Query 037586
Match_columns 110
No_of_seqs 8 out of 10
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 03:18:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037586.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037586hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 95.8 0.22 7.6E-06 33.2 13.7 56 2-57 2-57 (284)
2 3oja_B Anopheles plasmodium-re 91.5 2.5 8.5E-05 33.3 10.6 31 76-106 544-574 (597)
3 3u1c_A Tropomyosin alpha-1 cha 90.4 2.8 9.6E-05 28.1 10.9 82 3-84 20-101 (101)
4 3u59_A Tropomyosin beta chain; 89.4 3.3 0.00011 27.4 10.9 81 3-83 20-100 (101)
5 2efr_A General control protein 84.1 10 0.00036 27.7 10.2 63 2-64 73-135 (155)
6 2dfs_A Myosin-5A; myosin-V, in 81.4 15 0.00052 33.2 10.9 24 73-96 1020-1043(1080)
7 3na7_A HP0958; flagellar bioge 76.3 21 0.00071 26.4 12.8 33 20-52 46-78 (256)
8 3uul_A Utrophin; spectrin repe 75.3 12 0.0004 23.0 8.4 62 2-63 5-72 (118)
9 3q8t_A Beclin-1; autophagy, AT 74.6 16 0.00055 24.3 11.5 58 39-96 37-94 (96)
10 1ic2_A Tropomyosin alpha chain 71.4 17 0.00057 23.1 7.7 61 36-96 8-68 (81)
11 3q8t_A Beclin-1; autophagy, AT 70.9 20 0.0007 23.8 8.6 71 36-106 6-83 (96)
12 3tnu_A Keratin, type I cytoske 69.5 24 0.00081 24.1 8.3 65 33-100 44-108 (131)
13 1deq_A Fibrinogen (alpha chain 68.8 11 0.00036 31.9 6.1 34 24-59 126-159 (390)
14 3tnu_B Keratin, type II cytosk 67.2 26 0.0009 23.7 8.3 65 33-100 42-106 (129)
15 3ra3_A P1C; coiled coil domain 66.9 3.3 0.00011 23.6 1.9 26 77-102 1-26 (28)
16 1iie_A Protein (HLA-DR antigen 66.6 2.3 8E-05 28.8 1.4 20 2-21 27-46 (75)
17 3uun_A Dystrophin; triple heli 65.7 20 0.00068 21.8 8.6 62 2-63 5-72 (119)
18 3qh9_A Liprin-beta-2; coiled-c 64.2 31 0.0011 23.4 7.5 52 2-56 22-76 (81)
19 3hnw_A Uncharacterized protein 61.5 39 0.0013 23.8 12.6 106 2-108 27-135 (138)
20 3nmd_A CGMP dependent protein 60.7 25 0.00085 23.3 5.6 51 6-60 16-66 (72)
21 1x8y_A Lamin A/C; structural p 58.0 35 0.0012 22.1 7.7 58 11-71 15-72 (86)
22 3a7p_A Autophagy protein 16; c 57.8 55 0.0019 24.3 8.9 71 30-107 64-134 (152)
23 3vkg_A Dynein heavy chain, cyt 57.5 1.3E+02 0.0043 31.1 12.1 37 69-105 2035-2071(3245)
24 3ghg_A Fibrinogen alpha chain; 56.9 38 0.0013 29.8 7.6 53 17-69 114-166 (562)
25 3cvf_A Homer-3, homer protein 54.1 45 0.0015 22.1 6.1 53 32-84 25-77 (79)
26 3pmr_A Amyloid-like protein 1; 53.1 68 0.0023 24.9 7.8 72 22-103 32-103 (219)
27 2dfs_A Myosin-5A; myosin-V, in 49.0 1.5E+02 0.0053 26.8 11.9 94 10-103 946-1043(1080)
28 4e61_A Protein BIM1; EB1-like 48.9 27 0.00093 24.5 4.5 34 73-106 15-48 (106)
29 1avy_A Fibritin, gpwac M; bact 48.5 16 0.00055 24.7 3.2 41 28-82 2-42 (74)
30 3ol1_A Vimentin; structural ge 48.0 62 0.0021 21.9 11.5 26 3-28 17-42 (119)
31 2no2_A HIP-I, huntingtin-inter 47.9 63 0.0021 22.0 9.7 11 36-46 31-41 (107)
32 3mov_A Lamin-B1; LMNB1, B-type 45.8 64 0.0022 21.5 8.2 60 10-72 23-82 (95)
33 2no2_A HIP-I, huntingtin-inter 44.5 71 0.0024 21.7 10.3 42 32-73 52-93 (107)
34 1ez3_A Syntaxin-1A; three heli 44.5 60 0.0021 20.8 6.8 26 1-26 7-32 (127)
35 3fb2_A Spectrin alpha chain, b 42.2 80 0.0027 21.6 8.0 22 2-23 16-37 (218)
36 3na7_A HP0958; flagellar bioge 42.2 1E+02 0.0034 22.7 12.4 48 37-84 93-140 (256)
37 3vkg_A Dynein heavy chain, cyt 42.1 2.6E+02 0.0088 28.9 11.6 24 76-99 2077-2100(3245)
38 3hnw_A Uncharacterized protein 39.8 95 0.0033 21.8 6.9 47 36-82 77-130 (138)
39 3hhm_B NISH2 P85alpha; PI3KCA, 38.2 85 0.0029 25.2 6.4 51 5-55 204-254 (373)
40 3umh_A Amyloid beta A4 protein 34.2 1.6E+02 0.0055 22.7 7.9 73 21-103 24-96 (211)
41 1s94_A S-syntaxin; three helix 33.9 1.1E+02 0.0039 21.0 6.5 27 1-27 38-64 (180)
42 3lay_A Zinc resistance-associa 33.7 87 0.003 22.9 5.4 21 58-78 120-140 (175)
43 2xv5_A Lamin-A/C; structural p 33.7 95 0.0033 19.9 6.6 48 26-73 4-51 (74)
44 3mtu_E Head morphogenesis prot 33.5 55 0.0019 22.0 3.9 28 34-61 44-71 (77)
45 2w6a_A ARF GTPase-activating p 33.3 85 0.0029 20.5 4.7 33 57-89 29-61 (63)
46 2d8d_A Aroag, phospho-2-dehydr 32.6 81 0.0028 19.7 4.5 34 42-75 4-37 (90)
47 3mq9_A Bone marrow stromal ant 31.6 1.1E+02 0.0038 23.4 5.9 36 11-46 402-441 (471)
48 1ybz_A Chorismate mutase; cons 31.3 88 0.003 20.4 4.6 36 41-76 17-52 (91)
49 2vkl_A RV0948C/MT0975; helical 30.1 82 0.0028 20.3 4.3 36 41-76 12-47 (90)
50 1zxa_A CGMP-dependent protein 29.7 77 0.0026 20.5 4.1 31 30-60 21-51 (67)
51 2z5i_A TM, general control pro 29.3 61 0.0021 19.6 3.3 37 23-61 10-46 (52)
52 3rmi_A Chorismate mutase prote 28.8 1E+02 0.0035 20.6 4.8 35 41-75 12-46 (114)
53 3cve_A Homer protein homolog 1 28.5 1.2E+02 0.0043 19.7 7.3 51 33-83 20-70 (72)
54 1ecm_A Endo-oxabicyclic transi 28.2 91 0.0031 20.1 4.3 34 41-74 5-38 (109)
55 4g1a_A AQ-C16C19 peptide; heli 27.3 25 0.00087 20.3 1.2 27 71-97 2-28 (32)
56 1jnm_A Proto-oncogene C-JUN; B 25.8 67 0.0023 19.3 3.1 29 75-103 28-56 (62)
57 1aa0_A Fibritin, gpwac E; bact 25.7 1.1E+02 0.0039 21.9 4.7 43 26-82 42-84 (113)
58 3mtu_A Tropomyosin alpha-1 cha 25.5 1.1E+02 0.0037 19.5 4.2 36 35-70 3-38 (75)
59 1gd2_E Transcription factor PA 25.3 1.4E+02 0.0047 19.1 4.7 12 8-19 31-42 (70)
60 1m1j_A Fibrinogen alpha subuni 24.9 2.1E+02 0.0073 24.8 7.0 50 6-62 111-160 (491)
61 1ic2_A Tropomyosin alpha chain 24.4 1.4E+02 0.0047 18.7 7.8 54 6-59 6-59 (81)
62 1ses_A Seryl-tRNA synthetase; 24.1 2.1E+02 0.0073 22.8 6.6 52 8-61 4-55 (421)
63 1p9i_A Cortexillin I/GCN4 hybr 24.0 74 0.0025 18.2 2.8 26 38-63 3-28 (31)
64 1cun_A Protein (alpha spectrin 23.5 1.6E+02 0.0056 19.4 8.1 60 4-63 111-175 (213)
65 2ve7_A Kinetochore protein HEC 23.3 2.5E+02 0.0086 21.6 6.6 26 37-62 181-206 (315)
66 3i00_A HIP-I, huntingtin-inter 23.3 1.3E+02 0.0046 20.8 4.6 24 34-57 15-38 (120)
67 3edu_A Beta-I spectrin, spectr 23.2 1.4E+02 0.0049 20.2 4.7 28 36-63 149-176 (218)
68 1gk4_A Vimentin; intermediate 23.1 1.5E+02 0.0051 18.8 9.5 59 11-72 13-71 (84)
69 1t2k_D Cyclic-AMP-dependent tr 23.0 1.3E+02 0.0043 17.9 4.2 27 77-103 30-56 (61)
