TLSQTLELITQERVSISSKLVE 108 (110)
Q Consensus 80 sLe~d~~--------tL~qtLEll~qe~~s~s~kl~e 108 (110)
.+..-.. +..+.|.-++....-+..++++
T Consensus 96 El~~~i~el~~~~~Ks~~~~l~q~~~~~eEtv~~~ie 132 (165)
T PF09602_consen 96 ELSAKIQELLLSPSKSSFSLLSQISKQYEETVKQLIE 132 (165)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 6654433 2334455555566666666654
No 19
>PRK02224 chromosome segregation protein; Provisional
Probab=84.80 E-value=27 Score=30.73 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=9.6
Q ss_pred HHHHhhhhhhhhcchhhHHHHHH
Q 037586 71 ILEKQRKIASLESDSSTLSQTLE 93 (110)
Q Consensus 71 ilekQrkiasLe~d~~tL~qtLE 93 (110)
+-+-+.+|+.++.+-..|...++
T Consensus 594 ~~~~~~~i~~~~~~~~~~~~~~~ 616 (880)
T PRK02224 594 IRTLLAAIADAEDEIERLREKRE 616 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444443433333
No 20
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=84.57 E-value=9.4 Score=29.29 Aligned_cols=61 Identities=21% Similarity=0.352 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHH
Q 037586 2 EEYLQYMKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTM 62 (110)
Q Consensus 2 EeYL~~mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~k 62 (110)
+.|=..++.|....+.+|..|-.....-+.-...|+.++.+|.+.+...+.++.+.|+.+.
T Consensus 172 ~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~ 232 (237)
T PF00261_consen 172 DEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLN 232 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577778899999999998877666666777888999999999999999999999887654
No 21
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=83.97 E-value=26 Score=32.82 Aligned_cols=94 Identities=21% Similarity=0.356 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhhHHHHHhhhhHH-------HHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 037586 6 QYMKTLRSQMNDVEDQAAKVSVE-------EQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKI 78 (110)
Q Consensus 6 ~~mktLRs~MnD~Ed~AAkvSvE-------eq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrki 78 (110)
.-+..++..|+.+++..+..-.+ .+.+...+..++.-+..++.+...+..+.+.....+-..-.+|-+.+.++
T Consensus 758 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~ 837 (1163)
T COG1196 758 ERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEI 837 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554332221 23333556666666655554444444444444444434444444444444
Q ss_pred hhhhcchhhHHHHHHHHHHHH
Q 037586 79 ASLESDSSTLSQTLELITQER 99 (110)
Q Consensus 79 asLe~d~~tL~qtLEll~qe~ 99 (110)
..++.....|...++-+..+.
T Consensus 838 ~~~~~~~~~l~~~~~~~~~~~ 858 (1163)
T COG1196 838 EELEEKLDELEEELEELEKEL 858 (1163)
T ss_pred HHHHHHHHHHHHhHHHHHHHH
Confidence 444444444444444333333
No 22
>PRK02224 chromosome segregation protein; Provisional
Probab=83.53 E-value=31 Score=30.39 Aligned_cols=34 Identities=15% Similarity=0.109 Sum_probs=17.4
Q ss_pred HHHHHHhhhhhhhhcchhhHHHHHHHHHHHHhhh
Q 037586 69 AQILEKQRKIASLESDSSTLSQTLELITQERVSI 102 (110)
Q Consensus 69 ~~ilekQrkiasLe~d~~tL~qtLEll~qe~~s~ 102 (110)
..+-+-|.++..+..+-..+..++..+......+
T Consensus 412 ~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 445 (880)
T PRK02224 412 DFLEELREERDELREREAELEATLRTARERVEEA 445 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555554444443
No 23
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=82.85 E-value=19 Score=27.58 Aligned_cols=58 Identities=17% Similarity=0.319 Sum_probs=44.8
Q ss_pred HHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHH
Q 037586 35 TIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTL 92 (110)
Q Consensus 35 ~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtL 92 (110)
.|+.+...-....++.+++..+.+.+.....++-..+...+.+|++|+.+-..+..+.
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~ 100 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETR 100 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666677777788888888888888888888888888888888887777666543
No 24
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=80.12 E-value=10 Score=35.10 Aligned_cols=60 Identities=28% Similarity=0.396 Sum_probs=48.9
Q ss_pred HHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHH--HHHHHHhhhhhhhhcchhhHHHHHHHHHHHHh
Q 037586 29 EQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQIC--AQILEKQRKIASLESDSSTLSQTLELITQERV 100 (110)
Q Consensus 29 eq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~--~~ilekQrkiasLe~d~~tL~qtLEll~qe~~ 100 (110)
=|+|+.+...=--..+..+-|.||+.||++.+--+--+.+ -.|+|+| |..|||-|+.||.
T Consensus 109 lQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~q------------leEALesl~~ERe 170 (717)
T PF09730_consen 109 LQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQ------------LEEALESLKSERE 170 (717)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHH
Confidence 3888888888888899999999999999998876655544 3566666 7789999999986
No 25
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=79.82 E-value=12 Score=23.36 Aligned_cols=31 Identities=10% Similarity=0.397 Sum_probs=25.2
Q ss_pred ChHHHHHHHHHHHHhhhHHHHHhhhhHHHHH
Q 037586 1 MEEYLQYMKTLRSQMNDVEDQAAKVSVEEQT 31 (110)
Q Consensus 1 MEeYL~~mktLRs~MnD~Ed~AAkvSvEeq~ 31 (110)
|++|++....++..|+.++....++..--..
T Consensus 2 ~~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~ 32 (103)
T PF00804_consen 2 MPEFFDEVQEIREDIDKIKEKLNELRKLHKK 32 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999888777654333
No 26
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=78.54 E-value=23 Score=25.87 Aligned_cols=87 Identities=20% Similarity=0.223 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 037586 5 LQYMKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESD 84 (110)
Q Consensus 5 L~~mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d 84 (110)
.+-.-.+...+.++|+.....--|=..=-.=++.+|.||..+..+.+.+++..+...+..+..- --+|+|..||-+
T Consensus 13 ~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E----~l~rriq~LEee 88 (143)
T PF12718_consen 13 QDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE----QLNRRIQLLEEE 88 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH----HHHhhHHHHHHH
Confidence 3444556667777777776665554444556788999999999999988888887766655443 568899988887
Q ss_pred hhhHHHHHHHH
Q 037586 85 SSTLSQTLELI 95 (110)
Q Consensus 85 ~~tL~qtLEll 95 (110)
.-.....|.-.
T Consensus 89 le~ae~~L~e~ 99 (143)
T PF12718_consen 89 LEEAEKKLKET 99 (143)
T ss_pred HHHHHHHHHHH
Confidence 66544444433
No 27
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=77.41 E-value=8.3 Score=27.87 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=17.4
Q ss_pred HHhhhhhhhhcchhhHHHHHHHHHHHHhh
Q 037586 73 EKQRKIASLESDSSTLSQTLELITQERVS 101 (110)
Q Consensus 73 ekQrkiasLe~d~~tL~qtLEll~qe~~s 101 (110)
+-...|..|+.++..|..-|+-|+.....
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l~~~~~~ 141 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKLRSGSKP 141 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34455666666666666666666654443
No 28
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=77.15 E-value=12 Score=30.05 Aligned_cols=46 Identities=28% Similarity=0.388 Sum_probs=35.8
Q ss_pred HHHhhHhhHHHhhhHhhhhhHHHHHHHHHH----------------------HHHHHHHHHHhhhhhh
Q 037586 35 TIQSLENDLVSAKTETKKFKEDAEKMTMEK----------------------GQICAQILEKQRKIAS 80 (110)
Q Consensus 35 ~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~----------------------g~i~~~ilekQrkias 80 (110)
.-.+++.|+..++.-.+.|+.-.|+|+..- .++-+++||||.+++.
T Consensus 108 q~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (189)
T TIGR02132 108 QAPALKKDVTKLKQDIKSLDKKLDKILELLEGQQKTQDELKETIQKQIKTQGEQLQAQLLEKQEALAA 175 (189)
T ss_pred hCchHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 345788999999999999998888876542 2677889999987653
No 29
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=76.56 E-value=26 Score=26.03 Aligned_cols=24 Identities=13% Similarity=0.248 Sum_probs=10.0
Q ss_pred HHHHHHHHHhhhhhhhhcchhhHH
Q 037586 66 QICAQILEKQRKIASLESDSSTLS 89 (110)
Q Consensus 66 ~i~~~ilekQrkiasLe~d~~tL~ 89 (110)
.+-.+|-.++.+|..+...-.+..
T Consensus 81 ~~~~~i~~~r~~l~~~~~~l~~~~ 104 (302)
T PF10186_consen 81 RLRKRIEQKRERLEELRESLEQRR 104 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443333333
No 30
>PRK04863 mukB cell division protein MukB; Provisional
Probab=76.40 E-value=71 Score=31.79 Aligned_cols=30 Identities=23% Similarity=0.183 Sum_probs=14.6
Q ss_pred HHHHHHhhhhhhhhcchhhHHHHHHHHHHH
Q 037586 69 AQILEKQRKIASLESDSSTLSQTLELITQE 98 (110)
Q Consensus 69 ~~ilekQrkiasLe~d~~tL~qtLEll~qe 98 (110)
..+.+++.++..++.+...++..++-+.+.
T Consensus 449 aklee~e~qL~elE~kL~~lea~leql~~~ 478 (1486)
T PRK04863 449 AKEQEATEELLSLEQKLSVAQAAHSQFEQA 478 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555444444443
No 31
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=75.73 E-value=34 Score=26.35 Aligned_cols=56 Identities=18% Similarity=0.276 Sum_probs=35.8
Q ss_pred hhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHHHHHHHHHhhh
Q 037586 47 KTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTLELITQERVSI 102 (110)
Q Consensus 47 ~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtLEll~qe~~s~ 102 (110)
..+.+.+......+-.+...+....-++..+|+.|.+++.++.+.++-...+-.++
T Consensus 130 e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 130 ESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445555555555666788889999999988887766655544
No 32
>PF08831 MHCassoc_trimer: Class II MHC-associated invariant chain trimerisation domain; InterPro: IPR011988 This entry represents the trimerisation domain of the MHC class II-associated invariant chain (Ii). Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several molecules then act upon MHC II molecules in endosomes to facilitate peptide loading: Ii-degrading proteases, the peptide exchange factor, human leukocyte antigen-DM (HLA-DM), and its modulator, HLA-DO (DO). The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1IIE_C.
Probab=74.84 E-value=2.3 Score=29.46 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHhhhHHHH
Q 037586 2 EEYLQYMKTLRSQMNDVEDQ 21 (110)
Q Consensus 2 EeYL~~mktLRs~MnD~Ed~ 21 (110)
+.|++||+.|+..|++.|=+
T Consensus 25 ~tf~~NL~~LK~~M~~~~Wk 44 (72)
T PF08831_consen 25 GTFLENLKHLKNQMNESDWK 44 (72)
T ss_dssp S-HHHHHHHHHHHS-HHHHH
T ss_pred hHHHHHHHHHHHhcchhhHH
Confidence 35899999999999998743
No 33
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=73.55 E-value=51 Score=27.83 Aligned_cols=97 Identities=13% Similarity=0.074 Sum_probs=54.8
Q ss_pred HHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhh----hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 037586 7 YMKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETK----KFKEDAEKMTMEKGQICAQILEKQRKIASLE 82 (110)
Q Consensus 7 ~mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetk----r~~ee~e~~~ka~g~i~~~ilekQrkiasLe 82 (110)
.++.|+.++..++++-+.+..+.......|.-+++=-..+....+ .-..+...+...-+++..++.+-..++..++
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAE 151 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888888888777776544444433333221111100110 0122455666666667677766666666666
Q ss_pred cchhhHHHHHHHHHHHHhhhh
Q 037586 83 SDSSTLSQTLELITQERVSIS 103 (110)
Q Consensus 83 ~d~~tL~qtLEll~qe~~s~s 103 (110)
..-..+..-|+-|+++...++
T Consensus 152 ~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 152 RRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 666666666666666665554
No 34
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=72.70 E-value=6.8 Score=26.27 Aligned_cols=46 Identities=28% Similarity=0.448 Sum_probs=33.6
Q ss_pred HHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHH
Q 037586 7 YMKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKED 56 (110)
Q Consensus 7 ~mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee 56 (110)
-+...|+++..++| --+|+|+|.+ -|..|+.-++.-++-..++++.
T Consensus 36 Klq~ar~~i~~lpg--i~~s~eeq~~--~i~~Le~~i~~k~~~L~~~~~~ 81 (83)
T PF07544_consen 36 KLQKARAAIRELPG--IDRSVEEQEE--EIEELEEQIRKKREVLQKFKER 81 (83)
T ss_pred HHHHHHHHHHhCCC--ccCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 35667888888888 6788888765 5888888887766666665543
No 35
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=72.43 E-value=48 Score=26.54 Aligned_cols=72 Identities=13% Similarity=0.236 Sum_probs=50.5
Q ss_pred HHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 037586 7 YMKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKI 78 (110)
Q Consensus 7 ~mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrki 78 (110)
.+..||+..+.+|++..+..+.--.=..-.+.|.+-++.-.-+..++..+++++-+..-++|.....-|+.|
T Consensus 68 EledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 68 ELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 345667778888998888877655555556667777777777777777777777777776666655555555
No 36
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=71.39 E-value=37 Score=26.94 Aligned_cols=69 Identities=19% Similarity=0.230 Sum_probs=50.6
Q ss_pred HHHHHHHHhhHhhHHHhhhHhhhhhH-HHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHHHHHHHHHhh
Q 037586 30 QTQISTIQSLENDLVSAKTETKKFKE-DAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTLELITQERVS 101 (110)
Q Consensus 30 q~Q~t~I~a~e~Dl~~v~aetkr~~e-e~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtLEll~qe~~s 101 (110)
..++.=+..+.++.+-+..+.+-+.. |-.+--..+. .=+-+-|..+++||.++..-.+.|+-.|+.++.
T Consensus 37 ~~hr~r~~~VmkeW~eaE~~~~~l~~~DPk~Ae~~k~---~m~~rFQ~~v~aLE~e~~~er~qL~~~H~qRV~ 106 (193)
T PF12925_consen 37 EKHRERMTKVMKEWSEAEERYKELPKADPKKAEQFKK---EMTQRFQKTVQALEQEAAAERQQLVETHQQRVQ 106 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677888888888888776642 2112112222 335678999999999999999999999999984
No 37
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=70.90 E-value=17 Score=20.78 Aligned_cols=55 Identities=13% Similarity=0.225 Sum_probs=46.3
Q ss_pred ChHHHHHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhH
Q 037586 1 MEEYLQYMKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKE 55 (110)
Q Consensus 1 MEeYL~~mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~e 55 (110)
+++..+.+..|..-+.++-.-+...+.+=..|-..|+.++.++..+....+....
