Query 037591
Match_columns 331
No_of_seqs 184 out of 977
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 03:24:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037591.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037591hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ut7a_ b.143.1.1 (A:) No apic 100.0 2E-53 1.5E-57 373.0 13.0 153 5-159 12-166 (166)
2 d1cmca_ a.43.1.5 (A:) Met repr 27.1 19 0.0014 26.7 2.8 39 17-59 50-88 (104)
3 d1o5ka_ c.1.10.1 (A:) Dihydrod 12.9 32 0.0023 28.8 1.3 18 10-28 103-120 (295)
4 d1ldda_ a.4.5.34 (A:) Anaphase 10.4 73 0.0053 22.4 2.4 27 10-37 36-63 (74)
5 d1lcsa_ b.20.1.1 (A:) FLV rece 9.5 1.1E+02 0.0082 25.2 3.7 16 86-101 103-118 (205)
6 d1f74a_ c.1.10.1 (A:) N-acetyl 9.0 73 0.0053 26.4 2.4 19 10-29 106-124 (293)
7 d1xkya1 c.1.10.1 (A:1-292) Dih 8.0 61 0.0044 26.9 1.3 18 10-28 105-122 (292)
8 d2a6na1 c.1.10.1 (A:1-292) Dih 7.6 70 0.0051 26.6 1.5 18 10-28 103-120 (292)
9 d2co8a1 g.39.1.3 (A:44-76) Ned 7.0 65 0.0047 19.3 0.7 11 11-21 11-21 (33)
10 d1hl2a_ c.1.10.1 (A:) N-acetyl 6.5 88 0.0064 25.8 1.7 19 10-29 104-122 (295)
No 1
>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=100.00 E-value=2e-53 Score=372.99 Aligned_cols=153 Identities=55% Similarity=1.040 Sum_probs=132.1
Q ss_pred CCCCCCCCcceECCCHHHHHHHHHHHhhcCCCCCccceeccCCCCCCCCCCCCcccCCCeeEEEEeecCCcCCCCCcccc
Q 037591 5 KKEETLPPGFRFHPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNR 84 (331)
Q Consensus 5 ~~~~~LPpGfRF~PTDEELI~~YL~~Ki~g~p~~~~~I~dvDly~~ePWdLP~~~~~ge~eWYFFs~r~rk~~~G~R~nR 84 (331)
..+..|||||||+|||||||.|||++||.|.+++..+|+++|||++|||+||+....++++||||+++.+++++|.|.+|
T Consensus 12 ~~~l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~~~Dvy~~~Pw~Lp~~~~~~~~~wyFft~~~~k~~~g~r~~R 91 (166)
T d1ut7a_ 12 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNR 91 (166)
T ss_dssp CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCE
T ss_pred cccccCCCccccCCCcHHHHHHHHHHHHcCCCCCcccceeccCCcCChhhccchhccCcceEEEEeeeccccCCCCcccc
Confidence 45689999999999999999999999999999999999999999999999999888889999999999999999999999
Q ss_pred ccCCCceeecCCCeeEEeCCCCeEEeEEEEEEEeecCCCCCCccCeEEEEEEeCCCCCcC--CCCCcEEEEEEEEcC
Q 037591 85 ATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYRGRAPRGEKTNWVMHEYRIHSKSAFR--TSKDEWVVCRVFQKS 159 (331)
Q Consensus 85 at~~GyWKatGk~k~I~~~~~g~vIG~KKtLvFY~gr~pkg~KT~WvMhEY~L~~~~~~~--~~~~e~VLCRVf~K~ 159 (331)
++++|+||++|+++.|.+ +|.+||+||+|+||+++++++.||+|+||||+|.+..... ...++|||||||+|+
T Consensus 92 ~~g~G~Wk~~g~~~~i~~--~g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~~~~~~~~~~~VLCrI~~Kk 166 (166)
T d1ut7a_ 92 VAGSGYWKATGTDKIIST--EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ 166 (166)
T ss_dssp EETTEEEEEEEEEEEEEE--TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC
T ss_pred ccCCCEecccCCCceEec--CCcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCcccccCccccCCEEEEEEEecC
Confidence 999999999999998875 6899999999999999999999999999999998764322 234789999999985
No 2
>d1cmca_ a.43.1.5 (A:) Met repressor, MetJ (MetR) {Escherichia coli [TaxId: 562]}
Probab=27.13 E-value=19 Score=26.74 Aligned_cols=39 Identities=23% Similarity=0.417 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCccceeccCCCCCCCCCCCCcc
Q 037591 17 HPSDEELITYYLVNKISDASFTGRAIADVDLNKCEPWDLPGKA 59 (331)
Q Consensus 17 ~PTDEELI~~YL~~Ki~g~p~~~~~I~dvDly~~ePWdLP~~~ 59 (331)
|-|.-||+|.-...-..|+|+|. |-||-+..|.+||..+
T Consensus 50 HATNSELLCEAFLHAfTGQPLP~----D~Dl~Kd~~~~iP~~~ 88 (104)
T d1cmca_ 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCcccccHHH
Confidence 67888999986677889999886 7799999999999864
No 3
>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=12.85 E-value=32 Score=28.75 Aligned_cols=18 Identities=28% Similarity=0.554 Sum_probs=14.2