70 3hd7_B Syntaxin-1A; membrane p 22.8 1.7E+02 0.0058 19.3 7.7 57 4-60 19-75 (109)
71 3nvo_A Zinc transport protein 22.3 2.1E+02 0.0071 20.1 7.2 58 2-62 158-215 (264)
72 3nrw_A Phage integrase/site-sp 22.3 55 0.0019 20.0 2.2 22 2-23 14-41 (117)
73 1n7s_C SNAP-25A; neuronal snar 22.1 1.6E+02 0.0055 18.7 7.8 53 5-57 22-74 (79)
74 1ykh_B RNA polymerase II holoe 22.0 1.3E+02 0.0044 20.8 4.3 38 30-67 88-125 (132)
75 3tq7_B Microtubule-associated 21.9 60 0.0021 21.6 2.5 29 78-106 3-31 (82)
76 3tnu_B Keratin, type II cytosk 21.6 1.9E+02 0.0065 19.4 9.5 31 34-64 82-112 (129)
77 3ret_A Salicylate biosynthesis 20.7 97 0.0033 19.9 3.3 34 41-74 8-41 (101)
78 3mq7_A Bone marrow stromal ant 20.7 2.4E+02 0.0084 20.3 7.6 34 36-69 73-106 (121)
79 4h8s_A DCC-interacting protein 20.3 2.9E+02 0.0099 21.0 6.5 36 33-68 43-78 (407)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=95.84 E-value=0.22 Score=33.19 Aligned_cols=56 Identities=18% Similarity=0.303 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHH
Q 037586 2 EEYLQYMKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDA 57 (110)
Q Consensus 2 EeYL~~mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~ 57 (110)
+..=..|.+|...+..+.........+-..-...+..++..+..++.+...+..+.
T Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (284)
T 1c1g_A 2 DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDEL 57 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455444444444444444433333333334444444444444443333333
No 2
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.51 E-value=2.5 Score=33.29 Aligned_cols=31 Identities=16% Similarity=0.103 Sum_probs=21.8
Q ss_pred hhhhhhhcchhhHHHHHHHHHHHHhhhhhhh
Q 037586 76 RKIASLESDSSTLSQTLELITQERVSISSKL 106 (110)
Q Consensus 76 rkiasLe~d~~tL~qtLEll~qe~~s~s~kl 106 (110)
.++..||..+..-++.++.++||...+-.++
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~ 574 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKV 574 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 4555667777777778888888877766554
No 3
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=90.41 E-value=2.8 Score=28.06 Aligned_cols=82 Identities=10% Similarity=0.102 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 037586 3 EYLQYMKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLE 82 (110)
Q Consensus 3 eYL~~mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe 82 (110)
.+++--..+...+.+.|+.+.+.-.|-..--.=|+.+|.||..+....+.+....+.--+....-=+++.--+|||.-||
T Consensus 20 ~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 20 NALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455556666667777777776666665556688899999998888877777666666666655556666788887776
Q ss_pred cc
Q 037586 83 SD 84 (110)
Q Consensus 83 ~d 84 (110)
-|
T Consensus 100 Ee 101 (101)
T 3u1c_A 100 EE 101 (101)
T ss_dssp TC
T ss_pred cC
Confidence 43
No 4
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=89.43 E-value=3.3 Score=27.42 Aligned_cols=81 Identities=15% Similarity=0.222 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 037586 3 EYLQYMKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLE 82 (110)
Q Consensus 3 eYL~~mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe 82 (110)
.+++--..+...+.+.|+.+.+.--|-..-..-|+.++.|+..+....+.+....+.--+...+-=+.+.--+|||.-||
T Consensus 20 ~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 20 NAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44555566777777888888887776666666788899999999888888887777777766666666667788887776
Q ss_pred c
Q 037586 83 S 83 (110)
Q Consensus 83 ~ 83 (110)
-
T Consensus 100 E 100 (101)
T 3u59_A 100 E 100 (101)
T ss_dssp T
T ss_pred c
Confidence 4
No 5
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=84.06 E-value=10 Score=27.72 Aligned_cols=63 Identities=19% Similarity=0.310 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHH
Q 037586 2 EEYLQYMKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEK 64 (110)
Q Consensus 2 EeYL~~mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~ 64 (110)
+.|-..+|.|.....+.|..|--..-.-++=...|+-+|.+|.+.+...+.+.++.++....=
T Consensus 73 d~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el 135 (155)
T 2efr_A 73 DKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKV 135 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888899999998888877655555566678899999999999999999999999655443
No 6
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=81.35 E-value=15 Score=33.17 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=15.8
Q ss_pred HHhhhhhhhhcchhhHHHHHHHHH
Q 037586 73 EKQRKIASLESDSSTLSQTLELIT 96 (110)
Q Consensus 73 ekQrkiasLe~d~~tL~qtLEll~ 96 (110)
+-|.++++|+++-.-|.|.++-|.
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777777665554
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=76.31 E-value=21 Score=26.39 Aligned_cols=33 Identities=9% Similarity=0.075 Sum_probs=14.9
Q ss_pred HHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhh
Q 037586 20 DQAAKVSVEEQTQISTIQSLENDLVSAKTETKK 52 (110)
Q Consensus 20 d~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr 52 (110)
+.......+-..-...|..++.|++.+++..++
T Consensus 46 ~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~ 78 (256)
T 3na7_A 46 KAILNLEEEKLALKLQVSKNEQTLQDTNAKIAS 78 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444455555555555544443
No 8
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=75.32 E-value=12 Score=23.01 Aligned_cols=62 Identities=10% Similarity=0.176 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHhhhHHHHHhhh------hHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHH
Q 037586 2 EEYLQYMKTLRSQMNDVEDQAAKV------SVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTME 63 (110)
Q Consensus 2 EeYL~~mktLRs~MnD~Ed~AAkv------SvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka 63 (110)
..|-..+..|.+-|++.|...+.- ...=+.|..-..+|++||..-+.....+.+..+.+...