T Consensus 1 ~~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~ 55 (60)
T cd00193 1 EQERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANK 55 (60)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888999999999999999989888999999999999998887665543
No 38
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.73 E-value=21 Score=33.53 Aligned_cols=60 Identities=30% Similarity=0.397 Sum_probs=48.9
Q ss_pred HHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHH--HHHHHHHHHHhhhhhhhhcchhhHHHHHHHHHHHHhh
Q 037586 30 QTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEK--GQICAQILEKQRKIASLESDSSTLSQTLELITQERVS 101 (110)
Q Consensus 30 q~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~--g~i~~~ilekQrkiasLe~d~~tL~qtLEll~qe~~s 101 (110)
|+|+++++.---..+.++-+.|||.|+++-|-.+- +.+--.|++|| |..+||-+++||.-
T Consensus 183 QKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQ------------lEEALeTlq~EReq 244 (772)
T KOG0999|consen 183 QKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQ------------LEEALETLQQEREQ 244 (772)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHhHHHH
Confidence 78888888877788999999999999999887764 44566788887 56788889988863
No 39
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=70.71 E-value=26 Score=31.41 Aligned_cols=68 Identities=16% Similarity=0.280 Sum_probs=55.3
Q ss_pred HHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHHHHHHH
Q 037586 30 QTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTLELITQ 97 (110)
Q Consensus 30 q~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtLEll~q 97 (110)
..+..-++.+..=|..++++...+..+.+.+....++++.++.+.+.....+|..-.-.+.+++||-.
T Consensus 324 ~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d 391 (594)
T PF05667_consen 324 EEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPD 391 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45566677788888888888888888888888888889999999888888888888877788777653
No 40
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=70.24 E-value=24 Score=24.59 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=13.4
Q ss_pred HHHHHHHH-HHHHhhhHHHHHhh
Q 037586 3 EYLQYMKT-LRSQMNDVEDQAAK 24 (110)
Q Consensus 3 eYL~~mkt-LRs~MnD~Ed~AAk 24 (110)
+||-|+.. |-+.+..+++....
T Consensus 69 eYLl~~q~~L~~~~~~l~~~~~~ 91 (118)
T PF13815_consen 69 EYLLHCQEYLSSQLEQLEERLQE 91 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777754 66666666555443
No 41
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=69.51 E-value=53 Score=25.84 Aligned_cols=77 Identities=26% Similarity=0.379 Sum_probs=42.4
Q ss_pred HHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhh--------------hHHHHHHHHHHHHHHHHHHHHhh
Q 037586 11 LRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKF--------------KEDAEKMTMEKGQICAQILEKQR 76 (110)
Q Consensus 11 LRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~--------------~ee~e~~~ka~g~i~~~ilekQr 76 (110)
|...|..+|+++.+.-.+=..+..+|.-|+.-+..+..+...| ......-...+-.+-..+.+.+.
T Consensus 10 le~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~ 89 (246)
T PF00769_consen 10 LEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEA 89 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777776667777777766666655555444 44444444555666677777777
Q ss_pred hhhhhhcchhh
Q 037586 77 KIASLESDSST 87 (110)
Q Consensus 77 kiasLe~d~~t 87 (110)
+|+.|+.+...
T Consensus 90 ~i~~l~ee~~~ 100 (246)
T PF00769_consen 90 EIARLEEESER 100 (246)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777655443
No 42
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=68.22 E-value=1.1e+02 Score=30.26 Aligned_cols=100 Identities=15% Similarity=0.257 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHh-hhhhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 037586 3 EYLQYMKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTET-KKFKEDAEKMTMEKGQICAQILEKQRKIASL 81 (110)
Q Consensus 3 eYL~~mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aet-kr~~ee~e~~~ka~g~i~~~ilekQrkiasL 81 (110)
+.-+.++.+|+-+||++.+-.-.--.=+.=...++.+++-|+..++++ +.+..+.+++..-.-.+-.++-.-+..+++|
T Consensus 341 ~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L 420 (1074)
T KOG0250|consen 341 EARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSL 420 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667888888888887755433333334456778888888888888 7777777777777777777777777777777
Q ss_pred hcchhhHHHHHHHHHHHHhhh
Q 037586 82 ESDSSTLSQTLELITQERVSI 102 (110)
Q Consensus 82 e~d~~tL~qtLEll~qe~~s~ 102 (110)
..+.-.+...+.-...|..++
T Consensus 421 ~~e~~~~~~~~~~~~ee~~~i 441 (1074)
T KOG0250|consen 421 REELNEVKEKAKEEEEEKEHI 441 (1074)
T ss_pred HHHHHHHHHHHHHhHHHHHHH
Confidence 777777777666555554443
No 43
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.15 E-value=41 Score=31.89 Aligned_cols=63 Identities=11% Similarity=0.083 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHH
Q 037586 4 YLQYMKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQI 71 (110)
Q Consensus 4 YL~~mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~i 71 (110)
|..-++.|+.++.+++.+...... ..+++.++.++...+.+...+..+.+.+.......-.+|
T Consensus 797 ~~~ei~~l~~qie~l~~~l~~~~~-----~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI 859 (1311)
T TIGR00606 797 FQMELKDVERKIAQQAAKLQGSDL-----DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQI 859 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHhccccc-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555544332111 113444555555555554444444443333333333333
No 44
>PRK09039 hypothetical protein; Validated
Probab=66.45 E-value=73 Score=26.24 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=21.3
Q ss_pred HHHHHhhhhhhhhcchhhHHHHHHHHHHHHhhhhhhh
Q 037586 70 QILEKQRKIASLESDSSTLSQTLELITQERVSISSKL 106 (110)
Q Consensus 70 ~ilekQrkiasLe~d~~tL~qtLEll~qe~~s~s~kl 106 (110)
+|..-+++|++|..-...|...|....+.....-.++
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i 174 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKI 174 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666666665555444443
No 45
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=64.17 E-value=41 Score=26.93 Aligned_cols=67 Identities=9% Similarity=0.182 Sum_probs=32.8
Q ss_pred HHHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 037586 8 MKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQ 75 (110)
Q Consensus 8 mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQ 75 (110)
+++++..+++.+..-.+....=+.++..++..-.++.....++..|..=.. =.|.||..+--+||.=
T Consensus 15 l~~~~~~l~~~~~~~~~~~~~L~~~l~~l~~~~~~~~~l~~~~~~L~~aL~-~~k~rG~wGE~~Le~i 81 (304)
T PF02646_consen 15 LEKFEKRLEESFEQRSEEFGSLKEQLKQLSEANGEIQQLSQEASNLTSALK-NSKTRGNWGEMQLERI 81 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh-CCCchhhHHHHHHHHH
Confidence 344444444444444443333444444444444444444444444443333 3466888777776643
No 46
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=63.46 E-value=13 Score=27.41 Aligned_cols=34 Identities=18% Similarity=0.430 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHH
Q 037586 3 EYLQYMKTLRSQMNDVEDQAAKVSVEEQTQISTIQ 37 (110)
Q Consensus 3 eYL~~mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~ 37 (110)
||-.+.| ||+++|.++++-.+...+...+++.++
T Consensus 64 eFAkwaK-l~Rk~~kl~~el~~~~~~~~~~~~~~~ 97 (161)
T PF04420_consen 64 EFAKWAK-LNRKLDKLEEELEKLNKSLSSEKSSFD 97 (161)
T ss_dssp SHHHHHH-HHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555 455555555555555444444444443
No 47
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=63.22 E-value=79 Score=25.53 Aligned_cols=53 Identities=25% Similarity=0.195 Sum_probs=24.9
Q ss_pred HhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHH
Q 037586 37 QSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLS 89 (110)
Q Consensus 37 ~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~ 89 (110)
+...+|+...+.+.+....+-+..-+..-.+-.|.-+.|++..-|=.|.+.|-
T Consensus 154 ~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq 206 (216)
T KOG1962|consen 154 DKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQ 206 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 44444555555554444444444444444444444444555554444444443
No 48
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=61.10 E-value=30 Score=19.97 Aligned_cols=53 Identities=17% Similarity=0.238 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhh
Q 037586 2 EEYLQYMKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFK 54 (110)
Q Consensus 2 EeYL~~mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ 54 (110)
.+..+.+..|..-+.++..-+.....+=..|...|+.++..+..+....+...
T Consensus 8 ~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~ 60 (66)
T smart00397 8 EERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKAN 60 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45667889999999999999999999999999999999999988877766544
No 49
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=59.40 E-value=36 Score=20.33 Aligned_cols=56 Identities=14% Similarity=0.214 Sum_probs=44.0
Q ss_pred HHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHH
Q 037586 7 YMKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTM 62 (110)
Q Consensus 7 ~mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~k 62 (110)
.+..|-+.+.++=.-+--...|=..|-..|+.++.++..+....++.........+
T Consensus 5 ~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~ 60 (63)
T PF05739_consen 5 ELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALK 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777778888999999999999999999888877766555443
No 50
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=58.45 E-value=69 Score=23.29 Aligned_cols=56 Identities=23% Similarity=0.306 Sum_probs=30.1
Q ss_pred HHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHHHHHHHHHhhhh
Q 037586 34 STIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTLELITQERVSIS 103 (110)
Q Consensus 34 t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtLEll~qe~~s~s 103 (110)
...+.+.++|...+++..++..... -.+.|+..++.+...+.+..+.++++-..++
T Consensus 135 ~~~~~a~~~l~kkk~~~~kl~~~~~--------------~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is 190 (236)
T PF09325_consen 135 IEYQNAEKELQKKKAQLEKLKASGK--------------NRQDKVEQAENEIEEAERRVEQAKDEFEEIS 190 (236)
T ss_pred HHHHHHHHHHHHHHHHHhcccccch--------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777666543210 0144555555555555555555555444443
No 51
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=58.32 E-value=1.7e+02 Score=27.89 Aligned_cols=28 Identities=7% Similarity=0.278 Sum_probs=12.3
Q ss_pred HHhhHhhHHHhhhHhhhhhHHHHHHHHH
Q 037586 36 IQSLENDLVSAKTETKKFKEDAEKMTME 63 (110)
Q Consensus 36 I~a~e~Dl~~v~aetkr~~ee~e~~~ka 63 (110)
|..++.++...+.+.+.++.+.+.....
T Consensus 986 ie~le~e~~~l~~~i~~l~kel~~~~~~ 1013 (1311)
T TIGR00606 986 LEECEKHQEKINEDMRLMRQDIDTQKIQ 1013 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444433333
No 52
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=58.26 E-value=1.8e+02 Score=30.32 Aligned_cols=108 Identities=20% Similarity=0.282 Sum_probs=68.5
Q ss_pred ChHHHHHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhh----------------------------HHHhhhHhhh
Q 037586 1 MEEYLQYMKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLEND----------------------------LVSAKTETKK 52 (110)
Q Consensus 1 MEeYL~~mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~D----------------------------l~~v~aetkr 52 (110)
|+.|..--+++|+-.||+=++-...+.+.....-.|+++..- |+..+.+-++
T Consensus 68 ~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~ 147 (1822)
T KOG4674|consen 68 LSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKD 147 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677788888888777777777776666666655432 2222333333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHHHHHHHHHhhhhhhhhh
Q 037586 53 FKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTLELITQERVSISSKLVE 108 (110)
Q Consensus 53 ~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtLEll~qe~~s~s~kl~e 108 (110)
+.+..-....+.+++-+-.-+.|..-.+++..+..|.|=.++++.+...++..|..
T Consensus 148 l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~ 203 (1822)
T KOG4674|consen 148 LNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSK 203 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33333334444455555555555666677888888888888888888888877653
No 53
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=57.22 E-value=1e+02 Score=24.84 Aligned_cols=29 Identities=21% Similarity=0.452 Sum_probs=13.4
Q ss_pred HHHHHhhhhhhhhcchhhHHHHHHHHHHH
Q 037586 70 QILEKQRKIASLESDSSTLSQTLELITQE 98 (110)
Q Consensus 70 ~ilekQrkiasLe~d~~tL~qtLEll~qe 98 (110)
.|..++++++.|+.+...+.+.++-+..+
T Consensus 224 ~i~~~k~~l~el~~el~~l~~~i~~~~~~ 252 (325)
T PF08317_consen 224 EIEAKKKELAELQEELEELEEKIEELEEQ 252 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 54
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=57.09 E-value=77 Score=23.40 Aligned_cols=58 Identities=21% Similarity=0.476 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHH
Q 037586 2 EEYLQYMKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQ 66 (110)
Q Consensus 2 EeYL~~mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~ 66 (110)
..|++++.+.+...+.+-++.-.. ...++.+......|-+.|..|.+..++|......
T Consensus 3 ~~y~~~L~~~~~~~~~ll~~~~~~-------~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~ 60 (157)
T PF04136_consen 3 RQYLDYLQQYREECDQLLDQTDEI-------LDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTR 60 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 367888888877777766554332 3456777788888888888888877776665544
No 55
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=56.71 E-value=1.9e+02 Score=29.01 Aligned_cols=96 Identities=20% Similarity=0.325 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhhhHHHHHhhhh--HHHHHH-----HHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 037586 5 LQYMKTLRSQMNDVEDQAAKVS--VEEQTQ-----ISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRK 77 (110)
Q Consensus 5 L~~mktLRs~MnD~Ed~AAkvS--vEeq~Q-----~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrk 77 (110)
+.+.++-|+...+++..-+.+- +|++.| ..-++.+++|+..+..+-+.++.+.--+...+-.|-..+--|++.
T Consensus 670 ~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~ 749 (1200)
T KOG0964|consen 670 LKNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKE 749 (1200)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHH
Confidence 3456666777777776655543 334432 234677888888888888888888887777777777777777777
Q ss_pred hhhhhcchhhHHHHHHHHHHHHh
Q 037586 78 IASLESDSSTLSQTLELITQERV 100 (110)
Q Consensus 78 iasLe~d~~tL~qtLEll~qe~~ 100 (110)
|-.+...--++.+..+-+.+|.-
T Consensus 750 Le~i~~~l~~~~~~~~~~e~el~ 772 (1200)
T KOG0964|consen 750 LEEIKTSLHKLESQSNYFESELG 772 (1200)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHh
Confidence 77776666666666665555543
No 56
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=55.19 E-value=1.5e+02 Score=26.67 Aligned_cols=31 Identities=26% Similarity=0.452 Sum_probs=16.9
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 037586 48 TETKKFKEDAEKMTMEKGQICAQILEKQRKI 78 (110)
Q Consensus 48 aetkr~~ee~e~~~ka~g~i~~~ilekQrki 78 (110)
++..++..+.+++...+.+.-..|...|+++
T Consensus 109 ~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 109 SETQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555554
No 57
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=55.12 E-value=72 Score=22.51 Aligned_cols=48 Identities=19% Similarity=0.329 Sum_probs=26.2
Q ss_pred HHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 037586 34 STIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASL 81 (110)
Q Consensus 34 t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasL 81 (110)
+.+..+++|+........+|++..+..-+.-+.+....-..+.++.++
T Consensus 59 ~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~ 106 (151)
T PF11559_consen 59 DKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSL 106 (151)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667776666666666666655554444443333333333333
No 58
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=55.11 E-value=1.5e+02 Score=26.17 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=13.0
Q ss_pred HHHHHhhhhhhhhcchhhHHHHHHHHHHH
Q 037586 70 QILEKQRKIASLESDSSTLSQTLELITQE 98 (110)
Q Consensus 70 ~ilekQrkiasLe~d~~tL~qtLEll~qe 98 (110)
-+.|+|.-.+.|+.+-.+-.+-|+-|...
T Consensus 204 ~~~E~kk~~~~l~~~l~~~q~~l~eL~~~ 232 (420)
T COG4942 204 LLEERKKTLAQLNSELSADQKKLEELRAN 232 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444444444444444444444444433
No 59
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=54.81 E-value=95 Score=23.80 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=21.9
Q ss_pred hHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 037586 39 LENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLES 83 (110)
Q Consensus 39 ~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~ 83 (110)
+..++..++.|...++...+++.+.-...-..|.+-+++|..++.
