BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037588
(493 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KS8|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 2.5.
pdb|1KSC|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 5.6.
pdb|1KSD|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 6.5
Length = 433
Score = 268 bits (684), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 170/468 (36%), Positives = 234/468 (50%), Gaps = 54/468 (11%)
Query: 35 FDYKDALGKSIIFLEAQRSGRLPPRHRPAWRGDSGLEDGKQANVDLVGGYYDAGDNVKYG 94
+DYK L S++F EAQRSGRLP + WR DS L D DL GGY+DAGD VK+G
Sbjct: 3 YDYKQVLRDSLLFYEAQRSGRLPADQKVTWRKDSALNDQGDQGQDLTGGYFDAGDFVKFG 62
Query: 95 LPMAFTISTLSLSALYYHQELKSAGELQNVMDAIRWGTDYFLKTSSRKNKLYVQVGDPVQ 154
PMA+T + L+ + + SAG L + A++W TDYF+K + +N+ Y QVG
Sbjct: 63 FPMAYTATVLAWGLIDFEAGYSSAGALDDGRKAVKWATDYFIKAHTSQNEFYGQVGQGDA 122
Query: 155 DHQCWARPEEMKTPRTVLMIDSKTPGXXXXXXXXXXXXXXXXVFRGVDRPYSRRLLNKAK 214
DH W RPE+M R ID+ PG VFR VD YS LL A+
Sbjct: 123 DHAFWGRPEDMTMARPAYKIDTSRPGSDLAGETAAALAAASIVFRNVDGTYSNNLLTHAR 182
Query: 215 LLFHFANSHKGTYDGECP----FYCSYSGYNDELLWAATWLYMATRNPTYLEYIK----E 266
LF FAN+++G Y FY S + Y DEL+WAA WLY AT + TYL + E
Sbjct: 183 QLFDFANNYRGKYSDSITDARNFYAS-ADYRDELVWAAAWLYRATNDNTYLNTAESLYDE 241
Query: 267 DSISAIVAEFSWDLKYAGAQILLSEMFFESGDQALANFKNQADSYVCSVLPESPYHQVYM 326
+ +WD K +G Q+LL+++ + QA +K+ SYV ++
Sbjct: 242 FGLQNWGGGLNWDSKVSGVQVLLAKL---TNKQA---YKDTVQSYVNYLINNQQ-----K 290
Query: 327 TPGGLIH------YRDGANAQYVTGTALLFSIYADVLAKHNQKITCGDQQFGSSQLMAFA 380
TP GL++ R ANA ++ + + +S FA
Sbjct: 291 TPKGLLYIDMWGTLRHAANAAFIM-------------------LEAAELGLSASSYRQFA 331
Query: 381 KKQMDYLLGANPRGRSYMVGFGKDPPTRAHHRGASVPLENVNSGVSCPMSFVNFFLKNMP 440
+ Q+DY LG GRS++ GFG +PPTR HHR +S P + +C N F P
Sbjct: 332 QTQIDYALGDG--GRSFVCGFGSNPPTRPHHRSSSCPP----APATCDW---NTFNSPDP 382
Query: 441 NPNELTGAIVGGPDKHDNFNDERWDGPMTEPCTYVNSLAIGVLAKLAS 488
N + L+GA+VGGPD++DN+ D+R D E T N+ LA L +
Sbjct: 383 NYHVLSGALVGGPDQNDNYVDDRSDYVHNEVATDYNAGFQSALAALVA 430
>pdb|1JS4|A Chain A, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|1JS4|B Chain B, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|4TF4|A Chain A, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|4TF4|B Chain B, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|3TF4|A Chain A, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|3TF4|B Chain B, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|1TF4|A Chain A, EndoEXOCELLULASE FROM THERMOMONOSPORA
pdb|1TF4|B Chain B, EndoEXOCELLULASE FROM THERMOMONOSPORA
Length = 605
Score = 251 bits (641), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 165/470 (35%), Positives = 232/470 (49%), Gaps = 45/470 (9%)
Query: 35 FDYKDALGKSIIFLEAQRSGRLPPRHRPAWRGDSGLEDGKQANVDLVGGYYDAGDNVKYG 94
F+Y +AL KS+ F EAQRSG+LP +R +WRGDSGL DG +DL GG+YDAGD+VK+G
Sbjct: 4 FNYAEALQKSMFFYEAQRSGKLPENNRVSWRGDSGLNDGADVGLDLTGGWYDAGDHVKFG 63
Query: 95 LPMAFTISTLSLSALYYHQELKSAGELQNVMDAIRWGTDYFLKTSSRKNKLYVQVGDPVQ 154
PMAFT + L+ A+ + +G++ + D +RW DYF+K N LYVQVGD
Sbjct: 64 FPMAFTATMLAWGAIESPEGYIRSGQMPYLKDNLRWVNDYFIKAHPSPNVLYVQVGDGDA 123
Query: 155 DHQCWARPEEMKTPRTVLMIDSKTPGXXXXXXXXXXXXXXXXVFRGVDRPYSRRLLNKAK 214
DH+ W E M R +D PG VF D Y+ L+ AK
Sbjct: 124 DHKWWGPAEVMPMERPSFKVDPSCPGSDVAAETAAAMAASSIVFADDDPAYAATLVQHAK 183