T Consensus 5 ~~f~~~l~el~~WL~e~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~ 72 (118)
T 3uul_A 5 DSYQIALEEVLTWLLSAEDTFQEQDDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQ 72 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999998875531 12235566677788888888777777777777777643
No 9
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=74.62 E-value=16 Score=24.32 Aligned_cols=58 Identities=16% Similarity=0.272 Sum_probs=38.0
Q ss_pred hHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHHHHHH
Q 037586 39 LENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTLELIT 96 (110)
Q Consensus 39 ~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtLEll~ 96 (110)
++++|+...+++.+++.+-++.-+.....-.+.++.|....||+.--.--..-|+-|+
T Consensus 37 l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 37 VAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456666666777777777777777777777777777777777765554444455443
No 10
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=71.40 E-value=17 Score=23.10 Aligned_cols=61 Identities=18% Similarity=0.219 Sum_probs=42.2
Q ss_pred HHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHHHHHH
Q 037586 36 IQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTLELIT 96 (110)
Q Consensus 36 I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtLEll~ 96 (110)
|+++..|...+....-.+..+....-+..-+.-..|-.-|+||..||.|.-.....|.-.+
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~ 68 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666777788889999999888766655554443
No 11
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=70.85 E-value=20 Score=23.83 Aligned_cols=71 Identities=13% Similarity=0.239 Sum_probs=44.6
Q ss_pred HHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhc-------chhhHHHHHHHHHHHHhhhhhhh
Q 037586 36 IQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLES-------DSSTLSQTLELITQERVSISSKL 106 (110)
Q Consensus 36 I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~-------d~~tL~qtLEll~qe~~s~s~kl 106 (110)
+.++++.|..++.+-.++-.+.+.+-+.+..|-.+|...+.+...|+. +...+.-.+--+..|+.|+-+++
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~ 83 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQM 83 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667777777777777777777777777777666666666654 23444444555556666665544
No 12
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=69.54 E-value=24 Score=24.07 Aligned_cols=65 Identities=28% Similarity=0.343 Sum_probs=49.1
Q ss_pred HHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHHHHHHHHHh
Q 037586 33 ISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTLELITQERV 100 (110)
Q Consensus 33 ~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtLEll~qe~~ 100 (110)
+.+|+.|+.+|.+.+++-..|.. .+.-+.+.-+.++-.-|..|+.||.+-..+.+-++-..+|-.
T Consensus 44 rr~iq~L~~el~~l~~~~~sLE~---~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq 108 (131)
T 3tnu_A 44 RRTMQNLEIELQSQLSMKASLEN---SLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYK 108 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999888877655532 345556666788888999999999998888888777666643
No 13
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=68.77 E-value=11 Score=31.87 Aligned_cols=34 Identities=24% Similarity=0.329 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHH
Q 037586 24 KVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEK 59 (110)
Q Consensus 24 kvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~ 59 (110)
|.-|..|-+ -|+.|.++|+..+.+.+||..++|-
T Consensus 126 k~~V~~q~~--~ir~Lq~~l~~q~~kiqRLE~~Id~ 159 (390)
T 1deq_A 126 RRKVIEQVQ--RINLLQKNVRDQLVDMKRLEVDIDI 159 (390)
T ss_pred HHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666 8999999999999999999999943
No 14
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=67.15 E-value=26 Score=23.70 Aligned_cols=65 Identities=15% Similarity=0.192 Sum_probs=48.5
Q ss_pred HHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHHHHHHHHHh
Q 037586 33 ISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTLELITQERV 100 (110)
Q Consensus 33 ~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtLEll~qe~~ 100 (110)
+.+|+.|+.+|.+.+++-..|.. .+.-+.+.-+.++-.-|.+|+.||.+-..+++-++-..+|-.
T Consensus 42 rr~iq~L~~el~~l~~~~~~LE~---~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq 106 (129)
T 3tnu_B 42 NRMIQRLRAEIDNVKKQCANLQN---AIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQ 106 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45788899999888877655532 344455566778888899999999998888888777666643
No 15
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=66.90 E-value=3.3 Score=23.56 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=22.8
Q ss_pred hhhhhhcchhhHHHHHHHHHHHHhhh
Q 037586 77 KIASLESDSSTLSQTLELITQERVSI 102 (110)
Q Consensus 77 kiasLe~d~~tL~qtLEll~qe~~s~ 102 (110)
+|..||++..+|.|-+-.|+|.++|+
T Consensus 1 eidalefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 1 EIDALEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHhccHHHHHHHHHHHHHHHHh
Confidence 36788999999999999999999886
No 16
>1iie_A Protein (HLA-DR antigens associated invariant chain); major histocompatibility complex, antigen processing, oligomerization, chaperonin; NMR {Homo sapiens} SCOP: a.109.1.1
Probab=66.62 E-value=2.3 Score=28.81 Aligned_cols=20 Identities=10% Similarity=0.378 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHhhhHHHH
Q 037586 2 EEYLQYMKTLRSQMNDVEDQ 21 (110)
Q Consensus 2 EeYL~~mktLRs~MnD~Ed~ 21 (110)
+.|++|||.|++.|++.+=+
T Consensus 27 ~sfl~NLk~LK~~m~~~dWk 46 (75)
T 1iie_A 27 GSFPENLRHLKNTMETIDWK 46 (75)
T ss_dssp SCHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHhcChhhHH
Confidence 35899999999999998743
No 17
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=65.67 E-value=20 Score=21.77 Aligned_cols=62 Identities=16% Similarity=0.130 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHhhhHHHHHhhh---h---HHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHH
Q 037586 2 EEYLQYMKTLRSQMNDVEDQAAKV---S---VEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTME 63 (110)
Q Consensus 2 EeYL~~mktLRs~MnD~Ed~AAkv---S---vEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka 63 (110)
..|...+..|-+-|++.|...+.- + ..=+.|..-..+|.+||..-+.....+.+..+.|+..
T Consensus 5 ~~F~~~l~el~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~ 72 (119)
T 3uun_A 5 DRYQTALEEVLSWLLSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGT 72 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 468888999999999988765431 1 1335566677788888888888877777777777653
No 18
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=64.15 E-value=31 Score=23.45 Aligned_cols=52 Identities=17% Similarity=0.365 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHhhhHHHHHhhhhHHHHHHH---HHHHhhHhhHHHhhhHhhhhhHH
Q 037586 2 EEYLQYMKTLRSQMNDVEDQAAKVSVEEQTQI---STIQSLENDLVSAKTETKKFKED 56 (110)
Q Consensus 2 EeYL~~mktLRs~MnD~Ed~AAkvSvEeq~Q~---t~I~a~e~Dl~~v~aetkr~~ee 56 (110)
|+.++-|+.||--++++|.+=-.- |.+=. .-|..|-.-|+.-.++.+++.++
T Consensus 22 E~L~qEi~~Lr~kv~elEnErlQy---EkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 22 EELLQELRHLKIKVEELENERNQY---EWKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 688999999999999999863211 11111 22445555555556666665543
No 19
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=61.50 E-value=39 Score=23.76 Aligned_cols=106 Identities=19% Similarity=0.280 Sum_probs=76.0
Q ss_pred hHHHHHHH-HHHHHhhhHH--HHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 037586 2 EEYLQYMK-TLRSQMNDVE--DQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKI 78 (110)
Q Consensus 2 EeYL~~mk-tLRs~MnD~E--d~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrki 78 (110)
|+||...- -|=..|+++- +.....|.+...=.+++.. =.|+-..+.+...+..+.+.+-+.--.+=-++...|.++
T Consensus 27 ee~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNi-adEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~ 105 (138)
T 3hnw_A 27 EEYLQRVASYINNKITEFNKEESYRRMSAELRTDMMYLNI-ADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKA 105 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34554432 2445666776 4467777776655555543 357778888888888888887777777777888888888
Q ss_pred hhhhcchhhHHHHHHHHHHHHhhhhhhhhh
Q 037586 79 ASLESDSSTLSQTLELITQERVSISSKLVE 108 (110)
Q Consensus 79 asLe~d~~tL~qtLEll~qe~~s~s~kl~e 108 (110)
..+..+-..|..-+..|+.+.+.+.+.|-+
T Consensus 106 e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 106 ESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888888888888888888777654
No 20
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=60.68 E-value=25 Score=23.27 Aligned_cols=51 Identities=18% Similarity=0.175 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHH
Q 037586 6 QYMKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKM 60 (110)
Q Consensus 6 ~~mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~ 60 (110)
..|-|+| +|++.--+.-.|=+.+...|+.+|+.|..-.++.+.|..+.+..