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~ 98 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEE 98 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444445555555555443
No 60
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=54.80 E-value=1.4e+02 Score=25.69 Aligned_cols=19 Identities=16% Similarity=0.284 Sum_probs=7.4
Q ss_pred HhhhhhhhhcchhhHHHHH
Q 037586 74 KQRKIASLESDSSTLSQTL 92 (110)
Q Consensus 74 kQrkiasLe~d~~tL~qtL 92 (110)
-+.++..+......+++.|
T Consensus 351 L~~el~~l~~~l~~~a~~L 369 (563)
T TIGR00634 351 LEEEVDKLEEELDKAAVAL 369 (563)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444333333333
No 61
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=54.38 E-value=1e+02 Score=23.95 Aligned_cols=23 Identities=13% Similarity=0.297 Sum_probs=10.7
Q ss_pred HHHhhHhhHHHhhhHhhhhhHHH
Q 037586 35 TIQSLENDLVSAKTETKKFKEDA 57 (110)
Q Consensus 35 ~I~a~e~Dl~~v~aetkr~~ee~ 57 (110)
.|..+++.+..++++.+.++++.
T Consensus 159 ~i~~~~~~l~~~~~~l~~~~~~~ 181 (423)
T TIGR01843 159 ELAGLQAQLQALRQQLEVISEEL 181 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555444444433
No 62
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=54.21 E-value=1.5e+02 Score=25.98 Aligned_cols=60 Identities=20% Similarity=0.202 Sum_probs=32.1
Q ss_pred HHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHHHHHHHHH
Q 037586 36 IQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTLELITQER 99 (110)
Q Consensus 36 I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtLEll~qe~ 99 (110)
+..++.+++.+++.-+.+......+- +++ .++-..+.++..|+.|..+..+.++.+.+-.
T Consensus 340 ~~~~~~~~~~a~~~~~~L~~~l~~~~---~~~-~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~ 399 (754)
T TIGR01005 340 TKSLLMQADAAQARESQLVSDVNQLK---AAS-AQAGEQQVDLDALQRDAAAKRQLYESYLTNY 399 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-HhCcHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554444444333332 222 2344556677777777777777776665443
No 63
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=53.95 E-value=1.2e+02 Score=24.73 Aligned_cols=73 Identities=19% Similarity=0.335 Sum_probs=40.7
Q ss_pred HHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-------hhhHHHHHHHHHHHHhhhhhh
Q 037586 33 ISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESD-------SSTLSQTLELITQERVSISSK 105 (110)
Q Consensus 33 ~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d-------~~tL~qtLEll~qe~~s~s~k 105 (110)
-..+..++..+.....|-+++.++.+.+-+.+.++-.+|...+.+...|+.+ -..+..-+--+.+|+.|+.+.
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q 121 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQ 121 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666666666666666656555555433 223333344445566665544
No 64
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=53.81 E-value=1.4e+02 Score=25.32 Aligned_cols=80 Identities=20% Similarity=0.319 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHH----H---HHHHHHHHHHhhhhhhhhcchhhHHHHHHHHHHH
Q 037586 26 SVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTME----K---GQICAQILEKQRKIASLESDSSTLSQTLELITQE 98 (110)
Q Consensus 26 SvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka----~---g~i~~~ilekQrkiasLe~d~~tL~qtLEll~qe 98 (110)
+.|++-|.-+++ .=+.|..|+.+...|+++..+.... . ..+-++|...|.|...+=.+-.-|.+-|..-+.-
T Consensus 192 ~~EekEqqLv~d-cv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~ 270 (306)
T PF04849_consen 192 TYEEKEQQLVLD-CVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKES 270 (306)
T ss_pred hccHHHHHHHHH-HHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 577777776555 5678899999999998886654432 2 3345677777777777777777777777665544
Q ss_pred Hhhhhhhh
Q 037586 99 RVSISSKL 106 (110)
Q Consensus 99 ~~s~s~kl 106 (110)
-..+.+.|
T Consensus 271 Q~~L~aEL 278 (306)
T PF04849_consen 271 QRQLQAEL 278 (306)
T ss_pred HHHHHHHH
Confidence 44444444
No 65
>cd07607 BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins with similarity to Arabidopsis thaliana SH3 domain-containing proteins 1 (SH3P1) and 2 (SH3P2). SH3P1 is involved in the trafficking of clathrin-coated vesicles. It is localized at the plasma membrane and is associated with vesicles of the trans-Golgi network. Yeast complementation studies reveal that SH3P1 has similar functions to the Saccharomyces cerevisiae Rvs167p, which is involved in endocytosis and actin cytoskeletal arrangement. Members of this group contain an N-terminal BAR domain and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be i
Probab=51.26 E-value=92 Score=25.50 Aligned_cols=35 Identities=37% Similarity=0.471 Sum_probs=27.9
Q ss_pred HHHHHHHHhhhH--HHHHhhhhHHHHHHHHHHHhhHh
Q 037586 7 YMKTLRSQMNDV--EDQAAKVSVEEQTQISTIQSLEN 41 (110)
Q Consensus 7 ~mktLRs~MnD~--Ed~AAkvSvEeq~Q~t~I~a~e~ 41 (110)
.|--|.|-|+-+ |--||--+||-|+|+.|.+-|=+
T Consensus 151 Kl~elks~M~~LGKEA~aAm~aVEaQQQrlTlqRL~a 187 (209)
T cd07607 151 KLDELKSSMNTLGKEATSAMLAVEDQQQQVTLQRLLA 187 (209)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888887 45567789999999999988744
No 66
>PHA02562 46 endonuclease subunit; Provisional
Probab=51.14 E-value=1.4e+02 Score=24.63 Aligned_cols=39 Identities=23% Similarity=0.228 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHHH
Q 037586 55 EDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTLE 93 (110)
Q Consensus 55 ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtLE 93 (110)
++.+.+......+-.++-.-+.+|..+..+-..+...|.
T Consensus 220 ~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~ 258 (562)
T PHA02562 220 NKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALN 258 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 333333333333333443444444444333333333333
No 67
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=50.80 E-value=1e+02 Score=22.94 Aligned_cols=87 Identities=14% Similarity=0.265 Sum_probs=49.6
Q ss_pred hhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHHHH
Q 037586 15 MNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTLEL 94 (110)
Q Consensus 15 MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtLEl 94 (110)
++++.+...+.-.+-+.....|..+++.+..-+.+.+.+.++...+.+.-- --+-++.+|-.....+.+.+.-
T Consensus 97 L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e-------~l~DE~~~L~l~~~~~e~k~~~ 169 (194)
T PF08614_consen 97 LVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANE-------ILQDELQALQLQLNMLEEKLRK 169 (194)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445556667777777777777777777777776665433 2346667777777777788888
Q ss_pred HHHHHhhhhhhhhh
Q 037586 95 ITQERVSISSKLVE 108 (110)
Q Consensus 95 l~qe~~s~s~kl~e 108 (110)
++.|-..+--+++.
T Consensus 170 l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 170 LEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888777766654
No 68
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=50.60 E-value=2e+02 Score=26.24 Aligned_cols=58 Identities=28% Similarity=0.449 Sum_probs=38.0
Q ss_pred HHHhhHhhHHHhhhHhhh-------hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHH
Q 037586 35 TIQSLENDLVSAKTETKK-------FKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTL 92 (110)
Q Consensus 35 ~I~a~e~Dl~~v~aetkr-------~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtL 92 (110)
-|+.++..|...+.+..+ +....+.+...+..+-.+..+...+|..||.|..+|.+..
T Consensus 172 ~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 172 EVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555444444444 4444555566666677777788889999999998887776
No 69
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=49.97 E-value=66 Score=24.68 Aligned_cols=54 Identities=20% Similarity=0.268 Sum_probs=26.2
Q ss_pred HhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHH
Q 037586 37 QSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQ 90 (110)
Q Consensus 37 ~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~q 90 (110)
..+..+|.-+......+....+..-+..-.+=..+..-+|+|..||.+.-...+
T Consensus 4 ~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~ee 57 (237)
T PF00261_consen 4 QQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEE 57 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 344444444444444444444444444444444444556666666655544333
No 70
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=49.86 E-value=95 Score=22.33 Aligned_cols=87 Identities=13% Similarity=0.288 Sum_probs=42.2
Q ss_pred HHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHH
Q 037586 12 RSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQT 91 (110)
Q Consensus 12 Rs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qt 91 (110)
...+.+++..-.....+-....-....+..++..++.....+++....+.+.-..+...+.+.+.++..+......+.+.
T Consensus 94 ~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 173 (191)
T PF04156_consen 94 QEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQEN 173 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444333333333333344444555555555555555555555555544444555555555555555555544
Q ss_pred HHHHHHH
Q 037586 92 LELITQE 98 (110)
Q Consensus 92 LEll~qe 98 (110)
++-+.+-
T Consensus 174 ~~~l~~~ 180 (191)
T PF04156_consen 174 LQQLEEK 180 (191)
T ss_pred HHHHHHH
Confidence 4444433
No 71
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=49.10 E-value=2.9e+02 Score=28.89 Aligned_cols=97 Identities=18% Similarity=0.301 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhh-
Q 037586 2 EEYLQYMKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIAS- 80 (110)
Q Consensus 2 EeYL~~mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkias- 80 (110)
++++.+|+.+--++-|+-.+.--.+.-.+-=.......++=++.+++|...++.+.+...++|...-.+..|...+|+.
T Consensus 1628 ~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~ 1707 (1930)
T KOG0161|consen 1628 EDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNEL 1707 (1930)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q ss_pred -------------hhcchhhHHHHHHHHHHH
Q 037586 81 -------------LESDSSTLSQTLELITQE 98 (110)
Q Consensus 81 -------------Le~d~~tL~qtLEll~qe 98 (110)
||.+-.+|.-+|+-..++
T Consensus 1708 ~~~~s~l~~~KrklE~~i~~l~~elee~~~~ 1738 (1930)
T KOG0161|consen 1708 NAQNSSLTAEKRKLEAEIAQLQSELEEEQSE 1738 (1930)
T ss_pred hhcccchhhHHHHHHHHHHHHHHHHHHHHHH
No 72
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=48.55 E-value=1.1e+02 Score=22.67 Aligned_cols=52 Identities=27% Similarity=0.358 Sum_probs=28.8
Q ss_pred HHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHH
Q 037586 9 KTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKM 60 (110)
Q Consensus 9 ktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~ 60 (110)
+.|.-++.|+|+.-.++-..-..+++.-..+++.+.....+.......+..-
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~A 77 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELA 77 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566665555555555555555556666666655555555555443
No 73
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=48.44 E-value=2.4e+02 Score=26.54 Aligned_cols=92 Identities=20% Similarity=0.330 Sum_probs=67.3
Q ss_pred HhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHH--------------------HHHHHHHHHHHHHHHHH
Q 037586 14 QMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKED--------------------AEKMTMEKGQICAQILE 73 (110)
Q Consensus 14 ~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee--------------------~e~~~ka~g~i~~~ile 73 (110)
.++-+.++.-..-.+-|....+|++|...| .+..+..|+..+ .+.+-..+-.....+..
T Consensus 54 ~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El~~ 132 (775)
T PF10174_consen 54 ELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRELER 132 (775)
T ss_pred HHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556667788889999999999 887777777665 22333344445667777
Q ss_pred HhhhhhhhhcchhhHHHHHHHHHHHHhhhhhhh
Q 037586 74 KQRKIASLESDSSTLSQTLELITQERVSISSKL 106 (110)
Q Consensus 74 kQrkiasLe~d~~tL~qtLEll~qe~~s~s~kl 106 (110)
.+..+-.++....++.++|.-..-++..+...|
T Consensus 133 lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L 165 (775)
T PF10174_consen 133 LRKTLEELQLRIETQQQTLDKADEEIEKLQEML 165 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888889999999999998888888777665
No 74
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=48.09 E-value=19 Score=26.80 Aligned_cols=58 Identities=21% Similarity=0.370 Sum_probs=12.9
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHHHHHHHHHhhhhhhh
Q 037586 49 ETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTLELITQERVSISSKL 106 (110)
Q Consensus 49 etkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtLEll~qe~~s~s~kl 106 (110)
..-++.+|...+-+.+|+...++.....++..++.........|.-+..++.++..++
T Consensus 75 ~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~ 132 (194)
T PF08614_consen 75 KLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKI 132 (194)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777887777777777777777777777777777777776666554
No 75
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=47.03 E-value=3e+02 Score=27.22 Aligned_cols=104 Identities=19% Similarity=0.241 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHH---HHHHHHHHHHHHHhhhh
Q 037586 2 EEYLQYMKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMT---MEKGQICAQILEKQRKI 78 (110)
Q Consensus 2 EeYL~~mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~---ka~g~i~~~ilekQrki 78 (110)
+++-..+-.++++.+++.+...-..-.-+.-..--+.++++|.....+...++++..++- +..-+|-.+....-.+|
T Consensus 451 eele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l 530 (1041)
T KOG0243|consen 451 EELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKL 530 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667888888888888644443344444556677777777777777777766543 34455555555544444
Q ss_pred hhhhcchhhHHHHHHHHHHHHhhhhhhhhh
Q 037586 79 ASLESDSSTLSQTLELITQERVSISSKLVE 108 (110)
Q Consensus 79 asLe~d~~tL~qtLEll~qe~~s~s~kl~e 108 (110)
-.. ...|-..++--+.+..++..||-.
T Consensus 531 ~~~---a~~l~~~~~~s~~d~s~l~~kld~ 557 (1041)
T KOG0243|consen 531 VDR---ATKLRRSLEESQDDLSSLFEKLDR 557 (1041)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444 667888888888888888888743
No 76
>PRK10884 SH3 domain-containing protein; Provisional
Probab=46.88 E-value=1.4e+02 Score=23.34 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhhhHHHHHhhhhH
Q 037586 4 YLQYMKTLRSQMNDVEDQAAKVSV 27 (110)
Q Consensus 4 YL~~mktLRs~MnD~Ed~AAkvSv 27 (110)
||..-.++|..+-.+|.+-++...
T Consensus 84 ~Ls~~p~~~~rlp~le~el~~l~~ 107 (206)
T PRK10884 84 QLSTTPSLRTRVPDLENQVKTLTD 107 (206)
T ss_pred HhcCCccHHHHHHHHHHHHHHHHH
Confidence 555555666666666655555443
No 77
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=46.28 E-value=3e+02 Score=27.02 Aligned_cols=94 Identities=16% Similarity=0.240 Sum_probs=69.7
Q ss_pred HHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHH
Q 037586 10 TLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLS 89 (110)
Q Consensus 10 tLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~ 89 (110)
-+|..++-+|-.+++-..+=..+...++.++.-++..+.+.-.+..+...+...-+-...-+...-+-|+.|+.+..-..
T Consensus 931 p~~~~~~~~e~~~~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~a~~Li~~Ls~e~~rW~ 1010 (1395)
T KOG3595|consen 931 PKRQELARLEAELKAAMKELEEKSAELQDLEEKLQRLKDEYEQLIAEKQELEEDMDACELKLLRAEELIQGLSGEKERWS 1010 (1395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 35777888888888888887778888887777777766666666666666666666666666667777888999998899
Q ss_pred HHHHHHHHHHhhhh
Q 037586 90 QTLELITQERVSIS 103 (110)
Q Consensus 90 qtLEll~qe~~s~s 103 (110)
++++.+.+....++
T Consensus 1011 ~~~~~~~~~~~~l~ 1024 (1395)
T KOG3595|consen 1011 ETSEQFSKQYSRLV 1024 (1395)
T ss_pred HHHHHHHHHHhhhh
Confidence 99888877765543
No 78
>PRK04863 mukB cell division protein MukB; Provisional
Probab=45.65 E-value=3.3e+02 Score=27.38 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=7.4
Q ss_pred HHHHHHHhhhHHHHHh
Q 037586 8 MKTLRSQMNDVEDQAA 23 (110)
Q Consensus 8 mktLRs~MnD~Ed~AA 23 (110)
+..|-..++.++.++.