Query: 215 LLFHFANSHKGTYDGECP---FYCSYSGYNDELLWAATWLYMATRNPTYL-----EYI-- 264
L+ FA++++G Y P FY S+SGY DEL+W A WLY AT + +YL EY
Sbjct: 184 QLYTFADTYRGVYSDCVPAGAFYNSWSGYQDELVWGAYWLYKATGDDSYLAKAEYEYDFL 243
Query: 265 ---KEDSISAIVAEFSWDLKYAGAQILLSEMFFESGDQALANFKNQ-ADSYVCSVLPESP 320
++ + + +WD K G +LL++ E+G Q + N+ D + V +
Sbjct: 244 STEQQTDLRSYRWTIAWDDKSYGTYVLLAK---ETGKQKYIDDANRWLDYWTVGVNGQ-- 298
Query: 321 YHQVYMTPGGLIHYRDGANAQYVTGTALLFSIYADVLAKHNQKITCGDQQFGSSQLMAFA 380
+V +PGG+ +Y TA + +YA V+ D + FA
Sbjct: 299 --RVPYSPGGMAVLDTWGALRYAANTAFVALVYAKVI----------DDPVRKQRYHDFA 346
Query: 381 KKQMDYLLGANPRGRSYMVGFGKDPPTRAHHRGASVPLENVNSGVSCPMSFVNFFLKNMP 440
+Q++Y LG NPR SY+VGFG +PP HHR A S+ +
Sbjct: 347 VRQINYALGDNPRNSSYVVGFGNNPPRNPHHRTAH-------------GSWTDSIASPAE 393
Query: 441 NPNELTGAIVGGP-DKHDNFNDERWDGPMTEPCTYVNSLAIGVLAKLASH 489
N + L GA+VGGP +D + D+R D E T N+ LA L
Sbjct: 394 NRHVLYGALVGGPGSPNDAYTDDRQDYVANEVATDYNAGFSSALAMLVEE 443
>pdb|2XFG|A Chain A, Reassembly And Co-Crystallization Of A Family 9 Processive
Endoglucanase From Separately Expressed Gh9 And Cbm3c
Modules
Length = 466
Score = 251 bits (640), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 161/469 (34%), Positives = 235/469 (50%), Gaps = 42/469 (8%)
Query: 31 ANADFDYKDALGKSIIFLEAQRSGRLPPRH-RPAWRGDSGLEDGKQANVDLVGGYYDAGD 89
A F+Y +AL K+I F E QRSG+L R WRGDSGL+DGK A +DL GG+YDAGD
Sbjct: 20 ATGAFNYGEALQKAIFFYECQRSGKLDSSTLRLNWRGDSGLDDGKDAGIDLTGGWYDAGD 79
Query: 90 NVKYGLPMAFTISTLSLSALYYHQELKSAGELQNVMDAIRWGTDYFLKTSSRKNKLYVQV 149
+VK+ LPM+++ + L + Y K +G+ ++++ I+W DYF+K K+ Y QV
Sbjct: 80 HVKFNLPMSYSAAMLGWAVYEYEDAFKQSGQYNHILNNIKWACDYFIKCHPEKDVYYYQV 139
Query: 150 GDPVQDHQCWARPEEMKTPRTVLMIDSKTPGXXXXXXXXXXXXXXXXVFRGVDRPYSRRL 209
GD DH W E M R +D +PG +F+ VD YS+
Sbjct: 140 GDGHADHAWWGPAEVMPMERPSYKVDRSSPGSTVVAETSAALAIASIIFKKVDGEYSKEC 199
Query: 210 LNKAKLLFHFANSHKGT--YDGECPFYCSYSGYNDELLWAATWLYMATRNPTYLE----- 262
L AK LF FA++ K Y FY S+SG+ DEL WAA WLY+AT + +YL+
Sbjct: 200 LKHAKELFEFADTTKSDDGYTAANGFYNSWSGFYDELSWAAVWLYLATNDSSYLDKAESY 259
Query: 263 -----YIKEDSISAIVAEFSWDLKYAGAQILLSEMFFESGDQALANFKNQADSYVCSVLP 317
Y + +I WD G +LL+ + ++G A + D +
Sbjct: 260 SDKWGYEPQTNIPKYKWAQCWDDVTYGTYLLLARIKNDNGKYKEA-IERHLDWWTTGYNG 318
Query: 318 ESPYHQVYMTPGGLIHYRDGANAQYVTGTALLFSIYADVLAKHNQKITCGDQQFGSSQLM 377
E ++ TP GL + +Y T TA L +Y+D GD++ + L
Sbjct: 319 E----RITYTPKGLAWLDQWGSLRYATTTAFLACVYSD--------WENGDKEKAKTYL- 365
Query: 378 AFAKKQMDYLLGANPRGRSYMVGFGKDPPTRAHHRGASVPLENVNSGVSCPMSFVNFFLK 437
FA+ Q DY LG+ GRS++VGFG++PP R HHR A S+ + ++
Sbjct: 366 EFARSQADYALGST--GRSFVVGFGENPPKRPHHRTAH-------------GSWADSQME 410
Query: 438 NMPNPNELTGAIVGGPDKHDNFNDERWDGPMTEPCTYVNSLAIGVLAKL 486
+ + L GA+VGGPD DN+ D+ + E N+ +G+LAK+
Sbjct: 411 PPEHRHVLYGALVGGPDSTDNYTDDISNYTCNEVACDYNAGFVGLLAKM 459
>pdb|4DOD|A Chain A, The Structure Of Cbescii Cela Gh9 Module
pdb|4DOE|A Chain A, The Liganded Structure Of Cbescii Cela Gh9 Module
Length = 475
Score = 217 bits (553), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 149/468 (31%), Positives = 225/468 (48%), Gaps = 42/468 (8%)
Query: 31 ANADFDYKDALGKSIIFLEAQRSGRLPPRHRPAWRGDSGLEDGKQANVDLVGGYYDAGDN 90
A+ F+Y +AL K+I+F E Q SG+LP R WRGDS L+DG+ +DL GG++DAGD+
Sbjct: 22 ASGSFNYGEALQKAIMFYEFQMSGKLPNWVRNNWRGDSALKDGQDNGLDLTGGWFDAGDH 81