Q ss_pred CCCcceECCCHHHHHHHHH
Q 037591 10 LPPGFRFHPSDEELITYYL 28 (331)
Q Consensus 10 LPpGfRF~PTDEELI~~YL 28 (331)
+|| |.|.||++||+.||-
T Consensus 103 ~pP-~y~~~s~~~i~~~~~ 120 (295)
T d1o5ka_ 103 VTP-YYNKPTQEGLYQHYK 120 (295)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred eCC-CCCCCCHHHHHHHHH
Confidence 455 668899999999764
No 4
>d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.39 E-value=73 Score=22.40 Aligned_cols=27 Identities=15% Similarity=0.352 Sum_probs=21.3
Q ss_pred CCCcceE-CCCHHHHHHHHHHHhhcCCCC
Q 037591 10 LPPGFRF-HPSDEELITYYLVNKISDASF 37 (331)
Q Consensus 10 LPpGfRF-~PTDEELI~~YL~~Ki~g~p~ 37 (331)
.|.|+.| .+|.+||-. ||..|+...-+
T Consensus 36 v~~~~~~~~~t~~eL~~-FL~~~V~e~kL 63 (74)
T d1ldda_ 36 VPKDWGYNRITLQQLEG-YLNTLADEGRL 63 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSE
T ss_pred cCCCCCCCCcCHHHHHH-HHHHHHhcCce
Confidence 3678888 578899886 79999988743
No 5
>d1lcsa_ b.20.1.1 (A:) FLV receptor-binding domain {Feline leukemia virus, strain b/lambda-b1 [TaxId: 11768]}
Probab=9.46 E-value=1.1e+02 Score=25.19 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=11.7
Q ss_pred cCCCceeecCCCeeEE
Q 037591 86 TNTGYWKTTGKDKEIF 101 (331)
Q Consensus 86 t~~GyWKatGk~k~I~ 101 (331)
++.||||.+.+.--|.
T Consensus 103 tg~~yWkP~s~wD~It 118 (205)
T d1lcsa_ 103 TGETYWRPTSSWDYIT 118 (205)
T ss_dssp EEESTTCCCCSSSSEE
T ss_pred cCCcccccCCCCceEE
Confidence 4678999888765554
No 6
>d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]}
Probab=9.05 E-value=73 Score=26.42 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=14.7
Q ss_pred CCCcceECCCHHHHHHHHHH
Q 037591 10 LPPGFRFHPSDEELITYYLV 29 (331)
Q Consensus 10 LPpGfRF~PTDEELI~~YL~ 29 (331)
+||-| |.||++|++.||..
T Consensus 106 ~pP~~-~~~s~~~~~~~~~~ 124 (293)
T d1f74a_ 106 VTPFY-YKFSFPEIKHYYDT 124 (293)
T ss_dssp CCCCS-SCCCHHHHHHHHHH
T ss_pred cCccc-cccchHHHHHHHhc
Confidence 45544 88999999998853
No 7
>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]}
Probab=8.00 E-value=61 Score=26.86 Aligned_cols=18 Identities=22% Similarity=0.499 Sum_probs=14.3
Q ss_pred CCCcceECCCHHHHHHHHH
Q 037591 10 LPPGFRFHPSDEELITYYL 28 (331)
Q Consensus 10 LPpGfRF~PTDEELI~~YL 28 (331)
+|| +.|.|++++|+.||-
T Consensus 105 ~pP-~~~~~s~~~i~~~~~ 122 (292)
T d1xkya1 105 VAP-YYNKPSQEGMYQHFK 122 (292)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 355 678899999999765
No 8
>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]}
Probab=7.57 E-value=70 Score=26.55 Aligned_cols=18 Identities=28% Similarity=0.517 Sum_probs=13.5
Q ss_pred CCCcceECCCHHHHHHHHH
Q 037591 10 LPPGFRFHPSDEELITYYL 28 (331)
Q Consensus 10 LPpGfRF~PTDEELI~~YL 28 (331)
+|| |.|.|+|+||+.||-
T Consensus 103 ~pP-~~~~~~~~~i~~~f~ 120 (292)
T d2a6na1 103 VTP-YYNRPSQEGLYQHFK 120 (292)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred cCC-CCCCCCHHHHHHHHH
Confidence 355 447899999998754
No 9
>d2co8a1 g.39.1.3 (A:44-76) Nedd9 interacting protein with calponin homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.03 E-value=65 Score=19.31 Aligned_cols=11 Identities=45% Similarity=1.011 Sum_probs=8.8
Q ss_pred CCcceECCCHH
Q 037591 11 PPGFRFHPSDE 21 (331)
Q Consensus 11 PpGfRF~PTDE 21 (331)
|-||++||-|-
T Consensus 11 pG~Y~qhp~dg 21 (33)
T d2co8a1 11 PGGYEQHPGDG 21 (33)
T ss_dssp TTSEECCTTTC
T ss_pred cCcccCCCCCc
Confidence 77899999773
No 10
>d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]}
Probab=6.52 E-value=88 Score=25.85 Aligned_cols=19 Identities=32% Similarity=0.357 Sum_probs=0.0
Q ss_pred CCCcceECCCHHHHHHHHHH
Q 037591 10 LPPGFRFHPSDEELITYYLV 29 (331)
Q Consensus 10 LPpGfRF~PTDEELI~~YL~ 29 (331)
+|| +.|.++++|++.||..
T Consensus 104 ~~p-~~~~~~~~~~~~~~~~ 122 (295)
T d1hl2a_ 104 VTP-FYYPFSFEEHCDHYRA 122 (295)
T ss_dssp ECC-CSSCCCHHHHHHHHHH
T ss_pred eec-cccCCChHHHHHHHHH
Done!