T Consensus 16 ~~mgti~----eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 16 EGRGSLR----DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp ---CHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455544 55655555566667778889999999999888888888887764
No 21
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=58.03 E-value=35 Score=22.05 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=35.4
Q ss_pred HHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHH
Q 037586 11 LRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQI 71 (110)
Q Consensus 11 LRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~i 71 (110)
|...+.|+|..- ..+-+.-...|..+|..|..++++.-+.-.|-..++-.|-.+-.+|
T Consensus 15 Le~~l~e~E~~~---~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EI 72 (86)
T 1x8y_A 15 KEAKLRDLEDSL---ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEI 72 (86)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344444444432 3344444567788888888888887777667666666655444444
No 22
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=57.82 E-value=55 Score=24.25 Aligned_cols=71 Identities=17% Similarity=0.266 Sum_probs=51.7
Q ss_pred HHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHHHHHHHHHhhhhhhhh
Q 037586 30 QTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTLELITQERVSISSKLV 107 (110)
Q Consensus 30 q~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtLEll~qe~~s~s~kl~ 107 (110)
+.+..+|..|++.+...+...+++.++.....+.---+- -++.+|-....-+.+.+.-+++|-..+--+++
T Consensus 64 ~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~-------DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM 134 (152)
T 3a7p_A 64 DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLN-------AALISGTIENNVLQQKLSDLKKEHSQLVARWL 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999999999999999888777654444 44555555555556666666776666555544
No 23
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=57.48 E-value=1.3e+02 Score=31.06 Aligned_cols=37 Identities=27% Similarity=0.356 Sum_probs=14.3
Q ss_pred HHHHHHhhhhhhhhcchhhHHHHHHHHHHHHhhhhhh
Q 037586 69 AQILEKQRKIASLESDSSTLSQTLELITQERVSISSK 105 (110)
Q Consensus 69 ~~ilekQrkiasLe~d~~tL~qtLEll~qe~~s~s~k 105 (110)
..+.+.+.+|+.|..+....-.--+-|+.+...+..|
T Consensus 2035 ~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~k 2071 (3245)
T 3vkg_A 2035 ATITALEKSIATYKEEYATLIRETEQIKTESSKVKNK 2071 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333222223344444444433
No 24
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=56.86 E-value=38 Score=29.84 Aligned_cols=53 Identities=13% Similarity=0.230 Sum_probs=41.3
Q ss_pred hHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHH
Q 037586 17 DVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICA 69 (110)
Q Consensus 17 D~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~ 69 (110)
+||.+..-.-.+=+.|++.|++|.+-|+..+.+.+||.-|++-.+..=--=|+
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCs 166 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCS 166 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 66666666666777888999999999999999999999998876665443444
No 25
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=54.10 E-value=45 Score=22.14 Aligned_cols=53 Identities=13% Similarity=0.185 Sum_probs=41.1
Q ss_pred HHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 037586 32 QISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESD 84 (110)
Q Consensus 32 Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d 84 (110)
=.-.|+.++.+|+..+.+-.+++.|..+++..=+----.+.+-...||+|=.|
T Consensus 25 Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL~~~ 77 (79)
T 3cvf_A 25 LEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARLAEA 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccc
Confidence 34568899999999999999999998888766544445777888888887543
No 26
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} SCOP: a.47.4.0 PDB: 3q7l_A 3q7g_A 3qmk_A*
Probab=53.10 E-value=68 Score=24.90 Aligned_cols=72 Identities=22% Similarity=0.227 Sum_probs=54.3
Q ss_pred HhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHHHHHHHHHhh
Q 037586 22 AAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTLELITQERVS 101 (110)
Q Consensus 22 AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtLEll~qe~~s 101 (110)
.||-+- |..++.=|.-.-++.+-+..+.|.+-. ++. -.=|-+-|..+++||.+...-+|-|+-.|+.++.
T Consensus 32 ~Ak~rL-e~~hr~k~~~VmkEW~eae~q~k~lpk-adk--------k~m~~rFQ~~v~aLE~E~~~ErqqL~etH~~RV~ 101 (219)
T 3pmr_A 32 RAKMDL-EERRMRQINEVMREWAMADNQSKNLPK-ADR--------QALNEHFQSILQTLEEQVSGERQRLVETHATRVI 101 (219)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHTTTTSCH-HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccch-hHH--------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 455555 345556677778888888888877743 221 2337788999999999999999999999999987
Q ss_pred hh
Q 037586 102 IS 103 (110)
Q Consensus 102 ~s 103 (110)
.+
T Consensus 102 a~ 103 (219)
T 3pmr_A 102 AL 103 (219)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 27
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=48.99 E-value=1.5e+02 Score=26.78 Aligned_cols=94 Identities=16% Similarity=0.180 Sum_probs=36.0
Q ss_pred HHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhh----hhhhcch
Q 037586 10 TLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKI----ASLESDS 85 (110)
Q Consensus 10 tLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrki----asLe~d~ 85 (110)
.|+..++++|+...+--.+=+.+.......++++..++++.+.+.++.+.+-+.-...-.+--+-+.++ ..|+...
T Consensus 946 ~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv 1025 (1080)
T 2dfs_A 946 SLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLV 1025 (1080)
T ss_dssp -----CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433333333333334444444555555545555554444443332222222111111121 2333444
Q ss_pred hhHHHHHHHHHHHHhhhh
Q 037586 86 STLSQTLELITQERVSIS 103 (110)
Q Consensus 86 ~tL~qtLEll~qe~~s~s 103 (110)
.+|......|.|....+.
T Consensus 1026 ~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1026 SELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555555444
No 28
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=48.86 E-value=27 Score=24.50 Aligned_cols=34 Identities=26% Similarity=0.283 Sum_probs=19.4
Q ss_pred HHhhhhhhhhcchhhHHHHHHHHHHHHhhhhhhh
Q 037586 73 EKQRKIASLESDSSTLSQTLELITQERVSISSKL 106 (110)
Q Consensus 73 ekQrkiasLe~d~~tL~qtLEll~qe~~s~s~kl 106 (110)
..+.+|+.|..+..+|+.+++-+.+||+=-+.||
T Consensus 15 ~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KL 48 (106)
T 4e61_A 15 KSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKL 48 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555566666666666666666555
No 29
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=48.54 E-value=16 Score=24.67 Aligned_cols=41 Identities=27% Similarity=0.407 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 037586 28 EEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLE 82 (110)
Q Consensus 28 Eeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe 82 (110)
||--=.-++.+||-+|+.++.|..-++-. |.+-|++|.+|+
T Consensus 2 eErGl~nsVk~~eT~iaa~~~ev~t~~~~--------------l~~~e~~vqaL~ 42 (74)
T 1avy_A 2 EESGLTNKIKAIETDIASVRQEVNTAKGN--------------ISSLQGDVQALQ 42 (74)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHH
T ss_pred ccccccchhcccccchhhhheeeccccch--------------hhhhhhhhHHHH
Confidence 33334457889999999998887544332 556666666665
No 30
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=47.96 E-value=62 Score=21.91 Aligned_cols=26 Identities=35% Similarity=0.566 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhHH
Q 037586 3 EYLQYMKTLRSQMNDVEDQAAKVSVE 28 (110)
Q Consensus 3 eYL~~mktLRs~MnD~Ed~AAkvSvE 28 (110)
-|-.++..||.++.++.-+=|+.-.|
T Consensus 17 ~ye~~I~~LR~qid~~~~e~a~l~le 42 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTNDKARVEVE 42 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788899999988776555554444
No 31
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=47.89 E-value=63 Score=21.96 Aligned_cols=11 Identities=27% Similarity=0.335 Sum_probs=4.6
Q ss_pred HHhhHhhHHHh
Q 037586 36 IQSLENDLVSA 46 (110)
Q Consensus 36 I~a~e~Dl~~v 46 (110)
+..|+..+..+
T Consensus 31 k~eL~~~~~~~ 41 (107)
T 2no2_A 31 KKELEDSLERI 41 (107)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 32
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=45.79 E-value=64 Score=21.48 Aligned_cols=60 Identities=17% Similarity=0.218 Sum_probs=39.7
Q ss_pred HHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHH
Q 037586 10 TLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQIL 72 (110)
Q Consensus 10 tLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~il 72 (110)
+|-..+.|+|+.-+. +...-...|..+|..|..++++..+--.|-..++-.+-.+-.+|.