T Consensus 316 L~ELe~rL~kLEkQaE 331 (1486)
T PRK04863 316 LAELNEAESDLEQDYQ 331 (1486)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444555554443
No 79
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=45.36 E-value=3.8e+02 Score=28.05 Aligned_cols=79 Identities=20% Similarity=0.276 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHHHHHHHHHhhhhhh
Q 037586 26 SVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTLELITQERVSISSK 105 (110)
Q Consensus 26 SvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtLEll~qe~~s~s~k 105 (110)
++.++....-|..|+.+|..++.. +.++.+.+-.-.+..-.++..-|..|..+.++...+...|-....++..+..+
T Consensus 797 ~~~k~~~e~~i~eL~~el~~lk~k---lq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k 873 (1822)
T KOG4674|consen 797 MATKDKCESRIKELERELQKLKKK---LQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIK 873 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677778899999999999977 66667777777788889999999999999999999888888888888887777
Q ss_pred hh
Q 037586 106 LV 107 (110)
Q Consensus 106 l~ 107 (110)
+.
T Consensus 874 ~~ 875 (1822)
T KOG4674|consen 874 LS 875 (1822)
T ss_pred HH
Confidence 64
No 80
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=45.16 E-value=97 Score=25.63 Aligned_cols=56 Identities=13% Similarity=0.180 Sum_probs=48.2
Q ss_pred HHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHHHHHHHHH
Q 037586 44 VSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTLELITQER 99 (110)
Q Consensus 44 ~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtLEll~qe~ 99 (110)
+.=..|-|+|.++-+.+.+.+..+-..|..|+..+++|+..-.+|..+.+=++.-.
T Consensus 97 ~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l 152 (355)
T PF09766_consen 97 EFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYL 152 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 33446678999999999999999999999999999999999999998887776543
No 81
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=44.83 E-value=1.4e+02 Score=22.91 Aligned_cols=74 Identities=20% Similarity=0.221 Sum_probs=41.4
Q ss_pred HhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHHHHHHHH
Q 037586 22 AAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTLELITQE 98 (110)
Q Consensus 22 AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtLEll~qe 98 (110)
+.....|--.-+..|+.+..+|...++....|...... ..+....+.-..|..|+.||.+-..+..-+.-..+|
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~---le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~e 284 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRE---LEQRLDEEREEYQAEIAELEEELAELREEMARQLRE 284 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHH---HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Confidence 33334444455667777777777777766666554433 233444444555566666666666655555444433
No 82
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=44.30 E-value=2.2e+02 Score=26.35 Aligned_cols=61 Identities=18% Similarity=0.281 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHH
Q 037586 29 EQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLS 89 (110)
Q Consensus 29 eq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~ 89 (110)
++.=+-.+.+|..|+...++=..+++.-..-|.+.=..+.+.|-+|-.+|.+|-..-.-|+
T Consensus 261 ~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk 321 (581)
T KOG0995|consen 261 EESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELK 321 (581)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556667777777777766666666666666666666666666666655544444433
No 83
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=43.91 E-value=2.2e+02 Score=24.73 Aligned_cols=80 Identities=19% Similarity=0.307 Sum_probs=41.3
Q ss_pred HHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhh-------cchhhHHHHHH
Q 037586 21 QAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLE-------SDSSTLSQTLE 93 (110)
Q Consensus 21 ~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe-------~d~~tL~qtLE 93 (110)
.-.++-.|.-.=+..+..|..+|+.++.+..++++...-....-+.+-+.+..-+.+|..+. .....|..+|.
T Consensus 296 ~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lq 375 (522)
T PF05701_consen 296 ELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQ 375 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 33344445445556667777777777777776666443333333333344444455553332 22345555665
Q ss_pred HHHHHHh
Q 037586 94 LITQERV 100 (110)
Q Consensus 94 ll~qe~~ 100 (110)
-+..|..
T Consensus 376 ql~~Eae 382 (522)
T PF05701_consen 376 QLSSEAE 382 (522)
T ss_pred HHHHHHH
Confidence 5555543
No 84
>PRK03918 chromosome segregation protein; Provisional
Probab=43.11 E-value=2.3e+02 Score=24.86 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=8.6
Q ss_pred HHHhhhhhhhhcchhhHHHHHHH
Q 037586 72 LEKQRKIASLESDSSTLSQTLEL 94 (110)
Q Consensus 72 lekQrkiasLe~d~~tL~qtLEl 94 (110)
-+..+++..++.+...+...++-
T Consensus 676 ~~l~~~~~~l~~~i~~l~~~i~~ 698 (880)
T PRK03918 676 AGLRAELEELEKRREEIKKTLEK 698 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 85
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=42.98 E-value=2.2e+02 Score=24.64 Aligned_cols=65 Identities=18% Similarity=0.248 Sum_probs=29.9
Q ss_pred HHHHHhhHhhHHHhhhHh-------hhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHHHHHHH
Q 037586 33 ISTIQSLENDLVSAKTET-------KKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTLELITQ 97 (110)
Q Consensus 33 ~t~I~a~e~Dl~~v~aet-------kr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtLEll~q 97 (110)
...|..|+.+|...+++. ++.++....|..+=-++....=+-.......-.+...+...+|-.+.
T Consensus 336 ~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka 407 (522)
T PF05701_consen 336 SSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKA 407 (522)
T ss_pred HhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666655554 44444444454444444444433333333333333333333333333
No 86
>TIGR01801 CM_A chorismate mutase domain of gram positive AroA protein. This model represents a small clade of chorismate mutase domains N-terminally fused to the first enzyme in the chorismate pathway, 2-dehydro-3-deoxyphosphoheptanoate aldolase (DAHP synthetase, AroA) which are found in some gram positive species and Deinococcus. Only in Deinococcus, where this domain is the sole CM domain in the genome can a trusted assignment of function be made. In the other species there is at least one other trusted CM domain present. The similarity between the Deinococcus gene and the others in this clade is sufficiently strong (~44% identity), that the whole clade can be trusted to be functional. The possibility exists, however, that in the gram positive species the fusion to the first enzyme in the pathway has evolved a separate, regulatory role.
Probab=42.42 E-value=58 Score=22.67 Aligned_cols=66 Identities=17% Similarity=0.229 Sum_probs=44.6
Q ss_pred hhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhh-----------------hhhhhhcchhhHHHHHHHHHHHHhhhh
Q 037586 41 NDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQR-----------------KIASLESDSSTLSQTLELITQERVSIS 103 (110)
Q Consensus 41 ~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQr-----------------kiasLe~d~~tL~qtLEll~qe~~s~s 103 (110)
++|+..|++...++.+.=.+...|..++..|.+--. ++.... ..--....++-|-+++.+.|
T Consensus 4 ~~L~~lR~~ID~ID~eIl~LL~eR~~~~~~Ig~~K~~~~~~i~dp~RE~~vl~~~~~~~-~g~l~~~~i~~If~~I~~~S 82 (102)
T TIGR01801 4 QSLEDLRAEVDQLNRQILALISRRGEVVAQIGHAKSAQGPNHYDPAREEQMLNELIKIN-PGPFPTATIKGIFKEIFKAS 82 (102)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHH
Confidence 468888888899999999999999999998877543 222211 11123456666777777766
Q ss_pred hhhh
Q 037586 104 SKLV 107 (110)
Q Consensus 104 ~kl~ 107 (110)
-.+-
T Consensus 83 r~~Q 86 (102)
T TIGR01801 83 LALQ 86 (102)
T ss_pred HHHH
Confidence 6543
No 87
>PF08641 Mis14: Kinetochore protein Mis14 like; InterPro: IPR013950 Mis14 is a kinetochore protein which is known to be recruited to kinetochores independently of CENP-A [].
Probab=41.97 E-value=1.1e+02 Score=21.98 Aligned_cols=15 Identities=33% Similarity=0.286 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHhhhh
Q 037586 64 KGQICAQILEKQRKI 78 (110)
Q Consensus 64 ~g~i~~~ilekQrki 78 (110)
.++-.++++.-|..|
T Consensus 125 ~~~~l~~l~~~q~~i 139 (139)
T PF08641_consen 125 YAEGLSQLLELQPNI 139 (139)
T ss_pred HHHHHHHHHHhcccC
Confidence 555555555555443
No 88
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=41.56 E-value=1.6e+02 Score=22.64 Aligned_cols=68 Identities=16% Similarity=0.252 Sum_probs=35.2
Q ss_pred HHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHHHHHHHHHh
Q 037586 33 ISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTLELITQERV 100 (110)
Q Consensus 33 ~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtLEll~qe~~ 100 (110)
..-++.+|..+.....++..+.+.+.....-.+.+-...-+-..+-..|+.+...+-+.+.-|-.+..
T Consensus 44 ~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~ 111 (264)
T PF06008_consen 44 KQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVE 111 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555555555555554444455555555555555555544444433
No 89
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=40.60 E-value=2.5e+02 Score=24.56 Aligned_cols=29 Identities=14% Similarity=0.299 Sum_probs=13.2
Q ss_pred HHHHhhHhhHHHhhhHhhhhhHHHHHHHH
Q 037586 34 STIQSLENDLVSAKTETKKFKEDAEKMTM 62 (110)
Q Consensus 34 t~I~a~e~Dl~~v~aetkr~~ee~e~~~k 62 (110)
..+..+++++...+++...+.++.+.+.+
T Consensus 428 e~l~~l~~~l~~~~~~~~~~~~~~~~~~~ 456 (650)
T TIGR03185 428 EELGEAQNELFRSEAEIEELLRQLETLKE 456 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555544444444444444333
No 90
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=40.18 E-value=2.6e+02 Score=24.52 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcchh-------hHHHHHHHHHHHHhhhhhh
Q 037586 59 KMTMEKGQICAQILEKQRKIASLESDSS-------TLSQTLELITQERVSISSK 105 (110)
Q Consensus 59 ~~~ka~g~i~~~ilekQrkiasLe~d~~-------tL~qtLEll~qe~~s~s~k 105 (110)
++-.....+-.+..+...++..+-.++. .+.++.+.+..|..+...+
T Consensus 266 ~Le~ei~~le~e~~e~~~~l~~l~~~~~p~~l~~~ll~~~~~q~~~e~~~~~~~ 319 (650)
T TIGR03185 266 QLERQLKEIEAARKANRAQLRELAADPLPLLLIPNLLDSTKAQLQKEEQSQQNQ 319 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444455555555554442 3445555555665544333
No 91
>PF13514 AAA_27: AAA domain
Probab=39.57 E-value=3.3e+02 Score=25.55 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=28.4
Q ss_pred hHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 037586 42 DLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESD 84 (110)
Q Consensus 42 Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d 84 (110)
|+..+..+...+..+.+.+......+-.++.+.+.+|..|+.+
T Consensus 890 d~~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~ 932 (1111)
T PF13514_consen 890 DPDELEAELEELEEELEELEEELEELQEERAELEQELEALEGD 932 (1111)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4455555566666666666666666777777777777777654
No 92
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=39.46 E-value=97 Score=19.45 Aligned_cols=73 Identities=16% Similarity=0.303 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHH-HHHHHHHHHHHHHhhhhhhhh
Q 037586 4 YLQYMKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMT-MEKGQICAQILEKQRKIASLE 82 (110)
Q Consensus 4 YL~~mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~-ka~g~i~~~ilekQrkiasLe 82 (110)
|-.....+++.++.+-... . + .=..+|+..+.+|..|..-.+++.-|+-.+- ..|+.+...|-.-+..+.+|.
T Consensus 1 f~~l~~~i~~~l~~~~~~~----~-~-~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk 74 (79)
T PF05008_consen 1 FQALTAEIKSKLERIKNLS----G-E-QRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLK 74 (79)
T ss_dssp HHHHHHHHHHHHHHGGGS-----C-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhccC----h-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666655222 1 2 3356789999999999999999998888774 455555555555555555444
No 93
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=39.00 E-value=2e+02 Score=25.83 Aligned_cols=36 Identities=22% Similarity=0.375 Sum_probs=25.2
Q ss_pred HHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHH
Q 037586 36 IQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQI 71 (110)
Q Consensus 36 I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~i 71 (110)
.+.++++++.+.++-++|++|-+++.+....|-.+|
T Consensus 68 ~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i 103 (472)
T TIGR03752 68 VKELRKRLAKLISENEALKAENERLQKREQSIDQQI 103 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 355677777777777888888887777666555555
No 94
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.68 E-value=2.2e+02 Score=26.13 Aligned_cols=74 Identities=28% Similarity=0.288 Sum_probs=55.5
Q ss_pred HHHHHhhHhhHHHhhhHhhhhhHHHHHHHHH---------HHHHHHHHHHHhhhhhhhhcchhhHHHHHHHHHHHHhhhh
Q 037586 33 ISTIQSLENDLVSAKTETKKFKEDAEKMTME---------KGQICAQILEKQRKIASLESDSSTLSQTLELITQERVSIS 103 (110)
Q Consensus 33 ~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka---------~g~i~~~ilekQrkiasLe~d~~tL~qtLEll~qe~~s~s 103 (110)
+.-|+.+|.||..+-.|..+-.+..+++..+ |-..--.|.|--+-|-+.+.|.+-+..--.-|+++..|.|
T Consensus 344 ~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~s 423 (521)
T KOG1937|consen 344 IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSES 423 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999988888666666666554 3333446777777888888888876655555678888888
Q ss_pred hhh
Q 037586 104 SKL 106 (110)
Q Consensus 104 ~kl 106 (110)
.+|
T Consensus 424 e~L 426 (521)
T KOG1937|consen 424 EAL 426 (521)
T ss_pred HHH
Confidence 887
No 95
>PRK09039 hypothetical protein; Validated
Probab=36.56 E-value=2.4e+02 Score=23.22 Aligned_cols=48 Identities=6% Similarity=0.144 Sum_probs=27.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHHHHHH
Q 037586 49 ETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTLELIT 96 (110)
Q Consensus 49 etkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtLEll~ 96 (110)
+..+|..+++.+-.+.+.+-+.|-..+.+.+.....-..|.+.|+...
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666665555555555555555555555443
No 96
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=36.29 E-value=2.1e+02 Score=22.37 Aligned_cols=41 Identities=27% Similarity=0.496 Sum_probs=22.2
Q ss_pred HHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 037586 36 IQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESD 84 (110)
Q Consensus 36 I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d 84 (110)
+..|++.+.....+...+.+|-+-| ..|++.=|+++.+|.|
T Consensus 120 ~e~Le~e~~~L~~~~~~~~eDY~~L--------~~Im~RARkl~~~~~~ 160 (161)
T TIGR02894 120 NEELEKELEKLRQRLSTIEEDYQTL--------IDIMDRARKLAVVEDD 160 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhccc
Confidence 4455555555555555555554443 3566666666666543
No 97
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=36.16 E-value=2e+02 Score=24.30 Aligned_cols=73 Identities=21% Similarity=0.301 Sum_probs=48.6
Q ss_pred HHhhHhhHHHhhhHhhhhhHHHHHHHHHH----HHHHHHHHHHhhhhhhhhcchhhHHHHHHHHHHHHhhhhhhhhh
Q 037586 36 IQSLENDLVSAKTETKKFKEDAEKMTMEK----GQICAQILEKQRKIASLESDSSTLSQTLELITQERVSISSKLVE 108 (110)
Q Consensus 36 I~a~e~Dl~~v~aetkr~~ee~e~~~ka~----g~i~~~ilekQrkiasLe~d~~tL~qtLEll~qe~~s~s~kl~e 108 (110)
+..||-+-..-|.|+-+|+.++...-..- -..+.++.+.-.+|+.|..+-+.-..-...-+.|+.++-+.++.
