BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037591
(331 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 184 bits (466), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 87/158 (55%), Positives = 112/158 (70%), Gaps = 4/158 (2%)
Query: 9 TLPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMGEKEWYF 68
+LPPGFRF+P+DEEL+ YL K + F+ + IA++DL K +PW LP KA GEKEWYF
Sbjct: 19 SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYF 78
Query: 69 FSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRAPRGEKT 128
FS RDRKYP G R NR +GYWK TG DK I S + VG+KK LVFY G+AP+G KT
Sbjct: 79 FSPRDRKYPNGSRPNRVAGSGYWKATGTDKII--STEGQRVGIKKALVFYIGKAPKGTKT 136
Query: 129 NWVMHEYRI--HSKSAFRTSKDEWVVCRVFQKSAGAKK 164
NW+MHEYR+ S+ T D+WV+CR+++K + A+K
Sbjct: 137 NWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQK 174
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 183 bits (465), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 87/158 (55%), Positives = 112/158 (70%), Gaps = 4/158 (2%)
Query: 9 TLPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMGEKEWYF 68
+LPPGFRF+P+DEEL+ YL K + F+ + IA++DL K +PW LP KA GEKEWYF
Sbjct: 16 SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYF 75
Query: 69 FSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRAPRGEKT 128
FS RDRKYP G R NR +GYWK TG DK I S + VG+KK LVFY G+AP+G KT
Sbjct: 76 FSPRDRKYPNGSRPNRVAGSGYWKATGTDKII--STEGQRVGIKKALVFYIGKAPKGTKT 133
Query: 129 NWVMHEYRI--HSKSAFRTSKDEWVVCRVFQKSAGAKK 164
NW+MHEYR+ S+ T D+WV+CR+++K + A+K
Sbjct: 134 NWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQK 171
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 167 bits (423), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 79/160 (49%), Positives = 101/160 (63%), Gaps = 9/160 (5%)
Query: 7 EETLPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMGEKEW 66
E LPPGFRFHP+D+EL+ +YL K + IA+VDL K +PWDLP +A G +EW
Sbjct: 12 ELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREW 71
Query: 67 YFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRAPRGE 126
YFF+ RDRKYP G R NRA GYWK TG DK + + +G+KK LVFY G+APRG
Sbjct: 72 YFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPV--APRGRTLGIKKALVFYAGKAPRGV 129
Query: 127 KTNWVMHEYRIHSKSAFRTSK-------DEWVVCRVFQKS 159
KT+W+MHEYR+ D+WV+CR++ K
Sbjct: 130 KTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKK 169
>pdb|2Y9W|C Chain C, Crystal Structure Of Ppo3, A Tyrosinase From Agaricus
Bisporus, In Deoxy-Form That Contains Additional Unknown
Lectin-Like Subunit
pdb|2Y9W|D Chain D, Crystal Structure Of Ppo3, A Tyrosinase From Agaricus
Bisporus, In Deoxy-Form That Contains Additional Unknown
Lectin-Like Subunit
pdb|2Y9X|E Chain E, Crystal Structure Of Ppo3, A Tyrosinase From Agaricus
Bisporus, In Deoxy-Form That Contains Additional Unknown
Lectin-Like Subunit, With Inhibitor Tropolone
pdb|2Y9X|F Chain F, Crystal Structure Of Ppo3, A Tyrosinase From Agaricus
Bisporus, In Deoxy-Form That Contains Additional Unknown
Lectin-Like Subunit, With Inhibitor Tropolone
pdb|2Y9X|G Chain G, Crystal Structure Of Ppo3, A Tyrosinase From Agaricus
Bisporus, In Deoxy-Form That Contains Additional Unknown
Lectin-Like Subunit, With Inhibitor Tropolone
pdb|2Y9X|H Chain H, Crystal Structure Of Ppo3, A Tyrosinase From Agaricus
Bisporus, In Deoxy-Form That Contains Additional Unknown
Lectin-Like Subunit, With Inhibitor Tropolone
Length = 150
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 29/92 (31%), Gaps = 9/92 (9%)
Query: 74 RKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRAPRGEKTNWVMH 133
RK P + R N W NS T L TL+ + P + W++H
Sbjct: 5 RKIPLDLPGTRILNGANWAN--------NSATENLATNSGTLIIFDQSTPGQDADRWLIH 56
Query: 134 EYRIHSKSAFRTSKDEWVVCRVFQKSAGAKKF 165
Y + F + W G +F
Sbjct: 57 NY-LDGYKIFNMGSNNWASVSRGNTVLGVSEF 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,792,754
Number of Sequences: 62578
Number of extensions: 382897
Number of successful extensions: 858
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 848
Number of HSP's gapped (non-prelim): 8
length of query: 331
length of database: 14,973,337
effective HSP length: 99
effective length of query: 232
effective length of database: 8,778,115
effective search space: 2036522680
effective search space used: 2036522680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)