T Consensus 23 ~LE~~l~e~E~~~~~---e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIa 82 (95)
T 3mov_A 23 ACLERIQELEDLLAK---EKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEIS 82 (95)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777775443 444444567788888888888877766666666666655555544
No 33
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=44.55 E-value=71 Score=21.67 Aligned_cols=42 Identities=19% Similarity=0.349 Sum_probs=19.5
Q ss_pred HHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHH
Q 037586 32 QISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILE 73 (110)
Q Consensus 32 Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ile 73 (110)
|...|..+-..|+.-..+...+++..+......+++.+.+-+
T Consensus 52 q~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~ 93 (107)
T 2no2_A 52 QLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAE 93 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444433
No 34
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=44.54 E-value=60 Score=20.79 Aligned_cols=26 Identities=15% Similarity=0.542 Sum_probs=22.3
Q ss_pred ChHHHHHHHHHHHHhhhHHHHHhhhh
Q 037586 1 MEEYLQYMKTLRSQMNDVEDQAAKVS 26 (110)
Q Consensus 1 MEeYL~~mktLRs~MnD~Ed~AAkvS 26 (110)
|++|++....+|..|+.++...-.+.
T Consensus 7 m~~F~~~v~~I~~~i~~i~~~v~~l~ 32 (127)
T 1ez3_A 7 MDEFFEQVEEIRGFIDKIAENVEEVK 32 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999988877663
No 35
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=42.24 E-value=80 Score=21.56 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHhhhHHHHHh
Q 037586 2 EEYLQYMKTLRSQMNDVEDQAA 23 (110)
Q Consensus 2 EeYL~~mktLRs~MnD~Ed~AA 23 (110)
..|+..++.|.+-|++.+...+
T Consensus 16 ~~F~~~~~~l~~Wl~~~~~~l~ 37 (218)
T 3fb2_A 16 QRFLSDFRDLMSWINGIRGLVS 37 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3578888888888888888765
No 36
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=42.19 E-value=1e+02 Score=22.68 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=21.6
Q ss_pred HhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 037586 37 QSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESD 84 (110)
Q Consensus 37 ~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d 84 (110)
+++.+.|+.++.+...+.++.-.++......-..+-+.+.+++.++.+
T Consensus 93 ~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~ 140 (256)
T 3na7_A 93 RSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKL 140 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555444444444444444443344444444444443333
No 37
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=42.08 E-value=2.6e+02 Score=28.95 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=10.7
Q ss_pred hhhhhhhcchhhHHHHHHHHHHHH
Q 037586 76 RKIASLESDSSTLSQTLELITQER 99 (110)
Q Consensus 76 rkiasLe~d~~tL~qtLEll~qe~ 99 (110)
+=|..|..+-.--.++.+-+..+.
T Consensus 2077 ~Li~gL~~Ek~RW~~~~~~l~~~~ 2100 (3245)
T 3vkg_A 2077 ALLDNLNSERGRWEQQSENFNTQM 2100 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhccccHHHHHHHHHHHH
Confidence 334444444444444444444433
No 38
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=39.79 E-value=95 Score=21.75 Aligned_cols=47 Identities=26% Similarity=0.247 Sum_probs=22.6
Q ss_pred HHhhHhhHHHhhhHhh-------hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 037586 36 IQSLENDLVSAKTETK-------KFKEDAEKMTMEKGQICAQILEKQRKIASLE 82 (110)
Q Consensus 36 I~a~e~Dl~~v~aetk-------r~~ee~e~~~ka~g~i~~~ilekQrkiasLe 82 (110)
++.++.+++.-..|.- .++...+...+.--.+-..+-+-|++|..||
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555554444444 4444444444444444444444555555554
No 39
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=38.23 E-value=85 Score=25.17 Aligned_cols=51 Identities=12% Similarity=0.327 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhH
Q 037586 5 LQYMKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKE 55 (110)
Q Consensus 5 L~~mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~e 55 (110)
+.|-..|.|.|+.+.+.-.+..-+=..|..-+..+|+.+++.+.+.-+|.-
T Consensus 204 ~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k 254 (373)
T 3hhm_B 204 MHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRK 254 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 456678888888888888888888888888889999999888776644443
No 40
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell surface, secretory P metal binding protein; 2.00A {Homo sapiens} SCOP: a.47.4.1 PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A
Probab=34.18 E-value=1.6e+02 Score=22.69 Aligned_cols=73 Identities=26% Similarity=0.281 Sum_probs=56.1
Q ss_pred HHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHHHHHHHHHHHHh
Q 037586 21 QAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLESDSSTLSQTLELITQERV 100 (110)
Q Consensus 21 ~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~qtLEll~qe~~ 100 (110)
+.||-+.| ..++.=|.-.-++.+-+..+.|.+.. +|. - .=|-+-|..+++||.+...-+|-|+-.|+.++
T Consensus 24 ~~Ak~~Le-~~hr~k~~~VmkEW~eae~q~k~l~k-adk-----k---~~~~rFQ~~v~aLE~E~~~ErqqL~etH~qRV 93 (211)
T 3umh_A 24 QKAKERLE-AKHRERMSQVMREWEEAERQAKNLPK-ADK-----K---AVIQHFQEKVESLEQEAANERQQLVETHMARV 93 (211)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHTTSSSCH-HHH-----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcch-hHH-----H---HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 35666664 45556677788888888888888865 231 1 34667899999999999999999999999998
Q ss_pred hhh
Q 037586 101 SIS 103 (110)
Q Consensus 101 s~s 103 (110)
..+
T Consensus 94 ~a~ 96 (211)
T 3umh_A 94 EAM 96 (211)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 41
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=33.95 E-value=1.1e+02 Score=20.95 Aligned_cols=27 Identities=22% Similarity=0.544 Sum_probs=22.1
Q ss_pred ChHHHHHHHHHHHHhhhHHHHHhhhhH
Q 037586 1 MEEYLQYMKTLRSQMNDVEDQAAKVSV 27 (110)
Q Consensus 1 MEeYL~~mktLRs~MnD~Ed~AAkvSv 27 (110)
|++|++....+|..|+.+......+..