Query: 91 VKYGLPMAFTISTLSLSALYYHQELKSAGELQNVMDAIRWGTDYFLKTSSRKNKLYVQVG 150
VK+ LPM++T + LS + Y +G+L+++++ I W DYF+K K Y QVG
Sbjct: 82 VKFNLPMSYTGTMLSWAVYEYKDAFVKSGQLEHILNQIEWVNDYFVKCHPSKYVYYYQVG 141
Query: 151 DPVQDHQCWARPEEMKTPRTVLMIDSKTPGXXXXXXXXXXXXXXXXVFRGVDRPYSRRLL 210
D +DH W E M+ R + +PG V + + + L
Sbjct: 142 DGSKDHAWWGPAEVMQMERPSFKVTQSSPGSTVVAETAASLAAASIVLKDRNPTKAATYL 201
Query: 211 NKAKLLFHFANSHKGT--YDGECPFYCSYSGYNDELLWAATWLYMATRNPTYL------- 261
AK L+ FA K Y +Y S+SG+ DEL WAA WLY+AT + TYL
Sbjct: 202 QHAKELYEFAEVTKSDAGYTAANGYYNSWSGFYDELSWAAVWLYLATNDSTYLTKAESYV 261
Query: 262 -EYIKEDSISAIVAEFS--WDLKYAGAQILLSEMFFESGDQALANFKNQADSYVCSVLPE 318
+ K + I +++ WD + GA +LL+++ D ++ D + E
Sbjct: 262 QNWPKISGSNTIDYKWAHCWDDVHNGAALLLAKI--TGKDIYKQIIESHLDYWTTGYNGE 319
Query: 319 SPYHQVYMTPGGLIHYRDGANAQYVTGTALLFSIYADVLAKHNQKITCGDQQFGSSQLMA 378
++ TP GL + +Y T TA L +Y+D + + K
Sbjct: 320 ----RIKYTPKGLAWLDQWGSLRYATTTAFLAFVYSDWVGCPSTKKEI---------YRK 366
Query: 379 FAKKQMDYLLGANPRGRSYMVGFGKDPPTRAHHRGASVPLENVNSGVSCPMSFVNFFLKN 438
F + Q+DY LG+ GRS++VGFG +PP R HHR A + S S
Sbjct: 367 FGESQIDYALGS--AGRSFVVGFGTNPPKRPHHRTAHSSWADSQSIPSY----------- 413
Query: 439 MPNPNELTGAIVGGPDKHDNFNDERWDGPMTEPCTYVNSLAIGVLAKL 486
+ + L GA+VGGP D++ D+ + E N+ +G LAK+
Sbjct: 414 --HRHTLYGALVGGPGSDDSYTDDISNYVNNEVACDYNAGFVGALAKM 459
>pdb|1GA2|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1GA2|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1G87|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1G87|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1KFG|A Chain A, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
pdb|1KFG|B Chain B, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
Length = 614
Score = 210 bits (535), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 150/478 (31%), Positives = 221/478 (46%), Gaps = 65/478 (13%)
Query: 35 FDYKDALGKSIIFLEAQRSGRLPPRHRPAWRGDSGLEDGKQANVDLVGGYYDAGDNVKYG 94
++Y +AL KSI+F E QRSG LP R WR DSG++DG VDL GG+YDAGD+VK+
Sbjct: 4 YNYGEALQKSIMFYEFQRSGDLPADKRDNWRDDSGMKDGSDVGVDLTGGWYDAGDHVKFN 63
Query: 95 LPMAFTISTLSLSALYYHQELKSAGELQNVMDAIRWGTDYFLKTSSRKNKLYVQVGDPVQ 154
LPM++T + L+ S +G+ + +MD I+W DYF+K + Y QVGD +
Sbjct: 64 LPMSYTSAMLAWSLYEDKDAYDKSGQTKYIMDGIKWANDYFIKCNPTPGVYYYQVGDGGK 123
Query: 155 DHQCWARPEEMKTPRTVLMIDSKTPGXXXXXXXXXXXXXXXXVFRGVDRPYSRRLLNKAK 214
DH W E M+ R +D+ PG VF+ D Y+ + ++ AK
Sbjct: 124 DHSWWGPAEVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYAEKCISHAK 183
Query: 215 LLFHFANSHKGTYDGECPFYCSYSGYN------------DELLWAATWLYMATRNPTYLE 262
LF A+ K S +GY D+L WAA WLY+AT + TYL+
Sbjct: 184 NLFDMADKAK-----------SDAGYTAASGYYSSSSFYDDLSWAAVWLYLATNDSTYLD 232
Query: 263 --------YIKEDSISAIVAEFS--WDLKYAGAQILLSEMFFESGDQALAN-FKNQADSY 311
+ KE I ++ WD + GA++LL+++ + Q + + D +
Sbjct: 233 KAESYVPNWGKEQQTDIIAYKWGQCWDDVHYGAELLLAKL---TNKQLYKDSIEMNLDFW 289
Query: 312 VCSVLPESPYHQVYMTPGGLIHYRDGANAQYVTGTALLFSIYADVLAKHNQKITCGDQQF 371
V +V TP GL + ++ T A L +YA+ K+
Sbjct: 290 TTGVNGT----RVSYTPKGLAWLFQWGSLRHATTQAFLAGVYAEWEGCTPSKV------- 338
Query: 372 GSSQLMAFAKKQMDYLLGANPRGRSYMVGFGKDPPTRAHHRGASVPLENVNSGVSCPMSF 431
S F K Q+DY LG+ GRS++VG+G +PP HHR A S+
Sbjct: 339 --SVYKDFLKSQIDYALGST--GRSFVVGYGVNPPQHPHHRTAH-------------GSW 381
Query: 432 VNFFLKNMPNPNELTGAIVGGPDKHDNFNDERWDGPMTEPCTYVNSLAIGVLAKLASH 489
