Query 037591
Match_columns 331
No_of_seqs 184 out of 977
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 03:24:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037591.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037591hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 1.1E-57 3.9E-62 406.6 14.4 156 4-161 9-171 (174)
2 1ut7_A No apical meristem prot 100.0 9.3E-57 3.2E-61 399.6 13.0 157 5-163 12-170 (171)
3 1cmb_A Met APO-repressor; DNA- 25.0 46 0.0016 26.5 2.8 40 17-60 50-89 (104)
4 1ldd_A APC2WHB, anaphase promo 18.6 63 0.0021 24.5 2.3 25 11-36 37-62 (74)
5 2c4b_A Barnase mcoeeti fusion; 12.0 1.7E+02 0.0057 24.9 3.4 61 19-93 4-72 (143)
6 3uif_A Sulfonate ABC transport 9.8 88 0.003 28.3 1.0 10 322-331 317-326 (348)
7 3nr5_A MAF1, repressor of RNA 9.7 73 0.0025 27.7 0.4 13 41-53 118-130 (164)
8 3cpr_A Dihydrodipicolinate syn 9.1 1.1E+02 0.0037 28.3 1.3 18 10-28 118-135 (304)
9 3fkr_A L-2-keto-3-deoxyarabona 8.7 1.5E+02 0.0053 27.3 2.2 19 9-28 109-130 (309)
10 4dox_A Coat protein; all helix 8.3 1.6E+02 0.0055 26.8 2.1 24 8-31 153-176 (226)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=1.1e-57 Score=406.55 Aligned_cols=156 Identities=51% Similarity=1.017 Sum_probs=137.1
Q ss_pred CCCCCCCCCcceECCCHHHHHHHHHHHhhcCCCCCccceeccCCCCCCCCCCCCcccCCCeeEEEEeecCCcCCCCCccc
Q 037591 4 DKKEETLPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTN 83 (331)
Q Consensus 4 ~~~~~~LPpGfRF~PTDEELI~~YL~~Ki~g~p~~~~~I~dvDly~~ePWdLP~~~~~ge~eWYFFs~r~rk~~~G~R~n 83 (331)
.+.+..|||||||||||||||.|||++|+.|.+++..+|.++|||++|||+||+.+..++++||||+++++||++|.|++
T Consensus 9 ~~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~n 88 (174)
T 3ulx_A 9 AEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPN 88 (174)
T ss_dssp CCSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSC
T ss_pred cccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCce
Confidence 45678999999999999999999999999999999999999999999999999998888999999999999999999999
Q ss_pred cccCCCceeecCCCeeEEeCCCCeEEeEEEEEEEeecCCCCCCccCeEEEEEEeCCCCCcC-------CCCCcEEEEEEE
Q 037591 84 RATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRAPRGEKTNWVMHEYRIHSKSAFR-------TSKDEWVVCRVF 156 (331)
Q Consensus 84 Rat~~GyWKatGk~k~I~~~~~g~vIG~KKtLvFY~gr~pkg~KT~WvMhEY~L~~~~~~~-------~~~~e~VLCRVf 156 (331)
|+|++||||+||+++.|.. .|.+||+||+|+||.|++|++.||+|+||||+|....... ...++|||||||
T Consensus 89 R~t~~G~WkatG~dk~I~~--~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf 166 (174)
T 3ulx_A 89 RAAGNGYWKATGADKPVAP--RGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLY 166 (174)
T ss_dssp EEETTEEEEECSCCEEECC--SSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEE
T ss_pred eecCCceEccCCCCcEEee--CCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEE
Confidence 9999999999999999976 4799999999999999999999999999999998753211 124899999999
Q ss_pred EcCCC
Q 037591 157 QKSAG 161 (331)
Q Consensus 157 ~K~~~ 161 (331)
+|++.