T Consensus 38 m~~F~~~v~~I~~~i~~i~~~v~~l~~ 64 (180)
T 1s94_A 38 MEEFFEQVEEIRAMIDKISDNVDAVKK 64 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999888776643
No 42
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=33.70 E-value=87 Score=22.90 Aligned_cols=21 Identities=10% Similarity=0.135 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 037586 58 EKMTMEKGQICAQILEKQRKI 78 (110)
Q Consensus 58 e~~~ka~g~i~~~ilekQrki 78 (110)
+.+...++++-..-++-+.++
T Consensus 120 ~Ei~~Lr~qL~~~R~k~~~em 140 (175)
T 3lay_A 120 KEMESLGQKLDEQRVKRDVAM 140 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 43
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=33.69 E-value=95 Score=19.95 Aligned_cols=48 Identities=10% Similarity=0.121 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHH
Q 037586 26 SVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILE 73 (110)
Q Consensus 26 SvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ile 73 (110)
..|.+.-...|..+|..|..++++..+.-.|-..++-.+-.+-.+|.-
T Consensus 4 ~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIat 51 (74)
T 2xv5_A 4 ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHA 51 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777778899999999999998887777777777776655555543
No 44
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=33.53 E-value=55 Score=21.95 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=23.6
Q ss_pred HHHHhhHhhHHHhhhHhhhhhHHHHHHH
Q 037586 34 STIQSLENDLVSAKTETKKFKEDAEKMT 61 (110)
Q Consensus 34 t~I~a~e~Dl~~v~aetkr~~ee~e~~~ 61 (110)
.+||.||.+|.+.+.+.+.+.++.++..
T Consensus 44 KTIDDLEDkL~~eKEK~k~i~eeLDqTL 71 (77)
T 3mtu_E 44 SEYNDLEEKVAHAKEENLNMHQMLDQTL 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5799999999999999998888877654
No 45
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=33.32 E-value=85 Score=20.55 Aligned_cols=33 Identities=15% Similarity=0.321 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhcchhhHH
Q 037586 57 AEKMTMEKGQICAQILEKQRKIASLESDSSTLS 89 (110)
Q Consensus 57 ~e~~~ka~g~i~~~ilekQrkiasLe~d~~tL~ 89 (110)
+.|++|.....+-++-.-|++|.+|-++-++|.
T Consensus 29 iQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 29 VQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 578999999999999999999999999888875
No 46
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=32.62 E-value=81 Score=19.69 Aligned_cols=34 Identities=15% Similarity=0.325 Sum_probs=23.2
Q ss_pred hHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 037586 42 DLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQ 75 (110)
Q Consensus 42 Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQ 75 (110)
+|+..|.+...++.+.=.+...|..++.+|.+-.
T Consensus 4 ~L~~lR~~ID~iD~~l~~Ll~~R~~~~~~i~~~K 37 (90)
T 2d8d_A 4 RIQALRKEVDRVNREILRLLSERGRLVQEIGRLQ 37 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777777777777777777777766543
No 47
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=31.61 E-value=1.1e+02 Score=23.45 Aligned_cols=36 Identities=14% Similarity=0.316 Sum_probs=17.1
Q ss_pred HHHHhhhHHHHHhhhh----HHHHHHHHHHHhhHhhHHHh
Q 037586 11 LRSQMNDVEDQAAKVS----VEEQTQISTIQSLENDLVSA 46 (110)
Q Consensus 11 LRs~MnD~Ed~AAkvS----vEeq~Q~t~I~a~e~Dl~~v 46 (110)
|+.++.++++.-.++- --.++=.|.-+.||+-..+.
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG 441 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHH
Confidence 5566666555443322 22233344445555555543
No 48
>1ybz_A Chorismate mutase; conserved hypothetical protein, hyperthermophIle, structural genomics, PSI, protein structu initiative; 1.82A {Pyrococcus furiosus} SCOP: a.130.1.1
Probab=31.29 E-value=88 Score=20.37 Aligned_cols=36 Identities=14% Similarity=0.161 Sum_probs=28.3
Q ss_pred hhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 037586 41 NDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQR 76 (110)
Q Consensus 41 ~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQr 76 (110)
.+|...|++...++.+.=.+...|..++.+|.+-..
T Consensus 17 ~~L~~lR~~ID~ID~~Ll~LL~~R~~~~~~Ig~~K~ 52 (91)
T 1ybz_A 17 TTLKLLRKEIDKIDNQIISLLKKRLEIAQAIGKIKK 52 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888888888888888888888876543
No 49
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=30.09 E-value=82 Score=20.30 Aligned_cols=36 Identities=6% Similarity=0.201 Sum_probs=30.7
Q ss_pred hhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 037586 41 NDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQR 76 (110)
Q Consensus 41 ~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQr 76 (110)
.+|+..|.+...++.+.=.+...|..++.+|.+-..
T Consensus 12 ~~L~~lR~~ID~iD~~Ll~LL~~R~~~~~~Ig~~K~ 47 (90)
T 2vkl_A 12 PEIDTLREEIDRLDAEILALVKRRAEVSKAIGKARM 47 (90)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999999999999999887554
No 50
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=29.73 E-value=77 Score=20.49 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=26.1
Q ss_pred HHHHHHHHhhHhhHHHhhhHhhhhhHHHHHH
Q 037586 30 QTQISTIQSLENDLVSAKTETKKFKEDAEKM 60 (110)
Q Consensus 30 q~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~ 60 (110)
+..-.-|+.||.+|....++...|.+..++.
T Consensus 21 ~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 21 MLKEERIKELEKRLSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556789999999999999999999887764
No 51
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=29.32 E-value=61 Score=19.59 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=28.7
Q ss_pred hhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHH
Q 037586 23 AKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMT 61 (110)
Q Consensus 23 AkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ 61 (110)
|-+||. +=...||.||.+|.+.+...+-+.++.++..
T Consensus 10 AERsV~--KLek~ID~LEdeL~~eKek~~~i~~eLD~tl 46 (52)
T 2z5i_A 10 LENEVA--RLKKLVDDLEDELYAQKLKYKAISEELDHAL 46 (52)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 445543 3456899999999999999999999888753
No 52
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=28.84 E-value=1e+02 Score=20.64 Aligned_cols=35 Identities=11% Similarity=0.099 Sum_probs=25.6
Q ss_pred hhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 037586 41 NDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQ 75 (110)
Q Consensus 41 ~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQ 75 (110)
.+|...|.+...++.+.=.+...|..++.+|.+-.
T Consensus 12 ~~L~~lR~~ID~ID~~il~LL~~R~~~~~~I~~~K 46 (114)
T 3rmi_A 12 SELAYLRQSIDNFDITLIHILAERFRCTQAIGRLK 46 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777777777777777777776643
No 53
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=28.52 E-value=1.2e+02 Score=19.69 Aligned_cols=51 Identities=14% Similarity=0.208 Sum_probs=39.5
Q ss_pred HHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 037586 33 ISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLES 83 (110)
Q Consensus 33 ~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe~ 83 (110)
.-.|+.++.+|+..+.+-.+++.+..++...=+----.+.+-...+|+|=.