+ + + + GA+VGGPD D + DE + E N+ G LAK+ H
Sbjct: 382 TDQMTSPTYHRHTIYGALVGGPDNADGYTDEINNYVNNEIACDYNAGFTGALAKMYKH 439
>pdb|1K72|A Chain A, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
pdb|1K72|B Chain B, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
Length = 614
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 150/478 (31%), Positives = 221/478 (46%), Gaps = 65/478 (13%)
Query: 35 FDYKDALGKSIIFLEAQRSGRLPPRHRPAWRGDSGLEDGKQANVDLVGGYYDAGDNVKYG 94
++Y +AL KSI+F E QRSG LP R WR DSG++DG VDL GG+YDAGD+VK+
Sbjct: 4 YNYGEALQKSIMFYEFQRSGDLPADKRDNWRDDSGMKDGSDVGVDLTGGWYDAGDHVKFN 63
Query: 95 LPMAFTISTLSLSALYYHQELKSAGELQNVMDAIRWGTDYFLKTSSRKNKLYVQVGDPVQ 154
LPM++T + L+ S +G+ + +MD I+W DYF+K + Y QVGD +
Sbjct: 64 LPMSYTSAMLAWSLYEDKDAYDKSGQTKYIMDGIKWANDYFIKCNPTPGVYYYQVGDGGK 123
Query: 155 DHQCWARPEEMKTPRTVLMIDSKTPGXXXXXXXXXXXXXXXXVFRGVDRPYSRRLLNKAK 214
DH W E M+ R +D+ PG VF+ D Y+ + ++ AK
Sbjct: 124 DHSWWGPAEVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYAEKCISHAK 183
Query: 215 LLFHFANSHKGTYDGECPFYCSYSGYN------------DELLWAATWLYMATRNPTYLE 262
LF A+ K S +GY D+L WAA WLY+AT + TYL+
Sbjct: 184 NLFDMADKAK-----------SDAGYTAASGYYSSSSFYDDLSWAAVWLYLATNDSTYLD 232
Query: 263 --------YIKEDSISAIVAEFS--WDLKYAGAQILLSEMFFESGDQALAN-FKNQADSY 311
+ KE I ++ WD + GA++LL+++ + Q + + D +
Sbjct: 233 KAESYVPNWGKEQQTDIIAYKWGQXWDDVHYGAELLLAKL---TNKQLYKDSIEMNLDFW 289
Query: 312 VCSVLPESPYHQVYMTPGGLIHYRDGANAQYVTGTALLFSIYADVLAKHNQKITCGDQQF 371
V +V TP GL + ++ T A L +YA+ K+
Sbjct: 290 TTGVNGT----RVSYTPKGLAWLFQWGSLRHATTQAFLAGVYAEWEGCTPSKV------- 338
Query: 372 GSSQLMAFAKKQMDYLLGANPRGRSYMVGFGKDPPTRAHHRGASVPLENVNSGVSCPMSF 431
S F K Q+DY LG+ GRS++VG+G +PP HHR A S+
Sbjct: 339 --SVYKDFLKSQIDYALGST--GRSFVVGYGVNPPQHPHHRTAH-------------GSW 381
Query: 432 VNFFLKNMPNPNELTGAIVGGPDKHDNFNDERWDGPMTEPCTYVNSLAIGVLAKLASH 489
+ + + + GA+VGGPD D + DE + E N+ G LAK+ H
Sbjct: 382 TDQMTSPTYHRHTIYGALVGGPDNADGYTDEINNYVNNEIACDYNAGFTGALAKMYKH 439
>pdb|1IA6|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticum
pdb|1IA7|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticium In Complex With Cellobiose
Length = 441
Score = 188 bits (478), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 136/460 (29%), Positives = 211/460 (45%), Gaps = 51/460 (11%)
Query: 36 DYKDALGKSIIFLEAQRSG-RLPPRHRPAWRGDSGLEDGKQANVDLVGGYYDAGDNVKYG 94
DY AL SIIF +A + G + + WRG DG VDL GGY+DAGD+VK+G
Sbjct: 5 DYSTALKDSIIFFDANKCGPQAGENNVFDWRGACHTTDGSDVGVDLTGGYHDAGDHVKFG 64
Query: 95 LPMAFTISTLSLSALYYHQELKSAGELQNVMDAIRWGTDYFLKTSSRKNKLYVQVGDPVQ 154
LP ++ + L S + + + G ++ +++ TDYFLK+ Y QVG+
Sbjct: 65 LPQGYSAAILGWSLYEFKESFDATGNTTKMLQQLKYFTDYFLKSHPNSTTFYYQVGEGNA 124
Query: 155 DHQCWARPEEMKTPR-TVLMIDSKTPGXXXXXXXXXXXXXXXXVFRGVDRPYSRRLLNKA 213
DH W PEE R ++ D +P ++ +D Y+ + LN A
Sbjct: 125 DHTYWGAPEEQTGQRPSLYKADPSSPASDILSETSAALTLMYLNYKNIDSAYATKCLNAA 184
Query: 214 KLLFHFANSHKGTYDGECPFYCSYSGYNDELLWAATWLYMATRNPTYLEYIKE-DSISAI 272
K L+ +++G +G+ FY + S + D+L WAATWLY AT + TY+ ++ ++
Sbjct: 185 KELYAMGKANQGVGNGQS-FYQATS-FGDDLAWAATWLYTATNDSTYITDAEQFITLGNT 242
Query: 273 VAE--------FSWDLKYAGAQILLSEMFFESGDQALANFKNQADSYVCSVLPESPYHQV 324
+ E WD Y A + L+++ +G Q + +Y + QV
Sbjct: 243 MNENKMQDKWTMCWDDMYVPAALRLAQI---TGKQIYKDAIEFNFNYWKT--------QV 291
Query: 325 YMTPGGLIHYRDGANAQYVTGTALLFSIYADVLAKHNQKITCGDQQFGSSQLMAFAKKQM 384