T Consensus 169 lk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqivd 245 (306)
T PF04849_consen 169 LKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVD 245 (306)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777775544322211 12455677777778888777777777777778888888877764
No 98
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=35.95 E-value=99 Score=19.11 Aligned_cols=33 Identities=33% Similarity=0.461 Sum_probs=18.3
Q ss_pred HHHHhhhhhhhhcchhhHHHHHHHHHHHHhhhh
Q 037586 71 ILEKQRKIASLESDSSTLSQTLELITQERVSIS 103 (110)
Q Consensus 71 ilekQrkiasLe~d~~tL~qtLEll~qe~~s~s 103 (110)
|-+-+.++..|+.+...|...+..|.++..++.
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555556666666655555544
No 99
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=35.81 E-value=1.3e+02 Score=19.87 Aligned_cols=55 Identities=25% Similarity=0.370 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHHHHHHHHHhhhhhhh
Q 037586 52 KFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTLELITQERVSISSKL 106 (110)
Q Consensus 52 r~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtLEll~qe~~s~s~kl 106 (110)
+|-+|-+.+.+.--.....|-.-.-++..+|.....++..++-..++..++..+|
T Consensus 16 ~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 16 QLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444433333333333333444444444444444444444444444333
No 100
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=35.71 E-value=1.2e+02 Score=21.48 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHH
Q 037586 26 SVEEQTQISTIQSLENDLVSAKTETKKFKEDAEK 59 (110)
Q Consensus 26 SvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~ 59 (110)
|.+-|.=-..++.+..|...+++.....++|+++
T Consensus 30 ss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~R 63 (85)
T PRK09973 30 ASNVQTLNAKIARLEQDMKALRPQIYAAKSEANR 63 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455666667777777766666666643
No 101
>PHA02562 46 endonuclease subunit; Provisional
Probab=35.57 E-value=2.5e+02 Score=23.14 Aligned_cols=16 Identities=13% Similarity=0.356 Sum_probs=7.7
Q ss_pred HHHHHHHHhhhHHHHH
Q 037586 7 YMKTLRSQMNDVEDQA 22 (110)
Q Consensus 7 ~mktLRs~MnD~Ed~A 22 (110)
.++.|+++.+.+++.-
T Consensus 307 ~i~~l~~~l~~l~~~i 322 (562)
T PHA02562 307 KLKELQHSLEKLDTAI 322 (562)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444555555554443
No 102
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=35.43 E-value=1.4e+02 Score=20.28 Aligned_cols=22 Identities=14% Similarity=0.601 Sum_probs=18.1
Q ss_pred ChHHHHHHHHHHHHhhhHHHHH
Q 037586 1 MEEYLQYMKTLRSQMNDVEDQA 22 (110)
Q Consensus 1 MEeYL~~mktLRs~MnD~Ed~A 22 (110)
|++|+.....++..|..+....
T Consensus 1 ~~~F~~~v~~I~~~i~~i~~~v 22 (151)
T cd00179 1 LEEFFEEVEEIRGNIDKISEDV 22 (151)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH
Confidence 7889998888888888887664
No 103
>smart00338 BRLZ basic region leucin zipper.
Probab=34.17 E-value=1.2e+02 Score=18.79 Aligned_cols=31 Identities=23% Similarity=0.422 Sum_probs=16.7
Q ss_pred HHHhhHhhHHHhhhHhhhhhHHHHHHHHHHH
Q 037586 35 TIQSLENDLVSAKTETKKFKEDAEKMTMEKG 65 (110)
Q Consensus 35 ~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g 65 (110)
-|+.||.=+....++-..|..+.+.+...-.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~ 57 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELE 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555544433
No 104
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=34.03 E-value=2.9e+02 Score=23.35 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=23.2
Q ss_pred HHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHH
Q 037586 7 YMKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLV 44 (110)
Q Consensus 7 ~mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~ 44 (110)
|.+++.+.+.++.-+-.+...+-....--|.+-|+=|+
T Consensus 228 ~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN 265 (359)
T PF10498_consen 228 HKKSIESALPETKSQLDKLQQDISKTLEKIESREKYIN 265 (359)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566666666777766666666766665443
No 105
>PRK10698 phage shock protein PspA; Provisional
Probab=33.95 E-value=2.2e+02 Score=22.04 Aligned_cols=32 Identities=28% Similarity=0.380 Sum_probs=18.2
Q ss_pred hhhhhhhhcchhhHHHHHHHHHHHHhhhhhhh
Q 037586 75 QRKIASLESDSSTLSQTLELITQERVSISSKL 106 (110)
Q Consensus 75 QrkiasLe~d~~tL~qtLEll~qe~~s~s~kl 106 (110)
+.+++.|+.......++++-|......+-.|+
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki 129 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELENKL 129 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666655555555544
No 106
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=33.84 E-value=1.7e+02 Score=20.50 Aligned_cols=16 Identities=31% Similarity=0.864 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHhhh
Q 037586 2 EEYLQYMKTLRSQMND 17 (110)
Q Consensus 2 EeYL~~mktLRs~MnD 17 (110)
.+|+.++.++|..++.
T Consensus 96 ~~y~~~~~s~k~~l~~ 111 (218)
T cd07596 96 KEYLRYCQAVKETLDD 111 (218)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4788888888877766
No 107
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=33.75 E-value=2.1e+02 Score=21.75 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=15.2
Q ss_pred HHHHHHhhHhhHHHhhhHhhhh
Q 037586 32 QISTIQSLENDLVSAKTETKKF 53 (110)
Q Consensus 32 Q~t~I~a~e~Dl~~v~aetkr~ 53 (110)
=....++.++||...++..-++
T Consensus 121 a~~~~q~a~~~l~kkr~~~~Kl 142 (224)
T cd07623 121 VWQNWQNAQQTLTKKREAKAKL 142 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888888887775555
No 108
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=33.40 E-value=5.4e+02 Score=26.26 Aligned_cols=65 Identities=22% Similarity=0.359 Sum_probs=42.8
Q ss_pred HHhhhHhhhhhHHHHHHHHHHHHHHHH-------HHHHhhhhhhhhcchhhHHHHHHHHHHHHhhhhhhhhh
Q 037586 44 VSAKTETKKFKEDAEKMTMEKGQICAQ-------ILEKQRKIASLESDSSTLSQTLELITQERVSISSKLVE 108 (110)
Q Consensus 44 ~~v~aetkr~~ee~e~~~ka~g~i~~~-------ilekQrkiasLe~d~~tL~qtLEll~qe~~s~s~kl~e 108 (110)
-+.++..+.+.+..+.+.......-+. |.--|.+++.||.++-.+..-++-|+.+..++-.|.++
T Consensus 903 q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E 974 (1293)
T KOG0996|consen 903 QAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAE 974 (1293)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 344455555555555554333333333 34457778888999999999999999988888777654
No 109
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=32.93 E-value=3.3e+02 Score=23.67 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=6.3
Q ss_pred HHhhHhhHHHhhhHhh
Q 037586 36 IQSLENDLVSAKTETK 51 (110)
Q Consensus 36 I~a~e~Dl~~v~aetk 51 (110)
++.++++|..+..+-+
T Consensus 350 ~~~lekeL~~Le~~~~ 365 (569)
T PRK04778 350 VRQLEKQLESLEKQYD 365 (569)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444333333
No 110
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=32.87 E-value=1.5e+02 Score=19.86 Aligned_cols=70 Identities=20% Similarity=0.229 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHHHHHH
Q 037586 27 VEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTLELIT 96 (110)
Q Consensus 27 vEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtLEll~ 96 (110)
..++.-...+..+++=|....+...++-..++.-.+.+-+.+..|..-+..|+.|.++..-+...|+-.+
T Consensus 39 ~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 39 KKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444466666666667777777778888888888999999999999999988888887776543
No 111
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=31.93 E-value=2.2e+02 Score=21.31 Aligned_cols=74 Identities=19% Similarity=0.289 Sum_probs=50.0
Q ss_pred HHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHH
Q 037586 12 RSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLS 89 (110)
Q Consensus 12 Rs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~ 89 (110)
++...++|...... ..|.+.|....+=|.....++++-...=.++-...+.+.+-...-+.+|..|--+-.+|.
T Consensus 22 ~~l~~~~~~a~~~~----~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR 95 (135)
T TIGR03495 22 RNARADLERANRVL----KAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLR 95 (135)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 44455555554443 345666667777777776666666666667777788888888888888888876665553
No 112
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=31.85 E-value=2e+02 Score=20.94 Aligned_cols=54 Identities=13% Similarity=0.348 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHH
Q 037586 2 EEYLQYMKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDA 57 (110)
Q Consensus 2 EeYL~~mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~ 57 (110)
..|...+..+...++++|+.. .+........-|-.+.+++...+.-.....+=.
T Consensus 121 ~~~~~~l~~l~~~l~~le~~~--~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~l 174 (292)
T PF01544_consen 121 DDYFEVLEELEDELDELEDEL--DDRPSNELLRELFDLRRELSRLRRSLSPLREVL 174 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--THTTTHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc--ccccchhhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 468888899999999999988 333333333444455666666655555444444
No 113
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=31.18 E-value=1.1e+02 Score=28.03 Aligned_cols=76 Identities=18% Similarity=0.100 Sum_probs=48.0
Q ss_pred HHHHHHHHHhhhHHHHHhhh--h---------HHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037586 6 QYMKTLRSQMNDVEDQAAKV--S---------VEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEK 74 (110)
Q Consensus 6 ~~mktLRs~MnD~Ed~AAkv--S---------vEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilek 74 (110)
.+.-+|||+|-|+|-+---. + .+-+.|-.+|.-++--++|-+-|+.--.++ +....-+.-+-|.+|
T Consensus 330 ~q~~~Lrs~~~d~EAq~r~l~s~~~~q~~~~h~~ka~~~~~~~~l~~~~ec~~~e~e~~~~~---~~r~~~~~qski~dk 406 (554)
T KOG4677|consen 330 DQYTLLRSQIIDIEAQDRHLESAGQTQIFRKHPRKASILNMPLVLTLFYECFYHETEAEGTF---SSRVNLKKQSKIPDK 406 (554)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhHHHHHHhhhHhhhhhhchHHHHHHHHHHHHHHHHhhhh---hhhccchhhccCcch
Confidence 35678999999998553211 1 122334456666777788887776544433 445556667778888
Q ss_pred hhhhhhhhcc
Q 037586 75 QRKIASLESD 84 (110)
Q Consensus 75 QrkiasLe~d 84 (110)
|-+|-+|-.+
T Consensus 407 ~~el~kl~~~ 416 (554)
T KOG4677|consen 407 QYELTKLAAR 416 (554)
T ss_pred HHHHHHHHHH
Confidence 8887766443
No 114
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=30.98 E-value=3e+02 Score=22.64 Aligned_cols=86 Identities=13% Similarity=0.162 Sum_probs=41.9
Q ss_pred HHHHHHHHhhhHHHHHhhhhH--------------HHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHH
Q 037586 7 YMKTLRSQMNDVEDQAAKVSV--------------EEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQIL 72 (110)
Q Consensus 7 ~mktLRs~MnD~Ed~AAkvSv--------------Eeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~il 72 (110)
.|+.|+.++..++.+...... -.|.=...+...+.+++..+++.+.+....+..-..- ..+-
T Consensus 276 ~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~----~~~~ 351 (498)
T TIGR03007 276 DVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLL----RTIP 351 (498)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhch
Confidence 356777777777766433210 0011112344445555555555555554444432222 2344
Q ss_pred HHhhhhhhhhcchhhHHHHHHHHH
Q 037586 73 EKQRKIASLESDSSTLSQTLELIT 96 (110)
Q Consensus 73 ekQrkiasLe~d~~tL~qtLEll~ 96 (110)
.++.++..|+.|.....+.++.+.
T Consensus 352 ~~~~el~~L~Re~~~~~~~Y~~l~ 375 (498)
T TIGR03007 352 EVEAELTQLNRDYEVNKSNYEQLL 375 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666655555554443
No 115
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=30.88 E-value=2.9e+02 Score=22.44 Aligned_cols=72 Identities=19% Similarity=0.331 Sum_probs=42.4
Q ss_pred HHhhHhhHHHhhhHhhhhhHHHHHHHHHHH--HHHHHHHHHhhhhhhhhcchhhHHHHHHHHHHHHhhhhhhhh
Q 037586 36 IQSLENDLVSAKTETKKFKEDAEKMTMEKG--QICAQILEKQRKIASLESDSSTLSQTLELITQERVSISSKLV 107 (110)
Q Consensus 36 I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g--~i~~~ilekQrkiasLe~d~~tL~qtLEll~qe~~s~s~kl~ 107 (110)
+..++.||..++..-+++.+........+- .+-..|---++++.+|+.+.+.|-.-++=|..++..+.-+++
T Consensus 61 v~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~ 134 (239)
T COG1579 61 VSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLE 134 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777776666666555433333322 233344455667777777777777666666666666655543
No 116
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=30.86 E-value=2.2e+02 Score=20.98 Aligned_cols=11 Identities=55% Similarity=0.782 Sum_probs=6.7
Q ss_pred HHHHHHHhhhH
Q 037586 8 MKTLRSQMNDV 18 (110)
Q Consensus 8 mktLRs~MnD~ 18 (110)
|+.++..+|+-
T Consensus 25 ~~~l~~~l~~~ 35 (177)
T PF07798_consen 25 MKALREVLNDS 35 (177)
T ss_pred HHHHHHHHHHH
Confidence 55666666653
No 117
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=30.79 E-value=3.4e+02 Score=23.16 Aligned_cols=93 Identities=26% Similarity=0.351 Sum_probs=55.6
Q ss_pred hHHHHH--HHHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 037586 2 EEYLQY--MKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIA 79 (110)
Q Consensus 2 EeYL~~--mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkia 79 (110)
|||+-| ||-|...=.+-|+-|-++-.||. ....+|-+.|+.++.| +-+.++.+.+..+-. |-.-+++|.
T Consensus 75 EE~isN~LlKkl~~l~keKe~L~~~~e~EEE---~ltn~L~rkl~qLr~E----K~~lE~~Le~EqE~~--V~kL~k~i~ 145 (310)
T PF09755_consen 75 EEFISNTLLKKLQQLKKEKETLALKYEQEEE---FLTNDLSRKLNQLRQE----KVELENQLEQEQEYL--VNKLQKKIE 145 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHH--HHHHHHHHH
Confidence 566654 56666655566666555555443 2334444444444433 445555555544433 334456788
Q ss_pred hhhcchhhHHHHHHHHHHHHhhhh
Q 037586 80 SLESDSSTLSQTLELITQERVSIS 103 (110)
Q Consensus 80 sLe~d~~tL~qtLEll~qe~~s~s 103 (110)
.|+.+..+...+|+-|..|-+.+-
T Consensus 146 ~Le~e~~~~q~~le~Lr~EKVdlE 169 (310)
T PF09755_consen 146 RLEKEKSAKQEELERLRREKVDLE 169 (310)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhHH
Confidence 888888888888888888777653
No 118
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=30.77 E-value=2e+02 Score=21.52 Aligned_cols=49 Identities=12% Similarity=0.373 Sum_probs=31.6
Q ss_pred HHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHH
Q 037586 9 KTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTME 63 (110)
Q Consensus 9 ktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka 63 (110)
|+.|..|-++.-+........ -..++++++.-+.+.++.+.|.+.+.+.