T Consensus 167 ~K~~~ 171 (174)
T 3ulx_A 167 NKKNE 171 (174)
T ss_dssp ESCC-
T ss_pred EcCCC
Confidence 99864
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=9.3e-57 Score=399.63 Aligned_cols=157 Identities=54% Similarity=1.025 Sum_probs=133.3
Q ss_pred CCCCCCCCcceECCCHHHHHHHHHHHhhcCCCCCccceeccCCCCCCCCCCCCcccCCCeeEEEEeecCCcCCCCCcccc
Q 037591 5 KKEETLPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNR 84 (331)
Q Consensus 5 ~~~~~LPpGfRF~PTDEELI~~YL~~Ki~g~p~~~~~I~dvDly~~ePWdLP~~~~~ge~eWYFFs~r~rk~~~G~R~nR 84 (331)
..+..|||||||||||||||.|||++|+.|.+++..+|+++|||++|||+||+.+..++++||||+++++||++|.|++|
T Consensus 12 ~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~R 91 (171)
T 1ut7_A 12 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNR 91 (171)
T ss_dssp CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCE
T ss_pred ccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCcccc
Confidence 34578999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred ccCCCceeecCCCeeEEeCCCCeEEeEEEEEEEeecCCCCCCccCeEEEEEEeCCCCCcC--CCCCcEEEEEEEEcCCCC
Q 037591 85 ATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRAPRGEKTNWVMHEYRIHSKSAFR--TSKDEWVVCRVFQKSAGA 162 (331)
Q Consensus 85 at~~GyWKatGk~k~I~~~~~g~vIG~KKtLvFY~gr~pkg~KT~WvMhEY~L~~~~~~~--~~~~e~VLCRVf~K~~~~ 162 (331)
+|++||||+||+++.|.. .+.+||+||+|+||+|++|++.||+|+||||+|...+... ...++|||||||+|+...
T Consensus 92 ~t~~G~Wk~tG~~k~I~~--~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~~ 169 (171)
T 1ut7_A 92 VAGSGYWKATGTDKIIST--EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSA 169 (171)
T ss_dssp EETTEEEEEEEEEEEEEE--TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC---
T ss_pred cCCCCEEeccCCCceEEe--cCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCCC
Confidence 999999999999999986 4699999999999999999999999999999998764211 234899999999998754
Q ss_pred C
Q 037591 163 K 163 (331)
Q Consensus 163 k 163 (331)
+
T Consensus 170 ~ 170 (171)
T 1ut7_A 170 Q 170 (171)
T ss_dssp -
T ss_pred C
Confidence 3
No 3
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=24.96 E-value=46 Score=26.45 Aligned_cols=40 Identities=25% Similarity=0.434 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCccceeccCCCCCCCCCCCCccc
Q 037591 17 HPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAK 60 (331)
Q Consensus 17 ~PTDEELI~~YL~~Ki~g~p~~~~~I~dvDly~~ePWdLP~~~~ 60 (331)
|-|.-||+|.-...-..|+|+|. |-||-+..|.++|..++
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~----D~Dl~Kd~~d~iP~~ak 89 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPEAAK 89 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCHHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCCccchHHHH
Confidence 67888999986667889999886 77899999999998643
No 4
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=18.64 E-value=63 Score=24.48 Aligned_cols=25 Identities=16% Similarity=0.360 Sum_probs=21.3
Q ss_pred CCcceECC-CHHHHHHHHHHHhhcCCC
Q 037591 11 PPGFRFHP-SDEELITYYLVNKISDAS 36 (331)
Q Consensus 11 PpGfRF~P-TDEELI~~YL~~Ki~g~p 36 (331)
|.|+.|.. |++||-. ||..|+...-
T Consensus 37 ~~~~~~~~it~~eL~~-fL~~~v~e~k 62 (74)
T 1ldd_A 37 PKDWGYNRITLQQLEG-YLNTLADEGR 62 (74)
T ss_dssp CGGGCCTTCCHHHHHH-HHHHHHHTTS
T ss_pred CCCCCCCcCCHHHHHH-HHHHHHhCCe
Confidence 67899998 9999987 7999998764
No 5
>2c4b_A Barnase mcoeeti fusion; squash inhibitor, hybrid microprotein, fusion protein, ribonuclease, endonuclease, hydrolase, nuclease; HET: 2PE MES; 1.3A {Bacillus amyloliquefaciens} SCOP: d.1.1.2 g.3.2.1 PDB: 1b3s_A 2kf3_A 2kf4_A 2kf5_A 2kf6_A 1a2p_A 1b27_A 1b2x_A 1bgs_A 1bni_A 1bnj_A 1bnr_A 1brn_L* 1brs_A 1fw7_A 1x1u_A 1x1w_A 1x1x_A 1yvs_A 3kch_A ...