TPGGL + +Y +++ +Y +Q L+ AKKQ+
Sbjct: 292 TTTPGGLKWLSNWGVLRYAAAESMVMLVYC--------------KQNPDQSLLDLAKKQV 337
Query: 385 DYLLGANPRGRSYMVGFGKDPPTRAHHRGASVPLENVNSGVSCPMSFVNFFLKNMPNPNE 444
DY+LG NP SY++G+G + HHR A+ N + P +
Sbjct: 338 DYILGDNPANMSYIIGYGSNWCIHPHHRAAN-GYTYANGDNAKPAKHL------------ 384
Query: 445 LTGAIVGGPDKHDNFNDERWDGPMTEPCTYVNSLAIGVLA 484
LTGA+VGGPD++D F D+ TE N+ +GVLA
Sbjct: 385 LTGALVGGPDQNDKFLDDANQYQYTEVALDYNAGLVGVLA 424
>pdb|2YIK|A Chain A, Catalytic Domain Of Clostridium Thermocellum Celt
Length = 611
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 149/539 (27%), Positives = 226/539 (41%), Gaps = 80/539 (14%)
Query: 1 MAMGTFAKASMAM---IALTWPAFFQGLLFTVYANADFDYKDALGKSIIFLEAQRSGR-L 56
M FAK ++A I +T + A +++Y AL S+ F +A G +
Sbjct: 1 MRKNLFAKRAVAFLLGIVITAAGIVSFNTVSTSAAGEYNYAKALQYSMFFYDANMCGTGV 60
Query: 57 PPRHRPAWRGDSGLEDGK--------------------------QANVDLVGGYYDAGDN 90
+WRGD + D + VD+ GG++DAGD+
Sbjct: 61 DENSLLSWRGDCHVYDARLPLDSQNTNMSDGFISSNRSVLDPDGDGKVDVSGGFHDAGDH 120
Query: 91 VKYGLPMAFTISTLSLSALYYHQELKSAGELQNVMDAIRWGTDYFLKTSSRKNKLYV--- 147
VK+GLP A+ ST+ + + ++ G+ + +R+ DYF++ + R V
Sbjct: 121 VKFGLPEAYAASTVGWGYYEFKDQFRATGQAVHAEVILRYFNDYFMRCTFRDASGNVVAF 180
Query: 148 --QVGDPVQDHQCWARPEEMKTPRTVLMIDSKTPGXXXXXXXXXXXXXXXXVFRGVDRPY 205
QVGD DH W PE R I + PG F+ D Y
Sbjct: 181 CHQVGDGDIDHAFWGAPENDTMFRRGWFITKEKPGTDIISATAASLAINYMNFKDTDPQY 240
Query: 206 SRRLLNKAKLLFHFANSH-KGTYDGEC--PFYCSYSGYNDELLWAATWLYMATRNPTYLE 262
+ + L+ AK LF FA + KG GE Y S + D+ WAA WLY+AT+N YL+
Sbjct: 241 AAKSLDYAKALFDFAEKNPKGVVQGEDGPKGYYGSSKWQDDYCWAAAWLYLATQNEHYLD 300
Query: 263 --YIKEDSISAIVAEFSWDLKYAGAQILLSEM--FFESGDQAL------ANFKNQADSY- 311
+ D + W+ ++G +L+E+ ++ Q A+ KNQ +
Sbjct: 301 EAFKYYDYYAPPGWIHCWNDVWSGTACILAEINDLYDKDSQNFEDRYKRASNKNQWEQID 360
Query: 312 ----VCSVLPESPYHQVYMTPGGLIHYRDGANAQYVTGTALLFSIYADVLAKHNQKITCG 367
+ +L + + +TPGG + +A+Y T L+ +Y KH+ G
Sbjct: 361 FWKPIQDLLDKWSGGGITVTPGGYVFLNQWGSARYNTAAQLIALVY----DKHH-----G 411
Query: 368 DQQFGSSQLMAFAKKQMDYLLGANPRGRSYMVGFGKDPPTRAHHRGASVPLENVNSGVSC 427
D S+ +A+ QMDYLLG NP R Y+VG+ + HHR AS L++ N S
Sbjct: 412 DT---PSKYANWARSQMDYLLGKNPLNRCYVVGYSSNSVKYPHHRAAS-GLKDAND--SS 465
Query: 428 PMSFVNFFLKNMPNPNELTGAIVGGPDKHDNFNDERWDGPMTEPCTYVNSLAIGVLAKL 486
P +V L GA+VGGPD D D D E N+ +G A L
Sbjct: 466 PHKYV------------LYGALVGGPDASDQHVDRTNDYIYNEVAIDYNAAFVGACAGL 512
>pdb|3EZ8|A Chain A, Crystal Structure Of Endoglucanase Cel9a From The
Thermoacidophilic Alicyclobacillus Acidocaldarius
pdb|3GZK|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela
pdb|3H2W|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellobiose
pdb|3H3K|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellotetraose
pdb|3RX5|A Chain A, Structure Of Aacel9a In Complex With Cellotriose-Like
Isofagomine
pdb|3RX7|A Chain A, Structure Of Aacel9a In Complex With Cellotetraose-Like
Isofagomine
pdb|3RX8|A Chain A, Structure Of Aacel9a In Complex With Cellobiose-Like
Isofagomine
Length = 537
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 102/476 (21%), Positives = 174/476 (36%), Gaps = 58/476 (12%)
Query: 37 YKDALGKSIIFLEAQRSGRLPPRHR--PAWRGDSGLED----GKQANVDLVGGYYDAGDN 90
Y+D L + F + Q G + P P G D G + + GG++DAGD
Sbjct: 88 YRDVLEAMLRFFDYQLCGVVLPEDEAGPWAHGACHTSDAKVFGTERALACPGGWHDAGDY 147