T Consensus 47 KsiK~~l~e~~~~~l~~~~~~------~~~~~~~i~~Y~~~~~~~~~e~~~l~~~ 95 (157)
T PF14235_consen 47 KSIKQHLAELAADLLELELAA------RAAYQKKIARYKKEKARYKSEAEELEAK 95 (157)
T ss_pred HHHHHHHHHHHHHHHhhhccc------hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777666555443222 4566777777777777777776665544
No 119
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=30.54 E-value=2.9e+02 Score=22.33 Aligned_cols=51 Identities=22% Similarity=0.295 Sum_probs=28.6
Q ss_pred hHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHHHHHHHHHhhhh
Q 037586 39 LENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTLELITQERVSIS 103 (110)
Q Consensus 39 ~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtLEll~qe~~s~s 103 (110)
++.-..+.+++.+.+.+|.+ +++.++...+.+--+|.-..|=+.+|.+-+.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~--------------~~~~~Le~~~~~~~al~Kq~e~~~~EydrLl 199 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELE--------------KKQKKLEKAQKKVDALKKQSEGLQDEYDRLL 199 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 44444455555555444443 4555666666666666666666666665554
No 120
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=30.52 E-value=2.9e+02 Score=22.20 Aligned_cols=15 Identities=27% Similarity=0.481 Sum_probs=7.1
Q ss_pred HHHHHHhhhHHHHHh
Q 037586 9 KTLRSQMNDVEDQAA 23 (110)
Q Consensus 9 ktLRs~MnD~Ed~AA 23 (110)
+.|+.++.+++....
T Consensus 9 ~pl~e~l~~~~~~l~ 23 (304)
T PF02646_consen 9 KPLKEQLEKFEKRLE 23 (304)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555544433
No 121
>PRK04654 sec-independent translocase; Provisional
Probab=30.13 E-value=3.1e+02 Score=22.43 Aligned_cols=52 Identities=15% Similarity=0.294 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHH
Q 037586 6 QYMKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAE 58 (110)
Q Consensus 6 ~~mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e 58 (110)
..++.+|++++++-++...-. +-+.-+..++.+...+..++.+.|....+.+
T Consensus 34 k~irk~R~~~~~vk~El~~El-~~~ELrk~l~~~~~~i~~~~~~lk~~~~el~ 85 (214)
T PRK04654 34 LWVRRARMQWDSVKQELEREL-EAEELKRSLQDVQASLREAEDQLRNTQQQVE 85 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888887766553321 1111222344444555555555555555544
No 122
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=29.70 E-value=2e+02 Score=20.22 Aligned_cols=59 Identities=22% Similarity=0.322 Sum_probs=33.7
Q ss_pred HHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHHHHHH
Q 037586 31 TQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTLELIT 96 (110)
Q Consensus 31 ~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtLEll~ 96 (110)
.|.+.|..++.-+..++.....|..-.+++-..=.+=+.+|...+..+ ..|-+|.+||.
T Consensus 62 ~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L-------~rl~~t~~LLR 120 (132)
T PF10392_consen 62 SQASSIEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQL-------ERLHQTSDLLR 120 (132)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 466667777777777776666666666655444333444444444444 44555555554
No 123
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=29.40 E-value=3.3e+02 Score=24.75 Aligned_cols=46 Identities=26% Similarity=0.455 Sum_probs=26.3
Q ss_pred HHHHHHHH----HHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhh
Q 037586 3 EYLQYMKT----LRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKT 48 (110)
Q Consensus 3 eYL~~mkt----LRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~a 48 (110)
.|.+++|. +.-.|..+-++.....-|...-+.-|..||..|...+.
T Consensus 15 ~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~ 64 (617)
T PF15070_consen 15 QYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKN 64 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555543 33455566666666666666666666666666655443
No 124
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=29.37 E-value=1.7e+02 Score=19.27 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=10.7
Q ss_pred HHhhHhhHHHhhhHhhhhhHHHH
Q 037586 36 IQSLENDLVSAKTETKKFKEDAE 58 (110)
Q Consensus 36 I~a~e~Dl~~v~aetkr~~ee~e 58 (110)
|+.|..|+..++++...+++|+.
T Consensus 19 vdqLs~dv~~lr~~v~~ak~EAa 41 (56)
T PF04728_consen 19 VDQLSSDVNALRADVQAAKEEAA 41 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 125
>PRK07857 hypothetical protein; Provisional
Probab=29.35 E-value=1.3e+02 Score=21.78 Aligned_cols=36 Identities=6% Similarity=0.182 Sum_probs=30.5
Q ss_pred hhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 037586 41 NDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQR 76 (110)
Q Consensus 41 ~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQr 76 (110)
.||+..|.+..+++.+.=.+...|..++.+|.+--.
T Consensus 28 ~~L~~lR~eID~ID~eIl~LL~eR~~la~eIg~~K~ 63 (106)
T PRK07857 28 AEIDELREEIDRLDAEILALVKRRTEVSQAIGKARM 63 (106)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578888999999999999999999999988876543
No 126
>TIGR01807 CM_P2 chorismate mutase domain of proteobacterial P-protein, clade 2. This model represents one of two separate clades of the chorismate mutase domain of the gamma and beta and epsilon proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain. It is also found in Aquifex aolicus.
Probab=29.23 E-value=1.2e+02 Score=19.39 Aligned_cols=32 Identities=6% Similarity=0.104 Sum_probs=21.9
Q ss_pred HHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 037586 44 VSAKTETKKFKEDAEKMTMEKGQICAQILEKQ 75 (110)
Q Consensus 44 ~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQ 75 (110)
+..|++...++.+.=.+...|..++.+|.+--
T Consensus 2 ~~lR~~ID~iD~~iv~Ll~~R~~~~~~i~~~K 33 (76)
T TIGR01807 2 EELRNKIDAIDDRILDLLSERATYAQAVGELK 33 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777777777777777776543
No 127
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=29.06 E-value=1.6e+02 Score=21.19 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=27.4
Q ss_pred HHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHH
Q 037586 30 QTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQ 66 (110)
Q Consensus 30 q~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~ 66 (110)
..|..-|..|+..+..+..|-+..-.+.|.+.+.=..
T Consensus 100 e~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~ 136 (144)
T PF11221_consen 100 EEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQE 136 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678889988888888888888888777665433
No 128
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=28.78 E-value=3.7e+02 Score=22.98 Aligned_cols=80 Identities=19% Similarity=0.273 Sum_probs=51.1
Q ss_pred HHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHH
Q 037586 10 TLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLS 89 (110)
Q Consensus 10 tLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~ 89 (110)
.|+.-|-.+|+--+++.-=+-+|+..|. .-|+..|-+-||+.=+-+-=.+.-..+.++-.|-|++.+.|+.+--.|-
T Consensus 165 eLqkr~~~v~~l~~q~~k~~~~qv~~in---~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~~L~~L~ 241 (289)
T COG4985 165 ELQKRLLEVETLRDQVDKMVEQQVRVIN---SQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQTELDALR 241 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555566666665555554555666664 4566677777766544444455666788888888999888877655554
Q ss_pred HHH
Q 037586 90 QTL 92 (110)
Q Consensus 90 qtL 92 (110)
+-+
T Consensus 242 ~e~ 244 (289)
T COG4985 242 AEL 244 (289)
T ss_pred hhh
Confidence 433
No 129
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=28.71 E-value=5.4e+02 Score=25.87 Aligned_cols=91 Identities=21% Similarity=0.296 Sum_probs=61.9
Q ss_pred HHHHHHHHhhhHHHHHhhhhHHHHHHH-------HHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 037586 7 YMKTLRSQMNDVEDQAAKVSVEEQTQI-------STIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIA 79 (110)
Q Consensus 7 ~mktLRs~MnD~Ed~AAkvSvEeq~Q~-------t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkia 79 (110)
..+.+-.-||+.|....++-.+...-+ .-|+..+.+|+. +.+.=++++++..+- ..+-+-+..|.
T Consensus 242 ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~e-rp~li~~ke~~~~~k-------~rl~~~~k~i~ 313 (1141)
T KOG0018|consen 242 EIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAE-RPELIKVKENASHLK-------KRLEEIEKDIE 313 (1141)
T ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHhhcchhhccch-------hHHHHhhhhHH
Confidence 345566678888877766665554333 344445555555 444444555544332 34667788999
Q ss_pred hhhcchhhHHHHHHHHHHHHhhhhhh
Q 037586 80 SLESDSSTLSQTLELITQERVSISSK 105 (110)
Q Consensus 80 sLe~d~~tL~qtLEll~qe~~s~s~k 105 (110)
+.++|..+++++++-+..+..+++.+
T Consensus 314 ~~kk~~~~~~~~ie~~ek~l~av~~~ 339 (1141)
T KOG0018|consen 314 TAKKDYRALKETIERLEKELKAVEGA 339 (1141)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998875
No 130
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.70 E-value=3.4e+02 Score=22.54 Aligned_cols=65 Identities=20% Similarity=0.315 Sum_probs=31.3
Q ss_pred HHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHHHHHHHHHh
Q 037586 36 IQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTLELITQERV 100 (110)
Q Consensus 36 I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtLEll~qe~~ 100 (110)
|+.-++-|..+..+-+.+..+.+.|-..=+.+..++=+.|.+|..+..+.--|.+=++-+...++
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444455555555555555555555555555555554444444444443333
No 131
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=28.27 E-value=3e+02 Score=21.69 Aligned_cols=40 Identities=23% Similarity=0.317 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHHH
Q 037586 54 KEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTLE 93 (110)
Q Consensus 54 ~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtLE 93 (110)
.++-++|.......-..|..-......-+.++.-|..=|+
T Consensus 74 ~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~ 113 (246)
T PF00769_consen 74 EEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELE 113 (246)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444333333333444444443333
No 132
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=28.21 E-value=2e+02 Score=19.67 Aligned_cols=65 Identities=12% Similarity=0.315 Sum_probs=40.8
Q ss_pred HHHHhhHhhHHHhh---hHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHHHHHHHH
Q 037586 34 STIQSLENDLVSAK---TETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTLELITQE 98 (110)
Q Consensus 34 t~I~a~e~Dl~~v~---aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtLEll~qe 98 (110)
.+|+.||+.+..=. .....+.++...|..-++.+...+-....+...||.-|.-+++-|.-.-..
T Consensus 15 ~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~ 82 (89)
T PF13747_consen 15 AAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIET 82 (89)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666654321 112455666666777777777777777777777777777777766544433
No 133
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=27.84 E-value=1.4e+02 Score=19.74 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=15.8
Q ss_pred HHHHHHHHhhhHHHHHhhhhHHHHHHHH
Q 037586 7 YMKTLRSQMNDVEDQAAKVSVEEQTQIS 34 (110)
Q Consensus 7 ~mktLRs~MnD~Ed~AAkvSvEeq~Q~t 34 (110)
-++.|+..+.+++++.+.+..+.+....
T Consensus 71 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~ 98 (104)
T PF13600_consen 71 ELKELEEELEALEDELAALQDEIQALEA 98 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666655554444333
No 134
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=27.80 E-value=3.2e+02 Score=21.91 Aligned_cols=67 Identities=12% Similarity=0.260 Sum_probs=55.0
Q ss_pred hhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHHHHHHHHHhhhhh
Q 037586 38 SLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTLELITQERVSISS 104 (110)
Q Consensus 38 a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtLEll~qe~~s~s~ 104 (110)
.+|+=|+...+...+|..|.+..-.+..+|...=-..+.+..+|+.+-...--=|.-+++.+..|-.
T Consensus 116 ~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~ 182 (192)
T PF11180_consen 116 QLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888899999999999999999888888888999998888887778888777766543
No 135
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=27.72 E-value=1.9e+02 Score=19.26 Aligned_cols=62 Identities=15% Similarity=0.286 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHhhhHHHHHhhhh-----HHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHH
Q 037586 2 EEYLQYMKTLRSQMNDVEDQAAKVS-----VEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTME 63 (110)
Q Consensus 2 EeYL~~mktLRs~MnD~Ed~AAkvS-----vEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka 63 (110)
..|...+..|..-|++.|....... .+-+.+...++.+.+|+..-......+...+..|...
T Consensus 3 ~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~ 69 (213)
T cd00176 3 QQFLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEE 69 (213)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence 4688888888888888887655433 2445667778888888876666666666666666553
No 136
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=27.65 E-value=3.9e+02 Score=23.74 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=12.5
Q ss_pred HhhHHHhhhHhhhhhHHHHHHHHHH
Q 037586 40 ENDLVSAKTETKKFKEDAEKMTMEK 64 (110)
Q Consensus 40 e~Dl~~v~aetkr~~ee~e~~~ka~ 64 (110)
.+-|..++++|+.+-++++.+...+
T Consensus 65 ~~~l~~~~~~t~~ll~~~~~L~~~~ 89 (618)
T PF06419_consen 65 QDRLSAAKSETSDLLEEASELREQK 89 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555554443
No 137
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=27.59 E-value=51 Score=23.01 Aligned_cols=20 Identities=45% Similarity=0.508 Sum_probs=15.7
Q ss_pred HHHHHHHHhhHhhHHHhhhH
Q 037586 30 QTQISTIQSLENDLVSAKTE 49 (110)
Q Consensus 30 q~Q~t~I~a~e~Dl~~v~ae 49 (110)
|.+--+|.+||-.|+.||++
T Consensus 76 q~LdKtIS~LEMELAaARa~ 95 (95)
T PF13334_consen 76 QSLDKTISSLEMELAAARAE 95 (95)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 46677888888888888874
No 138
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=27.55 E-value=4.1e+02 Score=23.09 Aligned_cols=38 Identities=16% Similarity=0.145 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHHHHH
Q 037586 58 EKMTMEKGQICAQILEKQRKIASLESDSSTLSQTLELI 95 (110)
Q Consensus 58 e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtLEll 95 (110)
+.+....-.+-.+..+-+..|.+|..+-....+.|+-+
T Consensus 386 eel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~ 423 (569)
T PRK04778 386 EEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERY 423 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444444444433333333
No 139
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=27.33 E-value=1.9e+02 Score=19.25 Aligned_cols=50 Identities=22% Similarity=0.271 Sum_probs=30.9
Q ss_pred HHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 037586 31 TQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIAS 80 (110)
Q Consensus 31 ~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkias 80 (110)
+=+-||..|...++..+.+...++++.+.+-..-.+....--.-|++|.+
T Consensus 15 ~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 15 QAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888887777776666666666555555554444444555444
No 140
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=27.07 E-value=2.8e+02 Score=21.05 Aligned_cols=39 Identities=13% Similarity=0.297 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHH
Q 037586 26 SVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEK 64 (110)
Q Consensus 26 SvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~ 64 (110)
|-+-+.....+..+.++++..+.+...+.+..+.....|
T Consensus 61 s~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r 99 (188)
T PF03962_consen 61 SQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGR 99 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344455566677777777777777777666666664443
No 141
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=26.82 E-value=1.3e+02 Score=19.86 Aligned_cols=32 Identities=34% Similarity=0.444 Sum_probs=16.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 037586 51 KKFKEDAEKMTMEKGQICAQILEKQRKIASLE 82 (110)
Q Consensus 51 kr~~ee~e~~~ka~g~i~~~ilekQrkiasLe 82 (110)
|.+-..+++-....|.|.+-.-.-.-+|++||
T Consensus 20 K~l~~~aeq~L~~~~~i~~al~~Lk~EIaklE 51 (53)
T PF08898_consen 20 KALAAQAEQQLAEAGDIAAALEKLKAEIAKLE 51 (53)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHHHHHh
Confidence 44455556655556665554444444455444
No 142
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.34 E-value=3.8e+02 Score=22.28 Aligned_cols=64 Identities=16% Similarity=0.278 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHH
Q 037586 29 EQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTL 92 (110)
Q Consensus 29 eq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtL 92 (110)
=+.|...|..+.++.--+..+...+...++.+....-..-..|-+.+.+|..|+.+...+...+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666666666666666666666666666666655555443
No 143
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=26.01 E-value=2e+02 Score=19.01 Aligned_cols=39 Identities=15% Similarity=0.295 Sum_probs=20.8
Q ss_pred HHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHH
Q 037586 35 TIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILE 73 (110)
Q Consensus 35 ~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ile 73 (110)
++.-+++.++..+.+.+.+..+...+...-..+...|-+
T Consensus 88 A~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 88 AIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555444444433
No 144
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=25.98 E-value=5.9e+02 Score=24.37 Aligned_cols=99 Identities=22% Similarity=0.362 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhHHHH-------HHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHH-H
Q 037586 3 EYLQYMKTLRSQMNDVEDQAAKVSVEEQ-------TQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILE-K 74 (110)
Q Consensus 3 eYL~~mktLRs~MnD~Ed~AAkvSvEeq-------~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ile-k 74 (110)
+|.+.=..||..++.++++-+....+.+ ..-..|..+...+..+..+.++...+..++-..+-..-..+-+ +
T Consensus 597 d~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 676 (1201)
T PF12128_consen 597 DYAASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAK 676 (1201)
T ss_pred hhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666665554333222211 1233455555666666666666666666655555444433322 2
Q ss_pred hhhhhhhhcchhhHHHHHHHHHHHHhh
Q 037586 75 QRKIASLESDSSTLSQTLELITQERVS 101 (110)
Q Consensus 75 QrkiasLe~d~~tL~qtLEll~qe~~s 101 (110)
..+...++..-..+...+..+.+++..