T Consensus 20 e~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL~~ 70 (72)
T 3cve_A 20 EGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKLLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcc
Confidence 456889999999999999999999888776654444467777788887643
No 54
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=28.21 E-value=91 Score=20.12 Aligned_cols=34 Identities=12% Similarity=0.260 Sum_probs=24.0
Q ss_pred hhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037586 41 NDLVSAKTETKKFKEDAEKMTMEKGQICAQILEK 74 (110)
Q Consensus 41 ~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilek 74 (110)
.+|+..|.+...++.+.=.+...|..++.+|.+-
T Consensus 5 ~~L~~lR~~ID~iD~~L~~LL~~R~~~~~~v~~~ 38 (109)
T 1ecm_A 5 NPLLALREKISALDEKLLALLAERRELAVEVGKA 38 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777777777777553
No 55
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=27.25 E-value=25 Score=20.34 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=18.9
Q ss_pred HHHHhhhhhhhhcchhhHHHHHHHHHH
Q 037586 71 ILEKQRKIASLESDSSTLSQTLELITQ 97 (110)
Q Consensus 71 ilekQrkiasLe~d~~tL~qtLEll~q 97 (110)
|.--..+|+.||..|..-.|-+-.|.|
T Consensus 2 iaaleqkiaaleqkcaaceqkiaaleq 28 (32)
T 4g1a_A 2 IAALEQKIAALEQKCAACEQKIAALEQ 28 (32)
T ss_dssp CHHHHHHHHHHHHHTSSHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456899999999888877665544
No 56
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=25.76 E-value=67 Score=19.32 Aligned_cols=29 Identities=17% Similarity=0.429 Sum_probs=14.8
Q ss_pred hhhhhhhhcchhhHHHHHHHHHHHHhhhh
Q 037586 75 QRKIASLESDSSTLSQTLELITQERVSIS 103 (110)
Q Consensus 75 QrkiasLe~d~~tL~qtLEll~qe~~s~s 103 (110)
+.++..|+.+...|...+..|..|...+-
T Consensus 28 e~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 28 EEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555554443
No 57
>1aa0_A Fibritin, gpwac E; bacteriophage T4, structural protein, bacteriophag assembly, attachment protein; 2.20A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=25.70 E-value=1.1e+02 Score=21.89 Aligned_cols=43 Identities=26% Similarity=0.363 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 037586 26 SVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQILEKQRKIASLE 82 (110)
Q Consensus 26 SvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilekQrkiasLe 82 (110)
.|||--=.-++.+||.+++.+..+..-++-. |++-|++|.+|+
T Consensus 42 TVEERGl~nsVk~~et~i~~~t~~v~t~k~~--------------i~~~e~~vqalq 84 (113)
T 1aa0_A 42 TVEERGLTNSIKANETNIASVTQEVNTAKGN--------------ISSLQGDVQALQ 84 (113)
T ss_dssp SHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHH
T ss_pred eeeccccchhhhccccchhhhheeecccccc--------------hhhhhhhhHHHH
Confidence 3677777788999999999988776655543 555566666554
No 58
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=25.46 E-value=1.1e+02 Score=19.45 Aligned_cols=36 Identities=11% Similarity=0.230 Sum_probs=19.7
Q ss_pred HHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHH
Q 037586 35 TIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQ 70 (110)
Q Consensus 35 ~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ 70 (110)
++++..+=+..-+.+.-.+.+.++++-+.|.|-+..
T Consensus 3 ~m~aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~K 38 (75)
T 3mtu_A 3 SMDAIKKKMQMLKLDKENALDRAEQAEADKDFYFGK 38 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 344455555555555555555566666656555543
No 59
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=25.30 E-value=1.4e+02 Score=19.09 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=4.5
Q ss_pred HHHHHHHhhhHH
Q 037586 8 MKTLRSQMNDVE 19 (110)
Q Consensus 8 mktLRs~MnD~E 19 (110)
++.|-..+.++|
T Consensus 31 i~~LE~~v~~le 42 (70)
T 1gd2_E 31 LKALETQVVTLK 42 (70)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 60
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=24.94 E-value=2.1e+02 Score=24.79 Aligned_cols=50 Identities=22% Similarity=0.330 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHH
Q 037586 6 QYMKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTM 62 (110)
Q Consensus 6 ~~mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~k 62 (110)
+++.-||+..+++ |+-|..| ++-|+.|-+-|+..+.+.+||..+++.-+.
T Consensus 111 e~S~eLe~ri~yI-----K~kVd~q--i~~IrvLq~~l~~q~skIQRLE~dI~~q~~ 160 (491)
T 1m1j_A 111 HVSTELRRRIVTL-----KQRVATQ--VNRIKALQNSIQEQVVEMKRLEVDIDIKIR 160 (491)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444 3344444 478899999999999999999888775443
No 61
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=24.39 E-value=1.4e+02 Score=18.74 Aligned_cols=54 Identities=19% Similarity=0.342 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHH
Q 037586 6 QYMKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEK 59 (110)
Q Consensus 6 ~~mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~ 59 (110)
.-|..|+-......|.|......--.-......+|.++..++.-...+.+|.|.
T Consensus 6 kKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~ 59 (81)
T 1ic2_A 6 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDK 59 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 345555544444444443332222222223334455555555555555544443
No 62
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=24.12 E-value=2.1e+02 Score=22.82 Aligned_cols=52 Identities=12% Similarity=0.254 Sum_probs=22.5
Q ss_pred HHHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHH
Q 037586 8 MKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMT 61 (110)
Q Consensus 8 mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ 61 (110)
+|-+|.-...|....+++-..- . ...|-+++...-.+..+...+..+-..+.
T Consensus 4 ~~~~r~~~~~~~~~~~~r~~~~-~-~~~~~~~~~~~r~~~~~~~~l~~~~n~~s 55 (421)
T 1ses_A 4 LKRLRQEPEVFHRAIREKGVAL-D-LEALLALDREVQELKKRLQEVQTERNQVA 55 (421)
T ss_dssp HHHHHHCHHHHHHHHHHHTCCC-C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHhCCCc-C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556665555555555554321 0 33344444444444444433333333333
No 63
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=23.99 E-value=74 Score=18.24 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=19.4
Q ss_pred hhHhhHHHhhhHhhhhhHHHHHHHHH
Q 037586 38 SLENDLVSAKTETKKFKEDAEKMTME 63 (110)
Q Consensus 38 a~e~Dl~~v~aetkr~~ee~e~~~ka 63 (110)
.+.+=|++..+|.|+++...|.+...
T Consensus 3 qlnallasleaenkqlkakveellak 28 (31)
T 1p9i_A 3 QLNALLASLEAENKQLKAKVEELLAK 28 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556788889999998888776543
No 64
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=23.45 E-value=1.6e+02 Score=19.36 Aligned_cols=60 Identities=12% Similarity=0.179 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhhHHHHHhhhh-----HHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHH
Q 037586 4 YLQYMKTLRSQMNDVEDQAAKVS-----VEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTME 63 (110)
Q Consensus 4 YL~~mktLRs~MnD~Ed~AAkvS-----vEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka 63 (110)
|...+..+.+.|++.|...+... ..-+.+..-..+|+.||.........+....+.|...
T Consensus 111 f~~~~~e~~~Wl~~~e~~l~~~~~g~~~~~v~~ll~~h~~~~~el~~~~~~i~~l~~~~~~L~~~ 175 (213)
T 1cun_A 111 FVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKK 175 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44555555666666655443211 1123444455566666666655555555555555543
No 65
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=23.31 E-value=2.5e+02 Score=21.62 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=19.0
Q ss_pred HhhHhhHHHhhhHhhhhhHHHHHHHH
Q 037586 37 QSLENDLVSAKTETKKFKEDAEKMTM 62 (110)
Q Consensus 37 ~a~e~Dl~~v~aetkr~~ee~e~~~k 62 (110)
...+.++++..++..++.++.+.+-+
T Consensus 181 n~~~~eie~L~~~~~~L~eEi~~Le~ 206 (315)
T 2ve7_A 181 NVDAFKLESLEAKNRALNEQIARLEQ 206 (315)
T ss_dssp TCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456888888888888888877743
No 66
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=23.31 E-value=1.3e+02 Score=20.82 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=13.1
Q ss_pred HHHHhhHhhHHHhhhHhhhhhHHH
Q 037586 34 STIQSLENDLVSAKTETKKFKEDA 57 (110)
Q Consensus 34 t~I~a~e~Dl~~v~aetkr~~ee~ 57 (110)
..|+.|-.+++..+++..+++-|.
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~ 38 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTES 38 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666566655555555554443
No 67
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=23.20 E-value=1.4e+02 Score=20.25 Aligned_cols=28 Identities=14% Similarity=0.303 Sum_probs=18.5
Q ss_pred HHhhHhhHHHhhhHhhhhhHHHHHHHHH
Q 037586 36 IQSLENDLVSAKTETKKFKEDAEKMTME 63 (110)
Q Consensus 36 I~a~e~Dl~~v~aetkr~~ee~e~~~ka 63 (110)
-.+|++||+........+.+.+.+|...