Query: 91 VKYGLPMAFTISTLSLSALYYHQELKSAGELQNVMDAIRWGTDYFLKTSSRKNKLYVQVG 150
KY +P A ++ L L+ Y+ L +++V A L+ + + + +
Sbjct: 148 GKYTVPAAKAVADLLLAHEYFPAALAHVRPMRSVHRAPHLPPA--LEVAREEIAWLLTMQ 205
Query: 151 DPVQD---HQCWA--------RPEEMKTPRTVLMIDSKTPGXXXXXXXXXXXXXXXXVFR 199
DP H+ RPE+ P + I V+R
Sbjct: 206 DPATGGVYHKVTTPSFPPLDTRPEDDDAPLVLSPISYAA-----TATFCAAMAHAALVYR 260
Query: 200 GVDRPYSRRLLNKAKLLFHFANSHK----GTYDGECPFYCSYSGYNDELLWAATWLYMAT 255
D S + A+ + + +H+ DG + DELLWA+ L T
Sbjct: 261 PFDPALSSCCADAARRAYAWLGAHEMQPFHNPDGILTGEYGDAELRDELLWASCALLRMT 320
Query: 256 RNPTYLEYIKEDSISAIVAEFSWDLKYAGAQILLSEMFFESGDQALAN-FKNQADSYVCS 314
+ + + + + W+L +A + + + A+++ +N+ S +
Sbjct: 321 GDSAWARVCE----PLLDLDLPWELGWADVALYGVMDYLRTPRAAVSDDVRNKVKSRLLR 376
Query: 315 VLPESPYHQVYMTPGGLIHYRD----GANAQYVTGTALLFSIYADVLAKHNQKITCGDQQ 370
L ++ P G+ D G+N + A+ F + V H T
Sbjct: 377 EL-DALAAMAESHPFGIPMRDDDFIWGSN-MVLLNRAMAFLLAEGVGVLHPAAHT----- 429
Query: 371 FGSSQLMAFAKKQMDYLLGANPRGRSYMVGFGKDPPTRAHHRGASVPLENVNSGVSCPMS 430
A++ DYL GANP G+ Y+ GFG+ P HHR +V V P+
Sbjct: 430 --------VAQRAADYLFGANPLGQCYVTGFGQRPVRHPHHR------PSVADDVDHPVP 475
Query: 431 FVNFFLKNMPNPNELTGAIVGGPDKHDNFNDERWDGPMTEPCTYVNSLAIGVLAKL 486
+ N +E+ A + G + + D + E Y NS A+ V+A L
Sbjct: 476 GMVVGGPNRHLQDEIARAQLAGRPAMEAYIDHQDSYSTNEVAVYWNSPAVFVIAAL 531
>pdb|1CLC|A Chain A, Three-Dimensional Structure Of Endoglucanase D At 1.9
Angstroms Resolution
Length = 639
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 89/426 (20%), Positives = 159/426 (37%), Gaps = 57/426 (13%)
Query: 16 LTWPAFFQGLLFTVYANADFDYKDALGKSIIFLEAQRSGR--------LPPRHRPAWRGD 67
L P + + F + N Y+DA +++ + R G + H P D
Sbjct: 111 LAVPGVGKSVNFKIAMNV---YEDAFKTAMLGMYLLRCGTSVSATYNGIHYSHGPCHTND 167
Query: 68 SGLE--DGKQANVDLVGGYYDAGDNVKYGLPMAFTISTLSLSALYYHQELKSAG------ 119
+ L+ +G+ D G++DAGD KY + T+ ++ L+ ++ +L+
Sbjct: 168 AYLDYINGQHTKKDSTKGWHDAGDYNKYVVNAGITVGSMFLAWEHFKDQLEPVALEIPEK 227
Query: 120 --ELQNVMDAIRWGTDYFLKTSSRKNKLYVQVGDPVQDHQCWARPEEMKTPRTVLMIDSK 177
+ + +D +++ D+ L V ++ + PE R + S
Sbjct: 228 NNSIPDFLDELKYEIDWILTMQYPDGSGRVAHKVSTRNFGGFIMPENEHDERFFVPWSSA 287
Query: 178 TPGXXXXXXXXXXXXXXXXVFRGVDRPYSRRLLNKAKLLFHF-ANSHKGTYDGECPF--- 233
+FR D Y+ + +N AK+ + F N+ + + F
Sbjct: 288 ATADFVAMTAMAAR-----IFRPYDPQYAEKCINAAKVSYEFLKNNPANVFANQSGFSTG 342
Query: 234 -YCSYSGYNDELLWAATWLYMATRNPTYLEYIKEDSIS---AIVAEFSWD--LKYAGAQI 287
Y + S +D L WAA ++ + YL + + I A+F WD
Sbjct: 343 EYATVSDADDRL-WAAAEMWETLGDEEYLRDFENRAAQFSKKIEADFDWDNVANLGMFTY 401
Query: 288 LLSEMFFESGDQALA-NFKNQADSYVCSVLPESPYHQVYMTPGGLIHYRDGANAQYVTGT 346
LLSE + AL + K+ S S++ S H T G ++ G N V T
Sbjct: 402 LLSER--PGKNPALVQSIKDSLLSTADSIVRTSQNHGYGRTLGTTYYW--GCNGTVVRQT 457
Query: 347 ALLFSIYADVLAKHNQKITCGDQQFGSSQLMAFAKKQMDYLLGANPRGRSYMVGFGKDPP 406
+L A+ ++ +N + A + ++ G N RSY+ G G +PP
Sbjct: 458 MIL--QVANKISPNNDYVNA-------------ALDAISHVFGRNYYNRSYVTGLGINPP 502
Query: 407 TRAHHR 412
H R
Sbjct: 503 MNPHDR 508
>pdb|1RQ5|A Chain A, Structural Basis For The Exocellulase Activity Of The
Cellobiohydrolase Cbha From C. Thermocellum
Length = 610
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 89/410 (21%), Positives = 141/410 (34%), Gaps = 86/410 (20%)
Query: 62 PAWRGDSGLEDGKQANV--DLVGGYYDAGDNVKYGLPMAFTISTL-------SLSALYYH 112
P W D Q N D+ GG+YDAGD+ KY + + TL + L