T Consensus 677 ~~~~~~~~~~l~~l~~~l~~~~~e~~~ 703 (1201)
T PF12128_consen 677 EERKEQIEEQLNELEEELKQLKQELEE 703 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333444444444444444444433
No 145
>PF14282 FlxA: FlxA-like protein
Probab=25.50 E-value=2.3e+02 Score=19.64 Aligned_cols=46 Identities=26% Similarity=0.365 Sum_probs=18.0
Q ss_pred HHhhHhhHHHhhhHhhhhhH----HHHHHHHHHHHHHHHHHHHhhhhhhh
Q 037586 36 IQSLENDLVSAKTETKKFKE----DAEKMTMEKGQICAQILEKQRKIASL 81 (110)
Q Consensus 36 I~a~e~Dl~~v~aetkr~~e----e~e~~~ka~g~i~~~ilekQrkiasL 81 (110)
|..|.+-|..+..+.+.|.+ +.+......-.|=.+|..-|..|+.|
T Consensus 21 I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~ql 70 (106)
T PF14282_consen 21 IEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQL 70 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333 22333333333444444444444433
No 146
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=25.47 E-value=5.8e+02 Score=24.10 Aligned_cols=63 Identities=17% Similarity=0.339 Sum_probs=47.4
Q ss_pred HHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHHHHHHHH
Q 037586 36 IQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTLELITQE 98 (110)
Q Consensus 36 I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtLEll~qe 98 (110)
.+-+++.++.-++.++..|...|+....=|.--++|+..|.++-.+........+=+++++-+
T Consensus 268 r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkes 330 (775)
T PF10174_consen 268 RDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKES 330 (775)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 445567788888888888888777777777777888888888888877777767777766543
No 147
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=25.29 E-value=3.1e+02 Score=20.87 Aligned_cols=50 Identities=20% Similarity=0.151 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHHHHHHHHHhhhhhhh
Q 037586 57 AEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTLELITQERVSISSKL 106 (110)
Q Consensus 57 ~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtLEll~qe~~s~s~kl 106 (110)
.+.+-..=..+.+++...|..++..++....+....+-+.+..+.....+
T Consensus 80 ~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l 129 (240)
T PF12795_consen 80 LEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRL 129 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 34555556677788888888888888888888888888777776655544
No 148
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=24.83 E-value=76 Score=23.40 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=19.9
Q ss_pred HHHHHHHhhhhhhhhcchhhHHHHHH
Q 037586 68 CAQILEKQRKIASLESDSSTLSQTLE 93 (110)
Q Consensus 68 ~~~ilekQrkiasLe~d~~tL~qtLE 93 (110)
++.-...+|++.+++.|-.++.+.+.
T Consensus 65 FAkwaKl~Rk~~kl~~el~~~~~~~~ 90 (161)
T PF04420_consen 65 FAKWAKLNRKLDKLEEELEKLNKSLS 90 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567789999999998877776653
No 149
>PF02899 Phage_int_SAM_1: Phage integrase, N-terminal SAM-like domain; InterPro: IPR004107 Proteins containing this domain cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]. The phage integrase N-terminal SAM-like domain is almost always found with the signature that defines the phage integrase family (see IPR002104 from INTERPRO).; GO: 0003677 DNA binding, 0015074 DNA integration; PDB: 1Z1G_B 1Z19_A 1Z1B_A 2OXO_A 1P7D_B 3NRW_A 1A0P_A.
Probab=24.75 E-value=1e+02 Score=18.45 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=13.0
Q ss_pred hHHHHHHH--------HHHHHhhhHHHHH
Q 037586 2 EEYLQYMK--------TLRSQMNDVEDQA 22 (110)
Q Consensus 2 EeYL~~mk--------tLRs~MnD~Ed~A 22 (110)
++|+.|+. |+|+|.+++..=.
T Consensus 2 ~~f~~~l~~~~~ls~~T~~~Y~~~l~~f~ 30 (84)
T PF02899_consen 2 ERFLRYLEQERGLSPNTIRSYRRDLRRFI 30 (84)
T ss_dssp HHHHHHHHHTTTS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHH
Confidence 45666653 6777777766543
No 150
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=24.50 E-value=87 Score=26.74 Aligned_cols=78 Identities=14% Similarity=0.246 Sum_probs=10.5
Q ss_pred HhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHH
Q 037586 14 QMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQT 91 (110)
Q Consensus 14 ~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qt 91 (110)
.|.|++..-.-.+..=+...+.|..+..++...+...--++.+...|...-......|.--|..++.++.|..+|+-.
T Consensus 57 ~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksd 134 (326)
T PF04582_consen 57 TISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSD 134 (326)
T ss_dssp -------------------------------------------------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhh
Confidence 333333333333333333344444444444444444444555555555555555566666666666666666666543
No 151
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=24.19 E-value=3e+02 Score=20.39 Aligned_cols=16 Identities=6% Similarity=0.241 Sum_probs=5.8
Q ss_pred hHHHhhhHhhhhhHHH
Q 037586 42 DLVSAKTETKKFKEDA 57 (110)
Q Consensus 42 Dl~~v~aetkr~~ee~ 57 (110)
.+...+....+++.+.
T Consensus 71 r~~~l~~~i~~~~~~i 86 (302)
T PF10186_consen 71 RLERLRERIERLRKRI 86 (302)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 152
>PF04697 Pinin_SDK_N: pinin/SDK conserved region; InterPro: IPR006787 This conserved region is found at the N-terminal of the member proteins. It is located adjacent and N-terminal to the pinin/SKD/memA domain IPR006786 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque [, ]. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=24.15 E-value=98 Score=23.80 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=25.5
Q ss_pred HHHHhhHhhHHHhhhHhhhhhHHHHHHH
Q 037586 34 STIQSLENDLVSAKTETKKFKEDAEKMT 61 (110)
Q Consensus 34 t~I~a~e~Dl~~v~aetkr~~ee~e~~~ 61 (110)
.++++|++-|+.|+...|-+++.+-.|+
T Consensus 3 vav~~Lq~qlE~Ake~Lk~vDenIkKlt 30 (134)
T PF04697_consen 3 VAVRTLQAQLEKAKESLKNVDENIKKLT 30 (134)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHh
Confidence 4789999999999999999999998876
No 153
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=23.92 E-value=2.1e+02 Score=18.40 Aligned_cols=82 Identities=17% Similarity=0.326 Sum_probs=46.0
Q ss_pred hHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHH----------HHHHHHHHHhhhhhhhhcchh
Q 037586 17 DVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKG----------QICAQILEKQRKIASLESDSS 86 (110)
Q Consensus 17 D~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g----------~i~~~ilekQrkiasLe~d~~ 86 (110)
|+=|-..-++.|=+..-+-|+.++.. +.....++........+..| ..+.+|.+...++-.+=.+-+
T Consensus 5 ~f~d~~~~LP~el~r~l~~irelD~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~deKv 81 (105)
T PF12998_consen 5 DFLDSLENLPAELQRNLTLIRELDAK---SQDLLEELDQQIQKFIKNHGSPSLSPEKRRELLKEIQEEYERALELSDEKV 81 (105)
T ss_dssp HHHTSGGGHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTCTTS--S-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHChHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445566666777777766665 33333344444444444443 366667777777766666666
Q ss_pred hHH-HHHHHHHHHHhh
Q 037586 87 TLS-QTLELITQERVS 101 (110)
Q Consensus 87 tL~-qtLEll~qe~~s 101 (110)
.|+ ++.+++.+-+.-
T Consensus 82 ~lA~~~~d~v~~hi~r 97 (105)
T PF12998_consen 82 ALAQQAYDLVDRHIRR 97 (105)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 665 355666555443
No 154
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=23.75 E-value=2.1e+02 Score=18.49 Aligned_cols=41 Identities=7% Similarity=0.230 Sum_probs=17.2
Q ss_pred HhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 037586 40 ENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIAS 80 (110)
Q Consensus 40 e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkias 80 (110)
.+-+.....+...+..|++.+...--.+-..+-.|..++..
T Consensus 32 ~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~ 72 (90)
T PF06103_consen 32 NKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDP 72 (90)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33333333444444444444444444444444444444433
No 155
>TIGR01808 CM_M_hiGC-arch monofunctional chorismate mutase, high GC gram positive type. This model represents the monofunctional chorismate mutase from high GC gram-positive bacteria and archaea. Trusted annotations from Corynebacterium and Pyrococcus are aparrently the sole chorismate mutase enzymes in their respective genomes. This is coupled with the presence in those genomes of the enzymes of the chorismate pathways both up- and downstream of chorismate mutase.
Probab=23.71 E-value=2.1e+02 Score=18.70 Aligned_cols=33 Identities=9% Similarity=0.229 Sum_probs=23.4
Q ss_pred HHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 037586 43 LVSAKTETKKFKEDAEKMTMEKGQICAQILEKQ 75 (110)
Q Consensus 43 l~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQ 75 (110)
|+..|.+...++.+.=.+...|..++.+|.+--
T Consensus 2 l~~lR~~ID~ID~~ii~LL~~R~~~~~~i~~~K 34 (74)
T TIGR01808 2 IDTLREEIDRLDAEILALVKRRAEISQAIGKAR 34 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777778888777776543
No 156
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=22.85 E-value=2.5e+02 Score=18.90 Aligned_cols=30 Identities=13% Similarity=0.209 Sum_probs=15.2
Q ss_pred hhhhhcchhhHHHHHHHHHHHHhhhhhhhh
Q 037586 78 IASLESDSSTLSQTLELITQERVSISSKLV 107 (110)
Q Consensus 78 iasLe~d~~tL~qtLEll~qe~~s~s~kl~ 107 (110)
+..++.+...|...++-+..+...+-.+|.
T Consensus 72 ~e~le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 72 LETIELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555544443
No 157
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=22.69 E-value=4.1e+02 Score=21.39 Aligned_cols=64 Identities=17% Similarity=0.324 Sum_probs=33.0
Q ss_pred HHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhh----hcchhhHHHHHHHHHH
Q 037586 34 STIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASL----ESDSSTLSQTLELITQ 97 (110)
Q Consensus 34 t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasL----e~d~~tL~qtLEll~q 97 (110)
..|.+..++|+..+.+..++.++.+.+...+.++-++|.+.++.+..- ..|...|+..++.|+.
T Consensus 223 ~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 223 EEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEK 290 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555555555555544433211 1344566666666654
No 158
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=22.68 E-value=1.1e+02 Score=20.44 Aligned_cols=49 Identities=18% Similarity=0.313 Sum_probs=14.7
Q ss_pred HhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHHH
Q 037586 45 SAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTLE 93 (110)
Q Consensus 45 ~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtLE 93 (110)
.|..=..++..+.+.+.......-.++-+-+.++..+...-..|.++|-
T Consensus 22 eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~ 70 (131)
T PF05103_consen 22 EVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALI 70 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhh
Confidence 3333333444444444444444444444555555555555555555543
No 159
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=22.52 E-value=7.4e+02 Score=24.29 Aligned_cols=99 Identities=9% Similarity=0.151 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 037586 1 MEEYLQYMKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIAS 80 (110)
Q Consensus 1 MEeYL~~mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkias 80 (110)
|-+-+.+|..+|..+.+++..-.....=......--+ .-+.....+......+.+.+...-+..-..+-..+.++..
T Consensus 225 l~e~~~~~~~~~~~le~l~~~~~~l~~i~~~y~~y~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (1353)
T TIGR02680 225 VADALEQLDEYRDELERLEALERALRNFLQRYRRYAR---TMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEERE 301 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhcchhhHHHHHHHHHHHHhhh
Q 037586 81 LESDSSTLSQTLELITQERVSI 102 (110)
Q Consensus 81 Le~d~~tL~qtLEll~qe~~s~ 102 (110)
++.+..++.+.++-++.+...+
T Consensus 302 ~~~~~~~le~~~~~l~~~~~~l 323 (1353)
T TIGR02680 302 LDARTEALEREADALRTRLEAL 323 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
No 160
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=22.42 E-value=2.9e+02 Score=19.47 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=11.4
Q ss_pred HhhHhhHHHhhhHhhhhhHHHHHHH
Q 037586 37 QSLENDLVSAKTETKKFKEDAEKMT 61 (110)
Q Consensus 37 ~a~e~Dl~~v~aetkr~~ee~e~~~ 61 (110)
.++.+.+..+..-.|..++|...+-
T Consensus 97 ~~l~~~~~~~~~~~k~~kee~~klk 121 (151)
T PF11559_consen 97 RQLQKQLKSLEAKLKQEKEELQKLK 121 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 161
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=22.06 E-value=6.8e+02 Score=23.68 Aligned_cols=62 Identities=23% Similarity=0.311 Sum_probs=39.6
Q ss_pred hhHhhHHHhhhHhhhhhHHHH--------------HHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHHHHHHHHH
Q 037586 38 SLENDLVSAKTETKKFKEDAE--------------KMTMEKGQICAQILEKQRKIASLESDSSTLSQTLELITQER 99 (110)
Q Consensus 38 a~e~Dl~~v~aetkr~~ee~e--------------~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtLEll~qe~ 99 (110)
.||..|+-+..+.-.+..|.. .+...++..-+.|-.-+.++.++|++++.|+-=|-++.+|.