Probab=11.98 E-value=1.7e+02 Score=24.92 Aligned_cols=61 Identities=21% Similarity=0.310 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHhhcCCCCCcccee--ccCCCCCCCCC------CCCcccCCCeeEEEEeecCCcCCCCCccccccCCCc
Q 037591 19 SDEELITYYLVNKISDASFTGRAIA--DVDLNKCEPWD------LPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGY 90 (331)
Q Consensus 19 TDEELI~~YL~~Ki~g~p~~~~~I~--dvDly~~ePWd------LP~~~~~ge~eWYFFs~r~rk~~~G~R~nRat~~Gy 90 (331)
|+.+-|..||.. ...+|...|. +++--..+|-+ +|++...|+. |..+.+.-|. ..+|+
T Consensus 4 t~~~~V~~yl~~---~~~LP~~yiTK~eA~~~GW~p~kgnL~~v~pgk~igG~v----F~NrE~~LP~-------~~~~~ 69 (143)
T 2c4b_A 4 NTFDGVADYLQT---YHKLPDNYITKSEAQALGWVASKGNLADVAPGKSIGGDI----FSNREGKLPG-------KSGRT 69 (143)
T ss_dssp CSHHHHHHHHHH---HSSCCTTEECHHHHHHTTCCGGGTCHHHHSTTCEEEEEE----ECCTTCCSCC-------CTTCC
T ss_pred cchhHHHHHHHH---hCcCCcccccHHHHHHcCCCCCcCcHhhcCCCcccCCce----EecCCCcCCC-------CCCCE
Confidence 455566678875 2356766665 34445667754 5665443322 4444333332 23678
Q ss_pred eee
Q 037591 91 WKT 93 (331)
Q Consensus 91 WKa 93 (331)
|+.
T Consensus 70 y~E 72 (143)
T 2c4b_A 70 WRE 72 (143)
T ss_dssp EEE
T ss_pred EEE
Confidence 965
No 6
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=9.81 E-value=88 Score=28.28 Aligned_cols=10 Identities=30% Similarity=1.198 Sum_probs=8.3
Q ss_pred cccCCCCCCC
Q 037591 322 MDLDSYWPPY 331 (331)
Q Consensus 322 ~~~~~~~~~~ 331 (331)
.-|++|||||
T Consensus 317 l~~~~~w~~~ 326 (348)
T 3uif_A 317 LKLEGFWTPN 326 (348)
T ss_dssp TTCTTTSCCC
T ss_pred cCCcccCccc
Confidence 3589999997
No 7
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=9.67 E-value=73 Score=27.67 Aligned_cols=13 Identities=23% Similarity=0.447 Sum_probs=11.0
Q ss_pred ceeccCCCCCCCC
Q 037591 41 AIADVDLNKCEPW 53 (331)
Q Consensus 41 ~I~dvDly~~ePW 53 (331)
-+.++|||++.|.
T Consensus 118 ~l~dC~IYsY~Pd 130 (164)
T 3nr5_A 118 CLAECDIYSYNPD 130 (164)
T ss_dssp CGGGCEEEEECCC
T ss_pred CccCCeEEEEcCC
Confidence 3678999999998
No 8
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=9.12 E-value=1.1e+02 Score=28.29 Aligned_cols=18 Identities=28% Similarity=0.556 Sum_probs=14.5
Q ss_pred CCCcceECCCHHHHHHHHH
Q 037591 10 LPPGFRFHPSDEELITYYL 28 (331)
Q Consensus 10 LPpGfRF~PTDEELI~~YL 28 (331)
+|| |.|.|++++|+.||-
T Consensus 118 ~~P-~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 118 VTP-YYSKPSQEGLLAHFG 135 (304)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 466 568899999999874
No 9
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=8.68 E-value=1.5e+02 Score=27.33 Aligned_cols=19 Identities=21% Similarity=0.882 Sum_probs=14.8
Q ss_pred CCCCcce---ECCCHHHHHHHHH
Q 037591 9 TLPPGFR---FHPSDEELITYYL 28 (331)
Q Consensus 9 ~LPpGfR---F~PTDEELI~~YL 28 (331)
-+|| |. |.|++++|+.||-
T Consensus 109 v~~P-yy~~~~~~s~~~l~~~f~ 130 (309)
T 3fkr_A 109 AMPP-YHGATFRVPEAQIFEFYA 130 (309)
T ss_dssp ECCS-CBTTTBCCCHHHHHHHHH
T ss_pred EcCC-CCccCCCCCHHHHHHHHH
Confidence 3466 54 7999999999874
No 10
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=8.31 E-value=1.6e+02 Score=26.77 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=17.1
Q ss_pred CCCCCcceECCCHHHHHHHHHHHh
Q 037591 8 ETLPPGFRFHPSDEELITYYLVNK 31 (331)
Q Consensus 8 ~~LPpGfRF~PTDEELI~~YL~~K 31 (331)
...+-|..+.||++|+|.|=..++
T Consensus 153 l~P~~GLiR~PT~~E~iA~~t~K~ 176 (226)
T 4dox_A 153 MQPPSGLTRSPTQEERIANATNKQ 176 (226)
T ss_dssp CCCTTCCSSCCCHHHHHHHHTC--
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHH
Confidence 333458999999999999844443
Done!