Sbjct: 150 PTWPQDDEYAGIPQKNYTKDVTGGWYDAGDHGKYVVNGGIAVWTLMNMYERAKIRGLDNW 209
Query: 113 QELKSAG----ELQN----VMDAIRWGTDYFLK---TSSRKNKLYVQVGDPVQDHQCWA- 160
+ G E N ++D RW ++F K T + V + D + A
Sbjct: 210 GPYRDGGMNIPEQNNGYPDILDEARWEIEFFKKMQVTEKEDPSIAGMVHHKIHDFRWTAL 269
Query: 161 --RPEEMKTPRTVLMIDSKTPGXXXXXXXXXXXXXXXXVFRGVDRPYSRRLLNKAKLLFH 218
P E PR + + + +++ D ++ L KA++ +
Sbjct: 270 GMLPHEDPQPRYLRPVSTAA-----TLNFAATLAQSARLWKDYDPTFAADCLEKAEIAWQ 324
Query: 219 FANSHKGTY---------DGECPFYCSYSGYNDELLWAATWLYMATRNPTYLEYIKED-- 267
A H Y G P+ Y G DE WAA LY+ T Y Y+
Sbjct: 325 AALKHPDIYAEYTPGSGGPGGGPYNDDYVG--DEFYWAACELYVTTGKDEYKNYLMNSPH 382
Query: 268 --SISAIVAE--------------FSWDLKYAGAQILLSEMFFESG------DQALANFK 305
+ A + E F+W I L+ E+G +A N
Sbjct: 383 YLEMPAKMGENGGANGEDNGLWGCFTWGTTQGLGTITLA--LVENGLPATDIQKARNNIA 440
Query: 306 NQADSYVCSVLPES---PYHQVYMTPGGLIHYRDGANAQYVTGTALLFSIYADVLAKHNQ 362
AD ++ ++ + P Q GG Y G+N+ ++ ++ D
Sbjct: 441 KAADRWLENIEEQGYRLPIKQAEDERGG---YPWGSNS-FILNQMIVMGYAYDFT----- 491
Query: 363 KITCGDQQFGSSQLMAFAKKQMDYLLGANPRGRSYMVGFGKDPPTRAHHR 412
G S+ + + YLLG N +SY+ G+G+ P H R
Sbjct: 492 ---------GDSKYLDGMFDGISYLLGRNAMDQSYVTGYGERPLQNPHDR 532
>pdb|1UT9|A Chain A, Structural Basis For The Exocellulase Activity Of The
Cellobiohydrolase Cbha From C. Thermocellum
Length = 609
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 89/410 (21%), Positives = 141/410 (34%), Gaps = 86/410 (20%)
Query: 62 PAWRGDSGLEDGKQANV--DLVGGYYDAGDNVKYGLPMAFTISTL-------SLSALYYH 112
P W D Q N D+ GG+YDAGD+ KY + + TL + L
Sbjct: 150 PTWPQDDEYAGIPQKNYTKDVTGGWYDAGDHGKYVVNGGIAVWTLMNMYERAKIRGLDNW 209
Query: 113 QELKSAG----ELQN----VMDAIRWGTDYFLK---TSSRKNKLYVQVGDPVQDHQCWA- 160
+ G E N ++D RW ++F K T + V + D + A
Sbjct: 210 GPYRDGGMNIPEQNNGYPDILDEARWEIEFFKKMQVTEKEDPSIAGMVHHKIHDFRWTAL 269
Query: 161 --RPEEMKTPRTVLMIDSKTPGXXXXXXXXXXXXXXXXVFRGVDRPYSRRLLNKAKLLFH 218
P E PR + + + +++ D ++ L KA++ +
Sbjct: 270 GMLPHEDPQPRYLRPVSTAA-----TLNFAATLAQSARLWKDYDPTFAADCLEKAEIAWQ 324
Query: 219 FANSHKGTY---------DGECPFYCSYSGYNDELLWAATWLYMATRNPTYLEYIKED-- 267
A H Y G P+ Y G DE WAA LY+ T Y Y+
Sbjct: 325 AALKHPDIYAEYTPGSGGPGGGPYNDDYVG--DEFYWAACELYVTTGKDEYKNYLMNSPH 382
Query: 268 --SISAIVAE--------------FSWDLKYAGAQILLSEMFFESG------DQALANFK 305
+ A + E F+W I L+ E+G +A N
Sbjct: 383 YLEMPAKMGENGGANGEDNGLWGCFTWGTTQGLGTITLA--LVENGLPATDIQKARNNIA 440
Query: 306 NQADSYVCSVLPES---PYHQVYMTPGGLIHYRDGANAQYVTGTALLFSIYADVLAKHNQ 362
AD ++ ++ + P Q GG Y G+N+ ++ ++ D
Sbjct: 441 KAADRWLENIEEQGYRLPIKQAEDERGG---YPWGSNS-FILNQMIVMGYAYDFT----- 491
Query: 363 KITCGDQQFGSSQLMAFAKKQMDYLLGANPRGRSYMVGFGKDPPTRAHHR 412
G S+ + + YLLG N +SY+ G+G+ P H R
Sbjct: 492 ---------GDSKYLDGMFDGISYLLGRNAMDQSYVTGYGERPLQNPHDR 532
>pdb|2O3A|A Chain A, Crystal Structure Of A Protein Af_0751 From Archaeoglobus
Fulgidus
pdb|2O3A|B Chain B, Crystal Structure Of A Protein Af_0751 From Archaeoglobus
Fulgidus
Length = 178
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 97 MAFTISTLSLSALYYHQELKSAGELQNVMDAI-RWGTDYFLKTSSRKNKL 145
+A T +Y+ E KS ++V D + RWG D+F+K S K L
Sbjct: 24 VALTARAFGAKGIYFDTEDKSV--FESVRDVVERWGGDFFIKAVSWKKLL 71
>pdb|1H0H|A Chain A, Tungsten Containing Formate Dehydrogenase From
Desulfovibrio Gigas
pdb|1H0H|K Chain K, Tungsten Containing Formate Dehydrogenase From
Desulfovibrio Gigas