T Consensus 149 h~~~e~dL~~~~~~v~~l~~~a~~L~~~ 176 (218)
T 3edu_A 149 HTAFERELHLLGVQVQQFQDVATRLQTA 176 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777777666654
No 68
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=23.09 E-value=1.5e+02 Score=18.77 Aligned_cols=59 Identities=22% Similarity=0.299 Sum_probs=37.0
Q ss_pred HHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHH
Q 037586 11 LRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQICAQIL 72 (110)
Q Consensus 11 LRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~il 72 (110)
|-..+.|+|..- +.+-..-...|..+|..|..++++.-+.-.|-..++-.|-.+=.+|.
T Consensus 13 LE~~l~e~e~~~---~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIa 71 (84)
T 1gk4_A 13 LERQMREMEENF---AVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIA 71 (84)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 344455555443 23334445678888888888888887777777777766655544443
No 69
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=23.02 E-value=1.3e+02 Score=17.91 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=11.8
Q ss_pred hhhhhhcchhhHHHHHHHHHHHHhhhh
Q 037586 77 KIASLESDSSTLSQTLELITQERVSIS 103 (110)
Q Consensus 77 kiasLe~d~~tL~qtLEll~qe~~s~s 103 (110)
+...|+.+...|...+..|..|...+.
T Consensus 30 ~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 30 KAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443
No 70
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=22.81 E-value=1.7e+02 Score=19.27 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHH
Q 037586 4 YLQYMKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKM 60 (110)
Q Consensus 4 YL~~mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~ 60 (110)
.-+.++.|-+-|.||=+-.-..+.-=+.|-..|+..|..++.+...+.+...+..+-
T Consensus 19 R~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA 75 (109)
T 3hd7_B 19 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 75 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777777777777778899999999999999988888777766543
No 71
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=22.29 E-value=2.1e+02 Score=20.11 Aligned_cols=58 Identities=10% Similarity=0.207 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHH
Q 037586 2 EEYLQYMKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDAEKMTM 62 (110)
Q Consensus 2 EeYL~~mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~k 62 (110)
..|+..+..|-..++++|++.-.- ......-|-.+.++|...+.-..-..+=...|.+
T Consensus 158 d~y~~~l~~l~~~id~lE~~l~~~---~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~ 215 (264)
T 3nvo_A 158 DHASEFIEELHDKIIDLEDNLLDQ---QIPPRGFLALLRKQLIVMRRYMAPQRDVYARLAS 215 (264)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-------CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 468999999999999999987533 2334556778888888887777777666666654
No 72
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=22.27 E-value=55 Score=19.99 Aligned_cols=22 Identities=14% Similarity=0.222 Sum_probs=15.5
Q ss_pred hHHHHHH------HHHHHHhhhHHHHHh
Q 037586 2 EEYLQYM------KTLRSQMNDVEDQAA 23 (110)
Q Consensus 2 EeYL~~m------ktLRs~MnD~Ed~AA 23 (110)
+.|+.++ .|+++|.+|+..-..
T Consensus 14 ~~fl~~l~~~~s~~Ti~~Y~~~l~~f~~ 41 (117)
T 3nrw_A 14 DRYLAHRQTDAADASIKSFRYRLKHFVE 41 (117)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 5677777 478888888776543
No 73
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=22.06 E-value=1.6e+02 Score=18.71 Aligned_cols=53 Identities=11% Similarity=0.196 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHhhHhhHHHhhhHhhhhhHHH
Q 037586 5 LQYMKTLRSQMNDVEDQAAKVSVEEQTQISTIQSLENDLVSAKTETKKFKEDA 57 (110)
Q Consensus 5 L~~mktLRs~MnD~Ed~AAkvSvEeq~Q~t~I~a~e~Dl~~v~aetkr~~ee~ 57 (110)
++..+--.+.|.+-|+-+...-++=+.|+-.|..-++.|..+.+..++...-.
T Consensus 22 ~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L 74 (79)
T 1n7s_C 22 LESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNL 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHH
Confidence 34455556677888888888888888888888888888888887777655433
No 74
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=22.04 E-value=1.3e+02 Score=20.82 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=28.1
Q ss_pred HHHHHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHH
Q 037586 30 QTQISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQI 67 (110)
Q Consensus 30 q~Q~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i 67 (110)
..|..-|+.|++.+..+..+..+.-.+.|.+.+.-..+
T Consensus 88 e~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 125 (132)
T 1ykh_B 88 EEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSM 125 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555688899988888888888888888777654433
No 75
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=21.87 E-value=60 Score=21.57 Aligned_cols=29 Identities=31% Similarity=0.274 Sum_probs=16.2
Q ss_pred hhhhhcchhhHHHHHHHHHHHHhhhhhhh
Q 037586 78 IASLESDSSTLSQTLELITQERVSISSKL 106 (110)
Q Consensus 78 iasLe~d~~tL~qtLEll~qe~~s~s~kl 106 (110)
|..|..+..+|+.+++-+.+||.=-+.||
T Consensus 3 i~~L~~ei~eLk~~ve~lEkERDFYF~KL 31 (82)
T 3tq7_B 3 ILELNQQLVDLKLTVDGLEKERDFYFSKL 31 (82)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666666666655
No 76
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=21.55 E-value=1.9e+02 Score=19.35 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=15.3
Q ss_pred HHHHhhHhhHHHhhhHhhhhhHHHHHHHHHH
Q 037586 34 STIQSLENDLVSAKTETKKFKEDAEKMTMEK 64 (110)
Q Consensus 34 t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~ 64 (110)
..|..+|..|..++++.-+.-.|-..++-.+
T Consensus 82 ~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvK 112 (129)
T 3tnu_B 82 NKLAELEEALQKAKQDMARLLREYQELMNTK 112 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554444444444443
No 77
>3ret_A Salicylate biosynthesis protein PCHB; intertwined dimer, lyase, mutase; HET: SAL; 1.79A {Pseudomonas aeruginosa} SCOP: a.130.1.1 PDB: 2h9d_A 3rem_A* 3hgx_A* 3hgw_C 2h9c_A
Probab=20.68 E-value=97 Score=19.92 Aligned_cols=34 Identities=6% Similarity=-0.000 Sum_probs=24.2
Q ss_pred hhHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037586 41 NDLVSAKTETKKFKEDAEKMTMEKGQICAQILEK 74 (110)
Q Consensus 41 ~Dl~~v~aetkr~~ee~e~~~ka~g~i~~~ilek 74 (110)
.+|+..|.+...++.+.=.+...|..++.+|.+-
T Consensus 8 ~~L~~lR~~ID~iD~~il~LL~~R~~~~~~i~~~ 41 (101)
T 3ret_A 8 TGLADIREAIDRIDLDIVQALGRRMDYVKAASRF 41 (101)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777777777776653
No 78
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=20.65 E-value=2.4e+02 Score=20.30 Aligned_cols=34 Identities=12% Similarity=0.334 Sum_probs=14.8
Q ss_pred HHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHHH
Q 037586 36 IQSLENDLVSAKTETKKFKEDAEKMTMEKGQICA 69 (110)
Q Consensus 36 I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~~ 69 (110)
++.|+..|...+.+.+.++.+.|++-+..-...+
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~ 106 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSV 106 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhh
Confidence 3344444444444444444444444444333333
No 79
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=20.32 E-value=2.9e+02 Score=20.99 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=22.2
Q ss_pred HHHHHhhHhhHHHhhhHhhhhhHHHHHHHHHHHHHH
Q 037586 33 ISTIQSLENDLVSAKTETKKFKEDAEKMTMEKGQIC 68 (110)
Q Consensus 33 ~t~I~a~e~Dl~~v~aetkr~~ee~e~~~ka~g~i~ 68 (110)
|++|..+|.++...+.-.+++-..+..+..+-...+
T Consensus 43 Ra~l~~~E~~~~~l~~~l~kl~k~~~~~~~~~~~~~ 78 (407)
T 4h8s_A 43 RSLLSVFEEDAGTLTDYTNQLLQAMQRVYGAQNEMC 78 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666666655544444
Done!