T Consensus 89 ~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kel 164 (769)
T PF05911_consen 89 ELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKEL 164 (769)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555444444444433 34456777777777778888888888888877766666653
No 162
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=22.02 E-value=41 Score=25.09 Aligned_cols=65 Identities=14% Similarity=0.266 Sum_probs=8.2
Q ss_pred HhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHHHHHHHHHhh
Q 037586 37 QSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTLELITQERVS 101 (110)
Q Consensus 37 ~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtLEll~qe~~s 101 (110)
..++.+-.+++++.+||..|-+.+--.-..-...+-+++...+.|+.+.--|.-.....+.+..+
T Consensus 18 ~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lpee~~~Lqfl~~~~r~d~~~ 82 (181)
T PF09311_consen 18 QSLEAERQKLRAQVRRLCQENDWLRGELANTQQKLQESEQEVAQLPEEVKHLQFLVSIKREDLIE 82 (181)
T ss_dssp HHHHHCCHHHHT-----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchHHHHHHHHHhccccccc
Confidence 34556677888899999999888755544444455667888888888887777666555555443
No 163
>PF13926 DUF4211: Domain of unknown function (DUF4211)
Probab=22.02 E-value=95 Score=22.23 Aligned_cols=37 Identities=14% Similarity=0.216 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHh
Q 037586 2 EEYLQYMKTLRSQMNDVEDQAAKVSVEEQTQISTIQS 38 (110)
Q Consensus 2 EeYL~~mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a 38 (110)
|-||.+|+.|++.+++..+.--..|+=.+.-..+|.+
T Consensus 66 e~fl~a~~~id~~~~~~~~~l~~ss~W~~~f~~aL~~ 102 (153)
T PF13926_consen 66 EYFLPALKKIDDELQGRKDSLLSSSAWKPDFKKALET 102 (153)
T ss_pred HHHHHHHHHHHHHHHHHHhceeeeccCCHHHHHHHHH
Confidence 5799999999999999888877777666655555544
No 164
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=21.95 E-value=5.8e+02 Score=22.83 Aligned_cols=30 Identities=10% Similarity=0.122 Sum_probs=20.6
Q ss_pred HHHHHhhhhhhhhcchhhHHHHHHHHHHHH
Q 037586 70 QILEKQRKIASLESDSSTLSQTLELITQER 99 (110)
Q Consensus 70 ~ilekQrkiasLe~d~~tL~qtLEll~qe~ 99 (110)
++-++|+++..|+.|..+..+..+.+.+-+
T Consensus 364 ~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~ 393 (726)
T PRK09841 364 AMPSTQQEVLRLSRDVEAGRAVYLQLLNRQ 393 (726)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677778888888777777776655443
No 165
>TIGR01791 CM_archaeal chorismate mutase, archaeal type. This model represents a clade of archaeal chorismate mutases. Chorismate mutase catalyzes the conversion of chorismate into prephenate which is subsequently converted into either phenylalanine or tyrosine. In Sulfolobus this gene is found as a fusion with prephenate dehydrogenase (although the non-TIGR annotation contains a typographical error indicating it as a dehydratase) which is the next enzyme in the tyrosine biosynthesis pathway. The Archaeoglobus gene contains an N-terminal prephenate dehydrogenase domain and a C-terminal prephenate dehydratase domain followed by a regulatory amino acid-binding ACT domain. The Thermoplasma volcanium gene is adjacent to prephenate dehydratase.
Probab=21.95 E-value=1.9e+02 Score=18.54 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=18.2
Q ss_pred HHhhhHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037586 44 VSAKTETKKFKEDAEKMTMEKGQICAQILEK 74 (110)
Q Consensus 44 ~~v~aetkr~~ee~e~~~ka~g~i~~~ilek 74 (110)
+..|.+...++.+.=.+...|..+|.+|.+.
T Consensus 2 ~~lR~~Id~iD~~i~~Ll~~R~~l~~~i~~~ 32 (83)
T TIGR01791 2 EELRQEIEEIDKSILDLIEKRIKIARKIGEI 32 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666666666666543
No 166
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=21.90 E-value=3.6e+02 Score=20.44 Aligned_cols=20 Identities=5% Similarity=0.370 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHhhhhhhh
Q 037586 87 TLSQTLELITQERVSISSKL 106 (110)
Q Consensus 87 tL~qtLEll~qe~~s~s~kl 106 (110)
..+.-+..|++....+.+.|
T Consensus 167 ~~~~ei~~lk~~~~ql~~~l 186 (189)
T PF10211_consen 167 KHQEEIDFLKKQNQQLKAQL 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555554443
No 167
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=21.72 E-value=2.9e+02 Score=19.84 Aligned_cols=51 Identities=27% Similarity=0.399 Sum_probs=28.0
Q ss_pred HHhhHhhHHHhhhHhhhhhHHH---------HHHHHHHHHHHHHHHHHhhhhhhhhcchh
Q 037586 36 IQSLENDLVSAKTETKKFKEDA---------EKMTMEKGQICAQILEKQRKIASLESDSS 86 (110)
Q Consensus 36 I~a~e~Dl~~v~aetkr~~ee~---------e~~~ka~g~i~~~ilekQrkiasLe~d~~ 86 (110)
|..|...+...+.+.+.+..+. +.|...-+++..+|..-+.++..|.....
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~ 140 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSK 140 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444433 45555666677777777777777766433
No 168
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=21.71 E-value=6.1e+02 Score=23.00 Aligned_cols=20 Identities=25% Similarity=0.219 Sum_probs=7.6
Q ss_pred hhhhhhhcchhhHHHHHHHH
Q 037586 76 RKIASLESDSSTLSQTLELI 95 (110)
Q Consensus 76 rkiasLe~d~~tL~qtLEll 95 (110)
.-|++|+.-+.+-++-|.-|
T Consensus 394 ~ni~kL~~~v~~s~~rl~~L 413 (594)
T PF05667_consen 394 ENIAKLQALVEASEQRLVEL 413 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444333333333333
No 169
>COG0732 HsdS Restriction endonuclease S subunits [Defense mechanisms]
Probab=21.03 E-value=2.5e+02 Score=20.75 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=23.9
Q ss_pred hhHHHHHHHH-HHHhhHhhHHHhhhHhhhhhHHHHHH
Q 037586 25 VSVEEQTQIS-TIQSLENDLVSAKTETKKFKEDAEKM 60 (110)
Q Consensus 25 vSvEeq~Q~t-~I~a~e~Dl~~v~aetkr~~ee~e~~ 60 (110)
-+-+||+++. .+++++..++..+.....+++....+
T Consensus 140 Ppl~eQ~~I~~iL~~~d~~i~~~~~~i~~l~~~~~~~ 176 (391)
T COG0732 140 PPLEEQQAIAKILSTLDDLIELLEKLIELLEAIKQKL 176 (391)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999984 56888888877665555555544433
No 170
>PF05635 23S_rRNA_IVP: 23S rRNA-intervening sequence protein; InterPro: IPR008815 This family consists of bacterial proteins encoded within an intervening sequence present within some 23S rRNA genes[]. The function of these proteins is not known, but a structural study indicates that each momonmer folds into an antiparallel four-helix bundle, while the overall protein is a homopentamer with a toroid-shaped structure containing a tapered central channel [].; PDB: 2GSC_E 2RLD_D.
Probab=20.98 E-value=1.2e+02 Score=20.31 Aligned_cols=28 Identities=14% Similarity=0.124 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 037586 55 EDAEKMTMEKGQICAQILEKQRKIASLE 82 (110)
Q Consensus 55 ee~e~~~ka~g~i~~~ilekQrkiasLe 82 (110)
.-.+||.++.+-|++.|.|-+++-..-|
T Consensus 33 ~l~~Qi~raa~SI~~NIaEg~~r~s~~d 60 (110)
T PF05635_consen 33 SLRDQIRRAATSIPANIAEGNGRRSKKD 60 (110)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTSSSHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHccCCHHH
Confidence 4578999999999999999988765444
No 171
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=20.73 E-value=4e+02 Score=20.53 Aligned_cols=64 Identities=17% Similarity=0.207 Sum_probs=29.4
Q ss_pred HHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhH
Q 037586 18 VEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTL 88 (110)
Q Consensus 18 ~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL 88 (110)
+|.+.....++.+.=...|..+|.-|-..+-+ ...+...+....++|.+-+..+.+++.+|...
T Consensus 115 le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~-------~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~ 178 (190)
T PF05266_consen 115 LEKKIEEKEAELKELESEIKELEMKILELQRQ-------AAKLKEKKEAKDKEISRLKSEAEALKEEIENA 178 (190)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444455555555555544333 22233333333355555555555555555443
No 172
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=20.68 E-value=4.5e+02 Score=21.13 Aligned_cols=16 Identities=19% Similarity=0.468 Sum_probs=8.5
Q ss_pred HHHHHHHhhhHHHHHh
Q 037586 8 MKTLRSQMNDVEDQAA 23 (110)
Q Consensus 8 mktLRs~MnD~Ed~AA 23 (110)
+..||+++.++|-+-+
T Consensus 256 i~~l~~~l~~le~~l~ 271 (444)
T TIGR03017 256 IQNLKTDIARAESKLA 271 (444)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455666666655443
No 173
>PRK09239 chorismate mutase; Provisional
Probab=20.65 E-value=2.9e+02 Score=19.31 Aligned_cols=33 Identities=9% Similarity=0.061 Sum_probs=20.2
Q ss_pred hHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037586 42 DLVSAKTETKKFKEDAEKMTMEKGQICAQILEK 74 (110)
Q Consensus 42 Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilek 74 (110)
+|+..|.+...++.+.=.+...|..++.+|.+-
T Consensus 11 ~L~~lR~~ID~ID~eIv~LLa~R~~l~~~Ia~~ 43 (104)
T PRK09239 11 ELAALRQSIDNIDAALIHMLAERFKCTQAVGVL 43 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666666666666666543
No 174
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=20.48 E-value=1.9e+02 Score=22.91 Aligned_cols=49 Identities=6% Similarity=0.180 Sum_probs=36.3
Q ss_pred HHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 037586 34 STIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLE 82 (110)
Q Consensus 34 t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe 82 (110)
.-|..||.|++..+...|++=-+.-+|..+-...|..-.---.-|..+-
T Consensus 2 ~~l~~~E~ele~l~~~ikkLiK~ck~~i~a~k~~~~a~~~F~~~L~~f~ 50 (207)
T cd07602 2 ENLHEHEAELERTNKAIKELIKECKNLISATKNLSKAQRSFAQTLQNFK 50 (207)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999998888887777654433333333333
No 175
>TIGR01805 CM_mono_grmpos monofunctional chorismate mutase, gram positive-type, clade 2. This model represents a clade of chorismate mutase proteins/domains from gram positive species. The sequence from Enterococcus is fused to the C-terminus of an aparrent acetyltransferase, and the seuence from Clostridium acetobutylicum (but not perfringens) is fused to the N-terminus of shikimate-5-dehydrogenase, another enzyme of the chorismate pathway. All the other members of this clade are mono-functional. Members of this clade from Streptococcus and Lactococcus have been found which represent the sole chorismate mutase domain in their respective genomes which also exhibit evidence of the enzymes of both the upstream and downstream branches of the chorismate pathways.
Probab=20.44 E-value=2.2e+02 Score=18.40 Aligned_cols=32 Identities=6% Similarity=0.105 Sum_probs=21.6
Q ss_pred HHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 037586 44 VSAKTETKKFKEDAEKMTMEKGQICAQILEKQ 75 (110)
Q Consensus 44 ~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQ 75 (110)
+..|.+...++.+.=.+...|..++.+|.+--
T Consensus 2 ~~lR~~Id~iD~~i~~Ll~~R~~~~~~i~~~K 33 (81)
T TIGR01805 2 ELIRKKIDEIDDKLVVLFEERMEVVKEIAAYK 33 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777777777777777777775543
No 176
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=20.36 E-value=91 Score=23.28 Aligned_cols=29 Identities=31% Similarity=0.463 Sum_probs=22.6
Q ss_pred hhhhhhcchhhHHHHHHHHHHHHhhhhhhhhh
Q 037586 77 KIASLESDSSTLSQTLELITQERVSISSKLVE 108 (110)
Q Consensus 77 kiasLe~d~~tL~qtLEll~qe~~s~s~kl~e 108 (110)
++-.|-+.|+| +-||++||+..+-+|||.
T Consensus 14 ~L~glRtqc~~---s~eltqqeIr~lE~KLvK 42 (129)
T PF13543_consen 14 QLEGLRTQCAT---SSELTQQEIRTLEGKLVK 42 (129)
T ss_pred HHHHHHHHhcc---chHHHHHHHHHHHHHHHH
Confidence 34446666776 679999999999999984
No 177
>TIGR01799 CM_T chorismate mutase domain of T-protein. This model represents the chorismate mutase domain of the gamma proteobacterial "T-protein" which consists of an N-terminal chorismate mutase domain and a C-terminal prephenate dehydrogenase domain.
Probab=20.31 E-value=2.2e+02 Score=18.54 Aligned_cols=30 Identities=10% Similarity=0.147 Sum_probs=17.0
Q ss_pred HhhhHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037586 45 SAKTETKKFKEDAEKMTMEKGQICAQILEK 74 (110)
Q Consensus 45 ~v~aetkr~~ee~e~~~ka~g~i~~~ilek 74 (110)
.+|.+...++.+.=.+...|..++.+|.+-
T Consensus 3 ~lR~~ID~ID~~il~Ll~~R~~~~~~ia~~ 32 (83)
T TIGR01799 3 DLRGEIDGVDQELLHLLAKRLELVAQVGKV 32 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555666666666665543
No 178
>PRK11519 tyrosine kinase; Provisional
Probab=20.13 E-value=6.3e+02 Score=22.57 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=20.2
Q ss_pred HHHHhhhhhhhhcchhhHHHHHHHHHHHHh
Q 037586 71 ILEKQRKIASLESDSSTLSQTLELITQERV 100 (110)
Q Consensus 71 ilekQrkiasLe~d~~tL~qtLEll~qe~~ 100 (110)
+-..|+++..|+.|..+-.+..+.+.+-..
T Consensus 365 lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~ 394 (719)
T PRK11519 365 MPKTQQEIVRLTRDVESGQQVYMQLLNKQQ 394 (719)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777888887777777766654433
No 179
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=20.07 E-value=5.8e+02 Score=22.08 Aligned_cols=88 Identities=22% Similarity=0.323 Sum_probs=64.8
Q ss_pred hhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhh--------------hHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 037586 15 MNDVEDQAAKVSVEEQTQISTIQSLENDLVSAK--------------TETKKFKEDAEKMTMEKGQICAQILEKQRKIAS 80 (110)
Q Consensus 15 MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~--------------aetkr~~ee~e~~~ka~g~i~~~ilekQrkias 80 (110)
+..+|-+--|.--|.|+----|+++|+-|...+ -|--.|.|..+.+-++|..+...+--|...+..
T Consensus 20 IqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~ 99 (307)
T PF10481_consen 20 IQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNF 99 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHH
Confidence 445666666666676665566777777765543 344567788899999999998888888888888
Q ss_pred hhcchhhHHHHHHHHHHHHhhh
Q 037586 81 LESDSSTLSQTLELITQERVSI 102 (110)
Q Consensus 81 Le~d~~tL~qtLEll~qe~~s~ 102 (110)
||---...+..+|-|.||..-+
T Consensus 100 lEgQl~s~Kkqie~Leqelkr~ 121 (307)
T PF10481_consen 100 LEGQLNSCKKQIEKLEQELKRC 121 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888776533
Done!