Length = 977
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 201 VDRPYSRRLLNKAKLLFHFANSHKGTYDGECPFYCS 236
++ P+S+ L N L HFA K D PF CS
Sbjct: 820 IEHPFSKTLHNPTAL--HFATEEKAVCDPRYPFICS 853
>pdb|1UTJ|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTK|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTL|M Chain M, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTM|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
Length = 242
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 317 PESPYHQVYMTPGGLIHYRDGA--NAQYVTGTALLFSIYADV-LAKHNQKITCGDQQFGS 373
P S HQV + G H+ G+ N +V A + +V L +HN K+T G +QF S
Sbjct: 29 PYSQPHQVSLNSG--YHFCGGSLVNENWVVSAAHCYKSRVEVRLGEHNIKVTEGSEQFIS 86
Query: 374 SQ 375
S
Sbjct: 87 SS 88
>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
pdb|2ANL|B Chain B, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
Length = 327
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 13/93 (13%)
Query: 349 LFSIYADVLAKHNQKITCG--DQQFGSSQLMAFAKKQMDYLLGANPRGRSYMVGFGKDPP 406
LF+ Y V KH+ +T G +++F +L + K D + V FGK
Sbjct: 153 LFTFYLPVHDKHSGYLTIGGIEEKFYEGEL-TYEKLNHDLFWQVDLD-----VNFGK--- 203
Query: 407 TRAHHRGASVPLENVNSGVSCPMSFVNFFLKNM 439
A+V +++ S ++ P SF+N F K++
Sbjct: 204 --TSMEKANVIVDSGTSTITAPTSFINKFFKDL 234
>pdb|1BZX|E Chain E, The Crystal Structure Of Anionic Salmon Trypsin In Complex
With Bovine Pancreatic Trypsin Inhibitor
pdb|2STA|E Chain E, Anionic Salmon Trypsin In Complex With Squash Seed
Inhibitor (Cucurbita Maxima Trypsin Inhibitor I)
pdb|2STB|E Chain E, Anionic Salmon Trypsin In Complex With Squash Seed
Inhibitor (cucurbita Pepo Trypsin Inhibitor Ii)
Length = 222
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 317 PESPYHQVYMTPGGLIHYRDGA--NAQYVTGTALLFSIYADV-LAKHNQKITCGDQQFGS 373
P S HQV + G H+ G+ N +V A + +V L +HN K+T G +QF S
Sbjct: 9 PYSQPHQVSLNSG--YHFCGGSLVNENWVVSAAHCYKSRVEVRLGEHNIKVTEGSEQFIS 66
Query: 374 SQ 375
S
Sbjct: 67 SS 68
>pdb|2ZPS|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 3 From Chum
Salmon
Length = 222
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 322 HQVYMTPGGLIHYRDGA--NAQYVTGTALLFSIYADV-LAKHNQKITCGDQQFGSS 374
HQV + G H+ G+ N +V A + +V L +HN K+T G +QF SS
Sbjct: 14 HQVSLNSG--YHFCGGSLVNENWVVSAAHCYKTRVEVRLGEHNIKVTEGSEQFISS 67
>pdb|1BIT|A Chain A, The Crystal Structure Of Anionic Salmon Trypsin In A
Second Crystal Form
Length = 237
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 14/92 (15%)
Query: 287 ILLSEMFFESGDQALANFKNQADSYVCSVLPESPYHQVYMTPGGLIHYRDGA--NAQYVT 344
+L+ F D+ + ++ +A S HQV + G H+ G+ N +V
Sbjct: 3 LLIGAAFATEDDKIVGGYECKAYSQA---------HQVSLNSG--YHFCGGSLVNENWVV 51
Query: 345 GTALLFSIYADV-LAKHNQKITCGDQQFGSSQ 375
A + +V L +HN K+T G +QF SS
Sbjct: 52 SAAHCYKSRVEVRLGEHNIKVTEGSEQFISSS 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,529,393
Number of Sequences: 62578
Number of extensions: 664120
Number of successful extensions: 1204
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1146
Number of HSP's gapped (non-prelim): 28
length of query: 493
length of database: 14,973,337
effective HSP length: 103
effective length of query: 390
effective length of database: 8,527,803
effective search space: 3325843170
effective search space used: 3325843170
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)